pharo: Compile with -DPharoVM
This is important. The VM was not compiled in "Pharo mode" and this made certain primitives return different values to the Smalltalk side. (Practically speaking I am surprised that the VM has been working basically fine for me for weeks, but this resolves a problem with adding filetree:// repositories with Monticello that failed in an obscure way when the file permissions lookup primitive did not behave as expected.) See also: https://pharo.fogbugz.com/f/cases/20217/Image-does-not-detect-incompatible-opensmalltalk-vm
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