dockerTools.buildLayeredImage: store all paths passed in final layer

Fixes #78744

My previous change broke when there are more packages than the maximum
number of layers. I had assumed that the `store-path-to-layer.sh` was
only ever passed a single store path, but that is not the case if
there are multiple packages going into the final layer. To fix this, we
loop through the paths going into the final layer, appending them to the
tar file and making sure they end up at the right path.