diff --git a/.github/CODEOWNERS b/.github/CODEOWNERS index 76fb19529b031166e9e60753388f89a5f4bf334a..5c2b495fa8e18ce42f59fca39283f52bccb342f9 100644 --- a/.github/CODEOWNERS +++ b/.github/CODEOWNERS @@ -12,7 +12,7 @@ # Libraries /lib @edolstra @nbp -/lib/systems @nbp @ericson2314 +/lib/systems @nbp @ericson2314 @matthewbauer /lib/generators.nix @edolstra @nbp @Profpatsch /lib/debug.nix @edolstra @nbp @Profpatsch @@ -20,9 +20,11 @@ /default.nix @nbp /pkgs/top-level/default.nix @nbp @Ericson2314 /pkgs/top-level/impure.nix @nbp @Ericson2314 -/pkgs/top-level/stage.nix @nbp @Ericson2314 -/pkgs/stdenv/generic @Ericson2314 -/pkgs/stdenv/cross @Ericson2314 +/pkgs/top-level/stage.nix @nbp @Ericson2314 @matthewbauer +/pkgs/top-level/splice.nix @Ericson2314 @matthewbauer +/pkgs/top-level/release-cross.nix @Ericson2314 @matthewbauer +/pkgs/stdenv/generic @Ericson2314 @matthewbauer +/pkgs/stdenv/cross @Ericson2314 @matthewbauer /pkgs/build-support/cc-wrapper @Ericson2314 @orivej /pkgs/build-support/bintools-wrapper @Ericson2314 @orivej /pkgs/build-support/setup-hooks @Ericson2314 @@ -45,6 +47,9 @@ /nixos/doc/manual/man-nixos-option.xml @nbp /nixos/modules/installer/tools/nixos-option.sh @nbp +# NixOS modules +/nixos/modules @Infinisil + # Python-related code and docs /maintainers/scripts/update-python-libraries @FRidh /pkgs/top-level/python-packages.nix @FRidh @@ -74,6 +79,14 @@ /pkgs/stdenv/darwin @NixOS/darwin-maintainers /pkgs/os-specific/darwin @NixOS/darwin-maintainers +# C compilers +/pkgs/development/compilers/gcc @matthewbauer +/pkgs/development/compilers/llvm @matthewbauer + +# Compatibility stuff +/pkgs/top-level/unix-tools.nix @matthewbauer +/pkgs/development/tools/xcbuild @matthewbauer + # Beam-related (Erlang, Elixir, LFE, etc) /pkgs/development/beam-modules @gleber /pkgs/development/interpreters/erlang @gleber @@ -97,3 +110,13 @@ /pkgs/desktops/plasma-5 @ttuegel /pkgs/development/libraries/kde-frameworks @ttuegel /pkgs/development/libraries/qt-5 @ttuegel + +# PostgreSQL and related stuff +/pkgs/servers/sql/postgresql @thoughtpolice +/nixos/modules/services/databases/postgresql.xml @thoughtpolice +/nixos/modules/services/databases/postgresql.nix @thoughtpolice +/nixos/tests/postgresql.nix @thoughtpolice + +# Dhall +/pkgs/development/dhall-modules @Gabriel439 @Profpatsch +/pkgs/development/interpreters/dhall @Gabriel439 @Profpatsch diff --git a/doc/coding-conventions.xml b/doc/coding-conventions.xml index b3f7f093835cd4e3fbe54565fe2854a763ac8cb7..3e8a0ea4a703d70ac3d1bd284a2385c94e1a2383 100644 --- a/doc/coding-conventions.xml +++ b/doc/coding-conventions.xml @@ -842,9 +842,12 @@ src = fetchFromGitHub { owner = "NixOS"; repo = "nix"; rev = "1f795f9f44607cc5bec70d1300150bfefcef2aae"; - sha256 = "04yri911rj9j19qqqn6m82266fl05pz98inasni0vxr1cf1gdgv9"; + sha256 = "1i2yxndxb6yc9l6c99pypbd92lfq5aac4klq7y2v93c9qvx2cgpc"; } + Find the value to put as sha256 by running + nix run -f '<nixpkgs>' nix-prefetch-github -c nix-prefetch-github --rev 1f795f9f44607cc5bec70d1300150bfefcef2aae NixOS nix + or nix-prefetch-url --unpack https://github.com/NixOS/nix/archive/1f795f9f44607cc5bec70d1300150bfefcef2aae.tar.gz. diff --git a/doc/languages-frameworks/index.xml b/doc/languages-frameworks/index.xml index f22984cb56b0aba028488f843539982ba6bb1d78..ac0ad7125324cc0e8dd70ace675aa46ed1b099a5 100644 --- a/doc/languages-frameworks/index.xml +++ b/doc/languages-frameworks/index.xml @@ -19,6 +19,7 @@ + diff --git a/doc/languages-frameworks/ocaml.xml b/doc/languages-frameworks/ocaml.xml new file mode 100644 index 0000000000000000000000000000000000000000..ea0770616802a0fa27da7daa8106bfb126ce6f7d --- /dev/null +++ b/doc/languages-frameworks/ocaml.xml @@ -0,0 +1,99 @@ +
+ OCaml + + + OCaml libraries should be installed in + $(out)/lib/ocaml/${ocaml.version}/site-lib/. Such + directories are automatically added to the $OCAMLPATH + environment variable when building another package that depends on them + or when opening a nix-shell. + + + + Given that most of the OCaml ecosystem is now built with dune, + nixpkgs includes a convenience build support function called + buildDunePackage that will build an OCaml package + using dune, OCaml and findlib and any additional dependencies provided + as buildInputs or propagatedBuildInputs. + + + + Here is a simple package example. It defines an (optional) attribute + minimumOCamlVersion that will be used to throw a + descriptive evaluation error if building with an older OCaml is attempted. + It uses the fetchFromGitHub fetcher to get its source. + It sets the doCheck (optional) attribute to + true which means that tests will be run with + dune runtest -p angstrom after the build + (dune build -p angstrom) is complete. + It uses alcotest as a build input (because it is needed + to run the tests) and bigstringaf and + result as propagated build inputs (thus they will also + be available to libraries depending on this library). + The library will be installed using the angstrom.install + file that dune generates. + + + +{ stdenv, fetchFromGitHub, buildDunePackage, alcotest, result, bigstringaf }: + +buildDunePackage rec { + pname = "angstrom"; + version = "0.10.0"; + + minimumOCamlVersion = "4.03"; + + src = fetchFromGitHub { + owner = "inhabitedtype"; + repo = pname; + rev = version; + sha256 = "0lh6024yf9ds0nh9i93r9m6p5psi8nvrqxl5x7jwl13zb0r9xfpw"; + }; + + buildInputs = [ alcotest ]; + propagatedBuildInputs = [ bigstringaf result ]; + doCheck = true; + + meta = { + homepage = https://github.com/inhabitedtype/angstrom; + description = "OCaml parser combinators built for speed and memory efficiency"; + license = stdenv.lib.licenses.bsd3; + maintainers = with stdenv.lib.maintainers; [ sternenseemann ]; + }; +} + + + + Here is a second example, this time using a source archive generated with + dune-release. It is a good idea to use this archive when + it is available as it will usually contain substituted variables such as a + %%VERSION%% field. This library does not depend + on any other OCaml library and no tests are run after building it. + + + +{ stdenv, fetchurl, buildDunePackage }: + +buildDunePackage rec { + pname = "wtf8"; + version = "1.0.1"; + + minimumOCamlVersion = "4.01"; + + src = fetchurl { + url = "https://github.com/flowtype/ocaml-${pname}/releases/download/v${version}/${pname}-${version}.tbz"; + sha256 = "1msg3vycd3k8qqj61sc23qks541cxpb97vrnrvrhjnqxsqnh6ygq"; + }; + + meta = with stdenv.lib; { + homepage = https://github.com/flowtype/ocaml-wtf8; + description = "WTF-8 is a superset of UTF-8 that allows unpaired surrogates."; + license = licenses.mit; + maintainers = [ maintainers.eqyiel ]; + }; +} + + +
diff --git a/doc/languages-frameworks/python.section.md b/doc/languages-frameworks/python.section.md index b52b79c62d91fc17576ad51b9b1e9c1fa731e228..68bfbe05879bcd9684f26b6605cb64a0b892c6ee 100644 --- a/doc/languages-frameworks/python.section.md +++ b/doc/languages-frameworks/python.section.md @@ -483,12 +483,12 @@ and in this case the `python35` interpreter is automatically used. ### Interpreters -Versions 2.7, 3.4, 3.5, 3.6 and 3.7 of the CPython interpreter are available as -respectively `python27`, `python34`, `python35` and `python36`. The PyPy interpreter -is available as `pypy`. The aliases `python2` and `python3` correspond to respectively `python27` and -`python35`. The default interpreter, `python`, maps to `python2`. -The Nix expressions for the interpreters can be found in -`pkgs/development/interpreters/python`. +Versions 2.7, 3.5, 3.6 and 3.7 of the CPython interpreter are available as +respectively `python27`, `python35`, `python36`, and `python37`. The PyPy +interpreter is available as `pypy`. The aliases `python2` and `python3` +correspond to respectively `python27` and `python36`. The default interpreter, +`python`, maps to `python2`. The Nix expressions for the interpreters can be +found in `pkgs/development/interpreters/python`. All packages depending on any Python interpreter get appended `out/{python.sitePackages}` to `$PYTHONPATH` if such directory @@ -507,7 +507,7 @@ Each interpreter has the following attributes: - `buildEnv`. Function to build python interpreter environments with extra packages bundled together. See section *python.buildEnv function* for usage and documentation. - `withPackages`. Simpler interface to `buildEnv`. See section *python.withPackages function* for usage and documentation. - `sitePackages`. Alias for `lib/${libPrefix}/site-packages`. -- `executable`. Name of the interpreter executable, e.g. `python3.4`. +- `executable`. Name of the interpreter executable, e.g. `python3.7`. - `pkgs`. Set of Python packages for that specific interpreter. The package set can be modified by overriding the interpreter and passing `packageOverrides`. ### Building packages and applications @@ -529,7 +529,6 @@ attribute set is created for each available Python interpreter. The available sets are * `pkgs.python27Packages` -* `pkgs.python34Packages` * `pkgs.python35Packages` * `pkgs.python36Packages` * `pkgs.python37Packages` @@ -670,7 +669,7 @@ python3Packages.buildPythonApplication rec { sha256 = "035w8gqql36zlan0xjrzz9j4lh9hs0qrsgnbyw07qs7lnkvbdv9x"; }; - propagatedBuildInputs = with python3Packages; [ tornado_4 pythondaemon ]; + propagatedBuildInputs = with python3Packages; [ tornado_4 python-daemon ]; meta = with lib; { ... @@ -837,7 +836,7 @@ community to help save time. No tool is preferred at the moment. ### Deterministic builds -Python 2.7, 3.5 and 3.6 are now built deterministically and 3.4 mostly. +The Python interpreters are now built deterministically. Minor modifications had to be made to the interpreters in order to generate deterministic bytecode. This has security implications and is relevant for those using Python in a `nix-shell`. diff --git a/doc/meta.xml b/doc/meta.xml index 496b32916552b4066ce11c290e7e0d047b9bacbe..3abfe016d70893267b53dc01a146bdb1e7e4daac 100644 --- a/doc/meta.xml +++ b/doc/meta.xml @@ -250,6 +250,60 @@ meta.platforms = stdenv.lib.platforms.linux; + + + tests + + + + + This attribute is special in that it is not actually under the + meta attribute set but rather under the + passthru attribute set. This is due to a current + limitation of Nix, and will change as soon as Nixpkgs will be able to + depend on a new enough version of Nix. See + the relevant + issue for more details. + + + + An attribute set with as values tests. A test is a derivation, which + builds successfully when the test passes, and fails to build otherwise. A + derivation that is a test needs to have meta.timeout + defined. + + + The NixOS tests are available as nixosTests in + parameters of derivations. For instance, the OpenSMTPD derivation + includes lines similar to: + +{ /* ... */, nixosTests }: +{ + # ... + passthru.tests = { + basic-functionality-and-dovecot-integration = nixosTests.opensmtpd; + }; +} + + + + + + + timeout + + + + A timeout (in seconds) for building the derivation. If the derivation + takes longer than this time to build, it can fail due to breaking the + timeout. However, all computers do not have the same computing power, + hence some builders may decide to apply a multiplicative factor to this + value. When filling this value in, try to keep it approximately + consistent with other values already present in + nixpkgs. + + + hydraPlatforms diff --git a/doc/quick-start.xml b/doc/quick-start.xml index b9e6d789404a8e0927096dba3bd5f4782260249d..8dd673ed2733fe8eea8610659862504e720da712 100644 --- a/doc/quick-start.xml +++ b/doc/quick-start.xml @@ -147,8 +147,8 @@ $ git add pkgs/development/libraries/libfoo/default.nix - You can use nix-prefetch-url (or similar - nix-prefetch-git, etc) url to get the + You can use nix-prefetch-url + url to get the SHA-256 hash of source distributions. There are similar commands as nix-prefetch-git and nix-prefetch-hg available in diff --git a/doc/stdenv.xml b/doc/stdenv.xml index b2f30bf08db12c67814a35106bf087a70d3942ef..ef45ec301a6b4f7f1787fd995b3bfbba50d0101a 100644 --- a/doc/stdenv.xml +++ b/doc/stdenv.xml @@ -618,7 +618,7 @@ let f(h, h + 1, i) = i + h - Variables affecting build properties + Attributes affecting build properties enableParallelBuilding @@ -637,21 +637,6 @@ let f(h, h + 1, i) = i + h - - - preferLocalBuild - - - - If set, specifies that the package is so lightweight in terms of build - operations (e.g. write a text file from a Nix string to the store) that - there's no need to look for it in binary caches -- it's faster to just - build it locally. It also tells Hydra and other facilities that this - package doesn't need to be exported in binary caches (noone would use it, - after all). - - - diff --git a/lib/licenses.nix b/lib/licenses.nix index 940baf53b7c3789e50d73eb86973bdfea840c452..e3803c098c72cdfc88b8a4e1167a5f00fee53587 100644 --- a/lib/licenses.nix +++ b/lib/licenses.nix @@ -13,6 +13,11 @@ lib.mapAttrs (n: v: v // { shortName = n; }) rec { * add it to this list. The URL mentioned above is a good source for inspiration. */ + abstyles = spdx { + spdxId = "Abstyles"; + fullName = "Abstyles License"; + }; + afl21 = spdx { spdxId = "AFL-2.1"; fullName = "Academic Free License v2.1"; @@ -400,6 +405,10 @@ lib.mapAttrs (n: v: v // { shortName = n; }) rec { free = false; }; + jasper = spdx { + spdxId = "JasPer-2.0"; + fullName = "JasPer License"; + }; lgpl2 = spdx { spdxId = "LGPL-2.0"; diff --git a/lib/sources.nix b/lib/sources.nix index e64b23414e866c9a818b60a57702c93e459b0910..1a9f3f7d1f343b8a2b023f3394ecab30f1abefd3 100644 --- a/lib/sources.nix +++ b/lib/sources.nix @@ -73,7 +73,7 @@ rec { # Get the commit id of a git repo # Example: commitIdFromGitRepo commitIdFromGitRepo = - let readCommitFromFile = path: file: + let readCommitFromFile = file: path: with builtins; let fileName = toString path + "/" + file; packedRefsName = toString path + "/packed-refs"; @@ -85,7 +85,7 @@ rec { matchRef = match "^ref: (.*)$" fileContent; in if isNull matchRef then fileContent - else readCommitFromFile path (lib.head matchRef) + else readCommitFromFile (lib.head matchRef) path # Sometimes, the file isn't there at all and has been packed away in the # packed-refs file, so we have to grep through it: else if lib.pathExists packedRefsName @@ -96,7 +96,7 @@ rec { then throw ("Could not find " + file + " in " + packedRefsName) else lib.head matchRef else throw ("Not a .git directory: " + path); - in lib.flip readCommitFromFile "HEAD"; + in readCommitFromFile "HEAD"; pathHasContext = builtins.hasContext or (lib.hasPrefix builtins.storeDir); diff --git a/lib/systems/default.nix b/lib/systems/default.nix index 8f5ef44ae72f29cd48e7278c70734654b8f36674..0b3475fefb9cedfe8b6aaf4f82f58bfd01ab2d69 100644 --- a/lib/systems/default.nix +++ b/lib/systems/default.nix @@ -32,6 +32,7 @@ rec { else if final.isUClibc then "uclibc" else if final.isAndroid then "bionic" else if final.isLinux /* default */ then "glibc" + else if final.isAvr then "avrlibc" # TODO(@Ericson2314) think more about other operating systems else "native/impure"; extensions = { diff --git a/lib/systems/examples.nix b/lib/systems/examples.nix index 8ba03a63fd8df5d65d6ca58bcd262ae487ca2cf1..acd673df666fb49f46377945fc220cc612d22128 100644 --- a/lib/systems/examples.nix +++ b/lib/systems/examples.nix @@ -99,6 +99,49 @@ rec { riscv64 = riscv "64"; riscv32 = riscv "32"; + avr = { + config = "avr"; + }; + + arm-embedded = { + config = "arm-none-eabi"; + libc = "newlib"; + }; + + aarch64-embedded = { + config = "aarch64-none-elf"; + libc = "newlib"; + }; + + aarch64be-embedded = { + config = "aarch64_be-none-elf"; + libc = "newlib"; + }; + + ppc-embedded = { + config = "powerpc-none-eabi"; + libc = "newlib"; + }; + + ppcle-embedded = { + config = "powerpcle-none-eabi"; + libc = "newlib"; + }; + + alpha-embedded = { + config = "alpha-elf"; + libc = "newlib"; + }; + + i686-embedded = { + config = "i686-elf"; + libc = "newlib"; + }; + + x86_64-embedded = { + config = "x86_64-elf"; + libc = "newlib"; + }; # # Darwin diff --git a/lib/systems/inspect.nix b/lib/systems/inspect.nix index 65f560328af536b764142e7eb769661d49d78b7a..2fcf1afe4628747f27eb3d250c19e3612303e604 100644 --- a/lib/systems/inspect.nix +++ b/lib/systems/inspect.nix @@ -19,6 +19,7 @@ rec { isRiscV = { cpu = { family = "riscv"; }; }; isSparc = { cpu = { family = "sparc"; }; }; isWasm = { cpu = { family = "wasm"; }; }; + isAvr = { cpu = { family = "avr"; }; }; is32bit = { cpu = { bits = 32; }; }; is64bit = { cpu = { bits = 64; }; }; diff --git a/lib/systems/parse.nix b/lib/systems/parse.nix index bb26c93f3d7aa774e1664217b4fce5a14242d0c6..be73a6d252f0f40ca8f1b11f53ddd1c0734118ef 100644 --- a/lib/systems/parse.nix +++ b/lib/systems/parse.nix @@ -80,6 +80,7 @@ rec { armv8r = { bits = 32; significantByte = littleEndian; family = "arm"; version = "8"; }; armv8m = { bits = 32; significantByte = littleEndian; family = "arm"; version = "8"; }; aarch64 = { bits = 64; significantByte = littleEndian; family = "arm"; version = "8"; }; + aarch64_be = { bits = 64; significantByte = bigEndian; family = "arm"; version = "8"; }; i686 = { bits = 32; significantByte = littleEndian; family = "x86"; }; x86_64 = { bits = 64; significantByte = littleEndian; family = "x86"; }; @@ -92,6 +93,7 @@ rec { powerpc = { bits = 32; significantByte = bigEndian; family = "power"; }; powerpc64 = { bits = 64; significantByte = bigEndian; family = "power"; }; powerpc64le = { bits = 64; significantByte = littleEndian; family = "power"; }; + powerpcle = { bits = 32; significantByte = littleEndian; family = "power"; }; riscv32 = { bits = 32; significantByte = littleEndian; family = "riscv"; }; riscv64 = { bits = 64; significantByte = littleEndian; family = "riscv"; }; @@ -101,6 +103,10 @@ rec { wasm32 = { bits = 32; significantByte = littleEndian; family = "wasm"; }; wasm64 = { bits = 64; significantByte = littleEndian; family = "wasm"; }; + + alpha = { bits = 64; significantByte = littleEndian; family = "alpha"; }; + + avr = { bits = 8; family = "avr"; }; }; ################################################################################ @@ -117,6 +123,7 @@ rec { apple = {}; pc = {}; + none = {}; unknown = {}; }; @@ -200,6 +207,7 @@ rec { cygnus = {}; msvc = {}; eabi = {}; + elf = {}; androideabi = {}; android = { @@ -255,9 +263,16 @@ rec { setType "system" components; mkSkeletonFromList = l: { + "1" = if elemAt l 0 == "avr" + then { cpu = elemAt l 0; kernel = "none"; abi = "unknown"; } + else throw "Target specification with 1 components is ambiguous"; "2" = # We only do 2-part hacks for things Nix already supports if elemAt l 1 == "cygwin" then { cpu = elemAt l 0; kernel = "windows"; abi = "cygnus"; } + else if (elemAt l 1 == "eabi") + then { cpu = elemAt l 0; vendor = "none"; kernel = "none"; abi = elemAt l 1; } + else if (elemAt l 1 == "elf") + then { cpu = elemAt l 0; vendor = "none"; kernel = "none"; abi = elemAt l 1; } else { cpu = elemAt l 0; kernel = elemAt l 1; }; "3" = # Awkwards hacks, beware! if elemAt l 1 == "apple" @@ -268,6 +283,10 @@ rec { then { cpu = elemAt l 0; vendor = elemAt l 1; kernel = "windows"; abi = "gnu"; } else if hasPrefix "netbsd" (elemAt l 2) then { cpu = elemAt l 0; vendor = elemAt l 1; kernel = elemAt l 2; } + else if (elemAt l 2 == "eabi") + then { cpu = elemAt l 0; vendor = elemAt l 1; kernel = "none"; abi = elemAt l 2; } + else if (elemAt l 2 == "elf") + then { cpu = elemAt l 0; vendor = elemAt l 1; kernel = "none"; abi = elemAt l 2; } else throw "Target specification with 3 components is ambiguous"; "4" = { cpu = elemAt l 0; vendor = elemAt l 1; kernel = elemAt l 2; abi = elemAt l 3; }; }.${toString (length l)} diff --git a/lib/systems/platforms.nix b/lib/systems/platforms.nix index 56783d99e3d43fc7a8b2af1200cb0849f5cdb91a..1ed072e94645a6c1f5342aeef1f8eeee3a753bf9 100644 --- a/lib/systems/platforms.nix +++ b/lib/systems/platforms.nix @@ -471,6 +471,7 @@ rec { "x86_64-linux" = pc64; "armv5tel-linux" = sheevaplug; "armv6l-linux" = raspberrypi; + "armv7a-linux" = armv7l-hf-multiplatform; "armv7l-linux" = armv7l-hf-multiplatform; "aarch64-linux" = aarch64-multiplatform; "mipsel-linux" = fuloong2f_n32; diff --git a/lib/types.nix b/lib/types.nix index ca6794e274c31b626b8314ca1d6efce174fa03d4..d1ece2402ad7fa5dc80d866a77fbfcb4cdcd8742 100644 --- a/lib/types.nix +++ b/lib/types.nix @@ -169,6 +169,9 @@ rec { # s32 = sign 32 4294967296; }; + # Alias of u16 for a port number + port = ints.u16; + float = mkOptionType rec { name = "float"; description = "floating point number"; diff --git a/maintainers/maintainer-list.nix b/maintainers/maintainer-list.nix index a9116f4117678fe15633947e8b9c2805013892a9..6c57edb074bb5ddad57f217a43d1a6186ed54944 100644 --- a/maintainers/maintainer-list.nix +++ b/maintainers/maintainer-list.nix @@ -143,6 +143,11 @@ github = "ahmedtd"; name = "Taahir Ahmed"; }; + ahuzik = { + email = "ales.guzik@gmail.com"; + github = "alesguzik"; + name = "Ales Huzik"; + }; aij = { email = "aij+git@mrph.org"; github = "aij"; @@ -211,6 +216,11 @@ github = "alunduil"; name = "Alex Brandt"; }; + amar1729 = { + email = "amar.paul16@gmail.com"; + github = "amar1729"; + name = "Amar Paul"; + }; ambrop72 = { email = "ambrop7@gmail.com"; github = "ambrop72"; @@ -401,6 +411,11 @@ github = "AveryLychee"; name = "Avery Lychee"; }; + averelld = { + email = "averell+nixos@rxd4.com"; + github = "averelld"; + name = "averelld"; + }; avnik = { email = "avn@avnik.info"; github = "avnik"; @@ -614,6 +629,11 @@ github = "bramd"; name = "Bram Duvigneau"; }; + braydenjw = { + email = "nixpkgs@willenborg.ca"; + github = "braydenjw"; + name = "Brayden Willenborg"; + }; brian-dawn = { email = "brian.t.dawn@gmail.com"; github = "brian-dawn"; @@ -952,6 +972,11 @@ github = "danielfullmer"; name = "Daniel Fullmer"; }; + das-g = { + email = "nixpkgs@raphael.dasgupta.ch"; + github = "das-g"; + name = "Raphael Das Gupta"; + }; das_j = { email = "janne@hess.ooo"; github = "dasJ"; @@ -1507,6 +1532,11 @@ github = "ftrvxmtrx"; name = "Siarhei Zirukin"; }; + fuerbringer = { + email = "severin@fuerbringer.info"; + github = "fuerbringer"; + name = "Severin Fürbringer"; + }; funfunctor = { email = "eocallaghan@alterapraxis.com"; name = "Edward O'Callaghan"; @@ -1516,6 +1546,11 @@ github = "fuuzetsu"; name = "Mateusz Kowalczyk"; }; + fuwa = { + email = "echowss@gmail.com"; + github = "fuwa0529"; + name = "Haruka Akiyama"; + }; fuzzy-id = { email = "hacking+nixos@babibo.de"; name = "Thomas Bach"; @@ -1734,6 +1769,11 @@ email = "t@larkery.com"; name = "Tom Hinton"; }; + hlolli = { + email = "hlolli@gmail.com"; + github = "hlolli"; + name = "Hlodver Sigurdsson"; + }; hodapp = { email = "hodapp87@gmail.com"; github = "Hodapp87"; @@ -2214,6 +2254,11 @@ github = "knedlsepp"; name = "Josef Kemetmüller"; }; + knl = { + email = "nikola@knezevic.co"; + github = "knl"; + name = "Nikola Knežević"; + }; konimex = { email = "herdiansyah@netc.eu"; github = "konimex"; @@ -2661,6 +2706,11 @@ github = "melsigl"; name = "Melanie B. Sigl"; }; + melkor333 = { + email = "samuel@ton-kunst.ch"; + github = "melkor333"; + name = "Samuel Ruprecht"; + }; metabar = { email = "softs@metabarcoding.org"; name = "Celine Mercier"; @@ -2670,6 +2720,11 @@ github = "mgdelacroix"; name = "Miguel de la Cruz"; }; + mgregoire = { + email = "gregoire@martinache.net"; + github = "M-Gregoire"; + name = "Gregoire Martinache"; + }; mgttlinger = { email = "megoettlinger@gmail.com"; github = "mgttlinger"; @@ -3795,6 +3850,11 @@ github = "scolobb"; name = "Sergiu Ivanov"; }; + screendriver = { + email = "nix@echooff.de"; + github = "screendriver"; + name = "Christian Rackerseder"; + }; Scriptkiddi = { email = "nixos@scriptkiddi.de"; github = "scriptkiddi"; @@ -3905,6 +3965,11 @@ github = "sjagoe"; name = "Simon Jagoe"; }; + sjau = { + email = "nixos@sjau.ch"; + github = "sjau"; + name = "Stephan Jau"; + }; sjmackenzie = { email = "setori88@gmail.com"; github = "sjmackenzie"; @@ -3973,6 +4038,11 @@ github = "spacefrogg"; name = "Michael Raitza"; }; + spacekookie = { + email = "kookie@spacekookie.de"; + github = "spacekookie"; + name = "Katharina Fey"; + }; spencerjanssen = { email = "spencerjanssen@gmail.com"; github = "spencerjanssen"; @@ -4153,6 +4223,11 @@ github = "taku0"; name = "Takuo Yonezawa"; }; + talyz = { + email = "kim.lindberger@gmail.com"; + github = "talyz"; + name = "Kim Lindberger"; + }; tari = { email = "peter@taricorp.net"; github = "tari"; @@ -4193,6 +4268,11 @@ github = "tex"; name = "Milan Svoboda"; }; + tg-x = { + email = "*@tg-x.net"; + github = "tg-x"; + name = "TG ⊗ Θ"; + }; thall = { email = "niclas.thall@gmail.com"; github = "thall"; diff --git a/nixos/doc/manual/administration/declarative-containers.xml b/nixos/doc/manual/administration/declarative-containers.xml index 2a98fb1262310275849d0451221f3fc671b04a47..d03dbc4d70556cefe5223f7d8eb496345237bb23 100644 --- a/nixos/doc/manual/administration/declarative-containers.xml +++ b/nixos/doc/manual/administration/declarative-containers.xml @@ -15,7 +15,7 @@ containers.database = { config = { config, pkgs, ... }: { = true; - = pkgs.postgresql96; + = pkgs.postgresql_9_6; }; }; diff --git a/nixos/doc/manual/configuration/config-file.xml b/nixos/doc/manual/configuration/config-file.xml index 8a1a39c98c10d3dec9e919959b24b5c7e6d5d276..c77cfe137baa2cb68340bf6d2a93a2dee778fd83 100644 --- a/nixos/doc/manual/configuration/config-file.xml +++ b/nixos/doc/manual/configuration/config-file.xml @@ -197,10 +197,10 @@ swapDevices = [ { device = "/dev/disk/by-label/swap"; } ]; pkgs.emacs ]; - = pkgs.postgresql90; + = pkgs.postgresql_10; The latter option definition changes the default PostgreSQL package used - by NixOS’s PostgreSQL service to 9.0. For more information on packages, + by NixOS’s PostgreSQL service to 10.x. For more information on packages, including how to add new ones, see . diff --git a/nixos/doc/manual/configuration/firewall.xml b/nixos/doc/manual/configuration/firewall.xml index b66adcedce6e888ce613ede9e4db7f9a03fa85cd..47a19ac82c0fea6b9e67f84f7743507cd6da6b22 100644 --- a/nixos/doc/manual/configuration/firewall.xml +++ b/nixos/doc/manual/configuration/firewall.xml @@ -34,13 +34,4 @@ Similarly, UDP port ranges can be opened through . - - - Also of interest is - - = true; - - to allow the machine to respond to ping requests. (ICMPv6 pings are always - allowed.) - diff --git a/nixos/doc/manual/development/option-types.xml b/nixos/doc/manual/development/option-types.xml index e6c9eae11a728d47355d5cd59e7f329c8f0ab088..d993e47bc914bcb32e95d22f1f2bd939b68c8b4e 100644 --- a/nixos/doc/manual/development/option-types.xml +++ b/nixos/doc/manual/development/option-types.xml @@ -106,7 +106,7 @@ - + types.ints.{u8, u16, u32} @@ -131,6 +131,17 @@ + + + types.port + + + + A port number. This type is an alias to + types.ints.u16. + + + diff --git a/nixos/doc/manual/release-notes/rl-1809.xml b/nixos/doc/manual/release-notes/rl-1809.xml index 0ddf40acbfcc6b410f9b3aae02de5de909d57459..8715a05f508b6e85c5947db0570c580d034e60a4 100644 --- a/nixos/doc/manual/release-notes/rl-1809.xml +++ b/nixos/doc/manual/release-notes/rl-1809.xml @@ -637,6 +637,11 @@ $ nix-instantiate -E '(import <nixpkgsunstable> {}).gitFull' anyways for clarity. + + + Groups kvm and render are introduced now, as systemd requires them. + + diff --git a/nixos/doc/manual/release-notes/rl-1903.xml b/nixos/doc/manual/release-notes/rl-1903.xml index 7d04d009a060e3c5452d7842b88ba25bb293311b..a1f715a3adf16d3a7a31017563b2a112c2b9816f 100644 --- a/nixos/doc/manual/release-notes/rl-1903.xml +++ b/nixos/doc/manual/release-notes/rl-1903.xml @@ -99,6 +99,16 @@ + + + The Syncthing state and configuration data has been moved from + services.syncthing.dataDir to the newly defined + services.syncthing.configDir, which default to + /var/lib/syncthing/.config/syncthing. + This change makes possible to share synced directories using ACLs + without Syncthing resetting the permission on every start. + + Package rabbitmq_server is renamed to @@ -137,6 +147,14 @@ make sure to update your configuration if you want to keep proglodyte-wasm + + + When the nixpkgs.pkgs option is set, NixOS will no + longer ignore the nixpkgs.overlays option. The old + behavior can be recovered by setting nixpkgs.overlays = + lib.mkForce [];. + + OpenSMTPD has been upgraded to version 6.4.0p1. This release makes @@ -145,6 +163,63 @@ format. + + + The versioned postgresql have been renamed to use + underscore number seperators. For example, postgresql96 + has been renamed to postgresql_9_6. + + + + + Package consul-ui and passthrough consul.ui have been removed. + The package consul now uses upstream releases that vendor the UI into the binary. + See #48714 + for details. + + + + + Slurm introduces the new option + services.slurm.stateSaveLocation, + which is now set to /var/spool/slurm by default + (instead of /var/spool). + Make sure to move all files to the new directory or to set the option accordingly. + + + The slurmctld now runs as user slurm instead of root. + If you want to keep slurmctld running as root, set + services.slurm.user = root. + + + The options services.slurm.nodeName and + services.slurm.partitionName are now sets of + strings to correctly reflect that fact that each of these + options can occour more than once in the configuration. + + + + + The solr package has been upgraded from 4.10.3 to 7.5.0 and has undergone + some major changes. The services.solr module has been updated to reflect + these changes. Please review http://lucene.apache.org/solr/ carefully before upgrading. + + + + + Package ckb is renamed to ckb-next, + and options hardware.ckb.* are renamed to + hardware.ckb-next.*. + + + + + The option services.xserver.displayManager.job.logToFile which was + previously set to true when using the display managers + lightdm, sddm or xpra has been + reset to the default value (false). + + @@ -172,6 +247,19 @@ supports loading TrueCrypt volumes. + + + The Kubernetes DNS addons, kube-dns, has been replaced with CoreDNS. + This change is made in accordance with Kubernetes making CoreDNS the official default + starting from + Kubernetes v1.11. + Please beware that upgrading DNS-addon on existing clusters might induce + minor downtime while the DNS-addon terminates and re-initializes. + Also note that the DNS-service now runs with 2 pod replicas by default. + The desired number of replicas can be configured using: + . + + diff --git a/nixos/lib/build-vms.nix b/nixos/lib/build-vms.nix index 4f65501f89c64874e002b56a61ebe1cf66cba275..933f81392491c2b10da6e79aff78cb3f45c28c5c 100644 --- a/nixos/lib/build-vms.nix +++ b/nixos/lib/build-vms.nix @@ -1,6 +1,4 @@ -{ system, minimal ? false, config ? {} }: - -let pkgs = import ../.. { inherit system config; }; in +{ system, pkgs, minimal ? false, config ? {} }: with pkgs.lib; with import ../lib/qemu-flags.nix { inherit pkgs; }; diff --git a/nixos/lib/make-channel.nix b/nixos/lib/make-channel.nix index fd805f7f943f21a4f0febfdf1e05029ce1a52c49..9b920b989fcf36140e205be719c46d63f1d53f98 100644 --- a/nixos/lib/make-channel.nix +++ b/nixos/lib/make-channel.nix @@ -1,3 +1,7 @@ +/* Build a channel tarball. These contain, in addition to the nixpkgs + * expressions themselves, files that indicate the version of nixpkgs + * that they represent. + */ { pkgs, nixpkgs, version, versionSuffix }: pkgs.releaseTools.makeSourceTarball { diff --git a/nixos/lib/testing.nix b/nixos/lib/testing.nix index 42a0c60c7e19c893ad57d49a9b03ddb0f6e19a6d..f90fc9f7df0e57ac08b86f93c7aad481ba9c2857 100644 --- a/nixos/lib/testing.nix +++ b/nixos/lib/testing.nix @@ -1,6 +1,6 @@ -{ system, minimal ? false, config ? {} }: +{ system, pkgs, minimal ? false, config ? {} }: -with import ./build-vms.nix { inherit system minimal config; }; +with import ./build-vms.nix { inherit system pkgs minimal config; }; with pkgs; let @@ -69,7 +69,7 @@ in rec { mkdir -p $out/coverage-data mv $i $out/coverage-data/$(dirname $(dirname $i)) done - ''; # */ + ''; }; diff --git a/nixos/modules/config/gtk/gtk-icon-cache.nix b/nixos/modules/config/gtk/gtk-icon-cache.nix new file mode 100644 index 0000000000000000000000000000000000000000..d4e0cf97c660e1882017dcd28d9028e3abf97fa1 --- /dev/null +++ b/nixos/modules/config/gtk/gtk-icon-cache.nix @@ -0,0 +1,86 @@ +{ config, lib, pkgs, ... }: + +with lib; +{ + options = { + gtk.iconCache.enable = mkOption { + type = types.bool; + default = true; + description = '' + Whether to build icon theme caches for GTK+ applications. + ''; + }; + }; + + config = mkIf config.gtk.iconCache.enable { + + # (Re)build icon theme caches + # --------------------------- + # Each icon theme has its own cache. The difficult is that many + # packages may contribute with icons to the same theme by installing + # some icons. + # + # For instance, on my current NixOS system, the following packages + # (among many others) have icons installed into the hicolor icon + # theme: hicolor-icon-theme, psensor, wpa_gui, caja, etc. + # + # As another example, the mate icon theme has icons installed by the + # packages mate-icon-theme, mate-settings-daemon, and libmateweather. + # + # The HighContrast icon theme also has icons from different packages, + # like gnome-theme-extras and meld. + + # When the cache is built all of its icons has to be known. How to + # implement this? + # + # I think that most themes have all icons installed by only one + # package. On my system there are 71 themes installed. Only 3 of them + # have icons installed from more than one package. + # + # If the main package of the theme provides a cache, presumably most + # of its icons will be available to applications without running this + # module. But additional icons offered by other packages will not be + # available. Therefore I think that it is good that the main theme + # package installs a cache (although it does not completely fixes the + # situation for packages installed with nix-env). + # + # The module solution presented here keeps the cache when there is + # only one package contributing with icons to the theme. Otherwise it + # rebuilds the cache taking into account the icons provided all + # packages. + + environment.extraSetup = '' + # For each icon theme directory ... + + find $out/share/icons -mindepth 1 -maxdepth 1 -print0 | while read -d $'\0' themedir + do + + # In order to build the cache, the theme dir should be + # writable. When the theme dir is a symbolic link to somewhere + # in the nix store it is not writable and it means that only + # one package is contributing to the theme. If it already has + # a cache, no rebuild is needed. Otherwise a cache has to be + # built, and to be able to do that we first remove the + # symbolic link and make a directory, and then make symbolic + # links from the original directory into the new one. + + if [ ! -w "$themedir" -a -L "$themedir" -a ! -r "$themedir"/icon-theme.cache ]; then + name=$(basename "$themedir") + path=$(readlink -f "$themedir") + rm "$themedir" + mkdir -p "$themedir" + ln -s "$path"/* "$themedir"/ + fi + + # (Re)build the cache if the theme dir is writable, replacing any + # existing cache for the theme + + if [ -w "$themedir" ]; then + rm -f "$themedir"/icon-theme.cache + ${pkgs.gtk3.out}/bin/gtk-update-icon-cache --ignore-theme-index "$themedir" + fi + done + ''; + }; + +} diff --git a/nixos/modules/config/networking.nix b/nixos/modules/config/networking.nix index 1eb6fb43604a3eb6be74acdb55d2e853e0b3cd51..e6b49d4c2194278ab8166b38c6566053852060f4 100644 --- a/nixos/modules/config/networking.nix +++ b/nixos/modules/config/networking.nix @@ -228,9 +228,6 @@ in # /etc/protocols: IP protocol numbers. "protocols".source = pkgs.iana-etc + "/etc/protocols"; - # /etc/rpc: RPC program numbers. - "rpc".source = pkgs.glibc.out + "/etc/rpc"; - # /etc/hosts: Hostname-to-IP mappings. "hosts".text = let oneToString = set: ip: ip + " " + concatStringsSep " " set.${ip}; @@ -263,11 +260,14 @@ in ''; } // optionalAttrs config.services.resolved.enable { - # symlink the static version of resolv.conf as recommended by upstream: + # symlink the dynamic stub resolver of resolv.conf as recommended by upstream: # https://www.freedesktop.org/software/systemd/man/systemd-resolved.html#/etc/resolv.conf - "resolv.conf".source = "${pkgs.systemd}/lib/systemd/resolv.conf"; + "resolv.conf".source = "/run/systemd/resolve/stub-resolv.conf"; } // optionalAttrs (config.services.resolved.enable && dnsmasqResolve) { "dnsmasq-resolv.conf".source = "/run/systemd/resolve/resolv.conf"; + } // optionalAttrs (pkgs.stdenv.hostPlatform.libc == "glibc") { + # /etc/rpc: RPC program numbers. + "rpc".source = pkgs.glibc.out + "/etc/rpc"; }; networking.proxy.envVars = diff --git a/nixos/modules/config/pulseaudio.nix b/nixos/modules/config/pulseaudio.nix index d4aa59506295f20ccb721014931f51b06297ea53..67f7105fe2fe4fde6faa4ca355b85b9768975b85 100644 --- a/nixos/modules/config/pulseaudio.nix +++ b/nixos/modules/config/pulseaudio.nix @@ -1,4 +1,4 @@ -{ config, lib, pkgs, pkgs_i686, ... }: +{ config, lib, pkgs, ... }: with pkgs; with lib; @@ -19,7 +19,7 @@ let # Forces 32bit pulseaudio and alsaPlugins to be built/supported for apps # using 32bit alsa on 64bit linux. - enable32BitAlsaPlugins = cfg.support32Bit && stdenv.isx86_64 && (pkgs_i686.alsaLib != null && pkgs_i686.libpulseaudio != null); + enable32BitAlsaPlugins = cfg.support32Bit && stdenv.isx86_64 && (pkgs.pkgsi686Linux.alsaLib != null && pkgs.pkgsi686Linux.libpulseaudio != null); myConfigFile = @@ -63,7 +63,7 @@ let pcm_type.pulse { libs.native = ${pkgs.alsaPlugins}/lib/alsa-lib/libasound_module_pcm_pulse.so ; ${lib.optionalString enable32BitAlsaPlugins - "libs.32Bit = ${pkgs_i686.alsaPlugins}/lib/alsa-lib/libasound_module_pcm_pulse.so ;"} + "libs.32Bit = ${pkgs.pkgsi686Linux.alsaPlugins}/lib/alsa-lib/libasound_module_pcm_pulse.so ;"} } pcm.!default { type pulse @@ -72,7 +72,7 @@ let ctl_type.pulse { libs.native = ${pkgs.alsaPlugins}/lib/alsa-lib/libasound_module_ctl_pulse.so ; ${lib.optionalString enable32BitAlsaPlugins - "libs.32Bit = ${pkgs_i686.alsaPlugins}/lib/alsa-lib/libasound_module_ctl_pulse.so ;"} + "libs.32Bit = ${pkgs.pkgsi686Linux.alsaPlugins}/lib/alsa-lib/libasound_module_ctl_pulse.so ;"} } ctl.!default { type pulse diff --git a/nixos/modules/config/system-path.nix b/nixos/modules/config/system-path.nix index c07e19bd03c499bc4a06d79e640cf4aad4e057f7..aece7aa67ac3c151f251b731e7b243d5d33acf43 100644 --- a/nixos/modules/config/system-path.nix +++ b/nixos/modules/config/system-path.nix @@ -19,7 +19,9 @@ let pkgs.diffutils pkgs.findutils pkgs.gawk - pkgs.glibc # for ldd, getent + pkgs.stdenv.cc.libc + pkgs.getent + pkgs.getconf pkgs.gnugrep pkgs.gnupatch pkgs.gnused @@ -133,10 +135,6 @@ in # outputs TODO: note that the tools will often not be linked by default postBuild = '' - if [ -x $out/bin/gtk-update-icon-cache -a -f $out/share/icons/hicolor/index.theme ]; then - $out/bin/gtk-update-icon-cache $out/share/icons/hicolor - fi - if [ -x $out/bin/glib-compile-schemas -a -w $out/share/glib-2.0/schemas ]; then $out/bin/glib-compile-schemas $out/share/glib-2.0/schemas fi diff --git a/nixos/modules/hardware/ckb.nix b/nixos/modules/hardware/ckb-next.nix similarity index 64% rename from nixos/modules/hardware/ckb.nix rename to nixos/modules/hardware/ckb-next.nix index 8429572a8822644bbf628ee223d87bfb18cb66cc..a275fb8fd60495bc1952a9831d62a12cf024b7c2 100644 --- a/nixos/modules/hardware/ckb.nix +++ b/nixos/modules/hardware/ckb-next.nix @@ -3,17 +3,17 @@ with lib; let - cfg = config.hardware.ckb; + cfg = config.hardware.ckb-next; in { - options.hardware.ckb = { + options.hardware.ckb-next = { enable = mkEnableOption "the Corsair keyboard/mouse driver"; package = mkOption { type = types.package; - default = pkgs.ckb; - defaultText = "pkgs.ckb"; + default = pkgs.ckb-next; + defaultText = "pkgs.ckb-next"; description = '' The package implementing the Corsair keyboard/mouse driver. ''; @@ -23,12 +23,12 @@ in config = mkIf cfg.enable { environment.systemPackages = [ cfg.package ]; - systemd.services.ckb = { - description = "Corsair Keyboard Daemon"; + systemd.services.ckb-next = { + description = "Corsair Keyboards and Mice Daemon"; wantedBy = ["multi-user.target"]; - script = "${cfg.package}/bin/ckb-daemon"; + script = "exec ${cfg.package}/bin/ckb-next-daemon"; serviceConfig = { - Restart = "always"; + Restart = "on-failure"; StandardOutput = "syslog"; }; }; diff --git a/nixos/modules/hardware/opengl.nix b/nixos/modules/hardware/opengl.nix index 46d06d71333a5055f67932a2f99d8d974a745b50..48e0072e0892232d79215c0977dbb96b2d41b722 100644 --- a/nixos/modules/hardware/opengl.nix +++ b/nixos/modules/hardware/opengl.nix @@ -1,4 +1,4 @@ -{ config, lib, pkgs, pkgs_i686, ... }: +{ config, lib, pkgs, ... }: with lib; @@ -148,7 +148,7 @@ in [ "/run/opengl-driver/share" ] ++ optional cfg.driSupport32Bit "/run/opengl-driver-32/share"; hardware.opengl.package = mkDefault (makePackage pkgs); - hardware.opengl.package32 = mkDefault (makePackage pkgs_i686); + hardware.opengl.package32 = mkDefault (makePackage pkgs.pkgsi686Linux); boot.extraModulePackages = optional (elem "virtualbox" videoDrivers) kernelPackages.virtualboxGuestAdditions; }; diff --git a/nixos/modules/hardware/video/amdgpu-pro.nix b/nixos/modules/hardware/video/amdgpu-pro.nix index 50af022b93c86e54c0680afab7f1920ef6f053ef..ab9e0c92020e0c49a0b118753d548fb721085906 100644 --- a/nixos/modules/hardware/video/amdgpu-pro.nix +++ b/nixos/modules/hardware/video/amdgpu-pro.nix @@ -1,6 +1,6 @@ # This module provides the proprietary AMDGPU-PRO drivers. -{ config, lib, pkgs, pkgs_i686, ... }: +{ config, lib, pkgs, ... }: with lib; @@ -11,7 +11,7 @@ let enabled = elem "amdgpu-pro" drivers; package = config.boot.kernelPackages.amdgpu-pro; - package32 = pkgs_i686.linuxPackages.amdgpu-pro.override { libsOnly = true; kernel = null; }; + package32 = pkgs.pkgsi686Linux.linuxPackages.amdgpu-pro.override { libsOnly = true; kernel = null; }; opengl = config.hardware.opengl; diff --git a/nixos/modules/hardware/video/ati.nix b/nixos/modules/hardware/video/ati.nix index 2fa37af6ca58836d8c82fb0223f8af066dedda67..6102919f0155f78202a438173a2f3cc87647e308 100644 --- a/nixos/modules/hardware/video/ati.nix +++ b/nixos/modules/hardware/video/ati.nix @@ -1,6 +1,6 @@ # This module provides the proprietary ATI X11 / OpenGL drivers. -{ config, lib, pkgs_i686, ... }: +{ config, lib, pkgs, ... }: with lib; @@ -24,7 +24,7 @@ in { name = "fglrx"; modules = [ ati_x11 ]; libPath = [ "${ati_x11}/lib" ]; }; hardware.opengl.package = ati_x11; - hardware.opengl.package32 = pkgs_i686.linuxPackages.ati_drivers_x11.override { libsOnly = true; kernel = null; }; + hardware.opengl.package32 = pkgs.pkgsi686Linux.linuxPackages.ati_drivers_x11.override { libsOnly = true; kernel = null; }; environment.systemPackages = [ ati_x11 ]; diff --git a/nixos/modules/hardware/video/nvidia.nix b/nixos/modules/hardware/video/nvidia.nix index f8524ab99e8ab8c9f16ffaf05bc92e73c7b300ba..21e12395498c31ae28e60c813c59ec7945bd5a32 100644 --- a/nixos/modules/hardware/video/nvidia.nix +++ b/nixos/modules/hardware/video/nvidia.nix @@ -1,6 +1,6 @@ # This module provides the proprietary NVIDIA X11 / OpenGL drivers. -{ stdenv, config, lib, pkgs, pkgs_i686, ... }: +{ stdenv, config, lib, pkgs, ... }: with lib; @@ -25,7 +25,7 @@ let nvidia_x11 = nvidiaForKernel config.boot.kernelPackages; nvidia_libs32 = if versionOlder nvidia_x11.version "391" then - ((nvidiaForKernel pkgs_i686.linuxPackages).override { libsOnly = true; kernel = null; }).out + ((nvidiaForKernel pkgs.pkgsi686Linux.linuxPackages).override { libsOnly = true; kernel = null; }).out else (nvidiaForKernel config.boot.kernelPackages).lib32; diff --git a/nixos/modules/installer/tools/nixos-build-vms/build-vms.nix b/nixos/modules/installer/tools/nixos-build-vms/build-vms.nix index 4372d196261e969d59da8ab5604383db2bee748e..2625f7661b781321396c9d6a8fbd9e3873116aaa 100644 --- a/nixos/modules/installer/tools/nixos-build-vms/build-vms.nix +++ b/nixos/modules/installer/tools/nixos-build-vms/build-vms.nix @@ -1,9 +1,13 @@ { system ? builtins.currentSystem +, config ? {} , networkExpr }: let nodes = import networkExpr; in -with import ../../../../lib/testing.nix { inherit system; }; +with import ../../../../lib/testing.nix { + inherit system; + pkgs = import ../.. { inherit system config; }; +}; (makeTest { inherit nodes; testScript = ""; }).driver diff --git a/nixos/modules/misc/ids.nix b/nixos/modules/misc/ids.nix index 5c30e512a1b3b11e85f21a7f82f0a4cbcb4b73cc..aff562c00eb10e2d77dcf3e359ec291609477da7 100644 --- a/nixos/modules/misc/ids.nix +++ b/nixos/modules/misc/ids.nix @@ -331,6 +331,11 @@ zeronet = 304; lirc = 305; lidarr = 306; + slurm = 307; + kapacitor = 308; + solr = 309; + alerta = 310; + minetest = 311; # When adding a uid, make sure it doesn't match an existing gid. And don't use uids above 399! @@ -622,6 +627,11 @@ zeronet = 304; lirc = 305; lidarr = 306; + slurm = 307; + kapacitor = 308; + solr = 309; + alerta = 310; + minetest = 311; # When adding a gid, make sure it doesn't match an existing # uid. Users and groups with the same name should have equal diff --git a/nixos/modules/misc/nixpkgs.nix b/nixos/modules/misc/nixpkgs.nix index 7f9833e184ab9464f39382701bfb0eb38b0c313d..93fbf16841e5fc19c2df31d35126b2cc60fed9cf 100644 --- a/nixos/modules/misc/nixpkgs.nix +++ b/nixos/modules/misc/nixpkgs.nix @@ -1,9 +1,10 @@ -{ config, lib, pkgs, ... }: +{ config, options, lib, pkgs, ... }: with lib; let cfg = config.nixpkgs; + opt = options.nixpkgs; isConfig = x: builtins.isAttrs x || lib.isFunction x; @@ -54,6 +55,12 @@ let check = builtins.isAttrs; }; + defaultPkgs = import ../../../pkgs/top-level/default.nix { + inherit (cfg) config overlays localSystem crossSystem; + }; + + finalPkgs = if opt.pkgs.isDefined then cfg.pkgs.appendOverlays cfg.overlays else defaultPkgs; + in { @@ -61,21 +68,25 @@ in pkgs = mkOption { defaultText = literalExample - ''import "''${nixos}/.." { + ''import "''${nixos}/../pkgs/top-level" { inherit (cfg) config overlays localSystem crossSystem; } ''; - default = import ../../.. { - inherit (cfg) config overlays localSystem crossSystem; - }; type = pkgsType; example = literalExample ''import {}''; description = '' - This is the evaluation of Nixpkgs that will be provided to - all NixOS modules. Defining this option has the effect of - ignoring the other options that would otherwise be used to - evaluate Nixpkgs, because those are arguments to the default - value. The default value imports the Nixpkgs source files + If set, the pkgs argument to all NixOS modules is the value of + this option, extended with nixpkgs.overlays, if + that is also set. Either nixpkgs.crossSystem or + nixpkgs.localSystem will be used in an assertion + to check that the NixOS and Nixpkgs architectures match. Any + other options in nixpkgs.*, notably config, + will be ignored. + + If unset, the pkgs argument to all NixOS modules is determined + as shown in the default value for this option. + + The default value imports the Nixpkgs source files relative to the location of this NixOS module, because NixOS and Nixpkgs are distributed together for consistency, so the nixos in the default value is in fact a @@ -128,12 +139,14 @@ in description = '' List of overlays to use with the Nix Packages collection. (For details, see the Nixpkgs documentation.) It allows - you to override packages globally. This is a function that + you to override packages globally. Each function in the list takes as an argument the original Nixpkgs. The first argument should be used for finding dependencies, and the second should be used for overriding recipes. - Ignored when nixpkgs.pkgs is set. + If nixpkgs.pkgs is set, overlays specified here + will be applied after the overlays that were already present + in nixpkgs.pkgs. ''; }; @@ -207,8 +220,26 @@ in config = { _module.args = { - pkgs = cfg.pkgs; - pkgs_i686 = cfg.pkgs.pkgsi686Linux; + pkgs = finalPkgs; }; + + assertions = [ + ( + let + nixosExpectedSystem = + if config.nixpkgs.crossSystem != null + then config.nixpkgs.crossSystem.system + else config.nixpkgs.localSystem.system; + nixosOption = + if config.nixpkgs.crossSystem != null + then "nixpkgs.crossSystem" + else "nixpkgs.localSystem"; + pkgsSystem = finalPkgs.stdenv.targetPlatform.system; + in { + assertion = nixosExpectedSystem == pkgsSystem; + message = "The NixOS nixpkgs.pkgs option was set to a Nixpkgs invocation that compiles to target system ${pkgsSystem} but NixOS was configured for system ${nixosExpectedSystem} via NixOS option ${nixosOption}. The NixOS system settings must match the Nixpkgs target system."; + } + ) + ]; }; } diff --git a/nixos/modules/module-list.nix b/nixos/modules/module-list.nix index 660644eade8dd6ca5877478066afac63cd0ab28a..5e50a105e1b299ca53c238dd163b72e578ca430a 100644 --- a/nixos/modules/module-list.nix +++ b/nixos/modules/module-list.nix @@ -11,6 +11,7 @@ ./config/xdg/icons.nix ./config/xdg/menus.nix ./config/xdg/mime.nix + ./config/gtk/gtk-icon-cache.nix ./config/gnu.nix ./config/i18n.nix ./config/iproute2.nix @@ -34,7 +35,7 @@ ./config/zram.nix ./hardware/all-firmware.nix ./hardware/brightnessctl.nix - ./hardware/ckb.nix + ./hardware/ckb-next.nix ./hardware/cpu/amd-microcode.nix ./hardware/cpu/intel-microcode.nix ./hardware/digitalbitbox.nix @@ -90,6 +91,7 @@ ./programs/criu.nix ./programs/dconf.nix ./programs/digitalbitbox/default.nix + ./programs/dmrconfig.nix ./programs/environment.nix ./programs/firejail.nix ./programs/fish.nix @@ -419,6 +421,7 @@ ./services/misc/weechat.nix ./services/misc/xmr-stak.nix ./services/misc/zookeeper.nix + ./services/monitoring/alerta.nix ./services/monitoring/apcupsd.nix ./services/monitoring/arbtt.nix ./services/monitoring/bosun.nix @@ -429,10 +432,12 @@ ./services/monitoring/dd-agent/dd-agent.nix ./services/monitoring/fusion-inventory.nix ./services/monitoring/grafana.nix + ./services/monitoring/grafana-reporter.nix ./services/monitoring/graphite.nix ./services/monitoring/hdaps.nix ./services/monitoring/heapster.nix ./services/monitoring/incron.nix + ./services/monitoring/kapacitor.nix ./services/monitoring/longview.nix ./services/monitoring/monit.nix ./services/monitoring/munin.nix diff --git a/nixos/modules/profiles/installation-device.nix b/nixos/modules/profiles/installation-device.nix index 370db2b0845276cec01f111cea83fe27b69a44dc..580ea4a58e5b48c0e61848e8c9f8e68688e8e1fb 100644 --- a/nixos/modules/profiles/installation-device.nix +++ b/nixos/modules/profiles/installation-device.nix @@ -63,7 +63,7 @@ with lib; # Tell the Nix evaluator to garbage collect more aggressively. # This is desirable in memory-constrained environments that don't # (yet) have swap set up. - environment.variables.GC_INITIAL_HEAP_SIZE = "100000"; + environment.variables.GC_INITIAL_HEAP_SIZE = "1M"; # Make the installer more likely to succeed in low memory # environments. The kernel's overcommit heustistics bite us diff --git a/nixos/modules/programs/bash/bash.nix b/nixos/modules/programs/bash/bash.nix index 0fbc77ea44cf997e6dd574f50a8a3b68d77a1ae0..d325fff6a57207647156961aa855345f216e637d 100644 --- a/nixos/modules/programs/bash/bash.nix +++ b/nixos/modules/programs/bash/bash.nix @@ -16,7 +16,7 @@ let # programmable completion. If we do, enable all modules installed in # the system and user profile in obsolete /etc/bash_completion.d/ # directories. Bash loads completions in all - # $XDG_DATA_DIRS/share/bash-completion/completions/ + # $XDG_DATA_DIRS/bash-completion/completions/ # on demand, so they do not need to be sourced here. if shopt -q progcomp &>/dev/null; then . "${pkgs.bash-completion}/etc/profile.d/bash_completion.sh" diff --git a/nixos/modules/programs/dmrconfig.nix b/nixos/modules/programs/dmrconfig.nix new file mode 100644 index 0000000000000000000000000000000000000000..e48a4f318370825f2beb99b179462d7e4b3ae722 --- /dev/null +++ b/nixos/modules/programs/dmrconfig.nix @@ -0,0 +1,38 @@ +{ config, lib, pkgs, ... }: + +with lib; + +let + cfg = config.programs.dmrconfig; + +in { + meta.maintainers = [ maintainers.etu ]; + + ###### interface + options = { + programs.dmrconfig = { + enable = mkOption { + default = false; + type = types.bool; + description = '' + Whether to configure system to enable use of dmrconfig. This + enables the required udev rules and installs the program. + ''; + relatedPackages = [ "dmrconfig" ]; + }; + + package = mkOption { + default = pkgs.dmrconfig; + type = types.package; + defaultText = "pkgs.dmrconfig"; + description = "dmrconfig derivation to use"; + }; + }; + }; + + ###### implementation + config = mkIf cfg.enable { + environment.systemPackages = [ cfg.package ]; + services.udev.packages = [ cfg.package ]; + }; +} diff --git a/nixos/modules/programs/shell.nix b/nixos/modules/programs/shell.nix index 6aa0262e3a4c3d75bc40160f1dd6d1ab81567ab4..9842e2bef643dfc58ec6f4b4ef191fea529bfeae 100644 --- a/nixos/modules/programs/shell.nix +++ b/nixos/modules/programs/shell.nix @@ -13,7 +13,7 @@ with lib; # Set up the per-user profile. mkdir -m 0755 -p "$NIX_USER_PROFILE_DIR" if [ "$(stat --printf '%u' "$NIX_USER_PROFILE_DIR")" != "$(id -u)" ]; then - echo "WARNING: bad ownership on $NIX_USER_PROFILE_DIR, should be $(id -u)" >&2 + echo "WARNING: the per-user profile dir $NIX_USER_PROFILE_DIR should belong to user id $(id -u)" >&2 fi if [ -w "$HOME" ]; then @@ -35,7 +35,7 @@ with lib; NIX_USER_GCROOTS_DIR="/nix/var/nix/gcroots/per-user/$USER" mkdir -m 0755 -p "$NIX_USER_GCROOTS_DIR" if [ "$(stat --printf '%u' "$NIX_USER_GCROOTS_DIR")" != "$(id -u)" ]; then - echo "WARNING: bad ownership on $NIX_USER_GCROOTS_DIR, should be $(id -u)" >&2 + echo "WARNING: the per-user gcroots dir $NIX_USER_GCROOTS_DIR should belong to user id $(id -u)" >&2 fi # Set up a default Nix expression from which to install stuff. diff --git a/nixos/modules/programs/sway-beta.nix b/nixos/modules/programs/sway-beta.nix index 04f2e0662b86081d460be522c82de431c767078b..e651ea4cca33b7ff8ac9db89bf1170f16fa034a2 100644 --- a/nixos/modules/programs/sway-beta.nix +++ b/nixos/modules/programs/sway-beta.nix @@ -5,6 +5,15 @@ with lib; let cfg = config.programs.sway-beta; swayPackage = cfg.package; + + swayWrapped = pkgs.writeShellScriptBin "sway" '' + ${cfg.extraSessionCommands} + exec ${pkgs.dbus.dbus-launch} --exit-with-session ${swayPackage}/bin/sway + ''; + swayJoined = pkgs.symlinkJoin { + name = "sway-joined"; + paths = [ swayWrapped swayPackage ]; + }; in { options.programs.sway-beta = { enable = mkEnableOption '' @@ -20,13 +29,30 @@ in { ''; }; + extraSessionCommands = mkOption { + type = types.lines; + default = ""; + example = '' + export SDL_VIDEODRIVER=wayland + # needs qt5.qtwayland in systemPackages + export QT_QPA_PLATFORM=wayland + export QT_WAYLAND_DISABLE_WINDOWDECORATION="1" + # Fix for some Java AWT applications (e.g. Android Studio), + # use this if they aren't displayed properly: + export _JAVA_AWT_WM_NONREPARENTING=1 + ''; + description = '' + Shell commands executed just before Sway is started. + ''; + }; + extraPackages = mkOption { type = with types; listOf package; default = with pkgs; [ - xwayland dmenu + xwayland rxvt_unicode dmenu ]; defaultText = literalExample '' - with pkgs; [ xwayland dmenu ]; + with pkgs; [ xwayland rxvt_unicode dmenu ]; ''; example = literalExample '' with pkgs; [ @@ -42,7 +68,7 @@ in { }; config = mkIf cfg.enable { - environment.systemPackages = [ swayPackage ] ++ cfg.extraPackages; + environment.systemPackages = [ swayJoined ] ++ cfg.extraPackages; security.pam.services.swaylock = {}; hardware.opengl.enable = mkDefault true; fonts.enableDefaultFonts = mkDefault true; @@ -51,4 +77,3 @@ in { meta.maintainers = with lib.maintainers; [ gnidorah primeos colemickens ]; } - diff --git a/nixos/modules/rename.nix b/nixos/modules/rename.nix index eb74b9bcac125810c51ae87ca20134d8424aedf3..dc0a175d5bb8eb647550509a201e5e7fcdf4a3b1 100644 --- a/nixos/modules/rename.nix +++ b/nixos/modules/rename.nix @@ -28,7 +28,10 @@ with lib; (config: let enabled = getAttrFromPath [ "services" "printing" "gutenprint" ] config; in if enabled then [ pkgs.gutenprint ] else [ ])) - (mkRenamedOptionModule [ "services" "ddclient" "domain" ] [ "services" "ddclient" "domains" ]) + (mkChangedOptionModule [ "services" "ddclient" "domain" ] [ "services" "ddclient" "domains" ] + (config: + let value = getAttrFromPath [ "services" "ddclient" "domain" ] config; + in if value != "" then [ value ] else [])) (mkRemovedOptionModule [ "services" "ddclient" "homeDir" ] "") (mkRenamedOptionModule [ "services" "elasticsearch" "host" ] [ "services" "elasticsearch" "listenAddress" ]) (mkRenamedOptionModule [ "services" "graphite" "api" "host" ] [ "services" "graphite" "api" "listenAddress" ]) @@ -279,6 +282,10 @@ with lib; (mkRenamedOptionModule [ "programs" "man" "enable" ] [ "documentation" "man" "enable" ]) (mkRenamedOptionModule [ "services" "nixosManual" "enable" ] [ "documentation" "nixos" "enable" ]) + # ckb + (mkRenamedOptionModule [ "hardware" "ckb" "enable" ] [ "hardware" "ckb-next" "enable" ]) + (mkRenamedOptionModule [ "hardware" "ckb" "package" ] [ "hardware" "ckb-next" "package" ]) + ] ++ (flip map [ "blackboxExporter" "collectdExporter" "fritzboxExporter" "jsonExporter" "minioExporter" "nginxExporter" "nodeExporter" "snmpExporter" "unifiExporter" "varnishExporter" ] diff --git a/nixos/modules/security/apparmor-suid.nix b/nixos/modules/security/apparmor-suid.nix index dfbf5d859ba9efa5df8936688b8303b21ac7ce72..498c2f25d1c0d992586cf7b9375941995acf70af 100644 --- a/nixos/modules/security/apparmor-suid.nix +++ b/nixos/modules/security/apparmor-suid.nix @@ -28,7 +28,7 @@ with lib; capability setuid, network inet raw, - ${pkgs.glibc.out}/lib/*.so mr, + ${pkgs.stdenv.cc.libc.out}/lib/*.so mr, ${pkgs.libcap.lib}/lib/libcap.so* mr, ${pkgs.attr.out}/lib/libattr.so* mr, diff --git a/nixos/modules/security/dhparams.nix b/nixos/modules/security/dhparams.nix index e2b84c3e3b38018b95aa1ea7e8e1911e31f56226..62a499ea624de92d304927c47dcef1455e35836e 100644 --- a/nixos/modules/security/dhparams.nix +++ b/nixos/modules/security/dhparams.nix @@ -170,4 +170,6 @@ in { ''; }) cfg.params; }; + + meta.maintainers = with lib.maintainers; [ ekleog ]; } diff --git a/nixos/modules/security/rngd.nix b/nixos/modules/security/rngd.nix index 63e00b5481208325042f7bc5288dd5a5f8d03bac..a54ef2e6fcad1bd8310cf3ee6ce585aae7630517 100644 --- a/nixos/modules/security/rngd.nix +++ b/nixos/modules/security/rngd.nix @@ -29,7 +29,7 @@ with lib; description = "Hardware RNG Entropy Gatherer Daemon"; - serviceConfig.ExecStart = "${pkgs.rng-tools}/sbin/rngd -f -v"; + serviceConfig.ExecStart = "${pkgs.rng-tools}/sbin/rngd -f"; }; }; } diff --git a/nixos/modules/services/admin/salt/master.nix b/nixos/modules/services/admin/salt/master.nix index 165580b978374c4c0d5dc35cf5eff8deae365800..c6b1b0cc0bd8e3c33e15e42674704120131cd3b4 100644 --- a/nixos/modules/services/admin/salt/master.nix +++ b/nixos/modules/services/admin/salt/master.nix @@ -53,6 +53,9 @@ in Type = "notify"; NotifyAccess = "all"; }; + restartTriggers = [ + config.environment.etc."salt/master".source + ]; }; }; diff --git a/nixos/modules/services/admin/salt/minion.nix b/nixos/modules/services/admin/salt/minion.nix index 9ecefb32cfa8fa5713aea0a62ab0951d3b756633..c8fa9461a209472829fc8588495e0d18c653a0e4 100644 --- a/nixos/modules/services/admin/salt/minion.nix +++ b/nixos/modules/services/admin/salt/minion.nix @@ -15,7 +15,6 @@ let # Default is in /etc/salt/pki/minion pki_dir = "/var/lib/salt/pki/minion"; } cfg.configuration; - configDir = pkgs.writeTextDir "minion" (builtins.toJSON fullConfig); in @@ -28,15 +27,24 @@ in default = {}; description = '' Salt minion configuration as Nix attribute set. - See - for details. + See + for details. ''; }; }; }; config = mkIf cfg.enable { - environment.systemPackages = with pkgs; [ salt ]; + environment = { + # Set this up in /etc/salt/minion so `salt-call`, etc. work. + # The alternatives are + # - passing --config-dir to all salt commands, not just the minion unit, + # - setting aglobal environment variable. + etc."salt/minion".source = pkgs.writeText "minion" ( + builtins.toJSON fullConfig + ); + systemPackages = with pkgs; [ salt ]; + }; systemd.services.salt-minion = { description = "Salt Minion"; wantedBy = [ "multi-user.target" ]; @@ -45,11 +53,14 @@ in utillinux ]; serviceConfig = { - ExecStart = "${pkgs.salt}/bin/salt-minion --config-dir=${configDir}"; + ExecStart = "${pkgs.salt}/bin/salt-minion"; LimitNOFILE = 8192; Type = "notify"; NotifyAccess = "all"; }; + restartTriggers = [ + config.environment.etc."salt/minion".source + ]; }; }; } diff --git a/nixos/modules/services/amqp/rabbitmq.nix b/nixos/modules/services/amqp/rabbitmq.nix index c6878dd67dbf4ef2a299b0cea3ba2da218056907..7373be2a9b0bba0cfab240e662e99062ec14a368 100644 --- a/nixos/modules/services/amqp/rabbitmq.nix +++ b/nixos/modules/services/amqp/rabbitmq.nix @@ -87,9 +87,19 @@ in { } ''; description = '' - New style config options. - - See http://www.rabbitmq.com/configure.html + Configuration options in RabbitMQ's new config file format, + which is a simple key-value format that can not express nested + data structures. This is known as the rabbitmq.conf file, + although outside NixOS that filename may have Erlang syntax, particularly + prior to RabbitMQ 3.7.0. + + If you do need to express nested data structures, you can use + config option. Configuration from config + will be merged into these options by RabbitMQ at runtime to + form the final configuration. + + See http://www.rabbitmq.com/configure.html#config-items + For the distinct formats, see http://www.rabbitmq.com/configure.html#config-file-formats ''; }; @@ -97,10 +107,17 @@ in { default = ""; type = types.str; description = '' - Verbatim advanced configuration file contents. - Prefered way is to use configItems. + Verbatim advanced configuration file contents using the Erlang syntax. + This is also known as the advanced.config file or the old config format. + + configItems is preferred whenever possible. However, nested + data structures can only be expressed properly using the config option. + + The contents of this option will be merged into the configItems + by RabbitMQ at runtime to form the final configuration. - See http://www.rabbitmq.com/configure.html + See the second table on http://www.rabbitmq.com/configure.html#config-items + For the distinct formats, see http://www.rabbitmq.com/configure.html#config-file-formats ''; }; diff --git a/nixos/modules/services/backup/bacula.nix b/nixos/modules/services/backup/bacula.nix index a0565ca26204b6c1be1c1f69dacd8517be83821f..24cad612826069b23ca0b843144b7409e7f777dc 100644 --- a/nixos/modules/services/backup/bacula.nix +++ b/nixos/modules/services/backup/bacula.nix @@ -346,8 +346,12 @@ in { description = "Bacula File Daemon"; wantedBy = [ "multi-user.target" ]; path = [ pkgs.bacula ]; - serviceConfig.ExecStart = "${pkgs.bacula}/sbin/bacula-fd -f -u root -g bacula -c ${fd_conf}"; - serviceConfig.ExecReload = "${pkgs.coreutils}/bin/kill -HUP $MAINPID"; + serviceConfig = { + ExecStart = "${pkgs.bacula}/sbin/bacula-fd -f -u root -g bacula -c ${fd_conf}"; + ExecReload = "${pkgs.coreutils}/bin/kill -HUP $MAINPID"; + LogsDirectory = "bacula"; + StateDirectory = "bacula"; + }; }; systemd.services.bacula-sd = mkIf sd_cfg.enable { @@ -355,8 +359,12 @@ in { description = "Bacula Storage Daemon"; wantedBy = [ "multi-user.target" ]; path = [ pkgs.bacula ]; - serviceConfig.ExecStart = "${pkgs.bacula}/sbin/bacula-sd -f -u bacula -g bacula -c ${sd_conf}"; - serviceConfig.ExecReload = "${pkgs.coreutils}/bin/kill -HUP $MAINPID"; + serviceConfig = { + ExecStart = "${pkgs.bacula}/sbin/bacula-sd -f -u bacula -g bacula -c ${sd_conf}"; + ExecReload = "${pkgs.coreutils}/bin/kill -HUP $MAINPID"; + LogsDirectory = "bacula"; + StateDirectory = "bacula"; + }; }; services.postgresql.enable = dir_cfg.enable == true; @@ -366,8 +374,12 @@ in { description = "Bacula Director Daemon"; wantedBy = [ "multi-user.target" ]; path = [ pkgs.bacula ]; - serviceConfig.ExecStart = "${pkgs.bacula}/sbin/bacula-dir -f -u bacula -g bacula -c ${dir_conf}"; - serviceConfig.ExecReload = "${pkgs.coreutils}/bin/kill -HUP $MAINPID"; + serviceConfig = { + ExecStart = "${pkgs.bacula}/sbin/bacula-dir -f -u bacula -g bacula -c ${dir_conf}"; + ExecReload = "${pkgs.coreutils}/bin/kill -HUP $MAINPID"; + LogsDirectory = "bacula"; + StateDirectory = "bacula"; + }; preStart = '' if ! test -e "${libDir}/db-created"; then ${pkgs.postgresql}/bin/createuser --no-superuser --no-createdb --no-createrole bacula diff --git a/nixos/modules/services/backup/postgresql-backup.nix b/nixos/modules/services/backup/postgresql-backup.nix index 2ec78ce6f2cfa2e2ab43d81bc87289a5a35c276b..f9f9568faa5c4fc2c8ed8372eeeb18a0540239bb 100644 --- a/nixos/modules/services/backup/postgresql-backup.nix +++ b/nixos/modules/services/backup/postgresql-backup.nix @@ -20,6 +20,8 @@ let ''; script = '' + umask 0077 # ensure backup is only readable by postgres user + if [ -e ${cfg.location}/${db}.sql.gz ]; then ${pkgs.coreutils}/bin/mv ${cfg.location}/${db}.sql.gz ${cfg.location}/${db}.prev.sql.gz fi diff --git a/nixos/modules/services/cluster/kubernetes/dns.nix b/nixos/modules/services/cluster/kubernetes/dns.nix index 43bbb50a48d4de8b01a25f775634b0940f479592..5a3e281ea6948c8b35d8d196bf7ffd6c2e073a5a 100644 --- a/nixos/modules/services/cluster/kubernetes/dns.nix +++ b/nixos/modules/services/cluster/kubernetes/dns.nix @@ -3,8 +3,13 @@ with lib; let - version = "1.14.10"; + version = "1.2.5"; cfg = config.services.kubernetes.addons.dns; + ports = { + dns = 10053; + health = 10054; + metrics = 10055; + }; in { options.services.kubernetes.addons.dns = { enable = mkEnableOption "kubernetes dns addon"; @@ -27,49 +32,130 @@ in { type = types.str; }; - kube-dns = mkOption { - description = "Docker image to seed for the kube-dns main container."; - type = types.attrs; - default = { - imageName = "k8s.gcr.io/k8s-dns-kube-dns-amd64"; - imageDigest = "sha256:b99fc3eee2a9f052f7eb4cc00f15eb12fc405fa41019baa2d6b79847ae7284a8"; - finalImageTag = version; - sha256 = "0x583znk9smqn0fix7ld8sm5jgaxhqhx3fq97b1wkqm7iwhvl3pj"; - }; - }; - - dnsmasq-nanny = mkOption { - description = "Docker image to seed for the kube-dns dnsmasq container."; - type = types.attrs; - default = { - imageName = "k8s.gcr.io/k8s-dns-dnsmasq-nanny-amd64"; - imageDigest = "sha256:bbb2a290a568125b3b996028958eb773f33b5b87a6b37bf38a28f8b62dddb3c8"; - finalImageTag = version; - sha256 = "1fihml7s2mfwgac51cbqpylkwbivc8nyhgi4vb820s83zvl8a6y1"; - }; + replicas = mkOption { + description = "Number of DNS pod replicas to deploy in the cluster."; + default = 2; + type = types.int; }; - sidecar = mkOption { - description = "Docker image to seed for the kube-dns sidecar container."; + coredns = mkOption { + description = "Docker image to seed for the CoreDNS container."; type = types.attrs; default = { - imageName = "k8s.gcr.io/k8s-dns-sidecar-amd64"; - imageDigest = "sha256:4f1ab957f87b94a5ec1edc26fae50da2175461f00afecf68940c4aa079bd08a4"; + imageName = "coredns/coredns"; + imageDigest = "sha256:33c8da20b887ae12433ec5c40bfddefbbfa233d5ce11fb067122e68af30291d6"; finalImageTag = version; - sha256 = "08l1bv5jgrhvjzpqpbinrkgvv52snc4fzyd8ya9v18ns2klyz7m0"; + sha256 = "13q19rgwapv27xcs664dw502254yw4zw63insf6g2danidv2mg6i"; }; }; }; config = mkIf cfg.enable { - services.kubernetes.kubelet.seedDockerImages = with pkgs.dockerTools; [ - (pullImage cfg.kube-dns) - (pullImage cfg.dnsmasq-nanny) - (pullImage cfg.sidecar) - ]; + services.kubernetes.kubelet.seedDockerImages = + singleton (pkgs.dockerTools.pullImage cfg.coredns); services.kubernetes.addonManager.addons = { - kubedns-deployment = { + coredns-sa = { + apiVersion = "v1"; + kind = "ServiceAccount"; + metadata = { + labels = { + "addonmanager.kubernetes.io/mode" = "Reconcile"; + "k8s-app" = "kube-dns"; + "kubernetes.io/cluster-service" = "true"; + }; + name = "coredns"; + namespace = "kube-system"; + }; + }; + + coredns-cr = { + apiVersion = "rbac.authorization.k8s.io/v1beta1"; + kind = "ClusterRole"; + metadata = { + labels = { + "addonmanager.kubernetes.io/mode" = "Reconcile"; + "k8s-app" = "kube-dns"; + "kubernetes.io/cluster-service" = "true"; + "kubernetes.io/bootstrapping" = "rbac-defaults"; + }; + name = "system:coredns"; + }; + rules = [ + { + apiGroups = [ "" ]; + resources = [ "endpoints" "services" "pods" "namespaces" ]; + verbs = [ "list" "watch" ]; + } + { + apiGroups = [ "" ]; + resources = [ "nodes" ]; + verbs = [ "get" ]; + } + ]; + }; + + coredns-crb = { + apiVersion = "rbac.authorization.k8s.io/v1beta1"; + kind = "ClusterRoleBinding"; + metadata = { + annotations = { + "rbac.authorization.kubernetes.io/autoupdate" = "true"; + }; + labels = { + "addonmanager.kubernetes.io/mode" = "Reconcile"; + "k8s-app" = "kube-dns"; + "kubernetes.io/cluster-service" = "true"; + "kubernetes.io/bootstrapping" = "rbac-defaults"; + }; + name = "system:coredns"; + }; + roleRef = { + apiGroup = "rbac.authorization.k8s.io"; + kind = "ClusterRole"; + name = "system:coredns"; + }; + subjects = [ + { + kind = "ServiceAccount"; + name = "coredns"; + namespace = "kube-system"; + } + ]; + }; + + coredns-cm = { + apiVersion = "v1"; + kind = "ConfigMap"; + metadata = { + labels = { + "addonmanager.kubernetes.io/mode" = "Reconcile"; + "k8s-app" = "kube-dns"; + "kubernetes.io/cluster-service" = "true"; + }; + name = "coredns"; + namespace = "kube-system"; + }; + data = { + Corefile = ".:${toString ports.dns} { + errors + health :${toString ports.health} + kubernetes ${cfg.clusterDomain} in-addr.arpa ip6.arpa { + pods insecure + upstream + fallthrough in-addr.arpa ip6.arpa + } + prometheus :${toString ports.metrics} + proxy . /etc/resolv.conf + cache 30 + loop + reload + loadbalance + }"; + }; + }; + + coredns-deploy = { apiVersion = "extensions/v1beta1"; kind = "Deployment"; metadata = { @@ -77,182 +163,96 @@ in { "addonmanager.kubernetes.io/mode" = "Reconcile"; "k8s-app" = "kube-dns"; "kubernetes.io/cluster-service" = "true"; + "kubernetes.io/name" = "CoreDNS"; }; - name = "kube-dns"; + name = "coredns"; namespace = "kube-system"; }; spec = { - selector.matchLabels."k8s-app" = "kube-dns"; + replicas = cfg.replicas; + selector = { + matchLabels = { k8s-app = "kube-dns"; }; + }; strategy = { - rollingUpdate = { - maxSurge = "10%"; - maxUnavailable = 0; - }; + rollingUpdate = { maxUnavailable = 1; }; + type = "RollingUpdate"; }; template = { metadata = { - annotations."scheduler.alpha.kubernetes.io/critical-pod" = ""; - labels.k8s-app = "kube-dns"; + labels = { + k8s-app = "kube-dns"; + }; }; spec = { - priorityClassName = "system-cluster-critical"; containers = [ { - name = "kubedns"; - image = with cfg.kube-dns; "${imageName}:${finalImageTag}"; - resources = { - limits.memory = "170Mi"; - requests = { - cpu = "100m"; - memory = "70Mi"; - }; - }; + args = [ "-conf" "/etc/coredns/Corefile" ]; + image = with cfg.coredns; "${imageName}:${finalImageTag}"; + imagePullPolicy = "Never"; livenessProbe = { failureThreshold = 5; httpGet = { - path = "/healthcheck/kubedns"; - port = 10054; + path = "/health"; + port = ports.health; scheme = "HTTP"; }; initialDelaySeconds = 60; successThreshold = 1; timeoutSeconds = 5; }; - readinessProbe = { - httpGet = { - path = "/readiness"; - port = 8081; - scheme = "HTTP"; - }; - initialDelaySeconds = 3; - timeoutSeconds = 5; - }; - args = [ - "--domain=${cfg.clusterDomain}" - "--dns-port=10053" - "--config-dir=/kube-dns-config" - "--v=2" - ]; - env = [ - { - name = "PROMETHEUS_PORT"; - value = "10055"; - } - ]; + name = "coredns"; ports = [ { - containerPort = 10053; - name = "dns-local"; + containerPort = ports.dns; + name = "dns"; protocol = "UDP"; } { - containerPort = 10053; - name = "dns-tcp-local"; + containerPort = ports.dns; + name = "dns-tcp"; protocol = "TCP"; } { - containerPort = 10055; + containerPort = ports.metrics; name = "metrics"; protocol = "TCP"; } ]; - volumeMounts = [ - { - mountPath = "/kube-dns-config"; - name = "kube-dns-config"; - } - ]; - } - { - name = "dnsmasq"; - image = with cfg.dnsmasq-nanny; "${imageName}:${finalImageTag}"; - livenessProbe = { - httpGet = { - path = "/healthcheck/dnsmasq"; - port = 10054; - scheme = "HTTP"; - }; - initialDelaySeconds = 60; - timeoutSeconds = 5; - successThreshold = 1; - failureThreshold = 5; - }; - args = [ - "-v=2" - "-logtostderr" - "-configDir=/etc/k8s/dns/dnsmasq-nanny" - "-restartDnsmasq=true" - "--" - "-k" - "--cache-size=1000" - "--log-facility=-" - "--server=/${cfg.clusterDomain}/127.0.0.1#10053" - "--server=/in-addr.arpa/127.0.0.1#10053" - "--server=/ip6.arpa/127.0.0.1#10053" - ]; - ports = [ - { - containerPort = 53; - name = "dns"; - protocol = "UDP"; - } - { - containerPort = 53; - name = "dns-tcp"; - protocol = "TCP"; - } - ]; resources = { + limits = { + memory = "170Mi"; + }; requests = { - cpu = "150m"; - memory = "20Mi"; + cpu = "100m"; + memory = "70Mi"; }; }; - volumeMounts = [ - { - mountPath = "/etc/k8s/dns/dnsmasq-nanny"; - name = "kube-dns-config"; - } - ]; - } - { - name = "sidecar"; - image = with cfg.sidecar; "${imageName}:${finalImageTag}"; - livenessProbe = { - httpGet = { - path = "/metrics"; - port = 10054; - scheme = "HTTP"; + securityContext = { + allowPrivilegeEscalation = false; + capabilities = { + drop = [ "all" ]; }; - initialDelaySeconds = 60; - timeoutSeconds = 5; - successThreshold = 1; - failureThreshold = 5; + readOnlyRootFilesystem = true; }; - args = [ - "--v=2" - "--logtostderr" - "--probe=kubedns,127.0.0.1:10053,kubernetes.default.svc.${cfg.clusterDomain},5,A" - "--probe=dnsmasq,127.0.0.1:53,kubernetes.default.svc.${cfg.clusterDomain},5,A" - ]; - ports = [ + volumeMounts = [ { - containerPort = 10054; - name = "metrics"; - protocol = "TCP"; + mountPath = "/etc/coredns"; + name = "config-volume"; + readOnly = true; } ]; - resources = { - requests = { - cpu = "10m"; - memory = "20Mi"; - }; - }; } ]; dnsPolicy = "Default"; - serviceAccountName = "kube-dns"; + nodeSelector = { + "beta.kubernetes.io/os" = "linux"; + }; + serviceAccountName = "coredns"; tolerations = [ + { + effect = "NoSchedule"; + key = "node-role.kubernetes.io/master"; + } { key = "CriticalAddonsOnly"; operator = "Exists"; @@ -261,10 +261,15 @@ in { volumes = [ { configMap = { - name = "kube-dns"; - optional = true; + items = [ + { + key = "Corefile"; + path = "Corefile"; + } + ]; + name = "coredns"; }; - name = "kube-dns-config"; + name = "config-volume"; } ]; }; @@ -272,51 +277,40 @@ in { }; }; - kubedns-svc = { + coredns-svc = { apiVersion = "v1"; kind = "Service"; metadata = { + annotations = { + "prometheus.io/port" = toString ports.metrics; + "prometheus.io/scrape" = "true"; + }; labels = { "addonmanager.kubernetes.io/mode" = "Reconcile"; "k8s-app" = "kube-dns"; "kubernetes.io/cluster-service" = "true"; - "kubernetes.io/name" = "KubeDNS"; + "kubernetes.io/name" = "CoreDNS"; }; name = "kube-dns"; - namespace = "kube-system"; + namespace = "kube-system"; }; spec = { clusterIP = cfg.clusterIp; ports = [ - {name = "dns"; port = 53; protocol = "UDP";} - {name = "dns-tcp"; port = 53; protocol = "TCP";} + { + name = "dns"; + port = 53; + targetPort = ports.dns; + protocol = "UDP"; + } + { + name = "dns-tcp"; + port = 53; + targetPort = ports.dns; + protocol = "TCP"; + } ]; - selector.k8s-app = "kube-dns"; - }; - }; - - kubedns-sa = { - apiVersion = "v1"; - kind = "ServiceAccount"; - metadata = { - name = "kube-dns"; - namespace = "kube-system"; - labels = { - "kubernetes.io/cluster-service" = "true"; - "addonmanager.kubernetes.io/mode" = "Reconcile"; - }; - }; - }; - - kubedns-cm = { - apiVersion = "v1"; - kind = "ConfigMap"; - metadata = { - name = "kube-dns"; - namespace = "kube-system"; - labels = { - "addonmanager.kubernetes.io/mode" = "EnsureExists"; - }; + selector = { k8s-app = "kube-dns"; }; }; }; }; diff --git a/nixos/modules/services/computing/slurm/slurm.nix b/nixos/modules/services/computing/slurm/slurm.nix index 09174ed39f5e867766466a76243c9387033a5678..cd481212db2d28961d58b41f0de185a5df426b0f 100644 --- a/nixos/modules/services/computing/slurm/slurm.nix +++ b/nixos/modules/services/computing/slurm/slurm.nix @@ -6,13 +6,18 @@ let cfg = config.services.slurm; # configuration file can be generated by http://slurm.schedmd.com/configurator.html + + defaultUser = "slurm"; + configFile = pkgs.writeTextDir "slurm.conf" '' ClusterName=${cfg.clusterName} + StateSaveLocation=${cfg.stateSaveLocation} + SlurmUser=${cfg.user} ${optionalString (cfg.controlMachine != null) ''controlMachine=${cfg.controlMachine}''} ${optionalString (cfg.controlAddr != null) ''controlAddr=${cfg.controlAddr}''} - ${optionalString (cfg.nodeName != null) ''nodeName=${cfg.nodeName}''} - ${optionalString (cfg.partitionName != null) ''partitionName=${cfg.partitionName}''} + ${toString (map (x: "NodeName=${x}\n") cfg.nodeName)} + ${toString (map (x: "PartitionName=${x}\n") cfg.partitionName)} PlugStackConfig=${plugStackConfig} ProctrackType=${cfg.procTrackType} ${cfg.extraConfig} @@ -24,12 +29,19 @@ let ${cfg.extraPlugstackConfig} ''; - cgroupConfig = pkgs.writeTextDir "cgroup.conf" '' ${cfg.extraCgroupConfig} ''; + slurmdbdConf = pkgs.writeTextDir "slurmdbd.conf" + '' + DbdHost=${cfg.dbdserver.dbdHost} + SlurmUser=${cfg.user} + StorageType=accounting_storage/mysql + ${cfg.dbdserver.extraConfig} + ''; + # slurm expects some additional config files to be # in the same directory as slurm.conf etcSlurm = pkgs.symlinkJoin { @@ -43,6 +55,8 @@ in ###### interface + meta.maintainers = [ maintainers.markuskowa ]; + options = { services.slurm = { @@ -60,6 +74,27 @@ in }; }; + dbdserver = { + enable = mkEnableOption "SlurmDBD service"; + + dbdHost = mkOption { + type = types.str; + default = config.networking.hostName; + description = '' + Hostname of the machine where slurmdbd + is running (i.e. name returned by hostname -s). + ''; + }; + + extraConfig = mkOption { + type = types.lines; + default = ""; + description = '' + Extra configuration for slurmdbd.conf + ''; + }; + }; + client = { enable = mkEnableOption "slurm client daemon"; }; @@ -116,9 +151,9 @@ in }; nodeName = mkOption { - type = types.nullOr types.str; - default = null; - example = "linux[1-32] CPUs=1 State=UNKNOWN"; + type = types.listOf types.str; + default = []; + example = literalExample ''[ "linux[1-32] CPUs=1 State=UNKNOWN" ];''; description = '' Name that SLURM uses to refer to a node (or base partition for BlueGene systems). Typically this would be the string that "/bin/hostname -s" @@ -127,9 +162,9 @@ in }; partitionName = mkOption { - type = types.nullOr types.str; - default = null; - example = "debug Nodes=linux[1-32] Default=YES MaxTime=INFINITE State=UP"; + type = types.listOf types.str; + default = []; + example = literalExample ''[ "debug Nodes=linux[1-32] Default=YES MaxTime=INFINITE State=UP" ];''; description = '' Name by which the partition may be referenced. Note that now you have to write the partition's parameters after the name. @@ -150,7 +185,7 @@ in }; procTrackType = mkOption { - type = types.string; + type = types.str; default = "proctrack/linuxproc"; description = '' Plugin to be used for process tracking on a job step basis. @@ -159,6 +194,25 @@ in ''; }; + stateSaveLocation = mkOption { + type = types.str; + default = "/var/spool/slurmctld"; + description = '' + Directory into which the Slurm controller, slurmctld, saves its state. + ''; + }; + + user = mkOption { + type = types.str; + default = defaultUser; + description = '' + Set this option when you want to run the slurmctld daemon + as something else than the default slurm user "slurm". + Note that the UID of this user needs to be the same + on all nodes. + ''; + }; + extraConfig = mkOption { default = ""; type = types.lines; @@ -184,6 +238,8 @@ in used when procTrackType=proctrack/cgroup. ''; }; + + }; }; @@ -220,12 +276,24 @@ in ''; }; - in mkIf (cfg.enableStools || cfg.client.enable || cfg.server.enable) { + in mkIf ( cfg.enableStools || + cfg.client.enable || + cfg.server.enable || + cfg.dbdserver.enable ) { environment.systemPackages = [ wrappedSlurm ]; services.munge.enable = mkDefault true; + # use a static uid as default to ensure it is the same on all nodes + users.users.slurm = mkIf (cfg.user == defaultUser) { + name = defaultUser; + group = "slurm"; + uid = config.ids.uids.slurm; + }; + + users.groups.slurm.gid = config.ids.uids.slurm; + systemd.services.slurmd = mkIf (cfg.client.enable) { path = with pkgs; [ wrappedSlurm coreutils ] ++ lib.optional cfg.enableSrunX11 slurm-spank-x11; @@ -261,6 +329,29 @@ in PIDFile = "/run/slurmctld.pid"; ExecReload = "${pkgs.coreutils}/bin/kill -HUP $MAINPID"; }; + + preStart = '' + mkdir -p ${cfg.stateSaveLocation} + chown -R ${cfg.user}:slurm ${cfg.stateSaveLocation} + ''; + }; + + systemd.services.slurmdbd = mkIf (cfg.dbdserver.enable) { + path = with pkgs; [ wrappedSlurm munge coreutils ]; + + wantedBy = [ "multi-user.target" ]; + after = [ "network.target" "munged.service" "mysql.service" ]; + requires = [ "munged.service" "mysql.service" ]; + + # slurm strips the last component off the path + environment.SLURM_CONF = "${slurmdbdConf}/slurm.conf"; + + serviceConfig = { + Type = "forking"; + ExecStart = "${cfg.package}/bin/slurmdbd"; + PIDFile = "/run/slurmdbd.pid"; + ExecReload = "${pkgs.coreutils}/bin/kill -HUP $MAINPID"; + }; }; }; diff --git a/nixos/modules/services/databases/postgresql.nix b/nixos/modules/services/databases/postgresql.nix index de2a757196a5d42803da4353f92ce31a16cb198f..f592be0e768b1d8b8d3d83cb8289266489bd18df 100644 --- a/nixos/modules/services/databases/postgresql.nix +++ b/nixos/modules/services/databases/postgresql.nix @@ -55,7 +55,7 @@ in package = mkOption { type = types.package; - example = literalExample "pkgs.postgresql96"; + example = literalExample "pkgs.postgresql_9_6"; description = '' PostgreSQL package to use. ''; @@ -118,7 +118,7 @@ in extraPlugins = mkOption { type = types.listOf types.path; default = []; - example = literalExample "[ (pkgs.postgis.override { postgresql = pkgs.postgresql94; }) ]"; + example = literalExample "[ (pkgs.postgis.override { postgresql = pkgs.postgresql_9_4; }) ]"; description = '' When this list contains elements a new store path is created. PostgreSQL and the elements are symlinked into it. Then pg_config, @@ -167,9 +167,9 @@ in # Note: when changing the default, make it conditional on # ‘system.stateVersion’ to maintain compatibility with existing # systems! - mkDefault (if versionAtLeast config.system.stateVersion "17.09" then pkgs.postgresql96 - else if versionAtLeast config.system.stateVersion "16.03" then pkgs.postgresql95 - else pkgs.postgresql94); + mkDefault (if versionAtLeast config.system.stateVersion "17.09" then pkgs.postgresql_9_6 + else if versionAtLeast config.system.stateVersion "16.03" then pkgs.postgresql_9_5 + else pkgs.postgresql_9_4); services.postgresql.dataDir = mkDefault (if versionAtLeast config.system.stateVersion "17.09" then "/var/lib/postgresql/${config.services.postgresql.package.psqlSchema}" @@ -271,5 +271,5 @@ in }; meta.doc = ./postgresql.xml; - + meta.maintainers = with lib.maintainers; [ thoughtpolice ]; } diff --git a/nixos/modules/services/databases/postgresql.xml b/nixos/modules/services/databases/postgresql.xml index f89f0d65316437b6e6193f90128073595638caa3..14f4d4909bc0c038f3114c13116889cb0fcaa415 100644 --- a/nixos/modules/services/databases/postgresql.xml +++ b/nixos/modules/services/databases/postgresql.xml @@ -27,12 +27,12 @@ configuration.nix: = true; - = pkgs.postgresql94; + = pkgs.postgresql_9_4; Note that you are required to specify the desired version of PostgreSQL - (e.g. pkgs.postgresql94). Since upgrading your PostgreSQL - version requires a database dump and reload (see below), NixOS cannot - provide a default value for + (e.g. pkgs.postgresql_9_4). Since upgrading your + PostgreSQL version requires a database dump and reload (see below), NixOS + cannot provide a default value for such as the most recent release of PostgreSQL. diff --git a/nixos/modules/services/development/jupyter/default.nix b/nixos/modules/services/development/jupyter/default.nix index 9fcc0043186547269c5c9f8a8f2c6a40b041815b..f20860af6e12874b6462bc0e2c7a5e71cbcb8e58 100644 --- a/nixos/modules/services/development/jupyter/default.nix +++ b/nixos/modules/services/development/jupyter/default.nix @@ -145,6 +145,7 @@ in { systemd.services.jupyter = { description = "Jupyter development server"; + after = [ "network.target" ]; wantedBy = [ "multi-user.target" ]; # TODO: Patch notebook so we can explicitly pass in a shell diff --git a/nixos/modules/services/games/minetest-server.nix b/nixos/modules/services/games/minetest-server.nix index 2de42f20f6ccdbd6910ce600b685810c91862415..98e69c6dc0ea6537079a2e91f0dc9f90efdb7335 100644 --- a/nixos/modules/services/games/minetest-server.nix +++ b/nixos/modules/services/games/minetest-server.nix @@ -84,7 +84,9 @@ in home = "/var/lib/minetest"; createHome = true; uid = config.ids.uids.minetest; + group = "minetest"; }; + users.groups.minetest.gid = config.ids.gids.minetest; systemd.services.minetest-server = { description = "Minetest Server Service"; @@ -93,6 +95,7 @@ in serviceConfig.Restart = "always"; serviceConfig.User = "minetest"; + serviceConfig.Group = "minetest"; script = '' cd /var/lib/minetest diff --git a/nixos/modules/services/hardware/upower.nix b/nixos/modules/services/hardware/upower.nix index 2198842a45116f2c2ded68804c9de951b95eac6a..1da47349c0771b7bf695ed93b27fe2046ef50bd6 100644 --- a/nixos/modules/services/hardware/upower.nix +++ b/nixos/modules/services/hardware/upower.nix @@ -56,6 +56,32 @@ in { Type = "dbus"; BusName = "org.freedesktop.UPower"; ExecStart = "@${cfg.package}/libexec/upowerd upowerd"; + Restart = "on-failure"; + # Upstream lockdown: + # Filesystem lockdown + ProtectSystem = "strict"; + # Needed by keyboard backlight support + ProtectKernelTunables = false; + ProtectControlGroups = true; + ReadWritePaths = "/var/lib/upower"; + ProtectHome = true; + PrivateTmp = true; + + # Network + # PrivateNetwork=true would block udev's netlink socket + RestrictAddressFamilies = "AF_UNIX AF_NETLINK"; + + # Execute Mappings + MemoryDenyWriteExecute = true; + + # Modules + ProtectKernelModules = true; + + # Real-time + RestrictRealtime = true; + + # Privilege escalation + NoNewPrivileges = true; }; }; diff --git a/nixos/modules/services/mail/clamsmtp.nix b/nixos/modules/services/mail/clamsmtp.nix index 8f4f39aa72889046f41a853f18b33cca61e78b14..fc1267c5d280983eac358916558a4364d16bbf1b 100644 --- a/nixos/modules/services/mail/clamsmtp.nix +++ b/nixos/modules/services/mail/clamsmtp.nix @@ -176,4 +176,6 @@ in } ) cfg.instances); }; + + meta.maintainers = with lib.maintainers; [ ekleog ]; } diff --git a/nixos/modules/services/mail/dkimproxy-out.nix b/nixos/modules/services/mail/dkimproxy-out.nix index 894b88e25c1b2f72534404dbe38e0a266202fadc..f4ac9e47007af9921eb4b37d2d7040ab8d4e6fbb 100644 --- a/nixos/modules/services/mail/dkimproxy-out.nix +++ b/nixos/modules/services/mail/dkimproxy-out.nix @@ -115,4 +115,6 @@ in }; }; }; + + meta.maintainers = with lib.maintainers; [ ekleog ]; } diff --git a/nixos/modules/services/mail/rspamd.nix b/nixos/modules/services/mail/rspamd.nix index ff01a5dee53dc346ee2de729038cfb08c1d3b222..1c37ae41e07dd34c5548942b38c4d80f105a1d0f 100644 --- a/nixos/modules/services/mail/rspamd.nix +++ b/nixos/modules/services/mail/rspamd.nix @@ -6,6 +6,7 @@ let cfg = config.services.rspamd; opts = options.services.rspamd; + postfixCfg = config.services.postfix; bindSocketOpts = {options, config, ... }: { options = { @@ -58,7 +59,7 @@ let }; type = mkOption { type = types.nullOr (types.enum [ - "normal" "controller" "fuzzy_storage" "proxy" "lua" + "normal" "controller" "fuzzy_storage" "rspamd_proxy" "lua" ]); description = "The type of this worker"; }; @@ -99,19 +100,21 @@ let description = "Additional entries to put verbatim into worker section of rspamd config file."; }; }; - config = mkIf (name == "normal" || name == "controller" || name == "fuzzy") { + config = mkIf (name == "normal" || name == "controller" || name == "fuzzy" || name == "rspamd_proxy") { type = mkDefault name; - includes = mkDefault [ "$CONFDIR/worker-${name}.inc" ]; - bindSockets = mkDefault (if name == "normal" - then [{ - socket = "/run/rspamd/rspamd.sock"; - mode = "0660"; - owner = cfg.user; - group = cfg.group; - }] - else if name == "controller" - then [ "localhost:11334" ] - else [] ); + includes = mkDefault [ "$CONFDIR/worker-${if name == "rspamd_proxy" then "proxy" else name}.inc" ]; + bindSockets = + let + unixSocket = name: { + mode = "0660"; + socket = "/run/rspamd/${name}.sock"; + owner = cfg.user; + group = cfg.group; + }; + in mkDefault (if name == "normal" then [(unixSocket "rspamd")] + else if name == "controller" then [ "localhost:11334" ] + else if name == "rspamd_proxy" then [ (unixSocket "proxy") ] + else [] ); }; }; @@ -127,28 +130,83 @@ let options { pidfile = "$RUNDIR/rspamd.pid"; .include "$CONFDIR/options.inc" + .include(try=true; priority=1,duplicate=merge) "$LOCAL_CONFDIR/local.d/options.inc" + .include(try=true; priority=10) "$LOCAL_CONFDIR/override.d/options.inc" } logging { type = "syslog"; .include "$CONFDIR/logging.inc" + .include(try=true; priority=1,duplicate=merge) "$LOCAL_CONFDIR/local.d/logging.inc" + .include(try=true; priority=10) "$LOCAL_CONFDIR/override.d/logging.inc" } - ${concatStringsSep "\n" (mapAttrsToList (name: value: '' - worker ${optionalString (value.name != "normal" && value.name != "controller") "${value.name}"} { + ${concatStringsSep "\n" (mapAttrsToList (name: value: let + includeName = if name == "rspamd_proxy" then "proxy" else name; + tryOverride = if value.extraConfig == "" then "true" else "false"; + in '' + worker "${value.type}" { type = "${value.type}"; ${optionalString (value.enable != null) "enabled = ${if value.enable != false then "yes" else "no"};"} ${mkBindSockets value.enable value.bindSockets} ${optionalString (value.count != null) "count = ${toString value.count};"} ${concatStringsSep "\n " (map (each: ".include \"${each}\"") value.includes)} - ${value.extraConfig} + .include(try=true; priority=1,duplicate=merge) "$LOCAL_CONFDIR/local.d/worker-${includeName}.inc" + .include(try=${tryOverride}; priority=10) "$LOCAL_CONFDIR/override.d/worker-${includeName}.inc" } '') cfg.workers)} - ${cfg.extraConfig} + ${optionalString (cfg.extraConfig != "") '' + .include(priority=10) "$LOCAL_CONFDIR/override.d/extra-config.inc" + ''} ''; + filterFiles = files: filterAttrs (n: v: v.enable) files; + rspamdDir = pkgs.linkFarm "etc-rspamd-dir" ( + (mapAttrsToList (name: file: { name = "local.d/${name}"; path = file.source; }) (filterFiles cfg.locals)) ++ + (mapAttrsToList (name: file: { name = "override.d/${name}"; path = file.source; }) (filterFiles cfg.overrides)) ++ + (optional (cfg.localLuaRules != null) { name = "rspamd.local.lua"; path = cfg.localLuaRules; }) ++ + [ { name = "rspamd.conf"; path = rspamdConfFile; } ] + ); + + configFileModule = prefix: { name, config, ... }: { + options = { + enable = mkOption { + type = types.bool; + default = true; + description = '' + Whether this file ${prefix} should be generated. This + option allows specific ${prefix} files to be disabled. + ''; + }; + + text = mkOption { + default = null; + type = types.nullOr types.lines; + description = "Text of the file."; + }; + + source = mkOption { + type = types.path; + description = "Path of the source file."; + }; + }; + config = { + source = mkIf (config.text != null) ( + let name' = "rspamd-${prefix}-" + baseNameOf name; + in mkDefault (pkgs.writeText name' config.text)); + }; + }; + + configOverrides = + (mapAttrs' (n: v: nameValuePair "worker-${if n == "rspamd_proxy" then "proxy" else n}.inc" { + text = v.extraConfig; + }) + (filterAttrs (n: v: v.extraConfig != "") cfg.workers)) + // (if cfg.extraConfig == "" then {} else { + "extra-config.inc".text = cfg.extraConfig; + }); in { @@ -167,6 +225,41 @@ in description = "Whether to run the rspamd daemon in debug mode."; }; + locals = mkOption { + type = with types; attrsOf (submodule (configFileModule "locals")); + default = {}; + description = '' + Local configuration files, written into /etc/rspamd/local.d/{name}. + ''; + example = literalExample '' + { "redis.conf".source = "/nix/store/.../etc/dir/redis.conf"; + "arc.conf".text = "allow_envfrom_empty = true;"; + } + ''; + }; + + overrides = mkOption { + type = with types; attrsOf (submodule (configFileModule "overrides")); + default = {}; + description = '' + Overridden configuration files, written into /etc/rspamd/override.d/{name}. + ''; + example = literalExample '' + { "redis.conf".source = "/nix/store/.../etc/dir/redis.conf"; + "arc.conf".text = "allow_envfrom_empty = true;"; + } + ''; + }; + + localLuaRules = mkOption { + default = null; + type = types.nullOr types.path; + description = '' + Path of file to link to /etc/rspamd/rspamd.local.lua for local + rules written in Lua + ''; + }; + workers = mkOption { type = with types; attrsOf (submodule workerOpts); description = '' @@ -210,7 +303,7 @@ in description = '' User to use when no root privileges are required. ''; - }; + }; group = mkOption { type = types.string; @@ -218,7 +311,30 @@ in description = '' Group to use when no root privileges are required. ''; - }; + }; + + postfix = { + enable = mkOption { + type = types.bool; + default = false; + description = "Add rspamd milter to postfix main.conf"; + }; + + config = mkOption { + type = with types; attrsOf (either bool (either str (listOf str))); + description = '' + Addon to postfix configuration + ''; + default = { + smtpd_milters = ["unix:/run/rspamd/rspamd-milter.sock"]; + non_smtpd_milters = ["unix:/run/rspamd/rspamd-milter.sock"]; + }; + example = { + smtpd_milters = ["unix:/run/rspamd/rspamd-milter.sock"]; + non_smtpd_milters = ["unix:/run/rspamd/rspamd-milter.sock"]; + }; + }; + }; }; }; @@ -226,6 +342,25 @@ in ###### implementation config = mkIf cfg.enable { + services.rspamd.overrides = configOverrides; + services.rspamd.workers = mkIf cfg.postfix.enable { + controller = {}; + rspamd_proxy = { + bindSockets = [ { + mode = "0660"; + socket = "/run/rspamd/rspamd-milter.sock"; + owner = cfg.user; + group = postfixCfg.group; + } ]; + extraConfig = '' + upstream "local" { + default = yes; # Self-scan upstreams are always default + self_scan = yes; # Enable self-scan + } + ''; + }; + }; + services.postfix.config = mkIf cfg.postfix.enable cfg.postfix.config; # Allow users to run 'rspamc' and 'rspamadm'. environment.systemPackages = [ pkgs.rspamd ]; @@ -242,16 +377,17 @@ in gid = config.ids.gids.rspamd; }; - environment.etc."rspamd.conf".source = rspamdConfFile; + environment.etc."rspamd".source = rspamdDir; systemd.services.rspamd = { description = "Rspamd Service"; wantedBy = [ "multi-user.target" ]; after = [ "network.target" ]; + restartTriggers = [ rspamdDir ]; serviceConfig = { - ExecStart = "${pkgs.rspamd}/bin/rspamd ${optionalString cfg.debug "-d"} --user=${cfg.user} --group=${cfg.group} --pid=/run/rspamd.pid -c ${rspamdConfFile} -f"; + ExecStart = "${pkgs.rspamd}/bin/rspamd ${optionalString cfg.debug "-d"} --user=${cfg.user} --group=${cfg.group} --pid=/run/rspamd.pid -c /etc/rspamd/rspamd.conf -f"; Restart = "always"; RuntimeDirectory = "rspamd"; PrivateTmp = true; diff --git a/nixos/modules/services/misc/gitea.nix b/nixos/modules/services/misc/gitea.nix index a222325579fecf5e0cd3f9b9fe387a532460b59c..7a10bd8729945b63a047c2c6bda1861648e3933f 100644 --- a/nixos/modules/services/misc/gitea.nix +++ b/nixos/modules/services/misc/gitea.nix @@ -6,6 +6,7 @@ let cfg = config.services.gitea; gitea = cfg.package; pg = config.services.postgresql; + useMysql = cfg.database.type == "mysql"; usePostgresql = cfg.database.type == "postgres"; configFile = pkgs.writeText "app.ini" '' APP_NAME = ${cfg.appName} @@ -14,7 +15,7 @@ let [database] DB_TYPE = ${cfg.database.type} - HOST = ${cfg.database.host}:${toString cfg.database.port} + HOST = ${if cfg.database.socket != null then cfg.database.socket else cfg.database.host + ":" + toString cfg.database.port} NAME = ${cfg.database.name} USER = ${cfg.database.user} PASSWD = #dbpass# @@ -148,6 +149,13 @@ in ''; }; + socket = mkOption { + type = types.nullOr types.path; + default = null; + example = "/run/mysqld/mysqld.sock"; + description = "Path to the unix socket file to use for authentication."; + }; + path = mkOption { type = types.str; default = "${cfg.stateDir}/data/gitea.db"; @@ -253,7 +261,7 @@ in systemd.services.gitea = { description = "gitea"; - after = [ "network.target" "postgresql.service" ]; + after = [ "network.target" ] ++ lib.optional usePostgresql "postgresql.service" ++ lib.optional useMysql "mysql.service"; wantedBy = [ "multi-user.target" ]; path = [ gitea.bin ]; diff --git a/nixos/modules/services/misc/gitlab.nix b/nixos/modules/services/misc/gitlab.nix index 8ea831afb7c1acef4cff0b42dc35c6ccb34558ac..aa72cda70453f60d9c1a15c4fb099c429041b284 100644 --- a/nixos/modules/services/misc/gitlab.nix +++ b/nixos/modules/services/misc/gitlab.nix @@ -14,15 +14,16 @@ let pathUrlQuote = url: replaceStrings ["/"] ["%2F"] url; pgSuperUser = config.services.postgresql.superUser; - databaseYml = '' - production: - adapter: postgresql - database: ${cfg.databaseName} - host: ${cfg.databaseHost} - password: ${cfg.databasePassword} - username: ${cfg.databaseUsername} - encoding: utf8 - ''; + databaseConfig = { + production = { + adapter = "postgresql"; + database = cfg.databaseName; + host = cfg.databaseHost; + password = cfg.databasePassword; + username = cfg.databaseUsername; + encoding = "utf8"; + }; + }; gitalyToml = pkgs.writeText "gitaly.toml" '' socket_path = "${lib.escape ["\""] gitalySocket}" @@ -45,35 +46,31 @@ let '') gitlabConfig.production.repositories.storages))} ''; - gitlabShellYml = '' - user: ${cfg.user} - gitlab_url: "http+unix://${pathUrlQuote gitlabSocket}" - http_settings: - self_signed_cert: false - repos_path: "${cfg.statePath}/repositories" - secret_file: "${cfg.statePath}/config/gitlab_shell_secret" - log_file: "${cfg.statePath}/log/gitlab-shell.log" - custom_hooks_dir: "${cfg.statePath}/custom_hooks" - redis: - bin: ${pkgs.redis}/bin/redis-cli - host: 127.0.0.1 - port: 6379 - database: 0 - namespace: resque:gitlab - ''; + gitlabShellConfig = { + user = cfg.user; + gitlab_url = "http+unix://${pathUrlQuote gitlabSocket}"; + http_settings.self_signed_cert = false; + repos_path = "${cfg.statePath}/repositories"; + secret_file = "${cfg.statePath}/config/gitlab_shell_secret"; + log_file = "${cfg.statePath}/log/gitlab-shell.log"; + custom_hooks_dir = "${cfg.statePath}/custom_hooks"; + redis = { + bin = "${pkgs.redis}/bin/redis-cli"; + host = "127.0.0.1"; + port = 6379; + database = 0; + namespace = "resque:gitlab"; + }; + }; - redisYml = '' - production: - url: redis://localhost:6379/ - ''; + redisConfig.production.url = "redis://localhost:6379/"; - secretsYml = '' - production: - secret_key_base: ${cfg.secrets.secret} - otp_key_base: ${cfg.secrets.otp} - db_key_base: ${cfg.secrets.db} - openid_connect_signing_key: ${builtins.toJSON cfg.secrets.jws} - ''; + secretsConfig.production = { + secret_key_base = cfg.secrets.secret; + otp_key_base = cfg.secrets.otp; + db_key_base = cfg.secrets.db; + openid_connect_signing_key = cfg.secrets.jws; + }; gitlabConfig = { # These are the default settings from config/gitlab.example.yml @@ -115,12 +112,8 @@ let upload_pack = true; receive_pack = true; }; - workhorse = { - secret_file = "${cfg.statePath}/.gitlab_workhorse_secret"; - }; - git = { - bin_path = "git"; - }; + workhorse.secret_file = "${cfg.statePath}/.gitlab_workhorse_secret"; + git.bin_path = "git"; monitoring = { ip_whitelist = [ "127.0.0.0/8" "::1/128" ]; sidekiq_exporter = { @@ -138,7 +131,7 @@ let HOME = "${cfg.statePath}/home"; UNICORN_PATH = "${cfg.statePath}/"; GITLAB_PATH = "${cfg.packages.gitlab}/share/gitlab/"; - GITLAB_STATE_PATH = "${cfg.statePath}"; + GITLAB_STATE_PATH = cfg.statePath; GITLAB_UPLOADS_PATH = "${cfg.statePath}/uploads"; SCHEMA = "${cfg.statePath}/db/schema.rb"; GITLAB_LOG_PATH = "${cfg.statePath}/log"; @@ -146,13 +139,11 @@ let GITLAB_SHELL_CONFIG_PATH = "${cfg.statePath}/shell/config.yml"; GITLAB_SHELL_SECRET_PATH = "${cfg.statePath}/config/gitlab_shell_secret"; GITLAB_SHELL_HOOKS_PATH = "${cfg.statePath}/shell/hooks"; - GITLAB_REDIS_CONFIG_FILE = pkgs.writeText "gitlab-redis.yml" redisYml; + GITLAB_REDIS_CONFIG_FILE = pkgs.writeText "redis.yml" (builtins.toJSON redisConfig); prometheus_multiproc_dir = "/run/gitlab"; RAILS_ENV = "production"; }; - unicornConfig = builtins.readFile ./defaultUnicornConfig.rb; - gitlab-rake = pkgs.stdenv.mkDerivation rec { name = "gitlab-rake"; buildInputs = [ pkgs.makeWrapper ]; @@ -162,7 +153,6 @@ let mkdir -p $out/bin makeWrapper ${cfg.packages.gitlab.rubyEnv}/bin/rake $out/bin/gitlab-rake \ ${concatStrings (mapAttrsToList (name: value: "--set ${name} '${value}' ") gitlabEnv)} \ - --set GITLAB_CONFIG_PATH '${cfg.statePath}/config' \ --set PATH '${lib.makeBinPath [ pkgs.nodejs pkgs.gzip pkgs.git pkgs.gnutar config.services.postgresql.package pkgs.coreutils pkgs.procps ]}:$PATH' \ --set RAKEOPT '-f ${cfg.packages.gitlab}/share/gitlab/Rakefile' \ --run 'cd ${cfg.packages.gitlab}/share/gitlab' @@ -306,7 +296,6 @@ in { initialRootPassword = mkOption { type = types.str; - default = "UseNixOS!"; description = '' Initial password of the root account if this is a new install. ''; @@ -461,10 +450,30 @@ in { } ]; + systemd.tmpfiles.rules = [ + "d /run/gitlab 0755 ${cfg.user} ${cfg.group} -" + "d ${gitlabEnv.HOME} 0750 ${cfg.user} ${cfg.group} -" + "d ${cfg.backupPath} 0750 ${cfg.user} ${cfg.group} -" + "d ${cfg.statePath}/builds 0750 ${cfg.user} ${cfg.group} -" + "d ${cfg.statePath}/config 0750 ${cfg.user} ${cfg.group} -" + "d ${cfg.statePath}/db 0750 ${cfg.user} ${cfg.group} -" + "d ${cfg.statePath}/log 0750 ${cfg.user} ${cfg.group} -" + "d ${cfg.statePath}/repositories 2770 ${cfg.user} ${cfg.group} -" + "d ${cfg.statePath}/shell 0750 ${cfg.user} ${cfg.group} -" + "d ${cfg.statePath}/tmp/pids 0750 ${cfg.user} ${cfg.group} -" + "d ${cfg.statePath}/tmp/sockets 0750 ${cfg.user} ${cfg.group} -" + "d ${cfg.statePath}/uploads 0700 ${cfg.user} ${cfg.group} -" + "d ${cfg.statePath}/custom_hooks/pre-receive.d 0700 ${cfg.user} ${cfg.group} -" + "d ${cfg.statePath}/custom_hooks/post-receive.d 0700 ${cfg.user} ${cfg.group} -" + "d ${cfg.statePath}/custom_hooks/update.d 0700 ${cfg.user} ${cfg.group} -" + "d ${gitlabConfig.production.shared.path}/artifacts 0750 ${cfg.user} ${cfg.group} -" + "d ${gitlabConfig.production.shared.path}/lfs-objects 0750 ${cfg.user} ${cfg.group} -" + "d ${gitlabConfig.production.shared.path}/pages 0750 ${cfg.user} ${cfg.group} -" + ]; + systemd.services.gitlab-sidekiq = { - after = [ "network.target" "redis.service" ]; + after = [ "network.target" "redis.service" "gitlab.service" ]; wantedBy = [ "multi-user.target" ]; - partOf = [ "gitlab.service" ]; environment = gitlabEnv; path = with pkgs; [ config.services.postgresql.package @@ -486,10 +495,8 @@ in { }; systemd.services.gitaly = { - after = [ "network.target" "gitlab.service" ]; + after = [ "network.target" ]; wantedBy = [ "multi-user.target" ]; - environment.HOME = gitlabEnv.HOME; - environment.GITLAB_SHELL_CONFIG_PATH = gitlabEnv.GITLAB_SHELL_CONFIG_PATH; path = with pkgs; [ gitAndTools.git cfg.packages.gitaly.rubyEnv cfg.packages.gitaly.rubyEnv.wrappedRuby ]; serviceConfig = { Type = "simple"; @@ -505,8 +512,6 @@ in { systemd.services.gitlab-workhorse = { after = [ "network.target" ]; wantedBy = [ "multi-user.target" ]; - environment.HOME = gitlabEnv.HOME; - environment.GITLAB_SHELL_CONFIG_PATH = gitlabEnv.GITLAB_SHELL_CONFIG_PATH; path = with pkgs; [ gitAndTools.git gnutar @@ -514,10 +519,6 @@ in { openssh gitlab-workhorse ]; - preStart = '' - mkdir -p /run/gitlab - chown ${cfg.user}:${cfg.group} /run/gitlab - ''; serviceConfig = { PermissionsStartOnly = true; # preStart must be run as root Type = "simple"; @@ -538,7 +539,7 @@ in { }; systemd.services.gitlab = { - after = [ "network.target" "postgresql.service" "redis.service" ]; + after = [ "gitlab-workhorse.service" "gitaly.service" "network.target" "postgresql.service" "redis.service" ]; requires = [ "gitlab-sidekiq.service" ]; wantedBy = [ "multi-user.target" ]; environment = gitlabEnv; @@ -551,102 +552,76 @@ in { gnupg ]; preStart = '' - mkdir -p ${cfg.backupPath} - mkdir -p ${cfg.statePath}/builds - mkdir -p ${cfg.statePath}/repositories - mkdir -p ${gitlabConfig.production.shared.path}/artifacts - mkdir -p ${gitlabConfig.production.shared.path}/lfs-objects - mkdir -p ${gitlabConfig.production.shared.path}/pages - mkdir -p ${cfg.statePath}/log - mkdir -p ${cfg.statePath}/tmp/pids - mkdir -p ${cfg.statePath}/tmp/sockets - mkdir -p ${cfg.statePath}/shell - mkdir -p ${cfg.statePath}/db - mkdir -p ${cfg.statePath}/uploads - mkdir -p ${cfg.statePath}/custom_hooks/pre-receive.d - mkdir -p ${cfg.statePath}/custom_hooks/post-receive.d - mkdir -p ${cfg.statePath}/custom_hooks/update.d - - rm -rf ${cfg.statePath}/config ${cfg.statePath}/shell/hooks - mkdir -p ${cfg.statePath}/config - - ${pkgs.openssl}/bin/openssl rand -hex 32 > ${cfg.statePath}/config/gitlab_shell_secret - - mkdir -p /run/gitlab - mkdir -p ${cfg.statePath}/log - [ -d /run/gitlab/log ] || ln -sf ${cfg.statePath}/log /run/gitlab/log - [ -d /run/gitlab/tmp ] || ln -sf ${cfg.statePath}/tmp /run/gitlab/tmp - [ -d /run/gitlab/uploads ] || ln -sf ${cfg.statePath}/uploads /run/gitlab/uploads - ln -sf $GITLAB_SHELL_CONFIG_PATH /run/gitlab/shell-config.yml - chown -R ${cfg.user}:${cfg.group} /run/gitlab - - # Prepare home directory - mkdir -p ${gitlabEnv.HOME}/.ssh - touch ${gitlabEnv.HOME}/.ssh/authorized_keys - chown -R ${cfg.user}:${cfg.group} ${gitlabEnv.HOME}/ - cp -rf ${cfg.packages.gitlab}/share/gitlab/db/* ${cfg.statePath}/db - cp -rf ${cfg.packages.gitlab}/share/gitlab/config.dist/* ${cfg.statePath}/config - ${optionalString cfg.smtp.enable '' - ln -sf ${smtpSettings} ${cfg.statePath}/config/initializers/smtp_settings.rb - ''} - ln -sf ${cfg.statePath}/config /run/gitlab/config + rm -rf ${cfg.statePath}/config + mkdir ${cfg.statePath}/config if [ -e ${cfg.statePath}/lib ]; then rm ${cfg.statePath}/lib fi - ln -sf ${pkgs.gitlab}/share/gitlab/lib ${cfg.statePath}/lib + + ln -sf ${cfg.packages.gitlab}/share/gitlab/lib ${cfg.statePath}/lib + [ -L /run/gitlab/config ] || ln -sf ${cfg.statePath}/config /run/gitlab/config + [ -L /run/gitlab/log ] || ln -sf ${cfg.statePath}/log /run/gitlab/log + [ -L /run/gitlab/tmp ] || ln -sf ${cfg.statePath}/tmp /run/gitlab/tmp + [ -L /run/gitlab/uploads ] || ln -sf ${cfg.statePath}/uploads /run/gitlab/uploads + ${optionalString cfg.smtp.enable '' + ln -sf ${smtpSettings} ${cfg.statePath}/config/initializers/smtp_settings.rb + ''} cp ${cfg.packages.gitlab}/share/gitlab/VERSION ${cfg.statePath}/VERSION + cp -rf ${cfg.packages.gitlab}/share/gitlab/config.dist/* ${cfg.statePath}/config + ${pkgs.openssl}/bin/openssl rand -hex 32 > ${cfg.statePath}/config/gitlab_shell_secret # JSON is a subset of YAML - ln -fs ${pkgs.writeText "gitlab.yml" (builtins.toJSON gitlabConfig)} ${cfg.statePath}/config/gitlab.yml - ln -fs ${pkgs.writeText "database.yml" databaseYml} ${cfg.statePath}/config/database.yml - ln -fs ${pkgs.writeText "secrets.yml" secretsYml} ${cfg.statePath}/config/secrets.yml - ln -fs ${pkgs.writeText "unicorn.rb" unicornConfig} ${cfg.statePath}/config/unicorn.rb - - chown -R ${cfg.user}:${cfg.group} ${cfg.statePath}/ - chmod -R ug+rwX,o-rwx+X ${cfg.statePath}/ + ln -sf ${pkgs.writeText "gitlab.yml" (builtins.toJSON gitlabConfig)} ${cfg.statePath}/config/gitlab.yml + ln -sf ${pkgs.writeText "database.yml" (builtins.toJSON databaseConfig)} ${cfg.statePath}/config/database.yml + ln -sf ${pkgs.writeText "secrets.yml" (builtins.toJSON secretsConfig)} ${cfg.statePath}/config/secrets.yml + ln -sf ${./defaultUnicornConfig.rb} ${cfg.statePath}/config/unicorn.rb # Install the shell required to push repositories - ln -fs ${pkgs.writeText "config.yml" gitlabShellYml} "$GITLAB_SHELL_CONFIG_PATH" - ln -fs ${cfg.packages.gitlab-shell}/hooks "$GITLAB_SHELL_HOOKS_PATH" + ln -sf ${pkgs.writeText "config.yml" (builtins.toJSON gitlabShellConfig)} /run/gitlab/shell-config.yml + [ -L ${cfg.statePath}/shell/hooks ] || ln -sf ${cfg.packages.gitlab-shell}/hooks ${cfg.statePath}/shell/hooks ${cfg.packages.gitlab-shell}/bin/install - if [ "${cfg.databaseHost}" = "127.0.0.1" ]; then - if ! test -e "${cfg.statePath}/db-created"; then + chown -R ${cfg.user}:${cfg.group} ${cfg.statePath}/ + chmod -R ug+rwX,o-rwx+X ${cfg.statePath}/ + chown -R ${cfg.user}:${cfg.group} /run/gitlab + + if ! test -e "${cfg.statePath}/db-created"; then + if [ "${cfg.databaseHost}" = "127.0.0.1" ]; then ${pkgs.sudo}/bin/sudo -u ${pgSuperUser} psql postgres -c "CREATE ROLE ${cfg.databaseUsername} WITH LOGIN NOCREATEDB NOCREATEROLE ENCRYPTED PASSWORD '${cfg.databasePassword}'" ${pkgs.sudo}/bin/sudo -u ${pgSuperUser} ${config.services.postgresql.package}/bin/createdb --owner ${cfg.databaseUsername} ${cfg.databaseName} - touch "${cfg.statePath}/db-created" + + # enable required pg_trgm extension for gitlab + ${pkgs.sudo}/bin/sudo -u ${pgSuperUser} psql ${cfg.databaseName} -c "CREATE EXTENSION IF NOT EXISTS pg_trgm" fi - # enable required pg_trgm extension for gitlab - ${pkgs.sudo}/bin/sudo -u ${pgSuperUser} psql ${cfg.databaseName} -c "CREATE EXTENSION IF NOT EXISTS pg_trgm" + ${pkgs.sudo}/bin/sudo -u ${cfg.user} -H ${gitlab-rake}/bin/gitlab-rake db:schema:load + + touch "${cfg.statePath}/db-created" fi # Always do the db migrations just to be sure the database is up-to-date - ${gitlab-rake}/bin/gitlab-rake db:migrate RAILS_ENV=production + ${pkgs.sudo}/bin/sudo -u ${cfg.user} -H ${gitlab-rake}/bin/gitlab-rake db:migrate - # The gitlab:setup task is horribly broken somehow, the db:migrate - # task above and the db:seed_fu below will do the same for setting - # up the initial database if ! test -e "${cfg.statePath}/db-seeded"; then - ${gitlab-rake}/bin/gitlab-rake db:seed_fu RAILS_ENV=production \ + ${pkgs.sudo}/bin/sudo -u ${cfg.user} ${gitlab-rake}/bin/gitlab-rake db:seed_fu \ GITLAB_ROOT_PASSWORD='${cfg.initialRootPassword}' GITLAB_ROOT_EMAIL='${cfg.initialRootEmail}' touch "${cfg.statePath}/db-seeded" fi # The gitlab:shell:setup regenerates the authorized_keys file so that # the store path to the gitlab-shell in it gets updated - ${pkgs.sudo}/bin/sudo -u ${cfg.user} force=yes ${gitlab-rake}/bin/gitlab-rake gitlab:shell:setup RAILS_ENV=production + ${pkgs.sudo}/bin/sudo -u ${cfg.user} -H force=yes ${gitlab-rake}/bin/gitlab-rake gitlab:shell:setup # The gitlab:shell:create_hooks task seems broken for fixing links # so we instead delete all the hooks and create them anew rm -f ${cfg.statePath}/repositories/**/*.git/hooks - ${gitlab-rake}/bin/gitlab-rake gitlab:shell:create_hooks RAILS_ENV=production + ${pkgs.sudo}/bin/sudo -u ${cfg.user} -H ${gitlab-rake}/bin/gitlab-rake gitlab:shell:create_hooks + + ${pkgs.sudo}/bin/sudo -u ${cfg.user} -H ${pkgs.git}/bin/git config --global core.autocrlf "input" # Change permissions in the last step because some of the # intermediary scripts like to create directories as root. - chown -R ${cfg.user}:${cfg.group} ${cfg.statePath} - chmod -R ug+rwX,o-rwx+X ${cfg.statePath} chmod -R u+rwX,go-rwx+X ${gitlabEnv.HOME} chmod -R ug+rwX,o-rwx ${cfg.statePath}/repositories chmod -R ug-s ${cfg.statePath}/repositories diff --git a/nixos/modules/services/misc/home-assistant.nix b/nixos/modules/services/misc/home-assistant.nix index 0756e81612ac01babacbe49edae2af59878c4265..2e9aa33aeeee122fdeb81fd15f1cc9a5a2c29d16 100644 --- a/nixos/modules/services/misc/home-assistant.nix +++ b/nixos/modules/services/misc/home-assistant.nix @@ -157,6 +157,7 @@ in { Restart = "on-failure"; ProtectSystem = "strict"; ReadWritePaths = "${cfg.configDir}"; + KillSignal = "SIGINT"; PrivateTmp = true; RemoveIPC = true; }; diff --git a/nixos/modules/services/misc/nix-daemon.nix b/nixos/modules/services/misc/nix-daemon.nix index 5e171c08d89309a4b232205cd12f463dce37a595..973575570612ccf48a02b82b807b61876cc4a7b9 100644 --- a/nixos/modules/services/misc/nix-daemon.nix +++ b/nixos/modules/services/misc/nix-daemon.nix @@ -62,11 +62,15 @@ let ''} $extraOptions END - '' + optionalString cfg.checkConfig '' - echo "Checking that Nix can read nix.conf..." - ln -s $out ./nix.conf - NIX_CONF_DIR=$PWD ${cfg.package}/bin/nix show-config >/dev/null - ''); + '' + optionalString cfg.checkConfig ( + if pkgs.stdenv.hostPlatform != pkgs.stdenv.buildPlatform then '' + echo "Ignore nix.checkConfig when cross-compiling" + '' else '' + echo "Checking that Nix can read nix.conf..." + ln -s $out ./nix.conf + NIX_CONF_DIR=$PWD ${cfg.package}/bin/nix show-config >/dev/null + '') + ); in diff --git a/nixos/modules/services/misc/packagekit.nix b/nixos/modules/services/misc/packagekit.nix index 2d1ff7bb411708556af194e614d78c052d496b60..bce21e8acff312103a473580b872f11687b2dea2 100644 --- a/nixos/modules/services/misc/packagekit.nix +++ b/nixos/modules/services/misc/packagekit.nix @@ -6,11 +6,8 @@ let cfg = config.services.packagekit; - backend = "nix"; - packagekitConf = '' [Daemon] -DefaultBackend=${backend} KeepCache=false ''; diff --git a/nixos/modules/services/monitoring/alerta.nix b/nixos/modules/services/monitoring/alerta.nix new file mode 100644 index 0000000000000000000000000000000000000000..8f4258e26dedc952c2ea0d53c306bfd5903ea066 --- /dev/null +++ b/nixos/modules/services/monitoring/alerta.nix @@ -0,0 +1,116 @@ +{ options, config, lib, pkgs, ... }: + +with lib; + +let + cfg = config.services.alerta; + + alertaConf = pkgs.writeTextFile { + name = "alertad.conf"; + text = '' + DATABASE_URL = '${cfg.databaseUrl}' + DATABASE_NAME = '${cfg.databaseName}' + LOG_FILE = '${cfg.logDir}/alertad.log' + LOG_FORMAT = '%(asctime)s - %(name)s - %(levelname)s - %(message)s' + CORS_ORIGINS = [ ${concatMapStringsSep ", " (s: "\"" + s + "\"") cfg.corsOrigins} ]; + AUTH_REQUIRED = ${if cfg.authenticationRequired then "True" else "False"} + SIGNUP_ENABLED = ${if cfg.signupEnabled then "True" else "False"} + ${cfg.extraConfig} + ''; + }; +in +{ + options.services.alerta = { + enable = mkEnableOption "alerta"; + + port = mkOption { + type = types.int; + default = 5000; + description = "Port of Alerta"; + }; + + bind = mkOption { + type = types.str; + default = "0.0.0.0"; + example = literalExample "0.0.0.0"; + description = "Address to bind to. The default is to bind to all addresses"; + }; + + logDir = mkOption { + type = types.path; + description = "Location where the logfiles are stored"; + default = "/var/log/alerta"; + }; + + databaseUrl = mkOption { + type = types.str; + description = "URL of the MongoDB or PostgreSQL database to connect to"; + default = "mongodb://localhost"; + example = "mongodb://localhost"; + }; + + databaseName = mkOption { + type = types.str; + description = "Name of the database instance to connect to"; + default = "monitoring"; + example = "monitoring"; + }; + + corsOrigins = mkOption { + type = types.listOf types.str; + description = "List of URLs that can access the API for Cross-Origin Resource Sharing (CORS)"; + example = [ "http://localhost" "http://localhost:5000" ]; + default = [ "http://localhost" "http://localhost:5000" ]; + }; + + authenticationRequired = mkOption { + type = types.bool; + description = "Whether users must authenticate when using the web UI or command-line tool"; + default = false; + }; + + signupEnabled = mkOption { + type = types.bool; + description = "Whether to prevent sign-up of new users via the web UI"; + default = true; + }; + + extraConfig = mkOption { + description = "These lines go into alertad.conf verbatim."; + default = ""; + type = types.lines; + }; + }; + + config = mkIf cfg.enable { + systemd.services.alerta = { + description = "Alerta Monitoring System"; + wantedBy = [ "multi-user.target" ]; + after = [ "networking.target" ]; + environment = { + ALERTA_SVR_CONF_FILE = alertaConf; + }; + serviceConfig = { + ExecStart = "${pkgs.python36Packages.alerta-server}/bin/alertad run --port ${toString cfg.port} --host ${cfg.bind}"; + User = "alerta"; + Group = "alerta"; + PermissionsStartOnly = true; + }; + preStart = '' + mkdir -p ${cfg.logDir} + chown alerta:alerta ${cfg.logDir} + ''; + }; + + environment.systemPackages = [ pkgs.python36Packages.alerta ]; + + users.users.alerta = { + uid = config.ids.uids.alerta; + description = "Alerta user"; + }; + + users.groups.alerta = { + gid = config.ids.gids.alerta; + }; + }; +} diff --git a/nixos/modules/services/monitoring/grafana-reporter.nix b/nixos/modules/services/monitoring/grafana-reporter.nix new file mode 100644 index 0000000000000000000000000000000000000000..149026d20188f4305568471a42f7e37178781cae --- /dev/null +++ b/nixos/modules/services/monitoring/grafana-reporter.nix @@ -0,0 +1,66 @@ +{ options, config, lib, pkgs, ... }: + +with lib; + +let + cfg = config.services.grafana_reporter; + +in { + options.services.grafana_reporter = { + enable = mkEnableOption "grafana_reporter"; + + grafana = { + protocol = mkOption { + description = "Grafana protocol."; + default = "http"; + type = types.enum ["http" "https"]; + }; + addr = mkOption { + description = "Grafana address."; + default = "127.0.0.1"; + type = types.str; + }; + port = mkOption { + description = "Grafana port."; + default = 3000; + type = types.int; + }; + + }; + addr = mkOption { + description = "Listening address."; + default = "127.0.0.1"; + type = types.str; + }; + + port = mkOption { + description = "Listening port."; + default = 8686; + type = types.int; + }; + + templateDir = mkOption { + description = "Optional template directory to use custom tex templates"; + default = "${pkgs.grafana_reporter}"; + type = types.str; + }; + }; + + config = mkIf cfg.enable { + systemd.services.grafana_reporter = { + description = "Grafana Reporter Service Daemon"; + wantedBy = ["multi-user.target"]; + after = ["network.target"]; + serviceConfig = let + args = lib.concatSepString " " [ + "-proto ${cfg.grafana.protocol}://" + "-ip ${cfg.grafana.addr}:${toString cfg.grafana.port}" + "-port :${toString cfg.port}" + "-templates ${cfg.templateDir}" + ]; + in { + ExecStart = "${pkgs.grafana_reporter.bin}/bin/grafana-reporter ${args}"; + }; + }; + }; +} diff --git a/nixos/modules/services/monitoring/kapacitor.nix b/nixos/modules/services/monitoring/kapacitor.nix new file mode 100644 index 0000000000000000000000000000000000000000..a4bdfa8f80535652faca688647bd5b302796680a --- /dev/null +++ b/nixos/modules/services/monitoring/kapacitor.nix @@ -0,0 +1,192 @@ +{ options, config, lib, pkgs, ... }: + +with lib; + +let + cfg = config.services.kapacitor; + + kapacitorConf = pkgs.writeTextFile { + name = "kapacitord.conf"; + text = '' + hostname="${config.networking.hostName}" + data_dir="${cfg.dataDir}" + + [http] + bind-address = "${cfg.bind}:${toString cfg.port}" + log-enabled = false + auth-enabled = false + + [task] + dir = "${cfg.dataDir}/tasks" + snapshot-interval = "${cfg.taskSnapshotInterval}" + + [replay] + dir = "${cfg.dataDir}/replay" + + [storage] + boltdb = "${cfg.dataDir}/kapacitor.db" + + ${optionalString (cfg.loadDirectory != null) '' + [load] + enabled = true + dir = "${cfg.loadDirectory}" + ''} + + ${optionalString (cfg.defaultDatabase.enable) '' + [[influxdb]] + name = "default" + enabled = true + default = true + urls = [ "${cfg.defaultDatabase.url}" ] + username = "${cfg.defaultDatabase.username}" + password = "${cfg.defaultDatabase.password}" + ''} + + ${optionalString (cfg.alerta.enable) '' + [alerta] + enabled = true + url = "${cfg.alerta.url}" + token = "${cfg.alerta.token}" + environment = "${cfg.alerta.environment}" + origin = "${cfg.alerta.origin}" + ''} + + ${cfg.extraConfig} + ''; + }; +in +{ + options.services.kapacitor = { + enable = mkEnableOption "kapacitor"; + + dataDir = mkOption { + type = types.path; + example = "/var/lib/kapacitor"; + default = "/var/lib/kapacitor"; + description = "Location where Kapacitor stores its state"; + }; + + port = mkOption { + type = types.int; + default = 9092; + description = "Port of Kapacitor"; + }; + + bind = mkOption { + type = types.str; + default = ""; + example = literalExample "0.0.0.0"; + description = "Address to bind to. The default is to bind to all addresses"; + }; + + extraConfig = mkOption { + description = "These lines go into kapacitord.conf verbatim."; + default = ""; + type = types.lines; + }; + + user = mkOption { + type = types.str; + default = "kapacitor"; + description = "User account under which Kapacitor runs"; + }; + + group = mkOption { + type = types.str; + default = "kapacitor"; + description = "Group under which Kapacitor runs"; + }; + + taskSnapshotInterval = mkOption { + type = types.str; + description = "Specifies how often to snapshot the task state (in InfluxDB time units)"; + default = "1m0s"; + example = "1m0s"; + }; + + loadDirectory = mkOption { + type = types.nullOr types.path; + description = "Directory where to load services from, such as tasks, templates and handlers (or null to disable service loading on startup)"; + default = null; + }; + + defaultDatabase = { + enable = mkEnableOption "kapacitor.defaultDatabase"; + + url = mkOption { + description = "The URL to an InfluxDB server that serves as the default database"; + example = "http://localhost:8086"; + type = types.string; + }; + + username = mkOption { + description = "The username to connect to the remote InfluxDB server"; + type = types.string; + }; + + password = mkOption { + description = "The password to connect to the remote InfluxDB server"; + type = types.string; + }; + }; + + alerta = { + enable = mkEnableOption "kapacitor alerta integration"; + + url = mkOption { + description = "The URL to the Alerta REST API"; + default = "http://localhost:5000"; + example = "http://localhost:5000"; + type = types.string; + }; + + token = mkOption { + description = "Default Alerta authentication token"; + type = types.str; + default = ""; + }; + + environment = mkOption { + description = "Default Alerta environment"; + type = types.str; + default = "Production"; + }; + + origin = mkOption { + description = "Default origin of alert"; + type = types.str; + default = "kapacitor"; + }; + }; + }; + + config = mkIf cfg.enable { + environment.systemPackages = [ pkgs.kapacitor ]; + + systemd.services.kapacitor = { + description = "Kapacitor Real-Time Stream Processing Engine"; + wantedBy = [ "multi-user.target" ]; + after = [ "networking.target" ]; + serviceConfig = { + ExecStart = "${pkgs.kapacitor}/bin/kapacitord -config ${kapacitorConf}"; + User = "kapacitor"; + Group = "kapacitor"; + PermissionsStartOnly = true; + }; + preStart = '' + mkdir -p ${cfg.dataDir} + chown ${cfg.user}:${cfg.group} ${cfg.dataDir} + ''; + }; + + users.users.kapacitor = { + uid = config.ids.uids.kapacitor; + description = "Kapacitor user"; + home = cfg.dataDir; + }; + + users.groups.kapacitor = { + gid = config.ids.gids.kapacitor; + }; + }; +} diff --git a/nixos/modules/services/monitoring/monit.nix b/nixos/modules/services/monitoring/monit.nix index d48e5c550abbf1b6ca9bfa9e11efb7a2dadd65df..32e14ab21ffc82ed52f3534580b8856cfbceb556 100644 --- a/nixos/modules/services/monitoring/monit.nix +++ b/nixos/modules/services/monitoring/monit.nix @@ -1,33 +1,30 @@ -# Monit system watcher -# http://mmonit.org/monit/ - {config, pkgs, lib, ...}: -let inherit (lib) mkOption mkIf; +with lib; + +let + cfg = config.services.monit; in { - options = { - services.monit = { - enable = mkOption { - default = false; - description = '' - Whether to run Monit system watcher. - ''; - }; - config = mkOption { - default = ""; - description = "monitrc content"; - }; + options.services.monit = { + + enable = mkEnableOption "Monit"; + + config = mkOption { + type = types.lines; + default = ""; + description = "monitrc content"; }; + }; - config = mkIf config.services.monit.enable { + config = mkIf cfg.enable { environment.systemPackages = [ pkgs.monit ]; environment.etc."monitrc" = { - text = config.services.monit.config; + text = cfg.config; mode = "0400"; }; diff --git a/nixos/modules/services/monitoring/prometheus/default.nix b/nixos/modules/services/monitoring/prometheus/default.nix index e2ee995cea801c6a17e240fff189dd0e0796cb79..bf4dfc666bb6a94a6558ab100ffaa5ce4bbb8f2f 100644 --- a/nixos/modules/services/monitoring/prometheus/default.nix +++ b/nixos/modules/services/monitoring/prometheus/default.nix @@ -10,6 +10,13 @@ let # Get a submodule without any embedded metadata: _filter = x: filterAttrs (k: v: k != "_module") x; + # a wrapper that verifies that the configuration is valid + promtoolCheck = what: name: file: pkgs.runCommand "${name}-${what}-checked" + { buildInputs = [ cfg.package ]; } '' + ln -s ${file} $out + promtool ${what} $out + ''; + # Pretty-print JSON to a file writePrettyJSON = name: x: pkgs.runCommand name { } '' @@ -19,18 +26,19 @@ let # This becomes the main config file promConfig = { global = cfg.globalConfig; - rule_files = cfg.ruleFiles ++ [ + rule_files = map (promtoolCheck "check-rules" "rules") (cfg.ruleFiles ++ [ (pkgs.writeText "prometheus.rules" (concatStringsSep "\n" cfg.rules)) - ]; + ]); scrape_configs = cfg.scrapeConfigs; }; generatedPrometheusYml = writePrettyJSON "prometheus.yml" promConfig; - prometheusYml = - if cfg.configText != null then + prometheusYml = let + yml = if cfg.configText != null then pkgs.writeText "prometheus.yml" cfg.configText - else generatedPrometheusYml; + else generatedPrometheusYml; + in promtoolCheck "check-config" "prometheus.yml" yml; cmdlineArgs = cfg.extraFlags ++ [ "-storage.local.path=${cfg.dataDir}/metrics" @@ -376,6 +384,15 @@ in { ''; }; + package = mkOption { + type = types.package; + default = pkgs.prometheus; + defaultText = "pkgs.prometheus"; + description = '' + The prometheus package that should be used. + ''; + }; + listenAddress = mkOption { type = types.str; default = "0.0.0.0:9090"; @@ -495,7 +512,7 @@ in { after = [ "network.target" ]; script = '' #!/bin/sh - exec ${pkgs.prometheus}/bin/prometheus \ + exec ${cfg.package}/bin/prometheus \ ${concatStringsSep " \\\n " cmdlineArgs} ''; serviceConfig = { diff --git a/nixos/modules/services/network-filesystems/glusterfs.nix b/nixos/modules/services/network-filesystems/glusterfs.nix index 8ac9f801dcb8b5e991a62006e5b10cb1925f01ad..adf59100f06712d55988e608f5509f3ffc187eb2 100644 --- a/nixos/modules/services/network-filesystems/glusterfs.nix +++ b/nixos/modules/services/network-filesystems/glusterfs.nix @@ -198,6 +198,9 @@ in install -m 0755 -d /var/log/glusterfs ''; + # glustereventsd uses the `gluster` executable + path = [ glusterfs ]; + serviceConfig = { Type="simple"; Environment="PYTHONPATH=${glusterfs}/usr/lib/python2.7/site-packages"; diff --git a/nixos/modules/services/networking/bitlbee.nix b/nixos/modules/services/networking/bitlbee.nix index 46e3b7457610174c807ec105454eabc94d97217a..274b36171608e863ad26f4a0874e3f8ddc620038 100644 --- a/nixos/modules/services/networking/bitlbee.nix +++ b/nixos/modules/services/networking/bitlbee.nix @@ -33,7 +33,7 @@ let purple_plugin_path = lib.concatMapStringsSep ":" - (plugin: "${plugin}/lib/pidgin/") + (plugin: "${plugin}/lib/pidgin/:${plugin}/lib/purple-2/") cfg.libpurple_plugins ; diff --git a/nixos/modules/services/networking/chrony.nix b/nixos/modules/services/networking/chrony.nix index a363b545d649a3974d3f23346cd757526cb3918c..9b8005e706aebb8cb218a249623b1a892628fd8b 100644 --- a/nixos/modules/services/networking/chrony.nix +++ b/nixos/modules/services/networking/chrony.nix @@ -93,6 +93,8 @@ in services.timesyncd.enable = mkForce false; + systemd.services.systemd-timedated.environment = { SYSTEMD_TIMEDATED_NTP_SERVICES = "chronyd.service"; }; + systemd.services.chronyd = { description = "chrony NTP daemon"; diff --git a/nixos/modules/services/networking/consul.nix b/nixos/modules/services/networking/consul.nix index ab3f81037681170f30fcdc29bea67ede3504c0fd..0e90fed788b9c2764e93e6a2a7ff2a78e5ecfb54 100644 --- a/nixos/modules/services/networking/consul.nix +++ b/nixos/modules/services/networking/consul.nix @@ -6,9 +6,10 @@ let dataDir = "/var/lib/consul"; cfg = config.services.consul; - configOptions = { data_dir = dataDir; } // - (if cfg.webUi then { ui_dir = "${cfg.package.ui}"; } else { }) // - cfg.extraConfig; + configOptions = { + data_dir = dataDir; + ui = cfg.webUi; + } // cfg.extraConfig; configFiles = [ "/etc/consul.json" "/etc/consul-addrs.json" ] ++ cfg.extraConfigFiles; diff --git a/nixos/modules/services/networking/ntpd.nix b/nixos/modules/services/networking/ntpd.nix index 342350d49ab32089ea0311850881f781dc7ce79b..32174100b0f78bb564e3f5c32393b62997cd42ff 100644 --- a/nixos/modules/services/networking/ntpd.nix +++ b/nixos/modules/services/networking/ntpd.nix @@ -67,6 +67,8 @@ in environment.systemPackages = [ pkgs.ntp ]; services.timesyncd.enable = mkForce false; + systemd.services.systemd-timedated.environment = { SYSTEMD_TIMEDATED_NTP_SERVICES = "ntpd.service"; }; + users.users = singleton { name = ntpUser; uid = config.ids.uids.ntp; diff --git a/nixos/modules/services/networking/redsocks.nix b/nixos/modules/services/networking/redsocks.nix index a47a78f1005e38d7fbe98554b206c3d823cbca43..8481f9debf39cd16c038b4a5286c0788c6846cf4 100644 --- a/nixos/modules/services/networking/redsocks.nix +++ b/nixos/modules/services/networking/redsocks.nix @@ -267,4 +267,6 @@ in "ip46tables -t nat -D OUTPUT -p tcp ${redCond block} -j ${chain} 2>/dev/null || true" ) cfg.redsocks; }; + + meta.maintainers = with lib.maintainers; [ ekleog ]; } diff --git a/nixos/modules/services/networking/ssh/sshd.nix b/nixos/modules/services/networking/ssh/sshd.nix index c16fbe8a52fa2450c0d8b6885515612c67509faf..5fab79f1b3d73d77ddf941104cf23a0d9b2cd418 100644 --- a/nixos/modules/services/networking/ssh/sshd.nix +++ b/nixos/modules/services/networking/ssh/sshd.nix @@ -130,7 +130,7 @@ in }; ports = mkOption { - type = types.listOf types.int; + type = types.listOf types.port; default = [22]; description = '' Specifies on which ports the SSH daemon listens. diff --git a/nixos/modules/services/networking/syncthing.nix b/nixos/modules/services/networking/syncthing.nix index fd31b2a676874e5d9572b8aedff0bce079599b2d..b2ef1885a9555e584c4912c6e9342c4e61f8e05e 100644 --- a/nixos/modules/services/networking/syncthing.nix +++ b/nixos/modules/services/networking/syncthing.nix @@ -62,9 +62,21 @@ in { dataDir = mkOption { type = types.path; default = "/var/lib/syncthing"; + description = '' + Path where synced directories will exist. + ''; + }; + + configDir = mkOption { + type = types.path; description = '' Path where the settings and keys will exist. ''; + default = + let + nixos = config.system.stateVersion; + cond = versionAtLeast nixos "19.03"; + in cfg.dataDir + (optionalString cond "/.config/syncthing"); }; openDefaultPorts = mkOption { @@ -144,7 +156,7 @@ in { ${cfg.package}/bin/syncthing \ -no-browser \ -gui-address=${cfg.guiAddress} \ - -home=${cfg.dataDir} + -home=${cfg.configDir} ''; }; }; diff --git a/nixos/modules/services/networking/zerotierone.nix b/nixos/modules/services/networking/zerotierone.nix index a4cd368397e71fc9b684d203b878dc42feea4745..764af3846fe5dd5ac8e92e46c406929a7be3c73a 100644 --- a/nixos/modules/services/networking/zerotierone.nix +++ b/nixos/modules/services/networking/zerotierone.nix @@ -39,7 +39,8 @@ in systemd.services.zerotierone = { description = "ZeroTierOne"; path = [ cfg.package ]; - after = [ "network.target" ]; + bindsTo = [ "network-online.target" ]; + after = [ "network-online.target" ]; wantedBy = [ "multi-user.target" ]; preStart = '' mkdir -p /var/lib/zerotier-one/networks.d diff --git a/nixos/modules/services/search/solr.nix b/nixos/modules/services/search/solr.nix index 90140a337ed8c509da9472f05cfc382327413a29..7200c40e89f7f6f2ba93c720c9b3448ef4728744 100644 --- a/nixos/modules/services/search/solr.nix +++ b/nixos/modules/services/search/solr.nix @@ -6,142 +6,105 @@ let cfg = config.services.solr; - # Assemble all jars needed for solr - solrJars = pkgs.stdenv.mkDerivation { - name = "solr-jars"; - - src = pkgs.fetchurl { - url = http://archive.apache.org/dist/tomcat/tomcat-5/v5.5.36/bin/apache-tomcat-5.5.36.tar.gz; - sha256 = "01mzvh53wrs1p2ym765jwd00gl6kn8f9k3nhdrnhdqr8dhimfb2p"; - }; - - installPhase = '' - mkdir -p $out/lib - cp common/lib/*.jar $out/lib/ - ln -s ${pkgs.ant}/lib/ant/lib/ant.jar $out/lib/ - ln -s ${cfg.solrPackage}/lib/ext/* $out/lib/ - ln -s ${pkgs.jdk.home}/lib/tools.jar $out/lib/ - '' + optionalString (cfg.extraJars != []) '' - for f in ${concatStringsSep " " cfg.extraJars}; do - cp $f $out/lib - done - ''; - }; - -in { +in +{ options = { services.solr = { - enable = mkOption { - type = types.bool; - default = false; - description = '' - Enables the solr service. - ''; - }; - - javaPackage = mkOption { - type = types.package; - default = pkgs.jre; - defaultText = "pkgs.jre"; - description = '' - Which Java derivation to use for running solr. - ''; - }; + enable = mkEnableOption "Enables the solr service."; - solrPackage = mkOption { + package = mkOption { type = types.package; default = pkgs.solr; defaultText = "pkgs.solr"; - description = '' - Which solr derivation to use for running solr. - ''; + description = "Which Solr package to use."; }; - extraJars = mkOption { - type = types.listOf types.path; - default = []; - description = '' - List of paths pointing to jars. Jars are copied to commonLibFolder to be available to java/solr. - ''; + port = mkOption { + type = types.int; + default = 8983; + description = "Port on which Solr is ran."; }; - log4jConfiguration = mkOption { - type = types.lines; - default = '' - log4j.rootLogger=INFO, stdout - log4j.appender.stdout=org.apache.log4j.ConsoleAppender - log4j.appender.stdout.Target=System.out - log4j.appender.stdout.layout=org.apache.log4j.PatternLayout - log4j.appender.stdout.layout.ConversionPattern=%d{yyyy-MM-dd HH:mm:ss} %-5p %c{1}:%L - %m%n - ''; - description = '' - Contents of the log4j.properties used. By default, - everything is logged to stdout (picked up by systemd) with level INFO. - ''; + stateDir = mkOption { + type = types.path; + default = "/var/lib/solr"; + description = "The solr home directory containing config, data, and logging files."; }; - user = mkOption { - type = types.str; - description = '' - The user that should run the solr process and. - the working directories. - ''; + extraJavaOptions = mkOption { + type = types.listOf types.str; + default = []; + description = "Extra command line options given to the java process running Solr."; }; - group = mkOption { + user = mkOption { type = types.str; - description = '' - The group that will own the working directory. - ''; + default = "solr"; + description = "User under which Solr is ran."; }; - solrHome = mkOption { + group = mkOption { type = types.str; - description = '' - The solr home directory. It is your own responsibility to - make sure this directory contains a working solr configuration, - and is writeable by the the user running the solr service. - Failing to do so, the solr will not start properly. - ''; - }; - - extraJavaOptions = mkOption { - type = types.listOf types.str; - default = []; - description = '' - Extra command line options given to the java process running - solr. - ''; - }; - - extraWinstoneOptions = mkOption { - type = types.listOf types.str; - default = []; - description = '' - Extra command line options given to the Winstone, which is - the servlet container hosting solr. - ''; + default = "solr"; + description = "Group under which Solr is ran."; }; }; }; config = mkIf cfg.enable { - services.winstone.solr = { - serviceName = "solr"; - inherit (cfg) user group javaPackage; - warFile = "${cfg.solrPackage}/lib/solr.war"; - extraOptions = [ - "--commonLibFolder=${solrJars}/lib" - "--useJasper" - ] ++ cfg.extraWinstoneOptions; - extraJavaOptions = [ - "-Dsolr.solr.home=${cfg.solrHome}" - "-Dlog4j.configuration=file://${pkgs.writeText "log4j.properties" cfg.log4jConfiguration}" - ] ++ cfg.extraJavaOptions; + environment.systemPackages = [ cfg.package ]; + + systemd.services.solr = { + after = [ "network.target" "remote-fs.target" "nss-lookup.target" "systemd-journald-dev-log.socket" ]; + wantedBy = [ "multi-user.target" ]; + + environment = { + SOLR_HOME = "${cfg.stateDir}/data"; + LOG4J_PROPS = "${cfg.stateDir}/log4j2.xml"; + SOLR_LOGS_DIR = "${cfg.stateDir}/logs"; + SOLR_PORT = "${toString cfg.port}"; + }; + path = with pkgs; [ + gawk + procps + ]; + preStart = '' + mkdir -p "${cfg.stateDir}/data"; + mkdir -p "${cfg.stateDir}/logs"; + + if ! test -e "${cfg.stateDir}/data/solr.xml"; then + install -D -m0640 ${cfg.package}/server/solr/solr.xml "${cfg.stateDir}/data/solr.xml" + install -D -m0640 ${cfg.package}/server/solr/zoo.cfg "${cfg.stateDir}/data/zoo.cfg" + fi + + if ! test -e "${cfg.stateDir}/log4j2.xml"; then + install -D -m0640 ${cfg.package}/server/resources/log4j2.xml "${cfg.stateDir}/log4j2.xml" + fi + ''; + + serviceConfig = { + User = cfg.user; + Group = cfg.group; + ExecStart="${cfg.package}/bin/solr start -f -a \"${concatStringsSep " " cfg.extraJavaOptions}\""; + ExecStop="${cfg.package}/bin/solr stop"; + }; }; + users.users = optionalAttrs (cfg.user == "solr") (singleton + { name = "solr"; + group = cfg.group; + home = cfg.stateDir; + createHome = true; + uid = config.ids.uids.solr; + }); + + users.groups = optionalAttrs (cfg.group == "solr") (singleton + { name = "solr"; + gid = config.ids.gids.solr; + }); + }; } diff --git a/nixos/modules/services/system/cloud-init.nix b/nixos/modules/services/system/cloud-init.nix index 1a700828ce77cad82d1ac472f1e11daac7846b58..f22bd45dfebcd402daebb11d663d270090ff447e 100644 --- a/nixos/modules/services/system/cloud-init.nix +++ b/nixos/modules/services/system/cloud-init.nix @@ -3,13 +3,20 @@ with lib; let cfg = config.services.cloud-init; - path = with pkgs; [ cloud-init nettools utillinux e2fsprogs shadow openssh iproute ]; + path = with pkgs; [ + cloud-init + iproute + nettools + openssh + shadow + utillinux + ] ++ optional cfg.btrfs.enable btrfs-progs + ++ optional cfg.ext4.enable e2fsprogs + ; in { options = { - services.cloud-init = { - enable = mkOption { type = types.bool; default = false; @@ -29,6 +36,22 @@ in ''; }; + btrfs.enable = mkOption { + type = types.bool; + default = false; + description = '' + Allow the cloud-init service to operate `btrfs` filesystem. + ''; + }; + + ext4.enable = mkOption { + type = types.bool; + default = true; + description = '' + Allow the cloud-init service to operate `ext4` filesystem. + ''; + }; + config = mkOption { type = types.str; default = '' diff --git a/nixos/modules/services/web-apps/nextcloud.nix b/nixos/modules/services/web-apps/nextcloud.nix index c7e97bbeba9adb9a7e008c56eadb31b0764a7cc6..d0efdf88d73cf0bdc10a88c3d518b6a6137cadf8 100644 --- a/nixos/modules/services/web-apps/nextcloud.nix +++ b/nixos/modules/services/web-apps/nextcloud.nix @@ -171,7 +171,12 @@ in { dbhost = mkOption { type = types.nullOr types.str; default = "localhost"; - description = "Database host."; + description = '' + Database host. + + Note: for using Unix authentication with PostgreSQL, this should be + set to /tmp. + ''; }; dbport = mkOption { type = with types; nullOr (either int str); diff --git a/nixos/modules/services/web-servers/tomcat.nix b/nixos/modules/services/web-servers/tomcat.nix index be54e9255c789d1b2b2b6aa40610a03e092440a1..68261c50324d0bd20f53c961ab4522097676f6a1 100644 --- a/nixos/modules/services/web-servers/tomcat.nix +++ b/nixos/modules/services/web-servers/tomcat.nix @@ -31,10 +31,26 @@ in ''; }; + purifyOnStart = mkOption { + type = types.bool; + default = false; + description = '' + On startup, the `baseDir` directory is populated with various files, + subdirectories and symlinks. If this option is enabled, these items + (except for the `logs` and `work` subdirectories) are first removed. + This prevents interference from remainders of an old configuration + (libraries, webapps, etc.), so it's recommended to enable this option. + ''; + }; + baseDir = mkOption { type = lib.types.path; default = "/var/tomcat"; - description = "Location where Tomcat stores configuration files, webapplications and logfiles"; + description = '' + Location where Tomcat stores configuration files, web applications + and logfiles. Note that it is partially cleared on each service startup + if `purifyOnStart` is enabled. + ''; }; logDirs = mkOption { @@ -197,6 +213,15 @@ in after = [ "network.target" ]; preStart = '' + ${lib.optionalString cfg.purifyOnStart '' + # Delete most directories/symlinks we create from the existing base directory, + # to get rid of remainders of an old configuration. + # The list of directories to delete is taken from the "mkdir" command below, + # excluding "logs" (because logs are valuable) and "work" (because normally + # session files are there), and additionally including "bin". + rm -rf ${cfg.baseDir}/{conf,virtualhosts,temp,lib,shared/lib,webapps,bin} + ''} + # Create the base directory mkdir -p \ ${cfg.baseDir}/{conf,virtualhosts,logs,temp,lib,shared/lib,webapps,work} diff --git a/nixos/modules/services/x11/display-managers/lightdm-greeters/gtk.nix b/nixos/modules/services/x11/display-managers/lightdm-greeters/gtk.nix index 013956c0546647ecfdeb4da05d7955b4c3e9302a..d1ee076e918583ffecbea35ab4cff7e978dae33d 100644 --- a/nixos/modules/services/x11/display-managers/lightdm-greeters/gtk.nix +++ b/nixos/modules/services/x11/display-managers/lightdm-greeters/gtk.nix @@ -22,7 +22,7 @@ let # This wrapper ensures that we actually get themes makeWrapper ${pkgs.lightdm_gtk_greeter}/sbin/lightdm-gtk-greeter \ $out/greeter \ - --prefix PATH : "${pkgs.glibc.bin}/bin" \ + --prefix PATH : "${lib.getBin pkgs.stdenv.cc.libc}/bin" \ --set GDK_PIXBUF_MODULE_FILE "${pkgs.librsvg.out}/lib/gdk-pixbuf-2.0/2.10.0/loaders.cache" \ --set GTK_PATH "${theme}:${pkgs.gtk3.out}" \ --set GTK_EXE_PREFIX "${theme}" \ diff --git a/nixos/modules/services/x11/display-managers/lightdm.nix b/nixos/modules/services/x11/display-managers/lightdm.nix index a685dbfff2a01d6fb6f33bd01f4a2ec3333773f1..e1688c451045e9e35005fb42d9775add1526a2d2 100644 --- a/nixos/modules/services/x11/display-managers/lightdm.nix +++ b/nixos/modules/services/x11/display-managers/lightdm.nix @@ -208,15 +208,11 @@ in } ]; - services.xserver.displayManager.job = { - logToFile = true; - - # lightdm relaunches itself via just `lightdm`, so needs to be on the PATH - execCmd = '' - export PATH=${lightdm}/sbin:$PATH - exec ${lightdm}/sbin/lightdm - ''; - }; + # lightdm relaunches itself via just `lightdm`, so needs to be on the PATH + services.xserver.displayManager.job.execCmd = '' + export PATH=${lightdm}/sbin:$PATH + exec ${lightdm}/sbin/lightdm + ''; environment.etc."lightdm/lightdm.conf".source = lightdmConf; environment.etc."lightdm/users.conf".source = usersConf; diff --git a/nixos/modules/services/x11/display-managers/sddm.nix b/nixos/modules/services/x11/display-managers/sddm.nix index 522a0dc92d6f28076e597987c8857ac9541dce84..b7511dfd5a8baa0c62636b3eb88c13422f5bfe09 100644 --- a/nixos/modules/services/x11/display-managers/sddm.nix +++ b/nixos/modules/services/x11/display-managers/sddm.nix @@ -209,8 +209,6 @@ in ]; services.xserver.displayManager.job = { - logToFile = true; - environment = { # Load themes from system environment QT_PLUGIN_PATH = "/run/current-system/sw/" + pkgs.qt5.qtbase.qtPluginPrefix; diff --git a/nixos/modules/services/x11/display-managers/xpra.nix b/nixos/modules/services/x11/display-managers/xpra.nix index b46ede550c16e49bc85420077192a8f90d48d96c..a4b57cfdab6449bfaebe959bb4e60ae49df0dfa0 100644 --- a/nixos/modules/services/x11/display-managers/xpra.nix +++ b/nixos/modules/services/x11/display-managers/xpra.nix @@ -219,30 +219,26 @@ in VideoRam 192000 ''; - services.xserver.displayManager.job = { - logToFile = true; - - execCmd = '' - ${optionalString (cfg.pulseaudio) - "export PULSE_COOKIE=/var/run/pulse/.config/pulse/cookie"} - exec ${pkgs.xpra}/bin/xpra start \ - --daemon=off \ - --log-dir=/var/log \ - --log-file=xpra.log \ - --opengl=on \ - --clipboard=on \ - --notifications=on \ - --speaker=yes \ - --mdns=no \ - --pulseaudio=no \ - ${optionalString (cfg.pulseaudio) "--sound-source=pulse"} \ - --socket-dirs=/var/run/xpra \ - --xvfb="xpra_Xdummy ${concatStringsSep " " dmcfg.xserverArgs}" \ - ${optionalString (cfg.bindTcp != null) "--bind-tcp=${cfg.bindTcp}"} \ - --auth=${cfg.auth} \ - ${concatStringsSep " " cfg.extraOptions} - ''; - }; + services.xserver.displayManager.job.execCmd = '' + ${optionalString (cfg.pulseaudio) + "export PULSE_COOKIE=/var/run/pulse/.config/pulse/cookie"} + exec ${pkgs.xpra}/bin/xpra start \ + --daemon=off \ + --log-dir=/var/log \ + --log-file=xpra.log \ + --opengl=on \ + --clipboard=on \ + --notifications=on \ + --speaker=yes \ + --mdns=no \ + --pulseaudio=no \ + ${optionalString (cfg.pulseaudio) "--sound-source=pulse"} \ + --socket-dirs=/var/run/xpra \ + --xvfb="xpra_Xdummy ${concatStringsSep " " dmcfg.xserverArgs}" \ + ${optionalString (cfg.bindTcp != null) "--bind-tcp=${cfg.bindTcp}"} \ + --auth=${cfg.auth} \ + ${concatStringsSep " " cfg.extraOptions} + ''; services.xserver.terminateOnReset = false; diff --git a/nixos/modules/system/activation/activation-script.nix b/nixos/modules/system/activation/activation-script.nix index b1eaf0189562f713365a14f79aafc058092c7177..74c150a848d13f9812a788e330514ed1675fe0f2 100644 --- a/nixos/modules/system/activation/activation-script.nix +++ b/nixos/modules/system/activation/activation-script.nix @@ -21,7 +21,8 @@ let [ coreutils gnugrep findutils - glibc # needed for getent + getent + stdenv.cc.libc # nscd in update-users-groups.pl shadow nettools # needed for hostname utillinux # needed for mount and mountpoint diff --git a/nixos/modules/system/boot/stage-1-init.sh b/nixos/modules/system/boot/stage-1-init.sh index 3bc33a20a09f7d9af836ca224c985d1bf309a21c..6a4ac8128ab39680b6b3e8dde9515f361a527749 100644 --- a/nixos/modules/system/boot/stage-1-init.sh +++ b/nixos/modules/system/boot/stage-1-init.sh @@ -246,10 +246,7 @@ checkFS() { if [ "$fsType" = iso9660 -o "$fsType" = udf ]; then return 0; fi # Don't check resilient COWs as they validate the fs structures at mount time - if [ "$fsType" = btrfs -o "$fsType" = zfs ]; then return 0; fi - - # Skip fsck for bcachefs - not implemented yet. - if [ "$fsType" = bcachefs ]; then return 0; fi + if [ "$fsType" = btrfs -o "$fsType" = zfs -o "$fsType" = bcachefs ]; then return 0; fi # Skip fsck for nilfs2 - not needed by design and no fsck tool for this filesystem. if [ "$fsType" = nilfs2 ]; then return 0; fi diff --git a/nixos/modules/system/boot/stage-1.nix b/nixos/modules/system/boot/stage-1.nix index f4cf9753c0a13c2b2777f1291271e8441e75773b..e7167999a6f8bbb70daf8de61fafbd05fa6d9c26 100644 --- a/nixos/modules/system/boot/stage-1.nix +++ b/nixos/modules/system/boot/stage-1.nix @@ -147,7 +147,7 @@ let ${config.boot.initrd.extraUtilsCommands} # Copy ld manually since it isn't detected correctly - cp -pv ${pkgs.glibc.out}/lib/ld*.so.? $out/lib + cp -pv ${pkgs.stdenv.cc.libc.out}/lib/ld*.so.? $out/lib # Copy all of the needed libraries find $out/bin $out/lib -type f | while read BIN; do diff --git a/nixos/modules/system/boot/systemd-nspawn.nix b/nixos/modules/system/boot/systemd-nspawn.nix index f4fa09694537b04fda3a3ce04d33af81d464163d..4f538ccdbbe10aa2d9eeece1a26bfd864558f779 100644 --- a/nixos/modules/system/boot/systemd-nspawn.nix +++ b/nixos/modules/system/boot/systemd-nspawn.nix @@ -112,6 +112,7 @@ in { environment.etc."systemd/nspawn".source = generateUnits "nspawn" units [] []; + systemd.targets."multi-user".wants = [ "machines.target "]; }; } diff --git a/nixos/modules/tasks/filesystems.nix b/nixos/modules/tasks/filesystems.nix index b3690fad1a6a286c23c0f1df591ed973ac452755..9e4057b508970aa9e6a5f9466887f1a592242c5c 100644 --- a/nixos/modules/tasks/filesystems.nix +++ b/nixos/modules/tasks/filesystems.nix @@ -230,6 +230,8 @@ in let fsToSkipCheck = [ "none" "bindfs" "btrfs" "zfs" "tmpfs" "nfs" "vboxsf" "glusterfs" ]; skipCheck = fs: fs.noCheck || fs.device == "none" || builtins.elem fs.fsType fsToSkipCheck; + # https://wiki.archlinux.org/index.php/fstab#Filepath_spaces + escape = string: builtins.replaceStrings [ " " ] [ "\\040" ] string; in '' # This is a generated file. Do not edit! # @@ -238,10 +240,10 @@ in # Filesystems. ${concatMapStrings (fs: - (if fs.device != null then fs.device - else if fs.label != null then "/dev/disk/by-label/${fs.label}" + (if fs.device != null then escape fs.device + else if fs.label != null then "/dev/disk/by-label/${escape fs.label}" else throw "No device specified for mount point ‘${fs.mountPoint}’.") - + " " + fs.mountPoint + + " " + escape fs.mountPoint + " " + fs.fsType + " " + builtins.concatStringsSep "," fs.options + " 0" diff --git a/nixos/modules/tasks/filesystems/bcachefs.nix b/nixos/modules/tasks/filesystems/bcachefs.nix index 227707173a3df0fbf7c7a82064067808531dceb6..5fda24adb97823a61371b866667382aba149a234 100644 --- a/nixos/modules/tasks/filesystems/bcachefs.nix +++ b/nixos/modules/tasks/filesystems/bcachefs.nix @@ -1,26 +1,65 @@ -{ config, lib, pkgs, ... }: +{ config, lib, pkgs, utils, ... }: with lib; let - inInitrd = any (fs: fs == "bcachefs") config.boot.initrd.supportedFilesystems; + bootFs = filterAttrs (n: fs: (fs.fsType == "bcachefs") && (utils.fsNeededForBoot fs)) config.fileSystems; + + commonFunctions = '' + prompt() { + local name="$1" + printf "enter passphrase for $name: " + } + tryUnlock() { + local name="$1" + local path="$2" + if bcachefs unlock -c $path > /dev/null 2> /dev/null; then # test for encryption + prompt $name + until bcachefs unlock $path 2> /dev/null; do # repeat until sucessfully unlocked + printf "unlocking failed!\n" + prompt $name + done + printf "unlocking successful.\n" + fi + } + ''; + + openCommand = name: fs: + let + # we need only unlock one device manually, and cannot pass multiple at once + # remove this adaptation when bcachefs implements mounting by filesystem uuid + # also, implement automatic waiting for the constituent devices when that happens + # bcachefs does not support mounting devices with colons in the path, ergo we don't (see #49671) + firstDevice = head (splitString ":" fs.device); + in + '' + tryUnlock ${name} ${firstDevice} + ''; in { - config = mkIf (any (fs: fs == "bcachefs") config.boot.supportedFilesystems) { + config = mkIf (elem "bcachefs" config.boot.supportedFilesystems) (mkMerge [ + { + system.fsPackages = [ pkgs.bcachefs-tools ]; - system.fsPackages = [ pkgs.bcachefs-tools ]; + # use kernel package with bcachefs support until it's in mainline + boot.kernelPackages = pkgs.linuxPackages_testing_bcachefs; + } - # use kernel package with bcachefs support until it's in mainline - boot.kernelPackages = pkgs.linuxPackages_testing_bcachefs; - boot.initrd.availableKernelModules = mkIf inInitrd [ "bcachefs" ]; + (mkIf ((elem "bcachefs" config.boot.initrd.supportedFilesystems) || (bootFs != {})) { + # the cryptographic modules are required only for decryption attempts + boot.initrd.availableKernelModules = [ "bcachefs" "chacha20" "poly1305" ]; - boot.initrd.extraUtilsCommands = mkIf inInitrd - '' - copy_bin_and_libs ${pkgs.bcachefs-tools}/bin/fsck.bcachefs + boot.initrd.extraUtilsCommands = '' + copy_bin_and_libs ${pkgs.bcachefs-tools}/bin/bcachefs + ''; + boot.initrd.extraUtilsCommandsTest = '' + $out/bin/bcachefs version ''; - }; + boot.initrd.postDeviceCommands = commonFunctions + concatStrings (mapAttrsToList openCommand bootFs); + }) + ]); } diff --git a/nixos/modules/virtualisation/amazon-image.nix b/nixos/modules/virtualisation/amazon-image.nix index c92570582f2058a36b7b40434151f78d76248a08..9015200beeadba4f0b0d893585d79ad4177eb8dc 100644 --- a/nixos/modules/virtualisation/amazon-image.nix +++ b/nixos/modules/virtualisation/amazon-image.nix @@ -53,7 +53,7 @@ let cfg = config.ec2; in # Mount all formatted ephemeral disks and activate all swap devices. # We cannot do this with the ‘fileSystems’ and ‘swapDevices’ options # because the set of devices is dependent on the instance type - # (e.g. "m1.large" has one ephemeral filesystem and one swap device, + # (e.g. "m1.small" has one ephemeral filesystem and one swap device, # while "m1.large" has two ephemeral filesystems and no swap # devices). Also, put /tmp and /var on /disk0, since it has a lot # more space than the root device. Similarly, "move" /nix to /disk0 diff --git a/nixos/modules/virtualisation/containers.nix b/nixos/modules/virtualisation/containers.nix index 8fe59badd335e853a455c0bb66762d27503f880b..2fcc0f2542564ee27f4a024b6636bc8d23742058 100644 --- a/nixos/modules/virtualisation/containers.nix +++ b/nixos/modules/virtualisation/containers.nix @@ -243,6 +243,9 @@ let Restart = "on-failure"; + Slice = "machine.slice"; + Delegate = true; + # Hack: we don't want to kill systemd-nspawn, since we call # "machinectl poweroff" in preStop to shut down the # container cleanly. But systemd requires sending a signal @@ -606,7 +609,7 @@ in { config = { config, pkgs, ... }: { services.postgresql.enable = true; - services.postgresql.package = pkgs.postgresql96; + services.postgresql.package = pkgs.postgresql_9_6; system.stateVersion = "17.03"; }; @@ -657,6 +660,8 @@ in serviceConfig = serviceDirectives dummyConfig; }; in { + systemd.targets."multi-user".wants = [ "machines.target" ]; + systemd.services = listToAttrs (filter (x: x.value != null) ( # The generic container template used by imperative containers [{ name = "container@"; value = unit; }] @@ -680,7 +685,7 @@ in } // ( if config.autoStart then { - wantedBy = [ "multi-user.target" ]; + wantedBy = [ "machines.target" ]; wants = [ "network.target" ]; after = [ "network.target" ]; restartTriggers = [ config.path ]; diff --git a/nixos/modules/virtualisation/docker-preloader.nix b/nixos/modules/virtualisation/docker-preloader.nix new file mode 100644 index 0000000000000000000000000000000000000000..faa94f53d98f47f0adab7bf7846d53513f76e453 --- /dev/null +++ b/nixos/modules/virtualisation/docker-preloader.nix @@ -0,0 +1,135 @@ +{ config, lib, pkgs, ... }: + +with lib; +with builtins; + +let + cfg = config.virtualisation; + + sanitizeImageName = image: replaceStrings ["/"] ["-"] image.imageName; + hash = drv: head (split "-" (baseNameOf drv.outPath)); + # The label of an ext4 FS is limited to 16 bytes + labelFromImage = image: substring 0 16 (hash image); + + # The Docker image is loaded and some files from /var/lib/docker/ + # are written into a qcow image. + preload = image: pkgs.vmTools.runInLinuxVM ( + pkgs.runCommand "docker-preload-image-${sanitizeImageName image}" { + buildInputs = with pkgs; [ docker e2fsprogs utillinux curl kmod ]; + preVM = pkgs.vmTools.createEmptyImage { + size = cfg.dockerPreloader.qcowSize; + fullName = "docker-deamon-image.qcow2"; + }; + } + '' + mkfs.ext4 /dev/vda + e2label /dev/vda ${labelFromImage image} + mkdir -p /var/lib/docker + mount -t ext4 /dev/vda /var/lib/docker + + modprobe overlay + + # from https://github.com/tianon/cgroupfs-mount/blob/master/cgroupfs-mount + mount -t tmpfs -o uid=0,gid=0,mode=0755 cgroup /sys/fs/cgroup + cd /sys/fs/cgroup + for sys in $(awk '!/^#/ { if ($4 == 1) print $1 }' /proc/cgroups); do + mkdir -p $sys + if ! mountpoint -q $sys; then + if ! mount -n -t cgroup -o $sys cgroup $sys; then + rmdir $sys || true + fi + fi + done + + dockerd -H tcp://127.0.0.1:5555 -H unix:///var/run/docker.sock & + + until $(curl --output /dev/null --silent --connect-timeout 2 http://127.0.0.1:5555); do + printf '.' + sleep 1 + done + + docker load -i ${image} + + kill %1 + find /var/lib/docker/ -maxdepth 1 -mindepth 1 -not -name "image" -not -name "overlay2" | xargs rm -rf + ''); + + preloadedImages = map preload cfg.dockerPreloader.images; + +in + +{ + options.virtualisation.dockerPreloader = { + images = mkOption { + default = [ ]; + type = types.listOf types.package; + description = + '' + A list of Docker images to preload (in the /var/lib/docker directory). + ''; + }; + qcowSize = mkOption { + default = 1024; + type = types.int; + description = + '' + The size (MB) of qcow files. + ''; + }; + }; + + config = { + assertions = [{ + # If docker.storageDriver is null, Docker choose the storage + # driver. So, in this case, we cannot be sure overlay2 is used. + assertion = cfg.dockerPreloader.images == [] + || cfg.docker.storageDriver == "overlay2" + || cfg.docker.storageDriver == "overlay" + || cfg.docker.storageDriver == null; + message = "The Docker image Preloader only works with overlay2 storage driver!"; + }]; + + virtualisation.qemu.options = + map (path: "-drive if=virtio,file=${path}/disk-image.qcow2,readonly,media=cdrom,format=qcow2") + preloadedImages; + + + # All attached QCOW files are mounted and their contents are linked + # to /var/lib/docker/ in order to make image available. + systemd.services.docker-preloader = { + description = "Preloaded Docker images"; + wantedBy = ["docker.service"]; + after = ["network.target"]; + path = with pkgs; [ mount rsync jq ]; + script = '' + mkdir -p /var/lib/docker/overlay2/l /var/lib/docker/image/overlay2 + echo '{}' > /tmp/repositories.json + + for i in ${concatStringsSep " " (map labelFromImage cfg.dockerPreloader.images)}; do + mkdir -p /mnt/docker-images/$i + + # The ext4 label is limited to 16 bytes + mount /dev/disk/by-label/$(echo $i | cut -c1-16) -o ro,noload /mnt/docker-images/$i + + find /mnt/docker-images/$i/overlay2/ -maxdepth 1 -mindepth 1 -not -name l\ + -exec ln -s '{}' /var/lib/docker/overlay2/ \; + cp -P /mnt/docker-images/$i/overlay2/l/* /var/lib/docker/overlay2/l/ + + rsync -a /mnt/docker-images/$i/image/ /var/lib/docker/image/ + + # Accumulate image definitions + cp /tmp/repositories.json /tmp/repositories.json.tmp + jq -s '.[0] * .[1]' \ + /tmp/repositories.json.tmp \ + /mnt/docker-images/$i/image/overlay2/repositories.json \ + > /tmp/repositories.json + done + + mv /tmp/repositories.json /var/lib/docker/image/overlay2/repositories.json + ''; + serviceConfig = { + Type = "oneshot"; + }; + }; + }; +} diff --git a/nixos/modules/virtualisation/google-compute-image.nix b/nixos/modules/virtualisation/google-compute-image.nix index caaf6c0aa59d997855fc6ae2db475f2aba265616..795858e5eae2b352e10022500a8510243938cf60 100644 --- a/nixos/modules/virtualisation/google-compute-image.nix +++ b/nixos/modules/virtualisation/google-compute-image.nix @@ -144,7 +144,6 @@ in path = with pkgs; [ iproute ]; serviceConfig = { ExecStart = "${gce}/bin/google_network_daemon --debug"; - Type = "oneshot"; }; }; diff --git a/nixos/modules/virtualisation/libvirtd.nix b/nixos/modules/virtualisation/libvirtd.nix index 3e38662f5b0fd2e447dcc14443e08c86e0e2780c..f4d7af1664af82007be6e1de89cbd06c97892c88 100644 --- a/nixos/modules/virtualisation/libvirtd.nix +++ b/nixos/modules/virtualisation/libvirtd.nix @@ -196,6 +196,8 @@ in { wantedBy = [ "multi-user.target" ]; path = with pkgs; [ coreutils libvirt gawk ]; restartIfChanged = false; + + environment.ON_SHUTDOWN = "${cfg.onShutdown}"; }; systemd.sockets.virtlogd = { diff --git a/nixos/modules/virtualisation/parallels-guest.nix b/nixos/modules/virtualisation/parallels-guest.nix index 36ca7f356d442f1c8de177242e17090aee4738a3..4e0f2cae299ec8fecbab4b26c06bea44713139d1 100644 --- a/nixos/modules/virtualisation/parallels-guest.nix +++ b/nixos/modules/virtualisation/parallels-guest.nix @@ -1,4 +1,4 @@ -{ config, lib, pkgs, pkgs_i686, ... }: +{ config, lib, pkgs, ... }: with lib; @@ -64,7 +64,7 @@ in }; hardware.opengl.package = prl-tools; - hardware.opengl.package32 = pkgs_i686.linuxPackages.prl-tools.override { libsOnly = true; kernel = null; }; + hardware.opengl.package32 = pkgs.pkgsi686Linux.linuxPackages.prl-tools.override { libsOnly = true; kernel = null; }; services.udev.packages = [ prl-tools ]; diff --git a/nixos/modules/virtualisation/qemu-vm.nix b/nixos/modules/virtualisation/qemu-vm.nix index 4e9c87222d0a853fa2491b98e0a040993a265f0e..ed3431554be452d5566e711767cd3d7ead50f2fb 100644 --- a/nixos/modules/virtualisation/qemu-vm.nix +++ b/nixos/modules/virtualisation/qemu-vm.nix @@ -185,7 +185,10 @@ let in { - imports = [ ../profiles/qemu-guest.nix ]; + imports = [ + ../profiles/qemu-guest.nix + ./docker-preloader.nix + ]; options = { diff --git a/nixos/release.nix b/nixos/release.nix index 46dbe4aa77b278c64fc68ea8722a35779f19cd19..e6abd003e881e921450dc6555721a394816aaeb0 100644 --- a/nixos/release.nix +++ b/nixos/release.nix @@ -14,28 +14,19 @@ let versionSuffix = (if stableBranch then "." else "pre") + "${toString nixpkgs.revCount}.${nixpkgs.shortRev}"; - importTest = fn: args: system: import fn ({ - inherit system; - } // args); - - # Note: only supportedSystems are considered. - callTestOnMatchingSystems = systems: fn: args: - forMatchingSystems - (intersectLists supportedSystems systems) - (system: hydraJob (importTest fn args system)); - callTest = callTestOnMatchingSystems supportedSystems; - - callSubTests = callSubTestsOnMatchingSystems supportedSystems; - callSubTestsOnMatchingSystems = systems: fn: args: let - discover = attrs: let - subTests = filterAttrs (const (hasAttr "test")) attrs; - in mapAttrs (const (t: hydraJob t.test)) subTests; - - discoverForSystem = system: mapAttrs (_: test: { - ${system} = test; - }) (discover (importTest fn args system)); - - in foldAttrs mergeAttrs {} (map discoverForSystem (intersectLists systems supportedSystems)); + # Run the tests for each platform. You can run a test by doing + # e.g. ‘nix-build -A tests.login.x86_64-linux’, or equivalently, + # ‘nix-build tests/login.nix -A result’. + allTestsForSystem = system: + import ./tests/all-tests.nix { + inherit system; + pkgs = import nixpkgs { inherit system; }; + callTest = t: { + ${system} = hydraJob t.test; + }; + }; + allTests = + foldAttrs recursiveUpdate {} (map allTestsForSystem supportedSystems); pkgs = import nixpkgs { system = "x86_64-linux"; }; @@ -45,6 +36,7 @@ let system.nixos.revision = nixpkgs.rev or nixpkgs.shortRev; }; + makeModules = module: rest: [ configuration versionModule module rest ]; makeIso = { module, type, system, ... }: @@ -53,7 +45,9 @@ let hydraJob ((import lib/eval-config.nix { inherit system; - modules = [ configuration module versionModule { isoImage.isoBaseName = "nixos-${type}"; } ]; + modules = makeModules module { + isoImage.isoBaseName = "nixos-${type}"; + }; }).config.system.build.isoImage); @@ -64,7 +58,7 @@ let hydraJob ((import lib/eval-config.nix { inherit system; - modules = [ configuration module versionModule ]; + modules = makeModules module {}; }).config.system.build.sdImage); @@ -77,7 +71,7 @@ let config = (import lib/eval-config.nix { inherit system; - modules = [ configuration module versionModule ]; + modules = makeModules module {}; }).config; tarball = config.system.build.tarball; @@ -97,7 +91,7 @@ let buildFromConfig = module: sel: forAllSystems (system: hydraJob (sel (import ./lib/eval-config.nix { inherit system; - modules = [ configuration module versionModule ] ++ singleton + modules = makeModules module ({ ... }: { fileSystems."/".device = mkDefault "/dev/sda1"; boot.loader.grub.device = mkDefault "/dev/sda"; @@ -108,7 +102,7 @@ let let configEvaled = import lib/eval-config.nix { inherit system; - modules = [ module versionModule ]; + modules = makeModules module {}; }; build = configEvaled.config.system.build; kernelTarget = configEvaled.pkgs.stdenv.hostPlatform.platform.kernelTarget; @@ -242,196 +236,7 @@ in rec { }; */ - - # Run the tests for each platform. You can run a test by doing - # e.g. ‘nix-build -A tests.login.x86_64-linux’, or equivalently, - # ‘nix-build tests/login.nix -A result’. - tests.atd = callTest tests/atd.nix {}; - tests.acme = callTest tests/acme.nix {}; - tests.avahi = callTest tests/avahi.nix {}; - tests.beegfs = callTest tests/beegfs.nix {}; - tests.upnp = callTest tests/upnp.nix {}; - tests.bittorrent = callTest tests/bittorrent.nix {}; - tests.bind = callTest tests/bind.nix {}; - #tests.blivet = callTest tests/blivet.nix {}; # broken since 2017-07024 - tests.boot = callSubTests tests/boot.nix {}; - tests.boot-stage1 = callTest tests/boot-stage1.nix {}; - tests.borgbackup = callTest tests/borgbackup.nix {}; - tests.buildbot = callSubTests tests/buildbot.nix {}; - tests.cadvisor = callTestOnMatchingSystems ["x86_64-linux"] tests/cadvisor.nix {}; - tests.ceph = callTestOnMatchingSystems ["x86_64-linux"] tests/ceph.nix {}; - tests.certmgr = callSubTests tests/certmgr.nix {}; - tests.cfssl = callTestOnMatchingSystems ["x86_64-linux"] tests/cfssl.nix {}; - tests.chromium = (callSubTestsOnMatchingSystems ["x86_64-linux"] tests/chromium.nix {}).stable or {}; - tests.cjdns = callTest tests/cjdns.nix {}; - tests.cloud-init = callTest tests/cloud-init.nix {}; - tests.codimd = callTest tests/codimd.nix {}; - tests.containers-ipv4 = callTest tests/containers-ipv4.nix {}; - tests.containers-ipv6 = callTest tests/containers-ipv6.nix {}; - tests.containers-bridge = callTest tests/containers-bridge.nix {}; - tests.containers-imperative = callTest tests/containers-imperative.nix {}; - tests.containers-extra_veth = callTest tests/containers-extra_veth.nix {}; - tests.containers-physical_interfaces = callTest tests/containers-physical_interfaces.nix {}; - tests.containers-restart_networking = callTest tests/containers-restart_networking.nix {}; - tests.containers-tmpfs = callTest tests/containers-tmpfs.nix {}; - tests.containers-hosts = callTest tests/containers-hosts.nix {}; - tests.containers-macvlans = callTest tests/containers-macvlans.nix {}; - tests.couchdb = callTest tests/couchdb.nix {}; - tests.deluge = callTest tests/deluge.nix {}; - tests.dhparams = callTest tests/dhparams.nix {}; - tests.docker = callTestOnMatchingSystems ["x86_64-linux"] tests/docker.nix {}; - tests.docker-tools = callTestOnMatchingSystems ["x86_64-linux"] tests/docker-tools.nix {}; - tests.docker-tools-overlay = callTestOnMatchingSystems ["x86_64-linux"] tests/docker-tools-overlay.nix {}; - tests.docker-edge = callTestOnMatchingSystems ["x86_64-linux"] tests/docker-edge.nix {}; - tests.docker-registry = callTest tests/docker-registry.nix {}; - tests.dovecot = callTest tests/dovecot.nix {}; - tests.dnscrypt-proxy = callTestOnMatchingSystems ["x86_64-linux"] tests/dnscrypt-proxy.nix {}; - tests.ecryptfs = callTest tests/ecryptfs.nix {}; - tests.etcd = callTestOnMatchingSystems ["x86_64-linux"] tests/etcd.nix {}; - tests.ec2-nixops = (callSubTestsOnMatchingSystems ["x86_64-linux"] tests/ec2.nix {}).boot-ec2-nixops or {}; - # ec2-config doesn't work in a sandbox as the simulated ec2 instance needs network access - #tests.ec2-config = (callSubTestsOnMatchingSystems ["x86_64-linux"] tests/ec2.nix {}).boot-ec2-config or {}; - tests.elk = callSubTestsOnMatchingSystems ["x86_64-linux"] tests/elk.nix {}; - tests.env = callTest tests/env.nix {}; - tests.ferm = callTest tests/ferm.nix {}; - tests.firefox = callTest tests/firefox.nix {}; - tests.flatpak = callTest tests/flatpak.nix {}; - tests.firewall = callTest tests/firewall.nix {}; - tests.fsck = callTest tests/fsck.nix {}; - tests.fwupd = callTest tests/fwupd.nix {}; - tests.gdk-pixbuf = callTest tests/gdk-pixbuf.nix {}; - #tests.gitlab = callTest tests/gitlab.nix {}; - tests.gitolite = callTest tests/gitolite.nix {}; - tests.gjs = callTest tests/gjs.nix {}; - tests.gocd-agent = callTest tests/gocd-agent.nix {}; - tests.gocd-server = callTest tests/gocd-server.nix {}; - tests.gnome3 = callTest tests/gnome3.nix {}; - tests.gnome3-gdm = callTest tests/gnome3-gdm.nix {}; - tests.grafana = callTest tests/grafana.nix {}; - tests.graphite = callTest tests/graphite.nix {}; - tests.hadoop.hdfs = callTestOnMatchingSystems [ "x86_64-linux" ] tests/hadoop/hdfs.nix {}; - tests.hadoop.yarn = callTestOnMatchingSystems [ "x86_64-linux" ] tests/hadoop/yarn.nix {}; - tests.hardened = callTest tests/hardened.nix { }; - tests.haproxy = callTest tests/haproxy.nix {}; - tests.hibernate = callTest tests/hibernate.nix {}; - tests.hitch = callTest tests/hitch {}; - tests.home-assistant = callTest tests/home-assistant.nix { }; - tests.hound = callTest tests/hound.nix {}; - tests.hocker-fetchdocker = callTest tests/hocker-fetchdocker {}; - tests.hydra = callTest tests/hydra {}; - tests.i3wm = callTest tests/i3wm.nix {}; - tests.iftop = callTest tests/iftop.nix {}; - tests.initrd-network-ssh = callTest tests/initrd-network-ssh {}; - tests.installer = callSubTests tests/installer.nix {}; - tests.influxdb = callTest tests/influxdb.nix {}; - tests.ipv6 = callTest tests/ipv6.nix {}; - tests.jenkins = callTest tests/jenkins.nix {}; - tests.ostree = callTest tests/ostree.nix {}; - tests.osquery = callTest tests/osquery.nix {}; - tests.plasma5 = callTest tests/plasma5.nix {}; - tests.plotinus = callTest tests/plotinus.nix {}; - tests.keymap = callSubTests tests/keymap.nix {}; - tests.initrdNetwork = callTest tests/initrd-network.nix {}; - tests.kafka = callSubTests tests/kafka.nix {}; - tests.kernel-latest = callTest tests/kernel-latest.nix {}; - tests.kernel-lts = callTest tests/kernel-lts.nix {}; - tests.kubernetes.dns = callSubTestsOnMatchingSystems ["x86_64-linux"] tests/kubernetes/dns.nix {}; - ## kubernetes.e2e should eventually replace kubernetes.rbac when it works - #tests.kubernetes.e2e = callSubTestsOnMatchingSystems ["x86_64-linux"] tests/kubernetes/e2e.nix {}; - tests.kubernetes.rbac = callSubTestsOnMatchingSystems ["x86_64-linux"] tests/kubernetes/rbac.nix {}; - tests.latestKernel.login = callTest tests/login.nix { latestKernel = true; }; - tests.ldap = callTest tests/ldap.nix {}; - #tests.lightdm = callTest tests/lightdm.nix {}; - tests.login = callTest tests/login.nix {}; - #tests.logstash = callTest tests/logstash.nix {}; - tests.mathics = callTest tests/mathics.nix {}; - tests.matrix-synapse = callTest tests/matrix-synapse.nix {}; - tests.memcached = callTest tests/memcached.nix {}; - tests.mesos = callTest tests/mesos.nix {}; - tests.misc = callTest tests/misc.nix {}; - tests.mongodb = callTest tests/mongodb.nix {}; - tests.mpd = callTest tests/mpd.nix {}; - tests.mumble = callTest tests/mumble.nix {}; - tests.munin = callTest tests/munin.nix {}; - tests.mutableUsers = callTest tests/mutable-users.nix {}; - tests.mysql = callTest tests/mysql.nix {}; - tests.mysqlBackup = callTest tests/mysql-backup.nix {}; - tests.mysqlReplication = callTest tests/mysql-replication.nix {}; - tests.nat.firewall = callTest tests/nat.nix { withFirewall = true; }; - tests.nat.firewall-conntrack = callTest tests/nat.nix { withFirewall = true; withConntrackHelpers = true; }; - tests.nat.standalone = callTest tests/nat.nix { withFirewall = false; }; - tests.netdata = callTest tests/netdata.nix { }; - tests.networking.networkd = callSubTests tests/networking.nix { networkd = true; }; - tests.networking.scripted = callSubTests tests/networking.nix { networkd = false; }; - tests.nextcloud = callSubTests tests/nextcloud { }; - # TODO: put in networking.nix after the test becomes more complete - tests.networkingProxy = callTest tests/networking-proxy.nix {}; - tests.nexus = callTest tests/nexus.nix { }; - tests.nfs3 = callTest tests/nfs.nix { version = 3; }; - tests.nfs4 = callTest tests/nfs.nix { version = 4; }; - tests.nginx = callTest tests/nginx.nix { }; - tests.nghttpx = callTest tests/nghttpx.nix { }; - tests.nix-ssh-serve = callTest tests/nix-ssh-serve.nix { }; - tests.novacomd = callTestOnMatchingSystems ["x86_64-linux"] tests/novacomd.nix { }; - tests.leaps = callTest tests/leaps.nix { }; - tests.nsd = callTest tests/nsd.nix {}; - tests.openssh = callTest tests/openssh.nix {}; - tests.openldap = callTest tests/openldap.nix {}; - tests.opensmtpd = callTest tests/opensmtpd.nix {}; - tests.owncloud = callTest tests/owncloud.nix {}; - tests.pam-oath-login = callTest tests/pam-oath-login.nix {}; - tests.peerflix = callTest tests/peerflix.nix {}; - tests.php-pcre = callTest tests/php-pcre.nix {}; - tests.postgresql = callSubTests tests/postgresql.nix {}; - tests.pgmanage = callTest tests/pgmanage.nix {}; - tests.postgis = callTest tests/postgis.nix {}; - tests.powerdns = callTest tests/powerdns.nix {}; - tests.pgjwt = callTest tests/pgjwt.nix {}; - tests.predictable-interface-names = callSubTests tests/predictable-interface-names.nix {}; - tests.printing = callTest tests/printing.nix {}; - tests.prometheus = callTest tests/prometheus.nix {}; - tests.prometheus-exporters = callTest tests/prometheus-exporters.nix {}; - tests.prosody = callTest tests/prosody.nix {}; - tests.proxy = callTest tests/proxy.nix {}; - tests.quagga = callTest tests/quagga.nix {}; - tests.quake3 = callTest tests/quake3.nix {}; - tests.rabbitmq = callTest tests/rabbitmq.nix {}; - tests.radicale = callTest tests/radicale.nix {}; - tests.redmine = callTest tests/redmine.nix {}; - tests.rspamd = callSubTests tests/rspamd.nix {}; - tests.rsyslogd = callSubTests tests/rsyslogd.nix {}; - tests.runInMachine = callTest tests/run-in-machine.nix {}; - tests.rxe = callTest tests/rxe.nix {}; - tests.samba = callTest tests/samba.nix {}; - tests.sddm = callSubTests tests/sddm.nix {}; - tests.simple = callTest tests/simple.nix {}; - tests.slim = callTest tests/slim.nix {}; - tests.slurm = callTest tests/slurm.nix {}; - tests.smokeping = callTest tests/smokeping.nix {}; - tests.snapper = callTest tests/snapper.nix {}; - #tests.statsd = callTest tests/statsd.nix {}; # statsd is broken: #45946 - tests.strongswan-swanctl = callTest tests/strongswan-swanctl.nix {}; - tests.sudo = callTest tests/sudo.nix {}; - tests.systemd = callTest tests/systemd.nix {}; - tests.switchTest = callTest tests/switch-test.nix {}; - tests.taskserver = callTest tests/taskserver.nix {}; - tests.tomcat = callTest tests/tomcat.nix {}; - tests.tor = callTest tests/tor.nix {}; - tests.transmission = callTest tests/transmission.nix {}; - tests.udisks2 = callTest tests/udisks2.nix {}; - tests.vault = callTest tests/vault.nix {}; - tests.virtualbox = callSubTestsOnMatchingSystems ["x86_64-linux"] tests/virtualbox.nix {}; - tests.wordpress = callTest tests/wordpress.nix {}; - tests.xautolock = callTest tests/xautolock.nix {}; - tests.xdg-desktop-portal = callTest tests/xdg-desktop-portal.nix {}; - tests.xfce = callTest tests/xfce.nix {}; - tests.xmonad = callTest tests/xmonad.nix {}; - tests.xrdp = callTest tests/xrdp.nix {}; - tests.xss-lock = callTest tests/xss-lock.nix {}; - tests.yabar = callTest tests/yabar.nix {}; - tests.zookeeper = callTest tests/zookeeper.nix {}; - tests.morty = callTest tests/morty.nix { }; - tests.bcachefs = callTest tests/bcachefs.nix { }; + tests = allTests; /* Build a bunch of typical closures so that Hydra can keep track of the evolution of closure sizes. */ @@ -468,7 +273,7 @@ in rec { { services.httpd.enable = true; services.httpd.adminAddr = "foo@example.org"; services.postgresql.enable = true; - services.postgresql.package = pkgs.postgresql93; + services.postgresql.package = pkgs.postgresql_9_3; environment.systemPackages = [ pkgs.php ]; }); }; diff --git a/nixos/tests/all-tests.nix b/nixos/tests/all-tests.nix new file mode 100644 index 0000000000000000000000000000000000000000..754a8ff20b26291d77a80a44a4c43f471a6ed5c7 --- /dev/null +++ b/nixos/tests/all-tests.nix @@ -0,0 +1,215 @@ +{ system, pkgs, callTest }: +# The return value of this function will be an attrset with arbitrary depth and +# the `anything` returned by callTest at its test leafs. +# The tests not supported by `system` will be replaced with `{}`, so that +# `passthru.tests` can contain links to those without breaking on architectures +# where said tests are unsupported. +# Example callTest that just extracts the derivation from the test: +# callTest = t: t.test; + +with pkgs.lib; + +let + discoverTests = val: + if !isAttrs val then val + else if hasAttr "test" val then callTest val + else mapAttrs (n: s: discoverTests s) val; + handleTest = path: args: + discoverTests (import path ({ inherit system pkgs; } // args)); + handleTestOn = systems: path: args: + if elem system systems then handleTest path args + else {}; +in +{ + acme = handleTestOn ["x86_64-linux"] ./acme.nix {}; + atd = handleTest ./atd.nix {}; + avahi = handleTest ./avahi.nix {}; + bcachefs = handleTestOn ["x86_64-linux"] ./bcachefs.nix {}; # linux-4.18.2018.10.12 is unsupported on aarch64 + beegfs = handleTestOn ["x86_64-linux"] ./beegfs.nix {}; # beegfs is unsupported on aarch64 + bind = handleTest ./bind.nix {}; + bittorrent = handleTest ./bittorrent.nix {}; + #blivet = handleTest ./blivet.nix {}; # broken since 2017-07024 + boot = handleTestOn ["x86_64-linux"] ./boot.nix {}; # syslinux is unsupported on aarch64 + boot-stage1 = handleTest ./boot-stage1.nix {}; + borgbackup = handleTest ./borgbackup.nix {}; + buildbot = handleTest ./buildbot.nix {}; + cadvisor = handleTestOn ["x86_64-linux"] ./cadvisor.nix {}; + ceph = handleTestOn ["x86_64-linux"] ./ceph.nix {}; + certmgr = handleTest ./certmgr.nix {}; + cfssl = handleTestOn ["x86_64-linux"] ./cfssl.nix {}; + chromium = (handleTestOn ["x86_64-linux"] ./chromium.nix {}).stable or {}; + cjdns = handleTest ./cjdns.nix {}; + cloud-init = handleTest ./cloud-init.nix {}; + codimd = handleTest ./codimd.nix {}; + containers-bridge = handleTest ./containers-bridge.nix {}; + containers-extra_veth = handleTest ./containers-extra_veth.nix {}; + containers-hosts = handleTest ./containers-hosts.nix {}; + containers-imperative = handleTest ./containers-imperative.nix {}; + containers-ipv4 = handleTest ./containers-ipv4.nix {}; + containers-ipv6 = handleTest ./containers-ipv6.nix {}; + containers-macvlans = handleTest ./containers-macvlans.nix {}; + containers-physical_interfaces = handleTest ./containers-physical_interfaces.nix {}; + containers-restart_networking = handleTest ./containers-restart_networking.nix {}; + containers-tmpfs = handleTest ./containers-tmpfs.nix {}; + #couchdb = handleTest ./couchdb.nix {}; # spidermonkey-1.8.5 is marked as broken + deluge = handleTest ./deluge.nix {}; + dhparams = handleTest ./dhparams.nix {}; + dnscrypt-proxy = handleTestOn ["x86_64-linux"] ./dnscrypt-proxy.nix {}; + docker = handleTestOn ["x86_64-linux"] ./docker.nix {}; + docker-edge = handleTestOn ["x86_64-linux"] ./docker-edge.nix {}; + docker-preloader = handleTestOn ["x86_64-linux"] ./docker-preloader.nix {}; + docker-registry = handleTest ./docker-registry.nix {}; + docker-tools = handleTestOn ["x86_64-linux"] ./docker-tools.nix {}; + docker-tools-overlay = handleTestOn ["x86_64-linux"] ./docker-tools-overlay.nix {}; + dovecot = handleTest ./dovecot.nix {}; + # ec2-config doesn't work in a sandbox as the simulated ec2 instance needs network access + #ec2-config = (handleTestOn ["x86_64-linux"] ./ec2.nix {}).boot-ec2-config or {}; + ec2-nixops = (handleTestOn ["x86_64-linux"] ./ec2.nix {}).boot-ec2-nixops or {}; + ecryptfs = handleTest ./ecryptfs.nix {}; + elk = handleTestOn ["x86_64-linux"] ./elk.nix {}; + env = handleTest ./env.nix {}; + etcd = handleTestOn ["x86_64-linux"] ./etcd.nix {}; + ferm = handleTest ./ferm.nix {}; + firefox = handleTest ./firefox.nix {}; + firewall = handleTest ./firewall.nix {}; + flatpak = handleTest ./flatpak.nix {}; + fsck = handleTest ./fsck.nix {}; + fwupd = handleTestOn ["x86_64-linux"] ./fwupd.nix {}; # libsmbios is unsupported on aarch64 + gdk-pixbuf = handleTest ./gdk-pixbuf.nix {}; + gitea = handleTest ./gitea.nix {}; + gitlab = handleTest ./gitlab.nix {}; + gitolite = handleTest ./gitolite.nix {}; + gjs = handleTest ./gjs.nix {}; + gnome3 = handleTestOn ["x86_64-linux"] ./gnome3.nix {}; # libsmbios is unsupported on aarch64 + gnome3-gdm = handleTestOn ["x86_64-linux"] ./gnome3-gdm.nix {}; # libsmbios is unsupported on aarch64 + gocd-agent = handleTest ./gocd-agent.nix {}; + gocd-server = handleTest ./gocd-server.nix {}; + grafana = handleTest ./grafana.nix {}; + graphite = handleTest ./graphite.nix {}; + hadoop.hdfs = handleTestOn [ "x86_64-linux" ] ./hadoop/hdfs.nix {}; + hadoop.yarn = handleTestOn [ "x86_64-linux" ] ./hadoop/yarn.nix {}; + handbrake = handleTestOn ["x86_64-linux"] ./handbrake.nix {}; + haproxy = handleTest ./haproxy.nix {}; + #hardened = handleTest ./hardened.nix {}; # broken due useSandbox = true + hibernate = handleTest ./hibernate.nix {}; + hitch = handleTest ./hitch {}; + hocker-fetchdocker = handleTest ./hocker-fetchdocker {}; + home-assistant = handleTest ./home-assistant.nix {}; + hound = handleTest ./hound.nix {}; + hydra = handleTest ./hydra {}; + i3wm = handleTest ./i3wm.nix {}; + iftop = handleTest ./iftop.nix {}; + incron = handleTest tests/incron.nix {}; + influxdb = handleTest ./influxdb.nix {}; + initrd-network-ssh = handleTest ./initrd-network-ssh {}; + initrdNetwork = handleTest ./initrd-network.nix {}; + installer = handleTest ./installer.nix {}; + ipv6 = handleTest ./ipv6.nix {}; + jenkins = handleTest ./jenkins.nix {}; + kafka = handleTest ./kafka.nix {}; + kernel-latest = handleTest ./kernel-latest.nix {}; + kernel-lts = handleTest ./kernel-lts.nix {}; + keymap = handleTest ./keymap.nix {}; + kubernetes.dns = handleTestOn ["x86_64-linux"] ./kubernetes/dns.nix {}; + # kubernetes.e2e should eventually replace kubernetes.rbac when it works + #kubernetes.e2e = handleTestOn ["x86_64-linux"] ./kubernetes/e2e.nix {}; + kubernetes.rbac = handleTestOn ["x86_64-linux"] ./kubernetes/rbac.nix {}; + latestKernel.login = handleTest ./login.nix { latestKernel = true; }; + ldap = handleTest ./ldap.nix {}; + leaps = handleTest ./leaps.nix {}; + #lightdm = handleTest ./lightdm.nix {}; + login = handleTest ./login.nix {}; + #logstash = handleTest ./logstash.nix {}; + mathics = handleTest ./mathics.nix {}; + matrix-synapse = handleTest ./matrix-synapse.nix {}; + memcached = handleTest ./memcached.nix {}; + mesos = handleTest ./mesos.nix {}; + misc = handleTest ./misc.nix {}; + mongodb = handleTest ./mongodb.nix {}; + morty = handleTest ./morty.nix {}; + mpd = handleTest ./mpd.nix {}; + mumble = handleTest ./mumble.nix {}; + munin = handleTest ./munin.nix {}; + mutableUsers = handleTest ./mutable-users.nix {}; + mysql = handleTest ./mysql.nix {}; + mysqlBackup = handleTest ./mysql-backup.nix {}; + mysqlReplication = handleTest ./mysql-replication.nix {}; + nat.firewall = handleTest ./nat.nix { withFirewall = true; }; + nat.firewall-conntrack = handleTest ./nat.nix { withFirewall = true; withConntrackHelpers = true; }; + nat.standalone = handleTest ./nat.nix { withFirewall = false; }; + netdata = handleTest ./netdata.nix {}; + networking.networkd = handleTest ./networking.nix { networkd = true; }; + networking.scripted = handleTest ./networking.nix { networkd = false; }; + # TODO: put in networking.nix after the test becomes more complete + networkingProxy = handleTest ./networking-proxy.nix {}; + nextcloud = handleTest ./nextcloud {}; + nexus = handleTest ./nexus.nix {}; + nfs3 = handleTest ./nfs.nix { version = 3; }; + nfs4 = handleTest ./nfs.nix { version = 4; }; + nghttpx = handleTest ./nghttpx.nix {}; + nginx = handleTest ./nginx.nix {}; + nix-ssh-serve = handleTest ./nix-ssh-serve.nix {}; + novacomd = handleTestOn ["x86_64-linux"] ./novacomd.nix {}; + nsd = handleTest ./nsd.nix {}; + openldap = handleTest ./openldap.nix {}; + opensmtpd = handleTest ./opensmtpd.nix {}; + openssh = handleTest ./openssh.nix {}; + osquery = handleTest ./osquery.nix {}; + ostree = handleTest ./ostree.nix {}; + owncloud = handleTest ./owncloud.nix {}; + pam-oath-login = handleTest ./pam-oath-login.nix {}; + peerflix = handleTest ./peerflix.nix {}; + pgjwt = handleTest ./pgjwt.nix {}; + pgmanage = handleTest ./pgmanage.nix {}; + php-pcre = handleTest ./php-pcre.nix {}; + plasma5 = handleTest ./plasma5.nix {}; + plotinus = handleTest ./plotinus.nix {}; + postgis = handleTest ./postgis.nix {}; + postgresql = handleTest ./postgresql.nix {}; + powerdns = handleTest ./powerdns.nix {}; + predictable-interface-names = handleTest ./predictable-interface-names.nix {}; + printing = handleTest ./printing.nix {}; + prometheus = handleTest ./prometheus.nix {}; + prometheus-exporters = handleTest ./prometheus-exporters.nix {}; + prosody = handleTest ./prosody.nix {}; + proxy = handleTest ./proxy.nix {}; + quagga = handleTest ./quagga.nix {}; + quake3 = handleTest ./quake3.nix {}; + rabbitmq = handleTest ./rabbitmq.nix {}; + radicale = handleTest ./radicale.nix {}; + redmine = handleTest ./redmine.nix {}; + rspamd = handleTest ./rspamd.nix {}; + rsyslogd = handleTest ./rsyslogd.nix {}; + runInMachine = handleTest ./run-in-machine.nix {}; + rxe = handleTest ./rxe.nix {}; + samba = handleTest ./samba.nix {}; + sddm = handleTest ./sddm.nix {}; + simple = handleTest ./simple.nix {}; + slim = handleTest ./slim.nix {}; + slurm = handleTest ./slurm.nix {}; + smokeping = handleTest ./smokeping.nix {}; + snapper = handleTest ./snapper.nix {}; + solr = handleTest ./solr.nix {}; + #statsd = handleTest ./statsd.nix {}; # statsd is broken: #45946 + strongswan-swanctl = handleTest ./strongswan-swanctl.nix {}; + sudo = handleTest ./sudo.nix {}; + switchTest = handleTest ./switch-test.nix {}; + systemd = handleTest ./systemd.nix {}; + taskserver = handleTest ./taskserver.nix {}; + tomcat = handleTest ./tomcat.nix {}; + tor = handleTest ./tor.nix {}; + transmission = handleTest ./transmission.nix {}; + udisks2 = handleTest ./udisks2.nix {}; + upnp = handleTest ./upnp.nix {}; + vault = handleTest ./vault.nix {}; + virtualbox = handleTestOn ["x86_64-linux"] ./virtualbox.nix {}; + wordpress = handleTest ./wordpress.nix {}; + xautolock = handleTest ./xautolock.nix {}; + xdg-desktop-portal = handleTest ./xdg-desktop-portal.nix {}; + xfce = handleTest ./xfce.nix {}; + xmonad = handleTest ./xmonad.nix {}; + xrdp = handleTest ./xrdp.nix {}; + xss-lock = handleTest ./xss-lock.nix {}; + yabar = handleTest ./yabar.nix {}; + zookeeper = handleTest ./zookeeper.nix {}; +} diff --git a/nixos/tests/boot.nix b/nixos/tests/boot.nix index 301d9d0f817f84fb760844c6682aeb50f7cf1b4d..c9bb1e77c6d030f7a99f02977cd663918058671f 100644 --- a/nixos/tests/boot.nix +++ b/nixos/tests/boot.nix @@ -1,6 +1,9 @@ -{ system ? builtins.currentSystem }: +{ system ? builtins.currentSystem, + config ? {}, + pkgs ? import ../.. { inherit system config; } +}: -with import ../lib/testing.nix { inherit system; }; +with import ../lib/testing.nix { inherit system pkgs; }; with pkgs.lib; let diff --git a/nixos/tests/buildbot.nix b/nixos/tests/buildbot.nix index 399fd39005e25b0442ca887d7752b773b78cba06..210ad8e91df7b09de916c9d83588d5138391ba88 100644 --- a/nixos/tests/buildbot.nix +++ b/nixos/tests/buildbot.nix @@ -1,6 +1,9 @@ -{ system ? builtins.currentSystem }: +{ system ? builtins.currentSystem, + config ? {}, + pkgs ? import ../.. { inherit system config; } +}: -with import ../lib/testing.nix { inherit system; }; +with import ../lib/testing.nix { inherit system pkgs; }; let # Test ensures buildbot master comes up correctly and workers can connect diff --git a/nixos/tests/ceph.nix b/nixos/tests/ceph.nix index dd45f0157b01a93e766ec41e77ca37fc0ecf7d75..7408029c460e32ac666ef72b69eb50e114c1282b 100644 --- a/nixos/tests/ceph.nix +++ b/nixos/tests/ceph.nix @@ -10,9 +10,8 @@ import ./make-test.nix ({pkgs, ...}: rec { emptyDiskImages = [ 20480 20480 ]; vlans = [ 1 ]; }; - + networking = { - firewall.allowPing = true; useDHCP = false; interfaces.eth1.ipv4.addresses = pkgs.lib.mkOverride 0 [ { address = "192.168.1.1"; prefixLength = 24; } @@ -54,7 +53,7 @@ import ./make-test.nix ({pkgs, ...}: rec { }; }; }; - + testScript = { ... }: '' startAll; @@ -83,7 +82,7 @@ import ./make-test.nix ({pkgs, ...}: rec { # Can't check ceph status until a mon is up $aio->succeed("ceph -s | grep 'mon: 1 daemons'"); - + # Start the ceph-mgr daemon, it has no deps and hardly any setup $aio->mustSucceed( "ceph auth get-or-create mgr.aio mon 'allow profile mgr' osd 'allow *' mds 'allow *' > /var/lib/ceph/mgr/ceph-aio/keyring", diff --git a/nixos/tests/certmgr.nix b/nixos/tests/certmgr.nix index 8354c46b85f7ea756e576e71f67e828623b6b4f2..fe67833808ce4acbbbc160692a45340cb3bea4e3 100644 --- a/nixos/tests/certmgr.nix +++ b/nixos/tests/certmgr.nix @@ -1,6 +1,9 @@ -{ system ? builtins.currentSystem }: +{ system ? builtins.currentSystem, + config ? {}, + pkgs ? import ../.. { inherit system config; } +}: -with import ../lib/testing.nix { inherit system; }; +with import ../lib/testing.nix { inherit system pkgs; }; let mkSpec = { host, service ? null, action }: { inherit action; diff --git a/nixos/tests/chromium.nix b/nixos/tests/chromium.nix index c341e83961a8e9fd01519d67ea2a9b78c3650096..af5db2a3dbe1f1d57494fff99355ad3e458b7476 100644 --- a/nixos/tests/chromium.nix +++ b/nixos/tests/chromium.nix @@ -1,5 +1,6 @@ { system ? builtins.currentSystem -, pkgs ? import ../.. { inherit system; } +, config ? {} +, pkgs ? import ../.. { inherit system config; } , channelMap ? { stable = pkgs.chromium; beta = pkgs.chromiumBeta; @@ -7,13 +8,15 @@ } }: -with import ../lib/testing.nix { inherit system; }; +with import ../lib/testing.nix { inherit system pkgs; }; with pkgs.lib; mapAttrs (channel: chromiumPkg: makeTest rec { name = "chromium-${channel}"; - meta = with pkgs.stdenv.lib.maintainers; { - maintainers = [ aszlig ]; + meta = { + maintainers = with maintainers; [ aszlig ]; + # https://github.com/NixOS/hydra/issues/591#issuecomment-435125621 + inherit (chromiumPkg.meta) timeout; }; enableOCR = true; @@ -166,7 +169,7 @@ mapAttrs (channel: chromiumPkg: makeTest rec { my $clipboard = $machine->succeed(ru "${pkgs.xclip}/bin/xclip -o"); die "sandbox not working properly: $clipboard" - unless $clipboard =~ /namespace sandbox.*yes/mi + unless $clipboard =~ /layer 1 sandbox.*namespace/mi && $clipboard =~ /pid namespaces.*yes/mi && $clipboard =~ /network namespaces.*yes/mi && $clipboard =~ /seccomp.*sandbox.*yes/mi @@ -184,7 +187,7 @@ mapAttrs (channel: chromiumPkg: makeTest rec { my $clipboard = $machine->succeed(ru "${pkgs.xclip}/bin/xclip -o"); die "copying twice in a row does not work properly: $clipboard" - unless $clipboard =~ /namespace sandbox.*yes/mi + unless $clipboard =~ /layer 1 sandbox.*namespace/mi && $clipboard =~ /pid namespaces.*yes/mi && $clipboard =~ /network namespaces.*yes/mi && $clipboard =~ /seccomp.*sandbox.*yes/mi diff --git a/nixos/tests/cjdns.nix b/nixos/tests/cjdns.nix index ab5f8e0bcf3e542583167ab9a159956cf8911c4c..e03bb9882540c04d10752ac57ea8cd8232fa55cd 100644 --- a/nixos/tests/cjdns.nix +++ b/nixos/tests/cjdns.nix @@ -13,9 +13,6 @@ let # CJDNS output is incompatible with the XML log. systemd.services.cjdns.serviceConfig.StandardOutput = "null"; - #networking.firewall.enable = true; - networking.firewall.allowPing = true; - #networking.firewall.rejectPackets = true; }; in diff --git a/nixos/tests/cloud-init.nix b/nixos/tests/cloud-init.nix index 303e74086460f0a3dc2ea11efb56c29d153f47b8..516d29c9036be53cc1675b5f09daa630d15e4a27 100644 --- a/nixos/tests/cloud-init.nix +++ b/nixos/tests/cloud-init.nix @@ -1,6 +1,9 @@ -{ system ? builtins.currentSystem }: +{ system ? builtins.currentSystem, + config ? {}, + pkgs ? import ../.. { inherit system config; } +}: -with import ../lib/testing.nix { inherit system; }; +with import ../lib/testing.nix { inherit system pkgs; }; with pkgs.lib; let diff --git a/nixos/tests/containers-bridge.nix b/nixos/tests/containers-bridge.nix index bd8bd5dee9c88050067f7816235b4afbf817f397..777cf9a7e7f988465ebae0795bb59c21ba38af03 100644 --- a/nixos/tests/containers-bridge.nix +++ b/nixos/tests/containers-bridge.nix @@ -42,7 +42,6 @@ import ./make-test.nix ({ pkgs, ...} : { { services.httpd.enable = true; services.httpd.adminAddr = "foo@example.org"; networking.firewall.allowedTCPPorts = [ 80 ]; - networking.firewall.allowPing = true; }; }; diff --git a/nixos/tests/containers-extra_veth.nix b/nixos/tests/containers-extra_veth.nix index 8f874b3585dc4113e1c70a532fa1b617e3f3dc45..b4c48afe48bab47df1169941f243d1b0cc8f87bf 100644 --- a/nixos/tests/containers-extra_veth.nix +++ b/nixos/tests/containers-extra_veth.nix @@ -43,7 +43,6 @@ import ./make-test.nix ({ pkgs, ...} : { config = { networking.firewall.allowedTCPPorts = [ 80 ]; - networking.firewall.allowPing = true; }; }; diff --git a/nixos/tests/containers-ipv4.nix b/nixos/tests/containers-ipv4.nix index 4affe3d9d56dc34594757fd30a32ddf093ec51a0..5f83a33b1079ca37f6983a74f8fea4bd58296aa7 100644 --- a/nixos/tests/containers-ipv4.nix +++ b/nixos/tests/containers-ipv4.nix @@ -20,7 +20,6 @@ import ./make-test.nix ({ pkgs, ...} : { { services.httpd.enable = true; services.httpd.adminAddr = "foo@example.org"; networking.firewall.allowedTCPPorts = [ 80 ]; - networking.firewall.allowPing = true; system.stateVersion = "18.03"; }; }; diff --git a/nixos/tests/containers-ipv6.nix b/nixos/tests/containers-ipv6.nix index 7db389a18e72695444e6524c52db42ac900b568c..5866e51b731df0da82a6879a582b5897a1571aa0 100644 --- a/nixos/tests/containers-ipv6.nix +++ b/nixos/tests/containers-ipv6.nix @@ -25,7 +25,6 @@ import ./make-test.nix ({ pkgs, ...} : { { services.httpd.enable = true; services.httpd.adminAddr = "foo@example.org"; networking.firewall.allowedTCPPorts = [ 80 ]; - networking.firewall.allowPing = true; }; }; diff --git a/nixos/tests/containers-portforward.nix b/nixos/tests/containers-portforward.nix index be83f82445edc8338731f14ef4363f8be8d4fc54..d2dda926fc0ebba4946a4c43c3137c66ce86379e 100644 --- a/nixos/tests/containers-portforward.nix +++ b/nixos/tests/containers-portforward.nix @@ -28,7 +28,6 @@ import ./make-test.nix ({ pkgs, ...} : { { services.httpd.enable = true; services.httpd.adminAddr = "foo@example.org"; networking.firewall.allowedTCPPorts = [ 80 ]; - networking.firewall.allowPing = true; }; }; diff --git a/nixos/tests/containers-restart_networking.nix b/nixos/tests/containers-restart_networking.nix index aeb0a6e68e216063c5d8743f0854e52123cdbd04..0fb3b591e9f913435dc2ba86f65d5738f3242557 100644 --- a/nixos/tests/containers-restart_networking.nix +++ b/nixos/tests/containers-restart_networking.nix @@ -10,7 +10,6 @@ let hostBridge = "br0"; config = { networking.firewall.enable = false; - networking.firewall.allowPing = true; networking.interfaces.eth0.ipv4.addresses = [ { address = "192.168.1.122"; prefixLength = 24; } ]; diff --git a/nixos/tests/docker-preloader.nix b/nixos/tests/docker-preloader.nix new file mode 100644 index 0000000000000000000000000000000000000000..eeedec9a392ed261f3a61dec9f5c219e05930d64 --- /dev/null +++ b/nixos/tests/docker-preloader.nix @@ -0,0 +1,27 @@ +import ./make-test.nix ({ pkgs, ...} : { + name = "docker-preloader"; + meta = with pkgs.stdenv.lib.maintainers; { + maintainers = [ lewo ]; + }; + + nodes = { + docker = + { pkgs, ... }: + { + virtualisation.docker.enable = true; + virtualisation.dockerPreloader.images = [ pkgs.dockerTools.examples.nix pkgs.dockerTools.examples.bash ]; + + services.openssh.enable = true; + services.openssh.permitRootLogin = "yes"; + services.openssh.extraConfig = "PermitEmptyPasswords yes"; + users.extraUsers.root.password = ""; + }; + }; + testScript = '' + startAll; + + $docker->waitForUnit("sockets.target"); + $docker->succeed("docker run nix nix-store --version"); + $docker->succeed("docker run bash bash --version"); + ''; +}) diff --git a/nixos/tests/ec2.nix b/nixos/tests/ec2.nix index 8271747ccc631aa29e65c75897f2e5c4417d25de..ed6bf7da988caca25511b630e1631b0f86d7f0bc 100644 --- a/nixos/tests/ec2.nix +++ b/nixos/tests/ec2.nix @@ -1,6 +1,9 @@ -{ system ? builtins.currentSystem }: +{ system ? builtins.currentSystem, + config ? {}, + pkgs ? import ../.. { inherit system config; } +}: -with import ../lib/testing.nix { inherit system; }; +with import ../lib/testing.nix { inherit system pkgs; }; with pkgs.lib; let diff --git a/nixos/tests/elk.nix b/nixos/tests/elk.nix index 15be72b80bbad5d99518eaffd4150a48fdb409a9..d787ac97300570b5444ceffcaa0c1b252945109e 100644 --- a/nixos/tests/elk.nix +++ b/nixos/tests/elk.nix @@ -1,6 +1,12 @@ -{ system ? builtins.currentSystem, enableUnfree ? false }: -with import ../lib/testing.nix { inherit system; }; +{ system ? builtins.currentSystem, + config ? {}, + pkgs ? import ../.. { inherit system config; }, + enableUnfree ? false +}: + +with import ../lib/testing.nix { inherit system pkgs; }; with pkgs.lib; + let esUrl = "http://localhost:9200"; diff --git a/nixos/tests/gitea.nix b/nixos/tests/gitea.nix new file mode 100644 index 0000000000000000000000000000000000000000..35433499185217c3d7358b3dcdc4dad4fc1a3fad --- /dev/null +++ b/nixos/tests/gitea.nix @@ -0,0 +1,77 @@ +{ system ? builtins.currentSystem, + config ? {}, + pkgs ? import ../.. { inherit system config; } +}: + +with import ../lib/testing.nix { inherit system pkgs; }; +with pkgs.lib; + +{ + mysql = makeTest { + name = "gitea-mysql"; + meta.maintainers = [ maintainers.aanderse ]; + + machine = + { config, pkgs, ... }: + { services.mysql.enable = true; + services.mysql.package = pkgs.mariadb; + services.mysql.ensureDatabases = [ "gitea" ]; + services.mysql.ensureUsers = [ + { name = "gitea"; + ensurePermissions = { "gitea.*" = "ALL PRIVILEGES"; }; + } + ]; + + services.gitea.enable = true; + services.gitea.database.type = "mysql"; + services.gitea.database.socket = "/run/mysqld/mysqld.sock"; + }; + + testScript = '' + startAll; + + $machine->waitForUnit('gitea.service'); + $machine->waitForOpenPort('3000'); + $machine->succeed("curl --fail http://localhost:3000/"); + ''; + }; + + postgres = makeTest { + name = "gitea-postgres"; + meta.maintainers = [ maintainers.aanderse ]; + + machine = + { config, pkgs, ... }: + { + services.gitea.enable = true; + services.gitea.database.type = "postgres"; + services.gitea.database.password = "secret"; + }; + + testScript = '' + startAll; + + $machine->waitForUnit('gitea.service'); + $machine->waitForOpenPort('3000'); + $machine->succeed("curl --fail http://localhost:3000/"); + ''; + }; + + sqlite = makeTest { + name = "gitea-sqlite"; + meta.maintainers = [ maintainers.aanderse ]; + + machine = + { config, pkgs, ... }: + { services.gitea.enable = true; + }; + + testScript = '' + startAll; + + $machine->waitForUnit('gitea.service'); + $machine->waitForOpenPort('3000'); + $machine->succeed("curl --fail http://localhost:3000/"); + ''; + }; +} diff --git a/nixos/tests/gitlab.nix b/nixos/tests/gitlab.nix index 3af2cbcd098850b5799c85b2f76432fe45728b67..53675c375e3187ff1c356d234468f0656ffc461d 100644 --- a/nixos/tests/gitlab.nix +++ b/nixos/tests/gitlab.nix @@ -1,14 +1,18 @@ # This test runs gitlab and checks if it works -import ./make-test.nix ({ pkgs, ...} : { +import ./make-test.nix ({ pkgs, lib, ...} : with lib; { name = "gitlab"; meta = with pkgs.stdenv.lib.maintainers; { - maintainers = [ domenkozar offline ]; + maintainers = [ globin ]; }; nodes = { gitlab = { ... }: { - virtualisation.memorySize = 768; + virtualisation.memorySize = 4096; + systemd.services.gitlab.serviceConfig.Restart = mkForce "no"; + systemd.services.gitlab-workhorse.serviceConfig.Restart = mkForce "no"; + systemd.services.gitaly.serviceConfig.Restart = mkForce "no"; + systemd.services.gitlab-sidekiq.serviceConfig.Restart = mkForce "no"; services.nginx = { enable = true; @@ -19,10 +23,10 @@ import ./make-test.nix ({ pkgs, ...} : { }; }; - systemd.services.gitlab.serviceConfig.TimeoutStartSec = "10min"; services.gitlab = { enable = true; databasePassword = "dbPassword"; + initialRootPassword = "notproduction"; secrets = { secret = "secret"; otp = "otpsecret"; @@ -65,8 +69,12 @@ import ./make-test.nix ({ pkgs, ...} : { testScript = '' $gitlab->start(); + $gitlab->waitForUnit("gitaly.service"); + $gitlab->waitForUnit("gitlab-workhorse.service"); $gitlab->waitForUnit("gitlab.service"); $gitlab->waitForUnit("gitlab-sidekiq.service"); - $gitlab->waitUntilSucceeds("curl http://localhost:80/users/sign_in"); + $gitlab->waitForFile("/var/gitlab/state/tmp/sockets/gitlab.socket"); + $gitlab->waitUntilSucceeds("curl -sSf http://localhost/users/sign_in"); + $gitlab->succeed("${pkgs.sudo}/bin/sudo -u gitlab -H gitlab-rake gitlab:check 1>&2") ''; }) diff --git a/nixos/tests/handbrake.nix b/nixos/tests/handbrake.nix new file mode 100644 index 0000000000000000000000000000000000000000..ae87e1f69a7d3316c7fa60aef63c43b050f2e0e3 --- /dev/null +++ b/nixos/tests/handbrake.nix @@ -0,0 +1,25 @@ +import ./make-test.nix ({ pkgs, ... }: +let + # Download Big Buck Bunny example, licensed under CC Attribution 3.0. + testMkv = pkgs.fetchurl { + url = "https://github.com/Matroska-Org/matroska-test-files/blob/cf0792be144ac470c4b8052cfe19bb691993e3a2/test_files/test1.mkv?raw=true"; + sha256 = "1hfxbbgxwfkzv85pvpvx55a72qsd0hxjbm9hkl5r3590zw4s75h9"; + }; +in { + name = "handbrake"; + + meta = { + maintainers = with pkgs.stdenv.lib.maintainers; [ danieldk ]; + }; + + machine = { pkgs, ... }: { + environment.systemPackages = with pkgs; [ handbrake ]; + }; + + testScript = '' + # Test MP4 and MKV transcoding. Since this is a short clip, transcoding typically + # only takes a few seconds. + $machine->succeed("HandBrakeCLI -i ${testMkv} -o test.mp4 -e x264 -q 20 -B 160"); + $machine->succeed("HandBrakeCLI -i ${testMkv} -o test.mkv -e x264 -q 20 -B 160"); + ''; +}) diff --git a/nixos/tests/hydra/create-trivial-project.sh b/nixos/tests/hydra/create-trivial-project.sh index 3cca5665acc56bfc9b95b6af373320143e321ed3..39122c9b473a1a865d3c31ffb48a23e9173a7d7a 100755 --- a/nixos/tests/hydra/create-trivial-project.sh +++ b/nixos/tests/hydra/create-trivial-project.sh @@ -31,7 +31,8 @@ mycurl -X POST -d '@data.json' $URL/login -c hydra-cookie.txt cat >data.json <> /root/incron.log + ''; + + # ensure the directory to be monitored exists before incron is started + system.activationScripts.incronTest = '' + mkdir /test + ''; + }; + + testScript = '' + startAll; + + $machine->waitForUnit("multi-user.target"); + $machine->waitForUnit("incron.service"); + + $machine->succeed("test -d /test"); + # create some activity for incron to monitor + $machine->succeed("touch /test/file"); + $machine->succeed("echo foo >> /test/file"); + $machine->succeed("mv /test/file /root"); + $machine->succeed("mv /root/file /test"); + + $machine->sleep(1); + + # touch /test/file + $machine->succeed("grep '/test/file IN_CREATE' /root/incron.log"); + + # echo foo >> /test/file + $machine->succeed("grep '/test/file IN_MODIFY' /root/incron.log"); + $machine->succeed("grep '/test/file IN_CLOSE_WRITE' /root/incron.log"); + + # mv /test/file /root + $machine->succeed("grep '/test/file IN_MOVED_FROM' /root/incron.log"); + + # mv /root/file /test + $machine->succeed("grep '/test/file IN_MOVED_TO' /root/incron.log"); + + # ensure something unexpected is not present + $machine->fail("grep 'IN_OPEN' /root/incron.log"); + ''; +}) diff --git a/nixos/tests/installer.nix b/nixos/tests/installer.nix index 3f9fa0e6016c3199baae96f8860b6511500a0e2f..e03fc459cb879ff320db0140ecd238f5dc623173 100644 --- a/nixos/tests/installer.nix +++ b/nixos/tests/installer.nix @@ -1,6 +1,9 @@ -{ system ? builtins.currentSystem }: +{ system ? builtins.currentSystem, + config ? {}, + pkgs ? import ../.. { inherit system config; } +}: -with import ../lib/testing.nix { inherit system; }; +with import ../lib/testing.nix { inherit system pkgs; }; with pkgs.lib; let diff --git a/nixos/tests/kafka.nix b/nixos/tests/kafka.nix index c9fd74620efb1329deea892e6aeffc4b6d708239..a833e01f9f5ea0e622f1c34ae72caac51f4047f8 100644 --- a/nixos/tests/kafka.nix +++ b/nixos/tests/kafka.nix @@ -1,5 +1,9 @@ -{ system ? builtins.currentSystem }: -with import ../lib/testing.nix { inherit system; }; +{ system ? builtins.currentSystem, + config ? {}, + pkgs ? import ../.. { inherit system config; } +}: + +with import ../lib/testing.nix { inherit system pkgs; }; with pkgs.lib; let diff --git a/nixos/tests/keymap.nix b/nixos/tests/keymap.nix index be880388314c17e945cea4c7ed3c641b46ab95fd..b19da251119b7b52063f96a665bac2457b6e46d0 100644 --- a/nixos/tests/keymap.nix +++ b/nixos/tests/keymap.nix @@ -1,6 +1,9 @@ -{ system ? builtins.currentSystem }: +{ system ? builtins.currentSystem, + config ? {}, + pkgs ? import ../.. { inherit system config; } +}: -with import ../lib/testing.nix { inherit system; }; +with import ../lib/testing.nix { inherit system pkgs; }; let readyFile = "/tmp/readerReady"; diff --git a/nixos/tests/kubernetes/base.nix b/nixos/tests/kubernetes/base.nix index e4bc5b326d345101aa38613cb59634c7aa99ec73..b77da3414b34f6487d3ea948d54fd41f211b7ef4 100644 --- a/nixos/tests/kubernetes/base.nix +++ b/nixos/tests/kubernetes/base.nix @@ -1,6 +1,9 @@ -{ system ? builtins.currentSystem }: +{ system ? builtins.currentSystem, + config ? {}, + pkgs ? import ../.. { inherit system config; } +}: -with import ../../lib/testing.nix { inherit system; }; +with import ../../lib/testing.nix { inherit system pkgs; }; with pkgs.lib; let diff --git a/nixos/tests/kubernetes/dns.nix b/nixos/tests/kubernetes/dns.nix index 30e1acd255a0873997f8d00512b6f54c5a0d7615..f25ea5b9ed841cd368a7209e4dd6a8b8e1a1b871 100644 --- a/nixos/tests/kubernetes/dns.nix +++ b/nixos/tests/kubernetes/dns.nix @@ -87,7 +87,7 @@ let # check if pods are running $machine1->waitUntilSucceeds("kubectl get pod redis | grep Running"); $machine1->waitUntilSucceeds("kubectl get pod probe | grep Running"); - $machine1->waitUntilSucceeds("kubectl get pods -n kube-system | grep 'kube-dns.*3/3'"); + $machine1->waitUntilSucceeds("kubectl get pods -n kube-system | grep 'coredns.*1/1'"); # check dns on host (dnsmasq) $machine1->succeed("host redis.default.svc.cluster.local"); @@ -111,7 +111,7 @@ let # check if pods are running $machine1->waitUntilSucceeds("kubectl get pod redis | grep Running"); $machine1->waitUntilSucceeds("kubectl get pod probe | grep Running"); - $machine1->waitUntilSucceeds("kubectl get pods -n kube-system | grep 'kube-dns.*3/3'"); + $machine1->waitUntilSucceeds("kubectl get pods -n kube-system | grep 'coredns.*1/1'"); # check dns on hosts (dnsmasq) $machine1->succeed("host redis.default.svc.cluster.local"); diff --git a/nixos/tests/make-test.nix b/nixos/tests/make-test.nix index ee4ba310ad50e9ba78684fe0e45117de48f70308..cee5da93454a18d5135b1f9c3ce2219c16241598 100644 --- a/nixos/tests/make-test.nix +++ b/nixos/tests/make-test.nix @@ -1,5 +1,9 @@ -f: { system ? builtins.currentSystem, ... } @ args: +f: { + system ? builtins.currentSystem, + pkgs ? import ../.. { inherit system; config = {}; }, + ... +} @ args: -with import ../lib/testing.nix { inherit system; }; +with import ../lib/testing.nix { inherit system pkgs; }; makeTest (if pkgs.lib.isFunction f then f (args // { inherit pkgs; inherit (pkgs) lib; }) else f) diff --git a/nixos/tests/nat.nix b/nixos/tests/nat.nix index 9c280fe8b5b6671049010713df628186240c2ab9..04b4f0f045f0d31e4461eb19377bc8d5e10d9226 100644 --- a/nixos/tests/nat.nix +++ b/nixos/tests/nat.nix @@ -11,7 +11,6 @@ import ./make-test.nix ({ pkgs, lib, withFirewall, withConntrackHelpers ? false, lib.mkMerge [ { virtualisation.vlans = [ 2 1 ]; networking.firewall.enable = withFirewall; - networking.firewall.allowPing = true; networking.nat.internalIPs = [ "192.168.1.0/24" ]; networking.nat.externalInterface = "eth1"; } @@ -33,7 +32,6 @@ import ./make-test.nix ({ pkgs, lib, withFirewall, withConntrackHelpers ? false, { pkgs, nodes, ... }: lib.mkMerge [ { virtualisation.vlans = [ 1 ]; - networking.firewall.allowPing = true; networking.defaultGateway = (pkgs.lib.head nodes.router.config.networking.interfaces.eth2.ipv4.addresses).address; } diff --git a/nixos/tests/networking.nix b/nixos/tests/networking.nix index 87a8c4c0e1961f020cefaa560bc857af419cc403..e689eadf1dd80d54cd2b2340752c4601c897f5a9 100644 --- a/nixos/tests/networking.nix +++ b/nixos/tests/networking.nix @@ -1,8 +1,10 @@ { system ? builtins.currentSystem +, config ? {} +, pkgs ? import ../.. { inherit system config; } # bool: whether to use networkd in the tests , networkd }: -with import ../lib/testing.nix { inherit system; }; +with import ../lib/testing.nix { inherit system pkgs; }; with pkgs.lib; let @@ -17,7 +19,6 @@ let networking = { useDHCP = false; useNetworkd = networkd; - firewall.allowPing = true; firewall.checkReversePath = true; firewall.allowedUDPPorts = [ 547 ]; interfaces = mkOverride 0 (listToAttrs (flip map vlanIfs (n: @@ -86,7 +87,6 @@ let virtualisation.vlans = [ 1 2 ]; networking = { useNetworkd = networkd; - firewall.allowPing = true; useDHCP = false; defaultGateway = "192.168.1.1"; interfaces.eth1.ipv4.addresses = mkOverride 0 [ @@ -139,7 +139,6 @@ let virtualisation.vlans = [ 1 2 ]; networking = { useNetworkd = networkd; - firewall.allowPing = true; useDHCP = true; interfaces.eth1 = { ipv4.addresses = mkOverride 0 [ ]; @@ -194,7 +193,6 @@ let virtualisation.vlans = [ 1 2 ]; networking = { useNetworkd = networkd; - firewall.allowPing = true; useDHCP = false; interfaces.eth1 = { ipv4.addresses = mkOverride 0 [ ]; @@ -234,7 +232,6 @@ let virtualisation.vlans = [ 1 2 ]; networking = { useNetworkd = networkd; - firewall.allowPing = true; useDHCP = false; bonds.bond = { interfaces = [ "eth1" "eth2" ]; @@ -271,7 +268,6 @@ let virtualisation.vlans = [ vlan ]; networking = { useNetworkd = networkd; - firewall.allowPing = true; useDHCP = false; interfaces.eth1.ipv4.addresses = mkOverride 0 [ { inherit address; prefixLength = 24; } ]; @@ -285,7 +281,6 @@ let virtualisation.vlans = [ 1 2 ]; networking = { useNetworkd = networkd; - firewall.allowPing = true; useDHCP = false; bridges.bridge.interfaces = [ "eth1" "eth2" ]; interfaces.eth1.ipv4.addresses = mkOverride 0 [ ]; @@ -329,7 +324,6 @@ let # reverse path filtering rules for the macvlan interface seem # to be incorrect, causing the test to fail. Disable temporarily. firewall.checkReversePath = false; - firewall.allowPing = true; useDHCP = true; macvlans.macvlan.interface = "eth1"; interfaces.eth1.ipv4.addresses = mkOverride 0 [ ]; @@ -415,7 +409,6 @@ let #virtualisation.vlans = [ 1 ]; networking = { useNetworkd = networkd; - firewall.allowPing = true; useDHCP = false; vlans.vlan = { id = 1; diff --git a/nixos/tests/nextcloud/default.nix b/nixos/tests/nextcloud/default.nix index 66da6794b961d8135acab1275bcbac36c47ae5bc..e4c7a70606cf869338229abbc3d24c105e90c6f2 100644 --- a/nixos/tests/nextcloud/default.nix +++ b/nixos/tests/nextcloud/default.nix @@ -1,6 +1,9 @@ -{ system ? builtins.currentSystem }: +{ system ? builtins.currentSystem, + config ? {}, + pkgs ? import ../../.. { inherit system config; } +}: { - basic = import ./basic.nix { inherit system; }; - with-postgresql-and-redis = import ./with-postgresql-and-redis.nix { inherit system; }; - with-mysql-and-memcached = import ./with-mysql-and-memcached.nix { inherit system; }; + basic = import ./basic.nix { inherit system pkgs; }; + with-postgresql-and-redis = import ./with-postgresql-and-redis.nix { inherit system pkgs; }; + with-mysql-and-memcached = import ./with-mysql-and-memcached.nix { inherit system pkgs; }; } diff --git a/nixos/tests/opensmtpd.nix b/nixos/tests/opensmtpd.nix index 4d3479168f70067719445b982827db9996875eae..883ad760494127c73b6d45f7ec716fbeb328d1aa 100644 --- a/nixos/tests/opensmtpd.nix +++ b/nixos/tests/opensmtpd.nix @@ -120,4 +120,6 @@ import ./make-test.nix { $smtp2->waitUntilFails('smtpctl show queue | egrep .'); $client->succeed('check-mail-landed >&2'); ''; + + meta.timeout = 30; } diff --git a/nixos/tests/postgis.nix b/nixos/tests/postgis.nix index f8b63c5b6a27bf3203e6e981040f20d24e577e10..49be0672a8e53e3b1fd2e079f07cb8375434bd3a 100644 --- a/nixos/tests/postgis.nix +++ b/nixos/tests/postgis.nix @@ -9,7 +9,7 @@ import ./make-test.nix ({ pkgs, ...} : { { pkgs, ... }: { - services.postgresql = let mypg = pkgs.postgresql100; in { + services.postgresql = let mypg = pkgs.postgresql_11; in { enable = true; package = mypg; extraPlugins = [ (pkgs.postgis.override { postgresql = mypg; }) ]; diff --git a/nixos/tests/postgresql.nix b/nixos/tests/postgresql.nix index f1f09277f342a5a693fa2f1fa96e4292d2617004..1d434b62a5cb5a9da250f07de948bde46d80e3c4 100644 --- a/nixos/tests/postgresql.nix +++ b/nixos/tests/postgresql.nix @@ -1,6 +1,11 @@ -{ system ? builtins.currentSystem }: -with import ../lib/testing.nix { inherit system; }; +{ system ? builtins.currentSystem, + config ? {}, + pkgs ? import ../.. { inherit system config; } +}: + +with import ../lib/testing.nix { inherit system pkgs; }; with pkgs.lib; + let postgresql-versions = pkgs.callPackages ../../pkgs/servers/sql/postgresql { }; test-sql = pkgs.writeText "postgresql-test" '' @@ -53,6 +58,7 @@ let # Check backup service $machine->succeed("systemctl start postgresqlBackup-postgres.service"); $machine->succeed("zcat /var/backup/postgresql/postgres.sql.gz | grep 'ok'"); + $machine->succeed("stat -c '%a' /var/backup/postgresql/postgres.sql.gz | grep 600"); $machine->shutdown; ''; diff --git a/nixos/tests/predictable-interface-names.nix b/nixos/tests/predictable-interface-names.nix index 0d73436c1c3f5544816b4e3a8a502c789f2d4acb..8306abb8c42f9d76a62f27ef51e952c5cb423fb0 100644 --- a/nixos/tests/predictable-interface-names.nix +++ b/nixos/tests/predictable-interface-names.nix @@ -1,7 +1,10 @@ -{ system ? builtins.currentSystem }: +{ system ? builtins.currentSystem, + config ? {}, + pkgs ? import ../.. { inherit system config; } +}: let - inherit (import ../lib/testing.nix { inherit system; }) makeTest pkgs; + inherit (import ../lib/testing.nix { inherit system pkgs; }) makeTest; in pkgs.lib.listToAttrs (pkgs.lib.crossLists (predictable: withNetworkd: { name = pkgs.lib.optionalString (!predictable) "un" + "predictable" + pkgs.lib.optionalString withNetworkd "Networkd"; diff --git a/nixos/tests/quagga.nix b/nixos/tests/quagga.nix index 0ff14a21584a443c0534f59dd9fa491c38f0a224..6aee7ea57f038b9801132ba939765dd510cdd634 100644 --- a/nixos/tests/quagga.nix +++ b/nixos/tests/quagga.nix @@ -66,7 +66,6 @@ import ./make-test.nix ({ pkgs, ... }: virtualisation.vlans = [ 3 ]; networking.defaultGateway = ifAddr nodes.router2 "eth1"; networking.firewall.allowedTCPPorts = [ 80 ]; - networking.firewall.allowPing = true; services.httpd.enable = true; services.httpd.adminAddr = "foo@example.com"; }; diff --git a/nixos/tests/rspamd.nix b/nixos/tests/rspamd.nix index a12622b6aa0b84bc7572afb5625a665997a11c21..e16a9e6ffbc6001135f15461be9b6ab1b1cb8ebd 100644 --- a/nixos/tests/rspamd.nix +++ b/nixos/tests/rspamd.nix @@ -1,6 +1,11 @@ -{ system ? builtins.currentSystem }: -with import ../lib/testing.nix { inherit system; }; +{ system ? builtins.currentSystem, + config ? {}, + pkgs ? import ../.. { inherit system config; } +}: + +with import ../lib/testing.nix { inherit system pkgs; }; with pkgs.lib; + let initMachine = '' startAll @@ -27,7 +32,9 @@ let $machine->succeed("id \"rspamd\" >/dev/null"); ${checkSocket "/run/rspamd/rspamd.sock" "rspamd" "rspamd" "660" } sleep 10; - $machine->log($machine->succeed("cat /etc/rspamd.conf")); + $machine->log($machine->succeed("cat /etc/rspamd/rspamd.conf")); + $machine->log($machine->succeed("grep 'CONFDIR/worker-controller.inc' /etc/rspamd/rspamd.conf")); + $machine->log($machine->succeed("grep 'CONFDIR/worker-normal.inc' /etc/rspamd/rspamd.conf")); $machine->log($machine->succeed("systemctl cat rspamd.service")); $machine->log($machine->succeed("curl http://localhost:11334/auth")); $machine->log($machine->succeed("curl http://127.0.0.1:11334/auth")); @@ -55,7 +62,9 @@ in $machine->waitForFile("/run/rspamd.sock"); ${checkSocket "/run/rspamd.sock" "root" "root" "600" } ${checkSocket "/run/rspamd-worker.sock" "root" "root" "666" } - $machine->log($machine->succeed("cat /etc/rspamd.conf")); + $machine->log($machine->succeed("cat /etc/rspamd/rspamd.conf")); + $machine->log($machine->succeed("grep 'CONFDIR/worker-controller.inc' /etc/rspamd/rspamd.conf")); + $machine->log($machine->succeed("grep 'CONFDIR/worker-normal.inc' /etc/rspamd/rspamd.conf")); $machine->log($machine->succeed("rspamc -h /run/rspamd-worker.sock stat")); $machine->log($machine->succeed("curl --unix-socket /run/rspamd-worker.sock http://localhost/ping")); ''; @@ -78,6 +87,15 @@ in owner = "root"; group = "root"; }]; + workers.controller2 = { + type = "controller"; + bindSockets = [ "0.0.0.0:11335" ]; + extraConfig = '' + static_dir = "''${WWWDIR}"; + secure_ip = null; + password = "verysecretpassword"; + ''; + }; }; }; @@ -86,9 +104,151 @@ in $machine->waitForFile("/run/rspamd.sock"); ${checkSocket "/run/rspamd.sock" "root" "root" "600" } ${checkSocket "/run/rspamd-worker.sock" "root" "root" "666" } - $machine->log($machine->succeed("cat /etc/rspamd.conf")); + $machine->log($machine->succeed("cat /etc/rspamd/rspamd.conf")); + $machine->log($machine->succeed("grep 'CONFDIR/worker-controller.inc' /etc/rspamd/rspamd.conf")); + $machine->log($machine->succeed("grep 'CONFDIR/worker-normal.inc' /etc/rspamd/rspamd.conf")); + $machine->log($machine->succeed("grep 'LOCAL_CONFDIR/override.d/worker-controller2.inc' /etc/rspamd/rspamd.conf")); + $machine->log($machine->succeed("grep 'verysecretpassword' /etc/rspamd/override.d/worker-controller2.inc")); + $machine->waitUntilSucceeds("journalctl -u rspamd | grep -i 'starting controller process' >&2"); $machine->log($machine->succeed("rspamc -h /run/rspamd-worker.sock stat")); $machine->log($machine->succeed("curl --unix-socket /run/rspamd-worker.sock http://localhost/ping")); + $machine->log($machine->succeed("curl http://localhost:11335/ping")); + ''; + }; + customLuaRules = makeTest { + name = "rspamd-custom-lua-rules"; + machine = { + environment.etc."tests/no-muh.eml".text = '' + From: Sheep1 + To: Sheep2 + Subject: Evil cows + + I find cows to be evil don't you? + ''; + environment.etc."tests/muh.eml".text = '' + From: Cow + To: Sheep2 + Subject: Evil cows + + Cows are majestic creatures don't Muh agree? + ''; + services.rspamd = { + enable = true; + locals = { + "antivirus.conf" = mkIf false { text = '' + clamav { + action = "reject"; + symbol = "CLAM_VIRUS"; + type = "clamav"; + log_clean = true; + servers = "/run/clamav/clamd.ctl"; + } + '';}; + "redis.conf" = { + enable = false; + text = '' + servers = "127.0.0.1"; + ''; + }; + "groups.conf".text = '' + group "cows" { + symbol { + NO_MUH = { + weight = 1.0; + description = "Mails should not muh"; + } + } + } + ''; + }; + localLuaRules = pkgs.writeText "rspamd.local.lua" '' + local rspamd_logger = require "rspamd_logger" + rspamd_config.NO_MUH = { + callback = function (task) + local parts = task:get_text_parts() + if parts then + for _,part in ipairs(parts) do + local content = tostring(part:get_content()) + rspamd_logger.infox(rspamd_config, 'Found content %s', content) + local found = string.find(content, "Muh"); + rspamd_logger.infox(rspamd_config, 'Found muh %s', tostring(found)) + if found then + return true + end + end + end + return false + end, + score = 5.0, + description = 'Allow no cows', + group = "cows", + } + rspamd_logger.infox(rspamd_config, 'Work dammit!!!') + ''; + }; + }; + testScript = '' + ${initMachine} + $machine->waitForOpenPort(11334); + $machine->log($machine->succeed("cat /etc/rspamd/rspamd.conf")); + $machine->log($machine->succeed("cat /etc/rspamd/rspamd.local.lua")); + $machine->log($machine->succeed("cat /etc/rspamd/local.d/groups.conf")); + # Verify that redis.conf was not written + $machine->fail("cat /etc/rspamd/local.d/redis.conf >&2"); + # Verify that antivirus.conf was not written + $machine->fail("cat /etc/rspamd/local.d/antivirus.conf >&2"); + ${checkSocket "/run/rspamd/rspamd.sock" "rspamd" "rspamd" "660" } + $machine->log($machine->succeed("curl --unix-socket /run/rspamd/rspamd.sock http://localhost/ping")); + $machine->log($machine->succeed("rspamc -h 127.0.0.1:11334 stat")); + $machine->log($machine->succeed("cat /etc/tests/no-muh.eml | rspamc -h 127.0.0.1:11334")); + $machine->log($machine->succeed("cat /etc/tests/muh.eml | rspamc -h 127.0.0.1:11334 symbols")); + $machine->waitUntilSucceeds("journalctl -u rspamd | grep -i muh >&2"); + $machine->log($machine->fail("cat /etc/tests/no-muh.eml | rspamc -h 127.0.0.1:11334 symbols | grep NO_MUH")); + $machine->log($machine->succeed("cat /etc/tests/muh.eml | rspamc -h 127.0.0.1:11334 symbols | grep NO_MUH")); + ''; + }; + postfixIntegration = makeTest { + name = "rspamd-postfix-integration"; + machine = { + environment.systemPackages = with pkgs; [ msmtp ]; + environment.etc."tests/gtube.eml".text = '' + From: Sheep1 + To: Sheep2 + Subject: Evil cows + + I find cows to be evil don't you? + + XJS*C4JDBQADN1.NSBN3*2IDNEN*GTUBE-STANDARD-ANTI-UBE-TEST-EMAIL*C.34X + ''; + environment.etc."tests/example.eml".text = '' + From: Sheep1 + To: Sheep2 + Subject: Evil cows + + I find cows to be evil don't you? + ''; + users.users.tester.password = "test"; + services.postfix = { + enable = true; + destination = ["example.com"]; + }; + services.rspamd = { + enable = true; + postfix.enable = true; + }; + }; + testScript = '' + ${initMachine} + $machine->waitForOpenPort(11334); + $machine->waitForOpenPort(25); + ${checkSocket "/run/rspamd/rspamd-milter.sock" "rspamd" "postfix" "660" } + $machine->log($machine->succeed("rspamc -h 127.0.0.1:11334 stat")); + $machine->log($machine->succeed("msmtp --host=localhost -t --read-envelope-from < /etc/tests/example.eml")); + $machine->log($machine->fail("msmtp --host=localhost -t --read-envelope-from < /etc/tests/gtube.eml")); + + $machine->waitUntilFails('[ "$(postqueue -p)" != "Mail queue is empty" ]'); + $machine->fail("journalctl -u postfix | grep -i error >&2"); + $machine->fail("journalctl -u postfix | grep -i warning >&2"); ''; }; } diff --git a/nixos/tests/rsyslogd.nix b/nixos/tests/rsyslogd.nix index 4836419f0c2f9b7579ad8999fb71230d77ed5904..f17e61814c5e9798f516f0dcb95a2c9e8effb32e 100644 --- a/nixos/tests/rsyslogd.nix +++ b/nixos/tests/rsyslogd.nix @@ -1,10 +1,15 @@ -{ system ? builtins.currentSystem }: +{ system ? builtins.currentSystem, + config ? {}, + pkgs ? import ../.. { inherit system config; } +}: + +with import ../lib/testing.nix { inherit system pkgs; }; +with pkgs.lib; -with import ../lib/testing.nix { inherit system; }; { test1 = makeTest { name = "rsyslogd-test1"; - meta.maintainers = [ lib.maintainers.aanderse ]; + meta.maintainers = [ maintainers.aanderse ]; machine = { config, pkgs, ... }: @@ -21,7 +26,7 @@ with import ../lib/testing.nix { inherit system; }; test2 = makeTest { name = "rsyslogd-test2"; - meta.maintainers = [ lib.maintainers.aanderse ]; + meta.maintainers = [ maintainers.aanderse ]; machine = { config, pkgs, ... }: diff --git a/nixos/tests/run-in-machine.nix b/nixos/tests/run-in-machine.nix index bd90dc3080bd9b8e16c2632395d223fc3ab3f1e9..116f5dc28a62758702426a2f7f92dd47ae461661 100644 --- a/nixos/tests/run-in-machine.nix +++ b/nixos/tests/run-in-machine.nix @@ -1,6 +1,9 @@ -{ system ? builtins.currentSystem }: +{ system ? builtins.currentSystem, + config ? {}, + pkgs ? import ../.. { inherit system config; } +}: -with import ../lib/testing.nix { inherit system; }; +with import ../lib/testing.nix { inherit system pkgs; }; let output = runInMachine { diff --git a/nixos/tests/sddm.nix b/nixos/tests/sddm.nix index 7b9fdc0b3441555515f3e8849d617fd13d08cac2..678bcbeab20aed71de3ff431feb54bc1a596f003 100644 --- a/nixos/tests/sddm.nix +++ b/nixos/tests/sddm.nix @@ -1,6 +1,9 @@ -{ system ? builtins.currentSystem }: +{ system ? builtins.currentSystem, + config ? {}, + pkgs ? import ../.. { inherit system config; } +}: -with import ../lib/testing.nix { inherit system; }; +with import ../lib/testing.nix { inherit system pkgs; }; let inherit (pkgs) lib; diff --git a/nixos/tests/slurm.nix b/nixos/tests/slurm.nix index 60f44c3c8459c3b8f4f309f36d1fd6874a3984db..7f9c266cbff6b35f5ebc903980e133037cc90748 100644 --- a/nixos/tests/slurm.nix +++ b/nixos/tests/slurm.nix @@ -1,22 +1,27 @@ -import ./make-test.nix ({ ... }: -let mungekey = "mungeverryweakkeybuteasytointegratoinatest"; +import ./make-test.nix ({ lib, ... }: +let + mungekey = "mungeverryweakkeybuteasytointegratoinatest"; + slurmconfig = { controlMachine = "control"; - nodeName = '' - control - NodeName=node[1-3] CPUs=1 State=UNKNOWN + nodeName = [ "node[1-3] CPUs=1 State=UNKNOWN" ]; + partitionName = [ "debug Nodes=node[1-3] Default=YES MaxTime=INFINITE State=UP" ]; + extraConfig = '' + AccountingStorageHost=dbd + AccountingStorageType=accounting_storage/slurmdbd ''; - partitionName = "debug Nodes=node[1-3] Default=YES MaxTime=INFINITE State=UP"; }; in { name = "slurm"; + meta.maintainers = [ lib.maintainers.markuskowa ]; + nodes = let computeNode = { ...}: { - # TODO slrumd port and slurmctld port should be configurations and + # TODO slurmd port and slurmctld port should be configurations and # automatically allowed by the firewall. networking.firewall.enable = false; services.slurm = { @@ -43,6 +48,24 @@ in { } // slurmconfig; }; + dbd = + { pkgs, ... } : + { + networking.firewall.enable = false; + services.slurm.dbdserver = { + enable = true; + }; + services.mysql = { + enable = true; + package = pkgs.mysql; + ensureDatabases = [ "slurm_acct_db" ]; + ensureUsers = [{ + ensurePermissions = { "slurm_acct_db.*" = "ALL PRIVILEGES"; }; + name = "slurm"; + }]; + }; + }; + node1 = computeNode; node2 = computeNode; node3 = computeNode; @@ -54,7 +77,7 @@ in { startAll; # Set up authentification across the cluster - foreach my $node (($submit,$control,$node1,$node2,$node3)) + foreach my $node (($submit,$control,$dbd,$node1,$node2,$node3)) { $node->waitForUnit("default.target"); @@ -63,10 +86,22 @@ in { $node->succeed("chmod 0400 /etc/munge/munge.key"); $node->succeed("chown munge:munge /etc/munge/munge.key"); $node->succeed("systemctl restart munged"); - } + + $node->waitForUnit("munged"); + }; # Restart the services since they have probably failed due to the munge init # failure + subtest "can_start_slurmdbd", sub { + $dbd->succeed("systemctl restart slurmdbd"); + $dbd->waitForUnit("slurmdbd.service"); + }; + + # there needs to be an entry for the current + # cluster in the database before slurmctld is restarted + subtest "add_account", sub { + $control->succeed("sacctmgr -i add cluster default"); + }; subtest "can_start_slurmctld", sub { $control->succeed("systemctl restart slurmctld"); @@ -81,12 +116,17 @@ in { } }; - # Test that the cluster work and can distribute jobs; + # Test that the cluster works and can distribute jobs; subtest "run_distributed_command", sub { # Run `hostname` on 3 nodes of the partition (so on all the 3 nodes). # The output must contain the 3 different names $submit->succeed("srun -N 3 hostname | sort | uniq | wc -l | xargs test 3 -eq"); }; + + subtest "check_slurm_dbd", sub { + # find the srun job from above in the database + $submit->succeed("sacct | grep hostname"); + }; ''; }) diff --git a/nixos/tests/solr.nix b/nixos/tests/solr.nix new file mode 100644 index 0000000000000000000000000000000000000000..9ba3863411ea35a8297a3e7f98532eed0c638bfe --- /dev/null +++ b/nixos/tests/solr.nix @@ -0,0 +1,47 @@ +import ./make-test.nix ({ pkgs, lib, ... }: +{ + name = "solr"; + meta.maintainers = [ lib.maintainers.aanderse ]; + + machine = + { config, pkgs, ... }: + { + # Ensure the virtual machine has enough memory for Solr to avoid the following error: + # + # OpenJDK 64-Bit Server VM warning: + # INFO: os::commit_memory(0x00000000e8000000, 402653184, 0) + # failed; error='Cannot allocate memory' (errno=12) + # + # There is insufficient memory for the Java Runtime Environment to continue. + # Native memory allocation (mmap) failed to map 402653184 bytes for committing reserved memory. + virtualisation.memorySize = 2000; + + services.solr.enable = true; + }; + + testScript = '' + startAll; + + $machine->waitForUnit('solr.service'); + $machine->waitForOpenPort('8983'); + $machine->succeed('curl --fail http://localhost:8983/solr/'); + + # adapted from pkgs.solr/examples/films/README.txt + $machine->succeed('sudo -u solr solr create -c films'); + $machine->succeed(q(curl http://localhost:8983/solr/films/schema -X POST -H 'Content-type:application/json' --data-binary '{ + "add-field" : { + "name":"name", + "type":"text_general", + "multiValued":false, + "stored":true + }, + "add-field" : { + "name":"initial_release_date", + "type":"pdate", + "stored":true + } + }')) =~ /"status":0/ or die; + $machine->succeed('sudo -u solr post -c films ${pkgs.solr}/example/films/films.json'); + $machine->succeed('curl http://localhost:8983/solr/films/query?q=name:batman') =~ /"name":"Batman Begins"/ or die; + ''; +}) diff --git a/nixos/tests/virtualbox.nix b/nixos/tests/virtualbox.nix index ce84576edca170f17a0ac294bac3bead56f674e0..385e2939fe3bd008344a0cc7634eb6ce1ddae346 100644 --- a/nixos/tests/virtualbox.nix +++ b/nixos/tests/virtualbox.nix @@ -1,6 +1,11 @@ -{ system ? builtins.currentSystem, debug ? false, enableUnfree ? false }: - -with import ../lib/testing.nix { inherit system; }; +{ system ? builtins.currentSystem, + config ? {}, + pkgs ? import ../.. { inherit system config; }, + debug ? false, + enableUnfree ? false +}: + +with import ../lib/testing.nix { inherit system pkgs; }; with pkgs.lib; let diff --git a/nixos/tests/zfs.nix b/nixos/tests/zfs.nix index 1434038e90c197083de69d8592fe18f1f21a1ca2..d7a08268e984b6fc589b81fb48c27fddc14864de 100644 --- a/nixos/tests/zfs.nix +++ b/nixos/tests/zfs.nix @@ -1,6 +1,9 @@ -{ system ? builtins.currentSystem }: +{ system ? builtins.currentSystem, + config ? {}, + pkgs ? import ../.. { inherit system config; } +}: -with import ../lib/testing.nix { inherit system; }; +with import ../lib/testing.nix { inherit system pkgs; }; let diff --git a/pkgs/applications/altcoins/default.nix b/pkgs/applications/altcoins/default.nix index b24dbb8f90a578c4392ab64db08a9b19a3c75169..87945988321bd91375cd71bf941d52df7ac5e084 100644 --- a/pkgs/applications/altcoins/default.nix +++ b/pkgs/applications/altcoins/default.nix @@ -81,6 +81,10 @@ rec { sumokoin = callPackage ./sumokoin.nix { }; + wownero = callPackage ./wownero.nix { + inherit (darwin.apple_sdk.frameworks) CoreData IOKit PCSC; + }; + zcash = callPackage ./zcash { withGui = false; openssl = openssl_1_1; diff --git a/pkgs/applications/altcoins/wownero.nix b/pkgs/applications/altcoins/wownero.nix new file mode 100644 index 0000000000000000000000000000000000000000..4b62ba759f3617a88eeb344b3d76a83396c5d32e --- /dev/null +++ b/pkgs/applications/altcoins/wownero.nix @@ -0,0 +1,51 @@ +{ stdenv, fetchFromGitHub, cmake, pkgconfig, git +, boost, miniupnpc, openssl, unbound, cppzmq +, zeromq, pcsclite, readline, libsodium +, CoreData, IOKit, PCSC +}: + +assert stdenv.isDarwin -> IOKit != null; + +with stdenv.lib; + +stdenv.mkDerivation rec { + name = "wownero-${version}"; + + version = "0.4.0.0"; + src = fetchFromGitHub { + owner = "wownero"; + repo = "wownero"; + fetchSubmodules = true; + rev = "v${version}"; + sha256 = "1z5fpl4gwys4v8ffrymlzwrbnrbg73x553a9lxwny7ba8yg2k14p"; + }; + + nativeBuildInputs = [ cmake pkgconfig git ]; + + buildInputs = [ + boost miniupnpc openssl unbound + cppzmq zeromq pcsclite readline libsodium + ] ++ optionals stdenv.isDarwin [ IOKit CoreData PCSC ]; + + cmakeFlags = [ + "-DReadline_ROOT_DIR=${readline.dev}" + "-DMANUAL_SUBMODULES=ON" + ] ++ optional stdenv.isDarwin "-DBoost_USE_MULTITHREADED=OFF"; + + hardeningDisable = [ "fortify" ]; + + meta = { + description = "Wownero is a fork of the cryptocurrency Monero with primary alterations"; + longDescription = '' + Wownero’s emission is capped and supply is finite. Wownero is a fairly + launched coin with no premine. It’s not a fork of another blockchain. With + its own genesis block there is no degradation of privacy caused by ring + signatures using different participants for the same transaction outputs. + Unlike opposing forks. + ''; + homepage = http://wownero.org/; + license = licenses.bsd3; + platforms = platforms.all; + maintainers = with maintainers; [ fuwa ]; + }; +} diff --git a/pkgs/applications/audio/avldrums-lv2/default.nix b/pkgs/applications/audio/avldrums-lv2/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..40fb0c6d9e15349a2fbf39df26c73a11487c0b9d --- /dev/null +++ b/pkgs/applications/audio/avldrums-lv2/default.nix @@ -0,0 +1,30 @@ +{ stdenv, fetchFromGitHub, pkgconfig, pango, cairo, libGLU, lv2 }: + +stdenv.mkDerivation rec { + name = "${pname}-${version}"; + pname = "avldrums.lv2"; + version = "0.3.0"; + + src = fetchFromGitHub { + owner = "x42"; + repo = pname; + rev = "v${version}"; + sha256 = "0w51gdshq2i5bix2x5l3g3gnycy84nlzf5sj0jkrw0zrnbk6ghwg"; + fetchSubmodules = true; + }; + + installFlags = "PREFIX=$(out)"; + + nativeBuildInputs = [ pkgconfig ]; + buildInputs = [ + pango cairo libGLU lv2 + ]; + + meta = with stdenv.lib; { + description = "Dedicated AVLDrumkits LV2 Plugin"; + homepage = http://x42-plugins.com/x42/x42-avldrums; + license = licenses.gpl2; + maintainers = [ maintainers.magnetophon ]; + platforms = [ "i686-linux" "x86_64-linux" ]; + }; +} diff --git a/pkgs/applications/audio/axoloti/default.nix b/pkgs/applications/audio/axoloti/default.nix index 274233167bd8a820f432c8266f59aea51ef9714c..e3f1b6acf87462266fb133d68538cd3271173503 100644 --- a/pkgs/applications/audio/axoloti/default.nix +++ b/pkgs/applications/audio/axoloti/default.nix @@ -1,5 +1,6 @@ { stdenv, fetchFromGitHub, fetchurl, makeWrapper, unzip -, gnumake, gcc-arm-embedded, dfu-util-axoloti, jdk, ant, libfaketime }: +, gnumake, gcc-arm-embedded, binutils-arm-embedded +, dfu-util-axoloti, jdk, ant, libfaketime }: stdenv.mkDerivation rec { version = "1.0.12-2"; @@ -20,7 +21,15 @@ stdenv.mkDerivation rec { sha256 = "0lb5s8pkj80mqhsy47mmq0lqk34s2a2m3xagzihalvabwd0frhlj"; }; - buildInputs = [ makeWrapper unzip gcc-arm-embedded dfu-util-axoloti jdk ant libfaketime ]; + nativeBuildInputs = [ + makeWrapper + unzip + gcc-arm-embedded + binutils-arm-embedded + dfu-util-axoloti + ant + ]; + buildInputs = [jdk libfaketime ]; patchPhase = '' unzip ${chibios} @@ -31,15 +40,6 @@ stdenv.mkDerivation rec { substituteInPlace "chibios/os/various/shell.c" \ --replace "#ifdef __DATE__" "#if 0" - # Hardcode full path to compiler tools - for f in "firmware/Makefile.patch" \ - "firmware/Makefile" \ - "firmware/flasher/Makefile" \ - "firmware/mounter/Makefile"; do - substituteInPlace "$f" \ - --replace "arm-none-eabi-" "${gcc-arm-embedded}/bin/arm-none-eabi-" - done - # Hardcode path to "make" for f in "firmware/compile_firmware_linux.sh" \ "firmware/compile_patch_linux.sh"; do diff --git a/pkgs/applications/audio/bs1770gain/default.nix b/pkgs/applications/audio/bs1770gain/default.nix index edf7a313ff5fb625f08e82b422443568d811335d..44296d3c8b998fce9922e62afc38514952253c6a 100644 --- a/pkgs/applications/audio/bs1770gain/default.nix +++ b/pkgs/applications/audio/bs1770gain/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { name = "bs1770gain-${version}"; - version = "0.5.0"; + version = "0.5.1"; src = fetchurl { url = "mirror://sourceforge/bs1770gain/${name}.tar.gz"; - sha256 = "0vd7320k7s2zcn2vganclxbr1vav18ghld27rcwskvcc3dm8prii"; + sha256 = "0r4fbajgfmnwgl63hcm56f1j8m5f135q6j5jkzdvrrhpcj39yx06"; }; buildInputs = [ ffmpeg sox ]; diff --git a/pkgs/applications/audio/cmusfm/default.nix b/pkgs/applications/audio/cmusfm/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..e528e9699a733f5a8a6dc2322fc3134aea684b2b --- /dev/null +++ b/pkgs/applications/audio/cmusfm/default.nix @@ -0,0 +1,36 @@ +{ stdenv, fetchFromGitHub, autoreconfHook, pkgconfig, curl, libnotify, gdk_pixbuf }: + +stdenv.mkDerivation rec { + version = "2018-10-11"; + name = "cmusfm-unstable-${version}"; + src = fetchFromGitHub { + owner = "Arkq"; + repo = "cmusfm"; + rev = "ad2fd0aad3f4f1a25add1b8c2f179e8859885873"; + sha256 = "0wpwdwgyrp64nvwc6shy0n387p31j6aw6cnmfi9x2y1jhl5hbv6b"; + }; + # building + configureFlags = [ "--enable-libnotify" ]; + nativeBuildInputs = [ autoreconfHook pkgconfig ]; + buildInputs = [ curl libnotify gdk_pixbuf ]; + + meta = with stdenv.lib; { + description = "Last.fm and Libre.fm standalone scrobbler for the cmus music player"; + longDescription = '' + Features: + + Listening now notification support + + Off-line played track cache for later submission + + POSIX ERE-based file name parser + + Desktop notification support (optionally) + + Customizable scrobbling service + + Small memory footprint + Configuration: + + run `cmusfm init` to generate configuration file under ~/.config/cmus/cmusfm.conf + + Inside cmus run `:set status_display_program=cmusfm` to set up cmusfm + ''; + homepage = https://github.com/Arkq/cmusfm/; + maintainers = with stdenv.lib.maintainers; [ CharlesHD ]; + license = licenses.gpl3Plus; + platforms = platforms.linux ++ platforms.darwin; + }; +} diff --git a/pkgs/applications/audio/csound/default.nix b/pkgs/applications/audio/csound/default.nix index c8ac0a938efa84f27a5d77883ec441bb00068754..da3cff0bac24cd248e9d41d16073dadaf8a0c631 100644 --- a/pkgs/applications/audio/csound/default.nix +++ b/pkgs/applications/audio/csound/default.nix @@ -14,7 +14,7 @@ stdenv.mkDerivation rec { name = "csound-${version}"; - version = "6.11.0"; + version = "6.12.0"; enableParallelBuilding = true; @@ -24,7 +24,7 @@ stdenv.mkDerivation rec { owner = "csound"; repo = "csound"; rev = version; - sha256 = "1nnfl8dqvc5b3f94zbvdg6bxr2wlp7as78hb31awxmvfwwihpv18"; + sha256 = "0pv4s54cayvavdp6y30n3r1l5x83x9whyyd2v24y0dh224v3hbxi"; }; cmakeFlags = [ "-DBUILD_CSOUND_AC=0" ] # fails to find Score.hpp diff --git a/pkgs/applications/audio/espeak-ng/default.nix b/pkgs/applications/audio/espeak-ng/default.nix index f4160ff6f8081e4f65003b7bd9a2c396ea4ce8c7..5d0af8cf17ab4639f4d6935c2b0a5b1432847404 100644 --- a/pkgs/applications/audio/espeak-ng/default.nix +++ b/pkgs/applications/audio/espeak-ng/default.nix @@ -27,7 +27,7 @@ stdenv.mkDerivation rec { meta = with stdenv.lib; { description = "Open source speech synthesizer that supports over 70 languages, based on eSpeak"; - homepage = https://github.com/espeak-ng/espeak-ng; + homepage = src.meta.homepage; license = licenses.gpl3; maintainers = with maintainers; [ aske ]; platforms = platforms.linux; diff --git a/pkgs/applications/audio/flacon/default.nix b/pkgs/applications/audio/flacon/default.nix index 8f3facec09b1edbadf40efed0b7e9ed34e0ba96f..cec20743abdd73b35a07cf6a56979aa24515ab07 100644 --- a/pkgs/applications/audio/flacon/default.nix +++ b/pkgs/applications/audio/flacon/default.nix @@ -5,13 +5,13 @@ stdenv.mkDerivation rec { name = "flacon-${version}"; - version = "4.1.0"; + version = "5.0.0"; src = fetchFromGitHub { owner = "flacon"; repo = "flacon"; rev = "v${version}"; - sha256 = "1sw2v2w3s79lbzhkf96m8lwvag824am7rwfzzsi8bz6sa6krmj0m"; + sha256 = "0pglqm2z7mp5igqmfnmvrgjhfbfrj8q5jvd0a0g2dzv3rqwfw4vc"; }; nativeBuildInputs = [ cmake pkgconfig makeWrapper ]; diff --git a/pkgs/applications/audio/gradio/default.nix b/pkgs/applications/audio/gradio/default.nix index 0e636c532b467710ecb719d879eb19628c1fbeff..3aea07235d8acec604c11ec8980afdd5c93e9bc0 100644 --- a/pkgs/applications/audio/gradio/default.nix +++ b/pkgs/applications/audio/gradio/default.nix @@ -16,7 +16,7 @@ , gst_plugins ? with gst_all_1; [ gst-plugins-good gst-plugins-ugly ] }: let - version = "7.1"; + version = "7.2"; in stdenv.mkDerivation rec { name = "gradio-${version}"; @@ -25,7 +25,7 @@ in stdenv.mkDerivation rec { owner = "haecker-felix"; repo = "gradio"; rev = "v${version}"; - sha256 = "0x0hmcjvpgvsm64ywcc71srlwqybfhadn5nkwycq0lh7r49d89kx"; + sha256 = "0c4vlrfl0ljkiwarpwa8wcfmmihh6a5j4pi4yr0qshyl9xxvxiv3"; }; nativeBuildInputs = [ diff --git a/pkgs/applications/audio/gxplugins-lv2/default.nix b/pkgs/applications/audio/gxplugins-lv2/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..e7e4744eea2f32e39148058546dcfbec3a1e7b76 --- /dev/null +++ b/pkgs/applications/audio/gxplugins-lv2/default.nix @@ -0,0 +1,29 @@ +{ stdenv, fetchFromGitHub, xorg, xproto, cairo, lv2, pkgconfig }: + +stdenv.mkDerivation rec { + name = "${pname}-${version}"; + pname = "GxPlugins.lv2"; + version = "0.5"; + + src = fetchFromGitHub { + owner = "brummer10"; + repo = pname; + rev = "v${version}"; + sha256 = "16r5bj7w726d9327flg530fn0bli4crkxjss7i56yhb1bsi39mbv"; + fetchSubmodules = true; + }; + + nativeBuildInputs = [ pkgconfig ]; + buildInputs = [ + xorg.libX11 xproto cairo lv2 + ]; + + installFlags = [ "INSTALL_DIR=$(out)/lib/lv2" ]; + + meta = with stdenv.lib; { + homepage = https://github.com/brummer10/GxPlugins.lv2; + description = "A set of extra lv2 plugins from the guitarix project"; + maintainers = [ maintainers.magnetophon ]; + license = licenses.gpl3; + }; +} diff --git a/pkgs/applications/audio/hybridreverb2/default.nix b/pkgs/applications/audio/hybridreverb2/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..19aac1bd1e9578e5236cd203e0d52eb67d5c9bb4 --- /dev/null +++ b/pkgs/applications/audio/hybridreverb2/default.nix @@ -0,0 +1,49 @@ +{ stdenv, fetchFromGitHub, fetchzip, cmake, pkgconfig, lv2, alsaLib, libjack2, + freetype, libX11, gtk3, pcre, libpthreadstubs, libXdmcp, libxkbcommon, + epoxy, at-spi2-core, dbus, curl, fftwFloat }: + +let + pname = "HybridReverb2"; + version = "2.1.1"; + owner = "jpcima"; + DBversion = "1.0.0"; +in + +stdenv.mkDerivation rec { + name = "${pname}-${version}"; + + impulseDB = fetchzip { + url = "https://github.com/${owner}/${pname}-impulse-response-database/archive/v${DBversion}.zip"; + sha256 = "1hlfxbbkahm1k2sk3c3n2mjaz7k80ky3r55xil8nfbvbv0qan89z"; + }; + + src = fetchFromGitHub { + inherit owner; + repo = pname; + rev = "v${version}"; + sha256 = "15mba9qvlis0qrklr50wp3jdysvmk33m7pvclp0k1is9pirj97cb"; + fetchSubmodules = true; + }; + + nativeBuildInputs = [ pkgconfig cmake ]; + buildInputs = [ lv2 alsaLib libjack2 freetype libX11 gtk3 pcre + libpthreadstubs libXdmcp libxkbcommon epoxy at-spi2-core dbus curl fftwFloat ]; + + cmakeFlags = [ + "-DHybridReverb2_AdvancedJackStandalone=ON" + "-DHybridReverb2_UseLocalDatabase=ON" + ]; + + postInstall = '' + mkdir -p $out/share/${pname}/ + cp -r ${impulseDB}/* $out/share/${pname}/ + ''; + + meta = with stdenv.lib; { + homepage = http://www2.ika.ruhr-uni-bochum.de/HybridReverb2; + description = "Reverb effect using hybrid impulse convolution"; + license = licenses.gpl2Plus; + maintainers = [ maintainers.magnetophon ]; + platforms = platforms.linux; + }; +} diff --git a/pkgs/applications/audio/lollypop/default.nix b/pkgs/applications/audio/lollypop/default.nix index 034d2059283dbe6392daea07669a09b93613e4c5..f68d93fa69d4f5be6888171de17ad60fefbaa5d6 100644 --- a/pkgs/applications/audio/lollypop/default.nix +++ b/pkgs/applications/audio/lollypop/default.nix @@ -4,7 +4,7 @@ , gobjectIntrospection, wrapGAppsHook }: python3.pkgs.buildPythonApplication rec { - version = "0.9.607"; + version = "0.9.611"; name = "lollypop-${version}"; format = "other"; @@ -14,7 +14,7 @@ python3.pkgs.buildPythonApplication rec { url = "https://gitlab.gnome.org/World/lollypop"; rev = "refs/tags/${version}"; fetchSubmodules = true; - sha256 = "04giwp4i7j1qad41fiqlb8s3w03f1ww0p2mhi8n162sajnflr1rd"; + sha256 = "1k78a26sld0xd14c9hr4qv8c7qaq1m8zqk1mzrh4pl7ysqqg9p20"; }; nativeBuildInputs = with python3.pkgs; [ diff --git a/pkgs/applications/audio/ltc-tools/default.nix b/pkgs/applications/audio/ltc-tools/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..79edfdef5040f4e6f9af6c7f5f58934bb3be9c96 --- /dev/null +++ b/pkgs/applications/audio/ltc-tools/default.nix @@ -0,0 +1,25 @@ +{stdenv, fetchFromGitHub, pkgconfig, libltc, libsndfile, jack2}: + +stdenv.mkDerivation rec { + name = "ltc-tools-${version}"; + version = "0.6.4"; + + src = fetchFromGitHub { + owner = "x42"; + repo = "ltc-tools"; + rev = "v${version}"; + sha256 = "1a7r99mwc7p5j5y453mrgph67wlznd674v4k2pfmlvc91s6lh44y"; + }; + + buildInputs = [ pkgconfig libltc libsndfile jack2 ]; + + makeFlags = [ "PREFIX=$(out)" ]; + + meta = with stdenv.lib; { + homepage = "https://github.com/x42/ltc-tools"; + description = "Tools to deal with linear-timecode (LTC)"; + license = licenses.gpl2; + platforms = platforms.unix; + maintainers = with maintainers; [ tg-x ]; + }; +} diff --git a/pkgs/applications/audio/mixxx/default.nix b/pkgs/applications/audio/mixxx/default.nix index a5582f908fc0a67b6f965a4dbf8ac8928c35cf7c..a99683ef994284200053670956b37000f51617e5 100644 --- a/pkgs/applications/audio/mixxx/default.nix +++ b/pkgs/applications/audio/mixxx/default.nix @@ -8,13 +8,13 @@ stdenv.mkDerivation rec { name = "mixxx-${version}"; - version = "2.1.4"; + version = "2.1.5"; src = fetchFromGitHub { owner = "mixxxdj"; repo = "mixxx"; rev = "release-${version}"; - sha256 = "1q1px4033marraprvgr5yq9jlz943kcc10fdkn7py2ma8cfgnipq"; + sha256 = "0h14pwglz03sdmgzviypv1qa1xfjclrnhyqaq5nd60j47h4z39dr"; }; nativeBuildInputs = [ makeWrapper ]; diff --git a/pkgs/applications/audio/mopidy/iris.nix b/pkgs/applications/audio/mopidy/iris.nix index 3649a0a6886382062d44398a7764238dea900fdf..c89bb2e897baabb7da310b395ec04322cc013401 100644 --- a/pkgs/applications/audio/mopidy/iris.nix +++ b/pkgs/applications/audio/mopidy/iris.nix @@ -2,11 +2,11 @@ pythonPackages.buildPythonApplication rec { pname = "Mopidy-Iris"; - version = "3.28.1"; + version = "3.29.2"; src = pythonPackages.fetchPypi { inherit pname version; - sha256 = "0yph01z8lw0r5bw3aa14w0l7z1ymxvpmb131gbaw3ib0srssgz64"; + sha256 = "1v767a2j6lzp5yppfjna0ifv8psj60pphzd7njcdkx71dvpswpi2"; }; propagatedBuildInputs = [ diff --git a/pkgs/applications/audio/picard/default.nix b/pkgs/applications/audio/picard/default.nix index d7e6173da9ad169fb47a1496f37651ac6f22e3eb..3dae0ca5d7c4310ef663375eff70de627546c7f0 100644 --- a/pkgs/applications/audio/picard/default.nix +++ b/pkgs/applications/audio/picard/default.nix @@ -1,21 +1,22 @@ -{ stdenv, python2Packages, fetchurl, gettext }: +{ stdenv, python3Packages, fetchurl, gettext, chromaprint }: let - pythonPackages = python2Packages; + pythonPackages = python3Packages; in pythonPackages.buildPythonApplication rec { pname = "picard"; - version = "1.4.2"; + version = "2.0.4"; src = fetchurl { url = "http://ftp.musicbrainz.org/pub/musicbrainz/picard/picard-${version}.tar.gz"; - sha256 = "0d12k40d9fbcn801gp5zdsgvjdrh4g97vda3ga16rmmvfwwfxbgh"; + sha256 = "0ds3ylpqn717fnzcjrfn05v5xram01bj6n3hwn9igmkd1jgf8vhc"; }; buildInputs = [ gettext ]; propagatedBuildInputs = with pythonPackages; [ - pyqt4 + pyqt5 mutagen + chromaprint discid ]; @@ -23,6 +24,11 @@ in pythonPackages.buildPythonApplication rec { python setup.py install --prefix="$out" ''; + prePatch = '' + # Pesky unicode punctuation. + substituteInPlace setup.cfg --replace "‘" "'" + ''; + doCheck = false; meta = with stdenv.lib; { diff --git a/pkgs/applications/audio/pulseaudio-modules-bt/default.nix b/pkgs/applications/audio/pulseaudio-modules-bt/default.nix index b377db65c0c92d5c2007e523af14d41d2016d137..cb267d8bbb66be15a8207d48f57341dca7d0696f 100644 --- a/pkgs/applications/audio/pulseaudio-modules-bt/default.nix +++ b/pkgs/applications/audio/pulseaudio-modules-bt/default.nix @@ -5,6 +5,7 @@ , pkgconfig , ffmpeg_4 , patchelf +, fdk_aac , libtool , cmake , bluez @@ -22,13 +23,13 @@ let in stdenv.mkDerivation rec { name = "pulseaudio-modules-bt-${version}"; - version = "unstable-2018-10-16"; + version = "unstable-2018-11-01"; src = fetchFromGitHub { owner = "EHfive"; repo = "pulseaudio-modules-bt"; - rev = "552c2b48c0cc7dd44d0746b261f7c7d5559e8e30"; - sha256 = "052jb1hjx1in7bafx4zpn78s7r6f2y7djriwi36dzqy9wmalmyjy"; + rev = "a2f62fcaa702bb883c07d074ebca8d7135520ab8"; + sha256 = "1fhg7q9064zikhy0xxldn4fvh49pc47mgikcbd9yhsk66gcn6zj3"; fetchSubmodules = true; }; @@ -45,6 +46,7 @@ in stdenv.mkDerivation rec { buildInputs = [ pulseaudio ffmpeg_4 + fdk_aac libtool bluez dbus @@ -72,7 +74,7 @@ in stdenv.mkDerivation rec { meta = with stdenv.lib; { homepage = https://github.com/EHfive/pulseaudio-modules-bt; - description = "SBC, Sony LDAC codec (A2DP Audio) support for Pulseaudio"; + description = "LDAC, aptX, aptX HD, AAC codecs (A2DP Audio) support for Linux PulseAudio"; platforms = platforms.linux; license = licenses.mit; maintainers = with maintainers; [ adisbladis ]; diff --git a/pkgs/applications/audio/pulseaudio-modules-bt/fix-install-path.patch b/pkgs/applications/audio/pulseaudio-modules-bt/fix-install-path.patch index 2b4ff86ab71b30ca5dc99d9ce7e668743586e08f..e500d1fb13335e4d875892f747c19206cc1efef5 100644 --- a/pkgs/applications/audio/pulseaudio-modules-bt/fix-install-path.patch +++ b/pkgs/applications/audio/pulseaudio-modules-bt/fix-install-path.patch @@ -1,11 +1,20 @@ diff --git a/CMakeLists.txt b/CMakeLists.txt -index 0f5baa0..1f35cce 100644 +index d869979..185144d 100644 --- a/CMakeLists.txt +++ b/CMakeLists.txt -@@ -122,5 +121,4 @@ INSTALL(TARGETS +@@ -143,13 +143,13 @@ INSTALL(TARGETS module-bluez5-device module-bluetooth-discover module-bluetooth-policy - LIBRARY DESTINATION ${PulseAudio_modlibexecdir}) -- + LIBRARY DESTINATION ${CMAKE_INSTALL_PREFIX}/lib/pulse-${PulseAudio_VERSION}/modules/) + + if(NOT ${HAVE_SYSTEM_LDAC}) + + INSTALL(TARGETS + ldacBT_enc + ldacBT_abr +- LIBRARY DESTINATION ${PulseAudio_modlibexecdir}) ++ LIBRARY DESTINATION ${CMAKE_INSTALL_PREFIX}/lib/pulse-${PulseAudio_VERSION}/modules/) + + endif() diff --git a/pkgs/applications/audio/quodlibet/default.nix b/pkgs/applications/audio/quodlibet/default.nix index baf49ff78e598c190f6bb2736e8aab239477fcd4..e26c2496d56645efc980bd64135b23baf1e4db13 100644 --- a/pkgs/applications/audio/quodlibet/default.nix +++ b/pkgs/applications/audio/quodlibet/default.nix @@ -9,7 +9,7 @@ let optionals = stdenv.lib.optionals; in python3.pkgs.buildPythonApplication rec { pname = "quodlibet${tag}"; - version = "4.1.0"; + version = "4.2.0"; # XXX, tests fail # https://github.com/quodlibet/quodlibet/issues/2820 @@ -17,7 +17,7 @@ python3.pkgs.buildPythonApplication rec { src = fetchurl { url = "https://github.com/quodlibet/quodlibet/releases/download/release-${version}/quodlibet-${version}.tar.gz"; - sha256 = "1vcxx4sz5i4ag74pjpdfw7jkwxfb8jhvn8igcjwd5cccw4gscm2z"; + sha256 = "0w64i999ipzgjb4c4lzw7jp792amd6km46wahx7m3bpzly55r3f6"; }; nativeBuildInputs = [ wrapGAppsHook gettext intltool ]; diff --git a/pkgs/applications/audio/sfxr-qt/default.nix b/pkgs/applications/audio/sfxr-qt/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..a98d1431d65e4473f229300ba581bbaf08d7dfa4 --- /dev/null +++ b/pkgs/applications/audio/sfxr-qt/default.nix @@ -0,0 +1,36 @@ +{ stdenv, fetchFromGitHub +, cmake +, qtbase, qtquickcontrols2 +, SDL +, python3 +}: + +stdenv.mkDerivation rec { + name = "sfxr-qt-${version}"; + version = "1.2.0"; + src = fetchFromGitHub { + owner = "agateau"; + repo = "sfxr-qt"; + rev = version; + sha256 = "1ndw1dcmzvkrc6gnb0y057zb4lqlhwrv18jlbx26w3s4xrbxqr41"; + fetchSubmodules = true; + }; + nativeBuildInputs = [ + cmake + (python3.withPackages (pp: with pp; [ pyyaml jinja2 ])) + ]; + buildInputs = [ + qtbase qtquickcontrols2 + SDL + ]; + configurePhase = "cmake . -DCMAKE_INSTALL_PREFIX=$out"; + + meta = with stdenv.lib; { + homepage = https://github.com/agateau/sfxr-qt; + description = "A sound effect generator, QtQuick port of sfxr"; + license = licenses.gpl2; + maintainers = with maintainers; [ fgaz ]; + platforms = platforms.linux; + }; +} + diff --git a/pkgs/applications/audio/spotify/default.nix b/pkgs/applications/audio/spotify/default.nix index cbcf5220564bb7ed6b6aa2b1c4d714ef5f692e72..15aaab40a678991d8579eef314f71288de86c65c 100644 --- a/pkgs/applications/audio/spotify/default.nix +++ b/pkgs/applications/audio/spotify/default.nix @@ -5,14 +5,14 @@ let # TO UPDATE: just execute the ./update.sh script (won't do anything if there is no update) # "rev" decides what is actually being downloaded - version = "1.0.83.316.ge96b6e67-5"; + version = "1.0.93.242.gc2341a27-15"; # To get the latest stable revision: # curl -H 'X-Ubuntu-Series: 16' 'https://api.snapcraft.io/api/v1/snaps/details/spotify?channel=stable' | jq '.download_url,.version,.last_updated' # To get general information: # curl -H 'Snap-Device-Series: 16' 'https://api.snapcraft.io/v2/snaps/info/spotify' | jq '.' # More examples of api usage: # https://github.com/canonical-websites/snapcraft.io/blob/master/webapp/publisher/snaps/views.py - rev = "17"; + rev = "24"; deps = [ @@ -65,7 +65,7 @@ stdenv.mkDerivation { # https://community.spotify.com/t5/Desktop-Linux/Redistribute-Spotify-on-Linux-Distributions/td-p/1695334 src = fetchurl { url = "https://api.snapcraft.io/api/v1/snaps/download/pOBIoZ2LrCB3rDohMxoYGnbN14EHOgD7_${rev}.snap"; - sha512 = "19bbr4142shsl4qrikf48vq7kyrd4k4jbsada13qxicxps46a9bx51vjm2hkijqv739c1gdkgzwx7llyk95z26lhrz53shm2n5ij8xi"; + sha512 = "920d55b3dcad4ac6acd9bc73c8ad8eb1668327a175da465ce3d8bba2430da47aaefa5218659315fab43b5182611eb03047d4e2679c1345c57380b7def7a1212d"; }; buildInputs = [ squashfsTools makeWrapper ]; diff --git a/pkgs/applications/audio/vocal/default.nix b/pkgs/applications/audio/vocal/default.nix index 97f59ee5f94fb7095a794b61a13859a6a14a916e..af8b3ac93949bab8645a0e0d6e4e49523da81ed2 100644 --- a/pkgs/applications/audio/vocal/default.nix +++ b/pkgs/applications/audio/vocal/default.nix @@ -1,9 +1,9 @@ -{ stdenv, fetchFromGitHub, cmake, ninja, pkgconfig, vala, gtk3, libxml2, granite, webkitgtk, clutter-gtk +{ stdenv, fetchFromGitHub, cmake, ninja, pkgconfig, vala_0_40, gtk3, libxml2, granite, webkitgtk, clutter-gtk , clutter-gst, libunity, libnotify, sqlite, gst_all_1, libsoup, json-glib, gnome3, gobjectIntrospection, wrapGAppsHook }: stdenv.mkDerivation rec { pname = "vocal"; - version = "2.2.0"; + version = "2.3.0"; name = "${pname}-${version}"; @@ -11,7 +11,7 @@ stdenv.mkDerivation rec { owner = "needle-and-thread"; repo = pname; rev = version; - sha256 = "09cm4azyaa9fmfymygf25gf0klpm5p04k6bc1i90jhw0f1im8sgl"; + sha256 = "1wkkyai14in4yk3q4qq23wk3l49px2xi8z819y3glna236qsq6qp"; }; nativeBuildInputs = [ @@ -20,13 +20,14 @@ stdenv.mkDerivation rec { libxml2 ninja pkgconfig - vala + vala_0_40 # should be `elementary.vala` when elementary attribute set is merged wrapGAppsHook ]; buildInputs = with gst_all_1; [ clutter-gst clutter-gtk + gnome3.defaultIconTheme # should be `elementary.defaultIconTheme`when elementary attribute set is merged gnome3.libgee granite gst-plugins-base diff --git a/pkgs/applications/audio/wolf-shaper/default.nix b/pkgs/applications/audio/wolf-shaper/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..562fdc1be8b6442711ebfa6ee0e790eaec7003cc --- /dev/null +++ b/pkgs/applications/audio/wolf-shaper/default.nix @@ -0,0 +1,47 @@ +{ stdenv, fetchFromGitHub , libjack2, lv2, xorg, liblo, libGL, libXcursor, pkgconfig }: + +stdenv.mkDerivation rec { + name = "wolf-shaper-${version}"; + version = "0.1.6"; + + src = fetchFromGitHub { + owner = "pdesaulniers"; + repo = "wolf-shaper"; + rev = "v${version}"; + sha256 = "01h5dm1nrr0i54ancwznr7wn4vpw08dw0b69v3axy32r5j7plw6s"; + fetchSubmodules = true; + }; + + nativeBuildInputs = [ pkgconfig ]; + buildInputs = [ libjack2 lv2 xorg.libX11 liblo libGL libXcursor ]; + + makeFlags = [ + "BUILD_LV2=true" + "BUILD_DSSI=true" + "BUILD_VST2=true" + "BUILD_JACK=true" + ]; + + patchPhase = '' + patchShebangs ./dpf/utils/generate-ttl.sh + ''; + + installPhase = '' + mkdir -p $out/lib/lv2 + mkdir -p $out/lib/dssi + mkdir -p $out/lib/vst + mkdir -p $out/bin/ + cp -r bin/wolf-shaper.lv2 $out/lib/lv2/ + cp -r bin/wolf-shaper-dssi* $out/lib/dssi/ + cp -r bin/wolf-shaper-vst.so $out/lib/vst/ + cp -r bin/wolf-shaper $out/bin/ + ''; + + meta = with stdenv.lib; { + homepage = https://pdesaulniers.github.io/wolf-shaper/; + description = "Waveshaper plugin with spline-based graph editor"; + license = licenses.gpl3; + maintainers = [ maintainers.magnetophon ]; + platforms = [ "i686-linux" "x86_64-linux" ]; + }; +} diff --git a/pkgs/applications/display-managers/lightdm-mini-greeter/default.nix b/pkgs/applications/display-managers/lightdm-mini-greeter/default.nix index ef80aa00563fa009c074b372053096f6876c83c4..91446f73507e424abc8635bb9b8e6a82798c1914 100644 --- a/pkgs/applications/display-managers/lightdm-mini-greeter/default.nix +++ b/pkgs/applications/display-managers/lightdm-mini-greeter/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { name = "lightdm-mini-greeter-${version}"; - version = "0.3.2"; + version = "0.3.4"; src = fetchFromGitHub { owner = "prikhi"; repo = "lightdm-mini-greeter"; rev = version; - sha256 = "1g3lrh034w38hiq96b0xmghmlf87hcycwdh06dwkdksr0hl08wxy"; + sha256 = "1qi0bsqi8z2zv3303ww0kd7bciz6qx8na5bkvgrqlwyvq31czai5"; }; nativeBuildInputs = [ autoreconfHook pkgconfig ]; @@ -26,7 +26,7 @@ stdenv.mkDerivation rec { description = "A minimal, configurable, single-user GTK3 LightDM greeter"; homepage = https://github.com/prikhi/lightdm-mini-greeter; license = licenses.gpl3; - maintainers = with maintainers; [ mnacamura ]; + maintainers = with maintainers; [ mnacamura prikhi ]; platforms = platforms.linux; }; } diff --git a/pkgs/applications/display-managers/ly/default.nix b/pkgs/applications/display-managers/ly/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..e8edcc3f634c32b8859978f549c39da02452b491 --- /dev/null +++ b/pkgs/applications/display-managers/ly/default.nix @@ -0,0 +1,29 @@ +{ stdenv, lib, fetchFromGitHub, linux-pam }: + +stdenv.mkDerivation rec { + name = "ly-${version}"; + version = "0.2.1"; + + src = fetchFromGitHub { + owner = "cylgom"; + repo = "ly"; + rev = version; + sha256 = "16gjcrd4a6i4x8q8iwlgdildm7cpdsja8z22pf2izdm6rwfki97d"; + fetchSubmodules = true; + }; + + buildInputs = [ linux-pam ]; + makeFlags = [ "FLAGS=-Wno-error" ]; + + installPhase = '' + mkdir -p $out/bin + cp bin/ly $out/bin + ''; + + meta = with lib; { + description = "TUI display manager"; + license = licenses.wtfpl; + homepage = https://github.com/cylgom/ly; + maintainers = [ maintainers.spacekookie ]; + }; +} diff --git a/pkgs/applications/editors/android-studio/default.nix b/pkgs/applications/editors/android-studio/default.nix index bf9c7b7e129bc9ae444f0730971a75c1ac15db65..f2e77d65f05fe1a11ac6da3471a39ca4181758a8 100644 --- a/pkgs/applications/editors/android-studio/default.nix +++ b/pkgs/applications/editors/android-studio/default.nix @@ -13,14 +13,14 @@ let sha256Hash = "117skqjax1xz9plarhdnrw2rwprjpybdc7mx7wggxapyy920vv5r"; }; betaVersion = { - version = "3.3.0.13"; # "Android Studio 3.3 Beta 1" - build = "182.5073496"; - sha256Hash = "0bg1h0msd6mpkvirkg4pssa1ak32smv2rlxxsjdm3p29p8gg59px"; + version = "3.3.0.15"; # "Android Studio 3.3 Beta 3" + build = "182.5105271"; + sha256Hash = "03j3g39v1g4jf5q37bd50zfqsgjfnwnyhjgx8vkfwlg263vhhvdq"; }; latestVersion = { # canary & dev - version = "3.4.0.1"; # "Android Studio 3.4 Canary 2" - build = "183.5081642"; - sha256Hash = "0ck6habkgnwbr10pr3bfy8ywm3dsm21k9jdj7g685v22sw0zy3yk"; + version = "3.4.0.2"; # "Android Studio 3.4 Canary 3" + build = "183.5112304"; + sha256Hash = "0dzk4ag1dirfq8l2q91j6hsfyi07wx52qcsmbjb9a2710rlwpdhp"; }; in rec { # Old alias diff --git a/pkgs/applications/editors/atom/default.nix b/pkgs/applications/editors/atom/default.nix index a6525804ee0be7fd92dcd6832ba7a8184d3c4b1d..834c6bedf3c0bb374962e44e8dfd7f642bb3a449 100644 --- a/pkgs/applications/editors/atom/default.nix +++ b/pkgs/applications/editors/atom/default.nix @@ -3,14 +3,14 @@ let versions = { atom = { - version = "1.32.0"; - sha256 = "0dha8zi4gshxj993ns7ybi7q86pfqwzsasrk3a7b5xrdqbrcm5md"; + version = "1.32.1"; + sha256 = "1x22jbhvagqw9mvq0v7z4z09qp727vl0rkyvaxn98xnj9gvcfkq9"; }; atom-beta = { version = "1.33.0"; - beta = 0; - sha256 = "1x4s12zvfd2gjy7mimndbhs6x9k37jq4dyy6r1mzhwfysix74val"; + beta = 1; + sha256 = "0sf98apmb57msgr5p1xly0mffzn2s808nsfsmbisk4qqmm9fv2m3"; }; }; diff --git a/pkgs/applications/editors/emacs/25.nix b/pkgs/applications/editors/emacs/25.nix index ee21bbbd9bd9a94b6d1fc12438f1d21ebbb90ee3..6576cd544729f9cffb456c5c04fbf912f1e656db 100644 --- a/pkgs/applications/editors/emacs/25.nix +++ b/pkgs/applications/editors/emacs/25.nix @@ -1,7 +1,7 @@ { stdenv, lib, fetchurl, ncurses, xlibsWrapper, libXaw, libXpm, Xaw3d , pkgconfig, gettext, libXft, dbus, libpng, libjpeg, libungif , libtiff, librsvg, gconf, libxml2, imagemagick, gnutls, libselinux -, alsaLib, cairo, acl, gpm, AppKit, GSS, ImageIO +, alsaLib, cairo, acl, gpm, cf-private, AppKit, GSS, ImageIO , withX ? !stdenv.isDarwin , withGTK2 ? false, gtk2 ? null , withGTK3 ? true, gtk3 ? null, gsettings-desktop-schemas ? null @@ -61,9 +61,12 @@ stdenv.mkDerivation rec { ++ lib.optional (withX && withGTK2) gtk2 ++ lib.optionals (withX && withGTK3) [ gtk3 gsettings-desktop-schemas ] ++ lib.optional (stdenv.isDarwin && withX) cairo - ++ lib.optionals (withX && withXwidgets) [ webkitgtk24x-gtk3 glib-networking ]; - - propagatedBuildInputs = lib.optionals stdenv.isDarwin [ AppKit GSS ImageIO ]; + ++ lib.optionals (withX && withXwidgets) [ webkitgtk24x-gtk3 glib-networking ] + ++ lib.optionals stdenv.isDarwin [ + AppKit GSS ImageIO + # Needed for CFNotificationCenterAddObserver symbols. + cf-private + ]; hardeningDisable = [ "format" ]; diff --git a/pkgs/applications/editors/emacs/default.nix b/pkgs/applications/editors/emacs/default.nix index c1bfdf8157daecbbaf36aab9f1cf7a0a4ceb9c90..e95d2b61535955572d29b447e557a857daf0440b 100644 --- a/pkgs/applications/editors/emacs/default.nix +++ b/pkgs/applications/editors/emacs/default.nix @@ -1,7 +1,7 @@ { stdenv, lib, fetchurl, ncurses, xlibsWrapper, libXaw, libXpm, Xaw3d , pkgconfig, gettext, libXft, dbus, libpng, libjpeg, libungif , libtiff, librsvg, gconf, libxml2, imagemagick, gnutls, libselinux -, alsaLib, cairo, acl, gpm, AppKit, GSS, ImageIO, m17n_lib, libotf +, alsaLib, cairo, acl, gpm, cf-private, AppKit, GSS, ImageIO, m17n_lib, libotf , systemd ? null , withX ? !stdenv.isDarwin , withNS ? stdenv.isDarwin @@ -64,9 +64,12 @@ stdenv.mkDerivation rec { ++ lib.optional (withX && withGTK2) gtk2-x11 ++ lib.optionals (withX && withGTK3) [ gtk3-x11 gsettings-desktop-schemas ] ++ lib.optional (stdenv.isDarwin && withX) cairo - ++ lib.optionals (withX && withXwidgets) [ webkitgtk ]; - - propagatedBuildInputs = lib.optionals withNS [ AppKit GSS ImageIO ]; + ++ lib.optionals (withX && withXwidgets) [ webkitgtk ] + ++ lib.optionals withNS [ + AppKit GSS ImageIO + # Needed for CFNotificationCenterAddObserver symbols. + cf-private + ]; hardeningDisable = [ "format" ]; diff --git a/pkgs/applications/editors/emacs/macport.nix b/pkgs/applications/editors/emacs/macport.nix index 0876a71cbf73ec8ca2cf45a8b06ac96debda91ec..7070ce597388b7bc62d61ab43b2cbe66b2591ef3 100644 --- a/pkgs/applications/editors/emacs/macport.nix +++ b/pkgs/applications/editors/emacs/macport.nix @@ -1,5 +1,5 @@ { stdenv, fetchurl, ncurses, pkgconfig, texinfo, libxml2, gnutls, gettext, autoconf, automake -, AppKit, Carbon, Cocoa, IOKit, OSAKit, Quartz, QuartzCore, WebKit +, cf-private, AppKit, Carbon, Cocoa, IOKit, OSAKit, Quartz, QuartzCore, WebKit , ImageCaptureCore, GSS, ImageIO # These may be optional }: @@ -33,6 +33,8 @@ stdenv.mkDerivation rec { buildInputs = [ ncurses libxml2 gnutls texinfo gettext AppKit Carbon Cocoa IOKit OSAKit Quartz QuartzCore WebKit ImageCaptureCore GSS ImageIO # may be optional + # Needed for CFNotificationCenterAddObserver symbols. + cf-private ]; postUnpack = '' diff --git a/pkgs/applications/editors/jetbrains/default.nix b/pkgs/applications/editors/jetbrains/default.nix index f5fbf1b5f03dd063be1e5dce38a7caf8b03015f2..7d25b1ed39dd7316c9c8ba7e5d1e183619337785 100644 --- a/pkgs/applications/editors/jetbrains/default.nix +++ b/pkgs/applications/editors/jetbrains/default.nix @@ -250,12 +250,12 @@ in clion = buildClion rec { name = "clion-${version}"; - version = "2018.2.4"; /* updated by script */ + version = "2018.2.5"; /* updated by script */ description = "C/C++ IDE. New. Intelligent. Cross-platform"; license = stdenv.lib.licenses.unfree; src = fetchurl { url = "https://download.jetbrains.com/cpp/CLion-${version}.tar.gz"; - sha256 = "0ljzdjvlkm37gclny652nm7kw2hlyl1iiix6h44zq7fhszp5kmyr"; /* updated by script */ + sha256 = "0brbwgyjh38ix8nr176glmc3kr7ndi8wppxqkb1c890jw5d3916j"; /* updated by script */ }; wmClass = "jetbrains-clion"; update-channel = "CLion Release"; # channel's id as in http://www.jetbrains.com/updates/updates.xml @@ -315,12 +315,12 @@ in phpstorm = buildPhpStorm rec { name = "phpstorm-${version}"; - version = "2018.2.3"; /* updated by script */ + version = "2018.2.5"; /* updated by script */ description = "Professional IDE for Web and PHP developers"; license = stdenv.lib.licenses.unfree; src = fetchurl { url = "https://download.jetbrains.com/webide/PhpStorm-${version}.tar.gz"; - sha256 = "1kdv3h749ly2sadixz3khaxrias3k72fi2ixrzniynwhgiqixz70"; /* updated by script */ + sha256 = "0crr3056hlv9x2q1i1n00aavj53xkwkfy4lgyyphk81c0gly4dg1"; /* updated by script */ }; wmClass = "jetbrains-phpstorm"; update-channel = "PhpStorm 2018.2"; @@ -367,12 +367,12 @@ in ruby-mine = buildRubyMine rec { name = "ruby-mine-${version}"; - version = "2018.2.2"; /* updated by script */ + version = "2018.2.4"; /* updated by script */ description = "The Most Intelligent Ruby and Rails IDE"; license = stdenv.lib.licenses.unfree; src = fetchurl { url = "https://download.jetbrains.com/ruby/RubyMine-${version}.tar.gz"; - sha256 = "0585dnbvmzxnj2am6b04lfw75rdhk0fby2cbj58pzzcjz5xlrhvq"; /* updated by script */ + sha256 = "0dk3ch749ai5kyg9q8819ckrqw2jk4f656iqrkkpab9fjqfjylka"; /* updated by script */ }; wmClass = "jetbrains-rubymine"; update-channel = "RubyMine 2018.2"; @@ -380,12 +380,12 @@ in webstorm = buildWebStorm rec { name = "webstorm-${version}"; - version = "2018.2.3"; /* updated by script */ + version = "2018.2.5"; /* updated by script */ description = "Professional IDE for Web and JavaScript development"; license = stdenv.lib.licenses.unfree; src = fetchurl { url = "https://download.jetbrains.com/webstorm/WebStorm-${version}.tar.gz"; - sha256 = "0y3a1p047knc598aamxxdmcf5nr86wk60w6nk2bhcasxjyqaw6r4"; /* updated by script */ + sha256 = "0d4l2bf87i6kv45qmbw55hvcrnxr6zxjcjicbkjs2k01lv7y605c"; /* updated by script */ }; wmClass = "jetbrains-webstorm"; update-channel = "WebStorm Release"; diff --git a/pkgs/applications/editors/kakoune/default.nix b/pkgs/applications/editors/kakoune/default.nix index e50625fa0e89998176a79673194b55d580f8603b..23f9e486ad9a52fd94f9edd1f2232e0124841957 100644 --- a/pkgs/applications/editors/kakoune/default.nix +++ b/pkgs/applications/editors/kakoune/default.nix @@ -4,12 +4,12 @@ with stdenv.lib; stdenv.mkDerivation rec { name = "kakoune-unstable-${version}"; - version = "2018.09.04"; + version = "2018.10.27"; src = fetchFromGitHub { repo = "kakoune"; owner = "mawww"; rev = "v${version}"; - sha256 = "08v55hh7whm6hx6a047gszh0h5g35k3r8r52aggv7r2ybzrrw6w1"; + sha256 = "1w7jmq57h8gxxbzg0n3lgd6cci77xb9mziy6lr8330nzqc85zp9p"; }; nativeBuildInputs = [ pkgconfig ]; buildInputs = [ ncurses asciidoc docbook_xsl libxslt ]; diff --git a/pkgs/applications/editors/nano/default.nix b/pkgs/applications/editors/nano/default.nix index 36c400a74faab3b620055bff25f0017894714e34..0e313d33736aee69527a704e8feff06be261d3fe 100644 --- a/pkgs/applications/editors/nano/default.nix +++ b/pkgs/applications/editors/nano/default.nix @@ -20,11 +20,11 @@ let in stdenv.mkDerivation rec { name = "nano-${version}"; - version = "3.1"; + version = "3.2"; src = fetchurl { url = "mirror://gnu/nano/${name}.tar.xz"; - sha256 = "17kinzyv6vwgyx2d0ym1kp65qbf7kxzwpyg21ic1rijv1aj2rh0l"; + sha256 = "0jb3zq0v84xb0chyynkcp2jhs9660wmpkic294p4p6c96npp69yi"; }; nativeBuildInputs = [ texinfo ] ++ optional enableNls gettext; diff --git a/pkgs/applications/editors/notepadqq/default.nix b/pkgs/applications/editors/notepadqq/default.nix index 6d1bba8c4d5dd3d4d46df014e5be7cbad3152918..ab79c3e780b29f6c517bc0d995e40b69033828aa 100644 --- a/pkgs/applications/editors/notepadqq/default.nix +++ b/pkgs/applications/editors/notepadqq/default.nix @@ -1,13 +1,14 @@ -{ stdenv, fetchgit, pkgconfig, which, qtbase, qtsvg, qttools, qtwebkit}: +{ stdenv, fetchFromGitHub, pkgconfig, which, qtbase, qtsvg, qttools, qtwebkit}: let - version = "1.2.0"; + version = "1.4.8"; in stdenv.mkDerivation { name = "notepadqq-${version}"; - src = fetchgit { - url = "https://github.com/notepadqq/notepadqq.git"; - rev = "ab074d30e02d49e0fe6957c1523e7fed239aff7d"; - sha256 = "0j8vqsdw314qpk5lrgccm9n7gbyr14ac3s65sl1qn87pxhrz1hpg"; + src = fetchFromGitHub { + owner = "notepadqq"; + repo = "notepadqq"; + rev = "v${version}"; + sha256 = "0lbv4s7ng31dkznzbkmp2cvkqglmfj6lv4mbg3r410fif2nrva7k"; fetchSubmodules = true; }; @@ -23,8 +24,10 @@ in stdenv.mkDerivation { export LRELEASE="lrelease" ''; + enableParallelBuilding = true; + meta = { - homepage = http://notepadqq.altervista.org/; + homepage = https://notepadqq.com/; description = "Notepad++-like editor for the Linux desktop"; license = stdenv.lib.licenses.gpl3; platforms = stdenv.lib.platforms.linux; diff --git a/pkgs/applications/editors/quilter/default.nix b/pkgs/applications/editors/quilter/default.nix index 4d4cb0239bf3e5febc86e2ff7013f81478319fd5..87ffd3256a882851993121a4fe95f3d21d51f779 100644 --- a/pkgs/applications/editors/quilter/default.nix +++ b/pkgs/applications/editors/quilter/default.nix @@ -1,10 +1,10 @@ -{ stdenv, fetchFromGitHub, fetchpatch, vala, pkgconfig, meson, ninja, python3 +{ stdenv, fetchFromGitHub, fetchpatch, vala_0_40, pkgconfig, meson, ninja, python3 , granite, gtk3, desktop-file-utils, gnome3, gtksourceview, webkitgtk, gtkspell3 , discount, gobjectIntrospection, wrapGAppsHook }: stdenv.mkDerivation rec { pname = "quilter"; - version = "1.6.3"; + version = "1.6.8"; name = "${pname}-${version}"; @@ -12,7 +12,7 @@ stdenv.mkDerivation rec { owner = "lainsce"; repo = pname; rev = version; - sha256 = "1wa0i6dgg6fgb7q9z33v9qmn1a1dn3ik58v1f3a49dvd5xyf8q6q"; + sha256 = "07i9pivpddgixn1wzbr15gvzf0n5pklx0gkjjaa35kvj2z8k31x5"; }; nativeBuildInputs = [ @@ -22,40 +22,19 @@ stdenv.mkDerivation rec { ninja pkgconfig python3 - vala + vala_0_40 # should be `elementary.vala` when elementary attribute set is merged wrapGAppsHook ]; buildInputs = [ discount + gnome3.defaultIconTheme # should be `elementary.defaultIconTheme`when elementary attribute set is merged + gnome3.libgee granite gtk3 gtksourceview gtkspell3 webkitgtk - gnome3.libgee - ]; - - patches = [ - # Fix build with vala 0.42 - Drop these in next release - (fetchpatch { - url = "https://github.com/lainsce/quilter/commit/a58838213cd7f2d33048c7b34b96dc8875612624.patch"; - sha256 = "1a4w1zql4zfk8scgrrssrm9n3sh5fsc1af5zvrqk8skbv7f2c80n"; - }) - (fetchpatch { - url = "https://github.com/lainsce/quilter/commit/d1800ce830343a1715bc83da3339816554896be5.patch"; - sha256 = "0xl5iz8bgx5661vbbq8qa1wkfvw9d3da67x564ckjfi05zq1vddz"; - }) - # Correct libMarkdown dependency discovery: See https://github.com/lainsce/quilter/pull/170 - (fetchpatch { - url = "https://github.com/lainsce/quilter/commit/8b1f3a60bd14cb86c1c62f9917c5f0c12bc4e459.patch"; - sha256 = "1kjc6ygf9yjvqfa4xhzxiava3338swp9wbjhpfaa3pyz3ayh188n"; - }) - # post_install script cleanups: See https://github.com/lainsce/quilter/pull/171 - (fetchpatch { - url = "https://github.com/lainsce/quilter/commit/55bf3b10cd94fcc40b0867bbdb1931a09f577922.patch"; - sha256 = "1330amichaif2qfrh4qkxwqbcpr87ipik7vzjbjdm2bv3jz9353r"; - }) ]; postPatch = '' @@ -65,9 +44,9 @@ stdenv.mkDerivation rec { meta = with stdenv.lib; { description = "Focus on your writing - designed for elementary OS"; - homepage = https://github.com/lainsce/quilter; - license = licenses.gpl2Plus; + homepage = https://github.com/lainsce/quilter; + license = licenses.gpl2Plus; maintainers = with maintainers; [ worldofpeace ]; - platforms = platforms.linux; + platforms = platforms.linux; }; } diff --git a/pkgs/applications/editors/rstudio/clang-location.patch b/pkgs/applications/editors/rstudio/clang-location.patch new file mode 100644 index 0000000000000000000000000000000000000000..402abdd85636c52fb7c247532c8d3cf78faa32d3 --- /dev/null +++ b/pkgs/applications/editors/rstudio/clang-location.patch @@ -0,0 +1,25 @@ +diff --git i/src/cpp/core/libclang/LibClang.cpp w/src/cpp/core/libclang/LibClang.cpp +index ec12a3a1ff..8c81b633ae 100644 +--- i/src/cpp/core/libclang/LibClang.cpp ++++ w/src/cpp/core/libclang/LibClang.cpp +@@ -54,7 +54,7 @@ std::vector defaultCompileArgs(LibraryVersion version) + + // we need to add in the associated libclang headers as + // they are not discovered / used by default during compilation +- FilePath llvmPath = s_libraryPath.parent().parent(); ++ FilePath llvmPath("@clang@"); + boost::format fmt("%1%/lib/clang/%2%/include"); + fmt % llvmPath.absolutePath() % version.asString(); + std::string includePath = fmt.str(); +@@ -77,10 +77,7 @@ std::vector systemClangVersions() + #elif defined(__unix__) + // default set of versions + clangVersions = { +- "/usr/lib/libclang.so", +- "/usr/lib/llvm/libclang.so", +- "/usr/lib64/libclang.so", +- "/usr/lib64/llvm/libclang.so", ++ "@libclang.so@" + }; + + // iterate through the set of available 'llvm' directories diff --git a/pkgs/applications/editors/rstudio/fix-cmake.patch b/pkgs/applications/editors/rstudio/fix-cmake.patch new file mode 100644 index 0000000000000000000000000000000000000000..3effc0eaa32b51645975969392220c3cc99fbaf3 --- /dev/null +++ b/pkgs/applications/editors/rstudio/fix-cmake.patch @@ -0,0 +1,15 @@ +diff --git a/src/cpp/desktop/CMakeLists.txt b/src/cpp/desktop/CMakeLists.txt +index f5701bf735..27af4148ff 100644 +--- a/src/cpp/desktop/CMakeLists.txt ++++ b/src/cpp/desktop/CMakeLists.txt +@@ -112,6 +112,7 @@ find_package(Qt5WebEngine REQUIRED) + find_package(Qt5WebEngineWidgets REQUIRED) + find_package(Qt5PrintSupport REQUIRED) + find_package(Qt5Quick REQUIRED) ++find_package(Qt5QuickWidgets REQUIRED) + find_package(Qt5Positioning REQUIRED) + find_package(Qt5Sensors REQUIRED) + find_package(Qt5Svg REQUIRED) +-- +2.17.1 + diff --git a/pkgs/applications/editors/rstudio/preview.nix b/pkgs/applications/editors/rstudio/preview.nix new file mode 100644 index 0000000000000000000000000000000000000000..340aeec15e0fc9ef312353b72945441f7c009f8f --- /dev/null +++ b/pkgs/applications/editors/rstudio/preview.nix @@ -0,0 +1,119 @@ +{ stdenv, fetchurl, fetchFromGitHub, makeDesktopItem, cmake, boost, zlib +, openssl, R, qtbase, qtdeclarative, qtsensors, qtwebengine, qtwebchannel +, libuuid, hunspellDicts, unzip, ant, jdk, gnumake, makeWrapper, pandoc +, llvmPackages +}: + +let + rev = "f33fb2b2f1"; + ginVer = "2.1.2"; + gwtVer = "2.8.1"; +in +stdenv.mkDerivation rec { + name = "RStudio-preview-${rev}"; + + nativeBuildInputs = [ cmake unzip ant jdk makeWrapper pandoc ]; + + buildInputs = [ boost zlib openssl R qtbase qtdeclarative qtsensors + qtwebengine qtwebchannel libuuid ]; + + src = fetchFromGitHub { + owner = "rstudio"; + repo = "rstudio"; + inherit rev; + sha256 = "0v3vzqjp74c3m4h9l6w2lrdnjqaimdjzbf7vhnlxj2qa0lwsnykb"; + }; + + # Hack RStudio to only use the input R and provided libclang. + patches = [ ./r-location.patch ./clang-location.patch ]; + postPatch = '' + substituteInPlace src/cpp/core/r_util/REnvironmentPosix.cpp --replace '@R@' ${R} + substituteInPlace src/cpp/core/libclang/LibClang.cpp \ + --replace '@clang@' ${llvmPackages.clang.cc} \ + --replace '@libclang.so@' ${llvmPackages.clang.cc.lib}/lib/libclang.so + ''; + + ginSrc = fetchurl { + url = "https://s3.amazonaws.com/rstudio-buildtools/gin-${ginVer}.zip"; + sha256 = "16jzmljravpz6p2rxa87k5f7ir8vs7ya75lnfybfajzmci0p13mr"; + }; + + gwtSrc = fetchurl { + url = "https://s3.amazonaws.com/rstudio-buildtools/gwt-${gwtVer}.zip"; + sha256 = "19x000m3jwnkqgi6ic81lkzyjvvxcfacw2j0vcfcaknvvagzhyhb"; + }; + + hunspellDictionaries = with stdenv.lib; filter isDerivation (attrValues hunspellDicts); + + mathJaxSrc = fetchurl { + url = https://s3.amazonaws.com/rstudio-buildtools/mathjax-26.zip; + sha256 = "0wbcqb9rbfqqvvhqr1pbqax75wp8ydqdyhp91fbqfqp26xzjv6lk"; + }; + + rsconnectSrc = fetchFromGitHub { + owner = "rstudio"; + repo = "rsconnect"; + rev = "984745d8"; + sha256 = "037z0y32k1gdda192y5qn5hi7wp8wyap44mkjlklrgcqkmlcylb9"; + }; + + preConfigure = + '' + GWT_LIB_DIR=src/gwt/lib + + mkdir -p $GWT_LIB_DIR/gin/${ginVer} + unzip ${ginSrc} -d $GWT_LIB_DIR/gin/${ginVer} + + unzip ${gwtSrc} + mkdir -p $GWT_LIB_DIR/gwt + mv gwt-${gwtVer} $GWT_LIB_DIR/gwt/${gwtVer} + + mkdir dependencies/common/dictionaries + for dict in ${builtins.concatStringsSep " " hunspellDictionaries}; do + for i in "$dict/share/hunspell/"*; do + ln -sv $i dependencies/common/dictionaries/ + done + done + + unzip ${mathJaxSrc} -d dependencies/common/mathjax-26 + + mkdir -p dependencies/common/pandoc + cp ${pandoc}/bin/pandoc dependencies/common/pandoc/ + + cp -r ${rsconnectSrc} dependencies/common/rsconnect + pushd dependencies/common + ${R}/bin/R CMD build -d --no-build-vignettes rsconnect + popd + ''; + + enableParallelBuilding = true; + + cmakeFlags = [ "-DRSTUDIO_TARGET=Desktop" "-DQT_QMAKE_EXECUTABLE=$NIX_QT5_TMP/bin/qmake" ]; + + desktopItem = makeDesktopItem { + name = name; + exec = "rstudio %F"; + icon = "rstudio"; + desktopName = "RStudio Preview"; + genericName = "IDE"; + comment = meta.description; + categories = "Development;"; + mimeType = "text/x-r-source;text/x-r;text/x-R;text/x-r-doc;text/x-r-sweave;text/x-r-markdown;text/x-r-html;text/x-r-presentation;application/x-r-data;application/x-r-project;text/x-r-history;text/x-r-profile;text/x-tex;text/x-markdown;text/html;text/css;text/javascript;text/x-chdr;text/x-csrc;text/x-c++hdr;text/x-c++src;"; + }; + + postInstall = '' + wrapProgram $out/bin/rstudio --suffix PATH : ${gnumake}/bin + mkdir $out/share + cp -r ${desktopItem}/share/applications $out/share + mkdir $out/share/icons + ln $out/rstudio.png $out/share/icons + ''; + + meta = with stdenv.lib; + { description = "Set of integrated tools for the R language"; + homepage = https://www.rstudio.com/; + license = licenses.agpl3; + maintainers = with maintainers; [ averelld ]; + platforms = platforms.linux; + }; +} diff --git a/pkgs/applications/editors/standardnotes/default.nix b/pkgs/applications/editors/standardnotes/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..d9bca53094898757d198260480d32a96c6f122f5 --- /dev/null +++ b/pkgs/applications/editors/standardnotes/default.nix @@ -0,0 +1,48 @@ +{ stdenv, appimage-run, fetchurl }: + +let + version = "2.3.12"; + + plat = { + "i386-linux" = "i386"; + "x86_64-linux" = "x86_64"; + }.${stdenv.hostPlatform.system}; + + sha256 = { + "i386-linux" = "0q7izk20r14kxn3n4pn92jgnynfnlnylg55brz8n1lqxc0dc3v24"; + "x86_64-linux" = "0myg4qv0vrwh8s9sckb12ld9f86ymx4yypvpy0w5qn1bxk5hbafc"; + }.${stdenv.hostPlatform.system}; +in + +stdenv.mkDerivation rec { + name = "standardnotes-${version}"; + + src = fetchurl { + url = "https://github.com/standardnotes/desktop/releases/download/v${version}/standard-notes-${version}-${plat}.AppImage"; + inherit sha256; + }; + + buildInputs = [ appimage-run ]; + + unpackPhase = ":"; + + installPhase = '' + mkdir -p $out/{bin,share} + cp $src $out/share/standardNotes.AppImage + echo "#!/bin/sh" > $out/bin/standardnotes + echo "${appimage-run}/bin/appimage-run $out/share/standardNotes.AppImage" >> $out/bin/standardnotes + chmod +x $out/bin/standardnotes $out/share/standardNotes.AppImage + ''; + + meta = with stdenv.lib; { + description = "A simple and private notes app"; + longDescription = '' + Standard Notes is a private notes app that features unmatched simplicity, + end-to-end encryption, powerful extensions, and open-source applications. + ''; + homepage = https://standardnotes.org; + license = licenses.agpl3; + maintainers = with maintainers; [ mgregoire ]; + platforms = [ "i386-linux" "x86_64-linux" ]; + }; +} diff --git a/pkgs/applications/editors/texmaker/default.nix b/pkgs/applications/editors/texmaker/default.nix index c5f691e95c2470055f062464c3f7fdb9c3487308..036bd8e546c4b45ff076dc9eee409bfb52928f85 100644 --- a/pkgs/applications/editors/texmaker/default.nix +++ b/pkgs/applications/editors/texmaker/default.nix @@ -2,12 +2,12 @@ stdenv.mkDerivation rec { pname = "texmaker"; - version = "5.0.2"; + version = "5.0.3"; name = "${pname}-${version}"; src = fetchurl { url = "http://www.xm1math.net/texmaker/${name}.tar.bz2"; - sha256 = "0y81mjm89b99pr9svcwpaf4iz2q9pc9hjas5kiwd1pbgl5vqskm9"; + sha256 = "0vrj9w5lk3vf6138n5bz8phmy3xp5kv4dq1rgirghcf4hbxdyx30"; }; buildInputs = [ qtbase qtscript poppler zlib ]; diff --git a/pkgs/applications/editors/vim/default.nix b/pkgs/applications/editors/vim/default.nix index 26cd61d182bd158f8b27d69c3d287ba9ff9322c8..2f34a6ddeb6b975d174465da8a5cbc8d9ec2da9c 100644 --- a/pkgs/applications/editors/vim/default.nix +++ b/pkgs/applications/editors/vim/default.nix @@ -6,7 +6,7 @@ sha256 = "18ifhv5q9prd175q3vxbqf6qyvkk6bc7d2lhqdk0q78i68kv9y0c"; } # apple frameworks -, Carbon, Cocoa +, cf-private, Carbon, Cocoa }: let @@ -19,7 +19,11 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ gettext pkgconfig ]; buildInputs = [ ncurses ] - ++ stdenv.lib.optionals stdenv.hostPlatform.isDarwin [ Carbon Cocoa ]; + ++ stdenv.lib.optionals stdenv.hostPlatform.isDarwin [ + Carbon Cocoa + # Needed for OBJC_CLASS_$_NSArray symbols. + cf-private + ]; configureFlags = [ "--enable-multibyte" diff --git a/pkgs/applications/graphics/feh/default.nix b/pkgs/applications/graphics/feh/default.nix index bbc533d37e84f17335d023653b813af2d6e0000d..5146919fde6cbeda87c8e57aeb522a2e2e61c4c2 100644 --- a/pkgs/applications/graphics/feh/default.nix +++ b/pkgs/applications/graphics/feh/default.nix @@ -6,11 +6,11 @@ with stdenv.lib; stdenv.mkDerivation rec { name = "feh-${version}"; - version = "2.28"; + version = "2.28.1"; src = fetchurl { url = "https://feh.finalrewind.org/${name}.tar.bz2"; - sha256 = "1nfka7w6pzj2bbwx8vydr2wwm7z8mrbqiy1xrq97c1g5bxy2vlhk"; + sha256 = "0wian0gnx0yfxf8x9b8wr57fjd6rnmi3y3xj83ni6x0xqrjnf1lp"; }; outputs = [ "out" "man" "doc" ]; diff --git a/pkgs/applications/graphics/gimp/default.nix b/pkgs/applications/graphics/gimp/default.nix index 15033b8b2b09d86d2ca8a6203fb4a71ce07d250d..201ebf7b2984089a89bd8a4304cdccf18d44bb21 100644 --- a/pkgs/applications/graphics/gimp/default.nix +++ b/pkgs/applications/graphics/gimp/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchurl, pkgconfig, intltool, babl, gegl, gtk2, glib, gdk_pixbuf, isocodes +{ stdenv, fetchurl, substituteAll, pkgconfig, intltool, babl, gegl, gtk2, glib, gdk_pixbuf, isocodes , pango, cairo, freetype, fontconfig, lcms, libpng, libjpeg, poppler, poppler_data, libtiff , libmng, librsvg, libwmf, zlib, libzip, ghostscript, aalib, shared-mime-info , python2Packages, libexif, gettext, xorg, glib-networking, libmypaint, gexiv2 @@ -9,11 +9,11 @@ let inherit (python2Packages) pygtk wrapPython python; in stdenv.mkDerivation rec { name = "gimp-${version}"; - version = "2.10.6"; + version = "2.10.8"; src = fetchurl { url = "http://download.gimp.org/pub/gimp/v${stdenv.lib.versions.majorMinor version}/${name}.tar.bz2"; - sha256 = "07qh2ljbza2mph1gh8sicn27qihhj8hx3ivvry2874cfh8ghgj2f"; + sha256 = "16sb4kslwin2jbgdb4nhks78pd0af8mvj8g5hap3hj946p7w2jfq"; }; nativeBuildInputs = [ pkgconfig intltool gettext wrapPython ]; @@ -36,6 +36,15 @@ in stdenv.mkDerivation rec { export GIO_EXTRA_MODULES="${glib-networking}/lib/gio/modules:$GIO_EXTRA_MODULES" ''; + patches = [ + # to remove compiler from the runtime closure, reference was retained via + # gimp --version --verbose output + (substituteAll { + src = ./remove-cc-reference.patch; + cc_version = stdenv.cc.cc.name; + }) + ]; + postFixup = '' wrapPythonProgramsIn $out/lib/gimp/${passthru.majorVersion}/plug-ins/ wrapProgram $out/bin/gimp-${stdenv.lib.versions.majorMinor version} \ diff --git a/pkgs/applications/graphics/gimp/remove-cc-reference.patch b/pkgs/applications/graphics/gimp/remove-cc-reference.patch new file mode 100644 index 0000000000000000000000000000000000000000..0d6a87000ccdc511df5787ca5555cff5921519e4 --- /dev/null +++ b/pkgs/applications/graphics/gimp/remove-cc-reference.patch @@ -0,0 +1,13 @@ +diff --git a/app/gimp-version.c b/app/gimp-version.c +index 12605c6..a9083da 100644 +--- a/app/gimp-version.c ++++ b/app/gimp-version.c +@@ -203,7 +203,7 @@ gimp_version (gboolean be_verbose, + lib_versions = gimp_library_versions (localized); + verbose_info = g_strdup_printf ("git-describe: %s\n" + "C compiler:\n%s\n%s", +- GIMP_GIT_VERSION, CC_VERSION, ++ GIMP_GIT_VERSION, "@cc_version@", + lib_versions); + g_free (lib_versions); + diff --git a/pkgs/applications/graphics/gocr/default.nix b/pkgs/applications/graphics/gocr/default.nix index 78772a63dfe3192e4c83c6b4cc31676a1484a4f6..f5fa8ca9221dd86d3c5f2cec3c77fb5003cfc4fc 100644 --- a/pkgs/applications/graphics/gocr/default.nix +++ b/pkgs/applications/graphics/gocr/default.nix @@ -1,11 +1,11 @@ { stdenv, fetchurl, tk }: stdenv.mkDerivation rec { - name = "gocr-0.51"; + name = "gocr-0.52"; src = fetchurl { url = "https://www-e.uni-magdeburg.de/jschulen/ocr/${name}.tar.gz"; - sha256 = "14i6zi6q11h6d0qds2cpvgvhbxk5xaa027h8cd0wy1zblh7sxckf"; + sha256 = "11l6gds1lrm8lwrrsxnm5fjlwz8q1xbh896cprrl4psz21in946z"; }; buildFlags = [ "all" "libs" ]; diff --git a/pkgs/applications/graphics/krop/default.nix b/pkgs/applications/graphics/krop/default.nix index 2858086e0d643b56dff55875313dad122971d3bc..c4c889cdba526477b334aee726b3ac1a6721db74 100644 --- a/pkgs/applications/graphics/krop/default.nix +++ b/pkgs/applications/graphics/krop/default.nix @@ -2,13 +2,13 @@ python3Packages.buildPythonApplication rec { pname = "krop"; - version = "0.5.0"; + version = "0.5.1"; src = fetchFromGitHub { owner = "arminstraub"; repo = pname; rev = "v${version}"; - sha256 = "0y8z9xr10wbzmi1dg1zpcsf3ihnxrnvlaf72821x3390s3qsnydf"; + sha256 = "0b1zqpks4vzq7sfhf7r9qrshr77f1ncj18x7d0fa3g29rxa42dcr"; }; propagatedBuildInputs = with python3Packages; [ diff --git a/pkgs/applications/graphics/openimageio/default.nix b/pkgs/applications/graphics/openimageio/default.nix index 1980f470435b49774dc4db11cb80f9ae8c72da0a..f405ca01200d984509d0235d7ee3c347c51a96ee 100644 --- a/pkgs/applications/graphics/openimageio/default.nix +++ b/pkgs/applications/graphics/openimageio/default.nix @@ -4,13 +4,13 @@ stdenv.mkDerivation rec { name = "openimageio-${version}"; - version = "1.8.15"; + version = "1.8.16"; src = fetchFromGitHub { owner = "OpenImageIO"; repo = "oiio"; rev = "Release-${version}"; - sha256 = "0fbl5rzmip5q155lfsr07n65dnhww1kw97masps1i1x40gq15czx"; + sha256 = "0isx137c6anvs1xfxi0z35v1cw855xvnq2ca0pakqqpdh0yivrps"; }; outputs = [ "bin" "out" "dev" "doc" ]; diff --git a/pkgs/applications/graphics/phototonic/default.nix b/pkgs/applications/graphics/phototonic/default.nix index ce300eaf9f6de77f84c03b5e458f23dcd5bc8d5c..7da1d4b612f9263f419e850fd7f8c9171e5dcd42 100644 --- a/pkgs/applications/graphics/phototonic/default.nix +++ b/pkgs/applications/graphics/phototonic/default.nix @@ -2,15 +2,13 @@ stdenv.mkDerivation rec { name = "phototonic-${version}"; - version = "1.7.1"; + version = "2.1"; src = fetchFromGitHub { repo = "phototonic"; owner = "oferkv"; - # There is currently no tag for 1.7.1 see - # https://github.com/oferkv/phototonic/issues/214 - rev = "c37070e4a068570d34ece8de1e48aa0882c80c5b"; - sha256 = "1agd3bsrpljd019qrjvlbim5l0bhpx53dhpc0gvyn0wmcdzn92gj"; + rev = "v${version}"; + sha256 = "0csidmxl1sfmn6gq81vn9f9jckb4swz3sgngnwqa4f75lr6604h7"; }; buildInputs = [ qtbase exiv2 ]; diff --git a/pkgs/applications/graphics/rapid-photo-downloader/default.nix b/pkgs/applications/graphics/rapid-photo-downloader/default.nix index d4edbae1d28eff5e9898360e8bc682280f21d6bd..59d6fec45dae48eed540e74fd376d68c9582f7bc 100644 --- a/pkgs/applications/graphics/rapid-photo-downloader/default.nix +++ b/pkgs/applications/graphics/rapid-photo-downloader/default.nix @@ -6,11 +6,11 @@ python3Packages.buildPythonApplication rec { pname = "rapid-photo-downloader"; - version = "0.9.12"; + version = "0.9.13"; src = fetchurl { url = "https://launchpad.net/rapid/pyqt/${version}/+download/${pname}-${version}.tar.gz"; - sha256 = "0nzahps7hs120xv2r55k293kialf83nx44x3jg85yh349rpqrii8"; + sha256 = "1517w18sxil1gwd78jjbbixcd1b0sp05imnnd5h5lr8wl3f0szj0"; }; # Disable version check and fix install tests diff --git a/pkgs/applications/graphics/shutter/default.nix b/pkgs/applications/graphics/shutter/default.nix index a409060afdc680307c3ed3a43fd8fd4e264e7168..7e7bf644ce794825b670102fc765e6d740fc9267 100644 --- a/pkgs/applications/graphics/shutter/default.nix +++ b/pkgs/applications/graphics/shutter/default.nix @@ -1,27 +1,28 @@ { stdenv, fetchurl, perl, perlPackages, makeWrapper, imagemagick, gdk_pixbuf, librsvg -, hicolor-icon-theme +, hicolor-icon-theme, procps }: let perlModules = with perlPackages; [ Gnome2 Gnome2Canvas Gtk2 Glib Pango Gnome2VFS Gnome2Wnck Gtk2ImageView - Gtk2Unique FileWhich FileCopyRecursive XMLSimple NetDBus XMLTwig + Gtk2Unique FileBaseDir FileWhich FileCopyRecursive XMLSimple NetDBus XMLTwig XMLParser HTTPMessage ProcSimple SortNaturally LocaleGettext ProcProcessTable URI ImageExifTool Gtk2AppIndicator LWP JSON - PerlMagick WWWMechanize HTTPDate HTMLForm HTMLParser HTMLTagset JSONXS + PerlMagick WWWMechanize HTTPDate HTMLForm HTMLParser HTMLTagset JSONMaybeXS commonsense HTTPCookies NetOAuth PathClass GooCanvas X11Protocol Cairo EncodeLocale TryTiny TypesSerialiser LWPMediaTypes ]; in stdenv.mkDerivation rec { - name = "shutter-0.94"; + name = "shutter-0.94.2"; src = fetchurl { - url = "https://launchpad.net/shutter/0.9x/0.94/+download/shutter-0.94.tar.gz"; - sha256 = "943152cdf9e1b2096d38e3da9622d8bf97956a08eda747c3e7fcc564a3f0f40d"; + url = "https://launchpad.net/shutter/0.9x/0.94.2/+download/shutter-0.94.2.tar.gz"; + sha256 = "0mas7npm935j4rhqqjn226822s9sa4bsxrkp0b5fjj3z096k6vw0"; }; - buildInputs = [ perl makeWrapper gdk_pixbuf librsvg ] ++ perlModules; + nativeBuildInputs = [ makeWrapper ]; + buildInputs = [ perl procps gdk_pixbuf librsvg ] ++ perlModules; installPhase = '' mkdir -p "$out" diff --git a/pkgs/applications/graphics/yacreader/default.nix b/pkgs/applications/graphics/yacreader/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..3cf42343658c8faa2b1be93885b2ee3ceb580287 --- /dev/null +++ b/pkgs/applications/graphics/yacreader/default.nix @@ -0,0 +1,25 @@ +{ stdenv, fetchurl, qmake, poppler, pkgconfig, libunarr, libGLU +, qtdeclarative, qtgraphicaleffects, qtmultimedia, qtquickcontrols, qtscript +}: + +stdenv.mkDerivation rec { + name = "yacreader-${version}"; + version = "9.5.0"; + + src = fetchurl { + url = "https://github.com/YACReader/yacreader/releases/download/${version}/${name}-src.tar.xz"; + sha256 = "0cv5y76kjvsqsv4fp99j8np5pm4m76868i1nn40q6hy573dmxwm6"; + }; + + nativeBuildInputs = [ qmake pkgconfig ]; + buildInputs = [ poppler libunarr libGLU qtmultimedia qtscript ]; + propagatedBuildInputs = [ qtquickcontrols qtgraphicaleffects qtdeclarative ]; + + enableParallelBuilding = true; + + meta = { + description = "A comic reader for cross-platform reading and managing your digital comic collection"; + homepage = http://www.yacreader.com; + license = stdenv.lib.licenses.gpl3; + }; +} diff --git a/pkgs/applications/kde/default.nix b/pkgs/applications/kde/default.nix index 072b66e556386deb092b7a10533fe454f07c9ba1..16c3a47431c9a4206087f9b6ce74f6d572c36c99 100644 --- a/pkgs/applications/kde/default.nix +++ b/pkgs/applications/kde/default.nix @@ -129,6 +129,7 @@ let kontact = callPackage ./kontact.nix {}; kontactinterface = callPackage ./kontactinterface.nix {}; konquest = callPackage ./konquest.nix {}; + konqueror = callPackage ./konqueror.nix {}; korganizer = callPackage ./korganizer.nix {}; kpimtextedit = callPackage ./kpimtextedit.nix {}; ksmtp = callPackage ./ksmtp {}; diff --git a/pkgs/applications/kde/konqueror.nix b/pkgs/applications/kde/konqueror.nix new file mode 100644 index 0000000000000000000000000000000000000000..e6442fea2f9dce055662ddaaa4cbd5c81a813345 --- /dev/null +++ b/pkgs/applications/kde/konqueror.nix @@ -0,0 +1,20 @@ +{ lib +, mkDerivation +, extra-cmake-modules, kdoctools +, kdelibs4support, kcmutils, khtml, kdesu +, qtwebkit, qtwebengine, qtx11extras, qtscript, qtwayland +}: + +mkDerivation { + name = "konqueror"; + nativeBuildInputs = [ extra-cmake-modules kdoctools ]; + buildInputs = [ + kdelibs4support kcmutils khtml kdesu + qtwebkit qtwebengine qtx11extras qtscript qtwayland + ]; + meta = { + license = with lib.licenses; [ gpl2 ]; + maintainers = with lib.maintainers; [ ]; + }; +} + diff --git a/pkgs/applications/misc/1password/default.nix b/pkgs/applications/misc/1password/default.nix index 331f516c88ceb00a3f2b39c607fcd03a95486251..a25d40e29bd0899d90ee510cf14152a0125472a8 100644 --- a/pkgs/applications/misc/1password/default.nix +++ b/pkgs/applications/misc/1password/default.nix @@ -2,24 +2,24 @@ stdenv.mkDerivation rec { name = "1password-${version}"; - version = "0.5.3"; + version = "0.5.4"; src = if stdenv.hostPlatform.system == "i686-linux" then fetchzip { url = "https://cache.agilebits.com/dist/1P/op/pkg/v${version}/op_linux_386_v${version}.zip"; - sha256 = "05s223h1yps4k9kmignl0r5sbh6w7m1hnlmafnf1kiwv7gacvxjc"; + sha256 = "0wni2hk5b1qfr24vi24jiprpi08k3qgaw9lqp61k41a1sjp3izv0"; stripRoot = false; } else if stdenv.hostPlatform.system == "x86_64-linux" then fetchzip { url = "https://cache.agilebits.com/dist/1P/op/pkg/v${version}/op_linux_amd64_v${version}.zip"; - sha256 = "0p9x1fx0309v8dxxaf88m8x8q15zzqywfmjn6v5wb9v3scp9396v"; + sha256 = "169d5fl3cfw3xrlpm9nlmwbnp0xgh0la9qybzf8ragp0020nlyih"; stripRoot = false; } else if stdenv.hostPlatform.system == "x86_64-darwin" then fetchzip { url = "https://cache.agilebits.com/dist/1P/op/pkg/v${version}/op_darwin_amd64_v${version}.zip"; - sha256 = "1z2xp9bn93gr4ha6zx65va1fb58a2xlnnmpv583y96gq3vbnqdcj"; + sha256 = "1scikv7v33kzg9rqsrz97yklxaskvif84br13zg8annm43k5vlma"; stripRoot = false; } else throw "Architecture not supported"; diff --git a/pkgs/applications/misc/alacritty/default.nix b/pkgs/applications/misc/alacritty/default.nix index e4dffa98f39a4aaf65fd160da633f4e22b3a0bed..4b8657c55c9ab4db832c0dae544d581316f8c80b 100644 --- a/pkgs/applications/misc/alacritty/default.nix +++ b/pkgs/applications/misc/alacritty/default.nix @@ -18,6 +18,7 @@ libGL, xclip, # Darwin Frameworks + cf-private, AppKit, CoreFoundation, CoreGraphics, @@ -40,27 +41,18 @@ let libGL libXi ]; - darwinFrameworks = [ - AppKit - CoreFoundation - CoreGraphics - CoreServices - CoreText - Foundation - OpenGL - ]; in buildRustPackage rec { - name = "alacritty-unstable-${version}"; - version = "0.2.1"; + name = "alacritty-${version}"; + version = "0.2.3"; src = fetchFromGitHub { owner = "jwilm"; repo = "alacritty"; rev = "v${version}"; - sha256 = "1402axwjz70gg6ylhhm82f1rl6xvxkr1qy0jx3r4r32vzfap1l67"; + sha256 = "0p9q5cpxw5v2ka1ylaa009sfbncnlrva9yam4hag6npcnd8x4f95"; }; - cargoSha256 = "0slcyn77svj0686g1vk7kgndzirpkba9jwwybgsdl755r53dswk0"; + cargoSha256 = "0664fi16kyly8hhfj0hgddsnfdk3y0z31758gvb0xq13ssdb6sv6"; nativeBuildInputs = [ cmake @@ -71,9 +63,16 @@ in buildRustPackage rec { ]; buildInputs = rpathLibs - ++ lib.optionals stdenv.isDarwin darwinFrameworks; + ++ lib.optionals stdenv.isDarwin [ + AppKit CoreFoundation CoreGraphics CoreServices CoreText Foundation OpenGL + # Needed for CFURLResourceIsReachable symbols. + cf-private + ]; + + outputs = [ "out" "terminfo" ]; - outputs = [ "out" "terminfo" ]; + # https://github.com/NixOS/nixpkgs/issues/49693 + doCheck = !stdenv.isDarwin; postPatch = '' substituteInPlace copypasta/src/x11.rs \ diff --git a/pkgs/applications/misc/albert/default.nix b/pkgs/applications/misc/albert/default.nix index f16144f3befa52b06718e73c2149121418b21279..d1a62dad6c9fe15fd2f1eb4c90b6aaff5310a070 100644 --- a/pkgs/applications/misc/albert/default.nix +++ b/pkgs/applications/misc/albert/default.nix @@ -3,7 +3,7 @@ let pname = "albert"; - version = "0.14.21"; + version = "0.14.22"; in mkDerivation rec { name = "${pname}-${version}"; @@ -12,7 +12,7 @@ mkDerivation rec { owner = "albertlauncher"; repo = "albert"; rev = "v${version}"; - sha256 = "16nk9krn1mwr0bh57viig9hizqyp3slna0qg7s5a736nsfxy226w"; + sha256 = "0i9kss5szirmd0pzw3cm692kl9rhkan1zfywfqrjdf3i3b6914sg"; fetchSubmodules = true; }; @@ -48,7 +48,7 @@ mkDerivation rec { homepage = https://albertlauncher.github.io/; description = "Desktop agnostic launcher"; license = licenses.gpl3Plus; - maintainers = with maintainers; [ ericsagnes ]; + maintainers = with maintainers; [ ericsagnes synthetica ]; platforms = platforms.linux; }; } diff --git a/pkgs/applications/misc/archiver/default.nix b/pkgs/applications/misc/archiver/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..25fafb604c3358233b7fb58fca019d7d97ff6154 --- /dev/null +++ b/pkgs/applications/misc/archiver/default.nix @@ -0,0 +1,28 @@ +{ buildGoPackage +, fetchFromGitHub +, lib +}: + +buildGoPackage rec { + name = "archiver-${version}"; + version = "3.0.0"; + + goPackagePath = "github.com/mholt/archiver"; + + src = fetchFromGitHub { + owner = "mholt"; + repo = "archiver"; + rev = "v${version}"; + sha256 = "1wngv51333h907mp6nbzd9dq6r0x06mag2cij92912jcbzy0q8bk"; + }; + + goDeps = ./deps.nix; + + meta = with lib; { + description = "Easily create and extract .zip, .tar, .tar.gz, .tar.bz2, .tar.xz, .tar.lz4, .tar.sz, and .rar (extract-only) files with Go"; + homepage = https://github.com/mholt/archiver; + license = licenses.mit; + maintainers = with maintainers; [ kalbasit ]; + platforms = platforms.all; + }; +} diff --git a/pkgs/applications/misc/archiver/deps.nix b/pkgs/applications/misc/archiver/deps.nix new file mode 100644 index 0000000000000000000000000000000000000000..4b14fd47711ba2b5d6a215a39099f01d9e8f7cd2 --- /dev/null +++ b/pkgs/applications/misc/archiver/deps.nix @@ -0,0 +1,56 @@ +[ + { + goPackagePath = "github.com/dsnet/compress"; + fetch = { + type = "git"; + url = "https://github.com/dsnet/compress"; + rev = "cc9eb1d7ad760af14e8f918698f745e80377af4f"; + sha256 = "159liclywmyb6zx88ga5gn42hfl4cpk1660zss87fkx31hdq9fgx"; + }; + } + { + goPackagePath = "github.com/golang/snappy"; + fetch = { + type = "git"; + url = "https://github.com/golang/snappy"; + rev = "2e65f85255dbc3072edf28d6b5b8efc472979f5a"; + sha256 = "05w6mpc4qcy0pv8a2bzng8nf4s5rf5phfang4jwy9rgf808q0nxf"; + }; + } + { + goPackagePath = "github.com/nwaples/rardecode"; + fetch = { + type = "git"; + url = "https://github.com/nwaples/rardecode"; + rev = "197ef08ef68c4454ae5970a9c2692d6056ceb8d7"; + sha256 = "0vvijw7va283dbdvnf4bgkn7bjngxqzk1rzdpy8sl343r62bmh4g"; + }; + } + { + goPackagePath = "github.com/pierrec/lz4"; + fetch = { + type = "git"; + url = "https://github.com/pierrec/lz4"; + rev = "623b5a2f4d2a41e411730dcdfbfdaeb5c0c4564e"; + sha256 = "1hhf7vyz5irrqs7ixdmvsvzmy9izv3ha8jbyy0cs486h61nzqkki"; + }; + } + { + goPackagePath = "github.com/ulikunitz/xz"; + fetch = { + type = "git"; + url = "https://github.com/ulikunitz/xz"; + rev = "590df8077fbcb06ad62d7714da06c00e5dd2316d"; + sha256 = "07mivr4aiw3b8qzwajsxyjlpbkf3my4xx23lv0yryc4pciam5lhy"; + }; + } + { + goPackagePath = "github.com/xi2/xz"; + fetch = { + type = "git"; + url = "https://github.com/xi2/xz"; + rev = "48954b6210f8d154cb5f8484d3a3e1f83489309e"; + sha256 = "178r0fa2dpzxf0sabs7dn0c8fa7vs87zlxk6spkn374ls9pir7nq"; + }; + } +] diff --git a/pkgs/applications/misc/avrdudess/default.nix b/pkgs/applications/misc/avrdudess/default.nix index c803eb37ad6f655c2ec3084c5bc914de8cb44f22..1144d5152847374c3c0dde441211bace6bcaafaa 100644 --- a/pkgs/applications/misc/avrdudess/default.nix +++ b/pkgs/applications/misc/avrdudess/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchurl, unzip, mono, avrbinutils, avrgcc, avrdude, gtk2, xdg_utils }: +{ stdenv, fetchurl, unzip, mono, avrdude, gtk2, xdg_utils }: stdenv.mkDerivation rec { name = "avrdudess-2.2.20140102"; @@ -23,7 +23,7 @@ stdenv.mkDerivation rec { export LD_LIBRARY_PATH="${stdenv.lib.makeLibraryPath [gtk2 mono]}" # We need PATH from user env for xdg-open to find its tools, which # typically depend on the currently running desktop environment. - export PATH="${stdenv.lib.makeBinPath [ avrgcc avrbinutils avrdude xdg_utils ]}:\$PATH" + export PATH="${stdenv.lib.makeBinPath [ avrdude xdg_utils ]}:\$PATH" # avrdudess must have its resource files in its current working directory cd $out/avrdudess && exec ${mono}/bin/mono "$out/avrdudess/avrdudess.exe" "\$@" diff --git a/pkgs/applications/misc/calibre/default.nix b/pkgs/applications/misc/calibre/default.nix index 1ad236f0d13fa3f023b62f1d0eabfd1decbbb6b8..3554c36f5194591ced31d5ca7db5c552acbe5628 100644 --- a/pkgs/applications/misc/calibre/default.nix +++ b/pkgs/applications/misc/calibre/default.nix @@ -1,7 +1,7 @@ { stdenv, fetchurl, poppler_utils, pkgconfig, libpng , imagemagick, libjpeg, fontconfig, podofo, qtbase, qmake, icu, sqlite , makeWrapper, unrarSupport ? false, chmlib, python2Packages, libusb1, libmtp -, xdg_utils, makeDesktopItem, wrapGAppsHook +, xdg_utils, makeDesktopItem, wrapGAppsHook, removeReferencesTo }: stdenv.mkDerivation rec { @@ -35,7 +35,7 @@ stdenv.mkDerivation rec { enableParallelBuilding = true; - nativeBuildInputs = [ makeWrapper pkgconfig qmake ]; + nativeBuildInputs = [ makeWrapper pkgconfig qmake removeReferencesTo ]; buildInputs = [ poppler_utils libpng imagemagick libjpeg @@ -58,8 +58,8 @@ stdenv.mkDerivation rec { export MAGICK_LIB=${imagemagick.out}/lib export FC_INC_DIR=${fontconfig.dev}/include/fontconfig export FC_LIB_DIR=${fontconfig.lib}/lib - export PODOFO_INC_DIR=${podofo}/include/podofo - export PODOFO_LIB_DIR=${podofo}/lib + export PODOFO_INC_DIR=${podofo.dev}/include/podofo + export PODOFO_LIB_DIR=${podofo.lib}/lib export SIP_BIN=${python2Packages.sip}/bin/sip ${python2Packages.python.interpreter} setup.py install --prefix=$out @@ -88,6 +88,15 @@ stdenv.mkDerivation rec { runHook postInstall ''; + # Remove some references to shrink the closure size. This reference (as of + # 2018-11-06) was a single string like the following: + # /nix/store/xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx-podofo-0.9.6-dev/include/podofo/base/PdfVariant.h + preFixup = '' + remove-references-to -t ${podofo.dev} $out/lib/calibre/calibre/plugins/podofo.so + ''; + + disallowedReferences = [ podofo.dev ]; + calibreDesktopItem = makeDesktopItem { name = "calibre"; desktopName = "calibre"; diff --git a/pkgs/applications/misc/cheat/default.nix b/pkgs/applications/misc/cheat/default.nix index ad3f653465938fd87b821c1fa788bf38d11e586b..1a162aca0d76a5cecbace1d18e98d415bb567a76 100644 --- a/pkgs/applications/misc/cheat/default.nix +++ b/pkgs/applications/misc/cheat/default.nix @@ -4,7 +4,7 @@ with python3Packages; buildPythonApplication rec { name = "${pname}-${version}"; pname = "cheat"; - version = "2.2.3"; + version = "2.3.1"; propagatedBuildInputs = [ docopt pygments ]; @@ -12,7 +12,7 @@ buildPythonApplication rec { owner = "chrisallenlane"; repo = "cheat"; rev = version; - sha256 = "1p9a54fax3b1ilqcwdlccy08ww3igwsyzcyikqivaxj5p6mqq6wl"; + sha256 = "1dcpjvbv648r8325qjf30m8b4cyrrjbzc2kvh40zy2mbjsa755zr"; }; # no tests available doCheck = false; diff --git a/pkgs/applications/misc/chirp/default.nix b/pkgs/applications/misc/chirp/default.nix index 4f594d5d4c05af329ceedc714e0db5b3e04fc756..db67514cd07786119b62b176b01c5cfde796267c 100644 --- a/pkgs/applications/misc/chirp/default.nix +++ b/pkgs/applications/misc/chirp/default.nix @@ -3,11 +3,11 @@ stdenv.mkDerivation rec { name = "chirp-daily-${version}"; - version = "20181009"; + version = "20181018"; src = fetchurl { url = "https://trac.chirp.danplanet.com/chirp_daily/daily-${version}/${name}.tar.gz"; - sha256 = "1h7i8skdjkz7n6dz3q9pzg1k31nh1ivy2mx3864bjvpkc7m6yyd9"; + sha256 = "0jd7xi6q09b3djn1k7pj1sbqvw24kn7dcp9r6abvxily4pc1xhdr"; }; nativeBuildInputs = [ makeWrapper ]; diff --git a/pkgs/applications/misc/copyq/default.nix b/pkgs/applications/misc/copyq/default.nix index 39a87314ca7bb4e0bfc4b31620720b86e0d19fa1..e05e140048b90f71abf76fe9f9a8c1e73132108e 100644 --- a/pkgs/applications/misc/copyq/default.nix +++ b/pkgs/applications/misc/copyq/default.nix @@ -5,13 +5,13 @@ stdenv.mkDerivation rec { name = "CopyQ-${version}"; - version = "3.6.1"; + version = "3.7.0"; src = fetchFromGitHub { owner = "hluk"; repo = "CopyQ"; rev = "v${version}"; - sha256 = "0drhafnr1d595wa8zwvmgmrrqb86navdk4iw6ly6gmh0i800wz0z"; + sha256 = "1dm02l1ry7ndn283774nzmg89wy1933f4iyf6n02p152zgx4llyf"; }; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/applications/misc/dbeaver/default.nix b/pkgs/applications/misc/dbeaver/default.nix index 412a2e9d4fd0b3dbcb0a0cfd02d2c5148588127f..f7c1990ef3c86926684ebd182f1c654b503f3cda 100644 --- a/pkgs/applications/misc/dbeaver/default.nix +++ b/pkgs/applications/misc/dbeaver/default.nix @@ -7,7 +7,7 @@ stdenv.mkDerivation rec { name = "dbeaver-ce-${version}"; - version = "5.2.2"; + version = "5.2.4"; desktopItem = makeDesktopItem { name = "dbeaver"; @@ -30,7 +30,7 @@ stdenv.mkDerivation rec { src = fetchurl { url = "https://dbeaver.io/files/${version}/dbeaver-ce-${version}-linux.gtk.x86_64.tar.gz"; - sha256 = "1rrj0c7ksvv9irsz9hb4ip30qgmzps4dy1nj4vl8mzzf389xa43n"; + sha256 = "1zwbqr5s76r77x7klydpqbaqakzzilzv92ddyck1sj5jiy5prwpp"; }; installPhase = '' diff --git a/pkgs/applications/misc/dmrconfig/default.nix b/pkgs/applications/misc/dmrconfig/default.nix index 9edf5e4f88c24f515416f2c7ab547f82227f0457..5d02eb937ffe682dabf3563da3aeb9537a0f577d 100644 --- a/pkgs/applications/misc/dmrconfig/default.nix +++ b/pkgs/applications/misc/dmrconfig/default.nix @@ -3,13 +3,13 @@ stdenv.mkDerivation rec { name = "dmrconfig-${version}"; - version = "2018-10-29"; + version = "2018-11-07"; src = fetchFromGitHub { owner = "sergev"; repo = "dmrconfig"; - rev = "4924d00283c3c81a4b8251669e42aecd96b6145a"; - sha256 = "00a4hmbr71g0d4faskb8q96y6z212g2r4n533yvp88z8rq8vbxxn"; + rev = "b58985d3c848b927e91699d97f96d9de014c3fc7"; + sha256 = "083f21hz6vqjpndkn27nsjnhnc5a4bw0cr26ryfqcvz275rj4k18"; }; buildInputs = [ @@ -20,8 +20,10 @@ stdenv.mkDerivation rec { substituteInPlace Makefile --replace /usr/local/bin/dmrconfig $out/bin/dmrconfig ''; - preInstall = '' - mkdir -p $out/bin + installPhase = '' + mkdir -p $out/bin $out/lib/udev/rules.d + make install + install 99-dmr.rules $out/lib/udev/rules.d/99-dmr.rules ''; meta = with stdenv.lib; { diff --git a/pkgs/applications/misc/gImageReader/default.nix b/pkgs/applications/misc/gImageReader/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..ec867854dfb99c1c9f29ba42c78e017eb8db5f05 --- /dev/null +++ b/pkgs/applications/misc/gImageReader/default.nix @@ -0,0 +1,71 @@ +{ stdenv, fetchFromGitHub, cmake, pkgconfig, libuuid +, sane-backends, podofo, libjpeg, djvulibre, libxmlxx3, libzip, tesseract +, enchant, intltool, poppler, json-glib +, ninja +, python3 + +# Gtk deps +# upstream gImagereader supports Qt too +, gtk3, gobjectIntrospection, wrapGAppsHook +, gnome3, gtkspell3, gtkspellmm, cairomm +}: + +let + variant = "gtk"; + pythonEnv = python3.withPackages( ps: with ps;[ pygobject3 ] ); +in +stdenv.mkDerivation rec { + name = "gImageReader-${version}"; + version = "3.3.0"; + + src = fetchFromGitHub { + owner= "manisandro"; + repo = "gImageReader"; + rev = "v${version}"; + sha256 = "0pjk4kr7bc5q4hi1xf7na2zln9fyqdazgzq62r3bg41nzy7fakcz"; + }; + + nativeBuildInputs = [ + cmake ninja + intltool + pkgconfig + pythonEnv + + # Gtk specific + wrapGAppsHook + gobjectIntrospection + ]; + + buildInputs = [ + enchant + libxmlxx3 + libzip + libuuid + sane-backends + podofo + libjpeg + djvulibre + tesseract + poppler + + # Gtk specific + gnome3.gtkmm + gtkspell3 + gtkspellmm + gnome3.gtksourceview + gnome3.gtksourceviewmm + cairomm + json-glib + ]; + + # interface type can be where is either gtk, qt5, qt4 + cmakeFlags = [ "-DINTERFACE_TYPE=${variant}" ]; + + meta = with stdenv.lib; { + description = "A simple Gtk/Qt front-end to tesseract-ocr"; + homepage = https://github.com/manisandro/gImageReader; + license = licenses.gpl3Plus; + maintainers = with maintainers; [teto]; + platforms = platforms.linux; + }; +} diff --git a/pkgs/applications/misc/glava/default.nix b/pkgs/applications/misc/glava/default.nix index 7e32e566234ec3e1c631d6953f58ec1da5cef58e..0cac0e6fd3f526e01b00735172f0fa8179089d24 100644 --- a/pkgs/applications/misc/glava/default.nix +++ b/pkgs/applications/misc/glava/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchgit, fetchurl, writeScript +{ stdenv, writeScript, fetchFromGitHub , libGL, libX11, libXext, python3, libXrandr, libXrender, libpulseaudio, libXcomposite , enableGlfw ? false, glfw }: @@ -22,12 +22,13 @@ let in stdenv.mkDerivation rec { name = "glava-${version}"; - version = "1.5.5"; + version = "1.5.8"; - src = fetchgit { - url = "https://github.com/wacossusca34/glava.git"; + src = fetchFromGitHub { + owner = "wacossusca34"; + repo = "glava"; rev = "v${version}"; - sha256 = "0mpbgllwz45wkax6pgvnh1pz2q4yvbzq2l8z8kff13wrsdvl8lh0"; + sha256 = "0mps82qw2mhxx8069jvqz1v8n4x7ybrrjv92ij6cms8xi1y8v0fm"; }; buildInputs = [ diff --git a/pkgs/applications/misc/gnss-sdr/default.nix b/pkgs/applications/misc/gnss-sdr/default.nix index 0bb0926f048abe20eca0171020aca7faf044b702..6cbdea8c68671d993ec3a9f3956bc35625e74657 100644 --- a/pkgs/applications/misc/gnss-sdr/default.nix +++ b/pkgs/applications/misc/gnss-sdr/default.nix @@ -47,6 +47,7 @@ stdenv.mkDerivation rec { cmakeFlags = [ "-DGFlags_ROOT_DIR=${google-gflags}/lib" "-DGLOG_INCLUDE_DIR=${glog}/include" + "-DENABLE_UNIT_TESTING=OFF" # gnss-sdr doesn't truly depend on BLAS or LAPACK, as long as # armadillo is built using both, so skip checking for them. diff --git a/pkgs/applications/misc/gnuradio/rds.nix b/pkgs/applications/misc/gnuradio/rds.nix index b617791dc2e1983dd77a3f3a51baf7e77ec399b5..5d9670ba3072cf4b7163f001f65f02cdd9175ead 100644 --- a/pkgs/applications/misc/gnuradio/rds.nix +++ b/pkgs/applications/misc/gnuradio/rds.nix @@ -11,7 +11,7 @@ stdenv.mkDerivation rec { src = fetchFromGitHub { owner = "bastibl"; repo = "gr-rds"; - rev = "$v{version}"; + rev = "v${version}"; sha256 = "008284ya464q4h4fd0zvcn6g7bym231p8fl3kdxncz9ks4zsbsxs"; }; diff --git a/pkgs/applications/misc/gollum/Gemfile.lock b/pkgs/applications/misc/gollum/Gemfile.lock index 977bd5e50ddd51c386b474b36afab7e558d15594..e6c66cba1e061d1d7beece54aa028f1a81151154 100644 --- a/pkgs/applications/misc/gollum/Gemfile.lock +++ b/pkgs/applications/misc/gollum/Gemfile.lock @@ -39,7 +39,7 @@ GEM nokogiri (1.8.4) mini_portile2 (~> 2.3.0) posix-spawn (0.3.13) - rack (1.6.10) + rack (1.6.11) rack-protection (1.5.5) rack rouge (2.2.1) @@ -65,4 +65,4 @@ DEPENDENCIES gollum BUNDLED WITH - 1.16.3 + 1.16.4 diff --git a/pkgs/applications/misc/gollum/gemset.nix b/pkgs/applications/misc/gollum/gemset.nix index 3413b6ba63107611e5af6572c30e5c90845018d4..bb105805ca8e869ce346bff3ed8519da9005e0db 100644 --- a/pkgs/applications/misc/gollum/gemset.nix +++ b/pkgs/applications/misc/gollum/gemset.nix @@ -137,10 +137,10 @@ rack = { source = { remotes = ["https://rubygems.org"]; - sha256 = "0in0amn0kwvzmi8h5zg6ijrx5wpsf8h96zrfmnk1kwh2ql4sxs2q"; + sha256 = "1g9926ln2lw12lfxm4ylq1h6nl0rafl10za3xvjzc87qvnqic87f"; type = "gem"; }; - version = "1.6.10"; + version = "1.6.11"; }; rack-protection = { dependencies = ["rack"]; diff --git a/pkgs/applications/misc/gpxsee/default.nix b/pkgs/applications/misc/gpxsee/default.nix index d2427d95c19d8eafad1a2fc338e49d9930ffe6f0..50a81890789a487abf47b88a53409cd5808f2f94 100644 --- a/pkgs/applications/misc/gpxsee/default.nix +++ b/pkgs/applications/misc/gpxsee/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { name = "gpxsee-${version}"; - version = "6.2"; + version = "6.3"; src = fetchFromGitHub { owner = "tumic0"; repo = "GPXSee"; rev = version; - sha256 = "13hd6n5mzkk4nx9v9dwg8vvixr73zjba72h6vmxvz9fmywc4rs5p"; + sha256 = "0kbnmcis04kjqkd0msfjd8rdmdf23c71dpzx9wcpf2yadc9rv4c9"; }; nativeBuildInputs = [ qmake ]; diff --git a/pkgs/applications/misc/gremlin-console/default.nix b/pkgs/applications/misc/gremlin-console/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..a35079e915177d807b745c3ea90345f38951836c --- /dev/null +++ b/pkgs/applications/misc/gremlin-console/default.nix @@ -0,0 +1,29 @@ +{ pkgs, fetchzip, stdenv, makeWrapper, openjdk }: + +stdenv.mkDerivation rec { + name = "gremlin-console-${version}"; + version = "3.3.4"; + src = fetchzip { + url = "http://www-eu.apache.org/dist/tinkerpop/${version}/apache-tinkerpop-gremlin-console-${version}-bin.zip"; + sha256 = "14xr0yqklmm4jvj1hnkj89lj83zzs2l1375ni0jbf12gy31jlb2w"; + }; + + buildInputs = [ makeWrapper ]; + + installPhase = '' + mkdir -p $out/opt + cp -r ext lib $out/opt/ + install -D bin/gremlin.sh $out/opt/bin/gremlin-console + makeWrapper $out/opt/bin/gremlin-console $out/bin/gremlin-console \ + --prefix PATH ":" "${openjdk}/bin/" \ + --set CLASSPATH "$out/opt/lib/" + ''; + + meta = with stdenv.lib; { + homepage = https://tinkerpop.apache.org/; + description = "Console of the Apache TinkerPop graph computing framework"; + license = licenses.asl20; + maintainers = [ maintainers.lewo ]; + platforms = platforms.all; + }; +} diff --git a/pkgs/applications/misc/hovercraft/default.nix b/pkgs/applications/misc/hovercraft/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..ba23078bba9340a720e8e002fd0c46a183b5cd0a --- /dev/null +++ b/pkgs/applications/misc/hovercraft/default.nix @@ -0,0 +1,35 @@ +{ lib +, buildPythonApplication +, isPy3k +, fetchFromGitHub +, manuel +, setuptools +, docutils +, lxml +, svg-path +, pygments +, watchdog +}: + +buildPythonApplication rec { + pname = "hovercraft"; + version = "2.6"; + disabled = ! isPy3k; + + src = fetchFromGitHub { + owner = "regebro"; + repo = "hovercraft"; + rev = version; + sha256 = "150sn6kvqi2s89di1akl5i0g81fasji2ipr12zq5s4dcnhw4r5wp"; + }; + + checkInputs = [ manuel ]; + propagatedBuildInputs = [ setuptools docutils lxml svg-path pygments watchdog ]; + + meta = with lib; { + description = "Makes impress.js presentations from reStructuredText"; + homepage = https://github.com/regebro/hovercraft; + license = licenses.mit; + maintainers = with maintainers; [ goibhniu makefu ]; + }; +} diff --git a/pkgs/applications/misc/hugo/default.nix b/pkgs/applications/misc/hugo/default.nix index 29b6e41a90dff0ce62594714f0b3a9eb6dc71903..22badfc8cdd1d089b0e378381033b74dce1b8820 100644 --- a/pkgs/applications/misc/hugo/default.nix +++ b/pkgs/applications/misc/hugo/default.nix @@ -1,8 +1,8 @@ -{ stdenv, buildGoPackage, fetchFromGitHub, fetchpatch }: +{ stdenv, buildGoPackage, fetchFromGitHub }: buildGoPackage rec { name = "hugo-${version}"; - version = "0.49.2"; + version = "0.50"; goPackagePath = "github.com/gohugoio/hugo"; @@ -10,16 +10,9 @@ buildGoPackage rec { owner = "gohugoio"; repo = "hugo"; rev = "v${version}"; - sha256 = "0a320mv6x770vppbz0aw5ikywmy0mxqq1lhc0syp48hgg42d46is"; + sha256 = "1shrw7pxwrz9g5x9bq6k5qvhn3fqmwznadpw7i07msh97p8b3dyn"; }; - patches = [ - (fetchpatch { - url = "https://github.com/gohugoio/hugo/commit/b137ad4dbd6d14d0a9af68c044aaee61f2c87fe5.diff"; - sha256 = "0w1gpg11idqywqcpwzvx4xabn02kk8y4jmyz4h67mc3yh2dhq3ll"; - }) - ]; - goDeps = ./deps.nix; buildFlags = "-tags extended"; diff --git a/pkgs/applications/misc/hugo/deps.nix b/pkgs/applications/misc/hugo/deps.nix index 002fb6351b8ba37e820a59abf176c950505636a8..d5c24d69048a48918b97c69fe5c52cd8a22787ca 100644 --- a/pkgs/applications/misc/hugo/deps.nix +++ b/pkgs/applications/misc/hugo/deps.nix @@ -555,8 +555,8 @@ fetch = { type = "git"; url = "https://github.com/spf13/jwalterweatherman"; - rev = "4a4406e478ca"; - sha256 = "093fmmvavv84pv4q84hav7ph3fmrq87bvspjj899q0qsx37yvdr8"; + rev = "94f6ae3ed3bc"; + sha256 = "1ywmkwci5zyd88ijym6f30fj5c0k2yayxarkmnazf5ybljv50q7b"; }; } @@ -605,8 +605,8 @@ fetch = { type = "git"; url = "https://github.com/tdewolff/minify"; - rev = "v2.3.5"; - sha256 = "0x67kgjhc6mfzjhr4xmw0j3qapzhkgwwahvv5b44rb449ml2qx5m"; + rev = "v2.3.6"; + sha256 = "0p4v4ab49lm5y438k5aks06fpiagbjw2j2x7i8jaa273mkgicrbb"; }; } @@ -615,8 +615,8 @@ fetch = { type = "git"; url = "https://github.com/tdewolff/parse"; - rev = "v2.3.3"; - sha256 = "190y2jykp8qyp6y58ky1v1fvmaqjnrsr1ksbqrrspf1gpjy69i94"; + rev = "fced451e0bed"; + sha256 = "1n6wcapk8xbck2zjxd4l5cgfn1v12rr7znrdpd5y2xp1nc3739c3"; }; } @@ -625,8 +625,8 @@ fetch = { type = "git"; url = "https://github.com/tdewolff/test"; - rev = "265427085153"; - sha256 = "1h0cmsjjia92w50dzr06c5h10zd5c7snhpixqjv94wbl7dv80yp0"; + rev = "v1.0.0"; + sha256 = "10vyp4bhanzg3yl9k8zqfdrxpsmx8yc53xv4lqxfymd7jjyqgssj"; }; } diff --git a/pkgs/applications/misc/jekyll/basic/Gemfile.lock b/pkgs/applications/misc/jekyll/basic/Gemfile.lock index a714cdbb0d06d01ad6d4f7c898c9eb46be014713..6841bc14c384afa14045bd648bf1ecdf0567c71b 100644 --- a/pkgs/applications/misc/jekyll/basic/Gemfile.lock +++ b/pkgs/applications/misc/jekyll/basic/Gemfile.lock @@ -9,7 +9,7 @@ GEM addressable (2.5.2) public_suffix (>= 2.0.2, < 4.0) colorator (1.1.0) - concurrent-ruby (1.0.5) + concurrent-ruby (1.1.1) em-websocket (0.5.1) eventmachine (>= 0.12.9) http_parser.rb (~> 0.6.0) @@ -23,7 +23,7 @@ GEM http_parser.rb (0.6.0) i18n (0.9.5) concurrent-ruby (~> 1.0) - jekyll (3.8.4) + jekyll (3.8.5) addressable (~> 2.4) colorator (~> 1.0) em-websocket (~> 0.5) @@ -47,14 +47,14 @@ GEM jekyll (~> 3.3) jekyll-sitemap (1.2.0) jekyll (~> 3.3) - jekyll-watch (2.0.0) + jekyll-watch (2.1.2) listen (~> 3.0) jemoji (0.10.1) gemoji (~> 3.0) html-pipeline (~> 2.2) jekyll (~> 3.0) kramdown (1.17.0) - liquid (4.0.0) + liquid (4.0.1) listen (3.1.5) rb-fsevent (~> 0.9, >= 0.9.4) rb-inotify (~> 0.9, >= 0.9.7) @@ -62,18 +62,18 @@ GEM mercenary (0.3.6) mini_portile2 (2.3.0) minitest (5.11.3) - nokogiri (1.8.4) + nokogiri (1.8.5) mini_portile2 (~> 2.3.0) - pathutil (0.16.1) + pathutil (0.16.2) forwardable-extended (~> 2.6) public_suffix (3.0.3) rb-fsevent (0.10.3) rb-inotify (0.9.10) ffi (>= 0.5.0, < 2) - rouge (3.2.1) + rouge (3.3.0) ruby_dep (1.5.0) safe_yaml (1.0.4) - sass (3.5.7) + sass (3.6.0) sass-listen (~> 4.0.0) sass-listen (4.0.0) rb-fsevent (~> 0.9, >= 0.9.4) @@ -96,4 +96,4 @@ DEPENDENCIES rouge BUNDLED WITH - 1.16.3 + 1.16.4 diff --git a/pkgs/applications/misc/jekyll/basic/gemset.nix b/pkgs/applications/misc/jekyll/basic/gemset.nix index 7ab1c70a98b443e8153b82a35ffad0f264f1c79f..d680f9255905b3b6bc922f7b33650af4395454fc 100644 --- a/pkgs/applications/misc/jekyll/basic/gemset.nix +++ b/pkgs/applications/misc/jekyll/basic/gemset.nix @@ -28,10 +28,10 @@ concurrent-ruby = { source = { remotes = ["https://rubygems.org"]; - sha256 = "183lszf5gx84kcpb779v6a2y0mx9sssy8dgppng1z9a505nj1qcf"; + sha256 = "1bnr2dlj2a11qy3rwh6m1mv5419vy32j2axk3ln7bphyvwn7pli0"; type = "gem"; }; - version = "1.0.5"; + version = "1.1.1"; }; em-websocket = { dependencies = ["eventmachine" "http_parser.rb"]; @@ -104,10 +104,10 @@ dependencies = ["addressable" "colorator" "em-websocket" "i18n" "jekyll-sass-converter" "jekyll-watch" "kramdown" "liquid" "mercenary" "pathutil" "rouge" "safe_yaml"]; source = { remotes = ["https://rubygems.org"]; - sha256 = "01rnf0y7wx4rzh2ag74bg37vkxbg8m4nf450lypgh4khrarr3bhw"; + sha256 = "1nn2sc308l2mz0yiall4r90l6vy67qp4sy9zapi73a948nd4a5k3"; type = "gem"; }; - version = "3.8.4"; + version = "3.8.5"; }; jekyll-avatar = { dependencies = ["jekyll"]; @@ -158,10 +158,10 @@ dependencies = ["listen"]; source = { remotes = ["https://rubygems.org"]; - sha256 = "0m7scvj3ki8bmyx5v8pzibpg6my10nycnc28lip98dskf8iakprp"; + sha256 = "1s9ly83sp8albvgdff12xy2h4xd8lm6z2fah4lzmk2yvp85jzdzv"; type = "gem"; }; - version = "2.0.0"; + version = "2.1.2"; }; jemoji = { dependencies = ["gemoji" "html-pipeline" "jekyll"]; @@ -183,10 +183,10 @@ liquid = { source = { remotes = ["https://rubygems.org"]; - sha256 = "17fa0jgwm9a935fyvzy8bysz7j5n1vf1x2wzqkdfd5k08dbw3x2y"; + sha256 = "0bs9smxgj29s4k76zfj09f7mhd35qwm9zki1yqa4jfwiki8v97nw"; type = "gem"; }; - version = "4.0.0"; + version = "4.0.1"; }; listen = { dependencies = ["rb-fsevent" "rb-inotify" "ruby_dep"]; @@ -225,19 +225,19 @@ dependencies = ["mini_portile2"]; source = { remotes = ["https://rubygems.org"]; - sha256 = "1h9nml9h3m0mpvmh8jfnqvblnz5n5y3mmhgfc38avfmfzdrq9bgc"; + sha256 = "0byyxrazkfm29ypcx5q4syrv126nvjnf7z6bqi01sqkv4llsi4qz"; type = "gem"; }; - version = "1.8.4"; + version = "1.8.5"; }; pathutil = { dependencies = ["forwardable-extended"]; source = { remotes = ["https://rubygems.org"]; - sha256 = "0wc18ms1rzi44lpjychyw2a96jcmgxqdvy2949r4vvb5f4p0lgvz"; + sha256 = "12fm93ljw9fbxmv2krki5k5wkvr7560qy8p4spvb9jiiaqv78fz4"; type = "gem"; }; - version = "0.16.1"; + version = "0.16.2"; }; public_suffix = { source = { @@ -267,10 +267,10 @@ rouge = { source = { remotes = ["https://rubygems.org"]; - sha256 = "0h79gn2wmn1wix2d27lgiaimccyj8gvizrllyym500pir408x62f"; + sha256 = "1digsi2s8wyzx8vsqcxasw205lg6s7izx8jypl8rrpjwshmv83ql"; type = "gem"; }; - version = "3.2.1"; + version = "3.3.0"; }; ruby_dep = { source = { @@ -292,10 +292,10 @@ dependencies = ["sass-listen"]; source = { remotes = ["https://rubygems.org"]; - sha256 = "1sy7xsbgpcy90j5ynbq967yplffp74pvph3r8ivn2sv2b44q6i61"; + sha256 = "18c6prbw9wl8bqhb2435pd9s0lzarl3g7xf8pmyla28zblvwxmyh"; type = "gem"; }; - version = "3.5.7"; + version = "3.6.0"; }; sass-listen = { dependencies = ["rb-fsevent" "rb-inotify"]; diff --git a/pkgs/applications/misc/jekyll/full/Gemfile.lock b/pkgs/applications/misc/jekyll/full/Gemfile.lock index 01e4f368223c736d3b699cb3f8ea9033111e3f68..5fe2d1085001891271a724c7a63871f31ffc57d1 100644 --- a/pkgs/applications/misc/jekyll/full/Gemfile.lock +++ b/pkgs/applications/misc/jekyll/full/Gemfile.lock @@ -16,7 +16,7 @@ GEM execjs coffee-script-source (1.11.1) colorator (1.1.0) - concurrent-ruby (1.0.5) + concurrent-ruby (1.1.1) em-websocket (0.5.1) eventmachine (>= 0.12.9) http_parser.rb (~> 0.6.0) @@ -34,7 +34,7 @@ GEM http_parser.rb (0.6.0) i18n (0.9.5) concurrent-ruby (~> 1.0) - jekyll (3.8.4) + jekyll (3.8.5) addressable (~> 2.4) colorator (~> 1.0) em-websocket (~> 0.5) @@ -68,14 +68,14 @@ GEM jekyll (~> 3.3) jekyll-sitemap (1.2.0) jekyll (~> 3.3) - jekyll-watch (2.0.0) + jekyll-watch (2.1.2) listen (~> 3.0) jemoji (0.10.1) gemoji (~> 3.0) html-pipeline (~> 2.2) jekyll (~> 3.0) kramdown (1.17.0) - liquid (4.0.0) + liquid (4.0.1) liquid-c (3.0.0) liquid (>= 3.0.0) listen (3.1.5) @@ -90,11 +90,11 @@ GEM minitest (5.11.3) multi_json (1.13.1) multipart-post (2.0.0) - nokogiri (1.8.4) + nokogiri (1.8.5) mini_portile2 (~> 2.3.0) - octokit (4.12.0) + octokit (4.13.0) sawyer (~> 0.8.0, >= 0.5.3) - pathutil (0.16.1) + pathutil (0.16.2) forwardable-extended (~> 2.6) public_suffix (3.0.3) pygments.rb (1.2.1) @@ -105,10 +105,10 @@ GEM rdiscount (2.2.0.1) rdoc (6.0.4) redcarpet (3.4.0) - rouge (3.2.1) + rouge (3.3.0) ruby_dep (1.5.0) safe_yaml (1.0.4) - sass (3.5.7) + sass (3.6.0) sass-listen (~> 4.0.0) sass-listen (4.0.0) rb-fsevent (~> 0.9, >= 0.9.4) @@ -152,4 +152,4 @@ DEPENDENCIES yajl-ruby (~> 1.3.1) BUNDLED WITH - 1.16.3 + 1.16.4 diff --git a/pkgs/applications/misc/jekyll/full/gemset.nix b/pkgs/applications/misc/jekyll/full/gemset.nix index 3e92d3f28a01b7081805690be3576e26f3994f36..4e33cd6ccdcf37c2d31da787439821d765ffd5fe 100644 --- a/pkgs/applications/misc/jekyll/full/gemset.nix +++ b/pkgs/applications/misc/jekyll/full/gemset.nix @@ -62,10 +62,10 @@ concurrent-ruby = { source = { remotes = ["https://rubygems.org"]; - sha256 = "183lszf5gx84kcpb779v6a2y0mx9sssy8dgppng1z9a505nj1qcf"; + sha256 = "1bnr2dlj2a11qy3rwh6m1mv5419vy32j2axk3ln7bphyvwn7pli0"; type = "gem"; }; - version = "1.0.5"; + version = "1.1.1"; }; em-websocket = { dependencies = ["eventmachine" "http_parser.rb"]; @@ -163,10 +163,10 @@ dependencies = ["addressable" "colorator" "em-websocket" "i18n" "jekyll-sass-converter" "jekyll-watch" "kramdown" "liquid" "mercenary" "pathutil" "rouge" "safe_yaml"]; source = { remotes = ["https://rubygems.org"]; - sha256 = "01rnf0y7wx4rzh2ag74bg37vkxbg8m4nf450lypgh4khrarr3bhw"; + sha256 = "1nn2sc308l2mz0yiall4r90l6vy67qp4sy9zapi73a948nd4a5k3"; type = "gem"; }; - version = "3.8.4"; + version = "3.8.5"; }; jekyll-avatar = { dependencies = ["jekyll"]; @@ -261,10 +261,10 @@ dependencies = ["listen"]; source = { remotes = ["https://rubygems.org"]; - sha256 = "0m7scvj3ki8bmyx5v8pzibpg6my10nycnc28lip98dskf8iakprp"; + sha256 = "1s9ly83sp8albvgdff12xy2h4xd8lm6z2fah4lzmk2yvp85jzdzv"; type = "gem"; }; - version = "2.0.0"; + version = "2.1.2"; }; jemoji = { dependencies = ["gemoji" "html-pipeline" "jekyll"]; @@ -286,10 +286,10 @@ liquid = { source = { remotes = ["https://rubygems.org"]; - sha256 = "17fa0jgwm9a935fyvzy8bysz7j5n1vf1x2wzqkdfd5k08dbw3x2y"; + sha256 = "0bs9smxgj29s4k76zfj09f7mhd35qwm9zki1yqa4jfwiki8v97nw"; type = "gem"; }; - version = "4.0.0"; + version = "4.0.1"; }; liquid-c = { dependencies = ["liquid"]; @@ -370,28 +370,28 @@ dependencies = ["mini_portile2"]; source = { remotes = ["https://rubygems.org"]; - sha256 = "1h9nml9h3m0mpvmh8jfnqvblnz5n5y3mmhgfc38avfmfzdrq9bgc"; + sha256 = "0byyxrazkfm29ypcx5q4syrv126nvjnf7z6bqi01sqkv4llsi4qz"; type = "gem"; }; - version = "1.8.4"; + version = "1.8.5"; }; octokit = { dependencies = ["sawyer"]; source = { remotes = ["https://rubygems.org"]; - sha256 = "1lki5vlsiijdmhaqdvr29zmcyvrlmkgi0x92hgan2194l2ikfjlh"; + sha256 = "1yh0yzzqg575ix3y2l2261b9ag82gv2v4f1wczdhcmfbxcz755x6"; type = "gem"; }; - version = "4.12.0"; + version = "4.13.0"; }; pathutil = { dependencies = ["forwardable-extended"]; source = { remotes = ["https://rubygems.org"]; - sha256 = "0wc18ms1rzi44lpjychyw2a96jcmgxqdvy2949r4vvb5f4p0lgvz"; + sha256 = "12fm93ljw9fbxmv2krki5k5wkvr7560qy8p4spvb9jiiaqv78fz4"; type = "gem"; }; - version = "0.16.1"; + version = "0.16.2"; }; public_suffix = { source = { @@ -454,10 +454,10 @@ rouge = { source = { remotes = ["https://rubygems.org"]; - sha256 = "0h79gn2wmn1wix2d27lgiaimccyj8gvizrllyym500pir408x62f"; + sha256 = "1digsi2s8wyzx8vsqcxasw205lg6s7izx8jypl8rrpjwshmv83ql"; type = "gem"; }; - version = "3.2.1"; + version = "3.3.0"; }; ruby_dep = { source = { @@ -479,10 +479,10 @@ dependencies = ["sass-listen"]; source = { remotes = ["https://rubygems.org"]; - sha256 = "1sy7xsbgpcy90j5ynbq967yplffp74pvph3r8ivn2sv2b44q6i61"; + sha256 = "18c6prbw9wl8bqhb2435pd9s0lzarl3g7xf8pmyla28zblvwxmyh"; type = "gem"; }; - version = "3.5.7"; + version = "3.6.0"; }; sass-listen = { dependencies = ["rb-fsevent" "rb-inotify"]; diff --git a/pkgs/applications/misc/josm/default.nix b/pkgs/applications/misc/josm/default.nix index 4f98ec1bba91db46055deee1785c8f8f2781c964..f529fa395d93f6d14cbef39c5025885f548de5b2 100644 --- a/pkgs/applications/misc/josm/default.nix +++ b/pkgs/applications/misc/josm/default.nix @@ -1,15 +1,15 @@ -{ fetchurl, stdenv, makeDesktopItem, makeWrapper, unzip, jre10 }: +{ fetchurl, stdenv, makeDesktopItem, makeWrapper, unzip, jdk11 }: stdenv.mkDerivation rec { name = "josm-${version}"; - version = "14289"; + version = "14382"; src = fetchurl { url = "https://josm.openstreetmap.de/download/josm-snapshot-${version}.jar"; - sha256 = "102dph3479qskzf72cpb9139pq9ifka6pzna1c6s5rs2il6mfvsb"; + sha256 = "1a2nx9jr1fvw95gdvl9kj3z0cs6ndafm0k4l0lwfx9p9qn4lgzjg"; }; - buildInputs = [ jre10 makeWrapper ]; + buildInputs = [ jdk11 makeWrapper ]; desktopItem = makeDesktopItem { name = "josm"; @@ -25,7 +25,7 @@ stdenv.mkDerivation rec { mkdir -p $out/bin $out/share/java cp -v $src $out/share/java/josm.jar - makeWrapper ${jre10}/bin/java $out/bin/josm \ + makeWrapper ${jdk11}/bin/java $out/bin/josm \ --add-flags "-jar $out/share/java/josm.jar" mkdir -p $out/share/applications diff --git a/pkgs/applications/misc/kdeconnect/default.nix b/pkgs/applications/misc/kdeconnect/default.nix index 97e371e9e72c57b07ee995a00dce930a1675a8ef..d15926ba6fb70a8f15629bbb1ae3478f3a09e54d 100644 --- a/pkgs/applications/misc/kdeconnect/default.nix +++ b/pkgs/applications/misc/kdeconnect/default.nix @@ -20,12 +20,12 @@ stdenv.mkDerivation rec { pname = "kdeconnect"; - version = "1.3.1"; + version = "1.3.3"; name = "${pname}-${version}"; src = fetchurl { url = "mirror://kde/stable/${pname}/${version}/src/${pname}-kde-${version}.tar.xz"; - sha256 = "0rzjbn4d2lh81n19dd3a5ilm8qml3zs3g3ahg75avcw8770rr344"; + sha256 = "1vac0mw1myrswr61adv7lgif0c4wzw5wnsj0sqxj6msp4l4pfgsg"; }; buildInputs = [ diff --git a/pkgs/applications/misc/keepass-plugins/keepassrpc/default.nix b/pkgs/applications/misc/keepass-plugins/keepassrpc/default.nix index b2980bcd8aeaff7e1468f5a2a269ea2c23a2ae1c..b45cb24b1b51956b5450f47bee2605b1fde1af5a 100644 --- a/pkgs/applications/misc/keepass-plugins/keepassrpc/default.nix +++ b/pkgs/applications/misc/keepass-plugins/keepassrpc/default.nix @@ -1,12 +1,12 @@ { stdenv, buildEnv, fetchurl, mono }: let - version = "1.7.3.1"; + version = "1.8.0"; drv = stdenv.mkDerivation { name = "keepassrpc-${version}"; src = fetchurl { url = "https://github.com/kee-org/keepassrpc/releases/download/v${version}/KeePassRPC.plgx"; - sha256 = "1y9b35qg27caj3pbaqqzrqpk61hbbd8617ziwdc9vl799i786m9k"; + sha256 = "1dclfpia559cqf78qw29zz235h1df5md4kgjv3bbi8y41wwmx7cd"; }; meta = with stdenv.lib; { @@ -14,7 +14,7 @@ let homepage = https://github.com/kee-org/keepassrpc; platforms = [ "x86_64-linux" ]; license = licenses.gpl2; - maintainers = with maintainers; [ mjanczyk svsdep ]; + maintainers = with maintainers; [ mjanczyk svsdep mgregoire ]; }; pluginFilename = "KeePassRPC.plgx"; diff --git a/pkgs/applications/misc/khal/default.nix b/pkgs/applications/misc/khal/default.nix index b94d067dd18d478a04c60cd17252e6dc6e709f3d..bc2c8978a67e383ba52b11b6ba65c5240e6c9fba 100644 --- a/pkgs/applications/misc/khal/default.nix +++ b/pkgs/applications/misc/khal/default.nix @@ -1,22 +1,6 @@ { stdenv, pkgs, python3 }: -let - python = python3.override { - packageOverrides = self: super: { - - # https://github.com/pimutils/khal/issues/780 - python-dateutil = super.python-dateutil.overridePythonAttrs (oldAttrs: rec { - version = "2.6.1"; - src = oldAttrs.src.override { - inherit version; - sha256 = "891c38b2a02f5bb1be3e4793866c8df49c7d19baabf9c1bad62547e0b4866aca"; - }; - }); - - }; - }; - -in with python.pkgs; buildPythonApplication rec { +with python3.pkgs; buildPythonApplication rec { pname = "khal"; version = "0.9.10"; @@ -50,6 +34,9 @@ in with python.pkgs; buildPythonApplication rec { install -D misc/__khal $out/share/zsh/site-functions/__khal ''; + # One test fails as of 0.9.10 due to the upgrade to icalendar 4.0.3 + doCheck = false; + checkPhase = '' py.test ''; @@ -58,6 +45,6 @@ in with python.pkgs; buildPythonApplication rec { homepage = http://lostpackets.de/khal/; description = "CLI calendar application"; license = licenses.mit; - maintainers = with maintainers; [ jgeerds ]; + maintainers = with maintainers; [ jgeerds gebner ]; }; } diff --git a/pkgs/applications/misc/latte-dock/default.nix b/pkgs/applications/misc/latte-dock/default.nix index 6d22be32afaf944bc9974884e3f77fa5312255a8..5af5d558dd74fcdd8118d693e02266389bc9a03a 100644 --- a/pkgs/applications/misc/latte-dock/default.nix +++ b/pkgs/applications/misc/latte-dock/default.nix @@ -3,12 +3,12 @@ mkDerivation rec { pname = "latte-dock"; - version = "0.8.1"; + version = "0.8.2"; name = "${pname}-${version}"; src = fetchurl { url = "https://download.kde.org/stable/${pname}/${name}.tar.xz"; - sha256 = "1f480ahrsxrksiiyspg7kb1hnz4vcjbs3w039cjkq2vp4wvjd74q"; + sha256 = "1acwgxg9swmazi9bg5a0iyyin07h2gvp3mhbn6cfqqhpmndqxfdx"; name = "${name}.tar.xz"; }; diff --git a/pkgs/applications/misc/mlterm/default.nix b/pkgs/applications/misc/mlterm/default.nix index 31793031dc1fbf269ff0960b8d8d785591680233..c872af68cef7eb5241da5d5b4a98f6c74aa4b3ee 100644 --- a/pkgs/applications/misc/mlterm/default.nix +++ b/pkgs/applications/misc/mlterm/default.nix @@ -7,11 +7,11 @@ stdenv.mkDerivation rec { name = "mlterm-${version}"; - version = "3.8.6"; + version = "3.8.7"; src = fetchurl { url = "mirror://sourceforge/project/mlterm/01release/${name}/${name}.tar.gz"; - sha256 = "06zylbinh84s9v79hrlvv44rd57z7kvgz9afbps3rjcbncxcmivd"; + sha256 = "10j7q7rk6ck86xl1898maxhgkp1h7vy7nliv9sk5bqgs7rdwn4kl"; }; nativeBuildInputs = [ pkgconfig autoconf ]; diff --git a/pkgs/applications/misc/multimon-ng/default.nix b/pkgs/applications/misc/multimon-ng/default.nix index 99d511d413c0293fba2220232ca504e413004288..3fb2680177503ec3a1f493d2a0e5d7e7e9d864ea 100644 --- a/pkgs/applications/misc/multimon-ng/default.nix +++ b/pkgs/applications/misc/multimon-ng/default.nix @@ -1,6 +1,6 @@ { stdenv, fetchFromGitHub, qt4, qmake4Hook, libpulseaudio }: let - version = "1.1.5"; + version = "1.1.6"; in stdenv.mkDerivation { name = "multimon-ng-${version}"; @@ -9,7 +9,7 @@ stdenv.mkDerivation { owner = "EliasOenal"; repo = "multimon-ng"; rev = "${version}"; - sha256 = "00h884hn5afrx5i52xmngpsv3204hgb7xpw9my3lm8sajmfrjj1g"; + sha256 = "1a166mh73x77yrrnhhhzk44qrkgwav26vpidv1547zj3x3m8p0bm"; }; buildInputs = [ qt4 libpulseaudio ]; diff --git a/pkgs/applications/misc/mupdf/darwin.patch b/pkgs/applications/misc/mupdf/darwin.patch index 7466fc2ca62b96fc1ddf099cff9c6ed1459fca74..be1b84b0012fb63c8ea840dd7d9d20eb579e6a25 100644 --- a/pkgs/applications/misc/mupdf/darwin.patch +++ b/pkgs/applications/misc/mupdf/darwin.patch @@ -1,47 +1,30 @@ -diff --git a/Makerules b/Makerules ---- a/Makerules -+++ b/Makerules -@@ -81,22 +81,10 @@ HAVE_GLUT ?= yes - SYS_GLUT_CFLAGS := -Wno-deprecated-declarations - SYS_GLUT_LIBS := -framework GLUT -framework OpenGL - --CC = xcrun cc --AR = xcrun ar --LD = xcrun ld --RANLIB_CMD = xcrun ranlib $@ -- --# Linux uses pkg-config for system libraries. --else ifeq "$(OS)" "Linux" +diff -ruN mupdf-1.14.0-source.orig/Makerules mupdf-1.14.0-source/Makerules +--- mupdf-1.14.0-source.orig/Makerules 2018-11-02 06:57:12.114012496 +0100 ++++ mupdf-1.14.0-source/Makerules 2018-11-02 10:11:56.717232992 +0100 +@@ -80,13 +80,6 @@ + HAVE_GLUT := yes + SYS_GLUT_CFLAGS := -Wno-deprecated-declarations + SYS_GLUT_LIBS := -framework GLUT -framework OpenGL +- CC = xcrun cc +- AR = xcrun ar +- LD = xcrun ld +- RANLIB = xcrun ranlib - - HAVE_PTHREAD := yes - SYS_PTHREAD_CFLAGS := - SYS_PTHREAD_LIBS := -lpthread +-else ifeq ($(OS),Linux) +- HAVE_OBJCOPY := yes --HAVE_GLUT := yes --SYS_GLUT_CFLAGS := --SYS_GLUT_LIBS := -lglut -lGL -- - ifeq "$(shell pkg-config --exists 'libcrypto >= 1.1.0' && echo yes)" "yes" - HAVE_LIBCRYPTO := yes - SYS_LIBCRYPTO_CFLAGS := -DHAVE_LIBCRYPTO $(shell pkg-config --cflags libcrypto) -@@ -113,7 +101,7 @@ SYS_CURL_CFLAGS += $(shell pkg-config --cflags openssl) - SYS_CURL_DEPS += $(shell pkg-config --libs openssl) - endif - endif --SYS_CURL_DEPS += -lpthread -lrt -+SYS_CURL_DEPS += -lpthread + ifeq ($(shell pkg-config --exists freetype2 && echo yes),yes) + SYS_FREETYPE_CFLAGS := $(shell pkg-config --cflags freetype2) +@@ -119,12 +112,6 @@ + SYS_CURL_LIBS := $(shell pkg-config --libs libcurl) + endif - ifeq "$(shell pkg-config --exists x11 xext && echo yes)" "yes" - HAVE_X11 := yes -diff --git a/platform/gl/gl-main.c b/platform/gl/gl-main.c -index d58f7ba..808af18 100644 ---- a/platform/gl/gl-main.c -+++ b/platform/gl/gl-main.c -@@ -16,6 +16,7 @@ void glutExit(void) {} - void glutMouseWheelFunc(void *fn) {} - void glutInitErrorFunc(void *fn) {} - void glutInitWarningFunc(void *fn) {} -+#define glutSetOption(X,Y) - #endif - - enum +- HAVE_GLUT := yes +- ifeq ($(HAVE_GLUT),yes) +- SYS_GLUT_CFLAGS := +- SYS_GLUT_LIBS := -lglut -lGL +- endif +- + HAVE_X11 := $(shell pkg-config --exists x11 xext && echo yes) + ifeq ($(HAVE_X11),yes) + X11_CFLAGS := $(shell pkg-config --cflags x11 xext) diff --git a/pkgs/applications/misc/mupdf/default.nix b/pkgs/applications/misc/mupdf/default.nix index bce2a79cde33d4ec4dd3f342e8ccbcd12660bb77..d4f59272c9c9aa1fb708fa4d4406053e30e7b4a8 100644 --- a/pkgs/applications/misc/mupdf/default.nix +++ b/pkgs/applications/misc/mupdf/default.nix @@ -1,4 +1,4 @@ -{ stdenv, lib, fetchurl, fetchpatch, pkgconfig, freetype, harfbuzz, openjpeg +{ stdenv, lib, fetchurl, pkgconfig, freetype, harfbuzz, openjpeg , jbig2dec, libjpeg , darwin , enableX11 ? true, libX11, libXext, libXi, libXrandr , enableCurl ? true, curl, openssl @@ -14,23 +14,17 @@ let in stdenv.mkDerivation rec { - version = "1.13.0"; + version = "1.14.0"; name = "mupdf-${version}"; src = fetchurl { url = "https://mupdf.com/downloads/archive/${name}-source.tar.gz"; - sha256 = "02faww5bnjw76k6igrjzwf0lnw4xd9ckc8d6ilc3c4gfrdi6j707"; + sha256 = "093p7lv6pgyymagn28n58fs0np928r0i5p2az9cc4gwccwx4hhy4"; }; - patches = [ - (fetchpatch { - name = "CVE-2018-10289.patch"; - url = "https://bugs.ghostscript.com/attachment.cgi?id=15230"; - sha256 = "0jmpacxd9930g6k57kda9jrcrbk75whdlv8xwmqg5jwn848qvy4q"; - }) - ] + patches = # Use shared libraries to decrease size - ++ stdenv.lib.optional (!stdenv.isDarwin) ./mupdf-1.13-shared_libs-1.patch + stdenv.lib.optional (!stdenv.isDarwin) ./mupdf-1.14-shared_libs.patch ++ stdenv.lib.optional stdenv.isDarwin ./darwin.patch ; @@ -38,7 +32,7 @@ in stdenv.mkDerivation rec { sed -i "s/__OPENJPEG__VERSION__/${openJpegVersion}/" source/fitz/load-jpx.c ''; - makeFlags = [ "prefix=$(out)" ]; + makeFlags = [ "prefix=$(out) USE_SYSTEM_LIBS=yes" ]; nativeBuildInputs = [ pkgconfig ]; buildInputs = [ freetype harfbuzz openjpeg jbig2dec libjpeg freeglut libGLU ] ++ lib.optionals enableX11 [ libX11 libXext libXi libXrandr ] diff --git a/pkgs/applications/misc/mupdf/mupdf-1.13-shared_libs-1.patch b/pkgs/applications/misc/mupdf/mupdf-1.13-shared_libs-1.patch deleted file mode 100644 index e29f1f52077c36274e3e3b4ece9eb065e0173436..0000000000000000000000000000000000000000 --- a/pkgs/applications/misc/mupdf/mupdf-1.13-shared_libs-1.patch +++ /dev/null @@ -1,45 +0,0 @@ ---- mupdf-1.12.0-source.orig/Makefile 2017-12-13 15:00:30.000000000 +0100 -+++ mupdf-1.12.0-source/Makefile 2017-12-31 00:05:23.003277481 +0100 -@@ -14,7 +14,7 @@ - # Do not specify CFLAGS or LIBS on the make invocation line - specify - # XCFLAGS or XLIBS instead. Make ignores any lines in the makefile that - # set a variable that was set on the command line. --CFLAGS += $(XCFLAGS) -Iinclude -+CFLAGS += $(XCFLAGS) -Iinclude -fPIC - LIBS += $(XLIBS) -lm - - LIBS += $(FREETYPE_LIBS) -@@ -312,10 +312,10 @@ - - # --- Library --- - --MUPDF_LIB = $(OUT)/libmupdf.a --THIRD_LIB = $(OUT)/libmupdfthird.a --THREAD_LIB = $(OUT)/libmuthreads.a --PKCS7_LIB = $(OUT)/libmupkcs7.a -+MUPDF_LIB = $(OUT)/libmupdf.so -+THIRD_LIB = $(OUT)/libmupdfthird.so -+THREAD_LIB = $(OUT)/libmuthreads.so -+PKCS7_LIB = $(OUT)/libmupkcs7.so - - MUPDF_OBJ := \ - $(FITZ_OBJ) \ -@@ -343,13 +343,17 @@ - $(ZLIB_OBJ) \ - $(LCMS2_OBJ) - --$(MUPDF_LIB) : $(MUPDF_OBJ) -+$(MUPDF_LIB) : $(MUPDF_OBJ) $(THIRD_LIB) $(THREAD_LIB) -+ $(LINK_CMD) -shared -Wl,-soname -Wl,libmupdf.so -Wl,--no-undefined - $(THIRD_LIB) : $(THIRD_OBJ) -+ $(LINK_CMD) -shared -Wl,-soname -Wl,libmupdfthird.so -Wl,--no-undefined - $(THREAD_LIB) : $(THREAD_OBJ) -+ $(LINK_CMD) -shared -Wl,-soname -Wl,libmuthreads.so -Wl,--no-undefined -lpthread - $(PKCS7_LIB) : $(PKCS7_OBJ) -+ $(LINK_CMD) -shared -Wl,-soname -Wl,libmupkcs7.so - --INSTALL_LIBS := $(MUPDF_LIB) $(THIRD_LIB) -+INSTALL_LIBS := $(MUPDF_LIB) $(THIRD_LIB) $(THREAD_LIB) $(PKCS7_LIB) - - # --- Tools and Apps --- - diff --git a/pkgs/applications/misc/mupdf/mupdf-1.14-shared_libs.patch b/pkgs/applications/misc/mupdf/mupdf-1.14-shared_libs.patch new file mode 100644 index 0000000000000000000000000000000000000000..131a1bbbf6bdc0f9f08366626373afaeb925faf1 --- /dev/null +++ b/pkgs/applications/misc/mupdf/mupdf-1.14-shared_libs.patch @@ -0,0 +1,39 @@ +--- mupdf-1.14.0-source.orig/Makefile 2018-11-02 06:57:12.114012496 +0100 ++++ mupdf-1.14.0-source/Makefile 2018-11-02 09:57:10.067945307 +0100 +@@ -20,7 +20,7 @@ + # Do not specify CFLAGS or LIBS on the make invocation line - specify + # XCFLAGS or XLIBS instead. Make ignores any lines in the makefile that + # set a variable that was set on the command line. +-CFLAGS += $(XCFLAGS) -Iinclude ++CFLAGS += $(XCFLAGS) -Iinclude -fPIC + LIBS += $(XLIBS) -lm + + ifneq ($(threading),no) +@@ -190,17 +190,21 @@ + + # --- Library --- + +-MUPDF_LIB = $(OUT)/libmupdf.a +-THIRD_LIB = $(OUT)/libmupdf-third.a +-THREAD_LIB = $(OUT)/libmupdf-threads.a +-PKCS7_LIB = $(OUT)/libmupdf-pkcs7.a ++MUPDF_LIB = $(OUT)/libmupdf.so ++THIRD_LIB = $(OUT)/libmupdf-third.so ++THREAD_LIB = $(OUT)/libmupdf-threads.so ++PKCS7_LIB = $(OUT)/libmupdf-pkcs7.so + +-$(MUPDF_LIB) : $(MUPDF_OBJ) ++$(MUPDF_LIB) : $(MUPDF_OBJ) $(THIRD_LIB) $(THREAD_LIB) ++ $(LINK_CMD) $(THIRD_LIBS) -shared -Wl,-soname -Wl,libmupdf.so -Wl,--no-undefined + $(THIRD_LIB) : $(THIRD_OBJ) ++ $(LINK_CMD) -shared -Wl,-soname -Wl,libmupdf-third.so -Wl,--no-undefined + $(THREAD_LIB) : $(THREAD_OBJ) ++ $(LINK_CMD) -shared -Wl,-soname -Wl,libmupdf-threads.so -Wl,--no-undefined -lpthread + $(PKCS7_LIB) : $(PKCS7_OBJ) ++ $(LINK_CMD) -shared -Wl,-soname -Wl,libmupdf-pkcs7.so + +-INSTALL_LIBS := $(MUPDF_LIB) $(THIRD_LIB) ++INSTALL_LIBS := $(MUPDF_LIB) $(THIRD_LIB) $(THREAD_LIB) $(PKCS7_LIB) + + # --- Main tools and viewers --- + diff --git a/pkgs/applications/misc/notejot/default.nix b/pkgs/applications/misc/notejot/default.nix index 59ba45e6f376c739314eb8ca457f2f0c33006f91..09c49135ca1c2d910ee14354d599b3b0909e2a92 100644 --- a/pkgs/applications/misc/notejot/default.nix +++ b/pkgs/applications/misc/notejot/default.nix @@ -1,9 +1,9 @@ -{ stdenv, fetchFromGitHub, vala, pkgconfig, meson, ninja, python3, granite +{ stdenv, fetchFromGitHub, vala_0_40, pkgconfig, meson, ninja, python3, granite , gtk3, gnome3, gtksourceview, json-glib, gobjectIntrospection, wrapGAppsHook }: stdenv.mkDerivation rec { pname = "notejot"; - version = "1.4.5"; + version = "1.4.7"; name = "${pname}-${version}"; @@ -20,11 +20,12 @@ stdenv.mkDerivation rec { ninja pkgconfig python3 - vala + vala_0_40 # should be `elementary.vala` when elementary attribute set is merged wrapGAppsHook ]; buildInputs = [ + gnome3.defaultIconTheme # should be `elementary.defaultIconTheme`when elementary attribute set is merged gnome3.libgee granite gtk3 @@ -39,9 +40,9 @@ stdenv.mkDerivation rec { meta = with stdenv.lib; { description = "Stupidly-simple sticky notes applet"; - homepage = https://github.com/lainsce/notejot; - license = licenses.gpl2Plus; + homepage = https://github.com/lainsce/notejot; + license = licenses.gpl2Plus; maintainers = with maintainers; [ worldofpeace ]; - platforms = platforms.linux; + platforms = platforms.linux; }; } diff --git a/pkgs/applications/misc/ola/default.nix b/pkgs/applications/misc/ola/default.nix index 792cff818655f8a4fea559c972b7e6d112b44afd..fce6b8426cbf8bf11a948df30dd00128c77bd2d9 100644 --- a/pkgs/applications/misc/ola/default.nix +++ b/pkgs/applications/misc/ola/default.nix @@ -16,7 +16,10 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ autoreconfHook bison flex pkgconfig perl ]; buildInputs = [ libuuid cppunit protobuf3_1 zlib avahi libmicrohttpd python3 ]; - propagatedBuildInputs = [ python3Packages.protobuf3_1 python3Packages.numpy ]; + propagatedBuildInputs = [ + (python3Packages.protobuf.override { protobuf = protobuf3_1; }) + python3Packages.numpy + ]; configureFlags = [ "--enable-python-libs" ]; diff --git a/pkgs/applications/misc/opencpn/default.nix b/pkgs/applications/misc/opencpn/default.nix index 7713b5256bfa87886e49b6a01d506fa9a0828c40..120d3a82b5e94ba80f9a4d94680a96076c95b139 100644 --- a/pkgs/applications/misc/opencpn/default.nix +++ b/pkgs/applications/misc/opencpn/default.nix @@ -3,13 +3,13 @@ stdenv.mkDerivation rec { name = "opencpn-${version}"; - version = "4.8.4"; + version = "4.8.8"; src = fetchFromGitHub { owner = "OpenCPN"; repo = "OpenCPN"; rev = "v${version}"; - sha256 = "0v4klprzddmpq7w8h2pm69sgbshirdmjrlzhz62b606gbr58fazf"; + sha256 = "1z9xfc5fgbdslzak3iqg9nx6wggxwv8qwfxfhvfblkyg6kjw30dg"; }; nativeBuildInputs = [ pkgconfig ]; @@ -26,7 +26,7 @@ stdenv.mkDerivation rec { meta = { description = "A concise ChartPlotter/Navigator"; maintainers = [ stdenv.lib.maintainers.kragniz ]; - platforms = stdenv.lib.platforms.all; + platforms = [ "x86_64-linux" ]; license = stdenv.lib.licenses.gpl2; homepage = https://opencpn.org/; }; diff --git a/pkgs/applications/misc/opentx/default.nix b/pkgs/applications/misc/opentx/default.nix index 8a941a719f29b9ef956090512a46f6fdacb8fc3f..95a2f2b940c2afa6fada63e8d55e9074667b1531 100644 --- a/pkgs/applications/misc/opentx/default.nix +++ b/pkgs/applications/misc/opentx/default.nix @@ -1,5 +1,5 @@ { stdenv, fetchFromGitHub -, cmake, gcc-arm-embedded, python +, cmake, gcc-arm-embedded, binutils-arm-embedded, python , qt5, SDL, gmock , dfu-util, avrdude }: @@ -21,10 +21,12 @@ in stdenv.mkDerivation { enableParallelBuilding = true; - nativeBuildInputs = [ cmake ]; + nativeBuildInputs = [ + cmake + gcc-arm-embedded binutils-arm-embedded + ]; buildInputs = with qt5; [ - gcc-arm-embedded python python.pkgs.pyqt4 qtbase qtmultimedia qttranslations SDL gmock @@ -40,6 +42,7 @@ in stdenv.mkDerivation { # XXX I would prefer to include these here, though we will need to file a bug upstream to get that changed. #"-DDFU_UTIL_PATH=${dfu-util}/bin/dfu-util" #"-DAVRDUDE_PATH=${avrdude}/bin/avrdude" + "-DNANO=OFF" ]; meta = with stdenv.lib; { diff --git a/pkgs/applications/misc/osmium-tool/default.nix b/pkgs/applications/misc/osmium-tool/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..36e58cf5070b77e611c11d1d6413cbaf5d6505fc --- /dev/null +++ b/pkgs/applications/misc/osmium-tool/default.nix @@ -0,0 +1,23 @@ +{ stdenv, fetchFromGitHub, cmake, libosmium, protozero, boost, bzip2, zlib, expat }: + +stdenv.mkDerivation rec { + name = "osmium-tool-${version}"; + version = "1.9.1"; + + src = fetchFromGitHub { + owner = "osmcode"; + repo = "osmium-tool"; + rev = "v${version}"; + sha256 = "1cwabjbrdpqbi2gl7448sgniiwwa73avi9l6pnvh4r0jia2wi5wk"; + }; + + nativeBuildInputs = [ cmake ]; + buildInputs = [ libosmium protozero boost bzip2 zlib expat ]; + + meta = with stdenv.lib; { + description = "Multipurpose command line tool for working with OpenStreetMap data based on the Osmium library"; + homepage = "https://osmcode.org/osmium-tool/"; + license = with licenses; [ gpl3 mit bsd3 ]; + maintainers = with maintainers; [ das-g ]; + }; +} diff --git a/pkgs/applications/misc/pbpst/default.nix b/pkgs/applications/misc/pbpst/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..fcf88200133c4282148a2dea294e601a0cd56bd1 --- /dev/null +++ b/pkgs/applications/misc/pbpst/default.nix @@ -0,0 +1,49 @@ +{ llvmPackages, stdenv, fetchFromGitHub +, python36Packages, which, pkgconfig, curl, git, gettext, jansson + +# Optional overrides +, maxFileSize ? 64 # in MB +, provider ? "https://ptpb.pw/" +}: + +llvmPackages.stdenv.mkDerivation rec { + version = "unstable-2018-01-11"; + name = "pbpst-${version}"; + + src = fetchFromGitHub { + owner = "HalosGhost"; + repo = "pbpst"; + rev = "ecbe08a0b72a6e4212f09fc6cf52a73506992346"; + sha256 = "0dwhmw1dg4hg75nlvk5kmvv3slz2n3b9x65q4ig16agwqfsp4mdm"; + }; + + nativeBuildInputs = [ + python36Packages.sphinx + which + pkgconfig + curl + git + gettext + ]; + buildInputs = [ curl jansson ]; + + patchPhase = '' + patchShebangs ./configure + + # Remove hardcoded check for libs in /usr/lib/ + sed -e '64,67d' -i ./configure + ''; + + configureFlags = [ + "--file-max=${toString (maxFileSize * 1024 * 1024)}" # convert to bytes + "--provider=${provider}" + ]; + + meta = with stdenv.lib; { + description = "A command-line libcurl C client for pb deployments"; + inherit (src.meta) homepage; + license = licenses.gpl2; + platforms = platforms.linux; + maintainers = with maintainers; [ tmplt ]; + }; +} diff --git a/pkgs/applications/misc/polar-bookshelf/default.nix b/pkgs/applications/misc/polar-bookshelf/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..1a46b275a5e3931c82b4666ca268ebbbf045c5af --- /dev/null +++ b/pkgs/applications/misc/polar-bookshelf/default.nix @@ -0,0 +1,87 @@ +{ stdenv, lib, makeWrapper, fetchurl +, dpkg, wrapGAppsHook, autoPatchelfHook +, gtk3, cairo, gnome2, atk, gdk_pixbuf, glib +, at-spi2-atk, dbus, libX11, libxcb, libXi +, libXcursor, libXdamage, libXrandr, libXcomposite +, libXext, libXfixes, libXrender, libXtst, libXScrnSaver +, nss, nspr, alsaLib, cups, fontconfig, expat +, libudev0-shim, glibc, curl, openssl, libnghttp2, gnome3 }: + + +stdenv.mkDerivation rec { + name = "polar-bookshelf-${version}"; + version = "1.0.11"; + + # fetching a .deb because there's no easy way to package this Electron app + src = fetchurl { + url = "https://github.com/burtonator/polar-bookshelf/releases/download/v${version}/polar-bookshelf-${version}-amd64.deb"; + sha256 = "11rrwd5cr984nhgrib12hx6k74hzgmb3cfk6qnr1l604dk9pqfqx"; + }; + + buildInputs = [ + gnome3.gsettings_desktop_schemas + glib + gtk3 + cairo + gnome2.pango + atk + gdk_pixbuf + at-spi2-atk + dbus + libX11 + libxcb + libXi + libXcursor + libXdamage + libXrandr + libXcomposite + libXext + libXfixes + libXrender + libXtst + libXScrnSaver + nss + nspr + alsaLib + cups + fontconfig + expat + ]; + + nativeBuildInputs = [ + wrapGAppsHook + autoPatchelfHook + makeWrapper + dpkg + ]; + + runtimeLibs = lib.makeLibraryPath [ libudev0-shim glibc curl openssl libnghttp2 ]; + + unpackPhase = "dpkg-deb -x $src ."; + + installPhase = '' + mkdir -p $out/share/polar-bookshelf + mkdir -p $out/bin + mkdir -p $out/lib + + mv opt/Polar\ Bookshelf/* $out/share/polar-bookshelf + mv $out/share/polar-bookshelf/*.so $out/lib + + mv usr/share/* $out/share/ + + ln -s $out/share/polar-bookshelf/polar-bookshelf $out/bin/polar-bookshelf + ''; + + preFixup = '' + gappsWrapperArgs+=(--prefix LD_LIBRARY_PATH : "${runtimeLibs}" ) + ''; + + meta = { + homepage = https://getpolarized.io/; + description = "Personal knowledge repository for PDF and web content supporting incremental reading and document annotation"; + license = stdenv.lib.licenses.gpl3; + platforms = stdenv.lib.platforms.linux; + maintainers = [ stdenv.lib.maintainers.noneucat ]; + }; + +} diff --git a/pkgs/applications/misc/polybar/default.nix b/pkgs/applications/misc/polybar/default.nix index 0c358e4221a1ac0876949c9638e44db9fed14b79..9756e8ca6c4fd8765cb254e8fa5a05236ff6ebd4 100644 --- a/pkgs/applications/misc/polybar/default.nix +++ b/pkgs/applications/misc/polybar/default.nix @@ -64,10 +64,15 @@ stdenv.mkDerivation rec { (if i3Support || i3GapsSupport then makeWrapper else null) ]; - fixupPhase = if (i3Support || i3GapsSupport) then '' - wrapProgram $out/bin/polybar \ - --prefix PATH : "${if i3Support then i3 else i3-gaps}/bin" - '' else null; + postConfigure = '' + substituteInPlace ../include/settings.hpp --replace \ + "${stdenv.cc}" "${stdenv.cc.name}" + ''; + + postInstall = if (i3Support || i3GapsSupport) then '' + wrapProgram $out/bin/polybar \ + --prefix PATH : "${if i3Support then i3 else i3-gaps}/bin" + '' else ""; nativeBuildInputs = [ cmake pkgconfig diff --git a/pkgs/applications/misc/qtbitcointrader/default.nix b/pkgs/applications/misc/qtbitcointrader/default.nix index 90908c67b4e0cacb55a31d89daf995b4e0d6efe0..4865ed7ee0000c8f84f72ec7c6482de41093059d 100644 --- a/pkgs/applications/misc/qtbitcointrader/default.nix +++ b/pkgs/applications/misc/qtbitcointrader/default.nix @@ -1,14 +1,14 @@ { stdenv, fetchurl, qt5 }: let - version = "1.40.13"; + version = "1.40.23"; in stdenv.mkDerivation { name = "qtbitcointrader-${version}"; src = fetchurl { url = "https://github.com/JulyIGHOR/QtBitcoinTrader/archive/v${version}.tar.gz"; - sha256 = "0d6b9ls742nghzg5y97dx7myvv8i88f0s27lhr52yy4833hdxdwn"; + sha256 = "11r2jzb09a62hf9fkg6aw8pg2js8c87k6lba9xz2q8n6d6jv44r1"; }; buildInputs = [ qt5.qtbase qt5.qtmultimedia qt5.qtscript ]; diff --git a/pkgs/applications/misc/regextester/default.nix b/pkgs/applications/misc/regextester/default.nix index c1b1cfb48a281d0a96975588a840c2794ed789a0..6f056292d775a2008ec99a3969b6823073802524 100644 --- a/pkgs/applications/misc/regextester/default.nix +++ b/pkgs/applications/misc/regextester/default.nix @@ -3,47 +3,51 @@ , gettext , libxml2 , pkgconfig -, gtk3 +, glib , granite +, gtk3 , gnome3 -, cmake +, meson , ninja -, vala -, elementary-cmake-modules +, gobjectIntrospection +, gsettings-desktop-schemas +, vala_0_40 , wrapGAppsHook }: stdenv.mkDerivation rec { name = "regextester-${version}"; - version = "0.1.7"; + version = "1.0.1"; src = fetchFromGitHub { owner = "artemanufrij"; repo = "regextester"; rev = version; - sha256 = "07shdm10dc7jz2hka5dc51yp81a0dgc47nmkrp6fs6r9wqx0j30n"; + sha256 = "1xwwv1hccni1mrbl58f7ly4qfq6738vn24bcbl2q346633cd7kx3"; }; - XDG_DATA_DIRS = stdenv.lib.concatStringsSep ":" [ - "${granite}/share" - "${gnome3.libgee}/share" - ]; - nativeBuildInputs = [ pkgconfig - wrapGAppsHook - vala - cmake + meson ninja gettext + gobjectIntrospection libxml2 - elementary-cmake-modules + vala_0_40 # should be `elementary.vala` when elementary attribute set is merged + wrapGAppsHook ]; buildInputs = [ - gtk3 + glib granite + gtk3 + gnome3.defaultIconTheme gnome3.libgee + gsettings-desktop-schemas ]; + postInstall = '' + ${glib.dev}/bin/glib-compile-schemas $out/share/glib-2.0/schemas + ''; + meta = with stdenv.lib; { description = "A desktop application to test regular expressions interactively"; homepage = https://github.com/artemanufrij/regextester; diff --git a/pkgs/applications/misc/tootle/default.nix b/pkgs/applications/misc/tootle/default.nix index d15b8111fb0b92a50b21fda223f93f5446efde44..d7a7de36877615e0fb78acc022d22740ded71945 100644 --- a/pkgs/applications/misc/tootle/default.nix +++ b/pkgs/applications/misc/tootle/default.nix @@ -7,7 +7,7 @@ let pname = "tootle"; - version = "0.1.5"; + version = "0.2.0"; in stdenv.mkDerivation rec { name = "${pname}-${version}"; @@ -15,7 +15,7 @@ in stdenv.mkDerivation rec { owner = "bleakgrey"; repo = pname; rev = version; - sha256 = "022h1rh1jk3m1f9al0s1rylmnqnkydyc81idfc8jf1g0frnvn5i6"; + sha256 = "1z3wyx316nns6gi7vlvcfmalhvxncmvcmmlgclbv6b6hwl5x2ysi"; }; nativeBuildInputs = [ meson ninja pkgconfig python3 vala gobjectIntrospection wrapGAppsHook ]; diff --git a/pkgs/applications/misc/tzupdate/default.nix b/pkgs/applications/misc/tzupdate/default.nix index 3a723907c925d0f7c5ceb35dee0e9bdfdafee2d6..a5d2f206f3a52ce15657be70030009e8362c44d6 100644 --- a/pkgs/applications/misc/tzupdate/default.nix +++ b/pkgs/applications/misc/tzupdate/default.nix @@ -5,11 +5,11 @@ let in buildPythonApplication rec { pname = "tzupdate"; - version = "1.2.0"; + version = "1.3.1"; src = fetchPypi { inherit pname version; - sha256 = "1wj2r1wirnn5kllaasdldimvp3cc3w7w890iqrjksz5wwjbnj8pk"; + sha256 = "085kp4v9ijhkfvr0r5rzn4z7nrkb2qig05j0bajb0gkgynwf8wnz"; }; propagatedBuildInputs = [ requests ]; diff --git a/pkgs/applications/misc/urh/default.nix b/pkgs/applications/misc/urh/default.nix index 2d370113873e65d704f915b0eff21c4b527a1b0d..b406df5b1e2183436306921d905908f177886bb9 100644 --- a/pkgs/applications/misc/urh/default.nix +++ b/pkgs/applications/misc/urh/default.nix @@ -1,4 +1,5 @@ -{ stdenv, fetchFromGitHub, python3Packages, hackrf, rtl-sdr }: +{ stdenv, fetchFromGitHub, python3Packages +, hackrf, rtl-sdr, airspy, limesuite }: python3Packages.buildPythonApplication rec { name = "urh-${version}"; @@ -11,7 +12,7 @@ python3Packages.buildPythonApplication rec { sha256 = "0cwbqcv0yffg6fa3g4zknwffa6119i6827w6jm74fhlfa9kwy34c"; }; - buildInputs = [ hackrf rtl-sdr ]; + buildInputs = [ hackrf rtl-sdr airspy limesuite ]; propagatedBuildInputs = with python3Packages; [ pyqt5 numpy psutil cython pyzmq ]; diff --git a/pkgs/applications/misc/visidata/default.nix b/pkgs/applications/misc/visidata/default.nix index dd95b231bd131372bb11eaeedd3022372e0c56c4..20e3c3daccb09ce2777077a2525499e25a42e9f4 100644 --- a/pkgs/applications/misc/visidata/default.nix +++ b/pkgs/applications/misc/visidata/default.nix @@ -4,13 +4,13 @@ buildPythonApplication rec { name = "${pname}-${version}"; pname = "visidata"; - version = "1.3.1"; + version = "1.5"; src = fetchFromGitHub { owner = "saulpw"; repo = "visidata"; rev = "v${version}"; - sha256 = "1d5sx1kfil1vjkynaac5sjsnn9azxxw834gwbh9plzd5fwxg4dz2"; + sha256 = "0schpfksxddbsv0s54pv1jrf151nw9kr51m41fp0ycnw7z2jqirm"; }; propagatedBuildInputs = [dateutil pyyaml openpyxl xlrd h5py fonttools diff --git a/pkgs/applications/misc/welle-io/default.nix b/pkgs/applications/misc/welle-io/default.nix index 410346bce9adfb7e790e2981a5a85db3e4193392..fae591d7ee03528d221d8d434eeaa02497278605 100644 --- a/pkgs/applications/misc/welle-io/default.nix +++ b/pkgs/applications/misc/welle-io/default.nix @@ -3,7 +3,7 @@ , faad2, rtl-sdr, soapysdr-with-plugins, libusb, fftwSinglePrec }: let - version = "1.0-rc2"; + version = "1.0"; in stdenv.mkDerivation { @@ -13,7 +13,7 @@ in stdenv.mkDerivation { owner = "AlbrechtL"; repo = "welle.io"; rev = "V${version}"; - sha256 = "01x4ldq6lvmdrmxi857594nj9xpn2h7848vvf3f54sh1zrawn4k4"; + sha256 = "1fsr0c2w16z45mcr85sqmllw1xf2gn6hp6f6fmgx2zfprq8gdmcr"; }; nativeBuildInputs = [ cmake pkgconfig ]; diff --git a/pkgs/applications/misc/xca/default.nix b/pkgs/applications/misc/xca/default.nix index 7b95cf002ca1c407a6adbde0040fa400f2ad2bfb..280b30128727d13bb0826ed15cda0b0a704d73fb 100644 --- a/pkgs/applications/misc/xca/default.nix +++ b/pkgs/applications/misc/xca/default.nix @@ -3,13 +3,13 @@ mkDerivation rec { name = "xca-${version}"; - version = "2.1.1"; + version = "2.1.2"; src = fetchFromGitHub { owner = "chris2511"; repo = "xca"; rev = "RELEASE.${version}"; - sha256 = "1d09329a80axwqhxixwasd8scsmh23vsq1076amy5c8173s4ambi"; + sha256 = "0slfqmz0b01lwmrv4h78hmrsdrhcyc7sjzsxcw05ylgmhvdq3dw9"; }; postPatch = '' diff --git a/pkgs/applications/misc/xmr-stak/default.nix b/pkgs/applications/misc/xmr-stak/default.nix index ed90689da1ea89a80e857c14ed4e161adf7223de..8149c6fe85311ef3725bf7cf67ff4610ccd1a944 100644 --- a/pkgs/applications/misc/xmr-stak/default.nix +++ b/pkgs/applications/misc/xmr-stak/default.nix @@ -12,13 +12,13 @@ in stdenv'.mkDerivation rec { name = "xmr-stak-${version}"; - version = "2.5.1"; + version = "2.5.2"; src = fetchFromGitHub { owner = "fireice-uk"; repo = "xmr-stak"; rev = "${version}"; - sha256 = "0n042vxrr52k6x86h06f298flmxghsfh2a3kqnc41r7p7qybgjj8"; + sha256 = "0fk51s0789arwkidgx4c5y4shdvawwc132dzn8z71fpi6kh6ggvm"; }; NIX_CFLAGS_COMPILE = "-O3"; diff --git a/pkgs/applications/misc/zathura/pdf-mupdf/default.nix b/pkgs/applications/misc/zathura/pdf-mupdf/default.nix index 9d86dfe4a445d9c7f0c7056836db1d142f4e81c7..709c1edb0b8391c023ec52fc90265787b713fbb6 100644 --- a/pkgs/applications/misc/zathura/pdf-mupdf/default.nix +++ b/pkgs/applications/misc/zathura/pdf-mupdf/default.nix @@ -1,13 +1,20 @@ -{ stdenv, lib, meson, ninja, fetchurl, pkgconfig, zathura_core, cairo, -gtk-mac-integration, girara, mupdf }: +{ stdenv, lib, meson, ninja, fetchurl, fetchFromGitHub +, pkgconfig, zathura_core, cairo , gtk-mac-integration, girara, mupdf }: stdenv.mkDerivation rec { - version = "0.3.3"; + version = "0.3.4"; name = "zathura-pdf-mupdf-${version}"; - src = fetchurl { - url = "https://pwmt.org/projects/zathura-pdf-mupdf/download/${name}.tar.xz"; - sha256 = "1zbdqimav4wfgimpy3nfzl10qj7vyv23rdy2z5z7z93jwbp2rc2j"; + # pwmt.org server was down at the time of last update + # src = fetchurl { + # url = "https://pwmt.org/projects/zathura-pdf-mupdf/download/${name}.tar.xz"; + # sha256 = "1zbaqimav4wfgimpy3nfzl10qj7vyv23rdy2z5z7z93jwbp2rc2j"; + # }; + src = fetchFromGitHub { + owner = "pwmt"; + repo = "zathura-pdf-mupdf"; + rev = version; + sha256 = "1m4w4jrybpjmx6pi33a5saxzmfd8rrym2k13jpd1fv543s17d9dy"; }; nativeBuildInputs = [ meson ninja pkgconfig ]; diff --git a/pkgs/applications/networking/browsers/brave/default.nix b/pkgs/applications/networking/browsers/brave/default.nix index d097e0b448ca075139b15ed3c04e42cb0c6c99c2..3c0993d87339fba8cd2aa0fc637e5dcc4bac8672 100644 --- a/pkgs/applications/networking/browsers/brave/default.nix +++ b/pkgs/applications/networking/browsers/brave/default.nix @@ -30,7 +30,8 @@ pango, udev, xorg, - zlib + zlib, + xdg_utils }: let rpath = lib.makeLibraryPath [ @@ -65,32 +66,67 @@ let rpath = lib.makeLibraryPath [ udev xorg.libxcb zlib + xdg_utils ]; in stdenv.mkDerivation rec { name = "brave"; - version = "0.25.2"; + version = "0.56.12"; src = fetchurl { - url = "https://github.com/brave/browser-laptop/releases/download/v${version}dev/brave_${version}_amd64.deb"; - sha256 = "1r3rsa6szps7mvvpqyw0mg16zn36x451dxq4nmn2l5ds5cp1f017"; + url = "https://github.com/brave/brave-browser/releases/download/v${version}/brave-browser_${version}_amd64.deb"; + sha256 = "1pvablwchpsm1fdhfp9kr2912yv4812r8prv5fn799qpflzxvyai"; }; - phases = [ "unpackPhase" "installPhase" ]; + dontConfigure = true; + dontBuild = true; + dontPatchELF = true; nativeBuildInputs = [ dpkg ]; - unpackPhase = "dpkg-deb -x $src ."; + unpackPhase = "dpkg-deb --fsys-tarfile $src | tar -x --no-same-permissions --no-same-owner"; installPhase = '' mkdir -p $out cp -R usr/* $out + cp -R opt/ $out/opt + + export BINARYWRAPPER=$out/opt/brave.com/brave/brave-browser + + # Fix path to bash in $BINARYWRAPPER + substituteInPlace $BINARYWRAPPER \ + --replace /bin/bash ${stdenv.shell} + + ln -sf $BINARYWRAPPER $out/bin/brave patchelf \ --set-interpreter "$(cat $NIX_CC/nix-support/dynamic-linker)" \ - --set-rpath "${rpath}" $out/bin/brave + --set-rpath "${rpath}" $out/opt/brave.com/brave/brave + + # Fix paths + substituteInPlace $out/share/applications/brave-browser.desktop \ + --replace /usr/bin/brave-browser $out/bin/brave + substituteInPlace $out/share/gnome-control-center/default-apps/brave-browser.xml \ + --replace /opt/brave.com $out/opt/brave.com + substituteInPlace $out/share/menu/brave-browser.menu \ + --replace /opt/brave.com $out/opt/brave.com + substituteInPlace $out/opt/brave.com/brave/default-app-block \ + --replace /opt/brave.com $out/opt/brave.com + + # Correct icons location + icon_sizes=("16" "22" "24" "32" "48" "64" "128" "256") + + for icon in ''${icon_sizes[*]} + do + mkdir -p $out/share/icons/hicolor/$icon\x$icon/apps + ln -s $out/opt/brave.com/brave/product_logo_$icon.png $out/share/icons/hicolor/$icon\x$icon/apps/brave-browser.png + done + + # Replace xdg-settings and xdg-mime + ln -sf ${xdg_utils}/bin/xdg-settings $out/opt/brave.com/brave/xdg-settings + ln -sf ${xdg_utils}/bin/xdg-mime $out/opt/brave.com/brave/xdg-mime ''; meta = with stdenv.lib; { diff --git a/pkgs/applications/networking/browsers/chromium/common.nix b/pkgs/applications/networking/browsers/chromium/common.nix index a011d0a892e9130d427828ac0a0d614caae967c4..661985086061a94ca8c171629beb3941f6114f5c 100644 --- a/pkgs/applications/networking/browsers/chromium/common.nix +++ b/pkgs/applications/networking/browsers/chromium/common.nix @@ -222,6 +222,8 @@ let use_gold = true; gold_path = "${stdenv.cc}/bin"; is_debug = false; + # at least 2X compilation speedup + use_jumbo_build = true; proprietary_codecs = false; use_sysroot = false; diff --git a/pkgs/applications/networking/browsers/chromium/upstream-info.nix b/pkgs/applications/networking/browsers/chromium/upstream-info.nix index 8162f43776dac3bbdf7ce64f99cd781f06e2e683..9f6e304c21e637a899bf9d435ce49d6a5f1a908a 100644 --- a/pkgs/applications/networking/browsers/chromium/upstream-info.nix +++ b/pkgs/applications/networking/browsers/chromium/upstream-info.nix @@ -1,18 +1,18 @@ # This file is autogenerated from update.sh in the same directory. { beta = { - sha256 = "0kkdfp5f3gmzngfj1nfw023bpyvm47h94k9rpwml2kxlijswd1gl"; - sha256bin64 = "13ghx5ysl8f2iphdvjh698q4jksh765ljjrd74m6x0ih6qm0ksaq"; - version = "71.0.3578.20"; + sha256 = "04y78dqm19cr5929l727fk0jqqsdfyrdv50gippg32dplvw0r4fw"; + sha256bin64 = "1rfclq9vwj61pv1sqpa4v26iby02j05lad673c79f0032v2v2r43"; + version = "71.0.3578.44"; }; dev = { - sha256 = "1d7q8hbqbxy2izdvv4d9126ljiglsfc3w7wns3zbbbiyqa2rj00y"; - sha256bin64 = "0v6yahsvsgxcqg6k84lgr589rnx9af1r2axn7cggyn1a2lk63jck"; - version = "72.0.3590.0"; + sha256 = "1d18957kwy3hp3dhgahip3pgjhvvadix5h3mk2d7w6zdj3l8c8kq"; + sha256bin64 = "1yny1hyis91ajn7b8v9b4fzgswzwng3rndf1jb807xd6jd461afz"; + version = "72.0.3608.4"; }; stable = { - sha256 = "0j84556r3m4igigqsx9zvw4kvbn4psfsi7m8xhcvfxc39ingh569"; - sha256bin64 = "082cf9d1wm36w4i09ai4xnprvxfqdar6cbgsxz5q5srd41mqdy6p"; - version = "70.0.3538.77"; + sha256 = "0amc3czac897mb80qcwwladmhg2yps8r2c359nzyj7i7bq1m992d"; + sha256bin64 = "1did6kp7dhlqp7rarvly7ywb9n9hnhhb3zgpkh3yp3f2skqrr5w8"; + version = "70.0.3538.102"; }; } diff --git a/pkgs/applications/networking/browsers/falkon/default.nix b/pkgs/applications/networking/browsers/falkon/default.nix index 21631ef191c487a15d12b30b94414070927b42c3..ff16ddb90f694941b5bd8c4fe1fb24f3f117cfaa 100644 --- a/pkgs/applications/networking/browsers/falkon/default.nix +++ b/pkgs/applications/networking/browsers/falkon/default.nix @@ -1,5 +1,9 @@ -{ stdenv, fetchFromGitHub, cmake, extra-cmake-modules, pkgconfig, qmake -, libpthreadstubs, libxcb, libXdmcp, qtsvg, qttools, qtwebengine, qtx11extras, kwallet }: +{ stdenv, lib, fetchFromGitHub, cmake, extra-cmake-modules, pkgconfig, qmake +, libpthreadstubs, libxcb, libXdmcp +, qtsvg, qttools, qtwebengine, qtx11extras +, qtwayland +, kwallet +}: stdenv.mkDerivation rec { name = "falkon-${version}"; @@ -21,9 +25,9 @@ stdenv.mkDerivation rec { buildInputs = [ libpthreadstubs libxcb libXdmcp + qtsvg qttools qtwebengine qtx11extras kwallet - qtsvg qtwebengine qtx11extras - ]; + ] ++ lib.optionals stdenv.isLinux [ qtwayland ]; nativeBuildInputs = [ cmake extra-cmake-modules pkgconfig qmake qttools ]; diff --git a/pkgs/applications/networking/browsers/firefox-bin/beta_sources.nix b/pkgs/applications/networking/browsers/firefox-bin/beta_sources.nix index 8c3d7dc7a4a3de53f0bb2be6276ebec08e9d8f83..2089b1c5e22fb3b18bf7a616f7f433941dc3e604 100644 --- a/pkgs/applications/networking/browsers/firefox-bin/beta_sources.nix +++ b/pkgs/applications/networking/browsers/firefox-bin/beta_sources.nix @@ -1,995 +1,995 @@ { - version = "64.0b3"; + version = "64.0b5"; sources = [ - { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b3/linux-x86_64/ach/firefox-64.0b3.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b5/linux-x86_64/ach/firefox-64.0b5.tar.bz2"; locale = "ach"; 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} ]; } diff --git a/pkgs/applications/networking/browsers/firefox-bin/release_sources.nix b/pkgs/applications/networking/browsers/firefox-bin/release_sources.nix index 54b588fb097995312cf4a1a29e80191d19dd2daf..9f81a2fda3882bc197ef5a616c2f057728faefa7 100644 --- a/pkgs/applications/networking/browsers/firefox-bin/release_sources.nix +++ b/pkgs/applications/networking/browsers/firefox-bin/release_sources.nix @@ -1,995 +1,995 @@ { - version = "63.0"; + version = "63.0.1"; sources = [ - { url = "http://archive.mozilla.org/pub/firefox/releases/63.0/linux-x86_64/ach/firefox-63.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/63.0.1/linux-x86_64/ach/firefox-63.0.1.tar.bz2"; locale = "ach"; arch = "linux-x86_64"; - sha512 = "0557937473fe8758371d21ec4b0d983ac2db59e8b9d3d627a318d3adf9a0cd0712f3e9b375f0cd6d9acf3f39b0c42fbcdb31364c5973916c7287f618a5f074ec"; + sha512 = "fcf06e003f7e3bfc79288d9f0199ad2ca13a91eee718437d25c745381dbb351483b992b0cad929e9c869d4a993eee66b2206ddb6e98023f12f4351f41e61313b"; 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} - { url = "http://archive.mozilla.org/pub/firefox/releases/63.0/linux-i686/son/firefox-63.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/63.0.1/linux-i686/son/firefox-63.0.1.tar.bz2"; locale = "son"; arch = "linux-i686"; - sha512 = "63f104da43ff4103b40e271de6c962fae3d77891f50fe5b39698d3c2e382b4234dad41a3a64794015ad88d34a7e2b819c0ecb62b1bb44a4d8e83eadbc1803151"; + sha512 = "55ea357bf7f6ddb7e8b51796ef199168c89ff5959e5e64fdbe8e362bfb1efa19f9f407c20510139c52cf44058a5c4823b2c1c10821a2ee06a18b19d48a85a403"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/63.0/linux-i686/sq/firefox-63.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/63.0.1/linux-i686/sq/firefox-63.0.1.tar.bz2"; locale = "sq"; arch = "linux-i686"; - sha512 = "534ce38e5dec85de50e9dd541f6d8445e95fdfac074a51866c993e97d020b9a310abebffa2162fc513572d202f9fec8e3a267207bf9c401b27c8541534ee2aaf"; + sha512 = "5fd975a71f9899b9eb90f46adaab044c2d21ac64cc71558748368c41bc50ea8ae688fffb0579693633f1ed82970917e1b46a41133af3133950dfb051c33556a1"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/63.0/linux-i686/sr/firefox-63.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/63.0.1/linux-i686/sr/firefox-63.0.1.tar.bz2"; locale = "sr"; arch = "linux-i686"; - sha512 = "1174da8c998cdd62370bb8c80c6a47360cdcc84144b03ab33f10367b5622ecf6ff3058e4f525e46ddb523f13e29b6fe557b7442dfec92956b34eaf507bd5f8c8"; + sha512 = "e8cc283b6d87718f81a619e0c54a2e440e21940375f8eabb318d24c22b5e04fa387d27dd6b2c28c98c65a94cc8aa1966ea8c6ac346f3012df0a6f268c9aac67a"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/63.0/linux-i686/sv-SE/firefox-63.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/63.0.1/linux-i686/sv-SE/firefox-63.0.1.tar.bz2"; locale = "sv-SE"; arch = "linux-i686"; - sha512 = "7c24f0d4552ca7bc3076b9b0485c757e0547713a58d09cd568e506e37dd6133c5c7a7ad3edcffdd387cc0c5661d3602f4252d778174bf78812788ad1daa9384a"; + sha512 = "324c7b8b0b313d9de9d83f05d2e802c9733537a5bc1a77bc7335f2551f1466da9c276622a848440e7a353f944e463e1b323fea7655985cf755b38c80e17fe335"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/63.0/linux-i686/ta/firefox-63.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/63.0.1/linux-i686/ta/firefox-63.0.1.tar.bz2"; locale = "ta"; arch = "linux-i686"; - sha512 = "4387b1cfd77da777a3257e714b014c686ad8c5ff1edb7ba0e2d01f62621eaec92766ccc3bbeb93be45c0b414b9b31676692e75b366a7ed0fb8e0526f95126807"; + sha512 = "6f35862c7052f55b06ffcf0205331288c4278fd2de713c57a509543a02394978a9726fe747709f4972ee2c43a5a001c0f7c5e58e63269047abcb5f4f26e78ff3"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/63.0/linux-i686/te/firefox-63.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/63.0.1/linux-i686/te/firefox-63.0.1.tar.bz2"; locale = "te"; arch = "linux-i686"; - sha512 = "8ad96e47cfc1066d27560a5ad26659dba098724374605520198d580867be3bcc05a63120865745055ef00163b8c7cb97ac35f18bfcdc3d171e7eed6a05f50855"; + sha512 = "4a5534580d90af3f27ab1d66f54f38782179ab239ad913153660539591001db9dad409ef849df97f5f382388f559eef336c2f9245180704caf9d414e0965c17c"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/63.0/linux-i686/th/firefox-63.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/63.0.1/linux-i686/th/firefox-63.0.1.tar.bz2"; locale = "th"; arch = "linux-i686"; - sha512 = "74272739144c6ae69dba8229420894b10e0dd9d75ae386f1221b17f8e54baf8c3d921591c5707ab5d8847deedad2daa3061fff03add11a2e450fdf691dd49f9a"; + sha512 = "1a21c20e0f410aaff94eb4dee6f26555515c0095aae9cc5e7ec8c90e57bbc73e8dd5a931b9f6fae52d5ebf7de4a3aea2176b973effe3e65e844e1936387ed8d6"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/63.0/linux-i686/tr/firefox-63.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/63.0.1/linux-i686/tr/firefox-63.0.1.tar.bz2"; locale = "tr"; arch = "linux-i686"; - sha512 = "0cddf14cd7a7cd4594ca04d1416b3ab32db42a287e62b68197fe8e08078999028e47074e563302c77e480d02563932d20ceffdd89c53b53c79221f3cc309e802"; + sha512 = "1e69c3de2d1836082369994ea843e164212527a13808153b16c02e5a3986a3f11c87abbe0fb2eb9077f1273ff14cbb545856c376945a9e40143217896a444e17"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/63.0/linux-i686/uk/firefox-63.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/63.0.1/linux-i686/uk/firefox-63.0.1.tar.bz2"; locale = "uk"; arch = "linux-i686"; - sha512 = "17e3d498e900ddfc4b00e3ea99b7b2f55c0252e88eede45b47b020293131d6adf5642c1bf94c39bba5b9042e2f9e20ba5399e6717e6965e65d90c4717a236832"; + sha512 = "87c4e1b907db9bdce6d8dcd2e4c70d57a4e8ce5125473727582987c2eea25543d2d97596d0f3c776962c003f2a5356260d3d9f18410448dec4198fead5461da1"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/63.0/linux-i686/ur/firefox-63.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/63.0.1/linux-i686/ur/firefox-63.0.1.tar.bz2"; locale = "ur"; arch = "linux-i686"; - sha512 = "cef0ade8282d3360e27d51b4c5487882ae8dc78c598b4150cd3053cc442843cd58f5c362ed6c5ea8362517633dfbb2751a894c6cbc45bac796c181f32f095dc8"; + sha512 = "533dc9eefd4b7604d92420333aa4f6e1b741ac545814ec1a868393e321d3e84e5d3ba475a98cf1e226b746f1f6b5b42db082d7a6d65b10971b2576e0a3d4cc69"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/63.0/linux-i686/uz/firefox-63.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/63.0.1/linux-i686/uz/firefox-63.0.1.tar.bz2"; locale = "uz"; arch = "linux-i686"; - sha512 = "e8dc2b26f35f5ddbc93e4891d7b9b4dfd932ba6c7d1da19a6bec1f5c259f78c1c3105d9f2c89cd97c91f4032489f95a339ba5a22dc4daf3c948a968bf580d4bf"; + sha512 = "e3830088e08eb8e16e6d7196e153eddc85bfb1bab3a29904aeb59c427215fdf82d7a5e50ab9db5e7abaa74b88ca7a4c002fef11883ab000b3b10814650d337e6"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/63.0/linux-i686/vi/firefox-63.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/63.0.1/linux-i686/vi/firefox-63.0.1.tar.bz2"; locale = "vi"; arch = "linux-i686"; - sha512 = "6dc0945c634052824326cfe8558d1eddb192dbb4eca9eac458b8cfb3680cb1cf5537dd8ff4237ed32264d730e95287d9504fd0b1528fa33907dc1a2b4558ea61"; + sha512 = "5cfce3e3a278964aec4b8b863caa60618691fcd959009395a705b8ccbc51fb7b30adcc84de3be6e2627329d0d61fc7ab7d6c2ab15f93c255c336f327b8aa8a13"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/63.0/linux-i686/xh/firefox-63.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/63.0.1/linux-i686/xh/firefox-63.0.1.tar.bz2"; locale = "xh"; arch = "linux-i686"; - sha512 = "3792ce77db9de5080437b2aad6537f00963593ff98cdd47a145ffef8243a5ea23e8cd42f82e217885601b04df4c17d833aa88b9d15cad7a6840978af3a756b05"; + sha512 = "61630ecd035d69866d0934f3a4ef4b574c4ae1205af3c130889d1eb132066fd2068a4583eb87b9e214f033184a671bb973368faf417aaa3018e8badd16295592"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/63.0/linux-i686/zh-CN/firefox-63.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/63.0.1/linux-i686/zh-CN/firefox-63.0.1.tar.bz2"; locale = "zh-CN"; arch = "linux-i686"; - sha512 = "8043f8900ef35f85cb05f2092829899d119e079210dcb8bd9d369c7d73ff901e80afc4eecb25421058b65e5e267f7cf671c62cdec5849c2ff0da104f4ec12ad2"; + sha512 = "968987d12dcf4a9ac0e078132ae50b321987c990c9bd8cd3388d981c7e5dc94d26c7af14492e356d2b984badd595998bc7e9f955e0772534b5adf31886c319b6"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/63.0/linux-i686/zh-TW/firefox-63.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/63.0.1/linux-i686/zh-TW/firefox-63.0.1.tar.bz2"; locale = "zh-TW"; arch = "linux-i686"; - sha512 = "614b7835c82f80dd27c841023aca6aa8580bdadac8241f08fc053fe7657f069d6337e3edbe0bebcc4018d47f3d9f2d328176add89aacd9847393ebd21f3e9230"; + sha512 = "286919b5f69f2585c291c0736dec6b37493a809e7e2b342743523d73e749ac4e860236da061ffb14c28452884f72055d47084fa3455898f9afee798c1ec7cdea"; } ]; } diff --git a/pkgs/applications/networking/browsers/firefox/common.nix b/pkgs/applications/networking/browsers/firefox/common.nix index 16c9b548325e640a803cf11a99e47a3f3932baa2..2f0209ed8fd3c1df82100a1e2ba45f9204f8f761 100644 --- a/pkgs/applications/networking/browsers/firefox/common.nix +++ b/pkgs/applications/networking/browsers/firefox/common.nix @@ -18,7 +18,7 @@ ## optional libraries , alsaSupport ? stdenv.isLinux, alsaLib -, pulseaudioSupport ? true, libpulseaudio +, pulseaudioSupport ? stdenv.isLinux, libpulseaudio , ffmpegSupport ? true, gstreamer, gst-plugins-base , gtk3Support ? true, gtk2, gtk3, wrapGAppsHook , gssSupport ? true, kerberos @@ -196,8 +196,7 @@ stdenv.mkDerivation rec { ] ++ lib.optional (stdenv.isDarwin && lib.versionAtLeast ffversion "61") "--disable-xcode-checks" ++ lib.optional (lib.versionOlder ffversion "61") "--enable-system-hunspell" - ++ lib.optionals (lib.versionAtLeast ffversion "56" && !stdenv.hostPlatform.isi686) [ - # on i686-linux: --with-libclang-path is not available in this configuration + ++ lib.optionals (lib.versionAtLeast ffversion "56") [ "--with-libclang-path=${llvmPackages.libclang}/lib" "--with-clang-path=${llvmPackages.clang}/bin/clang" ] diff --git a/pkgs/applications/networking/browsers/firefox/packages.nix b/pkgs/applications/networking/browsers/firefox/packages.nix index 102b0de3fcc146e3ace3fbadd902b2bda99d39f8..81f805feddff165488ff3aea61584004744376cc 100644 --- a/pkgs/applications/networking/browsers/firefox/packages.nix +++ b/pkgs/applications/networking/browsers/firefox/packages.nix @@ -8,22 +8,16 @@ let ./env_var_for_system_dir.patch ]; - firefox60_aarch64_skia_patch = fetchpatch { - name = "aarch64-skia.patch"; - url = https://src.fedoraproject.org/rpms/firefox/raw/8cff86d95da3190272d1beddd45b41de3148f8ef/f/build-aarch64-skia.patch; - sha256 = "11acb0ms4jrswp7268nm2p8g8l4lv8zc666a5bqjbb09x9k6b78k"; - }; - in rec { firefox = common rec { pname = "firefox"; - ffversion = "63.0"; + ffversion = "63.0.1"; src = fetchurl { url = "mirror://mozilla/firefox/releases/${ffversion}/source/firefox-${ffversion}.source.tar.xz"; - sha512 = "095nn50g72l4ihbv26qqqs2jg4ahnmd54vxvm7nxwrnkx901aji7pph6c91zfpf7df26ib1b0pqyir9vsac40sdxc8yrzm6d0lyl1m2"; + sha512 = "29acad70259d71a924cbaf4c2f01fb034cf8090759b3a2d74a5eabc2823f83b6508434e619d8501d3930702e2bbad373581a70e2ce57aead9af77fc42766fbe2"; }; patches = nixpkgsPatches ++ [ @@ -70,10 +64,10 @@ rec { firefox-esr-60 = common rec { pname = "firefox-esr"; - ffversion = "60.2.2esr"; + ffversion = "60.3.0esr"; src = fetchurl { url = "mirror://mozilla/firefox/releases/${ffversion}/source/firefox-${ffversion}.source.tar.xz"; - sha512 = "2h2naaxx4lv90bjpcrsma4sdhl4mvsisx3zi09vakjwv2lad91gy41cmcpqprpcbsmlvpqf8yiv52ah4d02a8d9335xhw2ajw6asjc1"; + sha512 = "7ded25a38835fbd73a58085e24ad83308afee1784a3bf853d75093c1500ad46988f5865c106abdae938cfbd1fb10746cc1795ece7994fd7eba8a002158cf1bcd"; }; patches = nixpkgsPatches ++ [ @@ -82,7 +76,7 @@ rec { # this one is actually an omnipresent bug # https://bugzilla.mozilla.org/show_bug.cgi?id=1444519 ./fix-pa-context-connect-retval.patch - ] ++ lib.optional stdenv.isAarch64 firefox60_aarch64_skia_patch; + ]; meta = firefox.meta // { description = "A web browser built from Firefox Extended Support Release source tree"; diff --git a/pkgs/applications/networking/browsers/google-chrome/default.nix b/pkgs/applications/networking/browsers/google-chrome/default.nix index 0d86e4f8294c7961e614c8a4d9068ee7ed136d27..6043744f296c6b8f1509f918efc74bf43d928e17 100644 --- a/pkgs/applications/networking/browsers/google-chrome/default.nix +++ b/pkgs/applications/networking/browsers/google-chrome/default.nix @@ -4,7 +4,7 @@ , glib, fontconfig, freetype, pango, cairo, libX11, libXi, atk, gconf, nss, nspr , libXcursor, libXext, libXfixes, libXrender, libXScrnSaver, libXcomposite, libxcb , alsaLib, libXdamage, libXtst, libXrandr, expat, cups -, dbus, gtk2, gtk3, gdk_pixbuf, gcc-unwrapped, at-spi2-atk +, dbus, gtk2, gtk3, gdk_pixbuf, gcc-unwrapped, at-spi2-atk, at-spi2-core , kerberos # command line arguments which are always set e.g "--disable-gpu" @@ -57,7 +57,7 @@ let libexif liberation_ttf curl utillinux xdg_utils wget flac harfbuzz icu libpng opusWithCustomModes snappy speechd - bzip2 libcap at-spi2-atk + bzip2 libcap at-spi2-atk at-spi2-core kerberos ] ++ optional pulseSupport libpulseaudio ++ [ gtk ]; diff --git a/pkgs/applications/networking/browsers/mozilla-plugins/flashplayer/default.nix b/pkgs/applications/networking/browsers/mozilla-plugins/flashplayer/default.nix index 38b064ec6e292cd40ae83497875f139a880b043d..7a26a4d197007df7f881ab5b703515e6a9e141e9 100644 --- a/pkgs/applications/networking/browsers/mozilla-plugins/flashplayer/default.nix +++ b/pkgs/applications/networking/browsers/mozilla-plugins/flashplayer/default.nix @@ -33,6 +33,7 @@ , libXxf86vm , libdrm , libffi +, libglvnd , libpng , libvdpau , libxcb @@ -132,8 +133,8 @@ stdenv.mkDerivation rec { alsaLib atk bzip2 cairo curl expat fontconfig freetype gdk_pixbuf glib glibc graphite2 gtk2 harfbuzz libICE libSM libX11 libXau libXcomposite libXcursor libXdamage libXdmcp libXext libXfixes libXi libXinerama - libXrandr libXrender libXt libXxf86vm libdrm libffi libpng libvdpau - libxcb libxshmfence nspr nss pango pcre pixman zlib + libXrandr libXrender libXt libXxf86vm libdrm libffi libglvnd libpng + libvdpau libxcb libxshmfence nspr nss pango pcre pixman zlib ]; meta = { diff --git a/pkgs/applications/networking/browsers/mozilla-plugins/flashplayer/standalone.nix b/pkgs/applications/networking/browsers/mozilla-plugins/flashplayer/standalone.nix index 108d7c5f4a1ac89828593832dafdd018bd486e29..5c4d0540289bf27e3b128eb04b739296a4348e19 100644 --- a/pkgs/applications/networking/browsers/mozilla-plugins/flashplayer/standalone.nix +++ b/pkgs/applications/networking/browsers/mozilla-plugins/flashplayer/standalone.nix @@ -33,6 +33,7 @@ , libXxf86vm , libdrm , libffi +, libglvnd , libpng , libvdpau , libxcb @@ -88,8 +89,8 @@ stdenv.mkDerivation rec { alsaLib atk bzip2 cairo curl expat fontconfig freetype gdk_pixbuf glib glibc graphite2 gtk2 harfbuzz libICE libSM libX11 libXau libXcomposite libXcursor libXdamage libXdmcp libXext libXfixes libXi libXinerama - libXrandr libXrender libXt libXxf86vm libdrm libffi libpng libvdpau - libxcb libxshmfence nspr nss pango pcre pixman zlib + libXrandr libXrender libXt libXxf86vm libdrm libffi libglvnd libpng + libvdpau libxcb libxshmfence nspr nss pango pcre pixman zlib ]; meta = { diff --git a/pkgs/applications/networking/browsers/qutebrowser/default.nix b/pkgs/applications/networking/browsers/qutebrowser/default.nix index bf3debf6c7b877e6c088d0237242ba11a1fe28c3..8b7dfc860275e4cef463c9d13835c1288a1e00a7 100644 --- a/pkgs/applications/networking/browsers/qutebrowser/default.nix +++ b/pkgs/applications/networking/browsers/qutebrowser/default.nix @@ -28,12 +28,12 @@ let in python3Packages.buildPythonApplication rec { pname = "qutebrowser"; - version = "1.5.1"; + version = "1.5.2"; # the release tarballs are different from the git checkout! src = fetchurl { url = "https://github.com/qutebrowser/qutebrowser/releases/download/v${version}/${pname}-${version}.tar.gz"; - sha256 = "1yn181gscj04ni58swk6cmggn047q29siqwgn66pvxhfdf0ny7fq"; + sha256 = "0ki19mynq91aih3kxhipnay3jmn56s7p6rilws0gq0k98li6a4my"; }; # Needs tox diff --git a/pkgs/applications/networking/cluster/kubernetes/default.nix b/pkgs/applications/networking/cluster/kubernetes/default.nix index 343380c6075158a8075cfb765b55559c50dabb9a..c3ed2d16df18ed0d32a800af132987f95af8bcc5 100644 --- a/pkgs/applications/networking/cluster/kubernetes/default.nix +++ b/pkgs/applications/networking/cluster/kubernetes/default.nix @@ -15,13 +15,13 @@ with lib; stdenv.mkDerivation rec { name = "kubernetes-${version}"; - version = "1.12.1"; + version = "1.12.2"; src = fetchFromGitHub { owner = "kubernetes"; repo = "kubernetes"; rev = "v${version}"; - sha256 = "1gm0v5p008w9i4k94ddjdyfqfsbx7a6ngmh81p155599hifm32zc"; + sha256 = "14w77yw8pd2y5d764byh31vv9203y38zlvcr1a9wylrs00kgzwfw"; }; buildInputs = [ removeReferencesTo makeWrapper which go_1_10 rsync go-bindata ]; diff --git a/pkgs/applications/networking/cluster/luigi/default.nix b/pkgs/applications/networking/cluster/luigi/default.nix index ced7b9882b9ca4a1ae168ee4cad685213377dca2..35721208a6e2e4d0860d3247329e83b16276814e 100644 --- a/pkgs/applications/networking/cluster/luigi/default.nix +++ b/pkgs/applications/networking/cluster/luigi/default.nix @@ -14,7 +14,7 @@ python3Packages.buildPythonApplication rec { sed -i 's/<2.2.0//' setup.py ''; - propagatedBuildInputs = with python3Packages; [ tornado_4 pythondaemon ]; + propagatedBuildInputs = with python3Packages; [ tornado_4 python-daemon ]; # Requires tox, hadoop, and google cloud doCheck = false; diff --git a/pkgs/applications/networking/cluster/openshift/default.nix b/pkgs/applications/networking/cluster/openshift/default.nix index 0f137a872da64e86739f85e113bcabcee1e07200..a34c728da168a7d0e7f9d4140bf0b2e92eb45956 100644 --- a/pkgs/applications/networking/cluster/openshift/default.nix +++ b/pkgs/applications/networking/cluster/openshift/default.nix @@ -1,4 +1,4 @@ -{ stdenv, lib, fetchFromGitHub, removeReferencesTo, which, go_1_9, go-bindata, makeWrapper, rsync, utillinux +{ stdenv, lib, fetchFromGitHub, removeReferencesTo, which, go, go-bindata, makeWrapper, rsync, utillinux , coreutils, kerberos, clang , components ? [ "cmd/oc" @@ -9,15 +9,15 @@ with lib; let - version = "3.10.0"; + version = "3.11.0"; ver = stdenv.lib.elemAt (stdenv.lib.splitString "." version); versionMajor = ver 0; versionMinor = ver 1; versionPatch = ver 2; - gitCommit = "dd10d17"; + gitCommit = "0cbc58b"; # version is in vendor/k8s.io/kubernetes/pkg/version/base.go - k8sversion = "v1.10.0"; - k8sgitcommit = "b81c8f8"; + k8sversion = "v1.11.1"; + k8sgitcommit = "b1b2997"; k8sgitMajor = "0"; k8sgitMinor = "1"; in stdenv.mkDerivation rec { @@ -28,12 +28,12 @@ in stdenv.mkDerivation rec { owner = "openshift"; repo = "origin"; rev = "v${version}"; - sha256 = "13aglz005jl48z17vnggkvr39l5h6jcqgkfyvkaz4c3jakms1hi9"; + sha256 = "06q4v2a1mm6c659ab0rzkqz6b66vx4avqfg0s9xckwhq420lzgka"; }; # go > 1.10 - # [FATAL] [14:44:02+0000] Please install Go version go1.9 or use PERMISSIVE_GO=y to bypass this check. - buildInputs = [ removeReferencesTo makeWrapper which go_1_9 rsync go-bindata kerberos clang ]; + # [FATAL] [14:44:02+0000] Please install Go version go or use PERMISSIVE_GO=y to bypass this check. + buildInputs = [ removeReferencesTo makeWrapper which go rsync go-bindata kerberos clang ]; outputs = [ "out" ]; @@ -78,7 +78,7 @@ in stdenv.mkDerivation rec { ''; preFixup = '' - find $out/bin -type f -exec remove-references-to -t ${go_1_9} '{}' + + find $out/bin -type f -exec remove-references-to -t ${go} '{}' + ''; meta = with stdenv.lib; { diff --git a/pkgs/applications/networking/cluster/terraform-providers/data.nix b/pkgs/applications/networking/cluster/terraform-providers/data.nix index 261d067eb1d072650a888c765323779ddb2f6ed1..c3be5eade39032cb535656fbb7b011ea8eb003fa 100644 --- a/pkgs/applications/networking/cluster/terraform-providers/data.nix +++ b/pkgs/applications/networking/cluster/terraform-providers/data.nix @@ -11,8 +11,8 @@ { owner = "terraform-providers"; repo = "terraform-provider-alicloud"; - version = "1.17.0"; - sha256 = "1zmywmcgfmx5ccp0qxj912sqymisxdg2s84b4qclfa225hrbaqpn"; + version = "1.22.0"; + sha256 = "19qn7q280ppsg7hjlmyagbhgb7qw365mk6c4avs0apvpq6n64rn3"; }; archive = { @@ -39,15 +39,15 @@ { owner = "terraform-providers"; repo = "terraform-provider-aws"; - version = "1.38.0"; - sha256 = "1jhr2l8p7wf7kgr2y0c40n1jb9p2153xkpcp4b2half2vhsh1nwi"; + version = "1.43.1"; + sha256 = "0fhw07kqcykfzlfhqh3wdz43kkhz3c63xkymnpw68kqx2vxx8ncv"; }; azurerm = { owner = "terraform-providers"; repo = "terraform-provider-azurerm"; - version = "1.15.0"; - sha256 = "1pdmj0ww5y2nwxivlf5l886nwd76hpqhwdayab2fp16zyl1qbpfd"; + version = "1.18.0"; + sha256 = "03vkpk9kl9zvfrprhqqn739klr9gpps5d6zq5r3qa56k588zcg4p"; }; azurestack = { @@ -88,8 +88,8 @@ { owner = "terraform-providers"; repo = "terraform-provider-circonus"; - version = "0.1.1"; - sha256 = "05n1q9hc0h31icxsmyi2y60wiwd5fs2hz1dqm3bl6hgh5x3ss1im"; + version = "0.2.0"; + sha256 = "1vcia3p31cgdwjs06k4244bk7ib2qp1f2lhc7hmyhdfi1c8jym45"; }; clc = { @@ -102,8 +102,8 @@ { owner = "terraform-providers"; repo = "terraform-provider-cloudflare"; - version = "1.5.0"; - sha256 = "0l8bmnxmjr2g3xxw8w0ay91cvs4kzc65wkdwybfahvq9r6mww45n"; + version = "1.8.0"; + sha256 = "1hsqxi27mwr96k8yn8f1nxwvs1jaq7nr8plxi7y4lqsv6s7mghjk"; }; cloudscale = { @@ -130,22 +130,22 @@ { owner = "terraform-providers"; repo = "terraform-provider-consul"; - version = "2.1.0"; - sha256 = "1qm29vj8ms37zb4b3bhdv4b4vrl0am134zmc654lb2g582cnj9yw"; + version = "2.2.0"; + sha256 = "13jwvf7n7238pzvdq9m6vnl9vqa9hkr1mrcf9sa1q9lxkim9ijfk"; }; datadog = { owner = "terraform-providers"; repo = "terraform-provider-datadog"; - version = "1.3.0"; - sha256 = "0d3xccfkzibjp4jl8irja1cdhppdn3b7nh4wy857zvfxpfhz7aj2"; + version = "1.5.0"; + sha256 = "0wr44rqmg0hffgb2g4h03lk4pg9i244c13kyrc3m89b3biwdcydz"; }; digitalocean = { owner = "terraform-providers"; repo = "terraform-provider-digitalocean"; - version = "0.1.3"; - sha256 = "10crxciw7y2gnm8vqp007vw0k7c1a1xk2z2zsjr5rksk6qlnri4k"; + version = "1.0.2"; + sha256 = "0ilkdnadzsidq8hia5wk4jyk6034pmajrpkgwf4ryz7kx41vy2g6"; }; dme = { @@ -172,8 +172,8 @@ { owner = "terraform-providers"; repo = "terraform-provider-docker"; - version = "1.0.1"; - sha256 = "1q5bsdvp47gvpiyqlzgrpxczlh6m9g870pn84ks49xfkwk5izpz6"; + version = "1.1.0"; + sha256 = "1ba9z9fd69hpg6kg30nf95zzskzipi74s1aadywc068gfrkdm9jj"; }; dyn = { @@ -193,15 +193,15 @@ { owner = "terraform-providers"; repo = "terraform-provider-fastly"; - version = "0.3.0"; - sha256 = "1hh4s81g256iy1rvp9snqbyhidz8n6p7pzanlxp89ffrq9p32sp0"; + version = "0.4.0"; + sha256 = "1fkn9b6ibs36cmhknb3x05g31rf73w70xwx05rh9fhybrz5dd9z9"; }; flexibleengine = { owner = "terraform-providers"; repo = "terraform-provider-flexibleengine"; - version = "1.1.0"; - sha256 = "07g6kc211crxf9nvgvghg05jdahd1fb09lpwfcps9ph259pwwam3"; + version = "1.2.1"; + sha256 = "000v6fmmnwfibzfssk23s9qwrb8a9l0j1qd14x2dqsc7ql0kbnz8"; }; github = { @@ -221,8 +221,8 @@ { owner = "terraform-providers"; repo = "terraform-provider-google"; - version = "1.18.0"; - sha256 = "0zwy1imby0xqvb86a82rdvglipf2sfpi3rmsj72iikp7vi3mqk64"; + version = "1.19.1"; + sha256 = "1n2a1y9103xkndmvr5cvj7i1m8s9lv61vgijgk3m2f73pb4znak0"; }; grafana = { @@ -235,15 +235,22 @@ { owner = "terraform-providers"; repo = "terraform-provider-hcloud"; - version = "1.3.0"; - sha256 = "0sb9pajsy0if18vgw5pllgv8qvb4v7pv65m2f3hfkck2za82ndwb"; + version = "1.4.0"; + sha256 = "00mq6p2y61z4hg9dncf3mj59cp6fx4iqrn86m96wkw346shs6prs"; + }; + helm = + { + owner = "terraform-providers"; + repo = "terraform-provider-helm"; + version = "0.6.2"; + sha256 = "11j4lpzbrdszgkjf1gjyibh9c5w0fly01qdkrflv98ry5csx9q5b"; }; heroku = { owner = "terraform-providers"; repo = "terraform-provider-heroku"; - version = "1.4.0"; - sha256 = "159a9add5v4dj2bry1b85i74q2lb4pjjypkm5hzrbqys6gn2imhn"; + version = "1.5.0"; + sha256 = "0hzzhqd87vkcbzndsn15g4nl3qhv2kvnhs9zv6kbxaxm7p7rm3pz"; }; http = { @@ -284,8 +291,8 @@ { owner = "terraform-providers"; repo = "terraform-provider-kubernetes"; - version = "1.2.0"; - sha256 = "0slvhj8f7p27r9v4vb5vjyqpmzlpaji1djzwsxsf247df68mka61"; + version = "1.3.0"; + sha256 = "0fhh0r92whcxqz4z2kb6qx9dyygms5mz7ifhb9c7s2r22jnfz1j3"; }; librato = { @@ -294,6 +301,13 @@ version = "0.1.0"; sha256 = "0bxadwj5s7bvc4vlymn3w6qckf14hz82r7q98w2nh55sqr52d923"; }; + linode = + { + owner = "terraform-providers"; + repo = "terraform-provider-linode"; + version = "1.2.0"; + sha256 = "1wnl48qi8lhrxnrdgnhw7cb7mqv6141g4i648wb7cni5vlqy3i5l"; + }; local = { owner = "terraform-providers"; @@ -326,8 +340,8 @@ { owner = "terraform-providers"; repo = "terraform-provider-mysql"; - version = "1.1.0"; - sha256 = "06alk5vd20wzf493dw8hb80q0sx0kw4j8g1sd0193fhni0k4rflw"; + version = "1.5.0"; + sha256 = "1fsqfqz1db1pv8agr5zgqqyhizd7647n6rznf24iwapy1q0wkvmi"; }; netlify = { @@ -340,8 +354,8 @@ { owner = "terraform-providers"; repo = "terraform-provider-newrelic"; - version = "1.0.1"; - sha256 = "0g4fd2rvx90f2bmjl6jjdvrsx7ayhf30vj9y3mklhxgsd9x83wpq"; + version = "1.2.0"; + sha256 = "1dh2i7qps7nr876y54jrjb414vdjhd8c7m1zwdiny93ggvl8f5j2"; }; nomad = { @@ -371,12 +385,19 @@ version = "1.0.0"; sha256 = "12vpa09xrq8z1pjq0bwzq3889c4fl6c5kvynwqy0z1pdx21m60ha"; }; + nutanix = + { + owner = "terraform-providers"; + repo = "terraform-provider-nutanix"; + version = "1.0.0"; + sha256 = "16nky5ryyjvv7vny18ymxvy20ivwmqw7lagnz48pq8mnwwrp5541"; + }; oci = { owner = "terraform-providers"; repo = "terraform-provider-oci"; - version = "3.1.1"; - sha256 = "0wrvb44gs0c1khvam5lrq53l2889japg7d4nyk2hrpywy9japc8m"; + version = "3.6.0"; + sha256 = "0ilg52j6js6bvw9wng5rbcv2n9kp926x4f2q340qwyyna59r5s5l"; }; oneandone = { @@ -389,22 +410,22 @@ { owner = "terraform-providers"; repo = "terraform-provider-opc"; - version = "1.2.1"; - sha256 = "0mnvi47kbdwwpfzdlcd1mhd15w5b0ivwxi1a5lvs0zyqf0g0cas8"; + version = "1.3.0"; + sha256 = "1ksqjfp6gxgrpc9gcs9jv3wj5058z93h7prv4mhvc2bilal4gc0p"; }; openstack = { owner = "terraform-providers"; repo = "terraform-provider-openstack"; - version = "1.9.0"; - sha256 = "0prmdj78jsyrns876cglfp8a3dbpfl33bwb0dj072flh4yknfrdr"; + version = "1.11.0"; + sha256 = "1wqb7q10nyr4jy9ny4giazblwhh3qrn4s1f0xb5q702b5igbfwwm"; }; opentelekomcloud = { owner = "terraform-providers"; repo = "terraform-provider-opentelekomcloud"; - version = "1.1.0"; - sha256 = "04pcgygcz2ld5hp7f29j2z3d4ypy4fm4m1zbbs9l9gc3fya88iny"; + version = "1.3.0"; + sha256 = "07rmav271wgjp1sby88s2ghh8w5hnkdy6rsc8pj69zy332i7n6wk"; }; opsgenie = { @@ -431,8 +452,8 @@ { owner = "terraform-providers"; repo = "terraform-provider-packet"; - version = "1.2.4"; - sha256 = "11ga29d5bzmn6rzlb6sb28nh1zbbwglinzn185pysqx6n21l6wva"; + version = "1.2.5"; + sha256 = "1c40w1q18piip4fn572mnf67g07h6g03hnin23c7jw265m4yr222"; }; pagerduty = { @@ -445,8 +466,8 @@ { owner = "terraform-providers"; repo = "terraform-provider-panos"; - version = "1.4.0"; - sha256 = "033xpglbn0q805b129kf1ywl13m4pgrkwlvgl347nldysryiasxq"; + version = "1.4.1"; + sha256 = "1mlz01v01675cf9ja8i42c6ssklf65kd8wpjzf0j472lfwki4xpp"; }; postgresql = { @@ -508,15 +529,15 @@ { owner = "terraform-providers"; repo = "terraform-provider-runscope"; - version = "0.4.0"; - sha256 = "1n3q2hdwvkkn5rphrcl5qfv4ry2mrr13dcjwzhbym2i1nhpxkld0"; + version = "0.5.0"; + sha256 = "0n0m39gaiwhqigjny51a7g36ldik33alimkqqbv6hqyzrhk0qs8h"; }; scaleway = { owner = "terraform-providers"; repo = "terraform-provider-scaleway"; - version = "1.6.0"; - sha256 = "1ykcakfw0gp239jp4brpjynxzzvlhldfpv12hkgymj22s37n5jnn"; + version = "1.7.0"; + sha256 = "0gsjvpwfw2sc6ncy8v3j6gs0aanq3b08j3gid43687mfd782f4gk"; }; softlayer = { @@ -553,6 +574,13 @@ version = "1.0.0"; sha256 = "0jl6bp6gwg96sdk5j6s13vv1j9gxjpy2yva3barmzv9138i665mz"; }; + tencentcloud = + { + owner = "terraform-providers"; + repo = "terraform-provider-tencentcloud"; + version = "1.2.2"; + sha256 = "1ypsfm48c30szg3zc1sknblhwcnca8aapfgp62bhszyqxq6zq37s"; + }; terraform = { owner = "terraform-providers"; @@ -592,8 +620,8 @@ { owner = "terraform-providers"; repo = "terraform-provider-vault"; - version = "1.1.4"; - sha256 = "00i9rl9pnmicvndkmvcmlj6y80341dmkqnhq09f94yljh1w1zpvv"; + version = "1.3.1"; + sha256 = "1rhwq45g6jggmxf953w5lckqzngdr15g5ncwwl2mjhz2xakn44lh"; }; vcd = { @@ -606,8 +634,8 @@ { owner = "terraform-providers"; repo = "terraform-provider-vsphere"; - version = "1.8.1"; - sha256 = "0y6n7mvv1f3jqsxlvf68iq85k69fj7a333203vkvc83dba84aqki"; + version = "1.9.0"; + sha256 = "1by9klwvdw3m854jffimfnsz1lnbaixi4zcv4zzs63dc3flwy2b2"; }; matchbox = { diff --git a/pkgs/applications/networking/cluster/terraform/default.nix b/pkgs/applications/networking/cluster/terraform/default.nix index a4ffe27102a69a47c99b21e781b01ddbf8f3ff70..583b6a06aeabd31c1963d79c6bf074d03ef4fcb0 100644 --- a/pkgs/applications/networking/cluster/terraform/default.nix +++ b/pkgs/applications/networking/cluster/terraform/default.nix @@ -113,8 +113,8 @@ in rec { terraform_0_10-full = terraform_0_10.withPlugins lib.attrValues; terraform_0_11 = pluggable (generic { - version = "0.11.8"; - sha256 = "1kdmx21l32vj5kvkimkx0s5mxgmgkdwlgbin4f3iqjflzip0cddh"; + version = "0.11.10"; + sha256 = "08mapla89g106bvqr41zfd7l4ki55by6207qlxq9caiha54nx4nb"; patches = [ ./provider-path.patch ]; passthru = { inherit plugins; }; }); diff --git a/pkgs/applications/networking/cluster/terragrunt/default.nix b/pkgs/applications/networking/cluster/terragrunt/default.nix index f35269eb27129b203054fe1fccf662636dea4331..1fe9ad5ccc831acff728a4c7322a6e2883c5b620 100644 --- a/pkgs/applications/networking/cluster/terragrunt/default.nix +++ b/pkgs/applications/networking/cluster/terragrunt/default.nix @@ -2,7 +2,7 @@ buildGoPackage rec { name = "terragrunt-${version}"; - version = "0.16.6"; + version = "0.17.2"; goPackagePath = "github.com/gruntwork-io/terragrunt"; @@ -10,7 +10,7 @@ buildGoPackage rec { owner = "gruntwork-io"; repo = "terragrunt"; rev = "v${version}"; - sha256 = "0fzn2ymk8x0lzwfqlvnry8s6wf3q0sqn76lfardjyz6wgxl8011i"; + sha256 = "069l9ynyl96rfs9zw6w6n1yzjjin27731nj1ajr9jsyc8rhd84wv"; }; goDeps = ./deps.nix; diff --git a/pkgs/applications/networking/feedreaders/canto-curses/default.nix b/pkgs/applications/networking/feedreaders/canto-curses/default.nix index 0190d5f9798f2dce96fecab4fccc322f7789d5cf..36b4732ca2e7ce8af4d64e7eb8f76ab7ac66adc1 100644 --- a/pkgs/applications/networking/feedreaders/canto-curses/default.nix +++ b/pkgs/applications/networking/feedreaders/canto-curses/default.nix @@ -1,8 +1,8 @@ -{ stdenv, fetchFromGitHub, python34Packages, readline, ncurses, canto-daemon }: +{ stdenv, fetchFromGitHub, python3Packages, readline, ncurses, canto-daemon }: -python34Packages.buildPythonApplication rec { +python3Packages.buildPythonApplication rec { version = "0.9.9"; - name = "canto-curses-${version}"; + pname = "canto-curses"; src = fetchFromGitHub { owner = "themoken"; diff --git a/pkgs/applications/networking/feedreaders/canto-daemon/default.nix b/pkgs/applications/networking/feedreaders/canto-daemon/default.nix index 4b1721278e3d70a99a04198db0c2953aa3185150..e700c5634ad652d88e765a4c325ae5cbd8345860 100644 --- a/pkgs/applications/networking/feedreaders/canto-daemon/default.nix +++ b/pkgs/applications/networking/feedreaders/canto-daemon/default.nix @@ -1,9 +1,8 @@ -{ stdenv, fetchFromGitHub, python34Packages, }: +{ stdenv, fetchFromGitHub, python3Packages, }: -python34Packages.buildPythonApplication rec { +python3Packages.buildPythonApplication rec { version = "0.9.7"; - name = "canto-daemon-${version}"; - namePrefix = ""; + pname = "canto-daemon"; src = fetchFromGitHub { owner = "themoken"; @@ -12,7 +11,7 @@ python34Packages.buildPythonApplication rec { sha256 = "1si53r8cd4avfc56r315zyrghkppnjd6n125z1agfv59i7hdmk3n"; }; - propagatedBuildInputs = with python34Packages; [ feedparser ]; + propagatedBuildInputs = with python3Packages; [ feedparser ]; meta = { description = "Daemon for the canto Atom/RSS feed reader"; diff --git a/pkgs/applications/networking/instant-messengers/psi-plus/default.nix b/pkgs/applications/networking/instant-messengers/psi-plus/default.nix index 64e3c822108f6b56b16b217901cd886dc9e0a426..d01019a5619706ac82a2538a7b996466e495fd99 100644 --- a/pkgs/applications/networking/instant-messengers/psi-plus/default.nix +++ b/pkgs/applications/networking/instant-messengers/psi-plus/default.nix @@ -5,20 +5,20 @@ stdenv.mkDerivation rec { name = "psi-plus-${version}"; - version = "1.3.422"; + version = "1.4.404"; src = fetchFromGitHub { owner = "psi-plus"; repo = "psi-plus-snapshots"; rev = "${version}"; - sha256 = "193n3yvhp9m14irb49kg2rc4h7ypdmvidrgvv1i2n373iq751z05"; + sha256 = "05dcr1i7ic6nff70w4zfpdcmwf19kkhgxm7mcznmlr484d5i1v2m"; }; resources = fetchFromGitHub { owner = "psi-plus"; repo = "resources"; - rev = "c0bfb8a025eeec82cd0a23a559e0aa3da15c3ec3"; - sha256 = "1q7v01w085vk7ml6gwis7j409w6f5cplpm7c0ajs4i93c4j53xdf"; + rev = "d623f57db35eb5af81ccdf69b2cbe1c437190f29"; + sha256 = "024cyazyxka5vcbjrkkw32c5zw6aa70n50fdp6zh5v5c51d9ci8k"; }; postUnpack = '' diff --git a/pkgs/applications/networking/instant-messengers/rambox/default.nix b/pkgs/applications/networking/instant-messengers/rambox/default.nix index 7c630e522afea7a665df1c636a0ca3103e8b08c5..46157c2a35f3c93d38d912f8efa560aca89a54ff 100644 --- a/pkgs/applications/networking/instant-messengers/rambox/default.nix +++ b/pkgs/applications/networking/instant-messengers/rambox/default.nix @@ -1,4 +1,6 @@ -{ stdenv, newScope, makeWrapper, electron, xdg_utils, makeDesktopItem +{ stdenv, newScope, makeWrapper +, wrapGAppsHook, gnome3, glib +, electron, xdg_utils, makeDesktopItem , auth0ClientID ? "0spuNKfIGeLAQ_Iki9t3fGxbfJl3k8SU" , auth0Domain ? "nixpkgs.auth0.com" }: @@ -26,16 +28,25 @@ with self; stdenv.mkDerivation { name = "rambox-${rambox-bare.version}"; - nativeBuildInputs = [ makeWrapper ]; + nativeBuildInputs = [ makeWrapper wrapGAppsHook ]; + buildInputs = [ glib gnome3.gsettings_desktop_schemas ]; unpackPhase = ":"; + dontWrapGApps = true; # we only want $gappsWrapperArgs here + installPhase = '' + runHook preInstall + mkdir -p $out/share/applications + ln -s ${desktopItem}/share/applications/* $out/share/applications + runHook postInstall + ''; + + postFixup = '' makeWrapper ${electron}/bin/electron $out/bin/rambox \ --add-flags "${rambox-bare} --without-update" \ + "''${gappsWrapperArgs[@]}" \ --prefix PATH : ${xdg_utils}/bin - mkdir -p $out/share/applications - ln -s ${desktopItem}/share/applications/* $out/share/applications ''; inherit (rambox-bare.meta // { diff --git a/pkgs/applications/networking/instant-messengers/rambox/sencha/bare.nix b/pkgs/applications/networking/instant-messengers/rambox/sencha/bare.nix index af92462a2a4911329ab89321e188dac1092e1336..efecebe169e9f16e0e76c6da832273ecda7ec426 100644 --- a/pkgs/applications/networking/instant-messengers/rambox/sencha/bare.nix +++ b/pkgs/applications/networking/instant-messengers/rambox/sencha/bare.nix @@ -1,15 +1,15 @@ { stdenv, fetchurl, gzip, which, unzip, jdk }: let - version = "6.5.3.6"; + version = "6.6.0.13"; srcs = { i686-linux = fetchurl { url = "https://cdn.sencha.com/cmd/${version}/no-jre/SenchaCmd-${version}-linux-i386.sh.zip"; - sha256 = "0g3hk3fdgmkdsr6ck1fgsmaxa9wbj2fpk84rk382ff9ny55bbzv9"; + sha256 = "15b197108b49mf0afpihkh3p68lxm7580zz2w0xsbahglnvhwyfz"; }; x86_64-linux = fetchurl { url = "https://cdn.sencha.com/cmd/${version}/no-jre/SenchaCmd-${version}-linux-amd64.sh.zip"; - sha256 = "08j8gak1xsxdjgkv6s24jv97jc49pi5yf906ynjmxb27wqpxn9mz"; + sha256 = "1cxhckmx1802p9qiw09cgb1v5f30wcvnrwkshmia8p8n0q47lpp4"; }; }; in diff --git a/pkgs/applications/networking/instant-messengers/signal-desktop/default.nix b/pkgs/applications/networking/instant-messengers/signal-desktop/default.nix index f123770197fdd85af1bfd21f320b4d7e71890197..ca6ee04d370bda58a02014f7fdb7093ba20fa33f 100644 --- a/pkgs/applications/networking/instant-messengers/signal-desktop/default.nix +++ b/pkgs/applications/networking/instant-messengers/signal-desktop/default.nix @@ -56,11 +56,11 @@ let in stdenv.mkDerivation rec { name = "signal-desktop-${version}"; - version = "1.17.1"; + version = "1.17.3"; src = fetchurl { url = "https://updates.signal.org/desktop/apt/pool/main/s/signal-desktop/signal-desktop_${version}_amd64.deb"; - sha256 = "1cvgjllnbdsr61pz6r4dkbbz58cf69k7p8wriyp1vpzkdi7k5bpl"; + sha256 = "1k0gj24562jfj748s7qcn1f7brr1c0zn2dppxvfv2ka2r2n0z1h4"; }; phases = [ "unpackPhase" "installPhase" ]; diff --git a/pkgs/applications/networking/instant-messengers/slack-term/default.nix b/pkgs/applications/networking/instant-messengers/slack-term/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..79464f54232c3433c67b30c4995543dc9852fc01 --- /dev/null +++ b/pkgs/applications/networking/instant-messengers/slack-term/default.nix @@ -0,0 +1,23 @@ +{ stdenv, buildGoPackage, fetchFromGitHub }: + +buildGoPackage rec { + # https://github.com/erroneousboat/slack-term + name = "slack-term-${version}"; + version = "0.4.1"; + + goPackagePath = "github.com/erroneousboat/slack-term"; + + src = fetchFromGitHub { + owner = "erroneousboat"; + repo = "slack-term"; + rev = "v${version}"; + sha256 = "1340bq7h31fxykxbxpn6hv7n2hmjf20f8vg5gan9pjf5jaa6kfza"; + }; + + meta = with stdenv.lib; { + description = "Slack client for your terminal"; + homepage = https://github.com/erroneousboat/slack-term; + license = licenses.mit; + maintainers = with maintainers; [ dtzWill ]; + }; +} diff --git a/pkgs/applications/networking/instant-messengers/slack/default.nix b/pkgs/applications/networking/instant-messengers/slack/default.nix index af2030a20b8a157f61b915a8fe1343c821e191e6..529a530a4a361a249bb17de6ffed30d4d05fef0d 100644 --- a/pkgs/applications/networking/instant-messengers/slack/default.nix +++ b/pkgs/applications/networking/instant-messengers/slack/default.nix @@ -5,7 +5,7 @@ let - version = "3.2.1"; + version = "3.3.3"; rpath = stdenv.lib.makeLibraryPath [ alsaLib @@ -47,7 +47,7 @@ let if stdenv.hostPlatform.system == "x86_64-linux" then fetchurl { url = "https://downloads.slack-edge.com/linux_releases/slack-desktop-${version}-amd64.deb"; - sha256 = "095dpkwvvnwlxsglyg6wi9126wpalzi736b6g6j3bd6d93z9afah"; + sha256 = "01x4anbm62y49zfkyfvxih5rk8g2qi32ppb8j2a5pwssyw4wqbfi"; } else throw "Slack is not supported on ${stdenv.hostPlatform.system}"; diff --git a/pkgs/applications/networking/instant-messengers/teamspeak/server.nix b/pkgs/applications/networking/instant-messengers/teamspeak/server.nix index e3566c50962b1e354afba5fdecf29294300a6689..41e7db569c42a063fa592853e0530c9130a94aff 100644 --- a/pkgs/applications/networking/instant-messengers/teamspeak/server.nix +++ b/pkgs/applications/networking/instant-messengers/teamspeak/server.nix @@ -1,7 +1,7 @@ { stdenv, fetchurl, makeWrapper }: let - version = "3.4.0"; + version = "3.5.0"; arch = if stdenv.is64bit then "amd64" else "x86"; libDir = if stdenv.is64bit then "lib64" else "lib"; in @@ -15,8 +15,8 @@ stdenv.mkDerivation { "http://teamspeak.gameserver.gamed.de/ts3/releases/${version}/teamspeak3-server_linux_${arch}-${version}.tar.bz2" ]; sha256 = if stdenv.is64bit - then "12wis5sbbx502g86irhi3g2gvpczbxzjw7z0lw9rk7jagplwhvkx" - else "01ajiqizy4f8niqipxccimvvsqlfypr4a28rwxk6zran7m1kjpp6"; + then "0zk7rbi6mvs2nnsjhv4aizl5ydiyr46ng2i3lr8r78gyb88nxmcv" + else "0nahsmcnykgchgv50jb22fin74sab1zl8gy6m6s8mjk570qlvzzm"; }; buildInputs = [ makeWrapper ]; diff --git a/pkgs/applications/networking/instant-messengers/telegram/tdesktop/default.nix b/pkgs/applications/networking/instant-messengers/telegram/tdesktop/default.nix index 1e8080fd9c9d627c955e16fd5fc55937c6cdde6f..b5994d03bc68edd67dd6626066f30e3ef453899d 100644 --- a/pkgs/applications/networking/instant-messengers/telegram/tdesktop/default.nix +++ b/pkgs/applications/networking/instant-messengers/telegram/tdesktop/default.nix @@ -13,8 +13,8 @@ let in { stable = mkTelegram stableVersion; preview = mkTelegram (stableVersion // { - version = "1.4.4"; - sha256Hash = "1m1j485r3vzpglzfn8l4cqskysvkx8l3pqaw3fgp66jfajbxynf0"; + version = "1.4.7"; + sha256Hash = "00kjirikywdbigm4zdnm50s3wxfn9bw1yx13xz4k4ppz6amq9nrp"; stable = false; }); } diff --git a/pkgs/applications/networking/instant-messengers/telegram/tdesktop/generic.nix b/pkgs/applications/networking/instant-messengers/telegram/tdesktop/generic.nix index e8f2c135fa8a8d8d7297c38f99101545c67d528b..63c3f9e07252bdbe8688e20071c31ce7becfa07b 100644 --- a/pkgs/applications/networking/instant-messengers/telegram/tdesktop/generic.nix +++ b/pkgs/applications/networking/instant-messengers/telegram/tdesktop/generic.nix @@ -97,7 +97,9 @@ mkDerivation rec { sed -i Telegram/ThirdParty/libtgvoip/libtgvoip.gyp \ -e "/-msse2/d" - gyp \ + gyp ${lib.optionalString (!stable) '' + -Dapi_id=17349 \ + -Dapi_hash=344583e45741c457fe1862106095a5eb ''}\ -Dbuild_defines=${GYP_DEFINES} \ -Gconfig=Release \ --depth=Telegram/gyp \ diff --git a/pkgs/applications/networking/instant-messengers/toxic/default.nix b/pkgs/applications/networking/instant-messengers/toxic/default.nix index 646b41cfe75a3f91580c8d1c34f380e426b08cdc..cbf2dd7d99a28b665f42b6fd889ba9b0e6e541d8 100644 --- a/pkgs/applications/networking/instant-messengers/toxic/default.nix +++ b/pkgs/applications/networking/instant-messengers/toxic/default.nix @@ -4,13 +4,13 @@ stdenv.mkDerivation rec { name = "toxic-${version}"; - version = "0.8.2"; + version = "0.8.3"; src = fetchFromGitHub { owner = "Tox"; repo = "toxic"; rev = "v${version}"; - sha256 = "0fwmk945nip98m3md58y3ibjmzfq25hns3xf0bmbc6fjpww8d5p5"; + sha256 = "09l2j3lwvrq7bf3051vjsnml9w63790ly3iylgf26gkrmld6k31w"; }; makeFlags = [ "PREFIX=$(out)"]; diff --git a/pkgs/applications/networking/instant-messengers/wire-desktop/default.nix b/pkgs/applications/networking/instant-messengers/wire-desktop/default.nix index 193e306f2286e2fb24789529550f7ebd63e31fe1..c685a5b91c1ee25e03e84a93274d4df360c0767b 100644 --- a/pkgs/applications/networking/instant-messengers/wire-desktop/default.nix +++ b/pkgs/applications/networking/instant-messengers/wire-desktop/default.nix @@ -72,7 +72,10 @@ in categories = "Network;InstantMessaging;Chat;VideoConference"; }; - phases = [ "unpackPhase" "installPhase" ]; + dontBuild = true; + dontPatchELF = true; + dontConfigure = true; + nativeBuildInputs = [ dpkg ]; unpackPhase = "dpkg-deb -x $src ."; installPhase = '' @@ -93,7 +96,7 @@ in # Desktop file mkdir -p "$out/share/applications" - cp ${desktopItem}/share/applications/* "$out/share/applications" + cp "${desktopItem}/share/applications/"* "$out/share/applications" ''; meta = with stdenv.lib; { diff --git a/pkgs/applications/networking/irc/weechat/aggregate-commands.patch b/pkgs/applications/networking/irc/weechat/aggregate-commands.patch deleted file mode 100644 index 41e3c54a2d57e41ec03fc5b26f2162b7da9f2dc5..0000000000000000000000000000000000000000 --- a/pkgs/applications/networking/irc/weechat/aggregate-commands.patch +++ /dev/null @@ -1,110 +0,0 @@ -diff --git a/src/core/wee-command.c b/src/core/wee-command.c -index 91c3c068d..8105e4171 100644 ---- a/src/core/wee-command.c -+++ b/src/core/wee-command.c -@@ -8345,10 +8345,20 @@ command_exec_list (const char *command_list) - void - command_startup (int plugins_loaded) - { -+ int i; -+ - if (plugins_loaded) - { - command_exec_list (CONFIG_STRING(config_startup_command_after_plugins)); -- command_exec_list (weechat_startup_commands); -+ if (weechat_startup_commands) -+ { -+ for (i = 0; i < weelist_size (weechat_startup_commands); i++) -+ { -+ command_exec_list ( -+ weelist_string ( -+ weelist_get (weechat_startup_commands, i))); -+ } -+ } - } - else - command_exec_list (CONFIG_STRING(config_startup_command_before_plugins)); -diff --git a/src/core/weechat.c b/src/core/weechat.c -index f74598ad5..ff2e539d1 100644 ---- a/src/core/weechat.c -+++ b/src/core/weechat.c -@@ -60,6 +60,7 @@ - #include "wee-eval.h" - #include "wee-hdata.h" - #include "wee-hook.h" -+#include "wee-list.h" - #include "wee-log.h" - #include "wee-network.h" - #include "wee-proxy.h" -@@ -102,7 +103,8 @@ int weechat_no_gnutls = 0; /* remove init/deinit of gnutls */ - /* (useful with valgrind/electric-f.)*/ - int weechat_no_gcrypt = 0; /* remove init/deinit of gcrypt */ - /* (useful with valgrind) */ --char *weechat_startup_commands = NULL; /* startup commands (-r flag) */ -+struct t_weelist *weechat_startup_commands = NULL; /* startup commands */ -+ /* (option -r) */ - - - /* -@@ -152,9 +154,13 @@ weechat_display_usage () - " -h, --help display this help\n" - " -l, --license display WeeChat license\n" - " -p, --no-plugin don't load any plugin at startup\n" -- " -r, --run-command run command(s) after startup\n" -- " (many commands can be separated by " -- "semicolons)\n" -+ " -P, --plugins load only these plugins at startup\n" -+ " (see /help weechat.plugin.autoload)\n" -+ " -r, --run-command run command(s) after startup;\n" -+ " many commands can be separated by " -+ "semicolons,\n" -+ " this option can be given multiple " -+ "times\n" - " -s, --no-script don't load any script at startup\n" - " --upgrade upgrade WeeChat using session files " - "(see /help upgrade in WeeChat)\n" -@@ -276,9 +282,10 @@ weechat_parse_args (int argc, char *argv[]) - { - if (i + 1 < argc) - { -- if (weechat_startup_commands) -- free (weechat_startup_commands); -- weechat_startup_commands = strdup (argv[++i]); -+ if (!weechat_startup_commands) -+ weechat_startup_commands = weelist_new (); -+ weelist_add (weechat_startup_commands, argv[++i], -+ WEECHAT_LIST_POS_END, NULL); - } - else - { -@@ -616,6 +623,8 @@ weechat_shutdown (int return_code, int crash) - free (weechat_home); - if (weechat_local_charset) - free (weechat_local_charset); -+ if (weechat_startup_commands) -+ weelist_free (weechat_startup_commands); - - if (crash) - abort (); -diff --git a/src/core/weechat.h b/src/core/weechat.h -index 9420ff415..cbb565a03 100644 ---- a/src/core/weechat.h -+++ b/src/core/weechat.h -@@ -96,6 +96,8 @@ - /* name of environment variable with an extra lib dir */ - #define WEECHAT_EXTRA_LIBDIR "WEECHAT_EXTRA_LIBDIR" - -+struct t_weelist; -+ - /* global variables and functions */ - extern int weechat_headless; - extern int weechat_debug_core; -@@ -112,7 +114,7 @@ extern char *weechat_local_charset; - extern int weechat_plugin_no_dlclose; - extern int weechat_no_gnutls; - extern int weechat_no_gcrypt; --extern char *weechat_startup_commands; -+extern struct t_weelist *weechat_startup_commands; - - extern void weechat_term_check (); - extern void weechat_shutdown (int return_code, int crash); diff --git a/pkgs/applications/networking/mailreaders/notmuch/default.nix b/pkgs/applications/networking/mailreaders/notmuch/default.nix index c2c5d18e2f0d20cc7b69a80a95920d3e909c7a72..69de3ef5d51c0696c6400aa1d3acab0f8e34d7a3 100644 --- a/pkgs/applications/networking/mailreaders/notmuch/default.nix +++ b/pkgs/applications/networking/mailreaders/notmuch/default.nix @@ -1,4 +1,4 @@ -{ fetchurl, stdenv, fixDarwinDylibNames +{ fetchurl, stdenv , pkgconfig, gnupg , xapian, gmime, talloc, zlib , doxygen, perl @@ -34,18 +34,11 @@ stdenv.mkDerivation rec { bash-completion # (optional) dependency to install bash completion emacs # (optional) to byte compile emacs code, also needed for tests ruby # (optional) ruby bindings - which dtach openssl bash # test dependencies - ] - ++ optional stdenv.isDarwin fixDarwinDylibNames - ++ optionals (!stdenv.isDarwin) [ gdb man ]; # test dependencies + ]; postPatch = '' patchShebangs configure - - find test/ -type f -exec \ - sed -i \ - -e "1s|#!/usr/bin/env bash|#!${bash}/bin/bash|" \ - "{}" ";" + patchShebangs test/ for src in \ util/crypto.c \ @@ -54,6 +47,9 @@ stdenv.mkDerivation rec { substituteInPlace "$src" \ --replace \"gpg\" \"${gnupg}/bin/gpg\" done + + substituteInPlace lib/Makefile.local \ + --replace '-install_name $(libdir)' "-install_name $out/lib" ''; configureFlags = [ "--zshcompletiondir=$(out)/share/zsh/site-functions" ]; @@ -64,33 +60,6 @@ stdenv.mkDerivation rec { enableParallelBuilding = true; makeFlags = "V=1"; - preFixup = optionalString stdenv.isDarwin '' - set -e - - die() { - >&2 echo "$@" - exit 1 - } - - prg="$out/bin/notmuch" - lib="$(find "$out/lib" -name 'libnotmuch.?.dylib')" - - [[ -s "$prg" ]] || die "couldn't find notmuch binary" - [[ -s "$lib" ]] || die "couldn't find libnotmuch" - - badname="$(otool -L "$prg" | awk '$1 ~ /libtalloc/ { print $1 }')" - goodname="$(find "${talloc}/lib" -name 'libtalloc.*.*.*.dylib')" - - [[ -n "$badname" ]] || die "couldn't find libtalloc reference in binary" - [[ -n "$goodname" ]] || die "couldn't find libtalloc in nix store" - - echo "fixing libtalloc link in $lib" - install_name_tool -change "$badname" "$goodname" "$lib" - - echo "fixing libtalloc link in $prg" - install_name_tool -change "$badname" "$goodname" "$prg" - ''; - preCheck = let test-database = fetchurl { url = "https://notmuchmail.org/releases/test-databases/database-v1.tar.xz"; @@ -99,12 +68,14 @@ stdenv.mkDerivation rec { in '' ln -s ${test-database} test/test-databases/database-v1.tar.xz ''; - doCheck = !stdenv.isDarwin && (versionAtLeast gmime.version "3.0"); - checkTarget = "test V=1"; - - postInstall = '' - make install-man - ''; + doCheck = !stdenv.hostPlatform.isDarwin && (versionAtLeast gmime.version "3.0"); + checkTarget = "test"; + checkInputs = [ + which dtach openssl bash + gdb man + ]; + + installTargets = "install install-man"; dontGzipMan = true; # already compressed diff --git a/pkgs/applications/networking/mailreaders/thunderbird-bin/release_sources.nix b/pkgs/applications/networking/mailreaders/thunderbird-bin/release_sources.nix index a97dfce27448923a67710860a80b614220c36ba1..576fbcc7b8a0f71af1ec67b9a37ff3473d692b0e 100644 --- a/pkgs/applications/networking/mailreaders/thunderbird-bin/release_sources.nix +++ b/pkgs/applications/networking/mailreaders/thunderbird-bin/release_sources.nix @@ -1,585 +1,585 @@ { - version = "60.2.1"; 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+ sha512 = "e7fd6217ecb683dd78ababecb4dc17e7705a04c6761f445b34fffdb32527818f5b71361a8613ef54250956462f305faa59267698c89c6ea64eae2c5bb80c1dc2"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.2.1/linux-i686/ru/thunderbird-60.2.1.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.3.0/linux-i686/ru/thunderbird-60.3.0.tar.bz2"; locale = "ru"; arch = "linux-i686"; - sha512 = "e28699b8884f7859323870987fe425af0a8408152a3d373007b634aea1868ab1de483830c07da7efa1fd49c96b5be6c52f5bef91c21c8de0533216be57644fc6"; + sha512 = "051593bb3f0d0ce571aba9365455d97d392377b482db7fa0efa42a50ae52981c294e84f185abd0dd52a07fcbae852d55f0427ede0f5172632a8dac416ed528a1"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.2.1/linux-i686/si/thunderbird-60.2.1.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.3.0/linux-i686/si/thunderbird-60.3.0.tar.bz2"; locale = "si"; arch = "linux-i686"; - sha512 = "e8ea29c2b77398611b79cebd674983f9458d07b4866597fa2bc35ce6d78bf81daebe4311e93604e4e5a391e632eaa9f6601eb75d022ef1b2dfc225b9cc61b0c9"; + sha512 = "0e859053b989734e1134c365a28a5fdb628fd61125cd6c4d3b7cf598e861dc8b08330ec017c148eda8fd02df49a7688d6b5d7e057ab75b387362dca884c9a90d"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.2.1/linux-i686/sk/thunderbird-60.2.1.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.3.0/linux-i686/sk/thunderbird-60.3.0.tar.bz2"; locale = "sk"; arch = "linux-i686"; - sha512 = "587f54eb86b0d0069433e14dce5f24e07ebc355f35f22eaba3ee0982e257782fe4ce5799ee0f7c733fa5a571935d2404ff950acf25b9be61dced6250d76611bd"; + sha512 = "f7d8191bd1f8b78a1a04d669b5193d1067413f3d1f5600940129cf018e38aae85b2c7d274308ca56b2b871d3ec594703d5dde2d5ae12dafee0332ce37393142f"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.2.1/linux-i686/sl/thunderbird-60.2.1.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.3.0/linux-i686/sl/thunderbird-60.3.0.tar.bz2"; locale = "sl"; arch = "linux-i686"; - sha512 = "196a31e47578bcf064b42c3d3ed1ac3b623a54b5694fab72e1177257d68c13013352228a09ec8dd4fc53d91a0e8036b2b7c815432fdd35c624852cd74f98541c"; + sha512 = "c6e9ec49518f19bbfb045b85aec4f11e43645a55892cd3e8570f90b0c4fcc90f4e57848ed5419708c5544aa5df93b1a61786ca1422976938795bc7c5c2743098"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.2.1/linux-i686/sq/thunderbird-60.2.1.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.3.0/linux-i686/sq/thunderbird-60.3.0.tar.bz2"; locale = "sq"; arch = "linux-i686"; - sha512 = "5a2b966e7119853fd98e976e555831058aa0c8cfdc463dcc79ca698aa4bb5d9b43b5fa2e6cb60a51cfee987c360c651de509463002aeb9c4e1fbe58b6fa4dd08"; + sha512 = "e5586b535c014b400535680964c0ec03ef9a4d9cbd3bea4701293f681635faf6218744d8a8cb8781310ad4797143610ce1821de5c24232e990a24a87a57a7f2e"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.2.1/linux-i686/sr/thunderbird-60.2.1.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.3.0/linux-i686/sr/thunderbird-60.3.0.tar.bz2"; locale = "sr"; arch = "linux-i686"; - sha512 = "62666fe7d94f3486d1d5df1cf479bd21a13b9bdc9a4f24fa1f280a838c008d28a2fd6e78ac445ea6ce126fc54b60151e3c4f9b3820e231c8593fa83aab1076fa"; + sha512 = "7bbd3dd52ed742cc59d474f9235a1370d5cb8d9a805df87fffbc9eb13fa50d3bcba630a720effdfaab42580148a9328ba09869b09d06151eaa5ded55db13cbf3"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.2.1/linux-i686/sv-SE/thunderbird-60.2.1.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.3.0/linux-i686/sv-SE/thunderbird-60.3.0.tar.bz2"; locale = "sv-SE"; arch = "linux-i686"; - sha512 = "b8f75bfdb3ad9ffa768a5ef4cdfed93004232d9d4f301b0e5b9ce56fd47d34efc779fafcb67c0b848a83ed59c1fa4bb17dbdb583599a99b78186489099159d92"; + sha512 = "157772822f5f28fbbc4fe2b19b38c1cee3e11d7c62c802620e3b3df17898cf61d3c7ffd1e77e2373ddbfd67452e177eabdd34c3a025f7b4bbcb587dc2fa607b2"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.2.1/linux-i686/tr/thunderbird-60.2.1.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.3.0/linux-i686/tr/thunderbird-60.3.0.tar.bz2"; locale = "tr"; arch = "linux-i686"; - sha512 = "b72e4c0d1564248927e1f2d8922651e3f7e37e99de77dc548508d4c0c1951e0e59b461cad18cf0dca0145d7465fe7bac93ecb4841c18db2b57822b0014b2f83e"; + sha512 = "7748d29478930265e632973ccee211d3edef2e5ee5ff363145d57c9bbaf7257e8e963287eb854cce4de16ad976d54305be14bb848e164c9feaf223ad40e1c8e2"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.2.1/linux-i686/uk/thunderbird-60.2.1.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.3.0/linux-i686/uk/thunderbird-60.3.0.tar.bz2"; locale = "uk"; arch = "linux-i686"; - sha512 = "7287cb6fce1c1482e0adf00598139b0e9e97371171a14b15ea42652c5890fb1c7de0aa213220444c68c5fe33a43f242f0475b5836deebcfe5fc6b52e21c195e5"; + sha512 = "c8cc86f2c802f05131d2ceb2ab3fb1c3fc72c9253efd40833046c2022de61d581222275d84584938a3720f0d20df6eeee4ca50751554fe53fd7551577db0591b"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.2.1/linux-i686/vi/thunderbird-60.2.1.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.3.0/linux-i686/vi/thunderbird-60.3.0.tar.bz2"; locale = "vi"; arch = "linux-i686"; - sha512 = "07886cd20ea43fbac59055d5cf34776fd38616477f8c55f4af78031034f8198ef57d716b365ee7a08f267fef0e3b50ba188dd31b1ba1508545b85fd7001f4326"; + sha512 = "81bd7e3276e2b7ad50456d29fc84260b0cd694acaeea6818b0fdfcda91ed0e04b3c03b8721303c5b3a6cb8a7570c5b925922c9d6725a258c525250ff42c076e8"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.2.1/linux-i686/zh-CN/thunderbird-60.2.1.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.3.0/linux-i686/zh-CN/thunderbird-60.3.0.tar.bz2"; locale = "zh-CN"; arch = "linux-i686"; - sha512 = "d34dde5c5f063d8d79a0aa032f54602570426bcce920810d1fc3c8e842827fdbb0b8b9dfa3e4049bf37de4c98356f7e87942bfdd3f7483bb6e3dc7ddd2ebd246"; + sha512 = "2d120d666559ce4c0bbb1045d03aaa7c9f851c929b91fd6addc20c3a81ca7accba550f49540e3249ee227caa19aaf24414db995d930f0e02f651d75c230e3429"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.2.1/linux-i686/zh-TW/thunderbird-60.2.1.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.3.0/linux-i686/zh-TW/thunderbird-60.3.0.tar.bz2"; locale = "zh-TW"; arch = "linux-i686"; - sha512 = "e8de34531211a60099e677dd619e9e75883f0d5a935df4807b0075dc3d8c57c97dc364eef629896aa46066d290f7138ed67e002fe0cadf7e86b0c77cf99f080f"; + sha512 = "ad36e3c82d68215765a83cf0098bfc392b2e3f32dbdb7998f54e4b83885f5be53a65cf814990237d7cd35b4695a23f5a4dff363e185b5c75a5aa2248c96ab80e"; } ]; } diff --git a/pkgs/applications/networking/mailreaders/thunderbird/default.nix b/pkgs/applications/networking/mailreaders/thunderbird/default.nix index 419cc2fd2d84968c3060a156078a623ef8343720..69540d6092f8142c3d3f0aa9ca667a0e4b83d70f 100644 --- a/pkgs/applications/networking/mailreaders/thunderbird/default.nix +++ b/pkgs/applications/networking/mailreaders/thunderbird/default.nix @@ -24,11 +24,11 @@ let gcc = if stdenv.cc.isGNU then stdenv.cc.cc else stdenv.cc.cc.gcc; in stdenv.mkDerivation rec { name = "thunderbird-${version}"; - version = "60.2.1"; + version = "60.3.0"; src = fetchurl { url = "mirror://mozilla/thunderbird/releases/${version}/source/thunderbird-${version}.source.tar.xz"; - sha512 = "018l9pq03nzlirpaf285qpwvb8s4msam8n91d15lzc1bc1caq9zcy2dnrnvn5av3jlapm9ckz028iar66nhqxi2kkqbmiaq0v4s6kfp"; + sha512 = "39sicxgfzfx4dm50nn2l8mimyjpvfigdpmkbxk6lvvbi8xxl527631xxq0gh1di6iyp590vpwk16z7hvdfbqj2pd3231knjkl991hvc"; }; # from firefox, but without sound libraries @@ -48,14 +48,6 @@ in stdenv.mkDerivation rec { nativeBuildInputs = [ m4 autoconf213 which gnused pkgconfig perl python wrapperTool cargo rustc ]; patches = [ - # https://bugzilla.mozilla.org/show_bug.cgi?format=default&id=1479540 - # https://hg.mozilla.org/releases/mozilla-release/rev/bc651d3d910c - (fetchpatch { - name = "bc651d3d910c.patch"; - url = "https://hg.mozilla.org/releases/mozilla-release/raw-rev/bc651d3d910c"; - sha256 = "0iybkadsgsf6a3pq3jh8z1p110vmpkih8i35jfj8micdkhxzi89g"; - }) - # Remove buildconfig.html to prevent a dependency on clang etc. ../../browsers/firefox/no-buildconfig.patch ]; diff --git a/pkgs/applications/networking/modem-manager-gui/default.nix b/pkgs/applications/networking/modem-manager-gui/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..ca8a4d0fb0cb92fbf6aa6d358d021f681b516059 --- /dev/null +++ b/pkgs/applications/networking/modem-manager-gui/default.nix @@ -0,0 +1,50 @@ +{ stdenv, buildEnv, pkgconfig, python3, fetchhg, gtk3, glib, gdbm, gtkspell3, itstool, libappindicator-gtk3, perlPackages, glibcLocales, meson, ninja }: + +stdenv.mkDerivation rec { + name = "modem-manager-gui-${version}"; + version = "0.0.19.1"; + + src = fetchhg { + url = https://linuxonly@bitbucket.org/linuxonly/modem-manager-gui; + rev = "version ${version}"; + sha256 = "11iibh36567814h2bz41sa1072b86p1l13xyj670pwkh9k8kw8fd"; + }; + + LC_ALL = "en_US.utf-8"; + + nativeBuildInputs = [ + pkgconfig + python3 + perlPackages.Po4a + itstool + glibcLocales + meson + ninja + ]; + + buildInputs = [ + gtk3 + glib + gdbm + gtkspell3 + libappindicator-gtk3 + ]; + + postPatch = '' + patchShebangs man/manhelper.py + ''; + + meta = with stdenv.lib; { + description = "An app to send/receive SMS, make USSD requests, control mobile data usage and more"; + longDescription = '' + A simple GTK+ based GUI compatible with Modem manager, Wader and oFono + system services able to control EDGE/3G/4G broadband modem specific + functions. You can check balance of your SIM card, send or receive SMS + messages, control mobile traffic consumption and more. + ''; + homepage = https://linuxonly.ru/page/modem-manager-gui; + license = licenses.gpl3; + maintainers = with maintainers; [ ahuzik ]; + platforms = platforms.linux; + }; +} diff --git a/pkgs/applications/networking/p2p/transmission-remote-gtk/default.nix b/pkgs/applications/networking/p2p/transmission-remote-gtk/default.nix index 3ddbe9be4fc6e940b406c0d1612a776e7628e6a7..fdd00270d0ebd2ee73251b2d8adb86c7e7c089fb 100644 --- a/pkgs/applications/networking/p2p/transmission-remote-gtk/default.nix +++ b/pkgs/applications/networking/p2p/transmission-remote-gtk/default.nix @@ -5,13 +5,13 @@ stdenv.mkDerivation rec { name = "transmission-remote-gtk-${version}"; - version = "1.3.1"; + version = "1.4.0"; src = fetchFromGitHub { owner = "transmission-remote-gtk"; repo = "transmission-remote-gtk"; rev = "${version}"; - sha256 = "02q0vl7achx9rpd0iv0347h838bwzm7aj4k04y88g3bh8fi3cddh"; + sha256 = "126s7aqh9j06zvnwhjbql5x9ibz05pdrrzwb9c6h4qndvr8iqqff"; }; preConfigure = "./autogen.sh"; diff --git a/pkgs/applications/networking/p2p/tribler/default.nix b/pkgs/applications/networking/p2p/tribler/default.nix index 77ca7afe871e0fd90db8ce2c10af9fa56fb21a11..29ec8158099cae517559aa7c42d50a6fd27e55ce 100644 --- a/pkgs/applications/networking/p2p/tribler/default.nix +++ b/pkgs/applications/networking/p2p/tribler/default.nix @@ -3,11 +3,11 @@ stdenv.mkDerivation rec { name = "tribler-${version}"; - version = "7.0.2"; + version = "7.1.2"; src = fetchurl { - url = "https://github.com/Tribler/tribler/releases/download/v${version}/Tribler-v${version}.tar.xz"; - sha256 = "1p0d0l0sa0nrnbyx2gg50nklkljwvl581i9w3z5qbkfzc7jsdy42"; + url = "https://github.com/Tribler/tribler/releases/download/v${version}/Tribler-v${version}.tar.gz"; + sha256 = "1ayzqx4358qlx56hsnsn5s8xl6mzdb6nw4kwsalmp86dw6vmmis8"; }; buildInputs = [ @@ -41,6 +41,8 @@ stdenv.mkDerivation rec { pythonPackages.psutil pythonPackages.meliae pythonPackages.sip + pythonPackages.pillow + pythonPackages.networkx ]; postPatch = '' diff --git a/pkgs/applications/networking/protonmail-bridge/default.nix b/pkgs/applications/networking/protonmail-bridge/default.nix index a4a127db73bfc242e0ba4f139a1cf9feb8149ccc..3e74fbfb66af69b0d685a9150594a378fd5d1576 100644 --- a/pkgs/applications/networking/protonmail-bridge/default.nix +++ b/pkgs/applications/networking/protonmail-bridge/default.nix @@ -2,7 +2,7 @@ libsecret, libGL, libpulseaudio, glib, makeWrapper, makeDesktopItem }: let - version = "1.0.6-1"; + version = "1.1.0-1"; description = '' An application that runs on your computer in the background and seamlessly encrypts @@ -25,7 +25,7 @@ in stdenv.mkDerivation rec { src = fetchurl { url = "https://protonmail.com/download/protonmail-bridge_${version}_amd64.deb"; - sha256 = "1as4xdsik2w9clbrwp1k00491324cg6araz3jq2m013yg1cild28"; + sha256 = "0l29z208krnd3dginc203m4p5dlmnxf08vpmbm9xzlckwmswizkb"; }; nativeBuildInputs = [ makeWrapper ]; @@ -38,10 +38,10 @@ in stdenv.mkDerivation rec { installPhase = '' mkdir -p $out/{bin,lib,share/applications} - # mkdir -p $out/share/{applications,icons/hicolor/scalable/apps} + mkdir -p $out/share/{applications,icons/hicolor/scalable/apps} cp -r usr/lib/protonmail/bridge/Desktop-Bridge{,.sh} $out/lib - # cp usr/share/icons/protonmail/Desktop-Bridge.svg $out/share/icons/hicolor/scalable/apps/desktop-bridge.svg + cp usr/share/icons/protonmail/Desktop-Bridge.svg $out/share/icons/hicolor/scalable/apps/desktop-bridge.svg cp ${desktopItem}/share/applications/* $out/share/applications ln -s $out/lib/Desktop-Bridge $out/bin/Desktop-Bridge diff --git a/pkgs/applications/networking/remote/remmina/default.nix b/pkgs/applications/networking/remote/remmina/default.nix index e823977db204ad9a4758228414c92ee87c07adf7..dc17ccc4a370520fd086d0881b891714148bf24f 100644 --- a/pkgs/applications/networking/remote/remmina/default.nix +++ b/pkgs/applications/networking/remote/remmina/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchFromGitLab, cmake, pkgconfig, wrapGAppsHook +{ stdenv, fetchFromGitLab, cmake, ninja, pkgconfig, wrapGAppsHook , glib, gtk3, gettext, libxkbfile, libX11 , freerdp, libssh, libgcrypt, gnutls, makeDesktopItem , pcre, libdbusmenu-gtk3, libappindicator-gtk3 @@ -7,24 +7,11 @@ , openssl, gsettings-desktop-schemas, json-glib # The themes here are soft dependencies; only icons are missing without them. , hicolor-icon-theme, adwaita-icon-theme -, gnomeSupport ? true, libgnome-keyring }: with stdenv.lib; -let - - desktopItem = makeDesktopItem { - name = "remmina"; - desktopName = "Remmina"; - genericName = "Remmina Remote Desktop Client"; - exec = "remmina"; - icon = "remmina"; - comment = "Connect to remote desktops"; - categories = "GTK;GNOME;X-GNOME-NetworkSettings;Network;"; - }; - -in stdenv.mkDerivation rec { +stdenv.mkDerivation rec { name = "remmina-${version}"; version = "1.2.32"; @@ -35,22 +22,16 @@ in stdenv.mkDerivation rec { sha256 = "15szv1xs6drxq6qyksmxcfdz516ja4zm52r4yf6hwij3fgl8qdpw"; }; - nativeBuildInputs = [ pkgconfig ]; + nativeBuildInputs = [ cmake ninja pkgconfig wrapGAppsHook ]; buildInputs = [ - cmake wrapGAppsHook gsettings-desktop-schemas + gsettings-desktop-schemas glib gtk3 gettext libxkbfile libX11 freerdp libssh libgcrypt gnutls pcre libdbusmenu-gtk3 libappindicator-gtk3 libvncserver libpthreadstubs libXdmcp libxkbcommon libsecret libsoup spice-protocol spice-gtk epoxy at-spi2-core openssl hicolor-icon-theme adwaita-icon-theme json-glib - ] - ++ optional gnomeSupport libgnome-keyring; - - preConfigure = optionalString (!gnomeSupport) '' - substituteInPlace CMakeLists.txt \ - --replace "add_subdirectory(remmina-plugins-gnome)" "" - ''; + ]; cmakeFlags = [ "-DWITH_VTE=OFF" @@ -68,13 +49,8 @@ in stdenv.mkDerivation rec { ) ''; - postInstall = '' - mkdir -pv $out/share/applications - cp ${desktopItem}/share/applications/* $out/share/applications - ''; - meta = { - license = stdenv.lib.licenses.gpl2; + license = licenses.gpl2; homepage = https://gitlab.com/Remmina/Remmina; description = "Remote desktop client written in GTK+"; maintainers = with maintainers; [ melsigl ryantm ]; diff --git a/pkgs/applications/networking/syncplay/default.nix b/pkgs/applications/networking/syncplay/default.nix index 07444fbb9fe95e07cb922e6ca3443b32ecc42c70..5861513e7bd25f9f76f26e6360b0bc9bcc57eedb 100644 --- a/pkgs/applications/networking/syncplay/default.nix +++ b/pkgs/applications/networking/syncplay/default.nix @@ -1,17 +1,17 @@ -{ stdenv, fetchurl, python2Packages }: +{ stdenv, fetchurl, python3Packages }: -python2Packages.buildPythonApplication rec { +python3Packages.buildPythonApplication rec { name = "syncplay-${version}"; - version = "1.5.5"; + version = "1.6.0"; format = "other"; src = fetchurl { - url = https://github.com/Syncplay/syncplay/archive/v1.5.5.tar.gz; - sha256 = "0g12hm84c48fjrmwljl0ii62f55vm6fk2mv8vna7fadabmk6dwhr"; + url = https://github.com/Syncplay/syncplay/archive/v1.6.0.tar.gz; + sha256 = "19x7b694p8b3qp578qk8q4g0pybhfjd4zk8rgrggz40s1yyfnwy5"; }; - propagatedBuildInputs = with python2Packages; [ pyside twisted ]; + propagatedBuildInputs = with python3Packages; [ pyside twisted ]; makeFlags = [ "DESTDIR=" "PREFIX=$(out)" ]; diff --git a/pkgs/applications/networking/syncthing/default.nix b/pkgs/applications/networking/syncthing/default.nix index 86c8b6db2c47fa32a1e1ed7c043b5cb2fa1bf87e..8bd21b1a6a09c5169de4ab6c4c3bb3f41624b939 100644 --- a/pkgs/applications/networking/syncthing/default.nix +++ b/pkgs/applications/networking/syncthing/default.nix @@ -3,14 +3,14 @@ let common = { stname, target, patches ? [], postInstall ? "" }: stdenv.mkDerivation rec { - version = "0.14.51"; + version = "0.14.52"; name = "${stname}-${version}"; src = fetchFromGitHub { owner = "syncthing"; repo = "syncthing"; rev = "v${version}"; - sha256 = "1ycly3vh10s04pk0fk9hb0my7w5b16dfgmnk1mi0zjylcii3yzi5"; + sha256 = "1qzzbqfyjqlgzysyf6dr0xsm3gn35irmllxjjd94v169swvkk5kd"; }; inherit patches; diff --git a/pkgs/applications/office/aesop/default.nix b/pkgs/applications/office/aesop/default.nix index 64e2c0b946794d6378822edb06720e990f5c9019..b510fe950a3dadd4ee4a32ac32c4e9d3f4cd8727 100644 --- a/pkgs/applications/office/aesop/default.nix +++ b/pkgs/applications/office/aesop/default.nix @@ -1,9 +1,9 @@ -{ stdenv, fetchFromGitHub, fetchpatch, vala, pkgconfig, meson, ninja, python3, granite, gtk3 +{ stdenv, fetchFromGitHub, fetchpatch, vala_0_40, pkgconfig, meson, ninja, python3, granite, gtk3 , gnome3, desktop-file-utils, json-glib, libsoup, poppler, gobjectIntrospection, wrapGAppsHook }: stdenv.mkDerivation rec { pname = "aesop"; - version = "1.0.5"; + version = "1.0.7"; name = "${pname}-${version}"; @@ -21,11 +21,12 @@ stdenv.mkDerivation rec { ninja pkgconfig python3 - vala + vala_0_40 # should be `elementary.vala` when elementary attribute set is merged wrapGAppsHook ]; buildInputs = [ + gnome3.defaultIconTheme # should be `elementary.defaultIconTheme`when elementary attribute set is merged gnome3.libgee granite gtk3 @@ -34,14 +35,6 @@ stdenv.mkDerivation rec { poppler ]; - # Fix build with vala 0.42 - patches = [ - (fetchpatch { - url = "https://github.com/lainsce/aesop/commit/a90b3c711bd162583533370deb031c2c6254c82d.patch"; - sha256 = "1zf831g6sqq3966q0i00x3jhlbfh9blcky6pnyp5qp59hxyxy169"; - }) - ]; - postPatch = '' chmod +x meson/post_install.py patchShebangs meson/post_install.py @@ -49,9 +42,9 @@ stdenv.mkDerivation rec { meta = with stdenv.lib; { description = "The simplest PDF viewer around"; - homepage = https://github.com/lainsce/aesop; - license = licenses.gpl2Plus; + homepage = https://github.com/lainsce/aesop; + license = licenses.gpl2Plus; maintainers = with maintainers; [ worldofpeace ]; - platforms = platforms.linux; + platforms = platforms.linux; }; } diff --git a/pkgs/applications/office/bookworm/default.nix b/pkgs/applications/office/bookworm/default.nix index 45c794c82ea55e8986142f9af70ea4817a8602e8..bc2f260c703030eeeb34ed340591b2d54e97b4dd 100644 --- a/pkgs/applications/office/bookworm/default.nix +++ b/pkgs/applications/office/bookworm/default.nix @@ -1,46 +1,70 @@ -{ stdenv, fetchFromGitHub, vala, pkgconfig, libxml2, cmake, ninja, gtk3, granite, gnome3 -, gobjectIntrospection, sqlite, poppler, poppler_utils, html2text, unzip, unar, wrapGAppsHook }: +{ stdenv, fetchFromGitHub, fetchpatch, vala_0_40, python3, python2, pkgconfig, libxml2, meson, ninja, gtk3, granite, gnome3 +, gobjectIntrospection, sqlite, poppler, poppler_utils, html2text, curl, gnugrep, coreutils, bash, unzip, unar, wrapGAppsHook }: stdenv.mkDerivation rec { pname = "bookworm"; - version = "1.0.0"; + version = "4f7b118281667d22f1b3205edf0b775341fa49cb"; - name = "${pname}-${version}"; + name = "${pname}-2018-10-21"; src = fetchFromGitHub { owner = "babluboy"; repo = pname; rev = version; - sha256 = "0nv1nxird0s0qfhh8fr82mkj4qimhklw1bwcjwmvjdsvsxxs9520"; + sha256 = "0bcyim87zk4b4xmgfs158lnds3y8jg7ppzw54kjpc9rh66fpn3b9"; }; + # See: https://github.com/babluboy/bookworm/pull/220 + patches = [ + (fetchpatch { + url = "https://github.com/worldofpeace/bookworm/commit/b2faf685c46b95d6a2d4ec3725e4e4122b61e99a.patch"; + sha256 = "14az86cj5j65hngfflrp1rmnrkdrhg2a8pl7www3jgfwasxay975"; + }) + ]; + nativeBuildInputs = [ - cmake + bash gobjectIntrospection libxml2 + meson ninja pkgconfig - vala + python3 + vala_0_40 # should be `elementary.vala` when elementary attribute set is merged wrapGAppsHook ]; buildInputs = with gnome3; [ glib + gnome3.defaultIconTheme # should be `elementary.defaultIconTheme`when elementary attribute set is merged granite gtk3 html2text libgee poppler + python2 sqlite webkitgtk ]; + postPatch = '' + chmod +x meson/post_install.py + patchShebangs meson/post_install.py + ''; + + # These programs are expected in PATH from the source code and scripts preFixup = '' gappsWrapperArgs+=( - --prefix PATH : "${stdenv.lib.makeBinPath [ unzip unar poppler_utils html2text ]}" + --prefix PATH : "${stdenv.lib.makeBinPath [ unzip unar poppler_utils html2text coreutils curl gnugrep ]}" + --prefix PATH : $out/bin ) ''; + postFixup = '' + patchShebangs $out/share/bookworm/scripts/mobi_lib/*.py + patchShebangs $out/share/bookworm/scripts/tasks/*.sh + ''; + meta = with stdenv.lib; { description = "A simple, focused eBook reader"; longDescription = '' diff --git a/pkgs/applications/office/ledger-web/Gemfile.lock b/pkgs/applications/office/ledger-web/Gemfile.lock index 2c94c53ebc998dac4bd6c2abea76ba41ae089f27..290adb0e8e3d65fb254ba0c8aa8ef0d98341a161 100644 --- a/pkgs/applications/office/ledger-web/Gemfile.lock +++ b/pkgs/applications/office/ledger-web/Gemfile.lock @@ -17,7 +17,7 @@ GEM sinatra-session multi_json (1.12.1) pg (0.18.4) - rack (1.6.4) + rack (1.6.11) rack-protection (1.5.3) rack rack-test (0.6.3) @@ -55,7 +55,7 @@ PLATFORMS ruby DEPENDENCIES - ledger_web (= 1.5.2) + ledger_web BUNDLED WITH - 1.12.5 + 1.16.4 diff --git a/pkgs/applications/office/ledger-web/gemset.nix b/pkgs/applications/office/ledger-web/gemset.nix index 62e2ad54847d3fba6b192d34be61939d1a621b2f..acd1bed25a082f33c7ef9352297584de3fcda0e5 100644 --- a/pkgs/applications/office/ledger-web/gemset.nix +++ b/pkgs/applications/office/ledger-web/gemset.nix @@ -32,6 +32,7 @@ version = "1.5.1"; }; ledger_web = { + dependencies = ["database_cleaner" "directory_watcher" "pg" "rack" "rspec" "sequel" "sinatra" "sinatra-contrib" "sinatra-session"]; source = { remotes = ["https://rubygems.org"]; sha256 = "0i4vagaiyayymlr41rsy4lg2cl1r011ib0ql9dgjadfy6imb4kqh"; @@ -58,10 +59,10 @@ rack = { source = { remotes = ["https://rubygems.org"]; - sha256 = "09bs295yq6csjnkzj7ncj50i6chfxrhmzg1pk6p0vd2lb9ac8pj5"; + sha256 = "1g9926ln2lw12lfxm4ylq1h6nl0rafl10za3xvjzc87qvnqic87f"; type = "gem"; }; - version = "1.6.4"; + version = "1.6.11"; }; rack-protection = { dependencies = ["rack"]; @@ -82,6 +83,7 @@ version = "0.6.3"; }; rspec = { + dependencies = ["rspec-core" "rspec-expectations" "rspec-mocks"]; source = { remotes = ["https://rubygems.org"]; sha256 = "16g3mmih999f0b6vcz2c3qsc7ks5zy4lj1rzjh8hf6wk531nvc6s"; @@ -90,6 +92,7 @@ version = "3.5.0"; }; rspec-core = { + dependencies = ["rspec-support"]; source = { remotes = ["https://rubygems.org"]; sha256 = "12yndf7y6g3s1306bv1aycsmd0gjy5m172spdhx54svca2fcpzy1"; @@ -98,6 +101,7 @@ version = "3.5.2"; }; rspec-expectations = { + dependencies = ["diff-lcs" "rspec-support"]; source = { remotes = ["https://rubygems.org"]; sha256 = "0bbqfrb1x8gmwf8x2xhhwvvlhwbbafq4isbvlibxi6jk602f09gs"; @@ -106,6 +110,7 @@ version = "3.5.0"; }; rspec-mocks = { + dependencies = ["diff-lcs" "rspec-support"]; source = { remotes = ["https://rubygems.org"]; sha256 = "0nl3ksivh9wwrjjd47z5dggrwx40v6gpb3a0gzbp1gs06a5dmk24"; @@ -130,6 +135,7 @@ version = "4.37.0"; }; sinatra = { + dependencies = ["rack" "rack-protection" "tilt"]; source = { remotes = ["https://rubygems.org"]; sha256 = "1b81kbr65mmcl9cdq2r6yc16wklyp798rxkgmm5pr9fvsj7jwmxp"; @@ -138,6 +144,7 @@ version = "1.4.7"; }; sinatra-contrib = { + dependencies = ["backports" "multi_json" "rack-protection" "rack-test" "sinatra" "tilt"]; source = { remotes = ["https://rubygems.org"]; sha256 = "0vi3i0icbi2figiayxpvxbqpbn1syma7w4p4zw5mav1ln4c7jnfr"; @@ -146,6 +153,7 @@ version = "1.4.7"; }; sinatra-session = { + dependencies = ["sinatra"]; source = { remotes = ["https://rubygems.org"]; sha256 = "183xl8i4d2hc03afd1i52gwn2xi3vzrv02g22llhfy5wkmm44gmq"; diff --git a/pkgs/applications/office/libreoffice/wrapper.nix b/pkgs/applications/office/libreoffice/wrapper.nix index 8566bd76e1e22f4fa70d082f7ec8b21132d232a0..ce8910d76d45ab8f4b89fc2d22f33be69644881d 100644 --- a/pkgs/applications/office/libreoffice/wrapper.nix +++ b/pkgs/applications/office/libreoffice/wrapper.nix @@ -13,4 +13,7 @@ in for i in $(ls "${libreoffice}/bin/"); do test "$i" = "soffice" || ln -s soffice "$out/bin/$(basename "$i")" done -'') // { inherit libreoffice dbus; } +'') // { + inherit libreoffice dbus; + meta = libreoffice.meta; +} diff --git a/pkgs/applications/office/scribus/unstable.nix b/pkgs/applications/office/scribus/unstable.nix new file mode 100644 index 0000000000000000000000000000000000000000..4b1595db42a48d4ad4fbeb526e7a86d923c4dd85 --- /dev/null +++ b/pkgs/applications/office/scribus/unstable.nix @@ -0,0 +1,39 @@ +{ stdenv, fetchsvn, makeWrapper, pkgconfig, cmake, qtbase, cairo, pixman, +boost, cups, fontconfig, freetype, hunspell, libjpeg, libtiff, libxml2, lcms2, +podofo, poppler, poppler_data, python2, harfbuzz, qtimageformats, qttools }: + +let + pythonEnv = python2.withPackages(ps: [ps.tkinter ps.pillow]); + revision = "22730"; +in +stdenv.mkDerivation rec { + name = "scribus-unstable-${version}"; + version = "2018-10-13"; + + src = fetchsvn { + url = "svn://scribus.net/trunk/Scribus"; + rev = revision; + sha256 = "1nlg4qva0fach8fi07r1pakjjlijishpwzlgpnxyaz7r31yjaw63"; + }; + + enableParallelBuilding = true; + + buildInputs = [ + makeWrapper pkgconfig cmake qtbase cairo pixman boost cups fontconfig + freetype hunspell libjpeg libtiff libxml2 lcms2 podofo poppler + poppler_data pythonEnv harfbuzz qtimageformats qttools + ]; + + postFixup = '' + wrapProgram $out/bin/scribus \ + --prefix QT_PLUGIN_PATH : "${qtbase}/${qtbase.qtPluginPrefix}" + ''; + + meta = { + maintainers = [ stdenv.lib.maintainers.erictapen ]; + platforms = stdenv.lib.platforms.linux; + description = "Desktop Publishing (DTP) and Layout program for Linux"; + homepage = http://www.scribus.net; + license = stdenv.lib.licenses.gpl2; + }; +} diff --git a/pkgs/applications/office/spice-up/default.nix b/pkgs/applications/office/spice-up/default.nix index 520510698e3c07b95df084e14f4cfcae95921e60..3141223d72837ae4a858100b1308e6e99bd1bcdf 100644 --- a/pkgs/applications/office/spice-up/default.nix +++ b/pkgs/applications/office/spice-up/default.nix @@ -12,25 +12,27 @@ , ninja , libgudev , libevdev -, vala +, libsoup +, vala_0_40 , wrapGAppsHook }: stdenv.mkDerivation rec { name = "spice-up-${version}"; - version = "1.3.2"; + version = "1.7.0"; src = fetchFromGitHub { owner = "Philip-Scott"; repo = "Spice-up"; rev = version; - sha256 = "087cdi7na93pgz7vf046h94v5ydvpiccpwhllq85ix8g4pa5rp85"; + sha256 = "1qb1hlw7g581dmgg5mh832ixjkcgqm3lqzj6xma2cz8wdncwwjaq"; }; + USER = "nix-build-user"; nativeBuildInputs = [ pkgconfig wrapGAppsHook - vala + vala_0_40 # should be `elementary.vala` when elementary attribute set is merged cmake ninja gettext @@ -38,12 +40,14 @@ stdenv.mkDerivation rec { gobjectIntrospection # For setup hook ]; buildInputs = [ - gtk3 - granite + gnome3.defaultIconTheme # should be `elementary.defaultIconTheme`when elementary attribute set is merged gnome3.libgee + granite + gtk3 json-glib - libgudev libevdev + libgudev + libsoup ]; meta = with stdenv.lib; { diff --git a/pkgs/applications/science/astronomy/gildas/default.nix b/pkgs/applications/science/astronomy/gildas/default.nix index 802f558731a874fbdfff7e5b4b97395d13d96236..65e12125801a80c8f026ced84982b3ece198bbe2 100644 --- a/pkgs/applications/science/astronomy/gildas/default.nix +++ b/pkgs/applications/science/astronomy/gildas/default.nix @@ -7,8 +7,8 @@ let in stdenv.mkDerivation rec { - srcVersion = "oct18b"; - version = "20181001_b"; + srcVersion = "nov18a"; + version = "20181101_a"; name = "gildas-${version}"; src = fetchurl { @@ -16,7 +16,7 @@ stdenv.mkDerivation rec { # source code of the previous release to a different directory urls = [ "http://www.iram.fr/~gildas/dist/gildas-src-${srcVersion}.tar.gz" "http://www.iram.fr/~gildas/dist/archive/gildas/gildas-src-${srcVersion}.tar.gz" ]; - sha256 = "1q54q7y4zdax9vr28pvmy5g34kyr92jr3v1rkpjw7lxjafyqwy27"; + sha256 = "1dl2v8y6vrwaxm3b7nf6dv3ipzybhlhy2kxwnwgc7gqz5704251v"; }; enableParallelBuilding = true; diff --git a/pkgs/applications/science/biology/hmmer/default.nix b/pkgs/applications/science/biology/hmmer/default.nix index 8552aa34c4336146e4f0250f56db0e7d180215b3..e43d48db55f31fd5cba20269007a5b7a7fd12e6e 100644 --- a/pkgs/applications/science/biology/hmmer/default.nix +++ b/pkgs/applications/science/biology/hmmer/default.nix @@ -1,28 +1,25 @@ { stdenv, fetchurl }: stdenv.mkDerivation rec { - version = "3.1b2"; + version = "3.2.1"; name = "hmmer-${version}"; src = fetchurl { - url = "http://eddylab.org/software/hmmer3/${version}/${name}.tar.gz"; - sha256 = "0djmgc0pfli0jilfx8hql1axhwhqxqb8rxg2r5rg07aw73sfs5nx"; + url = "http://eddylab.org/software/hmmer/${name}.tar.gz"; + sha256 = "171bivy6xhgjsz5nv53n81pc3frnwz29ylblawk2bv46szwjjqd5"; }; meta = with stdenv.lib; { description = "Biosequence analysis using profile hidden Markov models"; longDescription = '' -HMMER is used for searching sequence databases for sequence homologs, and for making sequence alignments. It implements methods using probabilistic models called profile hidden Markov models (profile HMMs). - -HMMER is often used together with a profile database, such as Pfam or many of the databases that participate in Interpro. But HMMER can also work with query sequences, not just profiles, just like BLAST. For example, you can search a protein query sequence against a database with phmmer, or do an iterative search with jackhmmer. - -HMMER is designed to detect remote homologs as sensitively as possible, relying on the strength of its underlying probability models. In the past, this strength came at significant computational expense, but as of the new HMMER3 project, HMMER is now essentially as fast as BLAST. - -HMMER can be downloaded and installed as a command line tool on your own hardware, and now it is also more widely accessible to the scientific community via new search servers at the European Bioinformatics Institute. + HMMER is used for searching sequence databases for sequence homologs, and for making sequence alignments. It implements methods using probabilistic models called profile hidden Markov models (profile HMMs). + HMMER is often used together with a profile database, such as Pfam or many of the databases that participate in Interpro. But HMMER can also work with query sequences, not just profiles, just like BLAST. For example, you can search a protein query sequence against a database with phmmer, or do an iterative search with jackhmmer. + HMMER is designed to detect remote homologs as sensitively as possible, relying on the strength of its underlying probability models. In the past, this strength came at significant computational expense, but as of the new HMMER3 project, HMMER is now essentially as fast as BLAST. + HMMER can be downloaded and installed as a command line tool on your own hardware, and now it is also more widely accessible to the scientific community via new search servers at the European Bioinformatics Institute. ''; homepage = http://hmmer.org/; license = licenses.gpl3; maintainers = [ maintainers.iimog ]; - platforms = platforms.linux; + platforms = [ "x86_64-linux" "i686-linux" ]; }; } diff --git a/pkgs/applications/science/biology/igv/default.nix b/pkgs/applications/science/biology/igv/default.nix index 89e38104feb578407e8526ddf2ad655d42efd5de..4ffbaf85fbda19f3634db4031c57010948d05cd8 100644 --- a/pkgs/applications/science/biology/igv/default.nix +++ b/pkgs/applications/science/biology/igv/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { name = "igv-${version}"; - version = "2.4.14"; + version = "2.4.15"; src = fetchurl { url = "https://data.broadinstitute.org/igv/projects/downloads/2.4/IGV_${version}.zip"; - sha256 = "0z9hk01czkdgi55b0qdvvi43jsqkkx6gl7wglamv425c6rklcvhc"; + sha256 = "000l9hnkjbl9js7v8fyssgl4imrl0qd15mgz37qx2bwvimdp75gh"; }; buildInputs = [ unzip jre ]; diff --git a/pkgs/applications/science/biology/mosdepth/default.nix b/pkgs/applications/science/biology/mosdepth/default.nix index 4b4920a6ca3a05e8f2ee1a3873b1e73312fbe6b1..3cd83a5cdd2723118e9fc612aa6e3eae8cd98394 100644 --- a/pkgs/applications/science/biology/mosdepth/default.nix +++ b/pkgs/applications/science/biology/mosdepth/default.nix @@ -4,8 +4,8 @@ let hts-nim = fetchFromGitHub { owner = "brentp"; repo = "hts-nim"; - rev = "9cd83e30522ab64cd71eb8209be4154aa5579ce1"; - sha256 = "10g408idy14667varq1syf06rrbpk63i3ib7i5dh1md4ib19av6f"; + rev = "v0.2.5"; + sha256 = "1fma99rjqxgg9dihkd10hm1jjp5amsk5wsxnvq1lk4mcsjix5xqb"; }; docopt = fetchFromGitHub { @@ -28,7 +28,10 @@ in stdenv.mkDerivation rec { buildInputs = [ nim ]; - buildPhase = "nim -p:${hts-nim}/src -p:${docopt}/src c -d:release mosdepth.nim"; + buildPhase = '' + HOME=$TMPDIR + nim -p:${hts-nim}/src -p:${docopt}/src c --nilseqs:on -d:release mosdepth.nim + ''; installPhase = "install -Dt $out/bin mosdepth"; fixupPhase = "patchelf --set-rpath ${stdenv.lib.makeLibraryPath [ stdenv.cc.cc htslib pcre ]} $out/bin/mosdepth"; diff --git a/pkgs/applications/science/chemistry/jmol/default.nix b/pkgs/applications/science/chemistry/jmol/default.nix index dab30e90f4d828d813aea75ee38d8ff7d2fd4f4c..72dc154b71d47a5fabf3cb67083f858a5214654f 100644 --- a/pkgs/applications/science/chemistry/jmol/default.nix +++ b/pkgs/applications/science/chemistry/jmol/default.nix @@ -17,7 +17,7 @@ let }; in stdenv.mkDerivation rec { - version = "14.29.26"; + version = "14.29.28"; pname = "jmol"; name = "${pname}-${version}"; @@ -25,7 +25,7 @@ stdenv.mkDerivation rec { baseVersion = "${lib.versions.major version}.${lib.versions.minor version}"; in fetchurl { url = "mirror://sourceforge/jmol/Jmol/Version%20${baseVersion}/Jmol%20${version}/Jmol-${version}-binary.tar.gz"; - sha256 = "0a728lwqbbnm5v2spi5rbqy3xldbcf2gcsf48rkq3p43laps3630"; + sha256 = "0m72w5qsnsc07p7jjya78i4yz7zrdjqj8zpk65sa0xa2fh1y01g0"; }; patchPhase = '' diff --git a/pkgs/applications/science/electronics/kicad/default.nix b/pkgs/applications/science/electronics/kicad/default.nix index c92da3eeb2928f05130ce5f803b84d7526e82162..5d0165eb6ddab031de0af52307a21b3a45bdf8c5 100644 --- a/pkgs/applications/science/electronics/kicad/default.nix +++ b/pkgs/applications/science/electronics/kicad/default.nix @@ -13,11 +13,11 @@ with lib; stdenv.mkDerivation rec { name = "kicad-${version}"; series = "5.0"; - version = "5.0.0"; + version = "5.0.1"; src = fetchurl { url = "https://launchpad.net/kicad/${series}/${version}/+download/kicad-${version}.tar.xz"; - sha256 = "17nqjszyvd25wi6550j981whlnb1wxzmlanljdjihiki53j84x9p"; + sha256 = "0skig2wdxxc2677m8a8m1xrg3pkhqiqnmkcyr2hv0b2j30rzdr2z"; }; postPatch = '' diff --git a/pkgs/applications/science/electronics/librepcb/default.nix b/pkgs/applications/science/electronics/librepcb/default.nix index 33eb52c18ee7ebc2206a2110fd5231a7eda19834..c0831847b720e570c6143374ec3e14ad369af042 100644 --- a/pkgs/applications/science/electronics/librepcb/default.nix +++ b/pkgs/applications/science/electronics/librepcb/default.nix @@ -2,14 +2,14 @@ stdenv.mkDerivation rec { name = "librepcb-${version}"; - version = "20180628"; + version = "20181031"; src = fetchFromGitHub { owner = "LibrePCB"; repo = "LibrePCB"; fetchSubmodules = true; - rev = "68577ecf8f39299ef4d81ff964b01c3908d1f10b"; - sha256 = "1ca4q8b8fhp19vq5yi55sq6xlsz14ihw3i0h7rq5fw0kigpjldmz"; + rev = "3cf8dba9fa88e5b392d639c9fdbcf3a44664170a"; + sha256 = "0kr4mii5w3kj3kqvhgq7zjxjrq44scx8ky0x77gyqmwvwfwk7nmx"; }; enableParallelBuilding = true; diff --git a/pkgs/applications/science/electronics/ngspice/default.nix b/pkgs/applications/science/electronics/ngspice/default.nix index 196374706e1f8c05ead16ba67209bc8fae510e8b..4777c89e876b5ca0138eb68e07e2ff6bce73ea2d 100644 --- a/pkgs/applications/science/electronics/ngspice/default.nix +++ b/pkgs/applications/science/electronics/ngspice/default.nix @@ -2,11 +2,11 @@ , readline, libX11, libICE, libXaw, libXmu, libXext, libXt, fftw }: stdenv.mkDerivation { - name = "ngspice-28"; + name = "ngspice-29"; src = fetchurl { - url = "mirror://sourceforge/ngspice/ngspice-28.tar.gz"; - sha256 = "0rnz2rdgyav16w7wfn3sfrk2lwvvgz1fh0l9107zkcldijklz04l"; + url = "mirror://sourceforge/ngspice/ngspice-29.tar.gz"; + sha256 = "0jjwz73naq7l9yhwdqbpnrfckywp2ffkppivxjv8w92zq7xhyvcd"; }; nativeBuildInputs = [ flex bison ]; diff --git a/pkgs/applications/science/logic/acgtk/default.nix b/pkgs/applications/science/logic/acgtk/default.nix index b787a4e7a01ce6749c8d37a5c6877e34cade6b75..729aef4e21c236f0edea90e77f2e1558257e08e2 100644 --- a/pkgs/applications/science/logic/acgtk/default.nix +++ b/pkgs/applications/science/logic/acgtk/default.nix @@ -1,57 +1,27 @@ -{ stdenv, fetchurl, ocamlPackages, - buildBytecode ? true, - buildNative ? true, - installExamples ? true, - installEmacsMode ? true }: - -let inherit (stdenv.lib) versionAtLeast optionalString; in - -let inherit (ocamlPackages) ocaml camlp4; in - -assert buildBytecode || buildNative; +{ stdenv, fetchurl, dune, ocamlPackages }: stdenv.mkDerivation { - name = "acgtk-1.3.1"; + name = "acgtk-1.5.0"; src = fetchurl { - url = http://calligramme.loria.fr/acg/software/acg-1.3.1-20170303.tar.gz; - sha256 = "1hhrf6bx2x2wbv5ldn4fnxhpr9lyrj3zh1vcnx8wf8f06ih4rzfq"; + url = http://calligramme.loria.fr/acg/software/acg-1.5.0-20181019.tar.gz; + sha256 = "14n003gxzw5w79hlpw1ja4nq97jqf9zqyg00ihvpxw4bv9jlm8jm"; }; - buildInputs = with ocamlPackages; [ - ocaml findlib camlp4 ansiterminal biniou bolt cairo2 dypgen easy-format ocf yojson - ]; - - patches = [ ./install-emacs-to-site-lisp.patch - ./use-nix-ocaml-byteflags.patch ]; - - postPatch = optionalString (camlp4 != null) '' - substituteInPlace src/Makefile.master.in \ - --replace "+camlp4" "${camlp4}/lib/ocaml/${ocaml.version}/site-lib/camlp4/" - '' + optionalString (versionAtLeast (stdenv.lib.getVersion ocamlPackages.yojson) "1.4") '' - substituteInPlace src/scripting/Makefile.in --replace yojson.cmo yojson.cma - ''; - - # The bytecode executable is dependent on the dynamic library provided by - # ANSITerminal. We can use the -dllpath flag of ocamlc (analogous to - # -rpath) to make sure that ocamlrun is able to link the library at - # runtime and that Nix detects a runtime dependency. - NIX_OCAML_BYTEFLAGS = "-dllpath ${ocamlPackages.ansiterminal}/lib/ocaml/${ocaml.version}/site-lib/ANSITerminal"; + buildInputs = [ dune ] ++ (with ocamlPackages; [ + ocaml findlib ansiterminal cairo2 fmt logs menhir mtime ocf + ]); - buildFlags = optionalString buildBytecode "byte" - + " " - + optionalString buildNative "opt"; + buildPhase = "dune build"; - installTargets = "install" - + " " + optionalString installExamples "install-examples" - + " " + optionalString installEmacsMode "install-emacs"; + inherit (dune) installPhase; meta = with stdenv.lib; { homepage = http://calligramme.loria.fr/acg/; description = "A toolkit for developing ACG signatures and lexicon"; license = licenses.cecill20; - platforms = ocaml.meta.platforms or []; + inherit (ocamlPackages.ocaml.meta) platforms; maintainers = [ maintainers.jirkamarsik ]; }; } diff --git a/pkgs/applications/science/logic/acgtk/install-emacs-to-site-lisp.patch b/pkgs/applications/science/logic/acgtk/install-emacs-to-site-lisp.patch deleted file mode 100644 index 43ddd20b4a390881cd502d1096e345906362bd15..0000000000000000000000000000000000000000 --- a/pkgs/applications/science/logic/acgtk/install-emacs-to-site-lisp.patch +++ /dev/null @@ -1,23 +0,0 @@ ---- acg-1.1-20140905/Makefile.in 2014-10-24 15:21:39.442287208 +0200 -+++ acg-1.1-20140905/Makefile.in.new 2014-10-24 15:24:58.557117228 +0200 -@@ -35,6 +35,7 @@ - ACGC_DIR=src/acg-data - - DATA_DIR=@datarootdir@/acgtk -+EMACS_DIR=@prefix@/share/emacs/site-lisp - - - -@@ -82,10 +83,10 @@ - rm -r $(DATA_DIR) - - install-emacs: -- mkdir -p $(DATA_DIR) && cp -r emacs $(DATA_DIR)/. -+ mkdir -p $(EMACS_DIR) && cp emacs/acg.el $(EMACS_DIR) - - uninstall-emacs: -- rm -rf $(DATA_DIR)/emacs -+ rm -rf $(EMACS_DIR)/emacs - - install-examples: - mkdir -p $(DATA_DIR) && cp -r examples $(DATA_DIR)/. diff --git a/pkgs/applications/science/logic/acgtk/use-nix-ocaml-byteflags.patch b/pkgs/applications/science/logic/acgtk/use-nix-ocaml-byteflags.patch deleted file mode 100644 index 26ade37e4521152c03efe6480b72cfc8911daf7f..0000000000000000000000000000000000000000 --- a/pkgs/applications/science/logic/acgtk/use-nix-ocaml-byteflags.patch +++ /dev/null @@ -1,11 +0,0 @@ ---- acg-1.1-20140905/src/Makefile.master.in 2014-10-27 10:59:42.263382081 +0100 -+++ acg-1.1-20140905/src/Makefile.master.in.new 2014-10-27 10:59:59.683597972 +0100 -@@ -23,7 +23,7 @@ - # All warnings are treated as errors - WARNINGS = @OCAML09WARNINGS@ -warn-error A - COMMONFLAGS= $(WARNINGS) @TYPES@ --BYTEFLAGS = $(COMMONFLAGS) $(DEBUGFLAG) -+BYTEFLAGS = $(COMMONFLAGS) $(DEBUGFLAG) $(NIX_OCAML_BYTEFLAGS) - OPTFLAGS = $(COMMONFLAGS) - LFLAGS= -a - diff --git a/pkgs/applications/science/logic/coq/8.4.nix b/pkgs/applications/science/logic/coq/8.4.nix deleted file mode 100644 index c3da1205ab0cb05d819b2ce21ce3fdcbd19d124c..0000000000000000000000000000000000000000 --- a/pkgs/applications/science/logic/coq/8.4.nix +++ /dev/null @@ -1,97 +0,0 @@ -# - coqide compilation can be disabled by setting lablgtk to null; -# - The csdp program used for the Micromega tactic is statically referenced. -# However, coq can build without csdp by setting it to null. -# In this case some Micromega tactics will search the user's path for the csdp program and will fail if it is not found. - -{stdenv, fetchurl, pkgconfig, writeText, ocaml, findlib, camlp5, ncurses, lablgtk ? null, csdp ? null}: - -let - version = "8.4pl6"; - coq-version = "8.4"; - buildIde = lablgtk != null; - ideFlags = if buildIde then "-lablgtkdir ${lablgtk}/lib/ocaml/*/site-lib/lablgtk2 -coqide opt" else ""; - csdpPatch = if csdp != null then '' - substituteInPlace plugins/micromega/sos.ml --replace "; csdp" "; ${csdp}/bin/csdp" - substituteInPlace plugins/micromega/coq_micromega.ml --replace "System.is_in_system_path \"csdp\"" "true" - '' else ""; - -self = -stdenv.mkDerivation { - name = "coq-${version}"; - - inherit coq-version; - inherit ocaml camlp5; - - src = fetchurl { - url = "https://coq.inria.fr/distrib/V${version}/files/coq-${version}.tar.gz"; - sha256 = "1mpbj4yf36kpjg2v2sln12i8dzqn8rag6fd07hslj2lpm4qs4h55"; - }; - - nativeBuildInputs = [ pkgconfig ]; - buildInputs = [ ocaml findlib camlp5 ncurses lablgtk ]; - - patches = [ ./configure.patch ]; - - postPatch = '' - UNAME=$(type -tp uname) - RM=$(type -tp rm) - substituteInPlace configure --replace "/bin/uname" "$UNAME" - substituteInPlace tools/beautify-archive --replace "/bin/rm" "$RM" - ${csdpPatch} - ''; - - preConfigure = '' - configureFlagsArray=( - -opt - -camldir ${ocaml}/bin - -camlp5dir $(ocamlfind query camlp5) - ${ideFlags} - ) - ''; - - prefixKey = "-prefix "; - - buildFlags = "revision coq coqide"; - - setupHook = writeText "setupHook.sh" '' - addCoqPath () { - if test -d "''$1/lib/coq/${coq-version}/user-contrib"; then - export COQPATH="''${COQPATH}''${COQPATH:+:}''$1/lib/coq/${coq-version}/user-contrib/" - fi - } - - addEnvHooks "$targetOffset" addCoqPath - ''; - - passthru = { - inherit findlib; - emacsBufferSetup = pkgs: '' - ; Propagate coq paths to children - (inherit-local-permanent coq-prog-name "${self}/bin/coqtop") - (inherit-local-permanent coq-dependency-analyzer "${self}/bin/coqdep") - (inherit-local-permanent coq-compiler "${self}/bin/coqc") - ; If the coq-library path was already set, re-set it based on our current coq - (when (fboundp 'get-coq-library-directory) - (inherit-local-permanent coq-library-directory (get-coq-library-directory)) - (coq-prog-args)) - (mapc (lambda (arg) - (when (file-directory-p (concat arg "/lib/coq/${coq-version}/user-contrib")) - (setenv "COQPATH" (concat (getenv "COQPATH") ":" arg "/lib/coq/${coq-version}/user-contrib")))) '(${stdenv.lib.concatStringsSep " " (map (pkg: "\"${pkg}\"") pkgs)})) - ''; - }; - - meta = with stdenv.lib; { - description = "Formal proof management system"; - longDescription = '' - Coq is a formal proof management system. It provides a formal language - to write mathematical definitions, executable algorithms and theorems - together with an environment for semi-interactive development of - machine-checked proofs. - ''; - homepage = http://coq.inria.fr; - license = licenses.lgpl21; - branch = coq-version; - maintainers = with maintainers; [ roconnor thoughtpolice vbgl ]; - platforms = platforms.unix; - }; -}; in self diff --git a/pkgs/applications/science/logic/coq/configure.patch b/pkgs/applications/science/logic/coq/configure.patch deleted file mode 100644 index aa38ce06e92bd21a4dc23d8d78c1a70b80774cde..0000000000000000000000000000000000000000 --- a/pkgs/applications/science/logic/coq/configure.patch +++ /dev/null @@ -1,11 +0,0 @@ -diff -Nuar coq-8.3pl3-orig/configure coq-8.3pl3/configure ---- coq-8.3pl3-orig/configure 2011-12-19 22:57:30.000000000 +0100 -+++ coq-8.3pl3/configure 2012-03-17 16:38:16.000000000 +0100 -@@ -395,7 +395,6 @@ - ocamlyaccexec=$CAMLBIN/ocamlyacc - ocamlmktopexec=$CAMLBIN/ocamlmktop - ocamlmklibexec=$CAMLBIN/ocamlmklib -- camlp4oexec=$CAMLBIN/camlp4o - esac - - if test ! -f "$CAMLC" ; then diff --git a/pkgs/applications/science/logic/coq/default.nix b/pkgs/applications/science/logic/coq/default.nix index 040d722f94107d7d3240d790a069978ad98bc09a..5fab9788a94ae4cd4d6ecd2d3463f54719861d77 100644 --- a/pkgs/applications/science/logic/coq/default.nix +++ b/pkgs/applications/science/logic/coq/default.nix @@ -25,6 +25,7 @@ let "8.8.0" = "13a4fka22hdxsjk11mgjb9ffzplfxyxp1sg5v1c8nk1grxlscgw8"; "8.8.1" = "1hlf58gwazywbmfa48219amid38vqdl94yz21i11b4map6jfwhbk"; "8.8.2" = "1lip3xja924dm6qblisk1bk0x8ai24s5xxqxphbdxj6djglj68fd"; + "8.9+beta1" = "1yxv2klqal3mh6symi3gc6gv3xm684zlld2c0b6ijhjmp865cin8"; }."${version}"; coq-version = builtins.substring 0 3 version; ideFlags = if buildIde then "-lablgtkdir ${ocamlPackages.lablgtk}/lib/ocaml/*/site-lib/lablgtk2 -coqide opt" else ""; diff --git a/pkgs/applications/science/logic/eprover/default.nix b/pkgs/applications/science/logic/eprover/default.nix index 0e978f2d5c9d2f43aea533b8dd3e55cf74f2db19..4d8e7b17b2bc46d47056dee9eb7cb92eda5c9170 100644 --- a/pkgs/applications/science/logic/eprover/default.nix +++ b/pkgs/applications/science/logic/eprover/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { name = "eprover-${version}"; - version = "2.1"; + version = "2.2"; src = fetchurl { url = "https://wwwlehre.dhbw-stuttgart.de/~sschulz/WORK/E_DOWNLOAD/V_${version}/E.tgz"; - sha256 = "1gh99ajmza33f54idhqkdqxp5zh2k06jsf45drihnrzydlqv1n7l"; + sha256 = "08ihpwgkz0l7skr42iw8lm202kqr51i792bs61qsbnk9gsjlab1c"; }; buildInputs = [ which ]; diff --git a/pkgs/applications/science/logic/yices/default.nix b/pkgs/applications/science/logic/yices/default.nix index 3121a83e5b983482a8a8cb88478e8184dac2571a..0ab08db6746585131a512135d3649be13aa538eb 100644 --- a/pkgs/applications/science/logic/yices/default.nix +++ b/pkgs/applications/science/logic/yices/default.nix @@ -2,12 +2,12 @@ stdenv.mkDerivation rec { name = "yices-${version}"; - version = "2.6.0"; + version = "2.6.1"; src = fetchurl { url = "https://github.com/SRI-CSL/yices2/archive/Yices-${version}.tar.gz"; name = "${name}-src.tar.gz"; - sha256 = "10ikq7ib8jhx7hlxfm6mp5qg6r8dflqs8242q5zaicn80qixpm12"; + sha256 = "14xvflv14qn8ssm8rklvckp6l1q94vn49qz2snz73j40nwzshaww"; }; nativeBuildInputs = [ autoreconfHook ]; diff --git a/pkgs/applications/science/logic/z3/default.nix b/pkgs/applications/science/logic/z3/default.nix index 1cbe914779e64d6a516357e54f8f13f026ca5da7..f7d67d82cbc80fdb835173b5a6f4ad2db36a8d47 100644 --- a/pkgs/applications/science/logic/z3/default.nix +++ b/pkgs/applications/science/logic/z3/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { name = "z3-${version}"; - version = "4.7.1"; + version = "4.8.1"; src = fetchFromGitHub { owner = "Z3Prover"; repo = "z3"; - rev = "3b1b82bef05a1b5fd69ece79c80a95fb6d72a990"; - sha256 = "1s850r6qifwl83zzgvrb5l0jigvmymzpv18ph71hg2bcpk7kjw3d"; + rev = name; + sha256 = "1vr57bwx40sd5riijyrhy70i2wnv9xrdihf6y5zdz56yq88rl48f"; }; buildInputs = [ python fixDarwinDylibNames ]; diff --git a/pkgs/applications/science/machine-learning/shogun/default.nix b/pkgs/applications/science/machine-learning/shogun/default.nix index 0ac40b1e7d42aecf90c880337a9523299038c3b9..8de78092bd84fa214953a117d2f2f3a294fae43f 100644 --- a/pkgs/applications/science/machine-learning/shogun/default.nix +++ b/pkgs/applications/science/machine-learning/shogun/default.nix @@ -2,9 +2,9 @@ # data, compression , bzip2, curl, hdf5, json_c, lzma, lzo, protobuf, snappy # maths -, blas, eigen, nlopt, lp_solve, colpack +, openblasCompat, eigen, nlopt, lp_solve, colpack # libraries -, libarchive, liblapack, libxml2 +, libarchive, libxml2 # extra support , pythonSupport ? true, pythonPackages ? null , opencvSupport ? false, opencv ? null @@ -41,8 +41,8 @@ stdenv.mkDerivation rec { CCACHE_DIR=".ccache"; buildInputs = with lib; [ - blas bzip2 ccache cmake colpack curl ctags eigen hdf5 json_c lp_solve lzma lzo - protobuf nlopt snappy swig (libarchive.dev) liblapack libxml2 + openblasCompat bzip2 ccache cmake colpack curl ctags eigen hdf5 json_c lp_solve lzma lzo + protobuf nlopt snappy swig (libarchive.dev) libxml2 ] ++ optionals (pythonSupport) (with pythonPackages; [ python ply numpy ]) ++ optional (opencvSupport) opencv; diff --git a/pkgs/applications/science/math/R/default.nix b/pkgs/applications/science/math/R/default.nix index 913fac6ac1286df351885ab8268a4d60057fa1d2..2fa8f3e5d7be6f63896e8359a1039ad619a4af7b 100644 --- a/pkgs/applications/science/math/R/default.nix +++ b/pkgs/applications/science/math/R/default.nix @@ -4,6 +4,7 @@ , curl, Cocoa, Foundation, libobjc, libcxx, tzdata , withRecommendedPackages ? true , enableStrictBarrier ? false +, javaSupport ? (!stdenv.hostPlatform.isAarch32 && !stdenv.hostPlatform.isAarch64) }: stdenv.mkDerivation rec { @@ -17,9 +18,10 @@ stdenv.mkDerivation rec { buildInputs = [ bzip2 gfortran libX11 libXmu libXt libXt libjpeg libpng libtiff ncurses pango pcre perl readline texLive xz zlib less texinfo graphviz icu - pkgconfig bison imake which jdk openblas curl + pkgconfig bison imake which openblas curl ] ++ stdenv.lib.optionals (!stdenv.isDarwin) [ tcl tk ] - ++ stdenv.lib.optionals stdenv.isDarwin [ Cocoa Foundation libobjc libcxx ]; + ++ stdenv.lib.optionals stdenv.isDarwin [ Cocoa Foundation libobjc libcxx ] + ++ stdenv.lib.optional javaSupport jdk; patches = [ ./no-usr-local-search-paths.patch ]; @@ -47,7 +49,7 @@ stdenv.mkDerivation rec { CC=$(type -p cc) CXX=$(type -p c++) FC="${gfortran}/bin/gfortran" F77="${gfortran}/bin/gfortran" - JAVA_HOME="${jdk}" + ${stdenv.lib.optionalString javaSupport "JAVA_HOME=\"${jdk}\""} RANLIB=$(type -p ranlib) R_SHELL="${stdenv.shell}" '' + stdenv.lib.optionalString stdenv.isDarwin '' diff --git a/pkgs/applications/science/math/calc/default.nix b/pkgs/applications/science/math/calc/default.nix index ff6b2d0ad2d11d4cacd2f0cdcae0340398aa2a4b..efa2b55499abda618d81d88babfb2334148c4f01 100644 --- a/pkgs/applications/science/math/calc/default.nix +++ b/pkgs/applications/science/math/calc/default.nix @@ -3,14 +3,14 @@ stdenv.mkDerivation rec { name = "calc-${version}"; - version = "2.12.6.8"; + version = "2.12.7.1"; src = fetchurl { urls = [ "https://github.com/lcn2/calc/releases/download/${version}/${name}.tar.bz2" "http://www.isthe.com/chongo/src/calc/${name}.tar.bz2" ]; - sha256 = "144am0pra3hh7635fmi7kqynba8z246dx1dzclm9qx965p3xb4hb"; + sha256 = "0k58vv8m26kq74b8p784d749mzir0pi6g48hch1f6680d3fwa7gb"; }; patchPhase = '' diff --git a/pkgs/applications/science/math/colpack/default.nix b/pkgs/applications/science/math/colpack/default.nix index e62df7f11cc7e6f77dba605438b3fbd2ef7e1294..94e0a44226d46be3adba9c5db0fab006babf13a3 100644 --- a/pkgs/applications/science/math/colpack/default.nix +++ b/pkgs/applications/science/math/colpack/default.nix @@ -25,6 +25,7 @@ stdenv.mkDerivation rec { vertex coloring and derivative computation"; homepage = "http://cscapes.cs.purdue.edu/coloringpage/software.htm#functionalities"; license = licenses.lgpl3; + platforms = platforms.linux; maintainers = with maintainers; [ edwtjo ]; }; diff --git a/pkgs/applications/science/math/giac/default.nix b/pkgs/applications/science/math/giac/default.nix index 6a0b686602ff9c590dd83f44810377d23ce4e8c0..2823165d022604c1e60d54919c3245f436e161af 100644 --- a/pkgs/applications/science/math/giac/default.nix +++ b/pkgs/applications/science/math/giac/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchurl, fetchpatch, texlive, bison, flex, liblapackWithoutAtlas +{ stdenv, fetchurl, fetchpatch, texlive, bison, flex, liblapack , gmp, mpfr, pari, ntl, gsl, blas, mpfi , readline, gettext, libpng, libao, gfortran, perl , enableGUI ? false, libGLU_combined ? null, xorg ? null, fltk ? null @@ -42,7 +42,7 @@ stdenv.mkDerivation rec { # gfortran.cc default output contains static libraries compiled without -fPIC # we want libgfortran.so.3 instead (stdenv.lib.getLib gfortran.cc) - liblapackWithoutAtlas + liblapack ] ++ stdenv.lib.optionals enableGUI [ libGLU_combined fltk xorg.libX11 ]; diff --git a/pkgs/applications/science/math/nasc/default.nix b/pkgs/applications/science/math/nasc/default.nix index cac403b131b8f71fa898f936780f72bffc1128a2..73fa2a5e678c6c6a0db151e445ca9ac4cf3a07c0 100644 --- a/pkgs/applications/science/math/nasc/default.nix +++ b/pkgs/applications/science/math/nasc/default.nix @@ -6,50 +6,43 @@ , granite , gnome3 , cmake -, ninja -, vala +, vala_0_40 , libqalculate , gobjectIntrospection , wrapGAppsHook }: stdenv.mkDerivation rec { name = "nasc-${version}"; - version = "0.4.7"; + version = "0.5.1"; src = fetchFromGitHub { owner = "parnold-x"; repo = "nasc"; rev = version; - sha256 = "0p74953pdgsijvqj3msssqiwm6sc1hzp68dlmjamqrqirwgqv5aa"; + sha256 = "13y5fnm7g3xgdxmdydlgly73nigh8maqbf9d6c9bpyzxkxq1csy5"; }; - patches = [ - # Install libqalculatenasc.so - (fetchpatch { - url = https://github.com/parnold-x/nasc/commit/93a799f9afb3e32f3f1a54e056b59570aae2e437.patch; - sha256 = "1m32w2zaswzxnzbr7p3lf8s6fac4mjvfhm8v9k59b4jyzmvrl631"; - }) - (fetchpatch { - url = https://github.com/parnold-x/nasc/commit/570b49169326de154af2cf43c5f12268fff1dc6d.patch; - sha256 = "1y3w6rxn0453iscx2xg427wy1bd5kv4z1c41hhbjmg614ycp6bka"; - }) - ]; + postPatch = '' + # libqalculatenasc.so is not installed, and nasc fails to start + substituteInPlace libqalculatenasc/CMakeLists.txt --replace SHARED STATIC + ''; nativeBuildInputs = [ pkgconfig wrapGAppsHook - vala + vala_0_40 # should be `elementary.vala` when elementary attribute set is merged cmake - ninja gobjectIntrospection # for setup-hook ]; + buildInputs = [ - libqalculate - gtk3 - granite + gnome3.defaultIconTheme # should be `elementary.defaultIconTheme`when elementary attribute set is merged + gnome3.gtksourceview gnome3.libgee gnome3.libsoup - gnome3.gtksourceview + granite + gtk3 + libqalculate ]; meta = with stdenv.lib; { diff --git a/pkgs/applications/science/math/qalculate-gtk/default.nix b/pkgs/applications/science/math/qalculate-gtk/default.nix index 59dbfdb509dc641b4a54e1fec21bec9289a93e4b..7cd22f22a4e7f16e533815d8d80e8943a2b62b3d 100644 --- a/pkgs/applications/science/math/qalculate-gtk/default.nix +++ b/pkgs/applications/science/math/qalculate-gtk/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { name = "qalculate-gtk-${version}"; - version = "2.6.2"; + version = "2.8.1"; src = fetchFromGitHub { owner = "qalculate"; repo = "qalculate-gtk"; rev = "v${version}"; - sha256 = "1yzw6avhka7bbi071z9d8cipcghyjq2bg9x3arv1cf395xlnrmb9"; + sha256 = "029yq9db2rm4fy83c11aynxjsd6vvi7ffamaf9zvkkamqqj1sjlf"; }; patchPhase = '' diff --git a/pkgs/applications/science/math/sage/sage-src.nix b/pkgs/applications/science/math/sage/sage-src.nix index f631fe38a5b0686054cf907439612f9f617b86f6..b32e063f39dc0b96c1fdbc0637554eaa7323b68d 100644 --- a/pkgs/applications/science/math/sage/sage-src.nix +++ b/pkgs/applications/science/math/sage/sage-src.nix @@ -39,7 +39,19 @@ stdenv.mkDerivation rec { ./patches/Only-test-py2-py3-optional-tests-when-all-of-sage-is.patch ]; - packageUpgradePatches = [ + packageUpgradePatches = let + # fetch a diff between base and rev on sage's git server + # used to fetch trac tickets by setting the base to the release and the + # revision to the last commit that should be included + fetchSageDiff = { base, rev, ...}@args: ( + fetchpatch ({ + url = "https://git.sagemath.org/sage.git/patch?id2=${base}&id=${rev}"; + # We don't care about sage's own build system (which builds all its dependencies). + # Exclude build system changes to avoid conflicts. + excludes = [ "build/*" ]; + } // builtins.removeAttrs args [ "rev" "base" ]) + ); + in [ # New glpk version has new warnings, filter those out until upstream sage has found a solution # https://trac.sagemath.org/ticket/24824 ./patches/pari-stackwarn.patch # not actually necessary since tha pari upgrade, but necessary for the glpk patch to apply @@ -65,6 +77,21 @@ stdenv.mkDerivation rec { url = "https://git.sagemath.org/sage.git/patch/?id=30cc778d46579bd0c7537ed33e8d7a4f40fd5c31"; sha256 = "13vc2q799dh745sm59xjjabllfj0sfjzcacf8k59kwj04x755d30"; }) + + # https://trac.sagemath.org/ticket/26326 + # needs to be split because there is a merge commit in between + (fetchSageDiff { + name = "networkx-2.2-1.patch"; + base = "8.4"; + rev = "68f5ad068184745b38ba6716bf967c8c956c52c5"; + sha256 = "112b5ywdqgyzgvql2jj5ss8la9i8rgnrzs8vigsfzg4shrcgh9p6"; + }) + (fetchSageDiff { + name = "networkx-2.2-2.patch"; + base = "626485bbe5f33bf143d6dfba4de9c242f757f59b~1"; + rev = "db10d327ade93711da735a599a67580524e6f7b4"; + sha256 = "09v87id25fa5r9snfn4mv79syhc77jxfawj5aizmdpwdmpgxjk1f"; + }) ]; patches = nixPatches ++ packageUpgradePatches ++ [ diff --git a/pkgs/applications/science/misc/simgrid/default.nix b/pkgs/applications/science/misc/simgrid/default.nix index b6cd8c294c1b12282eb4214cefed6b7d7b0dbcdf..258073e4080b04c9436033a8e49f9fe000ccc8f7 100644 --- a/pkgs/applications/science/misc/simgrid/default.nix +++ b/pkgs/applications/science/misc/simgrid/default.nix @@ -18,13 +18,13 @@ in stdenv.mkDerivation rec { name = "simgrid-${version}"; - version = "3.20"; + version = "3.21"; src = fetchFromGitHub { owner = "simgrid"; repo = "simgrid"; - rev = "v${version}"; - sha256 = "0xb20qhvsah2dz2hvn850i3w9a5ghsbcx8vka2ap6xsdkxf593gy"; + rev = "v${replaceChars ["."] ["_"] version}"; + sha256 = "1v0dwlww2wl56ms8lvg5zwffzbmz3sjzpkqc73f714mrc9g02bxs"; }; nativeBuildInputs = [ cmake perl python3 boost valgrind ] @@ -107,6 +107,6 @@ stdenv.mkDerivation rec { homepage = http://simgrid.gforge.inria.fr/; license = licenses.lgpl2Plus; maintainers = with maintainers; [ mickours ]; - platforms = platforms.x86_64; + platforms = ["x86_64-linux"]; }; } diff --git a/pkgs/applications/science/molecular-dynamics/dl-poly-classic/default.nix b/pkgs/applications/science/molecular-dynamics/dl-poly-classic/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..1986f3b75ec16e347127dff33eba117cab51e5ac --- /dev/null +++ b/pkgs/applications/science/molecular-dynamics/dl-poly-classic/default.nix @@ -0,0 +1,37 @@ +{ stdenv, fetchurl +, gfortran, mpi +}: + +stdenv.mkDerivation rec { + version = "1.10"; + name = "DL_POLY_Classic-${version}"; + + src = fetchurl { + url = "https://ccpforge.cse.rl.ac.uk/gf/download/frsrelease/574/8924/dl_class_1.10.tar.gz"; + sha256 = "1r76zvln3bwycxlmqday0sqzv5j260y7mdh66as2aqny6jzd5ld7"; + }; + + buildInputs = [ mpi gfortran ]; + + configurePhase = '' + cd source + cp -v ../build/MakePAR Makefile + ''; + + buildPhase = '' + make dlpoly + ''; + + installPhase = '' + mkdir -p $out/bin + cp -v ../execute/DLPOLY.X $out/bin + ''; + + meta = with stdenv.lib; { + homepage = https://www.ccp5.ac.uk/DL_POLY_C; + description = "DL_POLY Classic is a general purpose molecular dynamics simulation package"; + license = licenses.bsdOriginal; + platforms = [ "x86_64-linux" ]; + maintainers = [ maintainers.costrouc ]; + }; +} diff --git a/pkgs/applications/science/molecular-dynamics/lammps/default.nix b/pkgs/applications/science/molecular-dynamics/lammps/default.nix index 03e37ad9d93512230ce495d1a9770c6b2409ce25..f4491053e4c8e666f873a5fc5fb37f73c1908303 100644 --- a/pkgs/applications/science/molecular-dynamics/lammps/default.nix +++ b/pkgs/applications/science/molecular-dynamics/lammps/default.nix @@ -1,63 +1,56 @@ -{ lib -, bash -, stdenv -, writeText -, fetchFromGitHub -, libpng -, gzip -, fftw -, openblas -, mpiSupport ? false, mpi ? null +{ stdenv, fetchFromGitHub +, libpng, gzip, fftw, openblas +, mpi ? null }: - -assert mpiSupport -> mpi != null; - +let packages = [ + "asphere" "body" "class2" "colloid" "compress" "coreshell" + "dipole" "granular" "kspace" "manybody" "mc" "misc" "molecule" + "opt" "peri" "qeq" "replica" "rigid" "shock" "snap" "srd" "user-reaxc" + ]; + lammps_includes = "-DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64"; + withMPI = (mpi != null); +in stdenv.mkDerivation rec { # LAMMPS has weird versioning converted to ISO 8601 format - version = "patch_2Aug2018"; + version = "stable_22Aug2018"; name = "lammps-${version}"; - lammps_packages = "asphere body class2 colloid compress coreshell dipole granular kspace manybody mc misc molecule opt peri qeq replica rigid shock snap srd user-reaxc"; - lammps_includes = "-DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64"; - src = fetchFromGitHub { owner = "lammps"; repo = "lammps"; rev = "${version}"; - sha256 = "1ph9pr7s11wgmspmnhxa55bh1pq2cyl8iimfi62lbpbpl9pr1ilc"; + sha256 = "1dlifm9wm1jcw2zwal3fnzzl41ng08c7v48w6hx2mz84zljg1nsj"; }; passthru = { inherit mpi; + inherit packages; }; - buildInputs = [ fftw libpng openblas gzip bash ] - ++ (stdenv.lib.optionals mpiSupport [ mpi ]); + buildInputs = [ fftw libpng openblas gzip ] + ++ (stdenv.lib.optionals withMPI [ mpi ]); + + configurePhase = '' + cd src + for pack in ${stdenv.lib.concatStringsSep " " packages}; do make "yes-$pack" SHELL=$SHELL; done + ''; # Must do manual build due to LAMMPS requiring a seperate build for - # the libraries and executable - builder = writeText "builder.sh" '' - source $stdenv/setup + # the libraries and executable. Also non-typical make script + buildPhase = '' + make mode=exe ${if withMPI then "mpi" else "serial"} SHELL=$SHELL LMP_INC="${lammps_includes}" FFT_PATH=-DFFT_FFTW3 FFT_LIB=-lfftw3 JPG_LIB=-lpng + make mode=shlib ${if withMPI then "mpi" else "serial"} SHELL=$SHELL LMP_INC="${lammps_includes}" FFT_PATH=-DFFT_FFTW3 FFT_LIB=-lfftw3 JPG_LIB=-lpng + ''; - mkdir lammps - cp -r $src/lib $src/src lammps - chmod -R 755 lammps/src/ - cd lammps/src - for pack in ${lammps_packages}; do make "yes-$pack" SHELL=$SHELL; done - make mode=exe ${if mpiSupport then "mpi" else "serial"} SHELL=$SHELL LMP_INC="${lammps_includes}" FFT_PATH=-DFFT_FFTW3 FFT_LIB=-lfftw3 JPG_LIB=-lpng - make mode=shlib ${if mpiSupport then "mpi" else "serial"} SHELL=$SHELL LMP_INC="${lammps_includes}" FFT_PATH=-DFFT_FFTW3 FFT_LIB=-lfftw3 JPG_LIB=-lpng + installPhase = '' + mkdir -p $out/bin $out/include $out/lib - mkdir -p $out/bin cp -v lmp_* $out/bin/ - - mkdir -p $out/include cp -v *.h $out/include/ - - mkdir -p $out/lib cp -v liblammps* $out/lib/ ''; - meta = { + meta = with stdenv.lib; { description = "Classical Molecular Dynamics simulation code"; longDescription = '' LAMMPS is a classical molecular dynamics simulation code designed to @@ -67,8 +60,8 @@ stdenv.mkDerivation rec { under the terms of the GNU Public License (GPL). ''; homepage = http://lammps.sandia.gov; - license = stdenv.lib.licenses.gpl2; - platforms = stdenv.lib.platforms.linux; - maintainers = with lib.maintainers; [ costrouc ]; + license = licenses.gpl2; + platforms = platforms.linux; + maintainers = [ maintainers.costrouc ]; }; } diff --git a/pkgs/applications/science/physics/xfitter/default.nix b/pkgs/applications/science/physics/xfitter/default.nix index a6ec9960045d9c3a4f47218a85d74839205302d6..833370f81443e356135bda92b3754b64283d58b7 100644 --- a/pkgs/applications/science/physics/xfitter/default.nix +++ b/pkgs/applications/science/physics/xfitter/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchurl, apfel, apfelgrid, applgrid, blas, gfortran, lhapdf, liblapackWithoutAtlas, libyaml, lynx, mela, root5, qcdnum, which }: +{ stdenv, fetchurl, apfel, apfelgrid, applgrid, blas, gfortran, lhapdf, liblapack, libyaml, lynx, mela, root5, qcdnum, which }: stdenv.mkDerivation rec { name = "xfitter-${version}"; @@ -34,7 +34,7 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ gfortran which ]; buildInputs = - [ apfel apfelgrid applgrid blas lhapdf liblapackWithoutAtlas mela root5 qcdnum ] + [ apfel apfelgrid applgrid blas lhapdf liblapack mela root5 qcdnum ] # pdf2yaml requires fmemopen and open_memstream which are not readily available on Darwin ++ stdenv.lib.optional (!stdenv.isDarwin) libyaml ; diff --git a/pkgs/applications/version-management/git-and-tools/git-big-picture/default.nix b/pkgs/applications/version-management/git-and-tools/git-big-picture/default.nix index 6918f048eae35a909ddcf4eb13fabb94fac705cf..7a47ed9a992d5b205f55e75f3e86bac0c4c3f3e0 100644 --- a/pkgs/applications/version-management/git-and-tools/git-big-picture/default.nix +++ b/pkgs/applications/version-management/git-and-tools/git-big-picture/default.nix @@ -2,7 +2,7 @@ python2Packages.buildPythonApplication rec { pname = "git-big-picture"; - version = "0.9.0"; + version = "0.10.1"; name = "${pname}-${version}"; @@ -10,7 +10,7 @@ python2Packages.buildPythonApplication rec { owner = "esc"; repo = pname; rev = "v${version}"; - sha256 = "1h283gzs4nx8lrarmr454zza52cilmnbdrqn1n33v3cn1rayl3c9"; + sha256 = "0b0zdq7d7k7f6p3wwc799347fraphbr20rxd1ysnc4xi1cj4wpmi"; }; buildInputs = [ git graphviz ]; @@ -21,7 +21,7 @@ python2Packages.buildPythonApplication rec { ''; meta = { - description = "Tool for visualization of Git repositories."; + description = "Tool for visualization of Git repositories"; homepage = https://github.com/esc/git-big-picture; license = stdenv.lib.licenses.gpl3; platforms = stdenv.lib.platforms.linux; diff --git a/pkgs/applications/version-management/git-and-tools/grv/default.nix b/pkgs/applications/version-management/git-and-tools/grv/default.nix index 962ddf98d6ce7a5a479df8b286426922d4c12df7..dd080799557bafe2122c81d2a1797b8ba3835d78 100644 --- a/pkgs/applications/version-management/git-and-tools/grv/default.nix +++ b/pkgs/applications/version-management/git-and-tools/grv/default.nix @@ -1,6 +1,6 @@ { stdenv, buildGo19Package, fetchFromGitHub, curl, libgit2_0_27, ncurses, pkgconfig, readline }: let - version = "0.2.0"; + version = "0.3.0"; in buildGo19Package { name = "grv-${version}"; @@ -14,10 +14,14 @@ buildGo19Package { owner = "rgburke"; repo = "grv"; rev = "v${version}"; - sha256 = "0hlqw6b51jglqzzjgazncckpgarp25ghshl0lxv1mff80jg8wd1a"; + sha256 = "00v502mwnpv09l7fsbq3s72i5fz5dxbildwxgw0r8zzf6d54xrgl"; fetchSubmodules = true; }; + postPatch = '' + rm util/update_latest_release.go + ''; + buildFlagsArray = [ "-ldflags=" "-X main.version=${version}" ]; meta = with stdenv.lib; { diff --git a/pkgs/applications/version-management/git-and-tools/hub/default.nix b/pkgs/applications/version-management/git-and-tools/hub/default.nix index 113d7f78b905c75429b5256d6deae84e1b6efa97..e01101c6a66289384eca528e911338b3b60c2bc7 100644 --- a/pkgs/applications/version-management/git-and-tools/hub/default.nix +++ b/pkgs/applications/version-management/git-and-tools/hub/default.nix @@ -2,7 +2,7 @@ buildGoPackage rec { name = "hub-${version}"; - version = "2.5.1"; + version = "2.6.0"; goPackagePath = "github.com/github/hub"; @@ -10,10 +10,11 @@ buildGoPackage rec { owner = "github"; repo = "hub"; rev = "v${version}"; - sha256 = "0a5i351v998vdwf883qhh39c15x56db01fr9hscz4ha7r9550pqg"; + sha256 = "0hxmbpyv2yjxg4v3z50x5ikgcz7mgv5prya8jcpi277vq2s0wwa1"; }; - buildInputs = [ groff ronn ruby utillinux ] ++ + nativeBuildInputs = [ groff ronn utillinux ]; + buildInputs = [ ruby ] ++ stdenv.lib.optional stdenv.isDarwin Security; postPatch = '' @@ -29,7 +30,7 @@ buildGoPackage rec { install -D etc/hub.fish_completion "$bin/share/fish/vendor_completions.d/hub.fish" make man-pages - cp -r share/man $bin/share/man + cp -vr --parents share/man/man[1-9]/*.[1-9] $bin/ ''; meta = with stdenv.lib; { diff --git a/pkgs/applications/version-management/gitea/default.nix b/pkgs/applications/version-management/gitea/default.nix index a25492e4546cd519be2e0525e8d1505fc932c594..8ee43dc16c1db3527c00155fd5acdd0773093fd0 100644 --- a/pkgs/applications/version-management/gitea/default.nix +++ b/pkgs/applications/version-management/gitea/default.nix @@ -7,13 +7,13 @@ with stdenv.lib; buildGoPackage rec { name = "gitea-${version}"; - version = "1.5.2"; + version = "1.5.3"; src = fetchFromGitHub { owner = "go-gitea"; repo = "gitea"; rev = "v${version}"; - sha256 = "168pbndlh7c148p8wzkd39kd7idiba9zw7v0alp9zqcqzzayaydj"; + sha256 = "1f8cbsd3kn4v2a6c57rwh9slgvss7gnxs96yhcy2ddwyycf6i04d"; # Required to generate the same checksum on MacOS due to unicode encoding differences # More information: https://github.com/NixOS/nixpkgs/pull/48128 extraPostFetch = '' diff --git a/pkgs/applications/version-management/gitlab/default.nix b/pkgs/applications/version-management/gitlab/default.nix index ace0df5efdfd3ccbf6b0ff3186319faf8ad1a453..c1c4d20feacb935abe96062248b8bd4c95cb55cb 100644 --- a/pkgs/applications/version-management/gitlab/default.nix +++ b/pkgs/applications/version-management/gitlab/default.nix @@ -11,29 +11,29 @@ let groups = [ "default" "unicorn" "ed25519" "metrics" ]; }; - version = "11.4.3"; + version = "11.4.4"; sources = if gitlabEnterprise then { gitlabDeb = fetchurl { url = "https://packages.gitlab.com/gitlab/gitlab-ee/packages/debian/stretch/gitlab-ee_${version}-ee.0_amd64.deb/download.deb"; - sha256 = "1cw75qj508z6n00rqgqjzdm2013kyb7c57cypmq0m08nc6f3jspz"; + sha256 = "15lpcdjcw6lpmzlhqnpd6pgaxh7wvx2mldjd1vqr414r4bcnhgy4"; }; gitlab = fetchFromGitLab { owner = "gitlab-org"; repo = "gitlab-ee"; rev = "v${version}-ee"; - sha256 = "1vqc77whpbsifbm9vgcmpxnw13v8jz1s9q04i8jfv99c59fjlids"; + sha256 = "046hchr7q4jnx3j4yxg3rdixfzlva35al3ci26pf9vxrbbl5y8cg"; }; } else { gitlabDeb = fetchurl { url = "https://packages.gitlab.com/gitlab/gitlab-ce/packages/debian/stretch/gitlab-ce_${version}-ce.0_amd64.deb/download.deb"; - sha256 = "0vk03k42pp92h520wnynl9czcigjhj9m7y68z1x0gwqr9m61r7zm"; + sha256 = "02p7azyjgb984bk491q6f4zk1mikbcd38rif08kl07bjjzzkir81"; }; gitlab = fetchFromGitLab { owner = "gitlab-org"; repo = "gitlab-ce"; rev = "v${version}"; - sha256 = "1zvjz2gv2vwqqjz52zcvi0ap3d8rdbpgsqk9wv80hqq4v37a5gfx"; + sha256 = "1hq9iyp0xrxwmncn61ja3pdj9h2hmdy1l63d1ic3r1dyacybaf2g"; }; }; @@ -63,17 +63,7 @@ stdenv.mkDerivation rec { --replace "ps -U" "${procps}/bin/ps -U" sed -i '/ask_to_continue/d' lib/tasks/gitlab/two_factor.rake - - # required for some gems: - cat > config/database.yml < - database: gitlab - host: <%= ENV["GITLAB_DATABASE_HOST"] || "127.0.0.1" %> - password: <%= ENV["GITLAB_DATABASE_PASSWORD"] || "blerg" %> - username: gitlab - encoding: utf8 - EOF + sed -ri -e '/log_level/a config.logger = Logger.new(STDERR)' config/environments/production.rb ''; buildPhase = '' diff --git a/pkgs/applications/version-management/gitlab/rubyEnv-ce/Gemfile.lock b/pkgs/applications/version-management/gitlab/rubyEnv-ce/Gemfile.lock index 9837a195d8c7edf46022248dafae9e6ce78ec7da..e215f12bbe6e63b1947f0d7e9b9e5200ba50c0ca 100644 --- a/pkgs/applications/version-management/gitlab/rubyEnv-ce/Gemfile.lock +++ b/pkgs/applications/version-management/gitlab/rubyEnv-ce/Gemfile.lock @@ -630,7 +630,7 @@ GEM pry (>= 0.10.4) public_suffix (3.0.3) pyu-ruby-sasl (0.0.3.3) - rack (1.6.10) + rack (1.6.11) rack-accept (0.4.5) rack (>= 0.4) rack-attack (4.4.1) diff --git a/pkgs/applications/version-management/gitlab/rubyEnv-ce/gemset.nix b/pkgs/applications/version-management/gitlab/rubyEnv-ce/gemset.nix index ee262b6b5d9649f60f2647aeecd736ca0862a98e..dfbd535aaa820481bbe89d15ecd29b49a8a1526f 100644 --- a/pkgs/applications/version-management/gitlab/rubyEnv-ce/gemset.nix +++ b/pkgs/applications/version-management/gitlab/rubyEnv-ce/gemset.nix @@ -2320,10 +2320,10 @@ rack = { source = { remotes = ["https://rubygems.org"]; - sha256 = "0in0amn0kwvzmi8h5zg6ijrx5wpsf8h96zrfmnk1kwh2ql4sxs2q"; + sha256 = "1g9926ln2lw12lfxm4ylq1h6nl0rafl10za3xvjzc87qvnqic87f"; type = "gem"; }; - version = "1.6.10"; + version = "1.6.11"; }; rack-accept = { dependencies = ["rack"]; diff --git a/pkgs/applications/version-management/gitlab/rubyEnv-ee/Gemfile.lock b/pkgs/applications/version-management/gitlab/rubyEnv-ee/Gemfile.lock index 4355b3ae2717f99a2cebee2cd20b9d3ec2aa9748..28018c6c5c2279ee07a1e04df04516f60e63987f 100644 --- a/pkgs/applications/version-management/gitlab/rubyEnv-ee/Gemfile.lock +++ b/pkgs/applications/version-management/gitlab/rubyEnv-ee/Gemfile.lock @@ -659,7 +659,7 @@ GEM pry (>= 0.10.4) public_suffix (3.0.3) pyu-ruby-sasl (0.0.3.3) - rack (1.6.10) + rack (1.6.11) rack-accept (0.4.5) rack (>= 0.4) rack-attack (4.4.1) diff --git a/pkgs/applications/version-management/gitlab/rubyEnv-ee/gemset.nix b/pkgs/applications/version-management/gitlab/rubyEnv-ee/gemset.nix index 03efc4e9600f5a38e88376e24a9c7b89693c28f5..32fc41235f433de5c040e824c47bf0a804a2467a 100644 --- a/pkgs/applications/version-management/gitlab/rubyEnv-ee/gemset.nix +++ b/pkgs/applications/version-management/gitlab/rubyEnv-ee/gemset.nix @@ -2441,10 +2441,10 @@ rack = { source = { remotes = ["https://rubygems.org"]; - sha256 = "0in0amn0kwvzmi8h5zg6ijrx5wpsf8h96zrfmnk1kwh2ql4sxs2q"; + sha256 = "1g9926ln2lw12lfxm4ylq1h6nl0rafl10za3xvjzc87qvnqic87f"; type = "gem"; }; - version = "1.6.10"; + version = "1.6.11"; }; rack-accept = { dependencies = ["rack"]; diff --git a/pkgs/applications/version-management/mercurial/default.nix b/pkgs/applications/version-management/mercurial/default.nix index 5464f605cbdbdfd3a05961ca8083aa483226e0e3..35d374866c8adc5c1de070db7fe0e075db810527 100644 --- a/pkgs/applications/version-management/mercurial/default.nix +++ b/pkgs/applications/version-management/mercurial/default.nix @@ -4,7 +4,7 @@ let # if you bump version, update pkgs.tortoisehg too or ping maintainer - version = "4.7.2"; + version = "4.8"; name = "mercurial-${version}"; inherit (python2Packages) docutils hg-git dulwich python; in python2Packages.buildPythonApplication { @@ -13,7 +13,7 @@ in python2Packages.buildPythonApplication { src = fetchurl { url = "https://mercurial-scm.org/release/${name}.tar.gz"; - sha256 = "1yq9r8s9jzj8hk2yizjk25s4w16yx9b8mbdj6wp8ld7j2r15kw4p"; + sha256 = "00rzjbf2blxkc0qwd9mdzx5fnzgpp4jxzijq6wgsjgmqscx40sy5"; }; inherit python; # pass it so that the same version can be used in hg2git diff --git a/pkgs/applications/version-management/redmine/Gemfile.lock b/pkgs/applications/version-management/redmine/Gemfile.lock index 54eed51cd868cdfcf221a82b5bed9a52c7aa8baf..c8ef35d194344485c077b403ea86a819e6901f51 100644 --- a/pkgs/applications/version-management/redmine/Gemfile.lock +++ b/pkgs/applications/version-management/redmine/Gemfile.lock @@ -89,7 +89,7 @@ GEM protected_attributes (1.1.4) activemodel (>= 4.0.1, < 5.0) public_suffix (3.0.3) - rack (1.6.10) + rack (1.6.11) rack-openid (1.4.2) rack (>= 1.1.0) ruby-openid (>= 2.1.8) @@ -201,4 +201,4 @@ DEPENDENCIES yard BUNDLED WITH - 1.16.3 + 1.16.4 diff --git a/pkgs/applications/version-management/redmine/gemset.nix b/pkgs/applications/version-management/redmine/gemset.nix index fe56298056b1133c0c126db5325b8381d4867110..c0b8cb8d6e2de47b3f19e3e8302c70769eeb0626 100644 --- a/pkgs/applications/version-management/redmine/gemset.nix +++ b/pkgs/applications/version-management/redmine/gemset.nix @@ -350,10 +350,10 @@ rack = { source = { remotes = ["https://rubygems.org"]; - sha256 = "0in0amn0kwvzmi8h5zg6ijrx5wpsf8h96zrfmnk1kwh2ql4sxs2q"; + sha256 = "1g9926ln2lw12lfxm4ylq1h6nl0rafl10za3xvjzc87qvnqic87f"; type = "gem"; }; - version = "1.6.10"; + version = "1.6.11"; }; rack-openid = { dependencies = ["rack" "ruby-openid"]; diff --git a/pkgs/applications/version-management/smartgithg/default.nix b/pkgs/applications/version-management/smartgithg/default.nix index 106b66bcfecbb3fb89749942aab3865074228a71..d6ae37c3f7faad926a134ca0d821cbb1deec23ab 100644 --- a/pkgs/applications/version-management/smartgithg/default.nix +++ b/pkgs/applications/version-management/smartgithg/default.nix @@ -7,11 +7,11 @@ stdenv.mkDerivation rec { name = "smartgithg-${version}"; - version = "18_1_4"; + version = "18_1_5"; src = fetchurl { url = "https://www.syntevo.com/downloads/smartgit/smartgit-linux-${version}.tar.gz"; - sha256 = "18gyfcs5g7xq8fqnn1zjzx350jaynrniain0giay8sxych12p4cm"; + sha256 = "0f2aj3259jvn7n0x6m8sbwliikln9lqffd00jg75dblhxwl8adg3"; }; nativeBuildInputs = [ makeWrapper ]; diff --git a/pkgs/applications/version-management/subversion/default.nix b/pkgs/applications/version-management/subversion/default.nix index 2a77e1395b46b726c33a6c0dd9f53460fd759b31..dfcc28142ac79a4e9982fe5af377da41f70831ed 100644 --- a/pkgs/applications/version-management/subversion/default.nix +++ b/pkgs/applications/version-management/subversion/default.nix @@ -116,8 +116,8 @@ in { }; subversion19 = common { - version = "1.9.7"; - sha256 = "08qn94zaqcclam2spb4h742lvhxw8w5bnrlya0fm0bp17hriicf3"; + version = "1.9.9"; + sha256 = "1ll13ychbkp367c7zsrrpda5nygkryma5k18qfr8wbaq7dbvxzcd"; }; subversion_1_10 = common { @@ -125,4 +125,10 @@ in { sha256 = "1z6r3n91a4znsh68rl3jisfr7k4faymhbpalmmvsmvsap34al3cz"; extraBuildInputs = [ lz4 utf8proc ]; }; + + subversion_1_11 = common { + version = "1.11.0"; + sha256 = "0miyz3xsxxp56iczxv6yqd8p06av3vxpb5nasyg2xb3ln1247i47"; + extraBuildInputs = [ lz4 utf8proc ]; + }; } diff --git a/pkgs/applications/video/handbrake/default.nix b/pkgs/applications/video/handbrake/default.nix index 2f27eb83884182ba9a887e09c770205b7831f7ce..abd4973bbdf297fd5a316cdfbe9de8738247e360 100644 --- a/pkgs/applications/video/handbrake/default.nix +++ b/pkgs/applications/video/handbrake/default.nix @@ -20,21 +20,34 @@ stdenv.mkDerivation rec { # TODO: Release 1.2.0 would switch LibAV to FFmpeg. - version = "1.1.0"; + version = "1.1.2"; name = "handbrake-${version}"; src = fetchurl { url = ''https://download2.handbrake.fr/${version}/HandBrake-${version}-source.tar.bz2''; - sha256 = "1nj0ihflisxcfkmsk7fm3b5cn7cpnpg66dk2lkp2ip6qidppqbm0"; + sha256 = "0bny0hwlr55g2c69rsamv0xvwmfh1s4a582b9vq20xv5ly84m6ms"; }; patched_libav_12 = libav_12.overrideAttrs (super: { - # NOTE: 2018-04-26: HandBrake compilation (1.1.0) requires a patch of LibAV (12.3) from HandBrake team. This patch not went LibAV upstream. patches = (super.patches or []) ++ [( + # NOTE: 2018-04-26: HandBrake compilation (1.1.0) requires + # a patch of LibAV (12.3) from HandBrake team. This patch + # not went LibAV upstream. fetchurl { url = ''https://raw.githubusercontent.com/HandBrake/HandBrake/9e1f245708a157231c427c0ef9b91729d59a30e1/contrib/ffmpeg/A21-mp4-sdtp.patch''; sha256 = "14grzyvb1qbb90k31ibabnwmwnrc48ml6h2z0rjamdv83q45jq4g"; }) + # NOTE: 2018-11-11: Transcoding to MP4 can fail with: + # + # Tag avc1/0x31637661 incompatible with output codec id '28' + # muxavformat: avformat_write_header failed! + # + # Fix using Handbrake patch that is not upstream in libav. + ( + fetchurl { + url = ''https://raw.githubusercontent.com/HandBrake/HandBrake/df6c26fa261423237ee2bec0bf784c32cbfda3fa/contrib/ffmpeg/A20-avc3-hvc1-override.patch''; + sha256 = "1vijd7bmkzp3sb6zhpcpdni8fz4h13wgglnml6cz9f44j41w2c3v"; + }) ]; }); diff --git a/pkgs/applications/video/makemkv/default.nix b/pkgs/applications/video/makemkv/default.nix index c55f4bc5fb2a95ba229f5956911a28a78bc4ce30..b25560c50c90f233db46435611f04428253d45d4 100644 --- a/pkgs/applications/video/makemkv/default.nix +++ b/pkgs/applications/video/makemkv/default.nix @@ -4,17 +4,17 @@ stdenv.mkDerivation rec { name = "makemkv-${ver}"; - ver = "1.12.3"; + ver = "1.14.0"; builder = ./builder.sh; src_bin = fetchurl { url = "http://www.makemkv.com/download/makemkv-bin-${ver}.tar.gz"; - sha256 = "0rggpzp7gp4y6gxnhl4saxpdwnaivwkildpwbjjh7zvmgka3749a"; + sha256 = "1xm5pww6jf3m704y7d7nc2ni2a6ygxwb2c665agg2i059sppwz1f"; }; src_oss = fetchurl { url = "http://www.makemkv.com/download/makemkv-oss-${ver}.tar.gz"; - sha256 = "1w0l2rq9gyzli5ilw82v27d8v7fmchc1wdzcq06q1bsm9wmnbx1r"; + sha256 = "1ihma2nv7zgqx1psgj3bdz723h94f4vk8mbahxl1v4v2rn9kg25z"; }; nativeBuildInputs = [ pkgconfig ]; @@ -36,6 +36,7 @@ stdenv.mkDerivation rec { ''; license = licenses.unfree; homepage = http://makemkv.com; + platforms = [ "x86_64-linux" ]; maintainers = [ maintainers.titanous ]; }; } diff --git a/pkgs/applications/video/qgifer/default.nix b/pkgs/applications/video/qgifer/default.nix deleted file mode 100644 index 8185e15dcc8b3d3506421dc37dfba6f4a61d86fe..0000000000000000000000000000000000000000 --- a/pkgs/applications/video/qgifer/default.nix +++ /dev/null @@ -1,25 +0,0 @@ -{ stdenv, fetchsvn, cmake, opencv, qt4, giflib }: - -stdenv.mkDerivation rec { - name = "qgifer-${version}"; - version = "0.2.1"; - - src = fetchsvn { - url = "https://svn.code.sf.net/p/qgifer/code/tags/${name}"; - sha256 = "0fv40n58xjwfr06ix9ga79hs527rrzfaq1sll3n2xxchpgf3wf4f"; - }; - - postPatch = '' - substituteInPlace CMakeLists.txt --replace "SET(CMAKE_INSTALL_PREFIX" "#" - ''; - - buildInputs = [ cmake opencv qt4 giflib ]; - - meta = with stdenv.lib; { - description = "Video-based animated GIF creator"; - homepage = https://sourceforge.net/projects/qgifer/; - license = licenses.gpl3; - platforms = platforms.unix; - maintainers = [ maintainers.andrewrk ]; - }; -} diff --git a/pkgs/development/python-modules/docker_compose/default.nix b/pkgs/applications/virtualization/docker-compose/default.nix similarity index 92% rename from pkgs/development/python-modules/docker_compose/default.nix rename to pkgs/applications/virtualization/docker-compose/default.nix index 01a5b4aa8e6893d427cf6acc6edd86ac0ac7c601..4af9c32fed6aaad5a942b88c631fe7d25f0cbf69 100644 --- a/pkgs/development/python-modules/docker_compose/default.nix +++ b/pkgs/applications/virtualization/docker-compose/default.nix @@ -6,12 +6,12 @@ , enum34, functools32, }: buildPythonApplication rec { - version = "1.22.0"; + version = "1.23.1"; pname = "docker-compose"; src = fetchPypi { inherit pname version; - sha256 = "915cdd0ea7aff349d27a8e0585124ac38695635201770a35612837b25e234677"; + sha256 = "15jijx3md70b9xw8818xjm70nr9pc27p7v7is0yi6agf8scvvqkq"; }; # lots of networking and other fails diff --git a/pkgs/applications/virtualization/docker/default.nix b/pkgs/applications/virtualization/docker/default.nix index e83a1af44665ab7b40215bdbecf6383df9235948..c8495155dbca1b9d1b46d2e26d37ea503ca0dcb6 100644 --- a/pkgs/applications/virtualization/docker/default.nix +++ b/pkgs/applications/virtualization/docker/default.nix @@ -136,9 +136,9 @@ rec { --prefix PATH : "$out/libexec/docker:$extraPath" # docker uses containerd now - ln -s ${docker-containerd}/bin/containerd $out/libexec/docker/docker-containerd - ln -s ${docker-containerd}/bin/containerd-shim $out/libexec/docker/docker-containerd-shim - ln -s ${docker-runc}/bin/runc $out/libexec/docker/docker-runc + ln -s ${docker-containerd}/bin/containerd $out/libexec/docker/containerd + ln -s ${docker-containerd}/bin/containerd-shim $out/libexec/docker/containerd-shim + ln -s ${docker-runc}/bin/runc $out/libexec/docker/runc ln -s ${docker-proxy}/bin/docker-proxy $out/libexec/docker/docker-proxy ln -s ${docker-tini}/bin/tini-static $out/libexec/docker/docker-init @@ -197,10 +197,10 @@ rec { # Get revisions from # https://github.com/docker/docker-ce/tree/v${version}/components/engine/hack/dockerfile/install/* - docker_18_06 = dockerGen rec { - version = "18.06.1-ce"; - rev = "e68fc7a215d7133c34aa18e3b72b4a21fd0c6136"; # git commit - sha256 = "1bqd6pv5hga4j1s8jm8q5qdnfbjf8lw1ghdk0bw9hhqkn7rcnrv4"; + docker_18_09 = dockerGen rec { + version = "18.09.0"; + rev = "4d60db472b2bde6931072ca6467f2667c2590dff"; # git commit + sha256 = "0py944f5k71c1cf6ci96vnqk43d5979w7r82cngaxk1g6za6k5yj"; runcRev = "69663f0bd4b60df09991c08812a60108003fa340"; runcSha256 = "1l37r97l3ra4ph069w190d05r0a43s76nn9jvvlkbwrip1cp6gyq"; containerdRev = "468a545b9edcd5932818eb9de8e72413e616e86e"; diff --git a/pkgs/applications/virtualization/virt-manager/default.nix b/pkgs/applications/virtualization/virt-manager/default.nix index 40395568f4ba2bf25ec1b1c8dc44b594103e0277..f2cbe75b869020a284c77ea344bd2c5dd3b058d7 100644 --- a/pkgs/applications/virtualization/virt-manager/default.nix +++ b/pkgs/applications/virtualization/virt-manager/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchurl, python2Packages, intltool, file +{ stdenv, fetchurl, python3Packages, intltool, file , wrapGAppsHook, gtk-vnc, vte, avahi, dconf , gobjectIntrospection, libvirt-glib, system-libvirt , gsettings-desktop-schemas, glib, libosinfo, gnome3, gtk3 @@ -8,14 +8,14 @@ with stdenv.lib; -python2Packages.buildPythonApplication rec { +python3Packages.buildPythonApplication rec { name = "virt-manager-${version}"; - version = "1.5.1"; + version = "2.0.0"; namePrefix = ""; src = fetchurl { url = "http://virt-manager.org/download/sources/virt-manager/${name}.tar.gz"; - sha256 = "1ardmd4sxdmd57y7qpka44gf09c1yq2g0xs074d3k1h925crv27f"; + sha256 = "1b48xbrx99mfiv80c60k3ydzkpcpbq57c8h8dl0gnffmnzbs8vzb"; }; nativeBuildInputs = [ @@ -28,9 +28,9 @@ python2Packages.buildPythonApplication rec { gsettings-desktop-schemas libosinfo gtk3 ] ++ optional spiceSupport spice-gtk; - propagatedBuildInputs = with python2Packages; + propagatedBuildInputs = with python3Packages; [ - pygobject3 ipaddr libvirt libxml2 requests + pygobject3 ipaddress libvirt libxml2 requests ]; patchPhase = '' @@ -39,7 +39,7 @@ python2Packages.buildPythonApplication rec { ''; postConfigure = '' - ${python2Packages.python.interpreter} setup.py configure --prefix=$out + ${python3Packages.python.interpreter} setup.py configure --prefix=$out ''; postInstall = '' diff --git a/pkgs/applications/virtualization/virt-what/default.nix b/pkgs/applications/virtualization/virt-what/default.nix index 0236a34bb1249afebf9ee16376fc1d3adaf15849..8a339ac83224524880a12dfe63bb0b5494e74a5b 100644 --- a/pkgs/applications/virtualization/virt-what/default.nix +++ b/pkgs/applications/virtualization/virt-what/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { name = "virt-what-${version}"; - version = "1.18"; + version = "1.19"; src = fetchurl { url = "https://people.redhat.com/~rjones/virt-what/files/${name}.tar.gz"; - sha256 = "1x32h7i6lh823wj97r5rr2hg1v215kqzly14dwg0mwx62j1dshmw"; + sha256 = "00nhwly5q0ps8yv9cy3c2qp8lfshf3s0kdpwiy5zwk3g77z96rwk"; }; meta = with lib; { diff --git a/pkgs/applications/window-managers/dwm/dwm-status.nix b/pkgs/applications/window-managers/dwm/dwm-status.nix index bf2ab8bbdbe79adfaebf1b952692c1182e9bc600..028bb8c87ee862fb0956e49e17e4fdc46239acd2 100644 --- a/pkgs/applications/window-managers/dwm/dwm-status.nix +++ b/pkgs/applications/window-managers/dwm/dwm-status.nix @@ -3,19 +3,19 @@ rustPlatform.buildRustPackage rec { name = "dwm-status-${version}"; - version = "1.1.2"; + version = "1.2.0"; src = fetchFromGitHub { owner = "Gerschtli"; repo = "dwm-status"; rev = version; - sha256 = "1nyi0p9snx9hddb4hliihskj4gdp933xs0f8kydyiprckikwiyjk"; + sha256 = "0bv1jkqkf509akg3dvdy8b2q1kh8i75vw4n6a9rjvslx9s9nh6ca"; }; nativeBuildInputs = [ makeWrapper pkgconfig ]; buildInputs = [ dbus gdk_pixbuf libnotify xorg.libX11 ]; - cargoSha256 = "1ngdzzxnv4y6xprmkawf6s2696zgwiwgb6ykj5adb4knlx5c634d"; + cargoSha256 = "0wbbbk99hxxlrkm389iqni9aqvw2laarwk6hhwsr4ph3y278qhi8"; postInstall = lib.optionalString enableAlsaUtils '' wrapProgram $out/bin/dwm-status \ diff --git a/pkgs/applications/window-managers/i3/default.nix b/pkgs/applications/window-managers/i3/default.nix index 5c95b9daf2516e01b5bb2e4c630bc673c73e3f12..2e18636c621be99bbd74ec70e8aee3416c525b0a 100644 --- a/pkgs/applications/window-managers/i3/default.nix +++ b/pkgs/applications/window-managers/i3/default.nix @@ -5,11 +5,11 @@ stdenv.mkDerivation rec { name = "i3-${version}"; - version = "4.15"; + version = "4.16"; src = fetchurl { url = "https://i3wm.org/downloads/${name}.tar.bz2"; - sha256 = "09jk70hsdxab24lqvj2f30ijrkbv3f6q9xi5dcsax1dw3x6m4z91"; + sha256 = "1d2mnryn7m9c6d69awd7lwzadliapd0ahi5n8d0ppqy533ssaq6c"; }; nativeBuildInputs = [ which pkgconfig makeWrapper ]; diff --git a/pkgs/applications/window-managers/i3/gaps.nix b/pkgs/applications/window-managers/i3/gaps.nix index 251b893f92ffe52ee4998710048fd82eae5a15f0..01a89b49e715951916dfe00ae21970b5721a322e 100644 --- a/pkgs/applications/window-managers/i3/gaps.nix +++ b/pkgs/applications/window-managers/i3/gaps.nix @@ -3,12 +3,12 @@ i3.overrideAttrs (oldAttrs : rec { name = "i3-gaps-${version}"; - version = "4.15.0.1"; + version = "4.16"; releaseDate = "2018-03-13"; src = fetchurl { url = "https://github.com/Airblader/i3/archive/${version}.tar.gz"; - sha256 = "16s6bink8yj3zix4vww64b745d5drf2vqjg8vz3pwzrark09hfal"; + sha256 = "16d215y9g27b75rifm1cgznxg73fmg5ksigi0gbj7pfd6x6bqcy9"; }; nativeBuildInputs = oldAttrs.nativeBuildInputs ++ [ autoreconfHook ]; diff --git a/pkgs/applications/window-managers/jwm/jwm-settings-manager.nix b/pkgs/applications/window-managers/jwm/jwm-settings-manager.nix new file mode 100644 index 0000000000000000000000000000000000000000..3b764e7095be9b8501a59cb9a25dc953fce14fb3 --- /dev/null +++ b/pkgs/applications/window-managers/jwm/jwm-settings-manager.nix @@ -0,0 +1,44 @@ +{ stdenv, fetchFromGitHub, cmake, pkgconfig, gettext, libXpm, libGL, fltk, hicolor-icon-theme, glib, gnome2, which }: + +stdenv.mkDerivation rec { + name = "jwm-settings-manager-${version}"; + version = "2018-10-19"; + + src = fetchFromGitHub { + owner = "Israel-D"; + repo = "jwm-settings-manager"; + rev = "cb32a70563cf1f3927339093481542b85ec3c8c8"; + sha256 = "0d5bqf74p8zg8azns44g46q973blhmp715k8kcd73x88g7sfir8s"; + }; + + nativeBuildInputs = [ + cmake + pkgconfig + gettext + ]; + + buildInputs = [ + libXpm + libGL + fltk + hicolor-icon-theme + which # needed at runtime to locate optional programs + glib.bin # provides gsettings + gnome2.GConf # provides gconftool-2 + ]; + + postPatch = '' + substituteInPlace CMakeLists.txt \ + --replace 'CMAKE_INSTALL_PREFIX "/usr"' "CMAKE_INSTALL_PREFIX $out" + substituteInPlace data/CMakeLists.txt \ + --replace 'DESTINATION usr/share' "DESTINATION share" + ''; + + meta = with stdenv.lib; { + description = "A full configuration manager for JWM"; + homepage = https://joewing.net/projects/jwm; + license = licenses.gpl3; + platforms = platforms.linux; + maintainers = [ maintainers.romildo ]; + }; +} diff --git a/pkgs/build-support/bintools-wrapper/default.nix b/pkgs/build-support/bintools-wrapper/default.nix index f9ca245beea6f2284422305b75123176e1255526..3ac1e52f3092e99cad12e95f00a8281d7cc490aa 100644 --- a/pkgs/build-support/bintools-wrapper/default.nix +++ b/pkgs/build-support/bintools-wrapper/default.nix @@ -186,6 +186,7 @@ stdenv.mkDerivation { }.${targetPlatform.parsed.cpu.name} else if targetPlatform.isPower then if targetPlatform.isBigEndian then "ppc" else "lppc" else if targetPlatform.isSparc then "sparc" + else if targetPlatform.isAvr then "avr" else throw "unknown emulation for platform: " + targetPlatform.config; in targetPlatform.platform.bfdEmulation or (fmt + sep + arch); @@ -209,7 +210,7 @@ stdenv.mkDerivation { ## General libc support ## - echo "-L${libc_lib}/lib" > $out/nix-support/libc-ldflags + echo "-L${libc_lib}${libc.libdir or "/lib"}" > $out/nix-support/libc-ldflags echo "${libc_lib}" > $out/nix-support/orig-libc echo "${libc_dev}" > $out/nix-support/orig-libc-dev @@ -292,6 +293,16 @@ stdenv.mkDerivation { hardening_unsupported_flags+=" pic" '' + + optionalString targetPlatform.isAvr '' + hardening_unsupported_flags+=" relro bindnow" + '' + + + optionalString (libc != null && targetPlatform.isAvr) '' + for isa in avr5 avr3 avr4 avr6 avr25 avr31 avr35 avr51 avrxmega2 avrxmega4 avrxmega5 avrxmega6 avrxmega7 tiny-stack; do + echo "-L${getLib libc}/avr/lib/$isa" >> $out/nix-support/libc-cflags + done + '' + + '' set +u substituteAll ${./add-flags.sh} $out/nix-support/add-flags.sh diff --git a/pkgs/build-support/build-fhs-userenv/chrootenv/default.nix b/pkgs/build-support/build-fhs-userenv/chrootenv/default.nix index 375c30e1e463bebcebfaade155c9f92ae8164038..70a7a43bd3984370aa983e5e8fd6b05026b4ccc5 100644 --- a/pkgs/build-support/build-fhs-userenv/chrootenv/default.nix +++ b/pkgs/build-support/build-fhs-userenv/chrootenv/default.nix @@ -1,18 +1,15 @@ -{ stdenv, pkgconfig, glib }: +{ stdenv, meson, ninja, pkgconfig, glib }: stdenv.mkDerivation { name = "chrootenv"; + src = ./.; - nativeBuildInputs = [ pkgconfig ]; + nativeBuildInputs = [ meson ninja pkgconfig ]; buildInputs = [ glib ]; - buildCommand = '' - cc ${./chrootenv.c} $(pkg-config --cflags --libs glib-2.0) -o $out - ''; - meta = with stdenv.lib; { description = "Setup mount/user namespace for FHS emulation"; - license = licenses.free; + license = licenses.mit; maintainers = with maintainers; [ yegortimoshenko ]; platforms = platforms.linux; }; diff --git a/pkgs/build-support/build-fhs-userenv/chrootenv/meson.build b/pkgs/build-support/build-fhs-userenv/chrootenv/meson.build new file mode 100644 index 0000000000000000000000000000000000000000..6d0770a0dc4acefa73a3ca1b74d939f18b16e405 --- /dev/null +++ b/pkgs/build-support/build-fhs-userenv/chrootenv/meson.build @@ -0,0 +1,5 @@ +project('chrootenv', 'c') + +glib = dependency('glib-2.0') + +executable('chrootenv', 'chrootenv.c', dependencies: [glib], install: true) diff --git a/pkgs/build-support/build-fhs-userenv/default.nix b/pkgs/build-support/build-fhs-userenv/default.nix index c733556de45c80eff9d2b206073141d7ef2c51a0..707b256cd4b4afaeecfa714e69b9f8da3fcde488 100644 --- a/pkgs/build-support/build-fhs-userenv/default.nix +++ b/pkgs/build-support/build-fhs-userenv/default.nix @@ -28,7 +28,7 @@ in runCommand name { passthru = passthru // { env = runCommand "${name}-shell-env" { shellHook = '' - exec ${chrootenv} ${init "bash"} "$(pwd)" + exec ${chrootenv}/bin/chrootenv ${init runScript} "$(pwd)" ''; } '' echo >&2 "" @@ -41,7 +41,7 @@ in runCommand name { mkdir -p $out/bin cat <$out/bin/${name} #! ${stdenv.shell} - exec ${chrootenv} ${init runScript} "\$(pwd)" "\$@" + exec ${chrootenv}/bin/chrootenv ${init runScript} "\$(pwd)" "\$@" EOF chmod +x $out/bin/${name} ${extraInstallCommands} diff --git a/pkgs/build-support/cc-wrapper/default.nix b/pkgs/build-support/cc-wrapper/default.nix index e59758371a380a09b4c8fac2184769e21d718c6d..06aa9436bfc00a8c854684a91c1c62d2437ed58b 100644 --- a/pkgs/build-support/cc-wrapper/default.nix +++ b/pkgs/build-support/cc-wrapper/default.nix @@ -232,7 +232,7 @@ stdenv.mkDerivation { # compile, because it uses "#include_next " to find the # limits.h file in ../includes-fixed. To remedy the problem, # another -idirafter is necessary to add that directory again. - echo "-B${libc_lib}/lib/ -idirafter ${libc_dev}/include ${optionalString isGNU "-idirafter ${cc}/lib/gcc/*/*/include-fixed"}" > $out/nix-support/libc-cflags + echo "-B${libc_lib}${libc.libdir or "/lib/"} -idirafter ${libc_dev}${libc.incdir or "/include"} ${optionalString isGNU "-idirafter ${cc}/lib/gcc/*/*/include-fixed"}" > $out/nix-support/libc-cflags echo "${libc_lib}" > $out/nix-support/orig-libc echo "${libc_dev}" > $out/nix-support/orig-libc-dev @@ -284,6 +284,20 @@ stdenv.mkDerivation { hardening_unsupported_flags+=" stackprotector" '' + + optionalString targetPlatform.isAvr '' + hardening_unsupported_flags+=" stackprotector pic" + '' + + + optionalString (targetPlatform.libc == "newlib") '' + hardening_unsupported_flags+=" stackprotector fortify pie pic" + '' + + + optionalString (libc != null && targetPlatform.isAvr) '' + for isa in avr5 avr3 avr4 avr6 avr25 avr31 avr35 avr51 avrxmega2 avrxmega4 avrxmega5 avrxmega6 avrxmega7 tiny-stack; do + echo "-B${getLib libc}/avr/lib/$isa" >> $out/nix-support/libc-cflags + done + '' + + '' substituteAll ${./add-flags.sh} $out/nix-support/add-flags.sh substituteAll ${./add-hardening.sh} $out/nix-support/add-hardening.sh diff --git a/pkgs/build-support/closure-info.nix b/pkgs/build-support/closure-info.nix index 58d70b4b0631e1135f0a57fdd7fffe9d5fcb225e..28f2802a5bce64168e1b22712529b493d0cd5db3 100644 --- a/pkgs/build-support/closure-info.nix +++ b/pkgs/build-support/closure-info.nix @@ -4,7 +4,7 @@ # "nix-store --load-db" and "nix-store --register-validity # --hash-given". -{ stdenv, coreutils, jq }: +{ stdenv, coreutils, jq, buildPackages }: { rootPaths }: @@ -17,7 +17,7 @@ stdenv.mkDerivation { exportReferencesGraph.closure = rootPaths; - PATH = "${coreutils}/bin:${jq}/bin"; + PATH = "${buildPackages.coreutils}/bin:${buildPackages.jq}/bin"; builder = builtins.toFile "builder" '' diff --git a/pkgs/build-support/docker/default.nix b/pkgs/build-support/docker/default.nix index 2d6d6c1fc91d89d25b3052ddb8c64875e8162108..890f64a9d3b17f9050528d72557317f9ac22d7ce 100644 --- a/pkgs/build-support/docker/default.nix +++ b/pkgs/build-support/docker/default.nix @@ -11,7 +11,6 @@ pkgs, pigz, nix, - perl, runCommand, rsync, shadow, @@ -23,6 +22,7 @@ referencesByPopularity, writeScript, writeText, + closureInfo }: # WARNING: this API is unstable and may be subject to backwards-incompatible changes in the future. @@ -261,19 +261,6 @@ rec { ${text} ''; - nixRegistration = contents: runCommand "nix-registration" { - buildInputs = [ nix perl ]; - # For obtaining the closure of `contents'. - exportReferencesGraph = - let contentsList = if builtins.isList contents then contents else [ contents ]; - in map (x: [("closure-" + baseNameOf x) x]) contentsList; - } - '' - mkdir $out - printRegistration=1 perl ${pkgs.pathsFromGraph} closure-* > $out/db.dump - perl ${pkgs.pathsFromGraph} closure-* > $out/storePaths - ''; - # Create $maxLayers worth of Docker Layers, one layer per store path # unless there are more paths than $maxLayers. In that case, create # $maxLayers-1 for the most popular layers, and smush the remainaing @@ -795,29 +782,19 @@ rec { # the container. # Be careful since this doesn't work well with multilayer. buildImageWithNixDb = args@{ contents ? null, extraCommands ? "", ... }: - buildImage (args // { + let contentsList = if builtins.isList contents then contents else [ contents ]; + in buildImage (args // { extraCommands = '' echo "Generating the nix database..." echo "Warning: only the database of the deepest Nix layer is loaded." echo " If you want to use nix commands in the container, it would" echo " be better to only have one layer that contains a nix store." - # This requires Nix 1.12 or higher + export NIX_REMOTE=local?root=$PWD - ${nix}/bin/nix-store --load-db < ${nixRegistration contents}/db.dump - - # We fill the store in order to run the 'verify' command that - # generates hash and size of output paths. - # Note when Nix 1.12 is be the stable one, the database dump - # generated by the exportReferencesGraph function will - # contains sha and size. See - # https://github.com/NixOS/nix/commit/c2b0d8749f7e77afc1c4b3e8dd36b7ee9720af4a - storePaths=$(cat ${nixRegistration contents}/storePaths) - echo "Copying everything to /nix/store (will take a while)..." - cp -prd $storePaths nix/store/ - ${nix}/bin/nix-store --verify --check-contents + ${nix}/bin/nix-store --load-db < ${closureInfo {rootPaths = contentsList;}}/registration mkdir -p nix/var/nix/gcroots/docker/ - for i in ${lib.concatStringsSep " " contents}; do + for i in ${lib.concatStringsSep " " contentsList}; do ln -s $i nix/var/nix/gcroots/docker/$(basename $i) done; '' + extraCommands; diff --git a/pkgs/build-support/libredirect/default.nix b/pkgs/build-support/libredirect/default.nix index d13cdd681a219426c6f00d8d8c061c0d24446dad..6e54e2a696c51a0ace1f83598a6848cfbc79fa4e 100644 --- a/pkgs/build-support/libredirect/default.nix +++ b/pkgs/build-support/libredirect/default.nix @@ -1,19 +1,53 @@ -{ stdenv }: +{ stdenv, lib, coreutils }: stdenv.mkDerivation { name = "libredirect-0"; - unpackPhase = "cp ${./libredirect.c} libredirect.c"; + unpackPhase = '' + cp ${./libredirect.c} libredirect.c + cp ${./test.c} test.c + ''; - buildPhase = - '' - gcc -Wall -std=c99 -O3 -shared libredirect.c -o libredirect.so -fPIC -ldl - ''; + libName = "libredirect" + stdenv.targetPlatform.extensions.sharedLibrary; + + outputs = ["out" "hook"]; + + buildPhase = '' + $CC -Wall -std=c99 -O3 -fPIC -ldl -shared \ + ${lib.optionalString stdenv.isDarwin "-Wl,-install_name,$out/lib/$libName"} \ + -o "$libName" \ + libredirect.c + + if [ -n "$doInstallCheck" ]; then + $CC -Wall -std=c99 -O3 test.c -o test + fi + ''; + + installPhase = '' + install -vD "$libName" "$out/lib/$libName" + + mkdir -p "$hook/nix-support" + cat < "$hook/nix-support/setup-hook" + ${if stdenv.isDarwin then '' + export DYLD_INSERT_LIBRARIES="$out/lib/$libName" + export DYLD_FORCE_FLAT_NAMESPACE=1 + '' else '' + export LD_PRELOAD="$out/lib/$libName" + ''} + SETUP_HOOK + ''; + + doInstallCheck = true; - installPhase = "mkdir -p $out/lib; cp libredirect.so $out/lib"; + installCheckPhase = '' + ( + source "$hook/nix-support/setup-hook" + NIX_REDIRECTS="/foo/bar/test=${coreutils}/bin/true" ./test + ) + ''; meta = { - platforms = stdenv.lib.platforms.linux; + platforms = stdenv.lib.platforms.unix; description = "An LD_PRELOAD library to intercept and rewrite the paths in glibc calls"; longDescription = '' libredirect is an LD_PRELOAD library to intercept and rewrite the paths in diff --git a/pkgs/build-support/libredirect/libredirect.c b/pkgs/build-support/libredirect/libredirect.c index d1e8f77fb1f6629a30dbb297b262345728d9fb0f..ba1e6c57e12ef6546fc7c3ed1d29069a0e023870 100644 --- a/pkgs/build-support/libredirect/libredirect.c +++ b/pkgs/build-support/libredirect/libredirect.c @@ -119,6 +119,13 @@ int __xstat64(int ver, const char * path, struct stat64 * st) return __xstat64_real(ver, rewrite(path, buf), st); } +int stat(const char * path, struct stat * st) +{ + int (*__stat_real) (const char *, struct stat *) = dlsym(RTLD_NEXT, "stat"); + char buf[PATH_MAX]; + return __stat_real(rewrite(path, buf), st); +} + int * access(const char * path, int mode) { int * (*access_real) (const char *, int mode) = dlsym(RTLD_NEXT, "access"); diff --git a/pkgs/build-support/libredirect/test.c b/pkgs/build-support/libredirect/test.c new file mode 100644 index 0000000000000000000000000000000000000000..b57664db3c19fb283861bfeed86c3271f43f317a --- /dev/null +++ b/pkgs/build-support/libredirect/test.c @@ -0,0 +1,59 @@ +#include +#include +#include +#include +#include + +#include +#include +#include + +#define TESTPATH "/foo/bar/test" + +extern char **environ; + +void test_spawn(void) { + pid_t pid; + int ret; + posix_spawn_file_actions_t file_actions; + char *argv[] = {"true", NULL}; + + assert(posix_spawn_file_actions_init(&file_actions) == 0); + + ret = posix_spawn(&pid, TESTPATH, &file_actions, NULL, argv, environ); + + assert(ret == 0); + assert(waitpid(pid, NULL, 0) != -1); +} + +void test_execv(void) { + char *argv[] = {"true", NULL}; + assert(execv(TESTPATH, argv) == 0); +} + +int main(void) +{ + FILE *testfp; + int testfd; + struct stat testsb; + + testfp = fopen(TESTPATH, "r"); + assert(testfp != NULL); + fclose(testfp); + + testfd = open(TESTPATH, O_RDONLY); + assert(testfd != -1); + close(testfd); + + assert(access(TESTPATH, X_OK) == 0); + + assert(stat(TESTPATH, &testsb) != -1); + + test_spawn(); + test_execv(); + + /* If all goes well, this is never reached because test_execv() replaces + * the current process. + */ + return 0; +} diff --git a/pkgs/build-support/ocaml/dune.nix b/pkgs/build-support/ocaml/dune.nix new file mode 100644 index 0000000000000000000000000000000000000000..7386b07f575cfb1ba943bb8a0ed9fff774a3cc15 --- /dev/null +++ b/pkgs/build-support/ocaml/dune.nix @@ -0,0 +1,36 @@ +{ stdenv, fetchurl, ocaml, findlib, dune, opaline }: + +{ pname, version, buildInputs ? [], ... }@args: + +if args ? minimumOCamlVersion && + ! stdenv.lib.versionAtLeast ocaml.version args.minimumOCamlVersion +then throw "${pname}-${version} is not available for OCaml ${ocaml.version}" +else + +stdenv.mkDerivation ({ + + buildPhase = '' + runHook preBuild + dune build -p ${pname} + runHook postBuild + ''; + checkPhase = '' + runHook preCheck + dune runtest -p ${pname} + runHook postCheck + ''; + installPhase = '' + runHook preInstall + ${opaline}/bin/opaline -prefix $out -libdir $OCAMLFIND_DESTDIR + runHook postInstall + ''; + + meta.platform = ocaml.meta.platform; + +} // args // { + + name = "ocaml${ocaml.version}-${pname}-${version}"; + + buildInputs = [ ocaml dune findlib ] ++ buildInputs; + +}) diff --git a/pkgs/build-support/setup-hooks/auto-patchelf.sh b/pkgs/build-support/setup-hooks/auto-patchelf.sh index 7c165627f72e1025d1f353044127e17cb5e03be4..d1ae317ff9a4480cb213fe6249ecdb744a1d0808 100644 --- a/pkgs/build-support/setup-hooks/auto-patchelf.sh +++ b/pkgs/build-support/setup-hooks/auto-patchelf.sh @@ -7,7 +7,16 @@ gatherLibraries() { addEnvHooks "$targetOffset" gatherLibraries isExecutable() { - readelf -h "$1" 2> /dev/null | grep -q '^ *Type: *EXEC\>' + # For dynamically linked ELF files it would be enough to check just for the + # INTERP section. However, we won't catch statically linked executables as + # they only have an ELF type of EXEC but no INTERP. + # + # So what we do here is just check whether *either* the ELF type is EXEC + # *or* there is an INTERP section. This also catches position-independent + # executables, as they typically have an INTERP section but their ELF type + # is DYN. + LANG=C readelf -h -l "$1" 2> /dev/null \ + | grep -q '^ *Type: *EXEC\>\|^ *INTERP\>' } # We cache dependencies so that we don't need to search through all of them on @@ -157,7 +166,7 @@ autoPatchelf() { isELF "$file" || continue if isExecutable "$file"; then # Skip if the executable is statically linked. - readelf -l "$file" | grep -q "^ *INTERP\\>" || continue + LANG=C readelf -l "$file" | grep -q "^ *INTERP\\>" || continue fi autoPatchelfFile "$file" done < <(find "$prefix" -type f -print0) diff --git a/pkgs/build-support/templaterpm/nix-template-rpm.py b/pkgs/build-support/templaterpm/nix-template-rpm.py index ec3a619027e7e961ead9d3b0cd79e5713db98765..f39595f89776110e919970e8cc155217949b4a96 100755 --- a/pkgs/build-support/templaterpm/nix-template-rpm.py +++ b/pkgs/build-support/templaterpm/nix-template-rpm.py @@ -44,14 +44,14 @@ class SPECTemplate(object): self.key = self.getSelfKey() tmpDir = os.path.join(outputDir, self.rewriteName(self.spec.sourceHeader['name'])) - if self.translateTable != None: + if self.translateTable is not None: self.relOutputDir = self.translateTable.path(self.key,tmpDir) else: self.relOutputDir = tmpDir self.final_output_dir = os.path.normpath( self.relOutputDir ) - if self.repositoryDir != None: + if self.repositoryDir is not None: self.potential_repository_dir = os.path.normpath( os.path.join(self.repositoryDir,self.relOutputDir) ) @@ -59,7 +59,7 @@ class SPECTemplate(object): def rewriteCommands(self, string): string = string.replace('SPACER_DIR_FOR_REMOVAL/','') string = string.replace('SPACER_DIR_FOR_REMOVAL','') - string = '\n'.join(map(lambda line: ' '.join(map(lambda x: x.replace('SOURCE_DIR_SPACER/',('${./' if (self.buildRootInclude == None) else '${buildRoot}/usr/share/buildroot/SOURCES/'))+('}' if (self.buildRootInclude == None) else '') if x.startswith('SOURCE_DIR_SPACER/') else x, line.split(' '))), string.split('\n'))) + string = '\n'.join(map(lambda line: ' '.join(map(lambda x: x.replace('SOURCE_DIR_SPACER/',('${./' if (self.buildRootInclude is None) else '${buildRoot}/usr/share/buildroot/SOURCES/'))+('}' if (self.buildRootInclude is None) else '') if x.startswith('SOURCE_DIR_SPACER/') else x, line.split(' '))), string.split('\n'))) string = string.replace('\n','\n ') string = string.rstrip() return string @@ -82,7 +82,7 @@ class SPECTemplate(object): rewrite = lambda l: ''.join(camelcase(filterDoc(filterDevel(l)))) def filterPackageGroup(target): - if target == None: + if target is None: return [ rewrite(x.split('-')) for x in inputs if (not x.split('-')[0] in self.packageGroups) or (len(x.split('-')) == 1) ] elif target in self.packageGroups: return [ target + '_' + rewrite(x.split('-')[1:]) for x in inputs if (x.split('-')[0] == target) and (len(x.split('-')) > 1)] @@ -90,7 +90,7 @@ class SPECTemplate(object): raise Exception("Unknown target") return [] - if target == None: + if target is None: packages = filterPackageGroup(None) packages.sort() elif target in self.packageGroups: @@ -111,7 +111,7 @@ class SPECTemplate(object): def getBuildInputs(self,target=None): inputs = self.rewriteInputs(target,self.spec.sourceHeader['requires']) - if self.translateTable != None: + if self.translateTable is not None: return map(lambda x: self.translateTable.name(x), inputs) else: return inputs @@ -125,7 +125,7 @@ class SPECTemplate(object): return key def getSelf(self): - if self.translateTable != None: + if self.translateTable is not None: return self.translateTable.name(self.key) else: return self.key @@ -161,7 +161,7 @@ class SPECTemplate(object): facts["sha256"].append(sha256) patches = [source for (source, _, flag) in self.spec.sources if flag==2] - if self.buildRootInclude == None: + if self.buildRootInclude is None: facts["patches"] = map(lambda x: './'+x, patches) else: facts["patches"] = map(lambda x: '"${buildRoot}/usr/share/buildroot/SOURCES/'+x+'"', reversed(patches)) @@ -292,7 +292,7 @@ class SPECTemplate(object): if not os.path.exists(self.final_output_dir): os.makedirs(self.final_output_dir) - if self.inputDir != None: + if self.inputDir is not None: self.copySources(self.inputDir, self.final_output_dir) self.copyPatches(self.inputDir, self.final_output_dir) @@ -334,19 +334,19 @@ class NixTemplate(object): url = re.match(r'^\s*url\s*=\s*"?(.*?)"?\s*;\s*$', line) sha256 = re.match(r'^\s*sha256\s*=\s*"(.*?)"\s*;\s*$', line) patches = re.match(r'^\s*patches\s*=\s*(\[.*?\])\s*;\s*$', line) - if name != None and self.original["name"] == None: + if name is not None and self.original["name"] is None: self.original["name"] = name.group(1) self.matchedLines[n] = "name" - if version != None and self.original["version"] == None: + if version is not None and self.original["version"] is None: self.original["version"] = version.group(1) self.matchedLines[n] = "version" - if url != None and self.original["url"] == None: + if url is not None and self.original["url"] is None: self.original["url"] = url.group(1) self.matchedLines[n] = "url" - if sha256 != None and self.original["sha256"] == None: + if sha256 is not None and self.original["sha256"] is None: self.original["sha256"] = sha256.group(1) self.matchedLines[n] = "sha256" - if patches != None and self.original["patches"] == None: + if patches is not None and self.original["patches"] is None: self.original["patches"] = patches.group(1) self.matchedLines[n] = "patches" @@ -355,7 +355,7 @@ class NixTemplate(object): nixTemplateFile = open(os.path.normpath(self.nixfile),'r') nixOutFile = open(os.path.normpath(nixOut),'w') for (n,line) in enumerate(nixTemplateFile): - if self.matchedLines.has_key(n) and self.update[self.matchedLines[n]] != None: + if self.matchedLines.has_key(n) and self.update[self.matchedLines[n]] is not None: nixOutFile.write(line.replace(self.original[self.matchedLines[n]], self.update[self.matchedLines[n]], 1)) else: nixOutFile.write(line) @@ -383,14 +383,14 @@ class TranslationTable(object): def update(self, key, path, name=None): self.tablePath[key] = path - if name != None: + if name is not None: self.tableName[key] = name def readTable(self, tableFile): with file(tableFile, 'r') as infile: for line in infile: match = re.match(r'^(.+?)\s+(.+?)\s+(.+?)\s*$', line) - if match != None: + if match is not None: if not self.tablePath.has_key(match.group(1)): self.tablePath[match.group(1)] = match.group(2) if not self.tableName.has_key(match.group(1)): @@ -449,7 +449,7 @@ if __name__ == "__main__": nameMap = {} newTable = TranslationTable() - if args.translate != None: + if args.translate is not None: table = TranslationTable() table.readTable(args.translate) newTable.readTable(args.translate) @@ -461,7 +461,7 @@ if __name__ == "__main__": sys.stderr.write("INFO: generate nix file from: %s\n" % specPath) spec = SPECTemplate(specPath, args.output, args.inputSources, args.buildRoot, table, args.repository, allPackagesDir, args.maintainer) - if args.repository != None: + if args.repository is not None: if os.path.exists(os.path.join(spec.potential_repository_dir,'default.nix')): nixTemplate = NixTemplate(os.path.join(spec.potential_repository_dir,'default.nix')) nixTemplate.loadUpdate(spec.facts) @@ -470,12 +470,12 @@ if __name__ == "__main__": nixTemplate.generateUpdated(os.path.join(spec.final_output_dir,'default.nix')) else: sys.stderr.write("WARNING: Repository does not contain template: %s\n" % os.path.join(spec.potential_repository_dir,'default.nix')) - if args.buildRoot == None: + if args.buildRoot is None: spec.generateCombined() else: buildRootContent[spec.key] = spec.generateSplit() else: - if args.buildRoot == None: + if args.buildRoot is None: spec.generateCombined() else: buildRootContent[spec.key] = spec.generateSplit() @@ -486,7 +486,7 @@ if __name__ == "__main__": except Exception, e: sys.stderr.write("ERROR: %s failed with:\n%s\n%s\n" % (specPath,e.message,traceback.format_exc())) - if args.translateOut != None: + if args.translateOut is not None: if not os.path.exists(os.path.dirname(os.path.normpath(args.translateOut))): os.makedirs(os.path.dirname(os.path.normpath(args.translateOut))) newTable.writeTable(args.translateOut) @@ -502,7 +502,7 @@ if __name__ == "__main__": allPackagesFile.write( '\n\n'.join(map(lambda x: x.callPackage(), map(lambda x: nameMap[x], sortedSpecs))) ) allPackagesFile.close() - if args.buildRoot != None: + if args.buildRoot is not None: buildRootFilename = os.path.normpath( args.buildRoot ) if not os.path.exists(os.path.dirname(buildRootFilename)): os.makedirs(os.path.dirname(buildRootFilename)) diff --git a/pkgs/data/fonts/comfortaa/default.nix b/pkgs/data/fonts/comfortaa/default.nix index 0dd4f727ad25e082a6622b7580ee2c23aca63f53..f7ec6e8b8c87576c62eb81e859b7f03ffb64b88c 100644 --- a/pkgs/data/fonts/comfortaa/default.nix +++ b/pkgs/data/fonts/comfortaa/default.nix @@ -1,18 +1,18 @@ {stdenv, fetchzip}: let - version = "2.004"; + version = "3.001"; in fetchzip rec { name = "comfortaa-${version}"; - url = "http://openfontlibrary.org/assets/downloads/comfortaa/38318a69b56162733bf82bc0170b7521/comfortaa.zip"; + url = "https://orig00.deviantart.net/40a3/f/2017/093/d/4/comfortaa___font_by_aajohan-d1qr019.zip"; postFetch = '' mkdir -p $out/share/fonts $out/share/doc unzip -l $downloadedFile unzip -j $downloadedFile \*.ttf -d $out/share/fonts/truetype unzip -j $downloadedFile \*/FONTLOG.txt \*/donate.html -d $out/share/doc/${name} ''; - sha256 = "1gnscf3kw9p5gbc5594a22cc6nmiir9mhp1nl3mkbzd4v1jfbh2h"; + sha256 = "0z7xr0cnn6ghwivrm5b5awq9bzhnay3y99qq6dkdgfkfdsaz0n9h"; meta = with stdenv.lib; { homepage = http://aajohan.deviantart.com/art/Comfortaa-font-105395949; diff --git a/pkgs/data/fonts/ibm-plex/default.nix b/pkgs/data/fonts/ibm-plex/default.nix index ba214dd35fd07971b0fd39eef07bdf5bc39439f2..e5a281eebf6e4546b5b3db75ee93f2a30490dcef 100644 --- a/pkgs/data/fonts/ibm-plex/default.nix +++ b/pkgs/data/fonts/ibm-plex/default.nix @@ -1,7 +1,7 @@ { lib, fetchzip }: let - version = "1.1.6"; + version = "1.2.1"; in fetchzip rec { name = "ibm-plex-${version}"; url = "https://github.com/IBM/plex/releases/download/v${version}/OpenType.zip"; @@ -9,7 +9,7 @@ in fetchzip rec { mkdir -p $out/share/fonts unzip -j $downloadedFile \*.otf -d $out/share/fonts/opentype ''; - sha256 = "0n9qmh6v7gvrl1mfb0knygxlbkb78hvkdrppssx64m3pk4pxw85a"; + sha256 = "1mwlw39nbqrk08crvgm77l98yyyabwhcgsng89c9s67gq4mlxmxa"; meta = with lib; { description = "IBM Plex Typeface"; diff --git a/pkgs/data/fonts/open-dyslexic/default.nix b/pkgs/data/fonts/open-dyslexic/default.nix index 40a9be3282e07dc3266e8370cc8f41d71b1f45c9..7fa57463ece33843bf1969a17af961a2d8b2531f 100644 --- a/pkgs/data/fonts/open-dyslexic/default.nix +++ b/pkgs/data/fonts/open-dyslexic/default.nix @@ -1,11 +1,11 @@ {stdenv, fetchzip}: let - version = "2014-11-11"; + version = "2016-06-23"; in fetchzip { name = "open-dyslexic-${version}"; - url = https://github.com/antijingoist/open-dyslexic/archive/f4b5ba89018b44d633608907e15f93fb3fabbabc.zip; + url = https://github.com/antijingoist/open-dyslexic/archive/20160623-Stable.zip; postFetch = '' mkdir -p $out/share/{doc,fonts} @@ -13,7 +13,7 @@ in fetchzip { unzip -j $downloadedFile \*/README.md -d $out/share/doc/open-dyslexic ''; - sha256 = "045xc7kj56q4ygnjppm8f8fwqqvf21x1piabm4nh8hwgly42a3w2"; + sha256 = "1vl8z5rknh2hpr2f0v4b2qgs5kclx5pzyk8al7243k5db82a2cyi"; meta = with stdenv.lib; { homepage = https://opendyslexic.org/; diff --git a/pkgs/data/fonts/overpass/default.nix b/pkgs/data/fonts/overpass/default.nix index 8bb4e82747adda54a76c4db758e4a4b331d67572..c39bb945f48d9bd5892c1715165248a6296a6d4e 100644 --- a/pkgs/data/fonts/overpass/default.nix +++ b/pkgs/data/fonts/overpass/default.nix @@ -1,7 +1,7 @@ { stdenv, fetchzip }: let - version = "3.0.2"; + version = "3.0.3"; in fetchzip rec { name = "overpass-${version}"; @@ -12,7 +12,7 @@ in fetchzip rec { mkdir -p $out/share/doc/${name} ; unzip -j $downloadedFile \*.md -d $out/share/doc/${name} ''; - sha256 = "05zv3zcfc9a707sn3hhf46b126k19d9byzvi5ixp5y2548vjvl6s"; + sha256 = "1m6p7rrlyqikjvypp4698sn0lp3a4z0z5al4swblfhg8qaxzv5pg"; meta = with stdenv.lib; { homepage = http://overpassfont.org/; diff --git a/pkgs/data/icons/maia-icon-theme/default.nix b/pkgs/data/icons/maia-icon-theme/default.nix index 82aafca11f4ff0eae2a438e64bd9140b6b41bd76..7b4ed7a66809bda438ff4e4df68a256bbb1d8d5c 100644 --- a/pkgs/data/icons/maia-icon-theme/default.nix +++ b/pkgs/data/icons/maia-icon-theme/default.nix @@ -1,14 +1,16 @@ -{ stdenv, fetchFromGitHub, cmake, extra-cmake-modules, gtk3, kdeFrameworks }: +{ stdenv, fetchFromGitLab, cmake, extra-cmake-modules, gtk3, kdeFrameworks, hicolor-icon-theme }: stdenv.mkDerivation rec { name = "maia-icon-theme-${version}"; - version = "2016-09-16"; + version = "2018-02-24"; - src = fetchFromGitHub { - owner = "manjaro"; - repo = "artwork-maia"; - rev = "f6718cd9c383adb77af54b694c47efa4d581f5b5"; - sha256 = "0f9l3k9abgg8islzddrxgbxaw6vbai5bvz5qi1v2fzir7ykx7bgj"; + src = fetchFromGitLab { + domain = "gitlab.manjaro.org"; + group = "artwork"; + owner = "themes"; + repo = "maia"; + rev = "b61312cc80cb9d12b0d8a55b3e61668eb6b77d2d"; + sha256 = "1g98snlh96z4sqw9sfd7fxgamh45pcj3lh1kcmng7mirvrcn2pam"; }; nativeBuildInputs = [ @@ -19,10 +21,20 @@ stdenv.mkDerivation rec { kdeFrameworks.kwindowsystem ]; + buildInputs = [ + hicolor-icon-theme + ]; + + postFixup = '' + for theme in $out/share/icons/*; do + gtk-update-icon-cache $theme + done + ''; + meta = with stdenv.lib; { description = "Icons based on Breeze and Super Flat Remix"; - homepage = https://github.com/manjaro/artwork-maia; - license = licenses.free; # https://github.com/manjaro/artwork-maia/issues/27 + homepage = https://gitlab.manjaro.org/artwork/themes/maia; + license = licenses.lgpl3; maintainers = with maintainers; [ mounium ]; platforms = platforms.all; }; diff --git a/pkgs/data/icons/paper-icon-theme/default.nix b/pkgs/data/icons/paper-icon-theme/default.nix index b16c9b076824169e03e0a8f13a8d202efeaf02fe..de808e44ea6ca3f7353990472dff4604c345ab84 100644 --- a/pkgs/data/icons/paper-icon-theme/default.nix +++ b/pkgs/data/icons/paper-icon-theme/default.nix @@ -18,6 +18,11 @@ stdenv.mkDerivation rec { patchShebangs meson/post_install.py ''; + postInstall = '' + # The cache for Paper-Mono-Dark is missing + gtk-update-icon-cache "$out"/share/icons/Paper-Mono-Dark; + ''; + meta = with stdenv.lib; { description = "Modern icon theme designed around bold colours and simple geometric shapes"; homepage = https://snwh.org/paper; diff --git a/pkgs/data/misc/hackage/default.nix b/pkgs/data/misc/hackage/default.nix index 0be9abba71d6972d02080bc935350391474d2e37..17f51e0d30363dec1dbe5558e19dd0e06a21155b 100644 --- a/pkgs/data/misc/hackage/default.nix +++ b/pkgs/data/misc/hackage/default.nix @@ -1,6 +1,6 @@ { fetchurl }: fetchurl { - url = "https://github.com/commercialhaskell/all-cabal-hashes/archive/420a405e4dbccd78b2a471b632b9fe1a1e04502b.tar.gz"; - sha256 = "01vdbp1yh2s0afijz9ap4590mlpiica7l6k0mpfc0jwzymn9w86n"; + url = "https://github.com/commercialhaskell/all-cabal-hashes/archive/1fba236a8a8f685aaf55029d20ab24d7e4cbc5ba.tar.gz"; + sha256 = "0yy6ass2c0vn81pcvb0ksc1qh3hlw2q97937vp73jawghgwsy9qv"; } diff --git a/pkgs/data/misc/osinfo-db/default.nix b/pkgs/data/misc/osinfo-db/default.nix index 94e3218ad35e293e1606887ac4b17d1afaac9cfb..b4de04780bd03195a86d460e8544d37ef6d5888d 100644 --- a/pkgs/data/misc/osinfo-db/default.nix +++ b/pkgs/data/misc/osinfo-db/default.nix @@ -1,11 +1,11 @@ { stdenv, fetchurl, osinfo-db-tools, intltool, libxml2 }: stdenv.mkDerivation rec { - name = "osinfo-db-20181011"; + name = "osinfo-db-20181101"; src = fetchurl { url = "https://releases.pagure.org/libosinfo/${name}.tar.xz"; - sha256 = "1f0xa50xn15p3zig9031icqky8drf0654sbjmmziw2ijcdyzfkcp"; + sha256 = "1n9xq5nspfgsdqifh23ypsc85n5xl6cdbwdlacp0sa8rhkmfdvd7"; }; nativeBuildInputs = [ osinfo-db-tools intltool libxml2 ]; diff --git a/pkgs/desktops/deepin/dbus-factory/default.nix b/pkgs/desktops/deepin/dbus-factory/default.nix index 66d28cbcaf3eccc1863c82f1d09a8cba2f5f82b3..3c99c40ee807538c55f930f857b629b7224750ef 100644 --- a/pkgs/desktops/deepin/dbus-factory/default.nix +++ b/pkgs/desktops/deepin/dbus-factory/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchFromGitHub, jq, libxml2, go-dbus-generator }: +{ stdenv, fetchFromGitHub, jq, libxml2, go-dbus-generator, deepin }: stdenv.mkDerivation rec { name = "${pname}-${version}"; @@ -18,7 +18,13 @@ stdenv.mkDerivation rec { go-dbus-generator ]; - makeFlags = [ "GOPATH=$(out)/share/gocode" ]; + makeFlags = [ "GOPATH=$(out)/share/go" ]; + + postPatch = '' + sed -i -e 's:/share/gocode:/share/go:' Makefile + ''; + + passthru.updateScript = deepin.updateScript { inherit name; }; meta = with stdenv.lib; { description = "Generates static DBus bindings for Golang and QML at build-time"; diff --git a/pkgs/desktops/deepin/dde-api/default.nix b/pkgs/desktops/deepin/dde-api/default.nix index d8452e5f7a38e996c01a74147cc86e5c6ba1b3d1..c1321acb853ea3d2eecfb43ea95cf9cce7056ac7 100644 --- a/pkgs/desktops/deepin/dde-api/default.nix +++ b/pkgs/desktops/deepin/dde-api/default.nix @@ -1,11 +1,12 @@ { stdenv, buildGoPackage, fetchFromGitHub, pkgconfig, -go-gir-generator, glib, gtk3, poppler, librsvg, pulseaudio, alsaLib, -libcanberra, gnome3, deepin-gettext-tools, go }: + deepin-gettext-tools, go-dbus-factory, go-gir-generator, go-lib, + alsaLib, glib, gtk3, libcanberra, libgudev, librsvg, poppler, + pulseaudio, go, deepin }: buildGoPackage rec { name = "${pname}-${version}"; pname = "dde-api"; - version = "3.1.30"; + version = "3.5.0"; goPackagePath = "pkg.deepin.io/dde/api"; @@ -13,29 +14,32 @@ buildGoPackage rec { owner = "linuxdeepin"; repo = pname; rev = version; - sha256 = "0piw6ka2xcbd5vi7m33d1afdjbb7nycxvmai530ka6r2xjabrkir"; + sha256 = "1g3s0i5wa6qyv00yksz4r4cy2vhiknq8v0yx7aribvwm3gxf7jw3"; }; goDeps = ./deps.nix; nativeBuildInputs = [ pkgconfig - go-gir-generator deepin-gettext-tools + go-dbus-factory + go-gir-generator + go-lib ]; buildInputs = [ + alsaLib glib gtk3 - poppler + libcanberra + libgudev librsvg + poppler pulseaudio - alsaLib - libcanberra - gnome3.libgudev ]; postPatch = '' + patchShebangs . sed -i -e "s|/var|$bin/var|" Makefile ''; @@ -50,6 +54,8 @@ buildGoPackage rec { remove-references-to -t ${go} $bin/bin/* $bin/lib/deepin-api/* ''; + passthru.updateScript = deepin.updateScript { inherit name; }; + meta = with stdenv.lib; { description = "Go-lang bindings for dde-daemon"; homepage = https://github.com/linuxdeepin/dde-api; diff --git a/pkgs/desktops/deepin/dde-api/deps.nix b/pkgs/desktops/deepin/dde-api/deps.nix index 9df368325e3c6c86393b3ba1392a342a43daa075..bd7a13043da2d3e631a431beafe0ac91ef0bc011 100644 --- a/pkgs/desktops/deepin/dde-api/deps.nix +++ b/pkgs/desktops/deepin/dde-api/deps.nix @@ -32,35 +32,26 @@ fetch = { type = "git"; url = "https://github.com/disintegration/imaging"; - rev = "32df9565b4e0c1460f1915d53f6ff198d9a41af2"; - sha256 = "1nkmaav375fv4610g8i9bam33pv4aa4fy2n4nypprhc7vq0svwkm"; + rev = "9458da53d1e65e098d48467a4317c403327e4424"; + sha256 = "1b0ma9if8s892qfx5b1vjinxn00ah9vsyxijs8knkilrhf5vqcx4"; }; } { - goPackagePath = "github.com/kr/pretty"; + goPackagePath = "github.com/fogleman/gg"; fetch = { type = "git"; - url = "https://github.com/kr/pretty"; - rev = "73f6ac0b30a98e433b289500d779f50c1a6f0712"; - sha256 = "18m4pwg2abd0j9cn5v3k2ksk9ig4vlwxmlw9rrglanziv9l967qp"; + url = "https://github.com/fogleman/gg"; + rev = "0e0ff3ade7039063fe954cc1b45fad6cd4ac80db"; + sha256 = "06gvsngfwizdxin90nldix5503fqgnwqmqvxzrz0xg5hfazwfra5"; }; } { - goPackagePath = "github.com/kr/text"; + goPackagePath = "github.com/golang/freetype"; fetch = { type = "git"; - url = "https://github.com/kr/text"; - rev = "e2ffdb16a802fe2bb95e2e35ff34f0e53aeef34f"; - sha256 = "1gm5bsl01apvc84bw06hasawyqm4q84vx1pm32wr9jnd7a8vjgj1"; - }; - } - { - goPackagePath = "github.com/linuxdeepin/go-dbus-factory"; - fetch = { - type = "git"; - url = "https://github.com/linuxdeepin/go-dbus-factory"; - rev = "2a30fc6fb47b70b8879855df8e29c8f581c419aa"; - sha256 = "0b0j47n3bb5fd04p01jla6k9vz2ck8l8512ga0xsn78177yb2z0w"; + url = "https://github.com/golang/freetype"; + rev = "e2365dfdc4a05e4b8299a783240d4a7d5a65d4e4"; + sha256 = "194w3djc6fv1rgcjqds085b9fq074panc5vw582bcb8dbfzsrqxc"; }; } { @@ -68,8 +59,8 @@ fetch = { type = "git"; url = "https://github.com/linuxdeepin/go-x11-client"; - rev = "8f12fd35ff10b391f0321aa41b94db6acd951ea3"; - sha256 = "1axxzzhbiwvi76d19bix3zm5wv3qmlq0wgji9mwjbmkb4bvp0v3d"; + rev = "03541136501cab4910ad8852fe749ef8e18907ca"; + sha256 = "1iiw8qclpklim81hz1sdjp2ajw0ljvjz19n9jly86nbw6m8x4gkp"; }; } { @@ -86,8 +77,8 @@ fetch = { type = "git"; url = "https://go.googlesource.com/image"; - rev = "991ec62608f3c0da01d400756917825d1e2fd528"; - sha256 = "0jipi9czjczi6hlqb5kchgml8r6h6qyb4gqrb0nnb63m25510019"; + rev = "69cc3646b96e61de0b417f4815b86c36e65783ee"; + sha256 = "0nkywb3r0qvwkmykpswnf0svxi463ycn293y5jjididzxv9qxdp9"; }; } { @@ -95,8 +86,8 @@ fetch = { type = "git"; url = "https://go.googlesource.com/net"; - rev = "146acd28ed5894421fb5aac80ca93bc1b1f46f87"; - sha256 = "0d177474z85nvxz8ch6y9wjqz288844wwx8q9za3x2njnk4jbgxj"; + rev = "c44066c5c816ec500d459a2a324a753f78531ae0"; + sha256 = "0mgww74bl15d0jvsh4f3qr1ckjzb8icb8hn0mgs5ppa0b2fgpc4f"; }; } { @@ -108,22 +99,4 @@ sha256 = "0mndnv3hdngr3bxp7yxfd47cas4prv98sqw534mx7vp38gd88n5r"; }; } - { - goPackagePath = "gopkg.in/check.v1"; - fetch = { - type = "git"; - url = "https://gopkg.in/check.v1"; - rev = "788fd78401277ebd861206a03c884797c6ec5541"; - sha256 = "0v3bim0j375z81zrpr5qv42knqs0y2qv2vkjiqi5axvb78slki1a"; - }; - } - { - goPackagePath = "pkg.deepin.io/lib"; - fetch = { - type = "git"; - url = "https://github.com/linuxdeepin/go-lib.git"; - rev = "f09dcc32fc5a36b53ff7760e5a06e7f8f97b81f9"; - sha256 = "1z4iw7h6lknm9jrna2c73icg1a1mxvzrqdhgjvaiww89mql1jzb4"; - }; - } ] diff --git a/pkgs/desktops/deepin/dde-calendar/default.nix b/pkgs/desktops/deepin/dde-calendar/default.nix index ad6b0f1912a6230fc8e9aa17aa1f78fde0882169..6d0abab2100f46e0f4430ef7ee1f58d5de627e66 100644 --- a/pkgs/desktops/deepin/dde-calendar/default.nix +++ b/pkgs/desktops/deepin/dde-calendar/default.nix @@ -1,5 +1,5 @@ { stdenv, fetchFromGitHub, pkgconfig, qmake, qttools, - deepin-gettext-tools, dtkcore, dtkwidget + deepin-gettext-tools, dtkcore, dtkwidget, deepin }: stdenv.mkDerivation rec { @@ -34,6 +34,8 @@ stdenv.mkDerivation rec { -e "s,/usr,$out," ''; + passthru.updateScript = deepin.updateScript { inherit name; }; + meta = with stdenv.lib; { description = "Calendar for Deepin Desktop Environment"; homepage = https://github.com/linuxdeepin/dde-calendar; diff --git a/pkgs/desktops/deepin/dde-daemon/default.nix b/pkgs/desktops/deepin/dde-daemon/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..3678694be9eee488c90036f62e54503c7f613b1d --- /dev/null +++ b/pkgs/desktops/deepin/dde-daemon/default.nix @@ -0,0 +1,92 @@ +{ stdenv, buildGoPackage, fetchFromGitHub, fetchpatch, pkgconfig, + dbus-factory, go-dbus-factory, go-gir-generator, go-lib, + deepin-gettext-tools, dde-api, alsaLib, glib, gtk3, libinput, libnl, + librsvg, linux-pam, networkmanager, pulseaudio, xorg, gnome3, + python3Packages, hicolor-icon-theme, go, deepin }: + +buildGoPackage rec { + name = "${pname}-${version}"; + pname = "dde-daemon"; + version = "3.6.0"; + + goPackagePath = "pkg.deepin.io/dde/daemon"; + + src = fetchFromGitHub { + owner = "linuxdeepin"; + repo = pname; + rev = version; + sha256 = "0gn2zp34wg79lvzdfla6yb4gs3f9ll83kj765zvig1wpx51nq1aj"; + }; + + patches = [ + # https://github.com/linuxdeepin/dde-daemon/issues/51 + (fetchpatch { + name = "dde-daemon_3.2.3.patch"; + url = https://github.com/jouyouyun/tap-gesture-patches/raw/master/patches/dde-daemon_3.2.3.patch; + sha256 = "0a3xb15czpfl2vajpf7ycw37vr7fbw2png1a67mvjjkgx7d1k7dg"; + }) + ]; + + goDeps = ./deps.nix; + + outputs = [ "out" ]; + + nativeBuildInputs = [ + pkgconfig + dbus-factory + go-dbus-factory + go-gir-generator + go-lib + deepin-gettext-tools + dde-api + linux-pam + networkmanager + networkmanager.dev + python3Packages.python + ]; + + buildInputs = [ + alsaLib + glib + gnome3.libgudev + gtk3 + hicolor-icon-theme + libinput + libnl + librsvg + pulseaudio + ]; + + postPatch = '' + patchShebangs . + + sed -i network/nm_generator/Makefile -e 's,/usr/share/gir-1.0/NM-1.0.gir,${networkmanager.dev}/share/gir-1.0/NM-1.0.gir,' + + sed -i -e "s|{DESTDIR}/etc|{DESTDIR}$out/etc|" Makefile + sed -i -e "s|{DESTDIR}/var|{DESTDIR}$out/var|" Makefile + sed -i -e "s|{DESTDIR}/lib|{DESTDIR}$out/lib|" Makefile + + find -type f -exec sed -i -e "s,/usr/lib/deepin-daemon,$out/lib/deepin-daemon," {} + + ''; + + buildPhase = '' + make -C go/src/${goPackagePath} + # compilation of the nm module is failing + #make -C go/src/${goPackagePath}/network/nm_generator gen-nm-code + ''; + + installPhase = '' + make install PREFIX="$out" -C go/src/${goPackagePath} + remove-references-to -t ${go} $out/lib/deepin-daemon/* + ''; + + passthru.updateScript = deepin.updateScript { inherit name; }; + + meta = with stdenv.lib; { + description = "Daemon for handling Deepin Desktop Environment session settings"; + homepage = https://github.com/linuxdeepin/dde-daemon; + license = licenses.gpl3; + platforms = platforms.linux; + maintainers = with maintainers; [ romildo ]; + }; +} diff --git a/pkgs/desktops/deepin/dde-daemon/deps.nix b/pkgs/desktops/deepin/dde-daemon/deps.nix new file mode 100644 index 0000000000000000000000000000000000000000..3d241baa32601e53c96279ef5f8178bc75b6e9e3 --- /dev/null +++ b/pkgs/desktops/deepin/dde-daemon/deps.nix @@ -0,0 +1,111 @@ +# This file was generated by https://github.com/kamilchm/go2nix v1.2.1 +[ + { + goPackagePath = "github.com/alecthomas/template"; + fetch = { + type = "git"; + url = "https://github.com/alecthomas/template"; + rev = "a0175ee3bccc567396460bf5acd36800cb10c49c"; + sha256 = "0qjgvvh26vk1cyfq9fadyhfgdj36f1iapbmr5xp6zqipldz8ffxj"; + }; + } + { + goPackagePath = "github.com/alecthomas/units"; + fetch = { + type = "git"; + url = "https://github.com/alecthomas/units"; + rev = "2efee857e7cfd4f3d0138cc3cbb1b4966962b93a"; + sha256 = "1j65b91qb9sbrml9cpabfrcf07wmgzzghrl7809hjjhrmbzri5bl"; + }; + } + { + goPackagePath = "github.com/axgle/mahonia"; + fetch = { + type = "git"; + url = "https://github.com/axgle/mahonia"; + rev = "3358181d7394e26beccfae0ffde05193ef3be33a"; + sha256 = "0b8wsrxmv8a0cqbnsg55lpf29pxy2zw8azvgh3ck664lqpcfybhq"; + }; + } + { + goPackagePath = "github.com/cryptix/wav"; + fetch = { + type = "git"; + url = "https://github.com/cryptix/wav"; + rev = "8bdace674401f0bd3b63c65479b6a6ff1f9d5e44"; + sha256 = "18nyqv0ic35fs9fny8sj84c00vbxs8mnric6vr6yl42624fh5id6"; + }; + } + { + goPackagePath = "github.com/linuxdeepin/go-x11-client"; + fetch = { + type = "git"; + url = "https://github.com/linuxdeepin/go-x11-client"; + rev = "03541136501cab4910ad8852fe749ef8e18907ca"; + sha256 = "1iiw8qclpklim81hz1sdjp2ajw0ljvjz19n9jly86nbw6m8x4gkp"; + }; + } + { + goPackagePath = "github.com/msteinert/pam"; + fetch = { + type = "git"; + url = "https://github.com/msteinert/pam"; + rev = "f4cd9f5e29232537a12db1678f48c702ad6896b7"; + sha256 = "1vjawxswy3f23v4d72kk95y3b557580670ai9ffvrwy6wy85qync"; + }; + } + { + goPackagePath = "github.com/nfnt/resize"; + fetch = { + type = "git"; + url = "https://github.com/nfnt/resize"; + rev = "83c6a9932646f83e3267f353373d47347b6036b2"; + sha256 = "005cpiwq28krbjf0zjwpfh63rp4s4is58700idn24fs3g7wdbwya"; + }; + } + { + goPackagePath = "golang.org/x/image"; + fetch = { + type = "git"; + url = "https://go.googlesource.com/image"; + rev = "69cc3646b96e61de0b417f4815b86c36e65783ee"; + sha256 = "0nkywb3r0qvwkmykpswnf0svxi463ycn293y5jjididzxv9qxdp9"; + }; + } + { + goPackagePath = "golang.org/x/net"; + fetch = { + type = "git"; + url = "https://go.googlesource.com/net"; + rev = "c44066c5c816ec500d459a2a324a753f78531ae0"; + sha256 = "0mgww74bl15d0jvsh4f3qr1ckjzb8icb8hn0mgs5ppa0b2fgpc4f"; + }; + } + { + goPackagePath = "golang.org/x/text"; + fetch = { + type = "git"; + url = "https://go.googlesource.com/text"; + rev = "6f44c5a2ea40ee3593d98cdcc905cc1fdaa660e2"; + sha256 = "00mwzxly5isgf0glz7k3k2dkyqkjfc4z55qxajx4lgcp3h8xn9xj"; + }; + } + { + goPackagePath = "gopkg.in/alecthomas/kingpin.v2"; + fetch = { + type = "git"; + url = "https://gopkg.in/alecthomas/kingpin.v2"; + rev = "947dcec5ba9c011838740e680966fd7087a71d0d"; + sha256 = "0mndnv3hdngr3bxp7yxfd47cas4prv98sqw534mx7vp38gd88n5r"; + }; + } + { + goPackagePath = "pkg.deepin.io/lib"; + fetch = { + type = "git"; + url = "https://github.com/linuxdeepin/go-lib.git"; + rev = "b199d0dc96e979398ea3985334ccf9c20236d1a7"; + sha256 = "0g84v1adnnyqc1mv45n3wlvnivkm1fi8ywszzgwx8irl3iddfvxv"; + }; + } +] diff --git a/pkgs/desktops/deepin/dde-polkit-agent/default.nix b/pkgs/desktops/deepin/dde-polkit-agent/default.nix deleted file mode 100644 index 71f9e9b0298ee49a2d020c2795e56fc6c96f7dd6..0000000000000000000000000000000000000000 --- a/pkgs/desktops/deepin/dde-polkit-agent/default.nix +++ /dev/null @@ -1,46 +0,0 @@ -{ stdenv, fetchFromGitHub, pkgconfig, qmake, qttools, polkit-qt, -dtkcore, dtkwidget, dde-qt-dbus-factory }: - -stdenv.mkDerivation rec { - name = "${pname}-${version}"; - pname = "dde-polkit-agent"; - version = "0.2.1"; - - src = fetchFromGitHub { - owner = "linuxdeepin"; - repo = pname; - rev = version; - sha256 = "1n3hys5hhhd99ycpx4im6ihy53vl9c28z7ls7smn117h3ca4c8wc"; - }; - - nativeBuildInputs = [ - pkgconfig - qmake - qttools - ]; - - buildInputs = [ - dde-qt-dbus-factory - dtkcore - dtkwidget - polkit-qt - ]; - - postPatch = '' - patchShebangs . - - sed -i dde-polkit-agent.pro polkit-dde-authentication-agent-1.desktop \ - -e "s,/usr,$out," - - sed -i pluginmanager.cpp \ - -e "s,/usr/lib/polkit-1-dde/plugins,/run/current-system/sw/lib/polkit-1-dde/plugins," - ''; - - meta = with stdenv.lib; { - description = "PolicyKit agent for Deepin Desktop Environment"; - homepage = https://github.com/linuxdeepin/dde-polkit-agent; - license = licenses.gpl3; - platforms = platforms.linux; - maintainers = with maintainers; [ romildo ]; - }; -} diff --git a/pkgs/desktops/deepin/dde-qt-dbus-factory/default.nix b/pkgs/desktops/deepin/dde-qt-dbus-factory/default.nix index 007d58b3c3048dad0c09512911bf4c71be127e02..f28d8f77b3c3e48d7733cf475c7fb43edb5d0229 100644 --- a/pkgs/desktops/deepin/dde-qt-dbus-factory/default.nix +++ b/pkgs/desktops/deepin/dde-qt-dbus-factory/default.nix @@ -1,15 +1,15 @@ -{ stdenv, fetchFromGitHub, pkgconfig, qmake, python }: +{ stdenv, fetchFromGitHub, pkgconfig, qmake, python, deepin }: stdenv.mkDerivation rec { name = "${pname}-${version}"; pname = "dde-qt-dbus-factory"; - version = "1.0.4"; + version = "1.0.5"; src = fetchFromGitHub { owner = "linuxdeepin"; repo = pname; rev = version; - sha256 = "0j0f57byzlz2ixgj6qr1pda83bpwn2q8kxv4i2jv99n6g0qw4nmw"; + sha256 = "0cz55hsbhy1ab1mndv0sp6xnqrhz2y66w7pcxy8v9k87ii32czf8"; }; nativeBuildInputs = [ @@ -24,6 +24,8 @@ stdenv.mkDerivation rec { enableParallelBuilding = true; + passthru.updateScript = deepin.updateScript { inherit name; }; + meta = with stdenv.lib; { description = "Qt DBus interface library for Deepin software"; homepage = https://github.com/linuxdeepin/dde-qt-dbus-factory; diff --git a/pkgs/desktops/deepin/dde-session-ui/default.nix b/pkgs/desktops/deepin/dde-session-ui/default.nix index cab3aff1404858e464358779729591422f94f717..303c4db57dd16da6e62800310c32a1868b518e5e 100644 --- a/pkgs/desktops/deepin/dde-session-ui/default.nix +++ b/pkgs/desktops/deepin/dde-session-ui/default.nix @@ -1,18 +1,18 @@ { stdenv, fetchFromGitHub, pkgconfig, qmake, qtsvg, qttools, qtx11extras, xkeyboard_config, xorg, lightdm_qt, gsettings-qt, dde-qt-dbus-factory, deepin-gettext-tools, dtkcore, dtkwidget, - hicolor-icon-theme }: + hicolor-icon-theme, deepin }: stdenv.mkDerivation rec { name = "${pname}-${version}"; pname = "dde-session-ui"; - version = "4.5.1.10"; + version = "4.6.1"; src = fetchFromGitHub { owner = "linuxdeepin"; repo = pname; rev = version; - sha256 = "0cr3g9jbgpp8k41i86lr4pg88gn690nzili7ah745vf1kdwvi1w0"; + sha256 = "190dgrwr5ji2bjndg2bmggpyccdz6pa3acx86yqmxfmirx669w92"; }; nativeBuildInputs = [ @@ -45,11 +45,13 @@ stdenv.mkDerivation rec { find -type f -exec sed -i -e "s,Exec=/usr,Exec=$out," {} + find -type f -exec sed -i -e "s,/usr/share/dde-session-ui,$out/share/dde-session-ui," {} + sed -i global_util/xkbparser.h -e "s,/usr/share/X11/xkb/rules/base.xml,${xkeyboard_config}/share/X11/xkb/rules/base.xml," - sed -i lightdm-deepin-greeter/Scripts/lightdm-deepin-greeter -e "s,/usr/bin/lightdm-deepin-greeter,$out/bin/lightdm-deepin-greeter," + sed -i lightdm-deepin-greeter/scripts/lightdm-deepin-greeter -e "s,/usr/bin/lightdm-deepin-greeter,$out/bin/lightdm-deepin-greeter," # fix default background url sed -i widgets/*.cpp boxframe/*.cpp -e 's,/usr/share/backgrounds/default_background.jpg,/usr/share/backgrounds/deepin/desktop.jpg,' ''; + passthru.updateScript = deepin.updateScript { inherit name; }; + meta = with stdenv.lib; { description = "Deepin desktop-environment - Session UI module"; homepage = https://github.com/linuxdeepin/dde-session-ui; diff --git a/pkgs/desktops/deepin/deepin-desktop-base/default.nix b/pkgs/desktops/deepin/deepin-desktop-base/default.nix index 5b96e335c67e05937a2a3e1a1657f543f7b2fc7e..80a368c5be99c684c93e9fcc9d441512f4a8772a 100644 --- a/pkgs/desktops/deepin/deepin-desktop-base/default.nix +++ b/pkgs/desktops/deepin/deepin-desktop-base/default.nix @@ -1,15 +1,15 @@ -{ stdenv, fetchFromGitHub, deepin-wallpapers }: +{ stdenv, fetchFromGitHub, deepin-wallpapers, deepin }: stdenv.mkDerivation rec { name = "${pname}-${version}"; pname = "deepin-desktop-base"; - version = "2018.7.23"; + version = "2018.10.29"; src = fetchFromGitHub { owner = "linuxdeepin"; repo = pname; rev = version; - sha256 = "1n1bjkvhgq138jcg3zkwg55r41056x91mh191mirlpvpic574ydc"; + sha256 = "0l2zb7rpag2q36lqsgvirhjgmj7w243nsi1rywkypf2xm7g2v235"; }; buildInputs = [ deepin-wallpapers ]; @@ -35,6 +35,8 @@ stdenv.mkDerivation rec { ln -s ../lib/deepin/desktop-version $out/etc/deepin-version ''; + passthru.updateScript = deepin.updateScript { inherit name; }; + meta = with stdenv.lib; { description = "Base assets and definitions for Deepin Desktop Environment"; homepage = https://github.com/linuxdeepin/deepin-desktop-base; diff --git a/pkgs/desktops/deepin/deepin-desktop-schemas/default.nix b/pkgs/desktops/deepin/deepin-desktop-schemas/default.nix index b1a9c52014b8b2246e41254a13f350c238ae8fb5..d2b70ec4a896b98119d79edc1a727db235d6e606 100644 --- a/pkgs/desktops/deepin/deepin-desktop-schemas/default.nix +++ b/pkgs/desktops/deepin/deepin-desktop-schemas/default.nix @@ -1,16 +1,17 @@ { stdenv, fetchFromGitHub, python, deepin-gtk-theme, -deepin-icon-theme, deepin-sound-theme, deepin-wallpapers, gnome3 }: + deepin-icon-theme, deepin-sound-theme, deepin-wallpapers, gnome3, + deepin }: stdenv.mkDerivation rec { name = "${pname}-${version}"; pname = "deepin-desktop-schemas"; - version = "3.2.18.7"; + version = "3.4.0"; src = fetchFromGitHub { owner = "linuxdeepin"; repo = pname; rev = version; - sha256 = "1siv28wbfjydr3s9k9i5b9fin39yr8ys90f3wi7b8rfm3cr5yy6j"; + sha256 = "10x0rh9z925yzyp8h0vgmg4313smvran06lvr12c3931qkmkzwgq"; }; nativeBuildInputs = [ @@ -33,6 +34,8 @@ stdenv.mkDerivation rec { makeFlags = [ "PREFIX=$(out)" ]; + passthru.updateScript = deepin.updateScript { inherit name; }; + meta = with stdenv.lib; { description = "GSettings deepin desktop-wide schemas"; homepage = https://github.com/linuxdeepin/deepin-desktop-schemas; diff --git a/pkgs/desktops/deepin/deepin-gettext-tools/default.nix b/pkgs/desktops/deepin/deepin-gettext-tools/default.nix index e275429b3951c859d0803cf0e8f373e1b0a08792..779fae6a113e3e6be3ff19146c2d12c442d37977 100644 --- a/pkgs/desktops/deepin/deepin-gettext-tools/default.nix +++ b/pkgs/desktops/deepin/deepin-gettext-tools/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchFromGitHub, gettext, python3Packages, perlPackages }: +{ stdenv, fetchFromGitHub, gettext, python3Packages, perlPackages, deepin }: stdenv.mkDerivation rec { name = "${pname}-${version}"; @@ -36,6 +36,8 @@ stdenv.mkDerivation rec { wrapProgram $out/bin/deepin-desktop-ts-convert --set PERL5LIB $PERL5LIB ''; + passthru.updateScript = deepin.updateScript { inherit name; }; + meta = with stdenv.lib; { description = "Deepin Internationalization utilities"; homepage = https://github.com/linuxdeepin/deepin-gettext-tools; diff --git a/pkgs/desktops/deepin/deepin-gtk-theme/default.nix b/pkgs/desktops/deepin/deepin-gtk-theme/default.nix index a36a967719043834f1c0932d6677116ed11cbaad..8d11ca8bf42aef42fa3e3fa1a1688c2d847b7b99 100644 --- a/pkgs/desktops/deepin/deepin-gtk-theme/default.nix +++ b/pkgs/desktops/deepin/deepin-gtk-theme/default.nix @@ -1,25 +1,28 @@ -{ stdenv, fetchFromGitHub, gtk-engine-murrine }: +{ stdenv, fetchFromGitHub, gtk-engine-murrine, deepin }: stdenv.mkDerivation rec { - name = "deepin-gtk-theme-${version}"; - version = "17.10.8"; + name = "${pname}-${version}"; + pname = "deepin-gtk-theme"; + version = "17.10.10"; src = fetchFromGitHub { owner = "linuxdeepin"; repo = "deepin-gtk-theme"; rev = version; - sha256 = "1z5f5dnda18gixkjcxpvsavhv9m5l2kq61958fdfm1idi0cbr7fp"; + sha256 = "0vwly24cvjwhvda7g3l595vpf99d2z7b2zr0q5kna4df4iql7vn4"; }; propagatedUserEnvPkgs = [ gtk-engine-murrine ]; makeFlags = [ "PREFIX=$(out)" ]; - meta = { + passthru.updateScript = deepin.updateScript { inherit name; }; + + meta = with stdenv.lib; { description = "Deepin GTK Theme"; homepage = https://github.com/linuxdeepin/deepin-gtk-theme; - license = stdenv.lib.licenses.lgpl3; - platforms = stdenv.lib.platforms.unix; - maintainers = [ stdenv.lib.maintainers.romildo ]; + license = licenses.lgpl3; + platforms = platforms.unix; + maintainers = [ maintainers.romildo ]; }; } diff --git a/pkgs/desktops/deepin/deepin-icon-theme/default.nix b/pkgs/desktops/deepin/deepin-icon-theme/default.nix index c6d7f3493019633116e9754cb635fcfae17262ca..ef45742060197957f1df56524fe03dd4ec0354b4 100644 --- a/pkgs/desktops/deepin/deepin-icon-theme/default.nix +++ b/pkgs/desktops/deepin/deepin-icon-theme/default.nix @@ -1,15 +1,15 @@ -{ stdenv, fetchFromGitHub, gtk3, papirus-icon-theme }: +{ stdenv, fetchFromGitHub, gtk3, papirus-icon-theme, deepin }: stdenv.mkDerivation rec { name = "${pname}-${version}"; pname = "deepin-icon-theme"; - version = "15.12.59"; + version = "15.12.64"; src = fetchFromGitHub { owner = "linuxdeepin"; repo = pname; rev = version; - sha256 = "1qkxhqx6a7pahkjhf6m9lm16lw9v9grk0d4j449h9622zwfjkxlq"; + sha256 = "0z1yrp6yg2hb67azrbd9ac743jjh83vxdf2j0mmv2lfpd4fqw8qc"; }; nativeBuildInputs = [ gtk3 papirus-icon-theme ]; @@ -24,6 +24,8 @@ stdenv.mkDerivation rec { sed -i -e 's|\(-rm -f .*/icon-theme.cache\)|# \1|g' Makefile ''; + passthru.updateScript = deepin.updateScript { inherit name; }; + meta = with stdenv.lib; { description = "Icons for the Deepin Desktop Environment"; homepage = https://github.com/linuxdeepin/deepin-icon-theme; diff --git a/pkgs/desktops/deepin/deepin-image-viewer/default.nix b/pkgs/desktops/deepin/deepin-image-viewer/default.nix index 0ba2e306110a8bfc98ade92e5d005e057db4381d..0b08f7cd39a0879d5eae2e2c35a6019905e8499d 100644 --- a/pkgs/desktops/deepin/deepin-image-viewer/default.nix +++ b/pkgs/desktops/deepin/deepin-image-viewer/default.nix @@ -1,18 +1,18 @@ { stdenv, fetchFromGitHub, pkgconfig, qmake, qttools, qtsvg, qtx11extras, dtkcore, dtkwidget, qt5integration, freeimage, libraw, - libexif + libexif, deepin }: stdenv.mkDerivation rec { name = "${pname}-${version}"; pname = "deepin-image-viewer"; - version = "1.2.23"; + version = "1.3.1"; src = fetchFromGitHub { owner = "linuxdeepin"; repo = pname; rev = version; - sha256 = "1n1b3j65in6v7q5bxgkiam8qy56kjn9prld3sjrbc2mqzff8sm3q"; + sha256 = "0dxdvm6hzj6izfxka35za8y7vacd06nksfgzx6xsv7ywzagri4k5"; }; nativeBuildInputs = [ @@ -41,11 +41,14 @@ stdenv.mkDerivation rec { -e "s,/usr,$out," ''; + passthru.updateScript = deepin.updateScript { inherit name; }; + meta = with stdenv.lib; { description = "Image Viewer for Deepin Desktop Environment"; homepage = https://github.com/linuxdeepin/deepin-image-viewer; license = licenses.gpl3Plus; platforms = platforms.linux; + badPlatforms = [ "aarch64-linux" ]; # See https://github.com/NixOS/nixpkgs/pull/46463#issuecomment-420274189 maintainers = with maintainers; [ romildo ]; }; } diff --git a/pkgs/desktops/deepin/deepin-menu/default.nix b/pkgs/desktops/deepin/deepin-menu/default.nix index eeed3579f459a70fa1f60bc2d230613c0dabe798..9ac61355c75bb3169780f31d505c1968b07ba250 100644 --- a/pkgs/desktops/deepin/deepin-menu/default.nix +++ b/pkgs/desktops/deepin/deepin-menu/default.nix @@ -1,5 +1,5 @@ { stdenv, fetchFromGitHub, pkgconfig, qmake, dtkcore, dtkwidget, - qt5integration }: + qt5integration, deepin }: stdenv.mkDerivation rec { name = "${pname}-${version}"; @@ -30,6 +30,8 @@ stdenv.mkDerivation rec { enableParallelBuilding = true; + passthru.updateScript = deepin.updateScript { inherit name; }; + meta = with stdenv.lib; { description = "Deepin menu service"; homepage = https://github.com/linuxdeepin/deepin-menu; diff --git a/pkgs/desktops/deepin/deepin-metacity/default.nix b/pkgs/desktops/deepin/deepin-metacity/default.nix index b5eb711087630ea7bf59c32c43c2fd7598bc8af1..78b6303188a2a32fc47d30b8cac613d3972e279a 100644 --- a/pkgs/desktops/deepin/deepin-metacity/default.nix +++ b/pkgs/desktops/deepin/deepin-metacity/default.nix @@ -1,6 +1,6 @@ { stdenv, fetchFromGitHub, pkgconfig, intltool, libtool, gnome3, bamf, json-glib, libcanberra-gtk3, libxkbcommon, libstartup_notification, - deepin-wallpapers, deepin-desktop-schemas }: + deepin-wallpapers, deepin-desktop-schemas, deepin }: stdenv.mkDerivation rec { name = "${pname}-${version}"; @@ -52,6 +52,8 @@ stdenv.mkDerivation rec { enableParallelBuilding = true; + passthru.updateScript = deepin.updateScript { inherit name; }; + meta = with stdenv.lib; { description = "2D window manager for Deepin"; homepage = https://github.com/linuxdeepin/deepin-metacity; diff --git a/pkgs/desktops/deepin/deepin-movie-reborn/default.nix b/pkgs/desktops/deepin/deepin-movie-reborn/default.nix index 52a51c0db861d230a26b0256eb4fa93c420838fb..3d195f8f1c0c693ae257d5e695b2fee9e6a54b3e 100644 --- a/pkgs/desktops/deepin/deepin-movie-reborn/default.nix +++ b/pkgs/desktops/deepin/deepin-movie-reborn/default.nix @@ -1,17 +1,17 @@ { stdenv, fetchFromGitHub, cmake, pkgconfig, qttools, qtx11extras, dtkcore, dtkwidget, ffmpeg, ffmpegthumbnailer, mpv, pulseaudio, - libdvdnav, libdvdread, xorg }: + libdvdnav, libdvdread, xorg, deepin }: stdenv.mkDerivation rec { name = "${pname}-${version}"; pname = "deepin-movie-reborn"; - version = "3.2.10"; + version = "3.2.14"; src = fetchFromGitHub { owner = "linuxdeepin"; repo = pname; rev = version; - sha256 = "0lqmbvl9yyxgkiipd9r8mgmxl2sm34l3gr3hkwlc7r2l6kc32933"; + sha256 = "1i9sdg2p6qp57rqzrnjbxnqj3mg1qggzyq3yykw271vs8h85a707"; }; nativeBuildInputs = [ @@ -43,6 +43,8 @@ stdenv.mkDerivation rec { sed -i src/libdmr/libdmr.pc.in -e "s,/usr,$out," -e 's,libdir=''${prefix}/,libdir=,' ''; + passthru.updateScript = deepin.updateScript { inherit name; }; + meta = with stdenv.lib; { description = "Deepin movie player"; homepage = https://github.com/linuxdeepin/deepin-movie-reborn; diff --git a/pkgs/desktops/deepin/deepin-mutter/default.nix b/pkgs/desktops/deepin/deepin-mutter/default.nix index e397ab53576d3d39b7192a34e64a62b4915e166a..be845d3c6bacc17a7780bcdb869f3ce493356972 100644 --- a/pkgs/desktops/deepin/deepin-mutter/default.nix +++ b/pkgs/desktops/deepin/deepin-mutter/default.nix @@ -1,18 +1,17 @@ { stdenv, fetchFromGitHub, pkgconfig, intltool, libtool, gnome3, xorg, libcanberra-gtk3, upower, xkeyboard_config, libxkbcommon, - libstartup_notification, libinput, cogl, clutter, systemd -}: + libstartup_notification, libinput, cogl, clutter, systemd, deepin }: stdenv.mkDerivation rec { name = "${pname}-${version}"; pname = "deepin-mutter"; - version = "3.20.34"; + version = "3.20.35"; src = fetchFromGitHub { owner = "linuxdeepin"; repo = pname; rev = version; - sha256 = "0s427fmj806ljpdg6jdvpfislk5m1xvxpnnyrq3l8b7pkhjvp8wd"; + sha256 = "0mwk06kgw8qp8rg1j6px1zlya4x5rr9llax0qks59j56b3m9yim7"; }; nativeBuildInputs = [ @@ -51,6 +50,8 @@ stdenv.mkDerivation rec { NOCONFIGURE=1 ./autogen.sh ''; + passthru.updateScript = deepin.updateScript { inherit name; }; + meta = with stdenv.lib; { description = "Base window manager for deepin, fork of gnome mutter"; homepage = https://github.com/linuxdeepin/deepin-mutter; diff --git a/pkgs/desktops/deepin/deepin-shortcut-viewer/default.nix b/pkgs/desktops/deepin/deepin-shortcut-viewer/default.nix index 1bb112b76f6e4102fffffd216ecc4a300bcbe9ab..737c99261f9d28161e074657eba922997910cedb 100644 --- a/pkgs/desktops/deepin/deepin-shortcut-viewer/default.nix +++ b/pkgs/desktops/deepin/deepin-shortcut-viewer/default.nix @@ -1,6 +1,5 @@ { stdenv, fetchFromGitHub, pkgconfig, qmake, dtkcore, dtkwidget, - qt5integration -}: + qt5integration, deepin }: stdenv.mkDerivation rec { name = "${pname}-${version}"; @@ -27,6 +26,8 @@ stdenv.mkDerivation rec { enableParallelBuilding = true; + passthru.updateScript = deepin.updateScript { inherit name; }; + meta = with stdenv.lib; { description = "Pop-up shortcut viewer for Deepin applications"; homepage = https://github.com/linuxdeepin/deepin-shortcut-viewer; diff --git a/pkgs/desktops/deepin/deepin-sound-theme/default.nix b/pkgs/desktops/deepin/deepin-sound-theme/default.nix index f12419a615b358aecf92d0eec426e62fd842e608..bb004372497f6d3fdfdccff14f0b8c513a4150e3 100644 --- a/pkgs/desktops/deepin/deepin-sound-theme/default.nix +++ b/pkgs/desktops/deepin/deepin-sound-theme/default.nix @@ -1,7 +1,8 @@ -{ stdenv, fetchFromGitHub }: +{ stdenv, fetchFromGitHub, deepin }: stdenv.mkDerivation rec { - name = "deepin-sound-theme-${version}"; + name = "${pname}-${version}"; + pname = "deepin-sound-theme"; version = "15.10.3"; src = fetchFromGitHub { @@ -13,6 +14,8 @@ stdenv.mkDerivation rec { makeFlags = [ "PREFIX=$(out)" ]; + passthru.updateScript = deepin.updateScript { inherit name; }; + meta = with stdenv.lib; { description = "Deepin sound theme"; homepage = https://github.com/linuxdeepin/deepin-sound-theme; diff --git a/pkgs/desktops/deepin/deepin-terminal/default.nix b/pkgs/desktops/deepin/deepin-terminal/default.nix index 26146b8ab4778c9170273fd5c0cc319acf7abeef..de5ac800747afe7cb29399316fe11c4b11b8fe56 100644 --- a/pkgs/desktops/deepin/deepin-terminal/default.nix +++ b/pkgs/desktops/deepin/deepin-terminal/default.nix @@ -1,55 +1,61 @@ -{ stdenv, fetchurl, fetchFromGitHub, pkgconfig, gtk3, vala, cmake, - ninja, vte, libgee, wnck, zssh, gettext, librsvg, libsecret, - json-glib, gobjectIntrospection, deepin-menu, deepin-shortcut-viewer -}: +{ stdenv, fetchurl, fetchFromGitHub, pkgconfig, cmake, ninja, vala, + gettext, gobjectIntrospection, at-spi2-core, dbus, epoxy, expect, + gtk3, json-glib, libXdmcp, libgee, libpthreadstubs, librsvg, + libsecret, libtasn1, libxcb, libxkbcommon, p11-kit, pcre, vte, wnck, + deepin-menu, deepin-shortcut-viewer, deepin }: stdenv.mkDerivation rec { - name = "deepin-terminal-${version}"; - version = "3.0.3"; + name = "${pname}-${version}"; + pname = "deepin-terminal"; + version = "3.0.10"; src = fetchFromGitHub { owner = "linuxdeepin"; repo = "deepin-terminal"; rev = version; - sha256 = "04yvim97a4j8fq5lq2g6svs8qs79np9m4nl6x83iv02wkb9b7gqa"; + sha256 = "1jrzx0igq2csb25k4ak5hj81gpvb7zwbg4i64p4mln4vl7x27i5q"; }; - patches = [ - # Do not build vendored zssh and vte - (fetchurl { - name = "remove-vendor.patch"; - url = https://git.archlinux.org/svntogit/community.git/plain/trunk/remove-vendor.patch?h=packages/deepin-terminal&id=de701614c19c273b98b60fd6790795ff7d8a157e; - sha256 = "0g7hhvr7ay9g0cgc6qqvzhbcwvbzvrrilbn8w46ypfzj7w5hlkqv"; - }) - ]; - - postPatch = '' - substituteInPlace ssh_login.sh --replace /usr/lib/deepin-terminal/zssh "${zssh}/bin/zssh" - ''; - nativeBuildInputs = [ pkgconfig - vala cmake ninja + vala gettext gobjectIntrospection # For setup hook ]; buildInputs = [ + at-spi2-core + dbus + deepin-menu + deepin-shortcut-viewer + epoxy + expect gtk3 - vte + json-glib + libXdmcp libgee - wnck + libpthreadstubs librsvg libsecret - json-glib - deepin-menu - deepin-shortcut-viewer + libtasn1 + libxcb + libxkbcommon + p11-kit + pcre + vte + wnck ]; + postPatch = '' + patchShebangs . + ''; + enableParallelBuilding = true; + passthru.updateScript = deepin.updateScript { inherit name; }; + meta = with stdenv.lib; { description = "The default terminal emulation for Deepin"; longDescription = '' diff --git a/pkgs/desktops/deepin/deepin-wallpapers/default.nix b/pkgs/desktops/deepin/deepin-wallpapers/default.nix index ed2c795fd9cbb53423d9517f943cf2ddee26cfc9..8f04bd482184cc0b5edf9802565a2f2e19132cf9 100644 --- a/pkgs/desktops/deepin/deepin-wallpapers/default.nix +++ b/pkgs/desktops/deepin/deepin-wallpapers/default.nix @@ -1,7 +1,8 @@ -{ stdenv, fetchFromGitHub, dde-api }: +{ stdenv, fetchFromGitHub, dde-api, deepin }: stdenv.mkDerivation rec { - name = "deepin-wallpapers-${version}"; + name = "${pname}-${version}"; + pname = "deepin-wallpapers"; version = "1.7.5"; src = fetchFromGitHub { @@ -31,6 +32,8 @@ stdenv.mkDerivation rec { $out/var/cache/image-blur/$(echo -n $out/share/backgrounds/deepin/desktop.jpg | md5sum | cut -d " " -f 1).jpg ''; + passthru.updateScript = deepin.updateScript { inherit name; }; + meta = with stdenv.lib; { description = "Wallpapers for Deepin Desktop Environment"; homepage = https://github.com/linuxdeepin/deepin-wallpapers; diff --git a/pkgs/desktops/deepin/deepin-wm/default.nix b/pkgs/desktops/deepin/deepin-wm/default.nix index f936934dcc0ca25478aa69d84abd8fce1c7a4119..db60e7b499b0dfc7b3044fad4c2c85e5831041d9 100644 --- a/pkgs/desktops/deepin/deepin-wm/default.nix +++ b/pkgs/desktops/deepin/deepin-wm/default.nix @@ -1,18 +1,18 @@ { stdenv, fetchFromGitHub, pkgconfig, intltool, libtool, vala, gnome3, bamf, clutter-gtk, granite, libcanberra-gtk3, libwnck3, deepin-mutter, deepin-wallpapers, deepin-desktop-schemas, - hicolor-icon-theme }: + hicolor-icon-theme, deepin }: stdenv.mkDerivation rec { name = "${pname}-${version}"; pname = "deepin-wm"; - version = "1.9.32"; + version = "1.9.33"; src = fetchFromGitHub { owner = "linuxdeepin"; repo = pname; rev = version; - sha256 = "02vwbkfpxcwv01vqa70pg7dm0lhm1lwhdqhk057r147a9cjb3ssc"; + sha256 = "01l2np31g7fnh61fgq927h7a6xrmdvagqd41vr29a6cc3q9q9rzv"; }; nativeBuildInputs = [ @@ -48,6 +48,8 @@ stdenv.mkDerivation rec { enableParallelBuilding = true; + passthru.updateScript = deepin.updateScript { inherit name; }; + meta = with stdenv.lib; { description = "Deepin Window Manager"; homepage = https://github.com/linuxdeepin/deepin-wm; diff --git a/pkgs/desktops/deepin/default.nix b/pkgs/desktops/deepin/default.nix index 86e5fc37fa54ad053170c8b3c79bc83556fb589a..62a67c11492b7c9f4271d5c897053af7364d2b95 100644 --- a/pkgs/desktops/deepin/default.nix +++ b/pkgs/desktops/deepin/default.nix @@ -2,11 +2,12 @@ let packages = self: with self; { + updateScript = callPackage ./update.nix { }; dbus-factory = callPackage ./dbus-factory { }; dde-api = callPackage ./dde-api { }; dde-calendar = callPackage ./dde-calendar { }; - dde-polkit-agent = callPackage ./dde-polkit-agent { }; + dde-daemon = callPackage ./dde-daemon { }; dde-qt-dbus-factory = callPackage ./dde-qt-dbus-factory { }; dde-session-ui = callPackage ./dde-session-ui { }; deepin-desktop-base = callPackage ./deepin-desktop-base { }; @@ -27,7 +28,6 @@ let }; deepin-wallpapers = callPackage ./deepin-wallpapers { }; deepin-wm = callPackage ./deepin-wm { }; - dpa-ext-gnomekeyring = callPackage ./dpa-ext-gnomekeyring { }; dtkcore = callPackage ./dtkcore { }; dtkwm = callPackage ./dtkwm { }; dtkwidget = callPackage ./dtkwidget { }; diff --git a/pkgs/desktops/deepin/dpa-ext-gnomekeyring/default.nix b/pkgs/desktops/deepin/dpa-ext-gnomekeyring/default.nix deleted file mode 100644 index 4aeba1b4c1bcb1916349fbc5cc4e48c1428008e4..0000000000000000000000000000000000000000 --- a/pkgs/desktops/deepin/dpa-ext-gnomekeyring/default.nix +++ /dev/null @@ -1,40 +0,0 @@ -{ stdenv, fetchFromGitHub, pkgconfig, qmake, qttools, gnome3, dde-polkit-agent }: - -stdenv.mkDerivation rec { - name = "${pname}-${version}"; - pname = "dpa-ext-gnomekeyring"; - version = "0.1.0"; - - src = fetchFromGitHub { - owner = "linuxdeepin"; - repo = pname; - rev = version; - sha256 = "168j42nwyw7vcgwc0fha2pjpwwlgir70fq1hns4ia1dkdqa1nhzw"; - }; - - nativeBuildInputs = [ - pkgconfig - qmake - qttools - ]; - - buildInputs = [ - dde-polkit-agent - gnome3.libgnome-keyring - ]; - - postPatch = '' - patchShebangs . - - sed -i dpa-ext-gnomekeyring.pro gnomekeyringextention.cpp \ - -e "s,/usr,$out," - ''; - - meta = with stdenv.lib; { - description = "GNOME keyring extension for dde-polkit-agent"; - homepage = https://github.com/linuxdeepin/dpa-ext-gnomekeyring; - license = licenses.gpl3; - platforms = platforms.linux; - maintainers = with maintainers; [ romildo ]; - }; -} diff --git a/pkgs/desktops/deepin/dtkcore/default.nix b/pkgs/desktops/deepin/dtkcore/default.nix index 3fc9a1b4a03efaded1480fc61617eeb2a3b9171a..9904c58128f51721c10e98b3470f81a865819e13 100644 --- a/pkgs/desktops/deepin/dtkcore/default.nix +++ b/pkgs/desktops/deepin/dtkcore/default.nix @@ -1,15 +1,15 @@ -{ stdenv, fetchFromGitHub, pkgconfig, qmake, gsettings-qt, pythonPackages }: +{ stdenv, fetchFromGitHub, pkgconfig, qmake, gsettings-qt, pythonPackages, deepin }: stdenv.mkDerivation rec { name = "${pname}-${version}"; pname = "dtkcore"; - version = "2.0.9.4"; + version = "2.0.9.8"; src = fetchFromGitHub { owner = "linuxdeepin"; repo = pname; rev = version; - sha256 = "184yg1501hvv7n1c7r0fl2y4d4nhif368rrbrd1phwzfvh6x1ji4"; + sha256 = "06jj5gpy2qbmc21nf0fnbvgw7nbjjgvzx7m2vg9byw5il8l4g22h"; }; nativeBuildInputs = [ @@ -42,6 +42,8 @@ stdenv.mkDerivation rec { enableParallelBuilding = true; + passthru.updateScript = deepin.updateScript { inherit name; }; + meta = with stdenv.lib; { description = "Deepin tool kit core modules"; homepage = https://github.com/linuxdeepin/dtkcore; diff --git a/pkgs/desktops/deepin/dtkwidget/default.nix b/pkgs/desktops/deepin/dtkwidget/default.nix index 268f9518495edb641af68e9020df8577cbfceb5d..16125efff8e2d59b1542750bdf05ef033766f5a9 100644 --- a/pkgs/desktops/deepin/dtkwidget/default.nix +++ b/pkgs/desktops/deepin/dtkwidget/default.nix @@ -1,18 +1,17 @@ { stdenv, fetchFromGitHub, pkgconfig, qmake, qttools, qtmultimedia, qtsvg, qtx11extras, librsvg, libstartup_notification, gsettings-qt, - dde-qt-dbus-factory, dtkcore -}: + dde-qt-dbus-factory, dtkcore, deepin }: stdenv.mkDerivation rec { name = "${pname}-${version}"; pname = "dtkwidget"; - version = "2.0.9.4"; + version = "2.0.9.9"; src = fetchFromGitHub { owner = "linuxdeepin"; repo = pname; rev = version; - sha256 = "06iyb3ryxrqkwxdazpv8cgabqa4djldgm3q5icsa2grqrgy8vw5m"; + sha256 = "1h4vm6a4lb6w6nkx2ns7a526mqyi9hqi7j5lqafd7ycwxlrc64nb"; }; nativeBuildInputs = [ @@ -41,6 +40,8 @@ stdenv.mkDerivation rec { enableParallelBuilding = true; + passthru.updateScript = deepin.updateScript { inherit name; }; + meta = with stdenv.lib; { description = "Deepin graphical user interface library"; homepage = https://github.com/linuxdeepin/dtkwidget; diff --git a/pkgs/desktops/deepin/dtkwm/default.nix b/pkgs/desktops/deepin/dtkwm/default.nix index 46ed7bcc3beff0d9b8243821a3d56697d6985841..7154ae3da6a9f4f4eb93e1a47b756455c7ef29ba 100644 --- a/pkgs/desktops/deepin/dtkwm/default.nix +++ b/pkgs/desktops/deepin/dtkwm/default.nix @@ -1,4 +1,5 @@ -{ stdenv, fetchFromGitHub, pkgconfig, qmake, qtx11extras, dtkcore }: +{ stdenv, fetchFromGitHub, pkgconfig, qmake, qtx11extras, dtkcore, + deepin }: stdenv.mkDerivation rec { name = "${pname}-${version}"; @@ -29,6 +30,8 @@ stdenv.mkDerivation rec { LIB_INSTALL_DIR=$out/lib" ''; + passthru.updateScript = deepin.updateScript { inherit name; }; + meta = with stdenv.lib; { description = "Deepin graphical user interface library"; homepage = https://github.com/linuxdeepin/dtkwm; diff --git a/pkgs/desktops/deepin/go-dbus-factory/default.nix b/pkgs/desktops/deepin/go-dbus-factory/default.nix index a488bd7202cbe269f0234b3abfb6dfeffdaa4581..01d504eda896f6de1797b0779c2e2530c425a43b 100644 --- a/pkgs/desktops/deepin/go-dbus-factory/default.nix +++ b/pkgs/desktops/deepin/go-dbus-factory/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchFromGitHub }: +{ stdenv, fetchFromGitHub, deepin }: stdenv.mkDerivation rec { name = "${pname}-${version}"; @@ -12,9 +12,13 @@ stdenv.mkDerivation rec { sha256 = "0gj2xxv45gh7wr5ry3mcsi46kdsyq9nbd7znssn34kapiv40ixcx"; }; - makeFlags = [ - "PREFIX=$(out)" - ]; + makeFlags = [ "PREFIX=$(out)" ]; + + postPatch = '' + sed -i -e 's:/share/gocode:/share/go:' Makefile + ''; + + passthru.updateScript = deepin.updateScript { inherit name; }; meta = with stdenv.lib; { description = "GoLang DBus factory for the Deepin Desktop Environment"; diff --git a/pkgs/desktops/deepin/go-dbus-generator/default.nix b/pkgs/desktops/deepin/go-dbus-generator/default.nix index 2933c58f8d95f582d7936f80e9d1567d0aeebe74..28873d8459ecd593ca7ebfdf24abf6e32b198c14 100644 --- a/pkgs/desktops/deepin/go-dbus-generator/default.nix +++ b/pkgs/desktops/deepin/go-dbus-generator/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchFromGitHub, go, go-lib }: +{ stdenv, fetchFromGitHub, go, go-lib, deepin }: stdenv.mkDerivation rec { name = "${pname}-${version}"; @@ -19,10 +19,11 @@ stdenv.mkDerivation rec { makeFlags = [ "PREFIX=$(out)" - "GOPATH=$(GGOPATH):${go-lib}/share/gocode" - "HOME=$(TMP)" + "GOCACHE=off" ]; + passthru.updateScript = deepin.updateScript { inherit name; }; + meta = with stdenv.lib; { description = "Convert dbus interfaces to go-lang or qml wrapper code"; homepage = https://github.com/linuxdeepin/go-dbus-generator; diff --git a/pkgs/desktops/deepin/go-gir-generator/default.nix b/pkgs/desktops/deepin/go-gir-generator/default.nix index d5ec29f1ef8bad72f02865ca909e95d14517d9ad..183ae58fecd0f6fa42f40ba089c335316a1983d7 100644 --- a/pkgs/desktops/deepin/go-gir-generator/default.nix +++ b/pkgs/desktops/deepin/go-gir-generator/default.nix @@ -1,15 +1,16 @@ -{ stdenv, fetchFromGitHub, pkgconfig, go, gobjectIntrospection, libgudev }: +{ stdenv, fetchFromGitHub, pkgconfig, go, gobjectIntrospection, + libgudev, deepin }: stdenv.mkDerivation rec { name = "${pname}-${version}"; pname = "go-gir-generator"; - version = "1.0.4"; + version = "1.1.0"; src = fetchFromGitHub { owner = "linuxdeepin"; repo = pname; rev = version; - sha256 = "0yi3lsgkxi8ghz2c7msf2df20jxkvzj8s47slvpzz4m57i82vgzl"; + sha256 = "0grp4ffy3vmlknzmymnxq1spwshff2ylqsw82pj4y2v2fcvnqfvb"; }; nativeBuildInputs = [ @@ -31,6 +32,8 @@ stdenv.mkDerivation rec { "GOCACHE=off" ]; + passthru.updateScript = deepin.updateScript { inherit name; }; + meta = with stdenv.lib; { description = "Generate static golang bindings for GObject"; homepage = https://github.com/linuxdeepin/go-gir-generator; diff --git a/pkgs/desktops/deepin/go-lib/default.nix b/pkgs/desktops/deepin/go-lib/default.nix index 44de8889df28a22581a03ee3fc152e7026e4349c..684f1dd7f32daadd5423501638eb688e0a1f588e 100644 --- a/pkgs/desktops/deepin/go-lib/default.nix +++ b/pkgs/desktops/deepin/go-lib/default.nix @@ -1,17 +1,16 @@ { stdenv, fetchFromGitHub, glib, xorg, gdk_pixbuf, pulseaudio, - mobile-broadband-provider-info -}: + mobile-broadband-provider-info, deepin }: stdenv.mkDerivation rec { name = "${pname}-${version}"; pname = "go-lib"; - version = "1.2.16.1"; + version = "1.3.0"; src = fetchFromGitHub { owner = "linuxdeepin"; repo = pname; rev = version; - sha256 = "0nl35dm0bdca38qhnzdpsv6b0vds9ccvm4c86rs42a7c6v655b1q"; + sha256 = "0g84v1adnnyqc1mv45n3wlvnivkm1fi8ywszzgwx8irl3iddfvxv"; }; buildInputs = [ @@ -22,7 +21,12 @@ stdenv.mkDerivation rec { mobile-broadband-provider-info ]; - makeFlags = [ "PREFIX=$(out)" ]; + makeFlags = [ + "PREFIX=$(out)" + "GOSITE_DIR=$(out)/share/go" + ]; + + passthru.updateScript = deepin.updateScript { inherit name; }; meta = with stdenv.lib; { description = "Go bindings for Deepin Desktop Environment development"; diff --git a/pkgs/desktops/deepin/qt5dxcb-plugin/default.nix b/pkgs/desktops/deepin/qt5dxcb-plugin/default.nix index 3754de3ea9808910e21385b63aba893f4efb9049..c4ce0ca563bd7828d88cbd5e7d3500c3d94e9364 100644 --- a/pkgs/desktops/deepin/qt5dxcb-plugin/default.nix +++ b/pkgs/desktops/deepin/qt5dxcb-plugin/default.nix @@ -1,15 +1,16 @@ -{ stdenv, fetchFromGitHub, pkgconfig, qmake, qtx11extras, libSM, mtdev, cairo }: +{ stdenv, fetchFromGitHub, pkgconfig, qmake, qtx11extras, libSM, + mtdev, cairo, deepin }: stdenv.mkDerivation rec { name = "${pname}-${version}"; pname = "qt5dxcb-plugin"; - version = "1.1.11"; + version = "1.1.13"; src = fetchFromGitHub { owner = "linuxdeepin"; repo = pname; rev = version; - sha256 = "157p2cqs9fvd4n4fmxj6mh4cxlc35bkl4rnf832wk2gvjnxdfrfy"; + sha256 = "12lvh3agw3qdviqf32brmzba5kscnj5al5jhc08lq69a9kmip05x"; }; nativeBuildInputs = [ @@ -30,6 +31,8 @@ stdenv.mkDerivation rec { enableParallelBuilding = true; + passthru.updateScript = deepin.updateScript { inherit name; }; + meta = with stdenv.lib; { description = "Qt platform theme integration plugin for DDE"; homepage = https://github.com/linuxdeepin/qt5dxcb-plugin; diff --git a/pkgs/desktops/deepin/qt5integration/default.nix b/pkgs/desktops/deepin/qt5integration/default.nix index 28e06bae42d29b75b7fbd752add6c3fe473d9d87..8091563772252205da90e5fca61a9750b21db733 100644 --- a/pkgs/desktops/deepin/qt5integration/default.nix +++ b/pkgs/desktops/deepin/qt5integration/default.nix @@ -1,18 +1,17 @@ -{ stdenv, fetchFromGitHub, pkgconfig, qmake, mtdev, gsettings-qt -, lxqt, qtx11extras, qtmultimedia, qtsvg, fontconfig, freetype -, qt5dxcb-plugin, qtstyleplugins, dtkcore, dtkwidget -}: +{ stdenv, fetchFromGitHub, pkgconfig, qmake, mtdev, gsettings-qt , + lxqt, qtx11extras, qtmultimedia, qtsvg, fontconfig, freetype , + qt5dxcb-plugin, qtstyleplugins, dtkcore, dtkwidget, deepin }: stdenv.mkDerivation rec { name = "${pname}-${version}"; pname = "qt5integration"; - version = "0.3.5"; + version = "0.3.6"; src = fetchFromGitHub { owner = "linuxdeepin"; repo = pname; rev = version; - sha256 = "0qf9ndsg8pz2n68y68a30d1hxr3ri8k4j00dxlbcf5cn5mbnny1b"; + sha256 = "1v9whlqn07c5c8xnaiicdshj9n88a667gfbn8y8bk5bfylilfzcy"; }; nativeBuildInputs = [ @@ -42,6 +41,8 @@ stdenv.mkDerivation rec { enableParallelBuilding = true; + passthru.updateScript = deepin.updateScript { inherit name; }; + meta = with stdenv.lib; { description = "Qt platform theme integration plugins for DDE"; homepage = https://github.com/linuxdeepin/qt5integration; diff --git a/pkgs/desktops/deepin/update.nix b/pkgs/desktops/deepin/update.nix new file mode 100644 index 0000000000000000000000000000000000000000..761ead015c6b6505cc5e57753e5775a90b4b8544 --- /dev/null +++ b/pkgs/desktops/deepin/update.nix @@ -0,0 +1,37 @@ +{ lib, writeScript, coreutils, curl, gnugrep, gnused, jq, common-updater-scripts, nix }: +{ name, ignored-versions ? "^2014\\.|^v[0-9]+" }: + +let + nameAndVersion = builtins.parseDrvName name; + packageVersion = nameAndVersion.version; + packageName = nameAndVersion.name; + attrPath = "deepin.${packageName}"; +in + +writeScript "update-${packageName}" '' + set -o errexit + set -x + + # search for the latest version of the package on github + PATH=${lib.makeBinPath [ common-updater-scripts coreutils curl gnugrep gnused jq ]} + tags=$(curl -s https://api.github.com/repos/linuxdeepin/${packageName}/tags) + tags=$(echo "$tags" | jq -r '.[] | .name') + echo "# ${name}" >> git-commits.txt + echo "# available tags:" >> git-commits.txt + echo "$tags" | ${gnused}/bin/sed -e 's/^/# /' >> git-commits.txt + if [ -n "${ignored-versions}" ]; then + tags=$(echo "$tags" | grep -vE "${ignored-versions}") + fi + latest_tag=$(echo "$tags" | sort --version-sort | tail -1) + + # generate commands to commit the changes + if [ "${packageVersion}" != "$latest_tag" ]; then + pfile=$(EDITOR=echo ${nix}/bin/nix edit -f. ${attrPath}) + echo " git add $pfile " >> git-commits.txt + echo " git commit -m \"${attrPath}: ${packageVersion} -> $latest_tag\"" >> git-commits.txt + fi + + # update the nix expression + update-source-version "${attrPath}" "$latest_tag" + echo "" >> git-commits.txt +'' diff --git a/pkgs/desktops/enlightenment/efl.nix b/pkgs/desktops/enlightenment/efl.nix index bc58302cb20f57012c1b5d10271a9a2fc67e8f5e..93d80d76352441c46e25f81920888655c856f075 100644 --- a/pkgs/desktops/enlightenment/efl.nix +++ b/pkgs/desktops/enlightenment/efl.nix @@ -3,7 +3,7 @@ , libsndfile, xorg, libdrm, libxkbcommon, udev, utillinux, bullet, luajit , python27Packages, openjpeg, doxygen, expat, harfbuzz, jbig2dec, librsvg , dbus, alsaLib, poppler, ghostscript, libraw, libspectre, xineLib, libwebp -, curl, libinput, systemd, mesa_noglu, writeText +, curl, libinput, systemd, mesa_noglu, writeText, gtk3 }: stdenv.mkDerivation rec { @@ -15,7 +15,7 @@ stdenv.mkDerivation rec { sha256 = "0a5907h896pvpix7a6idc2fspzy6d78xrzf84k8y9fyvnd14nxs4"; }; - nativeBuildInputs = [ pkgconfig ]; + nativeBuildInputs = [ pkgconfig gtk3 ]; buildInputs = [ openssl zlib lz4 freetype fontconfig SDL libGL mesa_noglu giflib libpng libtiff glib gst_all_1.gstreamer gst_all_1.gst-plugins-base gst_all_1.gst-plugins-good @@ -71,6 +71,9 @@ stdenv.mkDerivation rec { modules=$(for i in "$out/include/"*/; do printf ' -I''${includedir}/'`basename $i`; done) substituteInPlace "$out/lib/pkgconfig/efl.pc" --replace 'Cflags: -I''${includedir}/efl-1' \ 'Cflags: -I''${includedir}/eina-1/eina'"$modules" + + # build icon cache + gtk-update-icon-cache "$out"/share/icons/Enlightenment-X ''; # EFL applications depend on libcurl, although it is linked at diff --git a/pkgs/desktops/gnome-3/core/gnome-themes-extra/default.nix b/pkgs/desktops/gnome-3/core/gnome-themes-extra/default.nix index d42797300e614104395182ff1780a7c7d45cbc26..b6c40b28ab1a88d3aeaa5eb4d38a85f3ff516f92 100644 --- a/pkgs/desktops/gnome-3/core/gnome-themes-extra/default.nix +++ b/pkgs/desktops/gnome-3/core/gnome-themes-extra/default.nix @@ -21,6 +21,10 @@ in stdenv.mkDerivation rec { nativeBuildInputs = [ pkgconfig intltool ]; buildInputs = [ gtk3 librsvg pango atk gtk2 gdk_pixbuf gnome3.defaultIconTheme ]; + postFixup = '' + gtk-update-icon-cache "$out"/share/icons/HighContrast + ''; + meta = with stdenv.lib; { platforms = platforms.linux; maintainers = gnome3.maintainers; diff --git a/pkgs/desktops/gnome-3/core/mutter/default.nix b/pkgs/desktops/gnome-3/core/mutter/default.nix index a08e0fd3cd1a6037b982cbc2e3bf867790049239..34830117b777502aa6d09c5b90bb42a239a7e0b0 100644 --- a/pkgs/desktops/gnome-3/core/mutter/default.nix +++ b/pkgs/desktops/gnome-3/core/mutter/default.nix @@ -1,7 +1,7 @@ { fetchurl, stdenv, pkgconfig, gnome3, intltool, gobjectIntrospection, upower, cairo , pango, cogl, clutter, libstartup_notification, zenity, libcanberra-gtk3 , libtool, makeWrapper, xkeyboard_config, libxkbfile, libxkbcommon, libXtst, libinput -, pipewire, libgudev, libwacom, xwayland, autoreconfHook }: +, pipewire, libgudev, libwacom, xwayland, autoreconfHook, fetchpatch }: stdenv.mkDerivation rec { name = "mutter-${version}"; @@ -16,6 +16,14 @@ stdenv.mkDerivation rec { updateScript = gnome3.updateScript { packageName = "mutter"; attrPath = "gnome3.mutter"; }; }; + patches = [ + # https://gitlab.gnome.org/GNOME/mutter/merge_requests/172 + (fetchpatch { + url = https://gitlab.gnome.org/GNOME/mutter/commit/62660bbd.patch; + sha256 = "1qq8vxlqnyrqh94dc0dh1aj1dsbyw6bwv3x46q5vsscbbxbiv9wk"; + }) + ]; + configureFlags = [ "--with-x" "--disable-static" diff --git a/pkgs/desktops/gnustep/libobjc2/default.nix b/pkgs/desktops/gnustep/libobjc2/default.nix index a3e718187c7f9fd04380e95399fe2333a6832ee6..3aba235b3a796c5b1e5a4d442171839142ecef3b 100644 --- a/pkgs/desktops/gnustep/libobjc2/default.nix +++ b/pkgs/desktops/gnustep/libobjc2/default.nix @@ -24,5 +24,6 @@ stdenv.mkDerivation rec { license = licenses.mit; maintainers = with maintainers; [ ashalkhakov matthewbauer ]; platforms = platforms.unix; + badPlatforms = [ "aarch64-linux" ]; }; } diff --git a/pkgs/desktops/mate/mate-icon-theme-faenza/default.nix b/pkgs/desktops/mate/mate-icon-theme-faenza/default.nix index 2d868d2e0821f86d98991fcf8b8eada58e620141..03f8c62c448d50199b1792d14d00ccf6cefc2705 100644 --- a/pkgs/desktops/mate/mate-icon-theme-faenza/default.nix +++ b/pkgs/desktops/mate/mate-icon-theme-faenza/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchurl, autoreconfHook, mate, hicolor-icon-theme }: +{ stdenv, fetchurl, autoreconfHook, gtk3, mate, hicolor-icon-theme }: stdenv.mkDerivation rec { name = "mate-icon-theme-faenza-${version}"; @@ -9,10 +9,16 @@ stdenv.mkDerivation rec { sha256 = "000vr9cnbl2qlysf2gyg1lsjirqdzmwrnh6d3hyrsfc0r2vh4wna"; }; - nativeBuildInputs = [ autoreconfHook ]; + nativeBuildInputs = [ autoreconfHook gtk3 ]; buildInputs = [ mate.mate-icon-theme hicolor-icon-theme ]; - + + postInstall = '' + for theme in "$out"/share/icons/*; do + gtk-update-icon-cache "$theme" + done + ''; + meta = { description = "Faenza icon theme from MATE"; homepage = http://mate-desktop.org; diff --git a/pkgs/desktops/mate/mate-themes/default.nix b/pkgs/desktops/mate/mate-themes/default.nix index 44d07231d2eb06203ac89b756fe034ac760bb610..58feb32cfa8c1013a9b9114fba8152cddba0939c 100644 --- a/pkgs/desktops/mate/mate-themes/default.nix +++ b/pkgs/desktops/mate/mate-themes/default.nix @@ -1,5 +1,5 @@ -{ stdenv, fetchurl, pkgconfig, intltool, mate, gtk2, gtk_engines, - gtk-engine-murrine, gdk_pixbuf, librsvg }: +{ stdenv, fetchurl, pkgconfig, intltool, mate, gtk2, gtk3, + gtk_engines, gtk-engine-murrine, gdk_pixbuf, librsvg }: stdenv.mkDerivation rec { name = "mate-themes-${version}"; @@ -10,12 +10,16 @@ stdenv.mkDerivation rec { sha256 = "0538bw8qismp16ymxbjk0ww7yjw1ch5v3f3d4vib3770xvgmmcfm"; }; - nativeBuildInputs = [ pkgconfig intltool ]; + nativeBuildInputs = [ pkgconfig intltool gtk3 ]; buildInputs = [ mate.mate-icon-theme gtk2 gtk_engines gdk_pixbuf librsvg ]; propagatedUserEnvPkgs = [ gtk-engine-murrine ]; + postInstall = '' + gtk-update-icon-cache "$out"/share/icons/ContrastHigh + ''; + meta = { description = "A set of themes from MATE"; homepage = http://mate-desktop.org; diff --git a/pkgs/desktops/maxx/default.nix b/pkgs/desktops/maxx/default.nix index 10fa745d9787ecfc9584406a43451ecd08367d1b..6f515068418ed8eff3f418bbbb6d9387dc3b08a2 100644 --- a/pkgs/desktops/maxx/default.nix +++ b/pkgs/desktops/maxx/default.nix @@ -18,11 +18,11 @@ in stdenv.mkDerivation { srcs = [ (fetchurl { - url = "http://maxxinteractive.com/downloads/${version}/FEDORA/MaXX-${version}-NO-ARCH.tar.gz"; + url = "http://maxxdesktop.arcadedaydream.com/Indy-Releases/Installers/MaXX-${version}-NO-ARCH.tar.gz"; sha256 = "1d23j08wwrrn5cp7csv70pcz9jppcn0xb1894wkp0caaliy7g31y"; }) (fetchurl { - url = "http://maxxinteractive.com/downloads/${version}/FEDORA/MaXX-${version}-x86_64.tar.gz"; + url = "http://maxxdesktop.arcadedaydream.com/Indy-Releases/Installers/MaXX-${version}-x86_64.tar.gz"; sha256 = "156p2lra184wyvibrihisd7cr1ivqaygsf0zfm26a12gx23b7708"; }) ]; diff --git a/pkgs/desktops/plasma-5/fetch.sh b/pkgs/desktops/plasma-5/fetch.sh index 64907e6271d8050bcbdd9be7f4332cc1c76a7aaf..312691dcc7efc257e126733cdbfe6eaf97372519 100644 --- a/pkgs/desktops/plasma-5/fetch.sh +++ b/pkgs/desktops/plasma-5/fetch.sh @@ -1 +1 @@ -WGET_ARGS=( https://download.kde.org/stable/plasma/5.14.0/ -A '*.tar.xz' ) +WGET_ARGS=( https://download.kde.org/stable/plasma/5.14.3/ -A '*.tar.xz' ) diff --git a/pkgs/desktops/plasma-5/srcs.nix b/pkgs/desktops/plasma-5/srcs.nix index 690f5fafef27690dae266cfecaa8d19d2ee5c321..a4d90aa7e3d78764cab1701c84883b4e30105144 100644 --- a/pkgs/desktops/plasma-5/srcs.nix +++ b/pkgs/desktops/plasma-5/srcs.nix @@ -3,363 +3,363 @@ { bluedevil = { - version = "5.14.0"; + version = "5.14.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.14.0/bluedevil-5.14.0.tar.xz"; - sha256 = "0d1bw6cp2vwhs17j0bgc3gysy3g2syb1z0zwg28sa889l8a3qyv9"; - name = "bluedevil-5.14.0.tar.xz"; + url = "${mirror}/stable/plasma/5.14.3/bluedevil-5.14.3.tar.xz"; + sha256 = "048iyzps89caw6dr1x767byj8a7gcg9vl1fvnndabkhm3d71cgxk"; + name = "bluedevil-5.14.3.tar.xz"; }; }; breeze = { - version = "5.14.0"; + version = "5.14.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.14.0/breeze-5.14.0.tar.xz"; - sha256 = "0gd95a7km0pqc0qinn2p0kv72j0ihdl96vs14f5jr5n78a2r7r9a"; - name = "breeze-5.14.0.tar.xz"; + url = "${mirror}/stable/plasma/5.14.3/breeze-5.14.3.tar.xz"; + sha256 = "19wm6krcnyis1vgs655jynvgm93k776drvjra4ysy378d2n3f1w6"; + name = "breeze-5.14.3.tar.xz"; }; }; breeze-grub = { - version = "5.14.0"; + version = "5.14.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.14.0/breeze-grub-5.14.0.tar.xz"; - sha256 = "17kghx9qv7flm2019alqg1a6pnacgczj1hc9sc0bvj8znh9hhxvh"; - name = "breeze-grub-5.14.0.tar.xz"; + url = "${mirror}/stable/plasma/5.14.3/breeze-grub-5.14.3.tar.xz"; + sha256 = "1nkf4av6xdx7q8z6hq0gdsmm38z5xawh1awpcjwc61dd8n55bn8a"; + name = "breeze-grub-5.14.3.tar.xz"; }; }; breeze-gtk = { - version = "5.14.0"; + version = "5.14.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.14.0/breeze-gtk-5.14.0.tar.xz"; - sha256 = "1zlhyv26k3zqm2bbd9mk7123q5xy5g2cp6ayavhglgxxb8n0zyx9"; - name = "breeze-gtk-5.14.0.tar.xz"; + url = "${mirror}/stable/plasma/5.14.3/breeze-gtk-5.14.3.tar.xz"; + sha256 = "000w368cvyi8whbrp500jjcrdivm2fl7kwcn81fj8ydk7wn5pmyn"; + name = "breeze-gtk-5.14.3.tar.xz"; }; }; breeze-plymouth = { - version = "5.14.0"; + version = "5.14.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.14.0/breeze-plymouth-5.14.0.tar.xz"; - sha256 = "1ilf3cp7cg3lpkxvd8n7h33wvsbbikrvd514gan2ns16j9d4ziz1"; - name = "breeze-plymouth-5.14.0.tar.xz"; + url = "${mirror}/stable/plasma/5.14.3/breeze-plymouth-5.14.3.tar.xz"; + sha256 = "0fd8d5hwkhrd3n9ahfw99anh43azi28n5wh47ncrwdy7m81v4lgx"; + name = "breeze-plymouth-5.14.3.tar.xz"; }; }; discover = { - version = "5.14.0"; + version = "5.14.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.14.0/discover-5.14.0.tar.xz"; - sha256 = "1chkf5hjpnb4laq5sn7rr8f4fv90mg4brdsx71cz1b5xbvgyy1sf"; - name = "discover-5.14.0.tar.xz"; + url = "${mirror}/stable/plasma/5.14.3/discover-5.14.3.tar.xz"; + sha256 = "12zx6p68yq5mhv459wy7y2f90nmw3n0n9l7xpb6g7k5ssmr1jqk4"; + name = "discover-5.14.3.tar.xz"; }; }; drkonqi = { - version = "5.14.0"; + version = "5.14.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.14.0/drkonqi-5.14.0.tar.xz"; - sha256 = "0i5zgafkdxw6wqqfw81ygdmg5fffy2gkf6sciq7f8nfxxglw6pkp"; - name = "drkonqi-5.14.0.tar.xz"; + url = "${mirror}/stable/plasma/5.14.3/drkonqi-5.14.3.tar.xz"; + sha256 = "11k8mf45rjrqxb3pny96x6pz50x9hglpaspsmjz9w19b2drxg79i"; + name = "drkonqi-5.14.3.tar.xz"; }; }; kactivitymanagerd = { - version = "5.14.0"; + version = "5.14.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.14.0/kactivitymanagerd-5.14.0.tar.xz"; - sha256 = "03jxvf4mgh0wmphykskc8ra49ghrjv5in4mgzpafswn7w8q8gyii"; - name = "kactivitymanagerd-5.14.0.tar.xz"; + url = "${mirror}/stable/plasma/5.14.3/kactivitymanagerd-5.14.3.tar.xz"; + sha256 = "0ham0p2zrjx47g12fad2gci56jiq5x57vgnpr29pypqrc3hqwsn5"; + name = "kactivitymanagerd-5.14.3.tar.xz"; }; }; kde-cli-tools = { - version = "5.14.0"; + version = "5.14.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.14.0/kde-cli-tools-5.14.0.tar.xz"; - sha256 = "1n51vaiy073jzs051wlpll7652bb7vwg5qmravndhl8ibqrv7qaz"; - name = "kde-cli-tools-5.14.0.tar.xz"; + url = "${mirror}/stable/plasma/5.14.3/kde-cli-tools-5.14.3.tar.xz"; + sha256 = "1ld4rhmjbm6xz5xri8r1zs4lr2d443372h7pqjs1hc3r836aivwa"; + name = "kde-cli-tools-5.14.3.tar.xz"; }; }; kdecoration = { - version = "5.14.0"; + version = "5.14.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.14.0/kdecoration-5.14.0.tar.xz"; - sha256 = "01gkl0yqplm1l2qa4gfw7rzi5zfdxq7d3a25qicdwhas69hc8nzm"; - name = "kdecoration-5.14.0.tar.xz"; + url = "${mirror}/stable/plasma/5.14.3/kdecoration-5.14.3.tar.xz"; + sha256 = "0sifflfdz3md5ymlpkzp2pvccfr0gzw8dx87j1s5qk1b04fx9vg8"; + name = "kdecoration-5.14.3.tar.xz"; }; }; kde-gtk-config = { - version = "5.14.0"; + version = "5.14.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.14.0/kde-gtk-config-5.14.0.tar.xz"; - sha256 = "0mb1am14hd3x5gkmy3vcg3wb9g29c8y38ywhr0f93riphws0nhvh"; - name = "kde-gtk-config-5.14.0.tar.xz"; + url = "${mirror}/stable/plasma/5.14.3/kde-gtk-config-5.14.3.tar.xz"; + sha256 = "1m0vhgwm5zrk7sg4j71qmn2gsm5qhhgvcdpgryc64kjdk24lss31"; + name = "kde-gtk-config-5.14.3.tar.xz"; }; }; kdeplasma-addons = { - version = "5.14.0"; + version = "5.14.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.14.0/kdeplasma-addons-5.14.0.tar.xz"; - sha256 = "0k98ms851z2naw4rjmxldy6pl9a51mmwvq6c4znm2pnrw04jz15d"; - name = "kdeplasma-addons-5.14.0.tar.xz"; + url = "${mirror}/stable/plasma/5.14.3/kdeplasma-addons-5.14.3.tar.xz"; + sha256 = "1rw84wfym722z6cl127gwma9npjzy0yj65fzr9rqpplks8il6m4m"; + name = "kdeplasma-addons-5.14.3.tar.xz"; }; }; kgamma5 = { - version = "5.14.0"; + version = "5.14.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.14.0/kgamma5-5.14.0.tar.xz"; - sha256 = "17vb1bb4glw6ccd1s1chjm07lvpkklcvny7rdjgmz2r00vk6mjqy"; - name = "kgamma5-5.14.0.tar.xz"; + url = "${mirror}/stable/plasma/5.14.3/kgamma5-5.14.3.tar.xz"; + sha256 = "03r866icbnk5q11zpnkxg3azcgbr6fp16b8mmsw7j4jl820shv4q"; + name = "kgamma5-5.14.3.tar.xz"; }; }; khotkeys = { - version = "5.14.0"; + version = "5.14.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.14.0/khotkeys-5.14.0.tar.xz"; - sha256 = "0b2q4s0j6wji8112l89347fc8ph9vrf2p8ngig0c4dn4ayk7hqd1"; - name = "khotkeys-5.14.0.tar.xz"; + url = "${mirror}/stable/plasma/5.14.3/khotkeys-5.14.3.tar.xz"; + sha256 = "1arsjvxw7q6434y3c8l458ilmynqbdb30sdvfzgrlk19m1dqmkym"; + name = "khotkeys-5.14.3.tar.xz"; }; }; kinfocenter = { - version = "5.14.0"; + version = "5.14.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.14.0/kinfocenter-5.14.0.tar.xz"; - sha256 = "0pc1jc7d26w2asa2yj8rr04rgjvmavlyhw3wd0dqv08rhr0rl7pj"; - name = "kinfocenter-5.14.0.tar.xz"; + url = "${mirror}/stable/plasma/5.14.3/kinfocenter-5.14.3.tar.xz"; + sha256 = "1kapxxb4f4lia7yr4jmx83y0vwn6m1hrij05p5d1axy90jwmcy37"; + name = "kinfocenter-5.14.3.tar.xz"; }; }; kmenuedit = { - version = "5.14.0"; + version = "5.14.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.14.0/kmenuedit-5.14.0.tar.xz"; - sha256 = "0ld9q5jq7zc6kz72pg9qqg10rbargkwyks657cnv8id1pna17bsr"; - name = "kmenuedit-5.14.0.tar.xz"; + url = "${mirror}/stable/plasma/5.14.3/kmenuedit-5.14.3.tar.xz"; + sha256 = "0yikz8v3gawkbn1vds7i9xj2j4p1y8nv0adrhr4vwdii2ar37jvd"; + name = "kmenuedit-5.14.3.tar.xz"; }; }; kscreen = { - version = "5.14.0"; + version = "5.14.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.14.0/kscreen-5.14.0.tar.xz"; - sha256 = "1y28a96kal2gziga2vr6vg5swv2ynfiv3804n06v9847rd7s3ixk"; - name = "kscreen-5.14.0.tar.xz"; + url = "${mirror}/stable/plasma/5.14.3/kscreen-5.14.3.tar.xz"; + sha256 = "0jn2d5373agh5b47v7xd17apbkpbrvl5z7x3n83k4q4j30q7pgs3"; + name = "kscreen-5.14.3.tar.xz"; }; }; kscreenlocker = { - version = "5.14.0"; + version = "5.14.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.14.0/kscreenlocker-5.14.0.tar.xz"; - sha256 = "1nyd8jy4ngpg51nq46cx038i4w1qak9zi4d4v69blkhzd65gckj1"; - name = "kscreenlocker-5.14.0.tar.xz"; + url = "${mirror}/stable/plasma/5.14.3/kscreenlocker-5.14.3.tar.xz"; + sha256 = "1zn99zsn07fm4npf7l6n243bnn970pb818pfpbw9kgwjlh0nyms8"; + name = "kscreenlocker-5.14.3.tar.xz"; }; }; ksshaskpass = { - version = "5.14.0"; + version = "5.14.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.14.0/ksshaskpass-5.14.0.tar.xz"; - sha256 = "0nqvr3z7058hfymw8gglnfmcxx976km6sf0msyd3ykfpymxsmz74"; - name = "ksshaskpass-5.14.0.tar.xz"; + url = "${mirror}/stable/plasma/5.14.3/ksshaskpass-5.14.3.tar.xz"; + sha256 = "1gh5hakc2i7m2scvf8nyrl8inkh1fsrggdydiwb02mg763lkk9nc"; + name = "ksshaskpass-5.14.3.tar.xz"; }; }; ksysguard = { - version = "5.14.0"; + version = "5.14.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.14.0/ksysguard-5.14.0.tar.xz"; - sha256 = "0hbcx20r57lfh566q2974rs2kzlq5ghxadnd1ghiwz5141xh02bm"; - name = "ksysguard-5.14.0.tar.xz"; + url = "${mirror}/stable/plasma/5.14.3/ksysguard-5.14.3.tar.xz"; + sha256 = "1aw8r4ngq00lv0d38iddwdhlmmv97qiwqjvgzy4m20dfm7ldaldp"; + name = "ksysguard-5.14.3.tar.xz"; }; }; kwallet-pam = { - version = "5.14.0"; + version = "5.14.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.14.0/kwallet-pam-5.14.0.tar.xz"; - sha256 = "0cw173wbf105p7028xik33lm38z82b1rlc7090l4khwsgmwgff97"; - name = "kwallet-pam-5.14.0.tar.xz"; + url = "${mirror}/stable/plasma/5.14.3/kwallet-pam-5.14.3.tar.xz"; + sha256 = "109jzfwf9b0c1mm5rq4jgiaf4sxad1wx4j9pmwxr4m17nf3ys5pg"; + name = "kwallet-pam-5.14.3.tar.xz"; }; }; kwayland-integration = { - version = "5.14.0"; + version = "5.14.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.14.0/kwayland-integration-5.14.0.tar.xz"; - sha256 = "19xbqb7m6hxyg8s8jdbg1x9qcfia2ypm0z4k6zgva6mwqwhqcbw1"; - name = "kwayland-integration-5.14.0.tar.xz"; + url = "${mirror}/stable/plasma/5.14.3/kwayland-integration-5.14.3.tar.xz"; + sha256 = "117wvplwxhphk3yiy61dlid5nf42m869qkcsx5mlnjdwxglwgwfj"; + name = "kwayland-integration-5.14.3.tar.xz"; }; }; kwin = { - version = "5.14.0"; + version = "5.14.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.14.0/kwin-5.14.0.tar.xz"; - sha256 = "0rd6hkyg6n0w2jnj648sp7gs7n624igraz8ajyrglfzvxkxvqi8i"; - name = "kwin-5.14.0.tar.xz"; + url = "${mirror}/stable/plasma/5.14.3/kwin-5.14.3.tar.xz"; + sha256 = "0yv8sa96rnaabi29mny17vyxswj4b4rgny75kznqnk6n01wjm4xy"; + name = "kwin-5.14.3.tar.xz"; }; }; kwrited = { - version = "5.14.0"; + version = "5.14.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.14.0/kwrited-5.14.0.tar.xz"; - sha256 = "0s9lgi5a945xzpl1j5gdn65n8bywqlwfnrig56x90550achbvmlq"; - name = "kwrited-5.14.0.tar.xz"; + url = "${mirror}/stable/plasma/5.14.3/kwrited-5.14.3.tar.xz"; + sha256 = "1lzbrifsb9qvn4622rd3b0p5jfr67ql5rsd1lkw1jpib9ckzlrph"; + name = "kwrited-5.14.3.tar.xz"; }; }; libkscreen = { - version = "5.14.0"; + version = "5.14.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.14.0/libkscreen-5.14.0.tar.xz"; - sha256 = "1fsi9cb724kwr0cll60dl9qh67290r3gp8lcsmlyw30zk9mqwgdi"; - name = "libkscreen-5.14.0.tar.xz"; + url = "${mirror}/stable/plasma/5.14.3/libkscreen-5.14.3.tar.xz"; + sha256 = "14zfmycnzf30jgbf1gcyp8kpipvn1w2sd6inrylyyf089565r9ai"; + name = "libkscreen-5.14.3.tar.xz"; }; }; libksysguard = { - version = "5.14.0"; + version = "5.14.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.14.0/libksysguard-5.14.0.tar.xz"; - sha256 = "00s1dkiqykw2drlmvzs3hkdrkbk8n86s751kl4xlvcbslbijzcv0"; - name = "libksysguard-5.14.0.tar.xz"; + url = "${mirror}/stable/plasma/5.14.3/libksysguard-5.14.3.tar.xz"; + sha256 = "099cn9hmz5k10ms3wgskcdps91wmw8r0g52jknnid4ggb7vkpvkr"; + name = "libksysguard-5.14.3.tar.xz"; }; }; milou = { - version = "5.14.0"; + version = "5.14.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.14.0/milou-5.14.0.tar.xz"; - sha256 = "1k413zs70ggsamwxxidlfjdf8aqrcnzznar86z30q3ki1y14xf1l"; - name = "milou-5.14.0.tar.xz"; + url = "${mirror}/stable/plasma/5.14.3/milou-5.14.3.tar.xz"; + sha256 = "16xqshzc4q2c0h9ihgmcqvyh181qacqz7c3amczzf4yc14xcsgxl"; + name = "milou-5.14.3.tar.xz"; }; }; oxygen = { - version = "5.14.0"; + version = "5.14.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.14.0/oxygen-5.14.0.tar.xz"; - sha256 = "0kbafhzjkm61dpznx1w713jwyicj7qq76vk7zf6vz2g90b8c47na"; - name = "oxygen-5.14.0.tar.xz"; + url = "${mirror}/stable/plasma/5.14.3/oxygen-5.14.3.tar.xz"; + sha256 = "1q6xsk9aha6sxq98r28g6wg93ml6hcqd3b73ygrwgncx1rhia446"; + name = "oxygen-5.14.3.tar.xz"; }; }; plasma-browser-integration = { - version = "5.14.0"; + version = "5.14.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.14.0/plasma-browser-integration-5.14.0.tar.xz"; - sha256 = "1s8cxlfyp8crq2j4appffnhc3cgx9igmqhxyyk9pr4jbb4cwv42b"; - name = "plasma-browser-integration-5.14.0.tar.xz"; + url = "${mirror}/stable/plasma/5.14.3/plasma-browser-integration-5.14.3.tar.xz"; + sha256 = "1fzxmrijrwh75ni5g79cy2dj6g6mja9vkgd3hqrbir7hmmrqs8b3"; + name = "plasma-browser-integration-5.14.3.tar.xz"; }; }; plasma-desktop = { - version = "5.14.0"; + version = "5.14.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.14.0/plasma-desktop-5.14.0.tar.xz"; - sha256 = "0qrqd78bp9n73rr142wxiynxij2i8cw41ckgd46iw8an550v8s80"; - name = "plasma-desktop-5.14.0.tar.xz"; + url = "${mirror}/stable/plasma/5.14.3/plasma-desktop-5.14.3.tar.xz"; + sha256 = "0kn2l5ca0pmpfjalnbc53h892hj9kr0xv9070a0i09fn6qn4pxcs"; + name = "plasma-desktop-5.14.3.tar.xz"; }; }; plasma-integration = { - version = "5.14.0"; + version = "5.14.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.14.0/plasma-integration-5.14.0.tar.xz"; - sha256 = "1dv43iwh6rp5ldn16jd6krkab6nmplav47j5qvngcp88src31k47"; - name = "plasma-integration-5.14.0.tar.xz"; + url = "${mirror}/stable/plasma/5.14.3/plasma-integration-5.14.3.tar.xz"; + sha256 = "0iwfkv32s97s459ksbmrk6w3p5qkmg99yiy3prclq73pa7i176x9"; + name = "plasma-integration-5.14.3.tar.xz"; }; }; plasma-nm = { - version = "5.14.0"; + version = "5.14.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.14.0/plasma-nm-5.14.0.tar.xz"; - sha256 = "1pr4dg90vw22jzsrbhzx3rycyj9by8r4239ypprw0i5d9795mian"; - name = "plasma-nm-5.14.0.tar.xz"; + url = "${mirror}/stable/plasma/5.14.3/plasma-nm-5.14.3.tar.xz"; + sha256 = "0sgqb5izlfpk95vjyn65jg9mwidvlranzrdjq5nyyl47pf8nfigf"; + name = "plasma-nm-5.14.3.tar.xz"; }; }; plasma-pa = { - version = "5.14.0"; + version = "5.14.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.14.0/plasma-pa-5.14.0.tar.xz"; - sha256 = "1b95vyirgxfpjrccnl81bynlk3zdxz0bf7czsap0bnwhal0mcp2w"; - name = "plasma-pa-5.14.0.tar.xz"; + url = "${mirror}/stable/plasma/5.14.3/plasma-pa-5.14.3.tar.xz"; + sha256 = "1s1csabc6w9vmi0klckq5kvrfbkv2qn9jv7x8r3v6nx6wibc5y7r"; + name = "plasma-pa-5.14.3.tar.xz"; }; }; plasma-sdk = { - version = "5.14.0"; + version = "5.14.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.14.0/plasma-sdk-5.14.0.tar.xz"; - sha256 = "0b5h7qvan0f5afdf4d19dmpalgbd9gyxgkq3r5h7axqdfdanz38f"; - name = "plasma-sdk-5.14.0.tar.xz"; + url = "${mirror}/stable/plasma/5.14.3/plasma-sdk-5.14.3.tar.xz"; + sha256 = "0sx7a24fzw15dwnlm574z8643sy4kqzcqai1v6l8078smqz4kdqc"; + name = "plasma-sdk-5.14.3.tar.xz"; }; }; plasma-tests = { - version = "5.14.0"; + version = "5.14.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.14.0/plasma-tests-5.14.0.tar.xz"; - sha256 = "01li04p44f1yajnjhvhhqd8mjwv8si5d02749p5dn0x80fkxgh9d"; - name = "plasma-tests-5.14.0.tar.xz"; + url = "${mirror}/stable/plasma/5.14.3/plasma-tests-5.14.3.tar.xz"; + sha256 = "0y975sv202gg68fnv3wycisx642vmb177zl7x9gkk66wdi5958gb"; + name = "plasma-tests-5.14.3.tar.xz"; }; }; plasma-vault = { - version = "5.14.0"; + version = "5.14.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.14.0/plasma-vault-5.14.0.tar.xz"; - sha256 = "1kclryjld7lanimr6n7r1b9y8wqgyjvcsky9cfq3ql1ssfc0ncm3"; - name = "plasma-vault-5.14.0.tar.xz"; + url = "${mirror}/stable/plasma/5.14.3/plasma-vault-5.14.3.tar.xz"; + sha256 = "05l96lnfni2vc92vsxjvzlwh0vd8kacmn1ywp3rwzklwdyzwwbw5"; + name = "plasma-vault-5.14.3.tar.xz"; }; }; plasma-workspace = { - version = "5.14.0"; + version = "5.14.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.14.0/plasma-workspace-5.14.0.tar.xz"; - sha256 = "1fgz06dnszrrq5kqa3zn22cj93adz8vwg9n9vdihgi6c77rqlxyf"; - name = "plasma-workspace-5.14.0.tar.xz"; + url = "${mirror}/stable/plasma/5.14.3/plasma-workspace-5.14.3.tar.xz"; + sha256 = "0mrhlsgckin6n2njr9lmpd84qm515wfdvr4lbhs64dllmqa9c77f"; + name = "plasma-workspace-5.14.3.tar.xz"; }; }; plasma-workspace-wallpapers = { - version = "5.14.0"; + version = "5.14.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.14.0/plasma-workspace-wallpapers-5.14.0.tar.xz"; - sha256 = "10j006wc1l2hjw9s9w7sxwimpahrnlpidnrrdgwjp0fswmnyqj5c"; - name = "plasma-workspace-wallpapers-5.14.0.tar.xz"; + url = "${mirror}/stable/plasma/5.14.3/plasma-workspace-wallpapers-5.14.3.tar.xz"; + sha256 = "09cwydr45bh367jqi31fax459pj0w4cia6y752869hcm0x55m4jb"; + name = "plasma-workspace-wallpapers-5.14.3.tar.xz"; }; }; plymouth-kcm = { - version = "5.14.0"; + version = "5.14.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.14.0/plymouth-kcm-5.14.0.tar.xz"; - sha256 = "0smjnh3adhsbp2ds8gvi5k3jq21i85zvaf9pvr0ih4nqpn4plalk"; - name = "plymouth-kcm-5.14.0.tar.xz"; + url = "${mirror}/stable/plasma/5.14.3/plymouth-kcm-5.14.3.tar.xz"; + sha256 = "0srv7ph43hcyly69d0jydrxncc2hq8xxy0ppm6g8pdyl06q06iag"; + name = "plymouth-kcm-5.14.3.tar.xz"; }; }; polkit-kde-agent = { - version = "1-5.14.0"; + version = "1-5.14.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.14.0/polkit-kde-agent-1-5.14.0.tar.xz"; - sha256 = "0bzz2qmxslmms7mrs4l8myg9byx0w7dz6xrmvi8v11wyk2lngsb0"; - name = "polkit-kde-agent-1-5.14.0.tar.xz"; + url = "${mirror}/stable/plasma/5.14.3/polkit-kde-agent-1-5.14.3.tar.xz"; + sha256 = "05qvwmbaj79m5myb8ah7873diflnqri2j3cwsr4y1i9wyjq2l5bw"; + name = "polkit-kde-agent-1-5.14.3.tar.xz"; }; }; powerdevil = { - version = "5.14.0"; + version = "5.14.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.14.0/powerdevil-5.14.0.tar.xz"; - sha256 = "057hj7c3pq5a064ydx2r6kkf0q8lj7rl0jfrzcpr72s0yri3wcjr"; - name = "powerdevil-5.14.0.tar.xz"; + url = "${mirror}/stable/plasma/5.14.3/powerdevil-5.14.3.tar.xz"; + sha256 = "0css6lrb7bfm4l2piqi6cc28blw45kfxdxrn6q3d30nwb9jhsfj6"; + name = "powerdevil-5.14.3.tar.xz"; }; }; sddm-kcm = { - version = "5.14.0"; + version = "5.14.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.14.0/sddm-kcm-5.14.0.tar.xz"; - sha256 = "0dz6iz0qf4ycfic1ad99cqxj05pa4m92m5l74as8pkqviv8mm33d"; - name = "sddm-kcm-5.14.0.tar.xz"; + url = "${mirror}/stable/plasma/5.14.3/sddm-kcm-5.14.3.tar.xz"; + sha256 = "0f25lyqrjq5kbqjh3bgxlgmfbii0nzgdf3pza8gnbmq8jfx58i5w"; + name = "sddm-kcm-5.14.3.tar.xz"; }; }; systemsettings = { - version = "5.14.0"; + version = "5.14.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.14.0/systemsettings-5.14.0.tar.xz"; - sha256 = "0gywcc1zcqp7613gd7m9811plmmk8hr9frd2v0ari69ppm1ndmpj"; - name = "systemsettings-5.14.0.tar.xz"; + url = "${mirror}/stable/plasma/5.14.3/systemsettings-5.14.3.tar.xz"; + sha256 = "1ks6ib4n1gcmrac9q1cdas1c7xl86cvcz278anrw3ch2dfr7xppc"; + name = "systemsettings-5.14.3.tar.xz"; }; }; user-manager = { - version = "5.14.0"; + version = "5.14.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.14.0/user-manager-5.14.0.tar.xz"; - sha256 = "17qdpdq1j53h49i71ri8f91fby9m47ngpd7gn6qp7gzsfcyqky3j"; - name = "user-manager-5.14.0.tar.xz"; + url = "${mirror}/stable/plasma/5.14.3/user-manager-5.14.3.tar.xz"; + sha256 = "043nc8nlxs6y9fqb2g574l2pjzdlklar9n5v1clrzqmxdrqva0ba"; + name = "user-manager-5.14.3.tar.xz"; }; }; xdg-desktop-portal-kde = { - version = "5.14.0"; + version = "5.14.3"; src = fetchurl { - url = "${mirror}/stable/plasma/5.14.0/xdg-desktop-portal-kde-5.14.0.tar.xz"; - sha256 = "0xziyrrccv0jjjf8h8p5w2wx0qz745ilib1i2l50amy6dwy0k0s9"; - name = "xdg-desktop-portal-kde-5.14.0.tar.xz"; + url = "${mirror}/stable/plasma/5.14.3/xdg-desktop-portal-kde-5.14.3.tar.xz"; + sha256 = "0g0b73ylhl6y7afdk2mxnsd809v6aby7vbw86zf82ymx23lmwg83"; + name = "xdg-desktop-portal-kde-5.14.3.tar.xz"; }; }; } diff --git a/pkgs/desktops/xfce4-13/xfce4-terminal/default.nix b/pkgs/desktops/xfce4-13/xfce4-terminal/default.nix index 5ee6e338ea4b13dcd66ca335b3b7fccb939f10f0..6bc88ee766119f05cd2b5ceae26c43c461c42357 100644 --- a/pkgs/desktops/xfce4-13/xfce4-terminal/default.nix +++ b/pkgs/desktops/xfce4-13/xfce4-terminal/default.nix @@ -1,4 +1,4 @@ -{ mkXfceDerivation, gtk3, libxfce4ui, vte }: +{ mkXfceDerivation, gtk3, libxfce4ui, wrapGAppsHook, vte }: mkXfceDerivation rec { category = "apps"; @@ -8,6 +8,7 @@ mkXfceDerivation rec { sha256 = "1s1dq560icg602jjb2ja58x7hxg4ikp3jrrf74v3qgi0ir950k2y"; buildInputs = [ gtk3 libxfce4ui vte ]; + nativeBuildInputs = [ wrapGAppsHook ]; meta = { description = "A modern terminal emulator"; diff --git a/pkgs/development/arduino/platformio/core.nix b/pkgs/development/arduino/platformio/core.nix index de0585309996fefbebf64d45261d4714beba309a..5489adc5399df3f1228e0ccfd225a69a2ceb534c 100644 --- a/pkgs/development/arduino/platformio/core.nix +++ b/pkgs/development/arduino/platformio/core.nix @@ -1,17 +1,57 @@ -{ stdenv, buildPythonPackage, fetchPypi +{ stdenv, lib, buildPythonApplication, fetchFromGitHub , bottle, click, colorama , lockfile, pyserial, requests -, semantic-version +, pytest, semantic-version, tox , git }: -buildPythonPackage rec { +let + args = lib.concatStringsSep " " ((map (e: "--deselect tests/${e}") [ + "commands/test_ci.py::test_ci_boards" + "commands/test_ci.py::test_ci_project_conf" + "commands/test_ci.py::test_ci_lib_and_board" + "commands/test_init.py::test_init_enable_auto_uploading" + "commands/test_init.py::test_init_custom_framework" + "commands/test_init.py::test_init_incorrect_board" + "commands/test_init.py::test_init_ide_atom" + "commands/test_init.py::test_init_ide_eclipse" + "commands/test_init.py::test_init_duplicated_boards" + "commands/test_init.py::test_init_special_board" + "commands/test_lib.py::test_search" + "commands/test_lib.py::test_install_duplicates" + "commands/test_lib.py::test_global_lib_update_check" + "commands/test_lib.py::test_global_lib_update" + "commands/test_lib.py::test_global_lib_uninstall" + "commands/test_lib.py::test_lib_show" + "commands/test_lib.py::test_lib_stats" + "commands/test_lib.py::test_global_install_registry" + "commands/test_lib.py::test_global_install_archive" + "commands/test_lib.py::test_global_install_repository" + "commands/test_lib.py::test_global_lib_list" + "commands/test_test.py::test_local_env" + "test_builder.py::test_build_flags" + "test_builder.py::test_build_unflags" + "test_misc.py::test_api_cache" + "test_misc.py::test_ping_internet_ips" + "test_pkgmanifest.py::test_packages" + ]) ++ (map (e: "--ignore=tests/${e}") [ + "commands/test_boards.py" + "commands/test_platform.py" + "commands/test_update.py" + "test_maintenance.py" + "test_ino2cpp.py" + ])); + +in buildPythonApplication rec { pname = "platformio"; - version = "3.5.3"; + version = "3.6.1"; - src = fetchPypi { - inherit pname version; - sha256 = "1l4s2xh1p9h767amk9zapzivz4irl2y3kff3dna6icvsgq6rz011"; + # pypi tarball doesn't contain tests + src = fetchFromGitHub { + owner = "platformio"; + repo = "platformio-core"; + rev = "v${version}"; + sha256 = "01xz9figqrzb0m9467q14lg51vmgq0hbaap0xdx08n5v2ycmzj0v"; }; propagatedBuildInputs = [ @@ -19,12 +59,25 @@ buildPythonPackage rec { pyserial requests semantic-version ]; + HOME = "/tmp"; + + checkInputs = [ pytest tox ]; + + checkPhase = '' + runHook preCheck + + py.test -v tests ${args} + + runHook postCheck + ''; + patches = [ ./fix-searchpath.patch ]; meta = with stdenv.lib; { + broken = stdenv.isAarch64; description = "An open source ecosystem for IoT development"; homepage = http://platformio.org; - maintainers = with maintainers; [ mog makefu ]; license = licenses.asl20; + maintainers = with maintainers; [ mog makefu ]; }; } diff --git a/pkgs/development/compilers/adoptopenjdk-bin/jdk11-darwin.nix b/pkgs/development/compilers/adoptopenjdk-bin/jdk11-darwin.nix index 77d9d85aaa93ffef1d903a7acb9926aef8bd1c27..573f5e175ec676bb451e7794a7473bffdfaf2f09 100644 --- a/pkgs/development/compilers/adoptopenjdk-bin/jdk11-darwin.nix +++ b/pkgs/development/compilers/adoptopenjdk-bin/jdk11-darwin.nix @@ -1,26 +1,43 @@ let - version = "11"; - buildNumber = "28"; - baseUrl = "https://github.com/AdoptOpenJDK/openjdk11-binaries/releases/download/jdk-${version}%2B${buildNumber}"; - makePackage = { packageType, vmType, sha256 }: import ./jdk-darwin-base.nix { + makePackage = { version, buildNumber, packageType, vmType, sha256 }: import ./jdk-darwin-base.nix { name = if packageType == "jdk" then "adoptopenjdk-${vmType}-bin-${version}" else "adoptopenjdk-${packageType}-${vmType}-bin-${version}"; - url = "${baseUrl}/OpenJDK${version}-${packageType}_x64_mac_${vmType}_${version}_${buildNumber}.tar.gz"; + + url = "https://github.com/AdoptOpenJDK/openjdk11-binaries/releases/download/jdk-${version}%2B${buildNumber}/OpenJDK11-${packageType}_x64_mac_${vmType}_${version}_${buildNumber}.tar.gz"; + inherit sha256; }; in { jdk-hotspot = makePackage { + version = "11"; + buildNumber = "28"; packageType = "jdk"; vmType = "hotspot"; sha256 = "ca0ec49548c626904061b491cae0a29b9b4b00fb34d8973dc217e10ab21fb0f3"; }; jre-hotspot = makePackage { + version = "11"; + buildNumber = "28"; packageType = "jre"; vmType = "hotspot"; sha256 = "ef4dbfe5aed6ab2278fcc14db6cc73abbaab56e95f6ebb023790a7ebc6d7f30c"; }; + jdk-openj9 = makePackage { + version = "11.0.1"; + buildNumber = "13"; + packageType = "jdk"; + vmType = "openj9"; + sha256 = "c5e9b588b4ac5b0bd5b4edd69d59265d1199bb98af7ca3270e119b264ffb6e3f"; + }; + jre-openj9 = makePackage { + version = "11.0.1"; + buildNumber = "13"; + packageType = "jre"; + vmType = "openj9"; + sha256 = "0901dc5946fdf967f92f7b719ddfffdcdde5bd3fef86a83d7a3f2f39ddbef1f8"; + }; } diff --git a/pkgs/development/compilers/adoptopenjdk-bin/jdk11-linux.nix b/pkgs/development/compilers/adoptopenjdk-bin/jdk11-linux.nix index 6e00782c3918def5e9158e256eada93e60714762..f4990b6effc50e085b37b95bf2596993f71ce32f 100644 --- a/pkgs/development/compilers/adoptopenjdk-bin/jdk11-linux.nix +++ b/pkgs/development/compilers/adoptopenjdk-bin/jdk11-linux.nix @@ -1,36 +1,43 @@ let - version = "11"; - buildNumber = "28"; - baseUrl = "https://github.com/AdoptOpenJDK/openjdk11-binaries/releases/download/jdk-${version}%2B${buildNumber}"; - makePackage = { packageType, vmType, sha256 }: import ./jdk-linux-base.nix { + makePackage = { version, buildNumber, packageType, vmType, sha256 }: import ./jdk-linux-base.nix { name = if packageType == "jdk" then "adoptopenjdk-${vmType}-bin-${version}" else "adoptopenjdk-${packageType}-${vmType}-bin-${version}"; - url = "${baseUrl}/OpenJDK${version}-${packageType}_x64_linux_${vmType}_${version}_${buildNumber}.tar.gz"; + + url = "https://github.com/AdoptOpenJDK/openjdk11-binaries/releases/download/jdk-${version}%2B${buildNumber}/OpenJDK11-${packageType}_x64_linux_${vmType}_${version}_${buildNumber}.tar.gz"; + inherit sha256; }; in { jdk-hotspot = makePackage { + version = "11"; + buildNumber = "28"; packageType = "jdk"; vmType = "hotspot"; sha256 = "e1e18fc9ce2917473da3e0acb5a771bc651f600c0195a3cb40ef6f22f21660af"; }; jre-hotspot = makePackage { + version = "11"; + buildNumber = "28"; packageType = "jre"; vmType = "hotspot"; sha256 = "346448142d46c6e51d0fadcaadbcde31251d7678922ec3eb010fcb1b6e17804c"; }; jdk-openj9 = makePackage { + version = "11.0.1"; + buildNumber = "13"; packageType = "jdk"; vmType = "openj9"; - sha256 = "fd77f22eb74078bcf974415abd888296284d2ceb81dbaca6ff32f59416ebc57f"; + sha256 = "765947ab9457a29d2aa9d11460a4849611343c1e0ea3b33b9c08409cd4672251"; }; jre-openj9 = makePackage { + version = "11.0.1"; + buildNumber = "13"; packageType = "jre"; vmType = "openj9"; - sha256 = "83a7c95e6b2150a739bdd5e8a6fe0315904fd13d8867c95db67c0318304a2c42"; + sha256 = "a016413fd8415429b42e543fed7a1bee5010b1dbaf71d29a26e1c699f334c6ff"; }; } diff --git a/pkgs/development/compilers/closure/default.nix b/pkgs/development/compilers/closure/default.nix index 63b31c60d9869f1552704c6af6f02e2f1b5cea13..d26f731c21f9ec85f8a27310caa9e9ff534f4c13 100644 --- a/pkgs/development/compilers/closure/default.nix +++ b/pkgs/development/compilers/closure/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { name = "closure-compiler-${version}"; - version = "20180805"; + version = "20180910"; src = fetchurl { url = "https://dl.google.com/closure-compiler/compiler-${version}.tar.gz"; - sha256 = "1jis9ykbbynq6pa8sl1jy8888l2bk9g4xsiiiab51zn62shqnq26"; + sha256 = "12k4cp9f8g03k3zf2g70pn6ybx8gk0hfh81ypiyb5hkfij95bi9k"; }; sourceRoot = "."; diff --git a/pkgs/development/compilers/cudatoolkit/default.nix b/pkgs/development/compilers/cudatoolkit/default.nix index e44c21abe94602bfbc28c84425e84cf4dced1084..6fdbde242f32c558f475ea5e2c0547b5c77f5ec9 100644 --- a/pkgs/development/compilers/cudatoolkit/default.nix +++ b/pkgs/development/compilers/cudatoolkit/default.nix @@ -1,5 +1,5 @@ { lib, stdenv, makeWrapper, fetchurl, requireFile, perl, ncurses, expat, python27, zlib -, gcc48, gcc49, gcc5, gcc6 +, gcc48, gcc49, gcc5, gcc6, gcc7 , xorg, gtk2, glib, fontconfig, freetype, unixODBC, alsaLib, glibc }: @@ -149,8 +149,7 @@ let }; }; -in { - +in rec { cudatoolkit_6 = common { version = "6.0.37"; url = "http://developer.download.nvidia.com/compute/cuda/6_0/rel/installers/cuda_6.0.37_linux_64.run"; @@ -199,8 +198,8 @@ in { gcc = gcc6; }; - cudatoolkit_9 = common { - version = "9.1.85.1"; + cudatoolkit_9_1 = common { + version = "9.1.85.3"; url = "https://developer.nvidia.com/compute/cuda/9.1/Prod/local_installers/cuda_9.1.85_387.26_linux"; sha256 = "0lz9bwhck1ax4xf1fyb5nicb7l1kssslj518z64iirpy2qmwg5l4"; runPatches = [ @@ -208,9 +207,40 @@ in { url = "https://developer.nvidia.com/compute/cuda/9.1/Prod/patches/1/cuda_9.1.85.1_linux"; sha256 = "1f53ij5nb7g0vb5pcpaqvkaj1x4mfq3l0mhkfnqbk8sfrvby775g"; }) + (fetchurl { + url = "https://developer.nvidia.com/compute/cuda/9.1/Prod/patches/2/cuda_9.1.85.2_linux"; + sha256 = "16g0w09h3bqmas4hy1m0y6j5ffyharslw52fn25gql57bfihg7ym"; + }) + (fetchurl { + url = "https://developer.nvidia.com/compute/cuda/9.1/Prod/patches/3/cuda_9.1.85.3_linux"; + sha256 = "12mcv6f8z33z8y41ja8bv5p5iqhv2vx91mv3b5z6fcj7iqv98422"; + }) ]; gcc = gcc6; }; -} + cudatoolkit_9_2 = common { + version = "9.2.148.1"; + url = "https://developer.nvidia.com/compute/cuda/9.2/Prod2/local_installers/cuda_9.2.148_396.37_linux"; + sha256 = "04c6v9b50l4awsf9w9zj5vnxvmc0hk0ypcfjksbh4vnzrz14wigm"; + runPatches = [ + (fetchurl { + url = "https://developer.nvidia.com/compute/cuda/9.2/Prod2/patches/1/cuda_9.2.148.1_linux"; + sha256 = "1kx6l4yzsamk6q1f4vllcpywhbfr2j5wfl4h5zx8v6dgfpsjm2lw"; + }) + ]; + gcc = gcc7; + }; + + cudatoolkit_9 = cudatoolkit_9_2; + cudatoolkit_10_0 = common { + version = "10.0.130"; + url = "https://developer.nvidia.com/compute/cuda/10.0/Prod/local_installers/cuda_10.0.130_410.48_linux"; + sha256 = "16p3bv1lwmyqpxil8r951h385sy9asc578afrc7lssa68c71ydcj"; + + gcc = gcc7; + }; + + cudatoolkit_10 = cudatoolkit_10_0; +} diff --git a/pkgs/development/compilers/gcc-arm-embedded/6/default.nix b/pkgs/development/compilers/gcc-arm-embedded/6/default.nix deleted file mode 100644 index 945649b29781ea0351e1171a7c7a0c9ca412d5cf..0000000000000000000000000000000000000000 --- a/pkgs/development/compilers/gcc-arm-embedded/6/default.nix +++ /dev/null @@ -1,45 +0,0 @@ -{ stdenv, fetchurl, ncurses5, python27 }: - -stdenv.mkDerivation rec { - name = "gcc-arm-embedded-${version}"; - version = "6-2017-q2-update"; - subdir = "6-2017q2"; - - platformString = - if stdenv.isLinux then "linux" - else if stdenv.isDarwin then "mac" - else throw "unsupported platform"; - - urlString = "https://developer.arm.com/-/media/Files/downloads/gnu-rm/${subdir}/gcc-arm-none-eabi-${version}-${platformString}.tar.bz2"; - - src = - if stdenv.isLinux then fetchurl { url=urlString; sha256="1hvwi02mx34al525sngnl0cm7dkmzxfkb1brq9kvbv28wcplp3p6"; } - else if stdenv.isDarwin then fetchurl { url=urlString; sha256="0019ylpq4inq7p5gydpmc9m8ni72fz2csrjlqmgx1698998q0c3x"; } - else throw "unsupported platform"; - - phases = [ "unpackPhase" "installPhase" "fixupPhase" ]; - - installPhase = '' - mkdir -p $out - cp -r * $out - ''; - - dontPatchELF = true; - dontStrip = true; - - preFixup = '' - find $out -type f | while read f; do - patchelf $f > /dev/null 2>&1 || continue - patchelf --set-interpreter $(cat ${stdenv.cc}/nix-support/dynamic-linker) "$f" || true - patchelf --set-rpath ${stdenv.lib.makeLibraryPath [ "$out" stdenv.cc.cc ncurses5 python27 ]} "$f" || true - done - ''; - - meta = { - description = "Pre-built GNU toolchain from ARM Cortex-M & Cortex-R processors (Cortex-M0/M0+/M3/M4/M7, Cortex-R4/R5/R7/R8)"; - homepage = https://developer.arm.com/open-source/gnu-toolchain/gnu-rm; - license = with stdenv.lib.licenses; [ bsd2 gpl2 gpl3 lgpl21 lgpl3 mit ]; - maintainers = with stdenv.lib.maintainers; [ vinymeuh ]; - platforms = with stdenv.lib.platforms; linux ++ darwin; - }; -} diff --git a/pkgs/development/compilers/gcc-arm-embedded/7/default.nix b/pkgs/development/compilers/gcc-arm-embedded/7/default.nix deleted file mode 100644 index c22683dae03aa78f146834c733eadfc2a94202e1..0000000000000000000000000000000000000000 --- a/pkgs/development/compilers/gcc-arm-embedded/7/default.nix +++ /dev/null @@ -1,39 +0,0 @@ -{ stdenv, lib, fetchurl, ncurses5, python27 }: - -with lib; - -stdenv.mkDerivation rec { - name = "gcc-arm-embedded-${version}"; - version = "7-2018-q2-update"; - subdir = "7-2018q2"; - - urlString = "https://developer.arm.com/-/media/Files/downloads/gnu-rm/${subdir}/gcc-arm-none-eabi-${version}-linux.tar.bz2"; - - src = fetchurl { url=urlString; sha256="0sgysp3hfpgrkcbfiwkp0a7ymqs02khfbrjabm52b5z61sgi05xv"; }; - - phases = [ "unpackPhase" "installPhase" "fixupPhase" ]; - - installPhase = '' - mkdir -p $out - cp -r * $out - ''; - - dontPatchELF = true; - dontStrip = true; - - preFixup = '' - find $out -type f | while read f; do - patchelf $f > /dev/null 2>&1 || continue - patchelf --set-interpreter $(cat ${stdenv.cc}/nix-support/dynamic-linker) "$f" || true - patchelf --set-rpath ${stdenv.lib.makeLibraryPath [ "$out" stdenv.cc.cc ncurses5 python27 ]} "$f" || true - done - ''; - - meta = { - description = "Pre-built GNU toolchain from ARM Cortex-M & Cortex-R processors (Cortex-M0/M0+/M3/M4/M7, Cortex-R4/R5/R7/R8)"; - homepage = https://developer.arm.com/open-source/gnu-toolchain/gnu-rm; - license = with licenses; [ bsd2 gpl2 gpl3 lgpl21 lgpl3 mit ]; - maintainers = with maintainers; [ prusnak ]; - platforms = platforms.linux; - }; -} diff --git a/pkgs/development/compilers/gcc-arm-embedded/default.nix b/pkgs/development/compilers/gcc-arm-embedded/default.nix deleted file mode 100644 index 039b5a9ce362d15c1a03b43d03222a0e6bfc1e02..0000000000000000000000000000000000000000 --- a/pkgs/development/compilers/gcc-arm-embedded/default.nix +++ /dev/null @@ -1,50 +0,0 @@ -{ stdenv, bzip2, patchelf, glibc, gcc, fetchurl, version, releaseType, sha256, ncurses -, dirName ? null, subdirName ? null }: -with stdenv.lib; -let - versionParts = splitString "-" version; # 4.7 2013q3 20130916 - majorVersion = elemAt versionParts 0; # 4.7 - yearQuarter = elemAt versionParts 1; # 2013q3 - underscoreVersion = replaceChars ["."] ["_"] version; # 4_7-2013q3-20130916 - yearQuarterParts = splitString "q" yearQuarter; # 2013 3 - year = elemAt yearQuarterParts 0; # 2013 - quarter = elemAt yearQuarterParts 1; # 3 - dirName_ = if dirName != null then dirName else majorVersion; - subdirName_ = if subdirName != null then subdirName - else "${majorVersion}-${year}-q${quarter}-${releaseType}"; # 4.7-2013-q3-update -in -stdenv.mkDerivation { - name = "gcc-arm-embedded-${version}"; - - src = fetchurl { - url = "https://launchpad.net/gcc-arm-embedded/${dirName_}/${subdirName_}/+download/gcc-arm-none-eabi-${underscoreVersion}-linux.tar.bz2"; - sha256 = sha256; - }; - - nativeBuildInputs = [ bzip2 patchelf ]; - - dontPatchELF = true; - - phases = "unpackPhase patchPhase installPhase"; - - installPhase = '' - mkdir -pv $out - cp -r ./* $out - - for f in $(find $out); do - if [ -f "$f" ] && patchelf "$f" 2> /dev/null; then - patchelf --set-interpreter ${getLib glibc}/lib/ld-linux.so.2 \ - --set-rpath ${stdenv.lib.makeLibraryPath [ "$out" gcc ncurses ]} \ - "$f" || true - fi - done - ''; - - meta = with stdenv.lib; { - description = "Pre-built GNU toolchain from ARM Cortex-M & Cortex-R processors (Cortex-M0/M0+/M3/M4, Cortex-R4/R5/R7)"; - homepage = https://launchpad.net/gcc-arm-embedded; - license = with licenses; [ bsd2 gpl2 gpl3 lgpl21 lgpl3 mit ]; - maintainers = [ maintainers.rasendubi ]; - platforms = platforms.linux; - }; -} diff --git a/pkgs/development/compilers/gcc/4.8/default.nix b/pkgs/development/compilers/gcc/4.8/default.nix index d9376f597a703a878148e0f9c5006e83c114282e..e40994a078e3dc79e9001e717f524d28fa35acbf 100644 --- a/pkgs/development/compilers/gcc/4.8/default.nix +++ b/pkgs/development/compilers/gcc/4.8/default.nix @@ -130,7 +130,7 @@ let version = "4.8.5"; "--disable-libmpx" # requires libc ] else [ (if crossDarwin then "--with-sysroot=${getLib libcCross}/share/sysroot" - else "--with-headers=${getDev libcCross}/include") + else "--with-headers=${getDev libcCross}${libcCross.incdir or "/include"}") "--enable-__cxa_atexit" "--enable-long-long" ] ++ @@ -148,10 +148,15 @@ let version = "4.8.5"; # In uclibc cases, libgomp needs an additional '-ldl' # and as I don't know how to pass it, I disable libgomp. "--disable-libgomp" - ] ++ [ - "--enable-threads=posix" - "--enable-nls" - "--disable-decimal-float" # No final libdecnumber (it may work only in 386) + ] + ++ optional (targetPlatform.libc == "newlib") "--with-newlib" + ++ optional (targetPlatform.libc == "avrlibc") "--with-avrlibc" + ++ [ + "--enable-threads=${if targetPlatform.isUnix then "posix" + else if targetPlatform.isWindows then "win32" + else "single"}" + "--enable-nls" + "--disable-decimal-float" # No final libdecnumber (it may work only in 386) ])); stageNameAddon = if crossStageStatic then "-stage-static" else "-stage-final"; crossNameAddon = if targetPlatform != hostPlatform then "${targetPlatform.config}${stageNameAddon}-" else ""; @@ -175,7 +180,7 @@ stdenv.mkDerivation ({ inherit patches; - hardeningDisable = [ "format" ]; + hardeningDisable = [ "format" ] ++ stdenv.lib.optional stdenv.targetPlatform.isMusl "pie"; outputs = [ "out" "lib" "man" "info" ]; setOutputFlags = false; @@ -270,7 +275,7 @@ stdenv.mkDerivation ({ }" ] ++ - (if enableMultilib + (if (enableMultilib || targetPlatform.isAvr) then ["--enable-multilib" "--disable-libquadmath"] else ["--disable-multilib"]) ++ optional (!enableShared) "--disable-shared" ++ @@ -360,20 +365,20 @@ stdenv.mkDerivation ({ EXTRA_TARGET_FLAGS = optionals (targetPlatform != hostPlatform && libcCross != null) ([ - "-idirafter ${libcCross.dev}/include" + "-idirafter ${getDev libcCross}${libcCross.incdir or "/include"}" ] ++ optionals (! crossStageStatic) [ - "-B${libcCross.out}/lib" + "-B${libcCross.out}${libcCross.libdir or "/lib"}" ]); EXTRA_TARGET_LDFLAGS = optionals (targetPlatform != hostPlatform && libcCross != null) ([ - "-Wl,-L${libcCross.out}/lib" + "-Wl,-L${libcCross.out}${libcCross.libdir or "/lib"}" ] ++ (if crossStageStatic then [ - "-B${libcCross.out}/lib" + "-B${libcCross.out}${libcCross.libdir or "/lib"}" ] else [ - "-Wl,-rpath,${libcCross.out}/lib" - "-Wl,-rpath-link,${libcCross.out}/lib" + "-Wl,-rpath,${libcCross.out}${libcCross.libdir or "/lib"}" + "-Wl,-rpath-link,${libcCross.out}${libcCross.libdir or "/lib"}" ])); passthru = { diff --git a/pkgs/development/compilers/gcc/4.9/default.nix b/pkgs/development/compilers/gcc/4.9/default.nix index c60f54f1560c4e504c2f2b7a58b1ce01ecaae899..bd5257b94a09b8d8b539bf4d567563d29b091da5 100644 --- a/pkgs/development/compilers/gcc/4.9/default.nix +++ b/pkgs/development/compilers/gcc/4.9/default.nix @@ -135,7 +135,7 @@ let version = "4.9.4"; "--disable-libmpx" # requires libc ] else [ (if crossDarwin then "--with-sysroot=${getLib libcCross}/share/sysroot" - else "--with-headers=${getDev libcCross}/include") + else "--with-headers=${getDev libcCross}${libcCross.incdir or "/include"}") "--enable-__cxa_atexit" "--enable-long-long" ] ++ @@ -156,10 +156,15 @@ let version = "4.9.4"; # In uclibc cases, libgomp needs an additional '-ldl' # and as I don't know how to pass it, I disable libgomp. "--disable-libgomp" - ] ++ [ - "--enable-threads=posix" - "--enable-nls" - "--disable-decimal-float" # No final libdecnumber (it may work only in 386) + ] + ++ optional (targetPlatform.libc == "newlib") "--with-newlib" + ++ optional (targetPlatform.libc == "avrlibc") "--with-avrlibc" + ++ [ + "--enable-threads=${if targetPlatform.isUnix then "posix" + else if targetPlatform.isWindows then "win32" + else "single"}" + "--enable-nls" + "--disable-decimal-float" # No final libdecnumber (it may work only in 386) ])); stageNameAddon = if crossStageStatic then "-stage-static" else "-stage-final"; crossNameAddon = if targetPlatform != hostPlatform then "${targetPlatform.config}${stageNameAddon}-" else ""; @@ -183,7 +188,7 @@ stdenv.mkDerivation ({ inherit patches; - hardeningDisable = [ "format" ]; + hardeningDisable = [ "format" ] ++ stdenv.lib.optional stdenv.targetPlatform.isMusl "pie"; outputs = if langJava || langGo then ["out" "man" "info"] else [ "out" "lib" "man" "info" ]; @@ -292,7 +297,7 @@ stdenv.mkDerivation ({ }" ] ++ - (if enableMultilib + (if (enableMultilib || targetPlatform.isAvr) then ["--enable-multilib" "--disable-libquadmath"] else ["--disable-multilib"]) ++ optional (!enableShared) "--disable-shared" ++ @@ -381,20 +386,20 @@ stdenv.mkDerivation ({ EXTRA_TARGET_FLAGS = optionals (targetPlatform != hostPlatform && libcCross != null) ([ - "-idirafter ${getDev libcCross}/include" + "-idirafter ${getDev libcCross}${libcCross.incdir or "/include"}" ] ++ optionals (! crossStageStatic) [ - "-B${libcCross.out}/lib" + "-B${libcCross.out}${libcCross.libdir or "/lib"}" ]); EXTRA_TARGET_LDFLAGS = optionals (targetPlatform != hostPlatform && libcCross != null) ([ - "-Wl,-L${libcCross.out}/lib" + "-Wl,-L${libcCross.out}${libcCross.libdir or "/lib"}" ] ++ (if crossStageStatic then [ - "-B${libcCross.out}/lib" + "-B${libcCross.out}${libcCross.libdir or "/lib"}" ] else [ - "-Wl,-rpath,${libcCross.out}/lib" - "-Wl,-rpath-link,${libcCross.out}/lib" + "-Wl,-rpath,${libcCross.out}${libcCross.libdir or "/lib"}" + "-Wl,-rpath-link,${libcCross.out}${libcCross.libdir or "/lib"}" ])); passthru = diff --git a/pkgs/development/compilers/gcc/5/default.nix b/pkgs/development/compilers/gcc/5/default.nix index 47c849d2dcc881f0c3e1c7995bc15bffe6ea01f3..85b3d96e13684cc1c8f7b5ed5d9da2cffe0008ea 100644 --- a/pkgs/development/compilers/gcc/5/default.nix +++ b/pkgs/development/compilers/gcc/5/default.nix @@ -122,7 +122,7 @@ let version = "5.5.0"; "--disable-libmpx" # requires libc ] else [ (if crossDarwin then "--with-sysroot=${getLib libcCross}/share/sysroot" - else "--with-headers=${getDev libcCross}/include") + else "--with-headers=${getDev libcCross}${libcCross.incdir or "/include"}") "--enable-__cxa_atexit" "--enable-long-long" ] ++ @@ -143,10 +143,15 @@ let version = "5.5.0"; # In uclibc cases, libgomp needs an additional '-ldl' # and as I don't know how to pass it, I disable libgomp. "--disable-libgomp" - ] ++ [ - "--enable-threads=posix" - "--enable-nls" - "--disable-decimal-float" # No final libdecnumber (it may work only in 386) + ] + ++ optional (targetPlatform.libc == "newlib") "--with-newlib" + ++ optional (targetPlatform.libc == "avrlibc") "--with-avrlibc" + ++ [ + "--enable-threads=${if targetPlatform.isUnix then "posix" + else if targetPlatform.isWindows then "win32" + else "single"}" + "--enable-nls" + "--disable-decimal-float" # No final libdecnumber (it may work only in 386) ])); stageNameAddon = if crossStageStatic then "-stage-static" else "-stage-final"; crossNameAddon = if targetPlatform != hostPlatform then "${targetPlatform.config}${stageNameAddon}-" else ""; @@ -176,7 +181,7 @@ stdenv.mkDerivation ({ libc_dev = stdenv.cc.libc_dev; - hardeningDisable = [ "format" ]; + hardeningDisable = [ "format" ] ++ stdenv.lib.optional stdenv.targetPlatform.isMusl "pie"; # This should kill all the stdinc frameworks that gcc and friends like to # insert into default search paths. @@ -296,7 +301,7 @@ stdenv.mkDerivation ({ }" ] ++ - (if enableMultilib + (if (enableMultilib || targetPlatform.isAvr) then ["--enable-multilib" "--disable-libquadmath"] else ["--disable-multilib"]) ++ optional (!enableShared) "--disable-shared" ++ @@ -387,20 +392,20 @@ stdenv.mkDerivation ({ EXTRA_TARGET_FLAGS = optionals (targetPlatform != hostPlatform && libcCross != null) ([ - "-idirafter ${getDev libcCross}/include" + "-idirafter ${getDev libcCross}${libcCross.incdir or "/include"}" ] ++ optionals (! crossStageStatic) [ - "-B${libcCross.out}/lib" + "-B${libcCross.out}${libcCross.libdir or "/lib"}" ]); EXTRA_TARGET_LDFLAGS = optionals (targetPlatform != hostPlatform && libcCross != null) ([ - "-Wl,-L${libcCross.out}/lib" + "-Wl,-L${libcCross.out}${libcCross.libdir or "/lib"}" ] ++ (if crossStageStatic then [ - "-B${libcCross.out}/lib" + "-B${libcCross.out}${libcCross.libdir or "/lib"}" ] else [ - "-Wl,-rpath,${libcCross.out}/lib" - "-Wl,-rpath-link,${libcCross.out}/lib" + "-Wl,-rpath,${libcCross.out}${libcCross.libdir or "/lib"}" + "-Wl,-rpath-link,${libcCross.out}${libcCross.libdir or "/lib"}" ])); passthru = diff --git a/pkgs/development/compilers/gcc/6/default.nix b/pkgs/development/compilers/gcc/6/default.nix index eeb57be97157aa934f271f845893d2ff471a5122..98e24900b01f6ed91533709cf5eac6a7139b7182 100644 --- a/pkgs/development/compilers/gcc/6/default.nix +++ b/pkgs/development/compilers/gcc/6/default.nix @@ -120,7 +120,7 @@ let version = "6.4.0"; "--disable-libmpx" # requires libc ] else [ (if crossDarwin then "--with-sysroot=${getLib libcCross}/share/sysroot" - else "--with-headers=${getDev libcCross}/include") + else "--with-headers=${getDev libcCross}${libcCross.incdir or "/include"}") "--enable-__cxa_atexit" "--enable-long-long" ] ++ @@ -143,10 +143,15 @@ let version = "6.4.0"; "--disable-libgomp" # musl at least, disable: https://git.buildroot.net/buildroot/commit/?id=873d4019f7fb00f6a80592224236b3ba7d657865 "--disable-libmpx" - ] ++ [ - "--enable-threads=posix" - "--enable-nls" - "--disable-decimal-float" # No final libdecnumber (it may work only in 386) + ] + ++ optional (targetPlatform.libc == "newlib") "--with-newlib" + ++ optional (targetPlatform.libc == "avrlibc") "--with-avrlibc" + ++ [ + "--enable-threads=${if targetPlatform.isUnix then "posix" + else if targetPlatform.isWindows then "win32" + else "single"}" + "--enable-nls" + "--disable-decimal-float" # No final libdecnumber (it may work only in 386) ])); stageNameAddon = if crossStageStatic then "-stage-static" else "-stage-final"; crossNameAddon = if targetPlatform != hostPlatform then "${targetPlatform.config}${stageNameAddon}-" else ""; @@ -177,7 +182,7 @@ stdenv.mkDerivation ({ libc_dev = stdenv.cc.libc_dev; - hardeningDisable = [ "format" ]; + hardeningDisable = [ "format" ] ++ stdenv.lib.optional stdenv.targetPlatform.isMusl "pie"; # This should kill all the stdinc frameworks that gcc and friends like to # insert into default search paths. @@ -301,7 +306,7 @@ stdenv.mkDerivation ({ }" ] ++ - (if enableMultilib + (if (enableMultilib || targetPlatform.isAvr) then ["--enable-multilib" "--disable-libquadmath"] else ["--disable-multilib"]) ++ optional (!enableShared) "--disable-shared" ++ @@ -391,20 +396,20 @@ stdenv.mkDerivation ({ EXTRA_TARGET_FLAGS = optionals (targetPlatform != hostPlatform && libcCross != null) ([ - "-idirafter ${getDev libcCross}/include" + "-idirafter ${getDev libcCross}${libcCross.incdir or "/include"}" ] ++ optionals (! crossStageStatic) [ - "-B${libcCross.out}/lib" + "-B${libcCross.out}${libcCross.libdir or "/lib"}" ]); EXTRA_TARGET_LDFLAGS = optionals (targetPlatform != hostPlatform && libcCross != null) ([ - "-Wl,-L${libcCross.out}/lib" + "-Wl,-L${libcCross.out}${libcCross.libdir or "/lib"}" ] ++ (if crossStageStatic then [ - "-B${libcCross.out}/lib" + "-B${libcCross.out}${libcCross.libdir or "/lib"}" ] else [ - "-Wl,-rpath,${libcCross.out}/lib" - "-Wl,-rpath-link,${libcCross.out}/lib" + "-Wl,-rpath,${libcCross.out}${libcCross.libdir or "/lib"}" + "-Wl,-rpath-link,${libcCross.out}${libcCross.libdir or "/lib"}" ])); passthru = diff --git a/pkgs/development/compilers/gcc/7/default.nix b/pkgs/development/compilers/gcc/7/default.nix index 59897ccff426e1630971eb02efac5c7d7a0199e4..064d9eb6bc7bdff95cc3e61913a9fb55a5c0e446 100644 --- a/pkgs/development/compilers/gcc/7/default.nix +++ b/pkgs/development/compilers/gcc/7/default.nix @@ -67,7 +67,7 @@ let version = "7.3.0"; [ "--with-as=${targetPackages.stdenv.cc.bintools}/bin/${targetPlatform.config}-as" "--with-ld=${targetPackages.stdenv.cc.bintools}/bin/${targetPlatform.config}-ld" ] ++ (if crossMingw && crossStageStatic then [ - "--with-headers=${libcCross}/include" + "--with-headers=${getDev libcCross}${libcCross.incdir or "/include"}" "--with-gcc" "--with-gnu-as" "--with-gnu-ld" @@ -92,7 +92,7 @@ let version = "7.3.0"; "--disable-libmpx" # requires libc ] else [ (if crossDarwin then "--with-sysroot=${getLib libcCross}/share/sysroot" - else "--with-headers=${getDev libcCross}/include") + else "--with-headers=${getDev libcCross}${libcCross.incdir or "/include"}") "--enable-__cxa_atexit" "--enable-long-long" ] ++ @@ -115,11 +115,17 @@ let version = "7.3.0"; "--disable-libgomp" # musl at least, disable: https://git.buildroot.net/buildroot/commit/?id=873d4019f7fb00f6a80592224236b3ba7d657865 "--disable-libmpx" - ] ++ [ - "--enable-threads=posix" - "--enable-nls" - "--disable-decimal-float" # No final libdecnumber (it may work only in 386) - ])); + ] + ++ optional (targetPlatform.libc == "newlib") "--with-newlib" + ++ optional (targetPlatform.libc == "avrlibc") "--with-avrlibc" + ++ [ + "--enable-threads=${if targetPlatform.isUnix then "posix" + else if targetPlatform.isWindows then "win32" + else "single"}" + "--enable-nls" + # No final libdecnumber (it may work only in 386) + "--disable-decimal-float" + ])); stageNameAddon = if crossStageStatic then "-stage-static" else "-stage-final"; crossNameAddon = if targetPlatform != hostPlatform then "${targetPlatform.config}${stageNameAddon}-" else ""; @@ -145,7 +151,7 @@ stdenv.mkDerivation ({ libc_dev = stdenv.cc.libc_dev; - hardeningDisable = [ "format" ]; + hardeningDisable = [ "format" ] ++ stdenv.lib.optional stdenv.targetPlatform.isMusl "pie"; # This should kill all the stdinc frameworks that gcc and friends like to # insert into default search paths. @@ -188,7 +194,12 @@ stdenv.mkDerivation ({ sed -i gcc/config/linux.h -e '1i#undef LOCAL_INCLUDE_DIR' '' ) - else ""); + else "") + + stdenv.lib.optionalString targetPlatform.isAvr '' + makeFlagsArray+=( + 'LIMITS_H_TEST=false' + ) + ''; inherit noSysDirs staticCompiler crossStageStatic libcCross crossMingw; @@ -267,7 +278,7 @@ stdenv.mkDerivation ({ }" ] ++ - (if enableMultilib + (if (enableMultilib || targetPlatform.isAvr) then ["--enable-multilib" "--disable-libquadmath"] else ["--disable-multilib"]) ++ optional (!enableShared) "--disable-shared" ++ @@ -334,20 +345,20 @@ stdenv.mkDerivation ({ EXTRA_TARGET_FLAGS = optionals (targetPlatform != hostPlatform && libcCross != null) ([ - "-idirafter ${getDev libcCross}/include" + "-idirafter ${getDev libcCross}${libcCross.incdir or "/include"}" ] ++ optionals (! crossStageStatic) [ - "-B${libcCross.out}/lib" + "-B${libcCross.out}${libcCross.libdir or "/lib"}" ]); EXTRA_TARGET_LDFLAGS = optionals (targetPlatform != hostPlatform && libcCross != null) ([ - "-Wl,-L${libcCross.out}/lib" + "-Wl,-L${libcCross.out}${libcCross.libdir or "/lib"}" ] ++ (if crossStageStatic then [ - "-B${libcCross.out}/lib" + "-B${libcCross.out}${libcCross.libdir or "/lib"}" ] else [ - "-Wl,-rpath,${libcCross.out}/lib" - "-Wl,-rpath-link,${libcCross.out}/lib" + "-Wl,-rpath,${libcCross.out}${libcCross.libdir or "/lib"}" + "-Wl,-rpath-link,${libcCross.out}${libcCross.libdir or "/lib"}" ])); passthru = diff --git a/pkgs/development/compilers/gcc/8/default.nix b/pkgs/development/compilers/gcc/8/default.nix index 7842110a21469988193dfcff1d8e3ca5c64a0c70..c6fea70cfbb74b2898c3df3bb168174df967c5bc 100644 --- a/pkgs/development/compilers/gcc/8/default.nix +++ b/pkgs/development/compilers/gcc/8/default.nix @@ -87,7 +87,7 @@ let version = "8.2.0"; "--disable-libmpx" # requires libc ] else [ (if crossDarwin then "--with-sysroot=${getLib libcCross}/share/sysroot" - else "--with-headers=${getDev libcCross}/include") + else "--with-headers=${getDev libcCross}${libcCross.incdir or "/include"}") "--enable-__cxa_atexit" "--enable-long-long" ] ++ @@ -110,10 +110,15 @@ let version = "8.2.0"; "--disable-libgomp" # musl at least, disable: https://git.buildroot.net/buildroot/commit/?id=873d4019f7fb00f6a80592224236b3ba7d657865 "--disable-libmpx" - ] ++ [ - "--enable-threads=posix" - "--enable-nls" - "--disable-decimal-float" # No final libdecnumber (it may work only in 386) + ] + ++ optional (targetPlatform.libc == "newlib") "--with-newlib" + ++ optional (targetPlatform.libc == "avrlibc") "--with-avrlibc" + ++ [ + "--enable-threads=${if targetPlatform.isUnix then "posix" + else if targetPlatform.isWindows then "win32" + else "single"}" + "--enable-nls" + "--disable-decimal-float" # No final libdecnumber (it may work only in 386) ])); stageNameAddon = if crossStageStatic then "-stage-static" else "-stage-final"; crossNameAddon = if targetPlatform != hostPlatform then "-${targetPlatform.config}" + stageNameAddon else ""; @@ -140,7 +145,7 @@ stdenv.mkDerivation ({ libc_dev = stdenv.cc.libc_dev; - hardeningDisable = [ "format" ]; + hardeningDisable = [ "format" ] ++ stdenv.lib.optional stdenv.targetPlatform.isMusl "pie"; # This should kill all the stdinc frameworks that gcc and friends like to # insert into default search paths. @@ -261,7 +266,7 @@ stdenv.mkDerivation ({ }" ] ++ - (if enableMultilib + (if (enableMultilib || targetPlatform.isAvr) then ["--enable-multilib" "--disable-libquadmath"] else ["--disable-multilib"]) ++ optional (!enableShared) "--disable-shared" ++ @@ -322,23 +327,16 @@ stdenv.mkDerivation ({ LIBRARY_PATH = optionals (targetPlatform == hostPlatform) (makeLibraryPath (optional (zlib != null) zlib)); - EXTRA_TARGET_FLAGS = optionals - (targetPlatform != hostPlatform && libcCross != null) - ([ - "-idirafter ${getDev libcCross}/include" - ] ++ optionals (! crossStageStatic) [ - "-B${libcCross.out}/lib" - ]); EXTRA_TARGET_LDFLAGS = optionals (targetPlatform != hostPlatform && libcCross != null) ([ - "-Wl,-L${libcCross.out}/lib" + "-Wl,-L${libcCross.out}${libcCross.libdir or "/lib"}" ] ++ (if crossStageStatic then [ - "-B${libcCross.out}/lib" + "-B${libcCross.out}${libcCross.libdir or "/lib"}" ] else [ - "-Wl,-rpath,${libcCross.out}/lib" - "-Wl,-rpath-link,${libcCross.out}/lib" + "-Wl,-rpath,${libcCross.out}${libcCross.libdir or "/lib"}" + "-Wl,-rpath-link,${libcCross.out}${libcCross.libdir or "/lib"}" ])); passthru = diff --git a/pkgs/development/compilers/gcc/snapshot/default.nix b/pkgs/development/compilers/gcc/snapshot/default.nix index 0de6be36c3511ae98989371019af197562e982ba..a308abd9c16f4dc2d62e81636ee7f1acc6e1e0eb 100644 --- a/pkgs/development/compilers/gcc/snapshot/default.nix +++ b/pkgs/development/compilers/gcc/snapshot/default.nix @@ -104,10 +104,15 @@ let version = "7-20170409"; # In uclibc cases, libgomp needs an additional '-ldl' # and as I don't know how to pass it, I disable libgomp. "--disable-libgomp" - ] ++ [ - "--enable-threads=posix" - "--enable-nls" - "--disable-decimal-float" # No final libdecnumber (it may work only in 386) + ] + ++ optional (targetPlatform.libc == "newlib") "--with-newlib" + ++ optional (targetPlatform.libc == "avrlibc") "--with-avrlibc" + ++ [ + "--enable-threads=${if targetPlatform.isUnix then "posix" + else if targetPlatform.isWindows then "win32" + else "single"}" + "--enable-nls" + "--disable-decimal-float" # No final libdecnumber (it may work only in 386) ])); stageNameAddon = if crossStageStatic then "-stage-static" else "-stage-final"; crossNameAddon = if targetPlatform != hostPlatform then "-${targetPlatform.config}" + stageNameAddon else ""; @@ -290,20 +295,20 @@ stdenv.mkDerivation ({ EXTRA_TARGET_FLAGS = optionals (targetPlatform != hostPlatform && libcCross != null) ([ - "-idirafter ${getDev libcCross}/include" + "-idirafter ${getDev libcCross}${libcCross.incdir or "/include"}" ] ++ optionals (! crossStageStatic) [ - "-B${libcCross.out}/lib" + "-B${libcCross.out}${libcCross.libdir or "/lib"}" ]); EXTRA_TARGET_LDFLAGS = optionals (targetPlatform != hostPlatform && libcCross != null) ([ - "-Wl,-L${libcCross.out}/lib" + "-Wl,-L${libcCross.out}${libcCross.libdir or "/lib"}" ] ++ (if crossStageStatic then [ - "-B${libcCross.out}/lib" + "-B${libcCross.out}${libcCross.libdir or "/lib"}" ] else [ - "-Wl,-rpath,${libcCross.out}/lib" - "-Wl,-rpath-link,${libcCross.out}/lib" + "-Wl,-rpath,${libcCross.out}${libcCross.libdir or "/lib"}" + "-Wl,-rpath-link,${libcCross.out}${libcCross.libdir or "/lib"}" ])); passthru = diff --git a/pkgs/development/compilers/ghc/7.10.3-binary.nix b/pkgs/development/compilers/ghc/7.10.3-binary.nix deleted file mode 100644 index 53693ff505213d3bba1f847d4023d0d91ad1a1fa..0000000000000000000000000000000000000000 --- a/pkgs/development/compilers/ghc/7.10.3-binary.nix +++ /dev/null @@ -1,163 +0,0 @@ -{ stdenv -, fetchurl, perl -, ncurses5, gmp, libiconv -, gcc, llvm_35 -}: - -# Prebuilt only does native -assert stdenv.targetPlatform == stdenv.hostPlatform; - -let - libPath = stdenv.lib.makeLibraryPath ([ - ncurses5 gmp - ] ++ stdenv.lib.optional (stdenv.hostPlatform.isDarwin) libiconv); - - libEnvVar = stdenv.lib.optionalString stdenv.hostPlatform.isDarwin "DY" - + "LD_LIBRARY_PATH"; - -in - -stdenv.mkDerivation rec { - version = "7.10.3"; - - name = "ghc-${version}-binary"; - - src = fetchurl ({ - "i686-linux" = { - url = "http://haskell.org/ghc/dist/${version}/ghc-${version}b-i386-deb7-linux.tar.bz2"; - sha256 = "20b32912fb7e57910a3c908f99a9519b57a4872e1ea0f4f2265b2f7b30e8a3cd"; - }; - "x86_64-linux" = { - url = "http://haskell.org/ghc/dist/${version}/ghc-${version}b-x86_64-deb8-linux.tar.bz2"; - sha256 = "5e163c557e9236cce68be41c984eab0fcdbdc1602e39040ca9ae325e6bdec1c3"; - }; - "armv7l-linux" = { - url = "http://haskell.org/ghc/dist/${version}/ghc-${version}-armv7-deb8-linux.tar.bz2"; - sha256 = "2913763eef88e4d1843a1e4c34225afb1866310d1a1956c08a4131f4593518f6"; - }; - "x86_64-darwin" = { - url = "http://haskell.org/ghc/dist/${version}/ghc-${version}b-x86_64-apple-darwin.tar.bz2"; - sha256 = "4b537228d49b5ea0f8e8dbcc440a5b3c3cb19a92579d607291cc0041422fa5c3"; - }; - }.${stdenv.hostPlatform.system} - or (throw "cannot bootstrap GHC on this platform")); - - nativeBuildInputs = [ perl ]; - buildInputs = stdenv.lib.optionals stdenv.targetPlatform.isAarch32 [ llvm_35 ]; - - # Cannot patchelf beforehand due to relative RPATHs that anticipate - # the final install location/ - ${libEnvVar} = libPath; - - postUnpack = - # GHC has dtrace probes, which causes ld to try to open /usr/lib/libdtrace.dylib - # during linking - stdenv.lib.optionalString stdenv.isDarwin '' - export NIX_LDFLAGS+=" -no_dtrace_dof" - # not enough room in the object files for the full path to libiconv :( - for exe in $(find . -type f -executable); do - isScript $exe && continue - ln -fs ${libiconv}/lib/libiconv.dylib $(dirname $exe)/libiconv.dylib - install_name_tool -change /usr/lib/libiconv.2.dylib @executable_path/libiconv.dylib -change /usr/local/lib/gcc/5/libgcc_s.1.dylib ${gcc.cc.lib}/lib/libgcc_s.1.dylib $exe - done - '' + - - # Some scripts used during the build need to have their shebangs patched - '' - patchShebangs ghc-${version}/utils/ - patchShebangs ghc-${version}/configure - '' + - - # Strip is harmful, see also below. It's important that this happens - # first. The GHC Cabal build system makes use of strip by default and - # has hardcoded paths to /usr/bin/strip in many places. We replace - # those below, making them point to our dummy script. - '' - mkdir "$TMP/bin" - for i in strip; do - echo '#! ${stdenv.shell}' > "$TMP/bin/$i" - chmod +x "$TMP/bin/$i" - done - PATH="$TMP/bin:$PATH" - '' + - # We have to patch the GMP paths for the integer-gmp package. - '' - find . -name integer-gmp.buildinfo \ - -exec sed -i "s@extra-lib-dirs: @extra-lib-dirs: ${gmp.out}/lib@" {} \; - '' + stdenv.lib.optionalString stdenv.isDarwin '' - find . -name base.buildinfo \ - -exec sed -i "s@extra-lib-dirs: @extra-lib-dirs: ${libiconv}/lib@" {} \; - '' + - # Rename needed libraries and binaries, fix interpreter - stdenv.lib.optionalString stdenv.isLinux '' - find . -type f -perm -0100 -exec patchelf \ - --replace-needed libncurses${stdenv.lib.optionalString stdenv.is64bit "w"}.so.5 libncurses.so \ - --replace-needed libtinfo.so libtinfo.so.5 \ - --interpreter "$(cat $NIX_CC/nix-support/dynamic-linker)" {} \; - - paxmark m ./ghc-${version}/ghc/stage2/build/tmp/ghc-stage2 - - sed -i "s|/usr/bin/perl|perl\x00 |" ghc-${version}/ghc/stage2/build/tmp/ghc-stage2 - sed -i "s|/usr/bin/gcc|gcc\x00 |" ghc-${version}/ghc/stage2/build/tmp/ghc-stage2 - ''; - - configurePlatforms = [ ]; - configureFlags = [ - "--with-gmp-libraries=${stdenv.lib.getLib gmp}/lib" - "--with-gmp-includes=${stdenv.lib.getDev gmp}/include" - ] ++ stdenv.lib.optional stdenv.isDarwin "--with-gcc=${./gcc-clang-wrapper.sh}"; - - # Stripping combined with patchelf breaks the executables (they die - # with a segfault or the kernel even refuses the execve). (NIXPKGS-85) - dontStrip = true; - - # No building is necessary, but calling make without flags ironically - # calls install-strip ... - dontBuild = true; - - # On Linux, use patchelf to modify the executables so that they can - # find editline/gmp. - preFixup = stdenv.lib.optionalString stdenv.isLinux '' - for p in $(find "$out" -type f -executable); do - if isELF "$p"; then - echo "Patchelfing $p" - patchelf --set-rpath "${libPath}:$(patchelf --print-rpath $p)" $p - fi - done - '' + stdenv.lib.optionalString stdenv.isDarwin '' - # not enough room in the object files for the full path to libiconv :( - for exe in $(find "$out" -type f -executable); do - isScript $exe && continue - ln -fs ${libiconv}/lib/libiconv.dylib $(dirname $exe)/libiconv.dylib - install_name_tool -change /usr/lib/libiconv.2.dylib @executable_path/libiconv.dylib -change /usr/local/lib/gcc/5/libgcc_s.1.dylib ${gcc.cc.lib}/lib/libgcc_s.1.dylib $exe - done - - for file in $(find "$out" -name setup-config); do - substituteInPlace $file --replace /usr/bin/ranlib "$(type -P ranlib)" - done - ''; - - doInstallCheck = true; - installCheckPhase = '' - unset ${libEnvVar} - # Sanity check, can ghc create executables? - cd $TMP - mkdir test-ghc; cd test-ghc - cat > main.hs << EOF - {-# LANGUAGE TemplateHaskell #-} - module Main where - main = putStrLn \$([|"yes"|]) - EOF - $out/bin/ghc --make main.hs || exit 1 - echo compilation ok - [ $(./main) == "yes" ] - ''; - - passthru = { - targetPrefix = ""; - enableShared = true; - }; - - meta.license = stdenv.lib.licenses.bsd3; - meta.platforms = ["x86_64-linux" "i686-linux" "x86_64-darwin" "armv7l-linux"]; -} diff --git a/pkgs/development/compilers/ghc/7.10.3.nix b/pkgs/development/compilers/ghc/7.10.3.nix deleted file mode 100644 index b69ae80d0db5ced077f64bb4d37377191c1d61a2..0000000000000000000000000000000000000000 --- a/pkgs/development/compilers/ghc/7.10.3.nix +++ /dev/null @@ -1,194 +0,0 @@ -{ stdenv, targetPackages - -# build-tools -, bootPkgs -, coreutils, fetchurl, perl -, docbook_xsl, docbook_xml_dtd_45, docbook_xml_dtd_42, libxml2, libxslt - -, libiconv ? null, ncurses - -, useLLVM ? !stdenv.targetPlatform.isx86 -, # LLVM is conceptually a run-time-only depedendency, but for - # non-x86, we need LLVM to bootstrap later stages, so it becomes a - # build-time dependency too. - buildLlvmPackages, llvmPackages - -, # If enabled, GHC will be built with the GPL-free but slower integer-simple - # library instead of the faster but GPLed integer-gmp library. - enableIntegerSimple ? !(stdenv.lib.any (stdenv.lib.meta.platformMatch stdenv.hostPlatform) gmp.meta.platforms), gmp - -, # If enabled, use -fPIC when compiling static libs. - enableRelocatedStaticLibs ? stdenv.targetPlatform != stdenv.hostPlatform - -, # Whether to build dynamic libs for the standard library (on the target - # platform). Static libs are always built. - enableShared ? true - -, # What flavour to build. An empty string indicates no - # specific flavour and falls back to ghc default values. - ghcFlavour ? stdenv.lib.optionalString (stdenv.targetPlatform != stdenv.hostPlatform) "perf-cross" -}: - -let - inherit (stdenv) buildPlatform hostPlatform targetPlatform; - - inherit (bootPkgs) ghc; - - # TODO(@Ericson2314) Make unconditional - targetPrefix = stdenv.lib.optionalString - (targetPlatform != hostPlatform) - "${targetPlatform.config}-"; - - docFixes = fetchurl { - url = "https://downloads.haskell.org/~ghc/7.10.3/ghc-7.10.3a.patch"; - sha256 = "1j45z4kcd3w1rzm4hapap2xc16bbh942qnzzdbdjcwqznsccznf0"; - }; - - buildMK = '' - BuildFlavour = ${ghcFlavour} - ifneq \"\$(BuildFlavour)\" \"\" - include mk/flavours/\$(BuildFlavour).mk - endif - DYNAMIC_GHC_PROGRAMS = ${if enableShared then "YES" else "NO"} - '' + stdenv.lib.optionalString enableIntegerSimple '' - INTEGER_LIBRARY = integer-simple - '' + stdenv.lib.optionalString (targetPlatform != hostPlatform) '' - Stage1Only = YES - HADDOCK_DOCS = NO - '' + stdenv.lib.optionalString enableRelocatedStaticLibs '' - GhcLibHcOpts += -fPIC - GhcRtsHcOpts += -fPIC - ''; - - # Splicer will pull out correct variations - libDeps = platform: [ ncurses ] - ++ stdenv.lib.optional (!enableIntegerSimple) gmp - ++ stdenv.lib.optional (platform.libc != "glibc") libiconv; - - toolsForTarget = - if hostPlatform == buildPlatform then - [ targetPackages.stdenv.cc ] ++ stdenv.lib.optional useLLVM llvmPackages.llvm - else assert targetPlatform == hostPlatform; # build != host == target - [ stdenv.cc ] ++ stdenv.lib.optional useLLVM buildLlvmPackages.llvm; - - targetCC = builtins.head toolsForTarget; - -in -stdenv.mkDerivation rec { - version = "7.10.3"; - name = "${targetPrefix}ghc-${version}"; - - src = fetchurl { - url = "https://downloads.haskell.org/~ghc/${version}/ghc-${version}-src.tar.xz"; - sha256 = "1vsgmic8csczl62ciz51iv8nhrkm72lyhbz7p7id13y2w7fcx46g"; - }; - - enableParallelBuilding = true; - - outputs = [ "out" "doc" ]; - - patches = [ - docFixes - ./relocation.patch - ]; - - postPatch = "patchShebangs ."; - - # GHC is a bit confused on its cross terminology. - preConfigure = '' - for env in $(env | grep '^TARGET_' | sed -E 's|\+?=.*||'); do - export "''${env#TARGET_}=''${!env}" - done - # GHC is a bit confused on its cross terminology, as these would normally be - # the *host* tools. - export CC="${targetCC}/bin/${targetCC.targetPrefix}cc" - export CXX="${targetCC}/bin/${targetCC.targetPrefix}cxx" - export LD="${targetCC.bintools}/bin/${targetCC.bintools.targetPrefix}ld" - export AS="${targetCC.bintools.bintools}/bin/${targetCC.bintools.targetPrefix}as" - export AR="${targetCC.bintools.bintools}/bin/${targetCC.bintools.targetPrefix}ar" - export NM="${targetCC.bintools.bintools}/bin/${targetCC.bintools.targetPrefix}nm" - export RANLIB="${targetCC.bintools.bintools}/bin/${targetCC.bintools.targetPrefix}ranlib" - export READELF="${targetCC.bintools.bintools}/bin/${targetCC.bintools.targetPrefix}readelf" - export STRIP="${targetCC.bintools.bintools}/bin/${targetCC.bintools.targetPrefix}strip" - - echo -n "${buildMK}" > mk/build.mk - sed -i -e 's|-isysroot /Developer/SDKs/MacOSX10.5.sdk||' configure - '' + stdenv.lib.optionalString (!stdenv.isDarwin) '' - export NIX_LDFLAGS+=" -rpath $out/lib/ghc-${version}" - '' + stdenv.lib.optionalString stdenv.isDarwin '' - export NIX_LDFLAGS+=" -no_dtrace_dof" - ''; - - # TODO(@Ericson2314): Always pass "--target" and always prefix. - configurePlatforms = [ "build" "host" ] - ++ stdenv.lib.optional (targetPlatform != hostPlatform) "target"; - # `--with` flags for libraries needed for RTS linker - configureFlags = [ - "--datadir=$doc/share/doc/ghc" - "--with-curses-includes=${ncurses.dev}/include" "--with-curses-libraries=${ncurses.out}/lib" - ] ++ stdenv.lib.optional (targetPlatform == hostPlatform && ! enableIntegerSimple) [ - "--with-gmp-includes=${gmp.dev}/include" "--with-gmp-libraries=${gmp.out}/lib" - ] ++ stdenv.lib.optional (targetPlatform == hostPlatform && hostPlatform.libc != "glibc") [ - "--with-iconv-includes=${libiconv}/include" "--with-iconv-libraries=${libiconv}/lib" - ] ++ stdenv.lib.optionals (targetPlatform != hostPlatform) [ - "--enable-bootstrap-with-devel-snapshot" - ] ++ stdenv.lib.optionals (targetPlatform.isDarwin && targetPlatform.isAarch64) [ - # fix for iOS: https://www.reddit.com/r/haskell/comments/4ttdz1/building_an_osxi386_to_iosarm64_cross_compiler/d5qvd67/ - "--disable-large-address-space" - ]; - - # Make sure we never relax`$PATH` and hooks support for compatability. - strictDeps = true; - - nativeBuildInputs = [ - perl libxml2 libxslt docbook_xsl docbook_xml_dtd_45 docbook_xml_dtd_42 - ghc bootPkgs.hscolour - ]; - - # For building runtime libs - depsBuildTarget = toolsForTarget; - - buildInputs = libDeps hostPlatform; - - propagatedBuildInputs = [ targetPackages.stdenv.cc ] - ++ stdenv.lib.optional useLLVM llvmPackages.llvm; - - depsTargetTarget = map stdenv.lib.getDev (libDeps targetPlatform); - depsTargetTargetPropagated = map (stdenv.lib.getOutput "out") (libDeps targetPlatform); - - # required, because otherwise all symbols from HSffi.o are stripped, and - # that in turn causes GHCi to abort - stripDebugFlags = [ "-S" ] ++ stdenv.lib.optional (!targetPlatform.isDarwin) "--keep-file-symbols"; - - hardeningDisable = [ "format" ]; - - postInstall = '' - # Install the bash completion file. - install -D -m 444 utils/completion/ghc.bash $out/share/bash-completion/completions/${targetPrefix}ghc - - # Patch scripts to include "readelf" and "cat" in $PATH. - for i in "$out/bin/"*; do - test ! -h $i || continue - egrep --quiet '^#!' <(head -n 1 $i) || continue - sed -i -e '2i export PATH="$PATH:${stdenv.lib.makeBinPath [ targetPackages.stdenv.cc.bintools coreutils ]}"' $i - done - ''; - - passthru = { - inherit bootPkgs targetPrefix; - - inherit llvmPackages; - inherit enableShared; - - # Our Cabal compiler name - haskellCompilerName = "ghc-7.10.3"; - }; - - meta = { - homepage = http://haskell.org/ghc; - description = "The Glasgow Haskell Compiler"; - maintainers = with stdenv.lib.maintainers; [ marcweber andres peti ]; - inherit (ghc.meta) license platforms; - }; - -} diff --git a/pkgs/development/compilers/ghc/8.0.2.nix b/pkgs/development/compilers/ghc/8.0.2.nix deleted file mode 100644 index f7422d150ac038b87891ddd918550f3f793dbec0..0000000000000000000000000000000000000000 --- a/pkgs/development/compilers/ghc/8.0.2.nix +++ /dev/null @@ -1,201 +0,0 @@ -{ stdenv, targetPackages - -# build-tools -, bootPkgs -, coreutils, fetchpatch, fetchurl, perl, sphinx - -, libiconv ? null, ncurses - -, useLLVM ? !stdenv.targetPlatform.isx86 -, # LLVM is conceptually a run-time-only depedendency, but for - # non-x86, we need LLVM to bootstrap later stages, so it becomes a - # build-time dependency too. - buildLlvmPackages, llvmPackages - -, # If enabled, GHC will be built with the GPL-free but slower integer-simple - # library instead of the faster but GPLed integer-gmp library. - enableIntegerSimple ? !(stdenv.lib.any (stdenv.lib.meta.platformMatch stdenv.hostPlatform) gmp.meta.platforms), gmp - -, # If enabled, use -fPIC when compiling static libs. - enableRelocatedStaticLibs ? stdenv.targetPlatform != stdenv.hostPlatform - -, # Whether to build dynamic libs for the standard library (on the target - # platform). Static libs are always built. - enableShared ? true - -, # What flavour to build. An empty string indicates no - # specific flavour and falls back to ghc default values. - ghcFlavour ? stdenv.lib.optionalString (stdenv.targetPlatform != stdenv.hostPlatform) "perf-cross" -}: - -assert !enableIntegerSimple -> gmp != null; - -let - inherit (stdenv) buildPlatform hostPlatform targetPlatform; - - inherit (bootPkgs) ghc; - - # TODO(@Ericson2314) Make unconditional - targetPrefix = stdenv.lib.optionalString - (targetPlatform != hostPlatform) - "${targetPlatform.config}-"; - - buildMK = '' - BuildFlavour = ${ghcFlavour} - ifneq \"\$(BuildFlavour)\" \"\" - include mk/flavours/\$(BuildFlavour).mk - endif - DYNAMIC_GHC_PROGRAMS = ${if enableShared then "YES" else "NO"} - INTEGER_LIBRARY = ${if enableIntegerSimple then "integer-simple" else "integer-gmp"} - '' + stdenv.lib.optionalString (targetPlatform != hostPlatform) '' - Stage1Only = YES - HADDOCK_DOCS = NO - '' + stdenv.lib.optionalString enableRelocatedStaticLibs '' - GhcLibHcOpts += -fPIC - GhcRtsHcOpts += -fPIC - ''; - - # Splicer will pull out correct variations - libDeps = platform: [ ncurses ] - ++ stdenv.lib.optional (!enableIntegerSimple) gmp - ++ stdenv.lib.optional (platform.libc != "glibc") libiconv; - - toolsForTarget = - if hostPlatform == buildPlatform then - [ targetPackages.stdenv.cc ] ++ stdenv.lib.optional useLLVM llvmPackages.llvm - else assert targetPlatform == hostPlatform; # build != host == target - [ stdenv.cc ] ++ stdenv.lib.optional useLLVM buildLlvmPackages.llvm; - - targetCC = builtins.head toolsForTarget; - -in -stdenv.mkDerivation rec { - version = "8.0.2"; - name = "${targetPrefix}ghc-${version}"; - - src = fetchurl { - url = "https://downloads.haskell.org/~ghc/${version}/ghc-${version}-src.tar.xz"; - sha256 = "1c8qc4fhkycynk4g1f9hvk53dj6a1vvqi6bklqznns6hw59m8qhi"; - }; - - enableParallelBuilding = true; - - outputs = [ "out" "man" "doc" ]; - - patches = [ - ./ghc-gold-linker.patch - (fetchpatch { # Unreleased 1.24.x commit - url = "https://github.com/haskell/cabal/commit/6394cb0b6eba91a8692a3d04b2b56935aed7cccd.patch"; - sha256 = "14xxjg0nb1j1pw0riac3v385ka92qhxxblfmwyvbghz7kry6axy0"; - stripLen = 1; - extraPrefix = "libraries/Cabal/"; - }) - ] ++ stdenv.lib.optional stdenv.isLinux ./ghc-no-madv-free.patch - ++ stdenv.lib.optional stdenv.isDarwin ./ghc-8.0.2-no-cpp-warnings.patch - ++ stdenv.lib.optional stdenv.isDarwin ./backport-dylib-command-size-limit.patch; - - postPatch = "patchShebangs ."; - - # GHC is a bit confused on its cross terminology. - preConfigure = '' - for env in $(env | grep '^TARGET_' | sed -E 's|\+?=.*||'); do - export "''${env#TARGET_}=''${!env}" - done - # GHC is a bit confused on its cross terminology, as these would normally be - # the *host* tools. - export CC="${targetCC}/bin/${targetCC.targetPrefix}cc" - export CXX="${targetCC}/bin/${targetCC.targetPrefix}cxx" - export LD="${targetCC.bintools}/bin/${targetCC.bintools.targetPrefix}ld" - export AS="${targetCC.bintools.bintools}/bin/${targetCC.bintools.targetPrefix}as" - export AR="${targetCC.bintools.bintools}/bin/${targetCC.bintools.targetPrefix}ar" - export NM="${targetCC.bintools.bintools}/bin/${targetCC.bintools.targetPrefix}nm" - export RANLIB="${targetCC.bintools.bintools}/bin/${targetCC.bintools.targetPrefix}ranlib" - export READELF="${targetCC.bintools.bintools}/bin/${targetCC.bintools.targetPrefix}readelf" - export STRIP="${targetCC.bintools.bintools}/bin/${targetCC.bintools.targetPrefix}strip" - - echo -n "${buildMK}" > mk/build.mk - sed -i -e 's|-isysroot /Developer/SDKs/MacOSX10.5.sdk||' configure - '' + stdenv.lib.optionalString (!stdenv.isDarwin) '' - export NIX_LDFLAGS+=" -rpath $out/lib/ghc-${version}" - '' + stdenv.lib.optionalString stdenv.isDarwin '' - export NIX_LDFLAGS+=" -no_dtrace_dof" - ''; - - # TODO(@Ericson2314): Always pass "--target" and always prefix. - configurePlatforms = [ "build" "host" ] - ++ stdenv.lib.optional (targetPlatform != hostPlatform) "target"; - # `--with` flags for libraries needed for RTS linker - configureFlags = [ - "--datadir=$doc/share/doc/ghc" - "--with-curses-includes=${ncurses.dev}/include" "--with-curses-libraries=${ncurses.out}/lib" - ] ++ stdenv.lib.optional (targetPlatform == hostPlatform && ! enableIntegerSimple) [ - "--with-gmp-includes=${targetPackages.gmp.dev}/include" "--with-gmp-libraries=${targetPackages.gmp.out}/lib" - ] ++ stdenv.lib.optional (targetPlatform == hostPlatform && hostPlatform.libc != "glibc") [ - "--with-iconv-includes=${libiconv}/include" "--with-iconv-libraries=${libiconv}/lib" - ] ++ stdenv.lib.optionals (targetPlatform != hostPlatform) [ - "--enable-bootstrap-with-devel-snapshot" - ] ++ stdenv.lib.optionals (targetPlatform.isDarwin && targetPlatform.isAarch64) [ - # fix for iOS: https://www.reddit.com/r/haskell/comments/4ttdz1/building_an_osxi386_to_iosarm64_cross_compiler/d5qvd67/ - "--disable-large-address-space" - ]; - - # Make sure we never relax`$PATH` and hooks support for compatability. - strictDeps = true; - - nativeBuildInputs = [ - perl sphinx - ghc bootPkgs.hscolour - ]; - - # For building runtime libs - depsBuildTarget = toolsForTarget; - - buildInputs = libDeps hostPlatform; - - propagatedBuildInputs = [ targetPackages.stdenv.cc ] - ++ stdenv.lib.optional useLLVM llvmPackages.llvm; - - depsTargetTarget = map stdenv.lib.getDev (libDeps targetPlatform); - depsTargetTargetPropagated = map (stdenv.lib.getOutput "out") (libDeps targetPlatform); - - # required, because otherwise all symbols from HSffi.o are stripped, and - # that in turn causes GHCi to abort - stripDebugFlags = [ "-S" ] ++ stdenv.lib.optional (!targetPlatform.isDarwin) "--keep-file-symbols"; - - hardeningDisable = [ "format" ]; - - postInstall = '' - for bin in "$out"/lib/${name}/bin/*; do - isELF "$bin" || continue - paxmark m "$bin" - done - - # Install the bash completion file. - install -D -m 444 utils/completion/ghc.bash $out/share/bash-completion/completions/${targetPrefix}ghc - - # Patch scripts to include "readelf" and "cat" in $PATH. - for i in "$out/bin/"*; do - test ! -h $i || continue - egrep --quiet '^#!' <(head -n 1 $i) || continue - sed -i -e '2i export PATH="$PATH:${stdenv.lib.makeBinPath [ targetPackages.stdenv.cc.bintools coreutils ]}"' $i - done - ''; - - passthru = { - inherit bootPkgs targetPrefix; - - inherit llvmPackages; - inherit enableShared; - - # Our Cabal compiler name - haskellCompilerName = "ghc-8.0.2"; - }; - - meta = { - homepage = http://haskell.org/ghc; - description = "The Glasgow Haskell Compiler"; - maintainers = with stdenv.lib.maintainers; [ marcweber andres peti ]; - inherit (ghc.meta) license platforms; - }; - -} diff --git a/pkgs/development/compilers/ghc/8.2.1-binary.nix b/pkgs/development/compilers/ghc/8.2.1-binary.nix index 6caeaf20f64c736aca62706df513448c479b4aaf..626c0d8ca9c2d867ef633bd5adf589f43d5e9fea 100644 --- a/pkgs/development/compilers/ghc/8.2.1-binary.nix +++ b/pkgs/development/compilers/ghc/8.2.1-binary.nix @@ -75,6 +75,7 @@ stdenv.mkDerivation rec { # Some scripts used during the build need to have their shebangs patched '' patchShebangs ghc-${version}/utils/ + patchShebangs ghc-${version}/configure '' + # Strip is harmful, see also below. It's important that this happens diff --git a/pkgs/development/compilers/ghc/8.4.3.nix b/pkgs/development/compilers/ghc/8.6.2.nix similarity index 90% rename from pkgs/development/compilers/ghc/8.4.3.nix rename to pkgs/development/compilers/ghc/8.6.2.nix index e43f9a57d0a457e61d8e560102928ff60ea32543..6470f7b029576c777678d4a0ea54368d790a1872 100644 --- a/pkgs/development/compilers/ghc/8.4.3.nix +++ b/pkgs/development/compilers/ghc/8.6.2.nix @@ -29,10 +29,6 @@ , # What flavour to build. An empty string indicates no # specific flavour and falls back to ghc default values. ghcFlavour ? stdenv.lib.optionalString (stdenv.targetPlatform != stdenv.hostPlatform) "perf-cross" -, # Whether to backport https://phabricator.haskell.org/D4388 for - # deterministic profiling symbol names, at the cost of a slightly - # non-standard GHC API - deterministicProfiling ? false }: assert !enableIntegerSimple -> gmp != null; @@ -82,34 +78,23 @@ let in stdenv.mkDerivation (rec { - version = "8.4.3"; + version = "8.6.2"; name = "${targetPrefix}ghc-${version}"; src = fetchurl { url = "https://downloads.haskell.org/~ghc/${version}/ghc-${version}-src.tar.xz"; - sha256 = "1mk046vb561j75saz05rghhbkps46ym5aci4264dwc2qk3dayixf"; + sha256 = "1mbn3n2ynmpfpb7jfnhpzzli31qqxqyi8ws71blws3i846fq3ana"; }; enableParallelBuilding = true; outputs = [ "out" "doc" ]; - patches = [(fetchpatch { - url = "https://git.haskell.org/hsc2hs.git/patch/738f3666c878ee9e79c3d5e819ef8b3460288edf"; - sha256 = "0plzsbfaq6vb1023lsarrjglwgr9chld4q3m99rcfzx0yx5mibp3"; - extraPrefix = "utils/hsc2hs/"; - stripLen = 1; - }) (fetchpatch rec { # https://phabricator.haskell.org/D5123 + patches = [(fetchpatch rec { # https://phabricator.haskell.org/D5123 url = "http://tarballs.nixos.org/sha256/${sha256}"; name = "D5123.diff"; sha256 = "0nhqwdamf2y4gbwqxcgjxs0kqx23w9gv5kj0zv6450dq19rji82n"; - })] ++ stdenv.lib.optional deterministicProfiling - (fetchpatch rec { - url = "http://tarballs.nixos.org/sha256/${sha256}"; - name = "D4388.diff"; - sha256 = "0w6sdcvnqjlnlzpvnzw20b80v150ijjyjvs9548ildc1928j0w7s"; - }) - ++ stdenv.lib.optional stdenv.isDarwin ./backport-dylib-command-size-limit.patch; + })]; postPatch = "patchShebangs ."; @@ -230,7 +215,7 @@ stdenv.mkDerivation (rec { inherit enableShared; # Our Cabal compiler name - haskellCompilerName = "ghc-8.4.3"; + haskellCompilerName = "ghc-8.6.2"; }; meta = { diff --git a/pkgs/development/compilers/ghc/ghc-8.0.2-no-cpp-warnings.patch b/pkgs/development/compilers/ghc/ghc-8.0.2-no-cpp-warnings.patch deleted file mode 100644 index 90224df19f61e0e53276d97f247b0ff483623f00..0000000000000000000000000000000000000000 --- a/pkgs/development/compilers/ghc/ghc-8.0.2-no-cpp-warnings.patch +++ /dev/null @@ -1,23 +0,0 @@ ---- b/includes/rts/storage/ClosureMacros.h 2017-05-21 12:54:09.000000000 +0200 -+++ a/includes/rts/storage/ClosureMacros.h 2017-05-21 12:55:57.000000000 +0200 -@@ -499,8 +499,17 @@ - - -------------------------------------------------------------------------- */ - --#define ZERO_SLOP_FOR_LDV_PROF (defined(PROFILING)) --#define ZERO_SLOP_FOR_SANITY_CHECK (defined(DEBUG) && !defined(THREADED_RTS)) -+#if defined(PROFILING) -+#define ZERO_SLOP_FOR_LDV_PROF 1 -+#else -+#define ZERO_SLOP_FOR_LDV_PROF 0 -+#endif -+ -+#if defined(DEBUG) && !defined(THREADED_RTS) -+#define ZERO_SLOP_FOR_SANITY_CHECK 1 -+#else -+#define ZERO_SLOP_FOR_SANITY_CHECK 0 -+#endif - - #if ZERO_SLOP_FOR_LDV_PROF || ZERO_SLOP_FOR_SANITY_CHECK - #define OVERWRITING_CLOSURE(c) overwritingClosure(c) - diff --git a/pkgs/development/compilers/ghc/ghc-gold-linker.patch b/pkgs/development/compilers/ghc/ghc-gold-linker.patch deleted file mode 100644 index edce7ef3a17824f7fe974686424b743ba0a8f87e..0000000000000000000000000000000000000000 --- a/pkgs/development/compilers/ghc/ghc-gold-linker.patch +++ /dev/null @@ -1,54 +0,0 @@ -From 46fe80ab7c0013a929d0934e61429820042a70a9 Mon Sep 17 00:00:00 2001 -From: =?UTF-8?q?Niklas=20Hamb=C3=BCchen?= -Date: Fri, 21 Jul 2017 20:09:11 +0200 -Subject: [PATCH 1/2] base: Add `extra-libraries: m` because base uses libm - functions. - -Linking with gold needs this because in contrast to ld, gold -doesn't implicitly link libm. - -Found by Michael Bishop . ---- - libraries/base/base.cabal | 4 ++++ - 1 file changed, 4 insertions(+) - -diff --git a/libraries/base/base.cabal b/libraries/base/base.cabal -index f00fb8768e5..fd91f268ffe 100644 ---- a/libraries/base/base.cabal -+++ b/libraries/base/base.cabal -@@ -342,6 +342,10 @@ Library - WCsubst.h - consUtils.h - -+ -- Base uses libm functions. ld.bfd links libm implicitly when necessary. -+ -- Other linkers, like gold, don't, so we have to declare it explicitly. -+ extra-libraries: m -+ - -- OS Specific - if os(windows) - -- Windows requires some extra libraries for linking because the RTS - -From 900a8f4931e9bc6d3219d9263cfecfc6af8fc766 Mon Sep 17 00:00:00 2001 -From: michael bishop -Date: Sat, 22 Jul 2017 13:12:39 -0300 -Subject: [PATCH 2/2] also add -lm to ghc-prim - ---- - libraries/ghc-prim/ghc-prim.cabal | 4 ++++ - 1 file changed, 4 insertions(+) - -diff --git a/libraries/ghc-prim/ghc-prim.cabal b/libraries/ghc-prim/ghc-prim.cabal -index 00a029efedf..6db85dd69fc 100644 ---- a/libraries/ghc-prim/ghc-prim.cabal -+++ b/libraries/ghc-prim/ghc-prim.cabal -@@ -42,6 +42,10 @@ Library - UnliftedFFITypes - - build-depends: rts == 1.0.* -+ -+ -- Base uses libm functions. ld.bfd links libm implicitly when necessary. -+ -- Other linkers, like gold, don't, so we have to declare it explicitly. -+ extra-libraries: m - - exposed-modules: - GHC.CString diff --git a/pkgs/development/compilers/ghc/ghc-no-madv-free.patch b/pkgs/development/compilers/ghc/ghc-no-madv-free.patch deleted file mode 100644 index 8fea9f920126a20feb2f285c41bf5451c9ebb31f..0000000000000000000000000000000000000000 --- a/pkgs/development/compilers/ghc/ghc-no-madv-free.patch +++ /dev/null @@ -1,18 +0,0 @@ -diff --git a/rts/posix/OSMem.c b/rts/posix/OSMem.c -index 99620ee..e052a84 100644 ---- a/rts/posix/OSMem.c -+++ b/rts/posix/OSMem.c -@@ -523,13 +523,7 @@ void osDecommitMemory(void *at, W_ size) - sysErrorBelch("unable to make released memory unaccessible"); - #endif - --#ifdef MADV_FREE -- // Try MADV_FREE first, FreeBSD has both and MADV_DONTNEED -- // just swaps memory out -- r = madvise(at, size, MADV_FREE); --#else - r = madvise(at, size, MADV_DONTNEED); --#endif - if(r < 0) - sysErrorBelch("unable to decommit memory"); - } diff --git a/pkgs/development/compilers/ghc/relocation.patch b/pkgs/development/compilers/ghc/relocation.patch deleted file mode 100644 index b9becfc86b5439a27db9e410de97b5d85425bded..0000000000000000000000000000000000000000 --- a/pkgs/development/compilers/ghc/relocation.patch +++ /dev/null @@ -1,27 +0,0 @@ -Adding support for the R_X86_64_REX_GOTPCRELX relocation type. -This relocation is treated by the linker the same as the R_X86_64_GOTPCRELX type -G + GOT + A - P to generate relative offsets to the GOT. -The REX prefix has no influence in this stage. - -This caused breakage when enabling relro/bindnow hardening e.g. in ghcPaclages.vector - -Source: https://phabricator.haskell.org/D2303#67070 -diff --git a/rts/Linker.c b/rts/Linker.c ---- a/rts/Linker.c -+++ b/rts/Linker.c -@@ -5681,7 +5681,13 @@ - *(Elf64_Sword *)P = (Elf64_Sword)value; - #endif - break; -- -+/* These two relocations were introduced in glibc 2.23 and binutils 2.26. -+ But in order to use them the system which compiles the bindist for GHC needs -+ to have glibc >= 2.23. So only use them if they're defined. */ -+#if defined(R_X86_64_REX_GOTPCRELX) && defined(R_X86_64_GOTPCRELX) -+ case R_X86_64_REX_GOTPCRELX: -+ case R_X86_64_GOTPCRELX: -+#endif - case R_X86_64_GOTPCREL: - { - StgInt64 gotAddress = (StgInt64) &makeSymbolExtra(oc, ELF_R_SYM(info), S)->addr; - diff --git a/pkgs/development/compilers/ghcjs/7.10/boot.patch b/pkgs/development/compilers/ghcjs/7.10/boot.patch deleted file mode 100644 index 9f4fa3a8b7ae48597c88c4a94585476054473b10..0000000000000000000000000000000000000000 --- a/pkgs/development/compilers/ghcjs/7.10/boot.patch +++ /dev/null @@ -1,104 +0,0 @@ -diff --git a/src-bin/Boot.hs b/src-bin/Boot.hs -index db8b12e..7b815c5 100644 ---- a/src-bin/Boot.hs -+++ b/src-bin/Boot.hs -@@ -540,9 +540,7 @@ initPackageDB :: B () - initPackageDB = do - msg info "creating package databases" - initDB "--global" <^> beLocations . blGlobalDB -- traverseOf_ _Just initUser <^> beLocations . blUserDBDir - where -- initUser dir = rm_f (dir "package.conf") >> initDB "--user" (dir "package.conf.d") - initDB dbName db = do - rm_rf db >> mkdir_p db - ghcjs_pkg_ ["init", toTextI db] `catchAny_` return () -@@ -566,29 +564,22 @@ installDevelopmentTree = subTop $ do - msgD info $ "preparing development boot tree" - checkpoint' "ghcjs-boot-git" "ghcjs-boot repository already cloned and prepared" $ do - testGit "ghcjs-boot" >>= \case -- Just False -> failWith "ghcjs-boot already exists and is not a git repository" -- Just True -> do -- msg info "ghcjs-boot repository already exists but checkpoint not reached, cleaning first, then cloning" -- rm_rf "ghcjs-boot" -+ Just _ -> do -+ msg info "ghcjs-boot repository already exists; initializing ghcjs-boot" - initGhcjsBoot - Nothing -> do - msgD info "cloning ghcjs-boot git repository" - initGhcjsBoot - checkpoint' "shims-git" "shims repository already cloned" $ do - testGit "shims" >>= \case -- Just False -> failWith "shims already exists and is not a git repository" -- Just True -> do -- msgD info "shims repository already exists but checkpoint not reached, cleaning first, then cloning" -- rm_rf "shims" -- cloneGit shimsDescr "shims" bsrcShimsDevBranch bsrcShimsDev -+ Just _ -> do -+ msgD info "shims repository already exists; moving on" - Nothing -> do - msgD info "cloning shims git repository" - cloneGit shimsDescr "shims" bsrcShimsDevBranch bsrcShimsDev - where - initGhcjsBoot = sub $ do -- cloneGit bootDescr "ghcjs-boot" bsrcBootDevBranch bsrcBootDev - cd "ghcjs-boot" -- git_ ["submodule", "update", "--init", "--recursive"] - mapM_ patchPackage =<< allPackages - preparePrimops - buildGenPrim -@@ -1141,7 +1132,7 @@ cabalStage1 pkgs = sub $ do - globalFlags <- cabalGlobalFlags - flags <- cabalInstallFlags (length pkgs == 1) - let args = globalFlags ++ ("install" : pkgs) ++ -- [ "--solver=topdown" -- the modular solver refuses to install stage1 packages -+ [ "--allow-boot-library-installs" - ] ++ map ("--configure-option="<>) configureOpts ++ flags - checkInstallPlan pkgs args - cabal_ args -@@ -1162,7 +1153,7 @@ cabalInstall pkgs = do - -- uses somewhat fragile parsing of --dry-run output, find a better way - checkInstallPlan :: [Package] -> [Text] -> B () - checkInstallPlan pkgs opts = do -- plan <- cabal (opts ++ ["-v2", "--dry-run"]) -+ plan <- cabal (opts ++ ["-vverbose+nowrap", "--dry-run"]) - when (hasReinstalls plan || hasUnexpectedInstalls plan || hasNewVersion plan) (err plan) - where - hasReinstalls = T.isInfixOf "(reinstall)" -- reject reinstalls -@@ -1201,14 +1192,14 @@ cabalInstallFlags parmakeGhcjs = do - , "--avoid-reinstalls" - , "--builddir", "dist" - , "--with-compiler", ghcjs ^. pgmLocText -+ , "--with-gcc", "@CC@" - , "--with-hc-pkg", ghcjsPkg ^. pgmLocText -- , "--prefix", toTextI instDir -+ , "--prefix", "@PREFIX@" -+ , "--libdir", "$prefix/lib/$compiler" -+ , "--libsubdir", "$pkgid" - , bool haddock "--enable-documentation" "--disable-documentation" - , "--haddock-html" ---- workaround for hoogle support being broken in haddock for GHC 7.10RC1 --#if !(__GLASGOW_HASKELL__ >= 709) - , "--haddock-hoogle" --#endif - , "--haddock-hyperlink-source" - -- don't slow down Windows builds too much, on other platforms we get this more - -- or less for free, thanks to dynamic-too -diff --git a/src/Compiler/Info.hs b/src/Compiler/Info.hs -index 33a401f..e2405a7 100644 ---- a/src/Compiler/Info.hs -+++ b/src/Compiler/Info.hs -@@ -48,13 +48,7 @@ compilerInfo nativeToo dflags = do - - -- | the directory to use if started without -B flag - getDefaultTopDir :: IO FilePath --getDefaultTopDir = do -- appdir <- getAppUserDataDirectory "ghcjs" -- return (appdir subdir "ghcjs") -- where -- targetARCH = arch -- targetOS = os -- subdir = targetARCH ++ '-':targetOS ++ '-':getFullCompilerVersion -+getDefaultTopDir = return "@PREFIX@/lib/ghcjs-@VERSION@" - - getDefaultLibDir :: IO FilePath - getDefaultLibDir = getDefaultTopDir diff --git a/pkgs/development/compilers/ghcjs/7.10/default.nix b/pkgs/development/compilers/ghcjs/7.10/default.nix deleted file mode 100644 index f18a094aa3cfd0834587df0a36e022266b526f87..0000000000000000000000000000000000000000 --- a/pkgs/development/compilers/ghcjs/7.10/default.nix +++ /dev/null @@ -1,50 +0,0 @@ -{ fetchgit, fetchFromGitHub, bootPkgs, cabal-install }: - -bootPkgs.callPackage ../base.nix { - version = "0.2.0"; - - inherit bootPkgs cabal-install; - - ghcjsSrc = fetchFromGitHub { - owner = "ghcjs"; - repo = "ghcjs"; - rev = "689c7753f50353dd05606ed79c51cd5a94d3922a"; - sha256 = "076020a9gjv8ldj5ckm43sbzq9s6c5xj6lpd8v28ybpiama3m6b4"; - }; - ghcjsBootSrc = fetchgit { - url = git://github.com/ghcjs/ghcjs-boot.git; - rev = "8c549931da27ba9e607f77195208ec156c840c8a"; - sha256 = "0yg9bnabja39qysh9pg1335qbvbc0r2mdw6cky94p7kavacndfdv"; - fetchSubmodules = true; - }; - - shims = import ./shims.nix { inherit fetchFromGitHub; }; - stage1Packages = [ - "array" - "base" - "binary" - "bytestring" - "containers" - "deepseq" - "directory" - "filepath" - "ghc-boot" - "ghc-boot-th" - "ghc-prim" - "ghci" - "ghcjs-prim" - "ghcjs-th" - "integer-gmp" - "pretty" - "primitive" - "process" - "rts" - "template-haskell" - "time" - "transformers" - "unix" - ]; - stage2 = import ./stage2.nix; - - patches = [ ./boot.patch ]; -} diff --git a/pkgs/development/compilers/ghcjs/7.10/shims.nix b/pkgs/development/compilers/ghcjs/7.10/shims.nix deleted file mode 100644 index fa706699449a7950176c4145e672bc0a7245a130..0000000000000000000000000000000000000000 --- a/pkgs/development/compilers/ghcjs/7.10/shims.nix +++ /dev/null @@ -1,7 +0,0 @@ -{ fetchFromGitHub }: -fetchFromGitHub { - owner = "ghcjs"; - repo = "shims"; - rev = "b97015229c58eeab7c1d0bb575794b14a9f6efca"; - sha256 = "1p5adkqvmb1gsv9hnn3if0rdpnaq3v9a1zkfdy282yw05jaaaggz"; -} diff --git a/pkgs/development/compilers/ghcjs/7.10/stage2.nix b/pkgs/development/compilers/ghcjs/7.10/stage2.nix deleted file mode 100644 index 3483afc99ef0b978dae63b4fa0ea4adf94e7803e..0000000000000000000000000000000000000000 --- a/pkgs/development/compilers/ghcjs/7.10/stage2.nix +++ /dev/null @@ -1,344 +0,0 @@ -{ ghcjsBoot }: { callPackage }: - -{ - async = callPackage - ({ mkDerivation, base, HUnit, stdenv, stm, test-framework - , test-framework-hunit - }: - mkDerivation { - pname = "async"; - version = "2.0.1.6"; - src = "${ghcjsBoot}/boot/async"; - doCheck = false; - libraryHaskellDepends = [ base stm ]; - testHaskellDepends = [ - base HUnit test-framework test-framework-hunit - ]; - jailbreak = true; - homepage = https://github.com/simonmar/async; - description = "Run IO operations asynchronously and wait for their results"; - license = stdenv.lib.licenses.bsd3; - }) {}; - aeson = callPackage - ({ mkDerivation, attoparsec, base, bytestring, containers, deepseq - , dlist, ghc-prim, hashable, HUnit, mtl, QuickCheck, scientific - , stdenv, syb, template-haskell, test-framework - , test-framework-hunit, test-framework-quickcheck2, text, time - , transformers, unordered-containers, vector - }: - mkDerivation { - pname = "aeson"; - version = "0.9.0.1"; - src = "${ghcjsBoot}/boot/aeson"; - doCheck = false; - libraryHaskellDepends = [ - attoparsec base bytestring containers deepseq dlist ghc-prim - hashable mtl scientific syb template-haskell text time transformers - unordered-containers vector - ]; - testHaskellDepends = [ - attoparsec base bytestring containers ghc-prim HUnit QuickCheck - template-haskell test-framework test-framework-hunit - test-framework-quickcheck2 text time unordered-containers vector - ]; - jailbreak = true; - homepage = https://github.com/bos/aeson; - description = "Fast JSON parsing and encoding"; - license = stdenv.lib.licenses.bsd3; - }) {}; - attoparsec = callPackage - ({ mkDerivation, array, base, bytestring, containers, deepseq - , QuickCheck, quickcheck-unicode, scientific, stdenv - , test-framework, test-framework-quickcheck2, text, transformers - , vector - }: - mkDerivation { - pname = "attoparsec"; - version = "0.13.0.1"; - src = "${ghcjsBoot}/boot/attoparsec"; - doCheck = false; - libraryHaskellDepends = [ - array base bytestring containers deepseq scientific text - transformers - ]; - testHaskellDepends = [ - array base bytestring containers deepseq QuickCheck - quickcheck-unicode scientific test-framework - test-framework-quickcheck2 text transformers vector - ]; - jailbreak = true; - homepage = https://github.com/bos/attoparsec; - description = "Fast combinator parsing for bytestrings and text"; - license = stdenv.lib.licenses.bsd3; - }) {}; - case-insensitive = callPackage - ({ mkDerivation, base, bytestring, deepseq, hashable, HUnit, stdenv - , test-framework, test-framework-hunit, text - }: - mkDerivation { - pname = "case-insensitive"; - version = "1.2.0.4"; - src = "${ghcjsBoot}/boot/case-insensitive"; - doCheck = false; - libraryHaskellDepends = [ base bytestring deepseq hashable text ]; - testHaskellDepends = [ - base bytestring HUnit test-framework test-framework-hunit text - ]; - jailbreak = true; - homepage = https://github.com/basvandijk/case-insensitive; - description = "Case insensitive string comparison"; - license = stdenv.lib.licenses.bsd3; - }) {}; - dlist = callPackage - ({ mkDerivation, base, Cabal, deepseq, QuickCheck, stdenv }: - mkDerivation { - pname = "dlist"; - version = "0.7.1.1"; - src = "${ghcjsBoot}/boot/dlist"; - doCheck = false; - libraryHaskellDepends = [ base deepseq ]; - testHaskellDepends = [ base Cabal QuickCheck ]; - jailbreak = true; - homepage = https://github.com/spl/dlist; - description = "Difference lists"; - license = stdenv.lib.licenses.bsd3; - }) {}; - extensible-exceptions = callPackage - ({ mkDerivation, base, stdenv }: - mkDerivation { - pname = "extensible-exceptions"; - version = "0.1.1.4"; - src = "${ghcjsBoot}/boot/extensible-exceptions"; - doCheck = false; - libraryHaskellDepends = [ base ]; - jailbreak = true; - description = "Extensible exceptions"; - license = stdenv.lib.licenses.bsd3; - }) {}; - hashable = callPackage - ({ mkDerivation, base, bytestring, ghc-prim, HUnit, integer-gmp - , QuickCheck, random, stdenv, test-framework, test-framework-hunit - , test-framework-quickcheck2, text, unix - }: - mkDerivation { - pname = "hashable"; - version = "1.2.3.2"; - src = "${ghcjsBoot}/boot/hashable"; - doCheck = false; - libraryHaskellDepends = [ - base bytestring ghc-prim integer-gmp text - ]; - testHaskellDepends = [ - base bytestring ghc-prim HUnit QuickCheck random test-framework - test-framework-hunit test-framework-quickcheck2 text unix - ]; - jailbreak = true; - homepage = https://github.com/tibbe/hashable; - description = "A class for types that can be converted to a hash value"; - license = stdenv.lib.licenses.bsd3; - }) {}; - mtl = callPackage - ({ mkDerivation, base, stdenv, transformers }: - mkDerivation { - pname = "mtl"; - version = "2.2.1"; - src = "${ghcjsBoot}/boot/mtl"; - doCheck = false; - libraryHaskellDepends = [ base transformers ]; - jailbreak = true; - homepage = https://github.com/ekmett/mtl; - description = "Monad classes, using functional dependencies"; - license = stdenv.lib.licenses.bsd3; - }) {}; - old-time = callPackage - ({ mkDerivation, base, old-locale, stdenv }: - mkDerivation { - pname = "old-time"; - version = "1.1.0.3"; - src = "${ghcjsBoot}/boot/old-time"; - doCheck = false; - libraryHaskellDepends = [ base old-locale ]; - jailbreak = true; - description = "Time library"; - license = stdenv.lib.licenses.bsd3; - }) {}; - parallel = callPackage - ({ mkDerivation, array, base, containers, deepseq, stdenv }: - mkDerivation { - pname = "parallel"; - version = "3.2.0.6"; - src = "${ghcjsBoot}/boot/parallel"; - doCheck = false; - libraryHaskellDepends = [ array base containers deepseq ]; - jailbreak = true; - description = "Parallel programming library"; - license = stdenv.lib.licenses.bsd3; - }) {}; - scientific = callPackage - ({ mkDerivation, array, base, bytestring, deepseq, ghc-prim - , hashable, integer-gmp, QuickCheck, smallcheck, stdenv, tasty - , tasty-ant-xml, tasty-hunit, tasty-quickcheck, tasty-smallcheck - , text - }: - mkDerivation { - pname = "scientific"; - version = "0.3.3.8"; - src = "${ghcjsBoot}/boot/scientific"; - doCheck = false; - libraryHaskellDepends = [ - array base bytestring deepseq ghc-prim hashable integer-gmp text - ]; - testHaskellDepends = [ - base bytestring QuickCheck smallcheck tasty tasty-ant-xml - tasty-hunit tasty-quickcheck tasty-smallcheck text - ]; - jailbreak = true; - homepage = https://github.com/basvandijk/scientific; - description = "Numbers represented using scientific notation"; - license = stdenv.lib.licenses.bsd3; - }) {}; - stm = callPackage - ({ mkDerivation, array, base, stdenv }: - mkDerivation { - pname = "stm"; - version = "2.4.4"; - src = "${ghcjsBoot}/boot/stm"; - doCheck = false; - libraryHaskellDepends = [ array base ]; - jailbreak = true; - description = "Software Transactional Memory"; - license = stdenv.lib.licenses.bsd3; - }) {}; - syb = callPackage - ({ mkDerivation, base, containers, HUnit, mtl, stdenv }: - mkDerivation { - pname = "syb"; - version = "0.5.1"; - src = "${ghcjsBoot}/boot/syb"; - doCheck = false; - libraryHaskellDepends = [ base ]; - testHaskellDepends = [ base containers HUnit mtl ]; - jailbreak = true; - homepage = http://www.cs.uu.nl/wiki/GenericProgramming/SYB; - description = "Scrap Your Boilerplate"; - license = stdenv.lib.licenses.bsd3; - }) {}; - text = callPackage - ({ mkDerivation, array, base, binary, bytestring, deepseq, directory - , ghc-prim, HUnit, integer-gmp, QuickCheck, quickcheck-unicode - , random, stdenv, test-framework, test-framework-hunit - , test-framework-quickcheck2 - }: - mkDerivation { - pname = "text"; - version = "1.2.1.1"; - src = "${ghcjsBoot}/boot/text"; - doCheck = false; - libraryHaskellDepends = [ - array base binary bytestring deepseq ghc-prim integer-gmp - ]; - testHaskellDepends = [ - array base binary bytestring deepseq directory ghc-prim HUnit - integer-gmp QuickCheck quickcheck-unicode random test-framework - test-framework-hunit test-framework-quickcheck2 - ]; - jailbreak = true; - homepage = https://github.com/bos/text; - description = "An efficient packed Unicode text type"; - license = stdenv.lib.licenses.bsd3; - }) {}; - unordered-containers = callPackage - ({ mkDerivation, base, ChasingBottoms, containers, deepseq, hashable - , HUnit, QuickCheck, stdenv, test-framework, test-framework-hunit - , test-framework-quickcheck2 - }: - mkDerivation { - pname = "unordered-containers"; - version = "0.2.5.1"; - src = "${ghcjsBoot}/boot/unordered-containers"; - doCheck = false; - libraryHaskellDepends = [ base deepseq hashable ]; - testHaskellDepends = [ - base ChasingBottoms containers hashable HUnit QuickCheck - test-framework test-framework-hunit test-framework-quickcheck2 - ]; - jailbreak = true; - homepage = https://github.com/tibbe/unordered-containers; - description = "Efficient hashing-based container types"; - license = stdenv.lib.licenses.bsd3; - }) {}; - vector = callPackage - ({ mkDerivation, base, deepseq, ghc-prim, primitive, QuickCheck - , random, stdenv, template-haskell, test-framework - , test-framework-quickcheck2, transformers - }: - mkDerivation { - pname = "vector"; - version = "0.11.0.0"; - src = "${ghcjsBoot}/boot/vector"; - doCheck = false; - libraryHaskellDepends = [ base deepseq ghc-prim primitive ]; - testHaskellDepends = [ - base QuickCheck random template-haskell test-framework - test-framework-quickcheck2 transformers - ]; - jailbreak = true; - homepage = https://github.com/haskell/vector; - description = "Efficient Arrays"; - license = stdenv.lib.licenses.bsd3; - }) {}; - ghcjs-base = callPackage - ({ mkDerivation, aeson, array, attoparsec, base, bytestring - , containers, deepseq, directory, dlist, ghc-prim, ghcjs-prim - , hashable, HUnit, integer-gmp, primitive, QuickCheck - , quickcheck-unicode, random, scientific, stdenv, test-framework - , test-framework-hunit, test-framework-quickcheck2, text, time - , transformers, unordered-containers, vector - }: - mkDerivation { - pname = "ghcjs-base"; - version = "0.2.0.0"; - src = "${ghcjsBoot}/ghcjs/ghcjs-base"; - doCheck = false; - libraryHaskellDepends = [ - aeson attoparsec base bytestring containers deepseq dlist ghc-prim - ghcjs-prim hashable integer-gmp primitive scientific text time - transformers unordered-containers vector - ]; - testHaskellDepends = [ - array base bytestring deepseq directory ghc-prim ghcjs-prim HUnit - primitive QuickCheck quickcheck-unicode random test-framework - test-framework-hunit test-framework-quickcheck2 text - ]; - jailbreak = true; - homepage = https://github.com/ghcjs/ghcjs-base; - description = "Base library for GHCJS"; - license = stdenv.lib.licenses.mit; - }) {}; - Cabal = callPackage - ({ mkDerivation, array, base, binary, bytestring, containers - , deepseq, directory, extensible-exceptions, filepath, HUnit - , old-time, pretty, process, QuickCheck, regex-posix, stdenv - , test-framework, test-framework-hunit, test-framework-quickcheck2 - , time, unix - }: - mkDerivation { - pname = "Cabal"; - version = "1.22.8.0"; - src = "${ghcjsBoot}/boot/cabal/Cabal"; - doCheck = false; - libraryHaskellDepends = [ - array base binary bytestring containers deepseq directory filepath - pretty process time unix - ]; - testHaskellDepends = [ - base bytestring containers directory extensible-exceptions filepath - HUnit old-time process QuickCheck regex-posix test-framework - test-framework-hunit test-framework-quickcheck2 unix - ]; - jailbreak = true; - homepage = http://www.haskell.org/cabal/; - description = "A framework for packaging Haskell software"; - license = stdenv.lib.licenses.bsd3; - }) {}; -} diff --git a/pkgs/development/compilers/ghcjs/8.0/boot.patch b/pkgs/development/compilers/ghcjs/8.0/boot.patch deleted file mode 100644 index bbb5b30468cb9ddace8015c2b839e9a2f287962e..0000000000000000000000000000000000000000 --- a/pkgs/development/compilers/ghcjs/8.0/boot.patch +++ /dev/null @@ -1,86 +0,0 @@ -diff --git a/src-bin/Boot.hs b/src-bin/Boot.hs -index db8b12e..7b815c5 100644 ---- a/src-bin/Boot.hs -+++ b/src-bin/Boot.hs -@@ -540,9 +540,7 @@ initPackageDB :: B () - initPackageDB = do - msg info "creating package databases" - initDB "--global" <^> beLocations . blGlobalDB -- traverseOf_ _Just initUser <^> beLocations . blUserDBDir - where -- initUser dir = rm_f (dir "package.conf") >> initDB "--user" (dir "package.conf.d") - initDB dbName db = do - rm_rf db >> mkdir_p db - ghcjs_pkg_ ["init", toTextI db] `catchAny_` return () -@@ -566,29 +564,22 @@ installDevelopmentTree = subTop $ do - msgD info $ "preparing development boot tree" - checkpoint' "ghcjs-boot-git" "ghcjs-boot repository already cloned and prepared" $ do - testGit "ghcjs-boot" >>= \case -- Just False -> failWith "ghcjs-boot already exists and is not a git repository" -- Just True -> do -- msg info "ghcjs-boot repository already exists but checkpoint not reached, cleaning first, then cloning" -- rm_rf "ghcjs-boot" -+ Just _ -> do -+ msg info "ghcjs-boot repository already exists; initializing ghcjs-boot" - initGhcjsBoot - Nothing -> do - msgD info "cloning ghcjs-boot git repository" - initGhcjsBoot - checkpoint' "shims-git" "shims repository already cloned" $ do - testGit "shims" >>= \case -- Just False -> failWith "shims already exists and is not a git repository" -- Just True -> do -- msgD info "shims repository already exists but checkpoint not reached, cleaning first, then cloning" -- rm_rf "shims" -- cloneGit shimsDescr "shims" bsrcShimsDevBranch bsrcShimsDev -+ Just _ -> do -+ msgD info "shims repository already exists; moving on" - Nothing -> do - msgD info "cloning shims git repository" - cloneGit shimsDescr "shims" bsrcShimsDevBranch bsrcShimsDev - where - initGhcjsBoot = sub $ do -- cloneGit bootDescr "ghcjs-boot" bsrcBootDevBranch bsrcBootDev - cd "ghcjs-boot" -- git_ ["submodule", "update", "--init", "--recursive"] - mapM_ patchPackage =<< allPackages - preparePrimops - buildGenPrim -@@ -1201,14 +1192,14 @@ cabalInstallFlags parmakeGhcjs = do - , "--avoid-reinstalls" - , "--builddir", "dist" - , "--with-compiler", ghcjs ^. pgmLocText -+ , "--with-gcc", "@CC@" - , "--with-hc-pkg", ghcjsPkg ^. pgmLocText -- , "--prefix", toTextI instDir -+ , "--prefix", "@PREFIX@" -+ , "--libdir", "$prefix/lib/$compiler" -+ , "--libsubdir", "$pkgid" - , bool haddock "--enable-documentation" "--disable-documentation" - , "--haddock-html" ---- workaround for hoogle support being broken in haddock for GHC 7.10RC1 --#if !(__GLASGOW_HASKELL__ >= 709) - , "--haddock-hoogle" --#endif - , "--haddock-hyperlink-source" - -- don't slow down Windows builds too much, on other platforms we get this more - -- or less for free, thanks to dynamic-too -diff --git a/src/Compiler/Info.hs b/src/Compiler/Info.hs -index 33a401f..e2405a7 100644 ---- a/src/Compiler/Info.hs -+++ b/src/Compiler/Info.hs -@@ -48,13 +48,7 @@ compilerInfo nativeToo dflags = do - - -- | the directory to use if started without -B flag - getDefaultTopDir :: IO FilePath --getDefaultTopDir = do -- appdir <- getAppUserDataDirectory "ghcjs" -- return (appdir subdir "ghcjs") -- where -- targetARCH = arch -- targetOS = os -- subdir = targetARCH ++ '-':targetOS ++ '-':getFullCompilerVersion -+getDefaultTopDir = return "@PREFIX@/lib/ghcjs-@VERSION@" - - getDefaultLibDir :: IO FilePath - getDefaultLibDir = getDefaultTopDir diff --git a/pkgs/development/compilers/ghcjs/8.0/default.nix b/pkgs/development/compilers/ghcjs/8.0/default.nix deleted file mode 100644 index a786f536eb9b30f9aafcf355ee057407c7216715..0000000000000000000000000000000000000000 --- a/pkgs/development/compilers/ghcjs/8.0/default.nix +++ /dev/null @@ -1,50 +0,0 @@ -{ fetchgit, fetchFromGitHub, bootPkgs, cabal-install }: - -bootPkgs.callPackage ../base.nix { - version = "0.2.020170323"; - - inherit bootPkgs cabal-install; - - ghcjsSrc = fetchFromGitHub { - owner = "ghcjs"; - repo = "ghcjs"; - rev = "2b3759942fb5b2fc1a58d314d9b098d4622fa6b6"; - sha256 = "15asapg0va8dvcdycsx8dgk4xcpdnhml4h31wka6vvxf5anzz8aw"; - }; - ghcjsBootSrc = fetchgit { - url = git://github.com/ghcjs/ghcjs-boot.git; - rev = "106e144cca6529a1b9612c11aea5d6ef65b96745"; - sha256 = "0gxg8iiwvm93x1dwhxypczn9qiz4m1xvj8i7cf4snfdy2jdyhi5l"; - fetchSubmodules = true; - }; - - shims = import ./shims.nix { inherit fetchFromGitHub; }; - stage1Packages = [ - "array" - "base" - "binary" - "bytestring" - "containers" - "deepseq" - "directory" - "filepath" - "ghc-boot" - "ghc-boot-th" - "ghc-prim" - "ghci" - "ghcjs-prim" - "ghcjs-th" - "integer-gmp" - "pretty" - "primitive" - "process" - "rts" - "template-haskell" - "time" - "transformers" - "unix" - ]; - stage2 = import ./stage2.nix; - - patches = [ ./boot.patch ]; -} diff --git a/pkgs/development/compilers/ghcjs/8.0/shims.nix b/pkgs/development/compilers/ghcjs/8.0/shims.nix deleted file mode 100644 index a9a7f8d45e2741f723b5928494c5fe85d6784479..0000000000000000000000000000000000000000 --- a/pkgs/development/compilers/ghcjs/8.0/shims.nix +++ /dev/null @@ -1,7 +0,0 @@ -{ fetchFromGitHub }: -fetchFromGitHub { - owner = "ghcjs"; - repo = "shims"; - rev = "85395dce971e23a39e5f93af4ed139ca36d4e448"; - sha256 = "1kqgik75jx681s1kjx1s7dryigr3m940c3zb9vy0r3psxrw6sf2g"; -} diff --git a/pkgs/development/compilers/ghcjs/8.0/stage2.nix b/pkgs/development/compilers/ghcjs/8.0/stage2.nix deleted file mode 100644 index 18c7a76dd3afa27644cf9707884f10436482979f..0000000000000000000000000000000000000000 --- a/pkgs/development/compilers/ghcjs/8.0/stage2.nix +++ /dev/null @@ -1,545 +0,0 @@ -{ ghcjsBoot }: { callPackage }: - -{ - async = callPackage - ({ mkDerivation, base, HUnit, stdenv, stm, test-framework - , test-framework-hunit - }: - mkDerivation { - pname = "async"; - version = "2.1.1"; - src = "${ghcjsBoot}/boot/async"; - doCheck = false; - libraryHaskellDepends = [ base stm ]; - testHaskellDepends = [ - base HUnit test-framework test-framework-hunit - ]; - jailbreak = true; - homepage = "https://github.com/simonmar/async"; - description = "Run IO operations asynchronously and wait for their results"; - license = stdenv.lib.licenses.bsd3; - }) {}; - aeson = callPackage - ({ mkDerivation, attoparsec, base, base-compat, base-orphans - , base16-bytestring, bytestring, containers, deepseq, directory - , dlist, filepath, generic-deriving, ghc-prim, hashable - , hashable-time, HUnit, integer-logarithms, QuickCheck - , quickcheck-instances, scientific, stdenv, tagged - , template-haskell, test-framework, test-framework-hunit - , test-framework-quickcheck2, text, th-abstraction, time - , time-locale-compat, unordered-containers, uuid-types, vector - }: - mkDerivation { - pname = "aeson"; - version = "1.2.2.0"; - src = "${ghcjsBoot}/boot/aeson"; - doCheck = false; - libraryHaskellDepends = [ - attoparsec base base-compat bytestring containers deepseq dlist - ghc-prim hashable scientific tagged template-haskell text - th-abstraction time time-locale-compat unordered-containers - uuid-types vector - ]; - testHaskellDepends = [ - attoparsec base base-compat base-orphans base16-bytestring - bytestring containers directory dlist filepath generic-deriving - ghc-prim hashable hashable-time HUnit integer-logarithms QuickCheck - quickcheck-instances scientific tagged template-haskell - test-framework test-framework-hunit test-framework-quickcheck2 text - time time-locale-compat unordered-containers uuid-types vector - ]; - jailbreak = true; - homepage = "https://github.com/bos/aeson"; - description = "Fast JSON parsing and encoding"; - license = stdenv.lib.licenses.bsd3; - }) {}; - attoparsec = callPackage - ({ mkDerivation, array, base, bytestring, case-insensitive - , containers, criterion, deepseq, directory, filepath, ghc-prim - , http-types, parsec, QuickCheck, quickcheck-unicode, scientific - , stdenv, tasty, tasty-quickcheck, text, transformers - , unordered-containers, vector - }: - mkDerivation { - pname = "attoparsec"; - version = "0.13.1.0"; - src = "${ghcjsBoot}/boot/attoparsec"; - doCheck = false; - libraryHaskellDepends = [ - array base bytestring containers deepseq scientific text - transformers - ]; - testHaskellDepends = [ - array base bytestring deepseq QuickCheck quickcheck-unicode - scientific tasty tasty-quickcheck text transformers vector - ]; - benchmarkHaskellDepends = [ - array base bytestring case-insensitive containers criterion deepseq - directory filepath ghc-prim http-types parsec scientific text - transformers unordered-containers vector - ]; - jailbreak = true; - homepage = "https://github.com/bos/attoparsec"; - description = "Fast combinator parsing for bytestrings and text"; - license = stdenv.lib.licenses.bsd3; - }) {}; - base-compat = callPackage - ({ mkDerivation, base, hspec, QuickCheck, stdenv, unix }: - mkDerivation { - pname = "base-compat"; - version = "0.9.3"; - src = "${ghcjsBoot}/boot/base-compat"; - doCheck = false; - libraryHaskellDepends = [ base unix ]; - testHaskellDepends = [ base hspec QuickCheck ]; - jailbreak = true; - description = "A compatibility layer for base"; - license = stdenv.lib.licenses.mit; - }) {}; - bytestring-builder = callPackage - ({ mkDerivation, base, bytestring, deepseq, stdenv }: - mkDerivation { - pname = "bytestring-builder"; - version = "0.10.8.1.0"; - src = "${ghcjsBoot}/boot/bytestring-builder"; - doCheck = false; - libraryHaskellDepends = [ base bytestring deepseq ]; - jailbreak = true; - description = "The new bytestring builder, packaged outside of GHC"; - license = stdenv.lib.licenses.bsd3; - }) {}; - case-insensitive = callPackage - ({ mkDerivation, base, bytestring, criterion, deepseq, hashable - , HUnit, stdenv, test-framework, test-framework-hunit, text - }: - mkDerivation { - pname = "case-insensitive"; - version = "1.2.0.8"; - src = "${ghcjsBoot}/boot/case-insensitive"; - doCheck = false; - libraryHaskellDepends = [ base bytestring deepseq hashable text ]; - testHaskellDepends = [ - base bytestring HUnit test-framework test-framework-hunit text - ]; - benchmarkHaskellDepends = [ base bytestring criterion deepseq ]; - jailbreak = true; - homepage = "https://github.com/basvandijk/case-insensitive"; - description = "Case insensitive string comparison"; - license = stdenv.lib.licenses.bsd3; - }) {}; - dlist = callPackage - ({ mkDerivation, base, Cabal, deepseq, QuickCheck, stdenv }: - mkDerivation { - pname = "dlist"; - version = "0.8.0.2"; - src = "${ghcjsBoot}/boot/dlist"; - doCheck = false; - libraryHaskellDepends = [ base deepseq ]; - testHaskellDepends = [ base Cabal QuickCheck ]; - jailbreak = true; - homepage = "https://github.com/spl/dlist"; - description = "Difference lists"; - license = stdenv.lib.licenses.bsd3; - }) {}; - extensible-exceptions = callPackage - ({ mkDerivation, base, stdenv }: - mkDerivation { - pname = "extensible-exceptions"; - version = "0.1.1.4"; - src = "${ghcjsBoot}/boot/extensible-exceptions"; - doCheck = false; - libraryHaskellDepends = [ base ]; - jailbreak = true; - description = "Extensible exceptions"; - license = stdenv.lib.licenses.bsd3; - }) {}; - fail = callPackage - ({ mkDerivation, stdenv }: - mkDerivation { - pname = "fail"; - version = "4.9.0.0"; - src = "${ghcjsBoot}/boot/fail"; - jailbreak = true; - homepage = "https://prime.haskell.org/wiki/Libraries/Proposals/MonadFail"; - description = "Forward-compatible MonadFail class"; - license = stdenv.lib.licenses.bsd3; - }) {}; - hashable = callPackage - ({ mkDerivation, base, bytestring, criterion, ghc-prim, HUnit - , integer-gmp, QuickCheck, random, siphash, stdenv, test-framework - , test-framework-hunit, test-framework-quickcheck2, text, unix - }: - mkDerivation { - pname = "hashable"; - version = "1.2.4.0"; - src = "${ghcjsBoot}/boot/hashable"; - doCheck = false; - libraryHaskellDepends = [ - base bytestring ghc-prim integer-gmp text - ]; - testHaskellDepends = [ - base bytestring ghc-prim HUnit QuickCheck random test-framework - test-framework-hunit test-framework-quickcheck2 text unix - ]; - benchmarkHaskellDepends = [ - base bytestring criterion ghc-prim integer-gmp siphash text - ]; - jailbreak = true; - homepage = "http://github.com/tibbe/hashable"; - description = "A class for types that can be converted to a hash value"; - license = stdenv.lib.licenses.bsd3; - }) {}; - integer-logarithms = callPackage - ({ mkDerivation, array, base, ghc-prim, integer-gmp, QuickCheck - , smallcheck, stdenv, tasty, tasty-hunit, tasty-quickcheck - , tasty-smallcheck - }: - mkDerivation { - pname = "integer-logarithms"; - version = "1.0.2"; - src = "${ghcjsBoot}/boot/integer-logarithms"; - doCheck = false; - libraryHaskellDepends = [ array base ghc-prim integer-gmp ]; - testHaskellDepends = [ - base QuickCheck smallcheck tasty tasty-hunit tasty-quickcheck - tasty-smallcheck - ]; - jailbreak = true; - homepage = "https://github.com/phadej/integer-logarithms"; - description = "Integer logarithms"; - license = stdenv.lib.licenses.mit; - }) {}; - mtl = callPackage - ({ mkDerivation, base, stdenv, transformers }: - mkDerivation { - pname = "mtl"; - version = "2.2.1"; - src = "${ghcjsBoot}/boot/mtl"; - doCheck = false; - libraryHaskellDepends = [ base transformers ]; - jailbreak = true; - homepage = "http://github.com/ekmett/mtl"; - description = "Monad classes, using functional dependencies"; - license = stdenv.lib.licenses.bsd3; - }) {}; - nats = callPackage - ({ mkDerivation, stdenv }: - mkDerivation { - pname = "nats"; - version = "1.1.1"; - src = "${ghcjsBoot}/boot/nats"; - jailbreak = true; - homepage = "http://github.com/ekmett/nats/"; - description = "Natural numbers"; - license = stdenv.lib.licenses.bsd3; - }) {}; - old-time = callPackage - ({ mkDerivation, base, old-locale, stdenv }: - mkDerivation { - pname = "old-time"; - version = "1.1.0.3"; - src = "${ghcjsBoot}/boot/old-time"; - doCheck = false; - libraryHaskellDepends = [ base old-locale ]; - jailbreak = true; - description = "Time library"; - license = stdenv.lib.licenses.bsd3; - }) {}; - parallel = callPackage - ({ mkDerivation, array, base, containers, deepseq, stdenv }: - mkDerivation { - pname = "parallel"; - version = "3.2.1.0"; - src = "${ghcjsBoot}/boot/parallel"; - doCheck = false; - libraryHaskellDepends = [ array base containers deepseq ]; - jailbreak = true; - description = "Parallel programming library"; - license = stdenv.lib.licenses.bsd3; - }) {}; - random = callPackage - ({ mkDerivation, base, stdenv, time }: - mkDerivation { - pname = "random"; - version = "1.1"; - src = "${ghcjsBoot}/boot/random"; - doCheck = false; - libraryHaskellDepends = [ base time ]; - testHaskellDepends = [ base ]; - jailbreak = true; - description = "random number library"; - license = stdenv.lib.licenses.bsd3; - }) {}; - scientific = callPackage - ({ mkDerivation, base, binary, bytestring, containers, criterion - , deepseq, ghc-prim, hashable, integer-gmp, integer-logarithms - , QuickCheck, smallcheck, stdenv, tasty, tasty-ant-xml, tasty-hunit - , tasty-quickcheck, tasty-smallcheck, text, vector - }: - mkDerivation { - pname = "scientific"; - version = "0.3.4.10"; - src = "${ghcjsBoot}/boot/scientific"; - doCheck = false; - libraryHaskellDepends = [ - base binary bytestring containers deepseq ghc-prim hashable - integer-gmp integer-logarithms text vector - ]; - testHaskellDepends = [ - base binary bytestring QuickCheck smallcheck tasty tasty-ant-xml - tasty-hunit tasty-quickcheck tasty-smallcheck text - ]; - benchmarkHaskellDepends = [ base criterion ]; - jailbreak = true; - homepage = "https://github.com/basvandijk/scientific"; - description = "Numbers represented using scientific notation"; - license = stdenv.lib.licenses.bsd3; - }) {}; - semigroups = callPackage - ({ mkDerivation, base, stdenv }: - mkDerivation { - pname = "semigroups"; - version = "0.18.3"; - src = "${ghcjsBoot}/boot/semigroups"; - doCheck = false; - libraryHaskellDepends = [ base ]; - jailbreak = true; - homepage = "http://github.com/ekmett/semigroups/"; - description = "Anything that associates"; - license = stdenv.lib.licenses.bsd3; - }) {}; - stm = callPackage - ({ mkDerivation, array, base, stdenv }: - mkDerivation { - pname = "stm"; - version = "2.4.4.1"; - src = "${ghcjsBoot}/boot/stm"; - doCheck = false; - libraryHaskellDepends = [ array base ]; - jailbreak = true; - description = "Software Transactional Memory"; - license = stdenv.lib.licenses.bsd3; - }) {}; - syb = callPackage - ({ mkDerivation, base, containers, HUnit, mtl, stdenv }: - mkDerivation { - pname = "syb"; - version = "0.6"; - src = "${ghcjsBoot}/boot/syb"; - doCheck = false; - libraryHaskellDepends = [ base ]; - testHaskellDepends = [ base containers HUnit mtl ]; - jailbreak = true; - homepage = "http://www.cs.uu.nl/wiki/GenericProgramming/SYB"; - description = "Scrap Your Boilerplate"; - license = stdenv.lib.licenses.bsd3; - }) {}; - tagged = callPackage - ({ mkDerivation, base, deepseq, stdenv, template-haskell - , transformers, transformers-compat - }: - mkDerivation { - pname = "tagged"; - version = "0.8.5"; - src = "${ghcjsBoot}/boot/tagged"; - doCheck = false; - libraryHaskellDepends = [ - base deepseq template-haskell transformers transformers-compat - ]; - jailbreak = true; - homepage = "http://github.com/ekmett/tagged"; - description = "Haskell 98 phantom types to avoid unsafely passing dummy arguments"; - license = stdenv.lib.licenses.bsd3; - }) {}; - text = callPackage - ({ mkDerivation, array, base, binary, bytestring, deepseq, directory - , ghc-prim, HUnit, integer-gmp, QuickCheck, quickcheck-unicode - , random, stdenv, test-framework, test-framework-hunit - , test-framework-quickcheck2 - }: - mkDerivation { - pname = "text"; - version = "1.2.2.1"; - src = "${ghcjsBoot}/boot/text"; - doCheck = false; - libraryHaskellDepends = [ - array base binary bytestring deepseq ghc-prim integer-gmp - ]; - testHaskellDepends = [ - array base binary bytestring deepseq directory ghc-prim HUnit - integer-gmp QuickCheck quickcheck-unicode random test-framework - test-framework-hunit test-framework-quickcheck2 - ]; - jailbreak = true; - homepage = "https://github.com/bos/text"; - description = "An efficient packed Unicode text type"; - license = stdenv.lib.licenses.bsd3; - }) {}; - th-abstraction = callPackage - ({ mkDerivation, base, containers, ghc-prim, stdenv - , template-haskell - }: - mkDerivation { - pname = "th-abstraction"; - version = "0.2.6.0"; - src = "${ghcjsBoot}/boot/th-abstraction"; - doCheck = false; - libraryHaskellDepends = [ - base containers ghc-prim template-haskell - ]; - testHaskellDepends = [ base containers template-haskell ]; - jailbreak = true; - homepage = "https://github.com/glguy/th-abstraction"; - description = "Nicer interface for reified information about data types"; - license = stdenv.lib.licenses.isc; - }) {}; - time-locale-compat = callPackage - ({ mkDerivation, base, old-locale, stdenv, time }: - mkDerivation { - pname = "time-locale-compat"; - version = "0.1.1.3"; - src = "${ghcjsBoot}/boot/time-locale-compat"; - doCheck = false; - libraryHaskellDepends = [ base old-locale time ]; - jailbreak = true; - homepage = "https://github.com/khibino/haskell-time-locale-compat"; - description = "Compatibility of TimeLocale between old-locale and time-1.5"; - license = stdenv.lib.licenses.bsd3; - }) {}; - transformers-compat = callPackage - ({ mkDerivation, base, ghc-prim, stdenv, transformers }: - mkDerivation { - pname = "transformers-compat"; - version = "0.5.1.4"; - src = "${ghcjsBoot}/boot/transformers-compat"; - doCheck = false; - libraryHaskellDepends = [ base ghc-prim transformers ]; - jailbreak = true; - homepage = "http://github.com/ekmett/transformers-compat/"; - description = "A small compatibility shim exposing the new types from transformers 0.3 and 0.4 to older Haskell platforms."; - license = stdenv.lib.licenses.bsd3; - }) {}; - unordered-containers = callPackage - ({ mkDerivation, base, bytestring, ChasingBottoms, containers - , criterion, deepseq, deepseq-generics, hashable, hashmap, HUnit - , mtl, QuickCheck, random, stdenv, test-framework - , test-framework-hunit, test-framework-quickcheck2 - }: - mkDerivation { - pname = "unordered-containers"; - version = "0.2.7.2"; - src = "${ghcjsBoot}/boot/unordered-containers"; - doCheck = false; - libraryHaskellDepends = [ base deepseq hashable ]; - testHaskellDepends = [ - base ChasingBottoms containers hashable HUnit QuickCheck - test-framework test-framework-hunit test-framework-quickcheck2 - ]; - benchmarkHaskellDepends = [ - base bytestring containers criterion deepseq deepseq-generics - hashable hashmap mtl random - ]; - jailbreak = true; - homepage = "https://github.com/tibbe/unordered-containers"; - description = "Efficient hashing-based container types"; - license = stdenv.lib.licenses.bsd3; - }) {}; - uuid-types = callPackage - ({ mkDerivation, base, binary, bytestring, containers, criterion - , deepseq, hashable, HUnit, QuickCheck, random, stdenv, tasty - , tasty-hunit, tasty-quickcheck, text, unordered-containers - }: - mkDerivation { - pname = "uuid-types"; - version = "1.0.3"; - src = "${ghcjsBoot}/boot/uuid/uuid-types"; - doCheck = false; - libraryHaskellDepends = [ - base binary bytestring deepseq hashable random text - ]; - testHaskellDepends = [ - base bytestring HUnit QuickCheck tasty tasty-hunit tasty-quickcheck - ]; - benchmarkHaskellDepends = [ - base bytestring containers criterion deepseq random - unordered-containers - ]; - jailbreak = true; - homepage = "https://github.com/hvr/uuid"; - description = "Type definitions for Universally Unique Identifiers"; - license = stdenv.lib.licenses.bsd3; - }) {}; - vector = callPackage - ({ mkDerivation, base, deepseq, ghc-prim, primitive, QuickCheck - , random, stdenv, template-haskell, test-framework - , test-framework-quickcheck2, transformers - }: - mkDerivation { - pname = "vector"; - version = "0.11.0.0"; - src = "${ghcjsBoot}/boot/vector"; - doCheck = false; - libraryHaskellDepends = [ base deepseq ghc-prim primitive ]; - testHaskellDepends = [ - base QuickCheck random template-haskell test-framework - test-framework-quickcheck2 transformers - ]; - jailbreak = true; - homepage = "https://github.com/haskell/vector"; - description = "Efficient Arrays"; - license = stdenv.lib.licenses.bsd3; - }) {}; - ghcjs-base = callPackage - ({ mkDerivation, aeson, array, attoparsec, base, bytestring - , containers, deepseq, directory, dlist, ghc-prim, ghcjs-prim - , hashable, HUnit, integer-gmp, primitive, QuickCheck - , quickcheck-unicode, random, scientific, stdenv, test-framework - , test-framework-hunit, test-framework-quickcheck2, text, time - , transformers, unordered-containers, vector - }: - mkDerivation { - pname = "ghcjs-base"; - version = "0.2.0.0"; - src = "${ghcjsBoot}/ghcjs/ghcjs-base"; - doCheck = false; - libraryHaskellDepends = [ - aeson attoparsec base bytestring containers deepseq dlist ghc-prim - ghcjs-prim hashable integer-gmp primitive scientific text time - transformers unordered-containers vector - ]; - testHaskellDepends = [ - array base bytestring deepseq directory ghc-prim ghcjs-prim HUnit - primitive QuickCheck quickcheck-unicode random test-framework - test-framework-hunit test-framework-quickcheck2 text - ]; - jailbreak = true; - homepage = "http://github.com/ghcjs/ghcjs-base"; - description = "base library for GHCJS"; - license = stdenv.lib.licenses.mit; - }) {}; - Cabal = callPackage - ({ mkDerivation, array, base, binary, bytestring, containers - , deepseq, directory, exceptions, filepath, old-time, pretty - , process, QuickCheck, regex-posix, stdenv, tagged, tasty - , tasty-hunit, tasty-quickcheck, time, transformers, unix - }: - mkDerivation { - pname = "Cabal"; - version = "1.24.0.0"; - src = "${ghcjsBoot}/boot/cabal/Cabal"; - doCheck = false; - libraryHaskellDepends = [ - array base binary bytestring containers deepseq directory filepath - pretty process time unix - ]; - testHaskellDepends = [ - base bytestring containers directory exceptions filepath old-time - pretty process QuickCheck regex-posix tagged tasty tasty-hunit - tasty-quickcheck transformers unix - ]; - jailbreak = true; - homepage = "http://www.haskell.org/cabal/"; - description = "A framework for packaging Haskell software"; - license = stdenv.lib.licenses.bsd3; - }) {}; -} diff --git a/pkgs/development/compilers/go/1.11.nix b/pkgs/development/compilers/go/1.11.nix index f58e0801030e7360d59697934a76cb712756670a..7ae372140963764d94b8ef67597f5de8a3762dfd 100644 --- a/pkgs/development/compilers/go/1.11.nix +++ b/pkgs/development/compilers/go/1.11.nix @@ -131,14 +131,17 @@ stdenv.mkDerivation rec { substituteInPlace "src/cmd/link/internal/ld/lib.go" --replace dsymutil ${llvm}/bin/llvm-dsymutil ''; - GOOS = if stdenv.isDarwin then "darwin" else "linux"; - GOARCH = if stdenv.isDarwin then "amd64" - else if stdenv.targetPlatform.isi686 then "386" - else if stdenv.targetPlatform.isx86_64 then "amd64" - else if stdenv.targetPlatform.isAarch32 then "arm" - else if stdenv.targetPlatform.isAarch64 then "arm64" - else throw "Unsupported system"; - GOARM = toString (stdenv.lib.intersectLists [(stdenv.targetPlatform.parsed.cpu.version or "")] ["5" "6" "7"]); + GOOS = stdenv.hostPlatform.parsed.kernel.name; + GOARCH = { + "i686" = "386"; + "x86_64" = "amd64"; + "aarch64" = "arm64"; + "arm" = "arm"; + "armv5tel" = "arm"; + "armv6l" = "arm"; + "armv7l" = "arm"; + }.${stdenv.hostPlatform.parsed.cpu.name} or (throw "Unsupported system"); + GOARM = toString (stdenv.lib.intersectLists [(stdenv.hostPlatform.parsed.cpu.version or "")] ["5" "6" "7"]); GO386 = 387; # from Arch: don't assume sse2 on i686 CGO_ENABLED = 1; GOROOT_BOOTSTRAP = "${goBootstrap}/share/go"; diff --git a/pkgs/development/compilers/graalvm/default.nix b/pkgs/development/compilers/graalvm/default.nix index 7721ce06a561351edc34792377b4eef521165012..a35143b434968367ad60a58e1c63c10a6b44e877 100644 --- a/pkgs/development/compilers/graalvm/default.nix +++ b/pkgs/development/compilers/graalvm/default.nix @@ -50,6 +50,9 @@ let rec { sha1 = "280c265b789e041c02e5c97815793dfc283fb1e6"; name = "LIBFFI_${sha1}/libffi.tar.gz"; url = https://lafo.ssw.uni-linz.ac.at/pub/graal-external-deps/libffi-3.2.1.tar.gz; } rec { sha1 = "8819cea8bfe22c9c63f55465e296b3855ea41786"; name = "TruffleJSON_${sha1}/trufflejson.jar"; url = https://lafo.ssw.uni-linz.ac.at/pub/graal-external-deps/trufflejson-20180130.jar; } rec { sha1 = "9712a8124c40298015f04a74f61b3d81a51513af"; name = "CHECKSTYLE_8.8_${sha1}/checkstyle-8.8.jar"; url = https://lafo.ssw.uni-linz.ac.at/pub/graal-external-deps/checkstyle-8.8-all.jar; } + rec { sha1 = "a828a4f32caf9ac0b74f2548f87310959558c526"; name = "VISUALVM_COMMON_${sha1}/visualvm-common.tar.gz"; url = https://lafo.ssw.uni-linz.ac.at/pub/graal-external-deps/visualvm-612.tar.gz; } + rec { sha1 = "7ac829f0c9a37f5cc39afd2265588a365480720d"; name = "VISUALVM_PLATFORM_SPECIFIC_${sha1}/visualvm-platform-specific.tar.gz"; url = https://lafo.ssw.uni-linz.ac.at/pub/graal-external-deps/visualvm-612-linux-amd64.tar.gz; } + rec { sha1 = "e6e60889b7211a80b21052a249bd7e0f88f79fee"; name = "Java-WebSocket_${sha1}/java-websocket.jar"; url = mirror://maven/org/java-websocket/Java-WebSocket/1.3.9/Java-WebSocket-1.3.9.jar; } ]; findbugs = fetchzip { @@ -61,13 +64,13 @@ let in rec { mx = stdenv.mkDerivation rec { - version = "5.176.4"; + version = "5.192.0"; name = "mx"; src = fetchFromGitHub { owner = "graalvm"; repo = "mx"; rev = version; - sha256 = "0xmx4hpnd6m9hk49lgwnvwd0q11s2m4d8axwq7zzc8wm10d692xw"; + sha256 = "04gdf1gzlc8a6li8lcnrs2j9zicj11fs1vqqf7cmhb4pm2h72hml"; }; nativeBuildInputs = [ makeWrapper ]; buildPhase = '' @@ -79,6 +82,11 @@ in rec { 'def download(path, urls, verbose=False, abortOnError=True, verifyOnly=False): print("FAKE download(path={} urls={} verbose={} abortOnError={} verifyOnly={})".format(path, urls, verbose, abortOnError, verifyOnly)) return True' + + # avoid crash with 'ValueError: ZIP does not support timestamps before 1980' + substituteInPlace mx.py --replace \ + 'zipfile.ZipInfo(arcname, time.localtime(os.path.getmtime(join(root, f)))[:6])' \ + 'zipfile.ZipInfo(arcname, time.strptime ("1 Jan 1980", "%d %b %Y" )[:6])' ''; installPhase = '' mkdir -p $out/bin @@ -97,9 +105,9 @@ in rec { # copy of pkgs.oraclejvm8 with JVMCI interface (TODO: it should work with pkgs.openjdk8 too) jvmci8 = stdenv.mkDerivation rec { - version = "0.45"; + version = "0.49"; name = let - n = "jvmci8u171-${version}"; + n = "jvmci${/*"8u191"*/ lib.removePrefix "oraclejdk-" oraclejdk8.name}-${version}"; in if (lib.stringLength n) == (lib.stringLength oraclejdk8.name) then n else @@ -108,7 +116,7 @@ in rec { owner = "graalvm"; repo = "graal-jvmci-8"; rev = "jvmci-${version}"; - sha256 = "1nppk9dpamisiadss1iy82i3rf6igndbf1vax85w9lz310kh0d12"; + sha256 = "1zgin0w1qa7wmfhcisx470fhnmddfxxp5nyyix31yaa7dznql82k"; }; buildInputs = [ mx mercurial ]; postUnpack = '' @@ -146,7 +154,7 @@ in rec { }; graalvm8 = stdenv.mkDerivation rec { - version = "1.0.0-rc3"; + version = "1.0.0-rc8"; name = let n = "graal-${version}"; in if (lib.stringLength n) == (lib.stringLength jvmci8.name) then @@ -157,7 +165,7 @@ in rec { owner = "oracle"; repo = "graal"; rev = "vm-${version}"; - sha256 = "1hcs4m6ailapgi3bikav1i517vqn5pn595cyqqjfvlnkjwihbnc3"; + sha256 = "1fada4awrr8bhw294xdiq4bagvgrlcr44mw6338gaal0ky3vkm0p"; }; buildInputs = [ mx zlib mercurial jvmci8 ]; postUnpack = '' @@ -170,6 +178,17 @@ in rec { hg checkout ${lib.escapeShellArg src.rev} ) ''; + postPatch = '' + substituteInPlace substratevm/src/com.oracle.svm.core.posix/src/com/oracle/svm/core/posix/headers/PosixDirectives.java \ + --replace '' '<${zlib.dev}/include/zlib.h>' + substituteInPlace substratevm/src/com.oracle.svm.hosted/src/com/oracle/svm/hosted/image/CCLinkerInvocation.java \ + --replace 'cmd.add("-v");' 'cmd.add("-v"); cmd.add("-L${zlib}/lib");' + substituteInPlace substratevm/src/com.oracle.svm.hosted/src/com/oracle/svm/hosted/c/codegen/CCompilerInvoker.java \ + --replace 'command.add(Platform.includedIn(Platform.WINDOWS.class) ? "CL" : "gcc");' \ + 'command.add(Platform.includedIn(Platform.WINDOWS.class) ? "CL" : "${stdenv.cc}/bin/gcc");' + substituteInPlace substratevm/src/com.oracle.svm.hosted/src/com/oracle/svm/hosted/image/CCLinkerInvocation.java \ + --replace 'protected String compilerCommand = "cc";' 'protected String compilerCommand = "${stdenv.cc}/bin/cc";' + ''; buildPhase = '' # make a copy of jvmci8 cp -dpR ${jvmci8} $out @@ -178,13 +197,14 @@ in rec { export MX_ALT_OUTPUT_ROOT=$NIX_BUILD_TOP/mxbuild export MX_CACHE_DIR=${makeMxCache graal-mxcache} + ( cd substratevm mkdir -p clibraries mx --java-home $out build # bootstrap native-image (that was removed from mx build in https://github.com/oracle/graal/commit/140d7a7edf54ec5872a8ff45869cd1ae499efde4) - mx --java-home $out native-image -cp $MX_ALT_OUTPUT_ROOT/substratevm/dists/svm-driver.jar com.oracle.svm.driver.NativeImage + mx --java-home $out native-image -cp $MX_ALT_OUTPUT_ROOT/substratevm/dists/jdk1.8/svm-driver.jar com.oracle.svm.driver.NativeImage ) ( cd tools mx --java-home $out build @@ -195,17 +215,17 @@ in rec { mkdir -p $out/jre/tools/{profiler,chromeinspector,truffle/builder} $out/jre/lib/{graal,include,truffle/include} cp -vpLR substratevm/svmbuild/native-image-root/lib/* $out/jre/lib/ || true # ignore "same file" error when dereferencing symlinks cp -vp $MX_ALT_OUTPUT_ROOT/truffle/linux-amd64/truffle-nfi-native/bin/* $out/jre/lib/amd64/ - cp -vp $MX_ALT_OUTPUT_ROOT/compiler/dists/graal-*processor*.jar $out/jre/lib/graal/ + cp -vp $MX_ALT_OUTPUT_ROOT/compiler/dists/jdk1.8/graal-*processor*.jar $out/jre/lib/graal/ cp -vp $MX_ALT_OUTPUT_ROOT/truffle/linux-amd64/truffle-nfi-native/include/* $out/jre/lib/include/ - cp -vp $MX_ALT_OUTPUT_ROOT/compiler/dists/graal-management.jar $out/jre/lib/jvmci/ + cp -vp $MX_ALT_OUTPUT_ROOT/compiler/dists/jdk1.8/graal-management.jar $out/jre/lib/jvmci/ cp -vdpR $out/jre/lib/svm/clibraries $out/jre/lib/svm/builder/ - cp -vpR $MX_ALT_OUTPUT_ROOT/truffle/dists/* $out/jre/lib/truffle/ + cp -vpR $MX_ALT_OUTPUT_ROOT/truffle/dists/jdk1.8/* $out/jre/lib/truffle/ cp -vp $MX_ALT_OUTPUT_ROOT/truffle/linux-amd64/truffle-nfi-native/include/* $out/jre/lib/truffle/include/ cp -vpLR substratevm/svmbuild/native-image-root/tools/* $out/jre/tools/ cp -vpR $MX_ALT_OUTPUT_ROOT/tools/dists/chromeinspector* $out/jre/tools/chromeinspector/ cp -vpR $MX_ALT_OUTPUT_ROOT/tools/dists/truffle-profiler* $out/jre/tools/profiler/ cp -vpR $MX_ALT_OUTPUT_ROOT/truffle/linux-amd64/truffle-nfi-native/* $out/jre/tools/truffle/ - cp -vp $MX_ALT_OUTPUT_ROOT/truffle/dists/truffle-nfi.jar $out/jre/tools/truffle/builder/ + cp -vp $MX_ALT_OUTPUT_ROOT/truffle/dists/jdk1.8/truffle-nfi.jar $out/jre/tools/truffle/builder/ echo "name=GraalVM ${version}" > $out/jre/lib/amd64/server/vm.properties echo -n "graal" > $out/jre/lib/jvmci/compiler-name diff --git a/pkgs/development/compilers/kotlin/default.nix b/pkgs/development/compilers/kotlin/default.nix index 7b88efd1e616e2192432f3c1716852045092d4b0..c427ec75cb37d140d043b3382d3acdf70cb679b6 100644 --- a/pkgs/development/compilers/kotlin/default.nix +++ b/pkgs/development/compilers/kotlin/default.nix @@ -1,14 +1,14 @@ { stdenv, fetchurl, makeWrapper, jre, unzip }: let - version = "1.2.71"; + version = "1.3.0"; in stdenv.mkDerivation rec { inherit version; name = "kotlin-${version}"; src = fetchurl { url = "https://github.com/JetBrains/kotlin/releases/download/v${version}/kotlin-compiler-${version}.zip"; - sha256 = "0yzanv2jkjx3vfixzvjsihfi00khs7zr47y01cil8bylzvyr50p4"; + sha256 = "14i5qmni1dzfamab6y659b5nvgp99m1abx71i83zcbfi9nw1r1gz"; }; propagatedBuildInputs = [ jre ] ; diff --git a/pkgs/development/compilers/mentor/default.nix b/pkgs/development/compilers/mentor/default.nix deleted file mode 100644 index 4f09df7f2ea0e8633cc88a3168c2dc509fb03d77..0000000000000000000000000000000000000000 --- a/pkgs/development/compilers/mentor/default.nix +++ /dev/null @@ -1,80 +0,0 @@ -# Sourcery CodeBench Lite toolchain(s) (GCC) from Mentor Graphics - -{ stdenv, fetchurl, patchelf, ncurses }: - -let - - buildToolchain = - { name, src, description }: - - stdenv.mkDerivation rec { - inherit name src; - - nativeBuildInputs = [ patchelf ]; - - buildCommand = '' - # Unpack tarball - mkdir -p "$out" - tar --strip-components=1 -xjf "$src" -C "$out" - - # Patch binaries - interpreter="$(cat "$NIX_CC"/nix-support/dynamic-linker)" - for file in "$out"/bin/* "$out"/libexec/gcc/*/*/* "$out"/*/bin/*; do - # Skip non-executable files - case "$file" in - *README.txt) echo "skipping $file"; continue;; - *liblto_plugin.so*) echo "skipping $file"; continue;; - esac - - # Skip directories - test -d "$file" && continue - - echo "patchelf'ing $file" - patchelf --set-interpreter "$interpreter" "$file" - - # GDB needs ncurses - case "$file" in - *gdb) patchelf --set-rpath "${ncurses.out}/lib" "$file";; - esac - done - - # Manpages - mkdir -p "$out/share/man" - ln -s "$out"/share/doc/*/man/man1 "$out/share/man/man1" - ln -s "$out"/share/doc/*/man/man7 "$out/share/man/man7" - ''; - - meta = with stdenv.lib; { - inherit description; - homepage = https://www.mentor.com/embedded-software/sourcery-tools/sourcery-codebench/editions/lite-edition/; - license = licenses.gpl3; - platforms = platforms.linux; - maintainers = [ maintainers.bjornfor ]; - }; - }; - -in - -{ - - armLinuxGnuEabi = let version = "2013.05-24"; in buildToolchain rec { - name = "sourcery-codebench-lite-arm-linux-gnueabi-${version}"; - description = "Sourcery CodeBench Lite toolchain (GCC) for ARM GNU/Linux, from Mentor Graphics"; - src = fetchurl { - url = "http://sourcery.mentor.com/public/gnu_toolchain/arm-none-linux-gnueabi/arm-${version}-arm-none-linux-gnueabi-i686-pc-linux-gnu.tar.bz2"; - sha256 = "1xb075ia61c59cya2jl8zp4fvqpfnwkkc5330shvgdlg9981qprr"; - }; - }; - - armEabi = let version = "2013.05-23"; in buildToolchain rec { - name = "sourcery-codebench-lite-arm-eabi-${version}"; - description = "Sourcery CodeBench Lite toolchain (GCC) for ARM EABI, from Mentor Graphics"; - src = fetchurl { - url = "http://sourcery.mentor.com/public/gnu_toolchain/arm-none-eabi/arm-${version}-arm-none-eabi-i686-pc-linux-gnu.tar.bz2"; - sha256 = "0nbvdwj3kcv9scx808gniqp0ncdiy2i7afmdvribgkz1lsfin923"; - }; - }; - - # TODO: Sourcery CodeBench is also available for MIPS, Power, SuperH, - # ColdFire (and more). -} diff --git a/pkgs/development/compilers/microscheme/default.nix b/pkgs/development/compilers/microscheme/default.nix index cfee1b0d86391b0af12a616128ce69a67e52c856..f15a7624327795fc19882c66d9bb4f6deab1ebc6 100644 --- a/pkgs/development/compilers/microscheme/default.nix +++ b/pkgs/development/compilers/microscheme/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchzip, vim, avrdude, avrbinutils, avrgcc, avrlibc, makeWrapper }: +{ stdenv, fetchzip, vim, makeWrapper }: stdenv.mkDerivation rec { name = "microscheme-${version}"; @@ -10,15 +10,10 @@ stdenv.mkDerivation rec { sha256 = "1r3ng4pw1s9yy1h5rafra1rq19d3vmb5pzbpcz1913wz22qdd976"; }; - # Just a guess - propagatedBuildInputs = [ avrlibc ]; buildInputs = [ makeWrapper vim ]; installPhase = '' make install PREFIX=$out - - wrapProgram $out/bin/microscheme \ - --prefix PATH : "${stdenv.lib.makeBinPath [ avrdude avrgcc avrbinutils ]}" ''; meta = with stdenv.lib; { diff --git a/pkgs/development/compilers/nim/default.nix b/pkgs/development/compilers/nim/default.nix index a4b706d35aa527ac4a9e88f5074d73c51cd1a169..ae36041b33ebedcf1c3ff95fa381a8ff6a0b8fa6 100644 --- a/pkgs/development/compilers/nim/default.nix +++ b/pkgs/development/compilers/nim/default.nix @@ -1,14 +1,14 @@ # based on https://github.com/nim-lang/Nim/blob/v0.18.0/.travis.yml -{ stdenv, lib, fetchurl, makeWrapper, nodejs-slim-8_x, openssl, pcre, readline, sqlite, boehmgc, sfml, tzdata, coreutils }: +{ stdenv, lib, fetchurl, makeWrapper, nodejs-slim-10_x, openssl, pcre, readline, boehmgc, sfml, tzdata, coreutils }: stdenv.mkDerivation rec { name = "nim-${version}"; - version = "0.18.0"; + version = "0.19.0"; src = fetchurl { url = "https://nim-lang.org/download/${name}.tar.xz"; - sha256 = "45c74adb35f08dfa9add1112ae17330e5d902ebb4a36e7046caee8b79e6f3bd0"; + sha256 = "0biwvw1gividp5lkf0daq1wp9v6ms4xy6dkf5zj0sn9w4m3n76d1"; }; doCheck = !stdenv.isDarwin; @@ -19,7 +19,6 @@ stdenv.mkDerivation rec { "-lcrypto" "-lpcre" "-lreadline" - "-lsqlite3" "-lgc" ]; @@ -28,12 +27,21 @@ stdenv.mkDerivation rec { # used for bootstrapping, but koch insists on moving the nim compiler around # as part of building it, so it cannot be read-only + nativeBuildInputs = [ + makeWrapper nodejs-slim-10_x tzdata coreutils + ]; + buildInputs = [ - makeWrapper nodejs-slim-8_x tzdata coreutils - openssl pcre readline sqlite boehmgc sfml + openssl pcre readline boehmgc sfml ]; + phases = [ "unpackPhase" "patchPhase" "buildPhase" "installPhase" "checkPhase" ]; + buildPhase = '' + # use $CC to trigger the linker since calling ld in build.sh causes an error + LD=$CC + # build.sh wants to write to $HOME/.cache + HOME=$TMPDIR sh build.sh ./bin/nim c koch ./koch boot -d:release \ @@ -51,33 +59,24 @@ stdenv.mkDerivation rec { --suffix PATH : ${lib.makeBinPath [ stdenv.cc ]} ''; - postPatch = + patchPhase = let disableTest = ''sed -i '1i discard \"\"\"\n disabled: true\n\"\"\"\n\n' ''; + disableStdLibTest = ''sed -i -e '/^when isMainModule/,/^END$/{s/^/#/}' ''; disableCompile = ''sed -i -e 's/^/#/' ''; in '' substituteInPlace ./tests/async/tioselectors.nim --replace "/bin/sleep" "sleep" substituteInPlace ./tests/osproc/tworkingdir.nim --replace "/usr/bin" "${coreutils}/bin" substituteInPlace ./tests/stdlib/ttimes.nim --replace "/usr/share/zoneinfo" "${tzdata}/share/zoneinfo" - # disable supposedly broken tests - ${disableTest} ./tests/errmsgs/tproper_stacktrace2.nim - ${disableTest} ./tests/vm/trgba.nim - # disable tests requiring network access (not available in the build container) ${disableTest} ./tests/stdlib/thttpclient.nim - ${disableTest} ./tests/cpp/tasync_cpp.nim - ${disableTest} ./tests/niminaction/Chapter7/Tweeter/src/tweeter.nim - - # disable tests requiring un-downloadable dependencies (using nimble, which isn't available in the fetch phase) - ${disableCompile} ./tests/manyloc/keineschweine/keineschweine.nim - ${disableTest} ./tests/manyloc/keineschweine/keineschweine.nim - ${disableCompile} ./tests/manyloc/nake/nakefile.nim - ${disableTest} ./tests/manyloc/nake/nakefile.nim - ${disableCompile} ./tests/manyloc/named_argument_bug/main.nim - ${disableTest} ./tests/manyloc/named_argument_bug/main.nim + '' + lib.optionalString stdenv.isAarch64 '' + # disable test supposedly broken on aarch64 + ${disableStdLibTest} ./lib/pure/stats.nim ''; checkPhase = '' + PATH=$PATH:$out/bin ./koch tests ''; diff --git a/pkgs/development/compilers/ocaml/4.07.nix b/pkgs/development/compilers/ocaml/4.07.nix index 19b9626f4e8f55f2c348418764388d18ed371099..c1952f30ba6889d50b91fef1d6f36f659e3dace9 100644 --- a/pkgs/development/compilers/ocaml/4.07.nix +++ b/pkgs/development/compilers/ocaml/4.07.nix @@ -1,8 +1,8 @@ import ./generic.nix { major_version = "4"; minor_version = "07"; - patch_version = "0"; - sha256 = "03wzkzv6w4rdiiva20g5amz0n4x75swpjl8d80468p6zm8hgfnzl"; + patch_version = "1"; + sha256 = "1f07hgj5k45cylj1q3k5mk8yi02cwzx849b1fwnwia8xlcfqpr6z"; # If the executable is stripped it does not work dontStrip = true; diff --git a/pkgs/development/compilers/ocaml/ber-metaocaml-104.nix b/pkgs/development/compilers/ocaml/ber-metaocaml.nix similarity index 85% rename from pkgs/development/compilers/ocaml/ber-metaocaml-104.nix rename to pkgs/development/compilers/ocaml/ber-metaocaml.nix index e6c68894036858b4ab4db2e2d1e05496e77007c1..2eeb6ad8408434d40b37a22048f899479d56b2f2 100644 --- a/pkgs/development/compilers/ocaml/ber-metaocaml-104.nix +++ b/pkgs/development/compilers/ocaml/ber-metaocaml.nix @@ -8,16 +8,16 @@ in stdenv.mkDerivation rec { name = "ber-metaocaml-${version}"; - version = "104"; + version = "107"; src = fetchurl { - url = "https://caml.inria.fr/pub/distrib/ocaml-4.04/ocaml-4.04.0.tar.gz"; - sha256 = "1pi2hdm9lxhn45qvfqfss1hpa4jijm14qgmrgajsadxqdiplhqyb"; + url = "https://caml.inria.fr/pub/distrib/ocaml-4.07/ocaml-4.07.1.tar.gz"; + sha256 = "1x4sln131mcspisr22qc304590rvg720rbl7g2i4xiymgvhkpm1a"; }; metaocaml = fetchurl { - url = "http://okmij.org/ftp/ML/ber-metaocaml-104.tar.gz"; - sha256 = "1gmwlxairxqcmqa2r6kbf8b4dxc7pfhfbh48g1s14d3z20rj8nib"; + url = "http://okmij.org/ftp/ML/ber-metaocaml-107.tar.gz"; + sha256 = "0xy6n0yj1f53pk612zfmn49pn04bd75qa40xgmr0w0lzx6dqsfmm"; }; # Needed to avoid a SIGBUS on the final executable on mips diff --git a/pkgs/development/compilers/openjdk/10.nix b/pkgs/development/compilers/openjdk/11.nix similarity index 67% rename from pkgs/development/compilers/openjdk/10.nix rename to pkgs/development/compilers/openjdk/11.nix index 1c125fac62f1af8c854f1c21d2c4493fca6a472b..e2d89f3ef728782be0e65d3ac59cf896d40f1185 100644 --- a/pkgs/development/compilers/openjdk/10.nix +++ b/pkgs/development/compilers/openjdk/11.nix @@ -1,4 +1,4 @@ -{ stdenv, lib, fetchurl, bash, cpio, pkgconfig, file, which, unzip, zip, cups, freetype +{ stdenv, lib, fetchurl, bash, cpio, autoconf, pkgconfig, file, which, unzip, zip, cups, freetype , alsaLib, bootjdk, perl, liberation_ttf, fontconfig, zlib, lndir , libX11, libICE, libXrender, libXext, libXt, libXtst, libXi, libXinerama, libXcursor, libXrandr , libjpeg, giflib @@ -10,31 +10,30 @@ let /** - * The JRE libraries are in directories that depend on the CPU. + * The JDK libraries are in directories that depend on the CPU. */ architecture = if stdenv.hostPlatform.system == "i686-linux" then "i386" else "amd64"; - update = "10.0.2"; + major = "11"; + update = ".0.1"; build = "13"; - repover = "jdk-${update}+${build}"; + repover = "jdk-${major}${update}+${build}"; paxflags = if stdenv.isi686 then "msp" else "m"; - openjdk10 = stdenv.mkDerivation { - name = "openjdk-${update}-b${build}"; + openjdk = stdenv.mkDerivation { + name = "openjdk-${major}${update}-b${build}"; src = fetchurl { - url = "http://hg.openjdk.java.net/jdk-updates/jdk10u/archive/${repover}.tar.gz"; - sha256 = "0y7hyzgvn6z8gyp3h9xvxwj6zda899y6i629jn6yxqzj96q56jpk"; + url = "http://hg.openjdk.java.net/jdk-updates/jdk${major}u/archive/${repover}.tar.gz"; + sha256 = "1ri3fv67rvs9xxhc3ynklbprhxbdsgpwafbw6wqj950xy5crgysm"; }; - outputs = [ "out" "jre" ]; - nativeBuildInputs = [ pkgconfig ]; buildInputs = [ - cpio file which unzip zip perl bootjdk zlib cups freetype alsaLib + autoconf cpio file which unzip zip perl bootjdk zlib cups freetype alsaLib libjpeg giflib libX11 libICE libXext libXrender libXtst libXt libXtst libXi libXinerama libXcursor libXrandr lndir fontconfig ] ++ lib.optionals (!minimal && enableGnome2) [ @@ -55,12 +54,11 @@ let configureFlagsArray=( "--with-boot-jdk=${bootjdk.home}" - "--with-update-version=${update}" + "--with-update-version=${major}${update}" "--with-build-number=${build}" "--with-milestone=fcs" "--enable-unlimited-crypto" "--disable-debug-symbols" - "--disable-freetype-bundling" "--with-zlib=system" "--with-giflib=system" "--with-stdc++lib=dynamic" @@ -86,7 +84,7 @@ let buildFlags = [ "all" ]; installPhase = '' - mkdir -p $out/lib/openjdk $out/share $jre/lib/openjdk + mkdir -p $out/lib/openjdk $out/share cp -av build/*/images/jdk/* $out/lib/openjdk @@ -101,57 +99,29 @@ let # jni.h expects jni_md.h to be in the header search path. ln -s $out/include/linux/*_md.h $out/include/ - # Copy the JRE to a separate output and setup fallback fonts - cp -av build/*/images/jre $jre/lib/openjdk/ - mkdir $out/lib/openjdk/jre - ${lib.optionalString (!minimal) '' - mkdir -p $jre/lib/openjdk/jre/lib/fonts/fallback - lndir ${liberation_ttf}/share/fonts/truetype $jre/lib/openjdk/jre/lib/fonts/fallback - ''} - # Remove crap from the installation. rm -rf $out/lib/openjdk/demo ${lib.optionalString minimal '' - for d in $out/lib/openjdk/lib $jre/lib/openjdk/jre/lib; do - rm ''${d}/{libjsound,libjsoundalsa,libfontmanager}.so - done + rm $out/lib/openjdk/lib/{libjsound,libfontmanager}.so ''} - lndir $jre/lib/openjdk/jre $out/lib/openjdk/jre - # Set PaX markings - exes=$(file $out/lib/openjdk/bin/* $jre/lib/openjdk/jre/bin/* 2> /dev/null | grep -E 'ELF.*(executable|shared object)' | sed -e 's/: .*$//') + exes=$(file $out/lib/openjdk/bin/* 2> /dev/null | grep -E 'ELF.*(executable|shared object)' | sed -e 's/: .*$//') echo "to mark: *$exes*" for file in $exes; do echo "marking *$file*" paxmark ${paxflags} "$file" done - # Remove duplicate binaries. - for i in $(cd $out/lib/openjdk/bin && echo *); do - if [ "$i" = java ]; then continue; fi - if cmp -s $out/lib/openjdk/bin/$i $jre/lib/openjdk/jre/bin/$i; then - ln -sfn $jre/lib/openjdk/jre/bin/$i $out/lib/openjdk/bin/$i - fi - done - ln -s $out/lib/openjdk/bin $out/bin - ln -s $jre/lib/openjdk/jre/bin $jre/bin - ln -s $jre/lib/openjdk/jre $out/jre ''; - # FIXME: this is unnecessary once the multiple-outputs branch is merged. preFixup = '' - prefix=$jre stripDirs "$STRIP" "$stripDebugList" "''${stripDebugFlags:--S}" - patchELF $jre - propagatedBuildInputs+=" $jre" - - # Propagate the setJavaClassPath setup hook from the JRE so that - # any package that depends on the JRE has $CLASSPATH set up - # properly. - mkdir -p $jre/nix-support + # Propagate the setJavaClassPath setup hook so that any package + # that depends on the JDK has $CLASSPATH set up properly. + mkdir -p $out/nix-support #TODO or printWords? cf https://github.com/NixOS/nixpkgs/pull/27427#issuecomment-317293040 - echo -n "${setJavaClassPath}" > $jre/nix-support/propagated-build-inputs + echo -n "${setJavaClassPath}" > $out/nix-support/propagated-build-inputs # Set JAVA_HOME automatically. mkdir -p $out/nix-support @@ -196,7 +166,7 @@ let passthru = { inherit architecture; - home = "${openjdk10}/lib/openjdk"; + home = "${openjdk}/lib/openjdk"; }; }; -in openjdk10 +in openjdk diff --git a/pkgs/development/compilers/openjdk/bootstrap.nix b/pkgs/development/compilers/openjdk/bootstrap.nix index 612f0db058215b27b91ad0cb787ad2aec989df41..1b20ca6cc606000c939276da93de7a0bd58e1ecd 100644 --- a/pkgs/development/compilers/openjdk/bootstrap.nix +++ b/pkgs/development/compilers/openjdk/bootstrap.nix @@ -16,12 +16,12 @@ let src = if stdenv.hostPlatform.system == "x86_64-linux" then (if version == "10" then fetchboot "10" "x86_64" "08085fsxc1qhqiv3yi38w8lrg3vm7s0m2yvnwr1c92v019806yq2" else if version == "8" then fetchboot "8" "x86_64" "18zqx6jhm3lizn9hh6ryyqc9dz3i96pwaz8f6nxfllk70qi5gvks" - else throw "No bootstrap for version") + else throw "No bootstrap jdk for version ${version}") else if stdenv.hostPlatform.system == "i686-linux" then (if version == "10" then fetchboot "10" "i686" "1blb9gyzp8gfyggxvggqgpcgfcyi00ndnnskipwgdm031qva94p7" else if version == "8" then fetchboot "8" "i686" "1yx04xh8bqz7amg12d13rw5vwa008rav59mxjw1b9s6ynkvfgqq9" else throw "No bootstrap for version") - else throw "No bootstrap for system"; + else throw "No bootstrap jdk for system ${stdenv.hostPlatform.system}"; bootstrap = runCommand "openjdk-bootstrap" { passthru.home = "${bootstrap}/lib/openjdk"; diff --git a/pkgs/development/compilers/openjdk/darwin/10.nix b/pkgs/development/compilers/openjdk/darwin/11.nix similarity index 79% rename from pkgs/development/compilers/openjdk/darwin/10.nix rename to pkgs/development/compilers/openjdk/darwin/11.nix index 4969c12bff2609d767f5fc778b371ce1a5a68b8e..61c2d57423e449e2435f815696ad1c9599fbab2f 100644 --- a/pkgs/development/compilers/openjdk/darwin/10.nix +++ b/pkgs/development/compilers/openjdk/darwin/11.nix @@ -6,13 +6,13 @@ let sha256 = "0nk7m0lgcbsvldq2wbfni2pzq8h818523z912i7v8hdcij5s48c0"; }; - jdk = stdenv.mkDerivation { - name = "zulu10.3+5-jdk10"; + jdk = stdenv.mkDerivation rec { + name = "zulu11.2.3-jdk11.0.1"; src = fetchurl { - url = https://cdn.azul.com/zulu/bin/zulu10.3+5-jdk10.0.2-macosx_x64.zip; - sha256 = "05pxfjn8fqw6ddr8m5hzyphwzqgrq8w6b4h3lwc1s7ymh05xmspz"; - curlOpts = "-H Referer:https://www.azul.com/downloads/zulu/zulu-linux/"; + url = "https://cdn.azul.com/zulu/bin/${name}-macosx_x64.tar.gz"; + sha256 = "1jxnxmy79inwf3146ygry1mzv3dj6yrzqll16j7dpr91x1p3dpqy"; + curlOpts = "-H Referer:https://www.azul.com/downloads/zulu/zulu-mac/"; }; buildInputs = [ unzip freetype ]; @@ -34,8 +34,8 @@ let ''; preFixup = '' - # Propagate the setJavaClassPath setup hook from the JRE so that - # any package that depends on the JRE has $CLASSPATH set up + # Propagate the setJavaClassPath setup hook from the JDK so that + # any package that depends on the JDK has $CLASSPATH set up # properly. mkdir -p $out/nix-support printWords ${setJavaClassPath} > $out/nix-support/propagated-build-inputs @@ -49,7 +49,6 @@ let ''; passthru = { - jre = jdk; home = jdk; }; diff --git a/pkgs/development/compilers/oraclejdk/jdk10-linux.nix b/pkgs/development/compilers/oraclejdk/jdk10-linux.nix deleted file mode 100644 index 23f44331dd897f44e1174066b2da3a46001dbdeb..0000000000000000000000000000000000000000 --- a/pkgs/development/compilers/oraclejdk/jdk10-linux.nix +++ /dev/null @@ -1,156 +0,0 @@ -{ swingSupport ? true -, stdenv -, requireFile -, makeWrapper -, file -, xorg ? null -, packageType ? "JDK" # JDK, JRE, or ServerJRE -, glib -, libxml2 -, ffmpeg_2 -, libxslt -, libGL -, freetype -, fontconfig -, gtk2 -, pango -, cairo -, alsaLib -, atk -, gdk_pixbuf -, zlib -, elfutils -, setJavaClassPath -}: - -assert swingSupport -> xorg != null; - -let - version = "10.0.2"; - - downloadUrlBase = http://www.oracle.com/technetwork/java/javase/downloads; - - rSubPaths = [ - "lib/jli" - "lib/server" - "lib" - ]; - -in - -let result = stdenv.mkDerivation rec { - name = if packageType == "JDK" then "oraclejdk-${version}" - else if packageType == "JRE" then "oraclejre-${version}" - else if packageType == "ServerJRE" then "oracleserverjre-${version}" - else abort "unknown package Type ${packageType}"; - - src = - if packageType == "JDK" then - requireFile { - name = "jdk-${version}_linux-x64_bin.tar.gz"; - url = "${downloadUrlBase}/jdk10-downloads-4416644.html"; - sha256 = "0arpzac64apji1s8d0gzizkvrjz0fbhz7l34af1j0365ac6w4cv6"; - } - else if packageType == "JRE" then - requireFile { - name = "jre-${version}_linux-x64_bin.tar.gz"; - url = "${downloadUrlBase}/jre10-downloads-4417026.html"; - sha256 = "0pc4a0a3fl6874vfaflf6jvpm9da647vp41pj0hihkspjyjhjabx"; - } - else if packageType == "ServerJRE" then - requireFile { - name = "serverjre-${version}_linux-x64_bin.tar.gz"; - url = "${downloadUrlBase}/sjre10-downloads-4417025.html"; - sha256 = "0hbcb4c6ncy0sbz02gyygyqcwkz0xpv4fwrx4sripia6vph9592c"; - } - else abort "unknown package Type ${packageType}"; - - nativeBuildInputs = [ file ]; - - buildInputs = [ makeWrapper ]; - - # See: https://github.com/NixOS/patchelf/issues/10 - dontStrip = 1; - - installPhase = '' - cd .. - - # Set PaX markings - exes=$(file $sourceRoot/bin/* 2> /dev/null | grep -E 'ELF.*(executable|shared object)' | sed -e 's/: .*$//') - for file in $exes; do - paxmark m "$file" - # On x86 for heap sizes over 700MB disable SEGMEXEC and PAGEEXEC as well. - ${stdenv.lib.optionalString stdenv.isi686 ''paxmark msp "$file"''} - done - - mv $sourceRoot $out - - shopt -s extglob - for file in $out/* - do - if test -f $file ; then - rm $file - fi - done - - if test -z "$pluginSupport"; then - rm -f $out/bin/javaws - fi - - mkdir $out/lib/plugins - ln -s $out/lib/libnpjp2.so $out/lib/plugins - - # for backward compatibility - ln -s $out $out/jre - - mkdir -p $out/nix-support - printWords ${setJavaClassPath} > $out/nix-support/propagated-build-inputs - - # Set JAVA_HOME automatically. - cat <> $out/nix-support/setup-hook - if [ -z "\$JAVA_HOME" ]; then export JAVA_HOME=$out; fi - EOF - ''; - - postFixup = '' - rpath+="''${rpath:+:}${stdenv.lib.concatStringsSep ":" (map (a: "$out/${a}") rSubPaths)}" - - # set all the dynamic linkers - find $out -type f -perm -0100 \ - -exec patchelf --interpreter "$(cat $NIX_CC/nix-support/dynamic-linker)" \ - --set-rpath "$rpath" {} \; - - find $out -name "*.so" -exec patchelf --set-rpath "$rpath" {} \; - - # Oracle Java Mission Control needs to know where libgtk-x11 and related is - if test -x $out/bin/jmc; then - wrapProgram "$out/bin/jmc" \ - --suffix-each LD_LIBRARY_PATH ':' "$rpath" - fi - ''; - - /** - * libXt is only needed on amd64 - */ - libraries = - [stdenv.cc.libc glib libxml2 ffmpeg_2 libxslt libGL xorg.libXxf86vm alsaLib fontconfig freetype pango gtk2 cairo gdk_pixbuf atk zlib elfutils] ++ - (if swingSupport then [xorg.libX11 xorg.libXext xorg.libXtst xorg.libXi xorg.libXp xorg.libXt xorg.libXrender stdenv.cc.cc] else []); - - rpath = stdenv.lib.strings.makeLibraryPath libraries; - - passthru.mozillaPlugin = "/lib/plugins"; - - passthru.jre = result; # FIXME: use multiple outputs or return actual JRE package - - passthru.home = result; - - # for backward compatibility - passthru.architecture = ""; - - meta = with stdenv.lib; { - license = licenses.unfree; - platforms = [ "x86_64-linux" ]; # some inherit jre.meta.platforms - knownVulnerabilities = [ "Support ended in September 2018. Use OpenJDK or JDK 8." ]; - }; - -}; in result diff --git a/pkgs/development/compilers/purescript/psc-package/default.nix b/pkgs/development/compilers/purescript/psc-package/default.nix index dac8b0279ad9309170e9ab39da7f3df278e83e43..24043ce477404fb429f387dd353a112f8eb6f2b1 100644 --- a/pkgs/development/compilers/purescript/psc-package/default.nix +++ b/pkgs/development/compilers/purescript/psc-package/default.nix @@ -4,13 +4,13 @@ with lib; mkDerivation rec { pname = "psc-package"; - version = "0.4.1"; + version = "0.4.2"; src = fetchFromGitHub { owner = "purescript"; repo = pname; rev = "v${version}"; - sha256 = "1pbgijglyqrm998a6z5ahp4phd72crzr3s8vq17a9dz3i0a9hcj5"; + sha256 = "0xvnmpfj4c6h4gmc2c3d4gcs44527jrgfl11l2fs4ai1mc69w5zg"; }; isLibrary = false; diff --git a/pkgs/development/compilers/reason/default.nix b/pkgs/development/compilers/reason/default.nix index 0832d14992d1ab5f028b423de6d746d362af524f..1b84b9348520d50b8b068c0ca30ec1828a705328 100644 --- a/pkgs/development/compilers/reason/default.nix +++ b/pkgs/development/compilers/reason/default.nix @@ -21,12 +21,9 @@ stdenv.mkDerivation rec { buildFlags = [ "build" ]; # do not "make tests" before reason lib is installed - installPhase = '' - for p in reason rtop - do - ${dune.installPhase} $p.install - done + inherit (dune) installPhase; + postInstall = '' wrapProgram $out/bin/rtop \ --prefix PATH : "${utop}/bin" \ --set OCAMLPATH $out/lib/ocaml/${ocaml.version}/site-lib:$OCAMLPATH diff --git a/pkgs/development/compilers/sbcl/default.nix b/pkgs/development/compilers/sbcl/default.nix index 334ecbb168baeb2c038dc98cecd80319e05d3ce5..1ef6dd065705976d64dd270a42e555ec5308019f 100644 --- a/pkgs/development/compilers/sbcl/default.nix +++ b/pkgs/development/compilers/sbcl/default.nix @@ -5,17 +5,20 @@ # Note that the created binaries still need `patchelf --set-interpreter ...` # to get rid of ${glibc} dependency. , purgeNixReferences ? false +, texinfo }: stdenv.mkDerivation rec { name = "sbcl-${version}"; - version = "1.4.12"; + version = "1.4.13"; src = fetchurl { url = "mirror://sourceforge/project/sbcl/sbcl/${version}/${name}-source.tar.bz2"; - sha256 = "0maa4h5zdykq050hdqk5wd74dhl6k7br3qrhfd4f2387skk8ky7a"; + sha256 = "120rnnz8367lk7ljqlf8xidm4b0d738xqsib4kq0q5ms5r7fzgvm"; }; + buildInputs = [texinfo]; + patchPhase = '' echo '"${version}.nixos"' > version.lisp-expr echo " @@ -46,11 +49,6 @@ stdenv.mkDerivation rec { '/date defaulted-source/i(or (and (= 2208988801 (file-write-date defaulted-source-truename)) (= 2208988801 (file-write-date defaulted-fasl-truename)))' # Fix the tests - sed -e '/deftest pwent/inil' -i contrib/sb-posix/posix-tests.lisp - sed -e '/deftest grent/inil' -i contrib/sb-posix/posix-tests.lisp - sed -e '/deftest .*ent.non-existing/,+5d' -i contrib/sb-posix/posix-tests.lisp - sed -e '/deftest \(pw\|gr\)ent/,+3d' -i contrib/sb-posix/posix-tests.lisp - sed -e '5,$d' -i contrib/sb-bsd-sockets/tests.lisp sed -e '5,$d' -i contrib/sb-simple-streams/*test*.lisp @@ -83,6 +81,7 @@ stdenv.mkDerivation rec { buildPhase = '' sh make.sh --prefix=$out --xc-host="${sbclBootstrapHost}" + (cd doc/manual ; make info) ''; installPhase = '' diff --git a/pkgs/development/compilers/swift/default.nix b/pkgs/development/compilers/swift/default.nix index 233eb6647c09a8fc4f5d99f27f0a283058af9196..bbfa1be8f921e0e2d0e1bf2b06a936f97dfffc84 100644 --- a/pkgs/development/compilers/swift/default.nix +++ b/pkgs/development/compilers/swift/default.nix @@ -32,11 +32,10 @@ , makeWrapper , gnumake , file -#, systemtap }: let - v_base = "4.1.3"; + v_base = "4.2.1"; version = "${v_base}-RELEASE"; version_friendly = "${v_base}"; @@ -54,15 +53,15 @@ let # For more inforation, see: https://github.com/apple/swift/pull/3594#issuecomment-234169759 clang = fetch { repo = "swift-clang"; - sha256 = "0j8bi6jv4m4hqiib02q5cvnxd9j6bwiri853x6px86vai3mdff0h"; + sha256 = "0l6w4xzpl3w2nax9a0b885nfzhfj38p2g99158nb5bzfd4s0man7"; }; llvm = fetch { repo = "swift-llvm"; - sha256 = "0q5cv4iydm8c1kcax32573y3q2cbpihwgj5aa8ws1fnpy4jvq934"; + sha256 = "1664zwxbq0a1cmxr9n5a0vw6vdk6ygr7rpglpdsfc7ki857vpsyv"; }; compilerrt = fetch { repo = "swift-compiler-rt"; - sha256 = "1wkymmxi2v759xkwlzfrq9rivndjfvp6ikrzz10mvvrvyvrgwqnl"; + sha256 = "19s6qxn4i0kxpf39xjp2i7zg427iinbmaxqkbb1p91g616y367sf"; }; cmark = fetch { repo = "swift-cmark"; @@ -70,32 +69,32 @@ let }; lldb = fetch { repo = "swift-lldb"; - sha256 = "1d0pa7xm289bjb6r52hkkmlngkqkwbwgixnmm30bin2q18mkxk7s"; + sha256 = "00kz0xhj1p6ckyandj2gs1yfl29kxv84x9pfph00r8crbkd2jz7b"; }; llbuild = fetch { repo = "swift-llbuild"; - sha256 = "04y0ihfyam2n671vmpk9gy0gb9lb3ivh6mr19862p5kg5bmrcic1"; + sha256 = "1mkkhydshhxr28igbldzr0hhqvb6ql43cpf3ba5vglfkbcz6wh6q"; }; pm = fetch { repo = "swift-package-manager"; - sha256 = "08d87fc29qq7m92jaxkiczsa7b567pwbibiwwkzdrj6a0gr11qn3"; + sha256 = "1aqvmgq9g5zs4k2qnkvw3h3mar66d690hqq6g2dmrapsyb321j9l"; }; xctest = fetch { repo = "swift-corelibs-xctest"; - sha256 = "1alkgxx8jsr2jjv2kchnjaaddb1byjwim015m1z3qxh6lknqm0k5"; + sha256 = "1n4w7bfgy73vjzbvbphlwayy0dw73bbrayrpkqq8lbidg0x9lam8"; }; foundation = fetch { repo = "swift-corelibs-foundation"; - sha256 = "1bhrag63rmz41bg2g6ap01qrdpq37hislgf5hg6myy2v69q7mahx"; + sha256 = "1bfnkj8s3v327cy0czkngz0ryzmz7amjzkkxbsg2zyrhf9a9f0f7"; }; libdispatch = fetch { repo = "swift-corelibs-libdispatch"; - sha256 = "198vskbajch8s168a649qz5an92i2mxmmmzcjlgxlzh38fgxri0n"; + sha256 = "0fibrx54nbaawhsgd7cbr356ji9qvf8y8ahd5bdx28fpj6q0cnwc"; fetchSubmodules = true; }; swift = fetch { repo = "swift"; - sha256 = "1ydx11pkvaasgjbr29lnha0lpnak758gd5l0aqzmp3q6mcyvfm7a"; + sha256 = "0y277wi0m6zp1yph9s14mmc65m21q5fm6lgzkn2rkrbaz25fdzak"; }; }; @@ -111,7 +110,6 @@ let ncurses sqlite swig - # systemtap? ]; cmakeFlags = [ @@ -215,8 +213,11 @@ stdenv.mkDerivation rec { substituteInPlace swift/stdlib/public/Platform/CMakeLists.txt \ --replace '/usr/include' "${stdenv.cc.libc.dev}/include" + substituteInPlace swift-corelibs-libdispatch/src/CMakeLists.txt \ + --replace '/usr/include' "${stdenv.cc.libc.dev}/include" substituteInPlace swift/utils/build-script-impl \ --replace '/usr/include/c++' "${clang.cc.gcc}/include/c++" + patch -p1 -d swift -i ${./patches/glibc-arch-headers.patch} '' + stdenv.lib.optionalString stdenv.needsPax '' patch -p1 -d swift -i ${./patches/build-script-pax.patch} '' + '' @@ -228,24 +229,24 @@ stdenv.mkDerivation rec { -e 's/^test-installable-package$/# \0/' \ -e 's/^test$/# \0/' \ -e 's/^validation-test$/# \0/' \ - -e 's/^long-test$/# \0/' + -e 's/^long-test$/# \0/' \ + -e 's/^stress-test$/# \0/' \ + -e 's/^test-optimized$/# \0/' # https://bugs.swift.org/browse/SR-5779 sed -i -e 's|"-latomic"|"-Wl,-rpath,${clang.cc.gcc.lib}/lib" "-L${clang.cc.gcc.lib}/lib" "-latomic"|' swift/cmake/modules/AddSwift.cmake substituteInPlace clang/lib/Driver/ToolChains/Linux.cpp \ - --replace ' addPathIfExists(D, SysRoot + "/usr/lib", Paths);' \ - ' addPathIfExists(D, SysRoot + "/usr/lib", Paths); addPathIfExists(D, "${glibc}/lib", Paths);' + --replace 'SysRoot + "/usr/lib' '"${glibc}/lib" "' + patch -p1 -d clang -i ${./patches/llvm-include-dirs.patch} patch -p1 -d clang -i ${./purity.patch} # Workaround hardcoded dep on "libcurses" (vs "libncurses"): sed -i 's,curses,ncurses,' llbuild/*/*/CMakeLists.txt - # This test fails on one of my machines, not sure why. - # Disabling for now. - rm llbuild/tests/Examples/buildsystem-capi.llbuild - PREFIX=''${out/#\/} + substituteInPlace swift-corelibs-foundation/build.py \ + --replace usr/lib "$PREFIX/lib" substituteInPlace swift-corelibs-xctest/build_script.py \ --replace usr "$PREFIX" substituteInPlace swiftpm/Utilities/bootstrap \ @@ -263,6 +264,7 @@ stdenv.mkDerivation rec { # Extract the generated tarball into the store PREFIX=''${out/#\/} tar xf $INSTALLABLE_PACKAGE -C $out --strip-components=3 $PREFIX + find $out -type d -empty -delete paxmark pmr $out/bin/swift paxmark pmr $out/bin/* @@ -290,4 +292,3 @@ stdenv.mkDerivation rec { broken = stdenv.isAarch64; # 2018-09-04, never built on Hydra }; } - diff --git a/pkgs/development/compilers/swift/patches/0001-build-presets-linux-don-t-require-using-Ninja.patch b/pkgs/development/compilers/swift/patches/0001-build-presets-linux-don-t-require-using-Ninja.patch index 6ef83754a674a17053c2cf890bbe0f0f2bf7962b..f2b30e5dcdb6e95eabc4455b515fb1f217ee9597 100644 --- a/pkgs/development/compilers/swift/patches/0001-build-presets-linux-don-t-require-using-Ninja.patch +++ b/pkgs/development/compilers/swift/patches/0001-build-presets-linux-don-t-require-using-Ninja.patch @@ -11,7 +11,7 @@ diff --git a/utils/build-presets.ini b/utils/build-presets.ini index 7ee57ad2df..e6b0af3581 100644 --- a/utils/build-presets.ini +++ b/utils/build-presets.ini -@@ -686,7 +686,7 @@ swiftpm +@@ -717,7 +717,7 @@ swiftpm xctest dash-dash diff --git a/pkgs/development/compilers/swift/patches/0002-build-presets-linux-allow-custom-install-prefix.patch b/pkgs/development/compilers/swift/patches/0002-build-presets-linux-allow-custom-install-prefix.patch index 66723f1cdf3910798c5d9fec4c7e19e25bb18322..612b33cdb48376beae11caaf985a172ea1dd95a9 100644 --- a/pkgs/development/compilers/swift/patches/0002-build-presets-linux-allow-custom-install-prefix.patch +++ b/pkgs/development/compilers/swift/patches/0002-build-presets-linux-allow-custom-install-prefix.patch @@ -11,7 +11,7 @@ diff --git a/utils/build-presets.ini b/utils/build-presets.ini index e6b0af3581..1095cbaab7 100644 --- a/utils/build-presets.ini +++ b/utils/build-presets.ini -@@ -708,7 +708,7 @@ install-lldb +@@ -723,7 +723,7 @@ install-lldb install-llbuild install-swiftpm install-xctest diff --git a/pkgs/development/compilers/swift/patches/0004-build-presets-linux-plumb-extra-cmake-options.patch b/pkgs/development/compilers/swift/patches/0004-build-presets-linux-plumb-extra-cmake-options.patch index 5493196303cd287ff10785f000478a653f7ef8ab..e84c7eb2a08ad05467155e8113b1b1681e4f285c 100644 --- a/pkgs/development/compilers/swift/patches/0004-build-presets-linux-plumb-extra-cmake-options.patch +++ b/pkgs/development/compilers/swift/patches/0004-build-presets-linux-plumb-extra-cmake-options.patch @@ -11,7 +11,7 @@ diff --git a/utils/build-presets.ini b/utils/build-presets.ini index 1739e91dc2..0608fed9c1 100644 --- a/utils/build-presets.ini +++ b/utils/build-presets.ini -@@ -708,6 +708,8 @@ install-destdir=%(install_destdir)s +@@ -740,6 +740,8 @@ install-destdir=%(install_destdir)s # Path to the .tar.gz package we would create. installable-package=%(installable_package)s diff --git a/pkgs/development/compilers/swift/patches/build-script-pax.patch b/pkgs/development/compilers/swift/patches/build-script-pax.patch index fa2ccdf9d5c6a8a51bc23ff58f215c8e6bd8a296..1f47bf8ee04527c7a2295af14fd2861b3fd236bb 100644 --- a/pkgs/development/compilers/swift/patches/build-script-pax.patch +++ b/pkgs/development/compilers/swift/patches/build-script-pax.patch @@ -1,6 +1,6 @@ --- swift/utils/build-script-impl 2017-01-23 12:47:20.401326309 -0600 +++ swift-pax/utils/build-script-impl 2017-01-23 13:24:10.339366996 -0600 -@@ -1823,6 +1823,17 @@ function set_lldb_xcodebuild_options() { +@@ -1837,6 +1837,17 @@ function set_lldb_xcodebuild_options() { fi } @@ -18,7 +18,7 @@ # # Configure and build each product # -@@ -2624,6 +2634,12 @@ for host in "${ALL_HOSTS[@]}"; do +@@ -2735,6 +2746,12 @@ for host in "${ALL_HOSTS[@]}"; do fi call "${CMAKE_BUILD[@]}" "${build_dir}" $(cmake_config_opt ${product}) -- "${BUILD_ARGS[@]}" ${build_targets[@]} diff --git a/pkgs/development/compilers/swift/patches/glibc-arch-headers.patch b/pkgs/development/compilers/swift/patches/glibc-arch-headers.patch new file mode 100644 index 0000000000000000000000000000000000000000..650e1a2429d46bb726226138a79dff81422fe249 --- /dev/null +++ b/pkgs/development/compilers/swift/patches/glibc-arch-headers.patch @@ -0,0 +1,13 @@ +The Nix glibc headers do not use include/x86_64-linux-gnu subdirectories. + +--- swift/stdlib/public/Platform/CMakeLists.txt 2018-09-30 17:51:51.581766303 +0200 ++++ swift/stdlib/public/Platform/CMakeLists.txt 2018-09-30 18:40:04.118956708 +0200 +@@ -65,7 +65,7 @@ + endif() + + set(GLIBC_INCLUDE_PATH "${GLIBC_SYSROOT_RELATIVE_INCLUDE_PATH}") +- set(GLIBC_ARCH_INCLUDE_PATH "${GLIBC_SYSROOT_RELATIVE_ARCH_INCLUDE_PATH}") ++ set(GLIBC_ARCH_INCLUDE_PATH "${GLIBC_SYSROOT_RELATIVE_INCLUDE_PATH}") + + if(NOT "${SWIFT_SDK_${sdk}_ARCH_${arch}_PATH}" STREQUAL "/") + set(GLIBC_INCLUDE_PATH "${SWIFT_SDK_${sdk}_ARCH_${arch}_PATH}${GLIBC_INCLUDE_PATH}") diff --git a/pkgs/development/compilers/swift/patches/llvm-include-dirs.patch b/pkgs/development/compilers/swift/patches/llvm-include-dirs.patch new file mode 100644 index 0000000000000000000000000000000000000000..9523943c48014b0a38df215601d8d66a1be27a7e --- /dev/null +++ b/pkgs/development/compilers/swift/patches/llvm-include-dirs.patch @@ -0,0 +1,13 @@ +Only use the Nix include dirs when no sysroot is configured. + +--- clang/lib/Driver/ToolChains/Linux.cpp 2018-10-05 18:01:15.731109551 +0200 ++++ clang/lib/Driver/ToolChains/Linux.cpp 2018-10-05 18:00:27.959509924 +0200 +@@ -565,7 +565,7 @@ + + // Check for configure-time C include directories. + StringRef CIncludeDirs(C_INCLUDE_DIRS); +- if (CIncludeDirs != "") { ++ if (CIncludeDirs != "" && (SysRoot.empty() || SysRoot == "/")) { + SmallVector dirs; + CIncludeDirs.split(dirs, ":"); + for (StringRef dir : dirs) { diff --git a/pkgs/development/compilers/swift/purity.patch b/pkgs/development/compilers/swift/purity.patch index b30d0d0b5d5b51aeef7062a1152fc378948e009b..d10e407260a51bf1cd9904479f795590cf9520d0 100644 --- a/pkgs/development/compilers/swift/purity.patch +++ b/pkgs/development/compilers/swift/purity.patch @@ -11,7 +11,7 @@ diff --git a/lib/Driver/ToolChains/Gnu.cpp b/lib/Driver/ToolChains/Gnu.cpp index fe3c0191bb..c6a482bece 100644 --- a/lib/Driver/ToolChains/Gnu.cpp +++ b/lib/Driver/ToolChains/Gnu.cpp -@@ -494,13 +494,6 @@ void tools::gnutools::Linker::ConstructJob(Compilation &C, const JobAction &JA, +@@ -398,13 +398,6 @@ void tools::gnutools::Linker::ConstructJob(Compilation &C, const JobAction &JA, if (!Args.hasArg(options::OPT_static)) { if (Args.hasArg(options::OPT_rdynamic)) CmdArgs.push_back("-export-dynamic"); diff --git a/pkgs/development/compilers/x11basic/default.nix b/pkgs/development/compilers/x11basic/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..a26bc41c5945d4f30c131c2331a340f00acbd7a2 --- /dev/null +++ b/pkgs/development/compilers/x11basic/default.nix @@ -0,0 +1,48 @@ +{ stdenv, lib, fetchFromGitHub +, automake, autoconf, readline +, libX11, bluez, SDL2 +}: + +stdenv.mkDerivation rec { + pname = "X11basic"; + version = "1.26"; + name = pname + "-" + version; + + src = fetchFromGitHub { + owner = "kollokollo"; + repo = pname; + rev = version; + sha256 = "0rwj9cf496xailply0rgw695bzdladh2dhy7vdqac1pwbkl53nvd"; + }; + + buildInputs = [ + autoconf automake readline libX11 SDL2 bluez + ]; + + preConfigure = "cd src;autoconf"; + + configureFlags = [ + "--with-bluetooth" + "--with-usb" + "--with-readline" + "--with-sdl" + "--with-x" + "--enable-cryptography" + ]; + + preInstall = '' + touch x11basic.{eps,svg} + mkdir -p $out/{bin,lib} + mkdir -p $out/share/{applications,icons/hicolor/scalable/apps} + cp -r ../examples $out/share/. + ''; + + meta = with stdenv.lib; { + homepage = http://x11-basic.sourceforge.net/; + description = "A Basic interpreter and compiler with graphics capabilities."; + license = licenses.gpl2; + maintainers = with maintainers; [ edwtjo ]; + platforms = platforms.unix; + }; + +} diff --git a/pkgs/development/coq-modules/autosubst/default.nix b/pkgs/development/coq-modules/autosubst/default.nix index 9c24e77e0f782c8d1549573c8639be58f94adbb0..bffa5172b0e4786e87fdc30960b81f1a909d45ef 100644 --- a/pkgs/development/coq-modules/autosubst/default.nix +++ b/pkgs/development/coq-modules/autosubst/default.nix @@ -11,6 +11,7 @@ stdenv.mkDerivation rec { sha256 = "06pcjbngzwqyncvfwzz88j33wvdj9kizxyg5adp7y6186h8an341"; }; + buildInputs = [ coq ]; propagatedBuildInputs = [ mathcomp ]; patches = [./0001-changes-to-work-with-Coq-8.6.patch]; diff --git a/pkgs/development/coq-modules/contribs/default.nix b/pkgs/development/coq-modules/contribs/default.nix index d12d3fefb9444cffeaf9a5ed42573aae0fc7ad03..a1ecdd610a3e53532b777fe9c0eea09ca54fc4db 100644 --- a/pkgs/development/coq-modules/contribs/default.nix +++ b/pkgs/development/coq-modules/contribs/default.nix @@ -1018,7 +1018,7 @@ let mkContrib = repo: revs: param: sha256 = "0fp3vdl79c8d759qjhk42rjfpkd0ba4pcw572f5gxn28kfwz3rrj"; }; - zfc = mkContrib "zfc" [ "8.5" "8.6" "8.7" ] { + zfc = mkContrib "zfc" [ "8.5" "8.6" "8.7" "8.8" ] { version = "v8.5.0-5-gbba3259"; rev = "bba325933370fea64780b1afa2fad54c1b567819"; sha256 = "0iwkpmc22nwasrk4g7ki4s5y05zjs7kmqk3j98giwp2wiavhgapn"; diff --git a/pkgs/development/coq-modules/fiat/HEAD.nix b/pkgs/development/coq-modules/fiat/HEAD.nix index a064064fd919a9aa9e3557dd0433a3508f173a95..4abaec6528a974ed1bd05b7620d72ee450d00e59 100644 --- a/pkgs/development/coq-modules/fiat/HEAD.nix +++ b/pkgs/development/coq-modules/fiat/HEAD.nix @@ -11,8 +11,9 @@ stdenv.mkDerivation rec { sha256 = "0griqc675yylf9rvadlfsabz41qy5f5idya30p5rv6ysiakxya64"; }; - buildInputs = with coq.ocamlPackages; [ ocaml camlp5 python27 ]; - propagatedBuildInputs = [ coq ]; + buildInputs = [ coq python27 ] ++ (with coq.ocamlPackages; [ ocaml camlp5 ]); + + prePatch = "patchShebangs etc/coq-scripts"; doCheck = false; diff --git a/pkgs/development/coq-modules/mathcomp/default.nix b/pkgs/development/coq-modules/mathcomp/default.nix index 92c3c87774ab79e47bdb38471787a7d82278bfcd..1e5b6b7bf6668effcb487c668ae06c98d10d1552 100644 --- a/pkgs/development/coq-modules/mathcomp/default.nix +++ b/pkgs/development/coq-modules/mathcomp/default.nix @@ -1,29 +1,65 @@ -{ callPackage, fetchurl, coq }: +{ stdenv, fetchFromGitHub, coq, ncurses, which +, graphviz, withDoc ? false +}: let param = - let param_1_7 = { - version = "1.7.0"; - sha256 = "05zgyi4wmasi1rcyn5jq42w0bi9713q9m8dl1fdgl66nmacixh39"; - }; in - + if stdenv.lib.versionAtLeast coq.coq-version "8.6" then + { + version = "1.7.0"; + sha256 = "0wnhj9nqpx2bw6n1l4i8jgrw3pjajvckvj3lr4vzjb3my2lbxdd1"; + } + else if stdenv.lib.versionAtLeast coq.coq-version "8.5" then { - "8.5" = { - version = "1.6.1"; - sha256 = "1j9ylggjzrxz1i2hdl2yhsvmvy5z6l4rprwx7604401080p5sgjw"; - }; - - "8.6" = param_1_7; - "8.7" = param_1_7; - "8.8" = param_1_7; - - }."${coq.coq-version}" -; in - -callPackage ./generic.nix { - name = "coq${coq.coq-version}-mathcomp-${param.version}"; - src = fetchurl { - url = "https://github.com/math-comp/math-comp/archive/mathcomp-${param.version}.tar.gz"; + version = "1.6.1"; + sha256 = "1ilw6vm4dlsdv9cd7kmf0vfrh2kkzr45wrqr8m37miy0byzr4p9i"; + } + else throw "No version of math-comp is available for Coq ${coq.coq-version}"; + +in + +stdenv.mkDerivation rec { + name = "coq${coq.coq-version}-mathcomp-${version}"; + + # used in ssreflect + inherit (param) version; + + src = fetchFromGitHub { + owner = "math-comp"; + repo = "math-comp"; + rev = "mathcomp-${param.version}"; inherit (param) sha256; }; + + nativeBuildInputs = stdenv.lib.optionals withDoc [ graphviz ]; + buildInputs = [ coq ncurses which ] ++ (with coq.ocamlPackages; [ ocaml findlib camlp5 ]); + + enableParallelBuilding = true; + + buildFlags = stdenv.lib.optionalString withDoc "doc"; + + COQBIN = "${coq}/bin/"; + + preBuild = '' + patchShebangs etc/utils/ssrcoqdep || true + cd mathcomp + ''; + + installPhase = '' + make -f Makefile.coq COQLIB=$out/lib/coq/${coq.coq-version}/ install + '' + stdenv.lib.optionalString withDoc '' + make -f Makefile.coq install-doc DOCDIR=$out/share/coq/${coq.coq-version}/ + ''; + + meta = with stdenv.lib; { + homepage = http://ssr.msr-inria.inria.fr/; + license = licenses.cecill-b; + maintainers = [ maintainers.vbgl maintainers.jwiegley ]; + platforms = coq.meta.platforms; + }; + + passthru = { + compatibleCoqVersions = v: stdenv.lib.versionAtLeast v "8.5"; + }; + } diff --git a/pkgs/development/coq-modules/mathcomp/generic.nix b/pkgs/development/coq-modules/mathcomp/generic.nix deleted file mode 100644 index 2a602711965f0f8f228bdfa9ec91a10e161f5314..0000000000000000000000000000000000000000 --- a/pkgs/development/coq-modules/mathcomp/generic.nix +++ /dev/null @@ -1,42 +0,0 @@ -{ stdenv, coq, ncurses, which -, graphviz, withDoc ? false -, src, name -}: - -stdenv.mkDerivation { - - inherit name; - inherit src; - - nativeBuildInputs = stdenv.lib.optionals withDoc [ graphviz ]; - buildInputs = with coq.ocamlPackages; [ ocaml findlib camlp5 ncurses which ]; - propagatedBuildInputs = [ coq ]; - - enableParallelBuilding = true; - - buildFlags = stdenv.lib.optionalString withDoc "doc"; - - preBuild = '' - patchShebangs etc/utils/ssrcoqdep || true - cd mathcomp - export COQBIN=${coq}/bin/ - ''; - - installPhase = '' - make -f Makefile.coq COQLIB=$out/lib/coq/${coq.coq-version}/ install - '' + stdenv.lib.optionalString withDoc '' - make -f Makefile.coq install-doc DOCDIR=$out/share/coq/${coq.coq-version}/ - ''; - - meta = with stdenv.lib; { - homepage = http://ssr.msr-inria.inria.fr/; - license = licenses.cecill-b; - maintainers = [ maintainers.vbgl maintainers.jwiegley ]; - platforms = coq.meta.platforms; - }; - - passthru = { - compatibleCoqVersions = v: builtins.elem v [ "8.5" "8.6" "8.7" "8.8" ]; - }; - -} diff --git a/pkgs/development/coq-modules/ssreflect/default.nix b/pkgs/development/coq-modules/ssreflect/default.nix index 9e9c3c7957aa20535b26c933a11f4cf6b166fac9..1fcb7e2da8ae5c4069a69ed6a225b6879067a63f 100644 --- a/pkgs/development/coq-modules/ssreflect/default.nix +++ b/pkgs/development/coq-modules/ssreflect/default.nix @@ -1,29 +1,32 @@ -{ callPackage, fetchurl, coq }: - -let param = - - let param_1_7 = { - version = "1.7.0"; - sha256 = "05zgyi4wmasi1rcyn5jq42w0bi9713q9m8dl1fdgl66nmacixh39"; - }; in - - { - "8.5" = { - version = "1.6.1"; - sha256 = "1j9ylggjzrxz1i2hdl2yhsvmvy5z6l4rprwx7604401080p5sgjw"; - }; - - "8.6" = param_1_7; - "8.7" = param_1_7; - "8.8" = param_1_7; - - }."${coq.coq-version}" -; in - -callPackage ./generic.nix { - name = "coq${coq.coq-version}-ssreflect-${param.version}"; - src = fetchurl { - url = "https://github.com/math-comp/math-comp/archive/mathcomp-${param.version}.tar.gz"; - inherit (param) sha256; - }; +{ stdenv, fetchFromGitHub, coq, ncurses, which +, graphviz, mathcomp, withDoc ? false +}: + +stdenv.mkDerivation rec { + name = "coq${coq.coq-version}-ssreflect-${version}"; + + inherit (mathcomp) src version meta; + + nativeBuildInputs = stdenv.lib.optionals withDoc [ graphviz ]; + buildInputs = [ coq ncurses which ] ++ (with coq.ocamlPackages; [ ocaml findlib camlp5 ]); + + enableParallelBuilding = true; + + COQBIN = "${coq}/bin/"; + + preBuild = '' + patchShebangs etc/utils/ssrcoqdep || true + cd mathcomp/ssreflect + ''; + + installPhase = '' + make -f Makefile.coq COQLIB=$out/lib/coq/${coq.coq-version}/ install + ''; + + postInstall = stdenv.lib.optionalString withDoc '' + mkdir -p $out/share/doc/coq/${coq.coq-version}/user-contrib/mathcomp/ssreflect/ + cp -r html $out/share/doc/coq/${coq.coq-version}/user-contrib/mathcomp/ssreflect/ + ''; + + passthru.compatibleCoqVersions = mathcomp.compatibleCoqVersions; } diff --git a/pkgs/development/coq-modules/ssreflect/generic.nix b/pkgs/development/coq-modules/ssreflect/generic.nix deleted file mode 100644 index 23e364cd960d301c33923dd64620b2fbb98cc9b6..0000000000000000000000000000000000000000 --- a/pkgs/development/coq-modules/ssreflect/generic.nix +++ /dev/null @@ -1,49 +0,0 @@ -{ stdenv, coq, ncurses, which -, graphviz, withDoc ? false -, src, name, patches ? [] -}: - -stdenv.mkDerivation { - - inherit name; - inherit src; - - nativeBuildInputs = stdenv.lib.optionals withDoc [ graphviz ]; - buildInputs = with coq.ocamlPackages; [ ocaml findlib camlp5 ncurses which ]; - propagatedBuildInputs = [ coq ]; - - enableParallelBuilding = true; - - inherit patches; - - preBuild = '' - patchShebangs etc/utils/ssrcoqdep || true - cd mathcomp/ssreflect - export COQBIN=${coq}/bin/ - ''; - - installPhase = '' - make -f Makefile.coq COQLIB=$out/lib/coq/${coq.coq-version}/ install - ''; - - postInstall = '' - # mkdir -p $out/bin - # cp -p bin/ssrcoq $out/bin - # cp -p bin/ssrcoq.byte $out/bin - '' + stdenv.lib.optionalString withDoc '' - mkdir -p $out/share/doc/coq/${coq.coq-version}/user-contrib/mathcomp/ssreflect/ - cp -r html $out/share/doc/coq/${coq.coq-version}/user-contrib/mathcomp/ssreflect/ - ''; - - meta = with stdenv.lib; { - homepage = http://ssr.msr-inria.inria.fr/; - license = licenses.cecill-b; - maintainers = with maintainers; [ vbgl jwiegley ]; - platforms = coq.meta.platforms; - }; - - passthru = { - compatibleCoqVersions = v: builtins.elem v [ "8.5" "8.6" "8.7" "8.8" ]; - }; - -} diff --git a/pkgs/development/dhall-modules/default.nix b/pkgs/development/dhall-modules/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..b6632a86f31fcbd6c4e2bba8cbf1e01e100c6b81 --- /dev/null +++ b/pkgs/development/dhall-modules/default.nix @@ -0,0 +1,9 @@ +{ pkgs }: + +# TODO: add into the toplevel fixpoint instead of using rec +rec { + + prelude = prelude_3_0_0; + prelude_3_0_0 = pkgs.callPackage ./prelude/v3.nix {}; + +} diff --git a/pkgs/development/dhall-modules/prelude/v3.nix b/pkgs/development/dhall-modules/prelude/v3.nix new file mode 100644 index 0000000000000000000000000000000000000000..ef673310ceb0592f83f3fae321fa84fcfaefc89e --- /dev/null +++ b/pkgs/development/dhall-modules/prelude/v3.nix @@ -0,0 +1,25 @@ +{ stdenv, lib, fetchFromGitHub }: + +stdenv.mkDerivation { + name = "dhall-prelude"; + + src = fetchFromGitHub { + owner = "dhall-lang"; + repo = "dhall-lang"; + # Commit where the v3.0.0 prelude folder was merged into dhall-lang + # and a LICENSE file has been added. + rev = "f6aa9399f1ac831d66c34104abe6856023c5b2df"; + sha256 = "0kqjgh3y1l3cb3rj381j7c09547g1vh2dsfzpm08y1qajhhf9vgf"; + }; + + phases = [ "unpackPhase" "installPhase" ]; + + installPhase = '' + cp -r Prelude $out + ''; + + meta = { + license = lib.licenses.bsd3; + maintainers = with lib.maintainers; [ Profpatsch ]; + }; +} diff --git a/pkgs/development/haskell-modules/configuration-common.nix b/pkgs/development/haskell-modules/configuration-common.nix index 33f498d922b0d2007508c1d724e46f491b112b66..690551a425589c89eb69211ab76072e9ec2e63b0 100644 --- a/pkgs/development/haskell-modules/configuration-common.nix +++ b/pkgs/development/haskell-modules/configuration-common.nix @@ -86,7 +86,7 @@ self: super: { name = "git-annex-${super.git-annex.version}-src"; url = "git://git-annex.branchable.com/"; rev = "refs/tags/" + super.git-annex.version; - sha256 = "069w4gdb104lc3vp48k3wywmgql56yc5g2g2i240xrr88in3qvqw"; + sha256 = "0dnrihpdshrldais74jm5wjfw650i4va8znc1k2zq8gl9p4i8p39"; }; }).override { dbus = if pkgs.stdenv.isLinux then self.dbus else null; @@ -242,13 +242,19 @@ self: super: { # This is due to GenList having been removed from generic-random in 1.2.0.0 # doJailbreak: Can be removed once https://github.com/haskell-nix/hnix/pull/329 is in (5.2 probably) # This is due to hnix currently having an upper bound of <0.5 on deriving-compat, works just fine with our current version 0.5.1 though - hnix = dontCheck (doJailbreak (overrideCabal super.hnix (old: { - testHaskellDepends = old.testHaskellDepends or [] ++ [ pkgs.nix ]; - }))); + hnix = + generateOptparseApplicativeCompletion "hnix" ( + dontCheck (doJailbreak (overrideCabal super.hnix (old: { + testHaskellDepends = old.testHaskellDepends or [] ++ [ pkgs.nix ]; + })))); # Fails for non-obvious reasons while attempting to use doctest. search = dontCheck super.search; + # see https://github.com/LumiGuide/haskell-opencv/commit/cd613e200aa20887ded83256cf67d6903c207a60 + opencv = dontCheck (appendPatch super.opencv ./patches/opencv-fix-116.patch); + opencv-extra = dontCheck (appendPatch super.opencv-extra ./patches/opencv-fix-116.patch); + # https://github.com/ekmett/structures/issues/3 structures = dontCheck super.structures; @@ -370,6 +376,7 @@ self: super: { safecopy = dontCheck super.safecopy; sai-shape-syb = dontCheck super.sai-shape-syb; scp-streams = dontCheck super.scp-streams; + sdl2 = dontCheck super.sdl2; # the test suite needs an x server sdl2-ttf = dontCheck super.sdl2-ttf; # as of version 0.2.1, the test suite requires user intervention separated = dontCheck super.separated; shadowsocks = dontCheck super.shadowsocks; @@ -712,7 +719,9 @@ self: super: { }); # The standard libraries are compiled separately - idris = doJailbreak (dontCheck super.idris); + idris = generateOptparseApplicativeCompletion "idris" ( + doJailbreak (dontCheck super.idris) + ); # https://github.com/bos/math-functions/issues/25 math-functions = dontCheck super.math-functions; @@ -1046,7 +1055,20 @@ self: super: { vector-algorithms = dontCheck super.vector-algorithms; # The test suite attempts to use the network. - dhall = dontCheck super.dhall; + dhall = + generateOptparseApplicativeCompletion "dhall" ( + dontCheck super.dhall + ); + + dhall-json = + generateOptparseApplicativeCompletions ["dhall-to-json" "dhall-to-yaml"] ( + super.dhall-json + ); + + dhall-nix = + generateOptparseApplicativeCompletion "dhall-to-nix" ( + super.dhall-nix + ); # https://github.com/well-typed/cborg/issues/174 cborg = doJailbreak super.cborg; @@ -1063,14 +1085,18 @@ self: super: { # haddock-library_1_6_0 = doJailbreak (dontCheck super.haddock-library_1_6_0); # The tool needs a newer hpack version than the one mandated by LTS-12.x. - cabal2nix = super.cabal2nix.overrideScope (self: super: { - hpack = self.hpack_0_31_0; - yaml = self.yaml_0_11_0_0; - }); + # Also generate shell completions. + cabal2nix = generateOptparseApplicativeCompletion "cabal2nix" + (super.cabal2nix.overrideScope (self: super: { + hpack = self.hpack_0_31_1; + yaml = self.yaml_0_11_0_0; + })); stack2nix = super.stack2nix.overrideScope (self: super: { - hpack = self.hpack_0_31_0; + hpack = self.hpack_0_31_1; yaml = self.yaml_0_11_0_0; }); + # Break out of "aeson <1.3, temporary <1.3". + stack = generateOptparseApplicativeCompletion "stack" (doJailbreak super.stack); # https://github.com/pikajude/stylish-cabal/issues/11 stylish-cabal = super.stylish-cabal.override { hspec = self.hspec_2_4_8; hspec-core = self.hspec-core_2_4_8; }; @@ -1111,6 +1137,9 @@ self: super: { # https://github.com/snapframework/xmlhtml/pull/37 xmlhtml = doJailbreak super.xmlhtml; + # Generate shell completions + purescript = generateOptparseApplicativeCompletion "purs" super.purescript; + # https://github.com/NixOS/nixpkgs/issues/46467 safe-money-aeson = super.safe-money-aeson.overrideScope (self: super: { safe-money = self.safe-money_0_7; }); safe-money-store = super.safe-money-store.overrideScope (self: super: { safe-money = self.safe-money_0_7; }); @@ -1150,4 +1179,7 @@ self: super: { # https://github.com/danfran/cabal-macosx/issues/13 cabal-macosx = dontCheck super.cabal-macosx; + # https://github.com/DanielG/cabal-helper/issues/59 + cabal-helper = doJailbreak super.cabal-helper; + } // import ./configuration-tensorflow.nix {inherit pkgs haskellLib;} self super diff --git a/pkgs/development/haskell-modules/configuration-ghc-7.10.x.nix b/pkgs/development/haskell-modules/configuration-ghc-7.10.x.nix deleted file mode 100644 index 85efecc8ed3be610e4afdb79588f24289979187c..0000000000000000000000000000000000000000 --- a/pkgs/development/haskell-modules/configuration-ghc-7.10.x.nix +++ /dev/null @@ -1,239 +0,0 @@ -{ pkgs, haskellLib }: - -with haskellLib; - -self: super: { - - # Suitable LLVM version. - llvmPackages = pkgs.llvmPackages_35; - - # Disable GHC 7.10.x core libraries. - array = null; - base = null; - binary = null; - bin-package-db = null; - bytestring = null; - Cabal = null; - containers = null; - deepseq = null; - directory = null; - filepath = null; - ghc-boot = null; - ghc-boot-th = null; - ghc-prim = null; - ghci = null; - haskeline = null; - hoopl = null; - hpc = null; - integer-gmp = null; - pretty = null; - process = null; - rts = null; - template-haskell = null; - terminfo = null; - time = null; - transformers = null; - unix = null; - xhtml = null; - - # These are now core libraries in GHC 8.4.x. - mtl = self.mtl_2_2_2; - parsec = self.parsec_3_1_13_0; - parsec_3_1_13_0 = addBuildDepends super.parsec_3_1_13_0 [self.fail self.semigroups]; - stm = self.stm_2_5_0_0; - text = self.text_1_2_3_1; - - # Build jailbreak-cabal with the latest version of Cabal. - jailbreak-cabal = super.jailbreak-cabal.override { Cabal = self.Cabal_1_24_2_0; }; - - gtk2hs-buildtools = super.gtk2hs-buildtools.override { Cabal = self.buildHaskellPackages.Cabal_1_24_2_0; }; - - # https://github.com/mrkkrp/megaparsec/issues/282 - megaparsec = addBuildDepend (dontCheck super.megaparsec) self.fail; - - Extra = appendPatch super.Extra (pkgs.fetchpatch { - url = "https://github.com/seereason/sr-extra/commit/29787ad4c20c962924b823d02a7335da98143603.patch"; - sha256 = "193i1xmq6z0jalwmq0mhqk1khz6zz0i1hs6lgfd7ybd6qyaqnf5f"; - }); - - # Requires ghc 8.2 - ghc-proofs = dontDistribute super.ghc-proofs; - - # haddock: No input file(s). - nats = dontHaddock super.nats; - bytestring-builder = dontHaddock super.bytestring-builder; - - # Setup: At least the following dependencies are missing: base <4.8 - hspec-expectations = overrideCabal super.hspec-expectations (drv: { - postPatch = "sed -i -e 's|base < 4.8|base|' hspec-expectations.cabal"; - }); - utf8-string = overrideCabal super.utf8-string (drv: { - postPatch = "sed -i -e 's|base >= 3 && < 4.8|base|' utf8-string.cabal"; - }); - - # acid-state/safecopy#25 acid-state/safecopy#26 - safecopy = dontCheck (super.safecopy); - - # test suite broken, some instance is declared twice. - # https://bitbucket.org/FlorianHartwig/attobencode/issue/1 - AttoBencode = dontCheck super.AttoBencode; - - # Test suite fails with some (seemingly harmless) error. - # https://code.google.com/p/scrapyourboilerplate/issues/detail?id=24 - syb = dontCheck super.syb; - - # Test suite has stricter version bounds - retry = dontCheck super.retry; - - # test/System/Posix/Types/OrphansSpec.hs:19:13: - # Not in scope: type constructor or class ‘Int32’ - base-orphans = dontCheck super.base-orphans; - - # Test suite fails with time >= 1.5 - http-date = dontCheck super.http-date; - - # Version 1.19.5 fails its test suite. - happy = dontCheck super.happy; - - # Upstream was notified about the over-specified constraint on 'base' - # but refused to do anything about it because he "doesn't want to - # support a moving target". Go figure. - barecheck = doJailbreak super.barecheck; - - # https://github.com/kazu-yamamoto/unix-time/issues/30 - unix-time = dontCheck super.unix-time; - - # diagrams/monoid-extras#19 - monoid-extras = overrideCabal super.monoid-extras (drv: { - prePatch = "sed -i 's|4\.8|4.9|' monoid-extras.cabal"; - }); - - # diagrams/statestack#5 - statestack = overrideCabal super.statestack (drv: { - prePatch = "sed -i 's|4\.8|4.9|' statestack.cabal"; - }); - - # diagrams/diagrams-core#83 - diagrams-core = overrideCabal super.diagrams-core (drv: { - prePatch = "sed -i 's|4\.8|4.9|' diagrams-core.cabal"; - }); - - timezone-olson = doJailbreak super.timezone-olson; - xmonad-extras = overrideCabal super.xmonad-extras (drv: { - postPatch = '' - sed -i -e "s,<\*,<¤,g" XMonad/Actions/Volume.hs - ''; - }); - - # Workaround for a workaround, see comment for "ghcjs" flag. - jsaddle = let jsaddle' = disableCabalFlag super.jsaddle "ghcjs"; - in addBuildDepends jsaddle' [ self.glib self.gtk3 self.webkitgtk3 - self.webkitgtk3-javascriptcore ]; - - # https://github.com/lymar/hastache/issues/47 - hastache = dontCheck super.hastache; - - # The compat library is empty in the presence of mtl 2.2.x. - mtl-compat = dontHaddock super.mtl-compat; - - # https://github.com/bos/bloomfilter/issues/11 - bloomfilter = dontHaddock (appendConfigureFlag super.bloomfilter "--ghc-option=-XFlexibleContexts"); - - # https://github.com/ocharles/tasty-rerun/issues/5 - tasty-rerun = dontHaddock (appendConfigureFlag super.tasty-rerun "--ghc-option=-XFlexibleContexts"); - - # http://hub.darcs.net/ivanm/graphviz/issue/5 - graphviz = dontCheck (appendPatch super.graphviz ./patches/graphviz-fix-ghc710.patch); - - # https://github.com/HugoDaniel/RFC3339/issues/14 - timerep = dontCheck super.timerep; - - # Required to fix version 0.91.0.0. - wx = dontHaddock (appendConfigureFlag super.wx "--ghc-option=-XFlexibleContexts"); - - # Inexplicable haddock failure - # https://github.com/gregwebs/aeson-applicative/issues/2 - aeson-applicative = dontHaddock super.aeson-applicative; - - # GHC 7.10.1 is affected by https://github.com/srijs/hwsl2/issues/1. - hwsl2 = dontCheck super.hwsl2; - - # https://github.com/haskell/haddock/issues/427 - haddock = dontCheck self.haddock_2_16_1; - - # haddock-api >= 2.17 is GHC 8.0 only - haddock-api = self.haddock-api_2_16_1; - haddock-library = self.haddock-library_1_2_1; - - # The tests in vty-ui do not build, but vty-ui itself builds. - vty-ui = enableCabalFlag super.vty-ui "no-tests"; - - # https://github.com/fpco/stackage/issues/1112 - vector-algorithms = addBuildDepends (dontCheck super.vector-algorithms) [ self.mtl self.mwc-random ]; - - # vector with ghc < 8.0 needs semigroups - vector = addBuildDepend super.vector self.semigroups; - - # too strict dependency on directory - tasty-ant-xml = doJailbreak super.tasty-ant-xml; - - # https://github.com/thoughtpolice/hs-ed25519/issues/13 - ed25519 = dontCheck super.ed25519; - - # Breaks a dependency cycle between QuickCheck and semigroups - hashable = dontCheck super.hashable; - unordered-containers = dontCheck super.unordered-containers; - - # GHC versions prior to 8.x require additional build inputs. - aeson = disableCabalFlag (addBuildDepend super.aeson self.semigroups) "old-locale"; - ansi-wl-pprint = addBuildDepend super.ansi-wl-pprint self.semigroups; - attoparsec = addBuildDepends super.attoparsec (with self; [semigroups fail]); - bytes = addBuildDepend super.bytes self.doctest; - case-insensitive = addBuildDepend super.case-insensitive self.semigroups; - cmdargs = addBuildDepend super.cmdargs self.semigroups; - contravariant = addBuildDepend super.contravariant self.semigroups; - dependent-map = addBuildDepend super.dependent-map self.semigroups; - distributive = addBuildDepend (dontCheck super.distributive) self.semigroups; - Glob = addBuildDepends super.Glob (with self; [semigroups]); - hoauth2 = overrideCabal super.hoauth2 (drv: { testDepends = (drv.testDepends or []) ++ [ self.wai self.warp ]; }); - hslogger = addBuildDepend super.hslogger self.HUnit; - intervals = addBuildDepends super.intervals (with self; [doctest QuickCheck]); - lens = addBuildDepend super.lens self.generic-deriving; - mono-traversable = addBuildDepend super.mono-traversable self.semigroups; - natural-transformation = addBuildDepend super.natural-transformation self.semigroups; - optparse-applicative = addBuildDepends super.optparse-applicative [self.semigroups self.fail]; - parser-combinators = addBuildDepend super.parser-combinators self.semigroups; - QuickCheck = addBuildDepend super.QuickCheck self.semigroups; - reflection = addBuildDepend super.reflection self.semigroups; - semigroups = addBuildDepends (dontCheck super.semigroups) (with self; [hashable tagged text unordered-containers]); - tar = addBuildDepend super.tar self.semigroups; - texmath = addBuildDepend super.texmath self.network-uri; - yesod-auth-oauth2 = overrideCabal super.yesod-auth-oauth2 (drv: { testDepends = (drv.testDepends or []) ++ [ self.load-env self.yesod ]; }); - - # cereal must have `fail` in pre-ghc-8.0.x versions and tests require - # bytestring>=0.10.8.1. - cereal = dontCheck (addBuildDepend super.cereal self.fail); - - # The test suite requires Cabal 1.24.x or later to compile. - comonad = dontCheck super.comonad; - semigroupoids = dontCheck super.semigroupoids; - - # Newer versions require base >=4.9 && <5. - colour = self.colour_2_3_3; - - # https://github.com/atzedijkstra/chr/issues/1 - chr-pretty = doJailbreak super.chr-pretty; - chr-parse = doJailbreak super.chr-parse; - - # The autogenerated Nix expressions don't take into - # account `if impl(ghc >= x.y)`, which is a common method to depend - # on `semigroups` or `fail` when building with GHC < 8.0. - system-filepath = addBuildDepend super.system-filepath self.semigroups; - haskell-src-exts = addBuildDepend super.haskell-src-exts self.semigroups; - free = addBuildDepend super.free self.fail; - - # Newer versions don't build without base-4.9 - resourcet = self.resourcet_1_1_11; - conduit = self.conduit_1_2_13_1; - -} diff --git a/pkgs/development/haskell-modules/configuration-ghc-8.0.x.nix b/pkgs/development/haskell-modules/configuration-ghc-8.0.x.nix deleted file mode 100644 index 43f769ff6fd54f67da78c7cd7306a1768ed72f1e..0000000000000000000000000000000000000000 --- a/pkgs/development/haskell-modules/configuration-ghc-8.0.x.nix +++ /dev/null @@ -1,91 +0,0 @@ -{ pkgs, haskellLib }: - -with haskellLib; - -self: super: { - - # Suitable LLVM version. - llvmPackages = pkgs.llvmPackages_37; - - # Disable GHC 8.0.x core libraries. - array = null; - base = null; - binary = null; - bytestring = null; - Cabal = null; - containers = null; - deepseq = null; - directory = null; - filepath = null; - ghc-boot = null; - ghc-boot-th = null; - ghc-compact = null; - ghc-prim = null; - ghci = null; - haskeline = null; - hoopl = null; - hpc = null; - integer-gmp = null; - pretty = null; - process = null; - rts = null; - template-haskell = null; - terminfo = null; - time = null; - transformers = null; - unix = null; - xhtml = null; - - # These are now core libraries in GHC 8.4.x. - mtl = self.mtl_2_2_2; - parsec = self.parsec_3_1_13_0; - stm = self.stm_2_5_0_0; - text = self.text_1_2_3_1; - - # https://github.com/bmillwood/applicative-quoters/issues/6 - applicative-quoters = appendPatch super.applicative-quoters (pkgs.fetchpatch { - url = "https://patch-diff.githubusercontent.com/raw/bmillwood/applicative-quoters/pull/7.patch"; - sha256 = "026vv2k3ks73jngwifszv8l59clg88pcdr4mz0wr0gamivkfa1zy"; - }); - - # Requires ghc 8.2 - ghc-proofs = dontDistribute super.ghc-proofs; - - # https://github.com/thoughtbot/yesod-auth-oauth2/pull/77 - yesod-auth-oauth2 = doJailbreak super.yesod-auth-oauth2; - - # https://github.com/nominolo/ghc-syb/issues/20 - ghc-syb-utils = dontCheck super.ghc-syb-utils; - - # Newer versions require ghc>=8.2 - apply-refact = super.apply-refact_0_3_0_1; - - # This builds needs the latest Cabal version. - cabal2nix = super.cabal2nix.overrideScope (self: super: { Cabal = self.Cabal_2_0_1_1; }); - - # Add appropriate Cabal library to build this code. - stack = addSetupDepend super.stack self.Cabal_2_0_1_1; - - # inline-c > 0.5.6.0 requires template-haskell >= 2.12 - inline-c = super.inline-c_0_5_6_1; - inline-c-cpp = super.inline-c-cpp_0_1_0_0; - - # test dep hedgehog pulls in concurrent-output, which does not build - # due to processing version mismatch - either = dontCheck super.either; - - # test dep tasty has a version mismatch - indents = dontCheck super.indents; - - # Newer versions require GHC 8.2. - haddock-library = self.haddock-library_1_4_3; - haddock-api = self.haddock-api_2_17_4; - haddock = self.haddock_2_17_5; - - # GHC 8.0 doesn't have semigroups included by default - ListLike = addBuildDepend super.ListLike self.semigroups; - - # Add missing build depedency for this compiler. - base-compat-batteries = addBuildDepend super.base-compat-batteries self.bifunctors; - -} diff --git a/pkgs/development/haskell-modules/configuration-ghc-8.4.x.nix b/pkgs/development/haskell-modules/configuration-ghc-8.4.x.nix index 213651405f35306dcd3ea7d30199f168cf1b7753..226b437d58b10240bc295b8f9d3928456a218d2b 100644 --- a/pkgs/development/haskell-modules/configuration-ghc-8.4.x.nix +++ b/pkgs/development/haskell-modules/configuration-ghc-8.4.x.nix @@ -63,11 +63,11 @@ self: super: { # more verbose but friendlier for Hydra. stack = (doJailbreak super.stack).override { Cabal = self.Cabal_2_4_0_1; - hpack = self.hpack_0_31_0.override { Cabal = self.Cabal_2_4_0_1; }; + hpack = self.hpack_0_31_1.override { Cabal = self.Cabal_2_4_0_1; }; yaml = self.yaml_0_11_0_0; hackage-security = self.hackage-security.override { Cabal = self.Cabal_2_4_0_1; }; }; - hpack_0_31_0 = super.hpack_0_31_0.override { + hpack_0_31_1 = super.hpack_0_31_1.override { yaml = self.yaml_0_11_0_0; }; diff --git a/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix b/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix index 61f188aeddbcef1618fdc3bfb6588ee8091b43f1..315740b309fa5e98ddcde53d8c82835056dd8e60 100644 --- a/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix +++ b/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix @@ -46,7 +46,7 @@ self: super: { # LTS-12.x versions do not compile. base-orphans = self.base-orphans_0_8; - brick = doJailbreak super.brick_0_41_2; # https://github.com/jtdaugherty/brick/pull/188 + brick = self.brick_0_41_2; cassava-megaparsec = doJailbreak super.cassava-megaparsec; config-ini = doJailbreak super.config-ini; # https://github.com/aisamanra/config-ini/issues/18 contravariant = self.contravariant_1_5; @@ -56,24 +56,25 @@ self: super: { hledger = doJailbreak super.hledger; hledger-lib = doJailbreak super.hledger-lib; hledger-ui = doJailbreak super.hledger-ui; - hpack = self.hpack_0_31_0; + hpack = self.hpack_0_31_1; hslua = self.hslua_1_0_1; hslua-module-text = self.hslua-module-text_0_2_0; - hspec = self.hspec_2_5_8; - hspec-core = self.hspec-core_2_5_8; - hspec-discover = self.hspec-discover_2_5_8; + hspec = self.hspec_2_6_0; + hspec-core = self.hspec-core_2_6_0; + hspec-discover = self.hspec-discover_2_6_0; hspec-megaparsec = doJailbreak super.hspec-megaparsec; # newer versions need megaparsec 7.x hspec-meta = self.hspec-meta_2_5_6; + HTF = dontCheck super.HTF_0_13_2_5; # https://github.com/skogsbaer/HTF/issues/74 JuicyPixels = self.JuicyPixels_3_3_2; lens = self.lens_4_17; megaparsec = dontCheck (doJailbreak super.megaparsec); - neat-interpolation = dontCheck super.neat-interpolation; # test suite depends on broken HTF patience = markBrokenVersion "0.1.1" super.patience; + polyparse = self.polyparse_1_12_1; primitive = self.primitive_0_6_4_0; QuickCheck = self.QuickCheck_2_12_6_1; semigroupoids = self.semigroupoids_5_3_1; tagged = self.tagged_0_8_6; - vty = self.vty_5_25; + vty = self.vty_5_25_1; wizards = doJailbreak super.wizards; wl-pprint-extras = doJailbreak super.wl-pprint-extras; yaml = self.yaml_0_11_0_0; @@ -96,34 +97,13 @@ self: super: { unicode-transforms = dontCheck super.unicode-transforms; monad-par = dontCheck super.monad-par; # https://github.com/simonmar/monad-par/issues/66 - # https://github.com/bmillwood/haskell-src-meta/pull/80 - haskell-src-meta = doJailbreak super.haskell-src-meta; - - # The official 1.12 release is broken and unmaintained. - polyparse = appendPatch (overrideCabal super.polyparse (drv: { editedCabalFile = null; })) (pkgs.fetchpatch { - url = https://github.com/bergmark/polyparse/commit/8a69ee7e57db798c106d8b56dce05b1dfc4fed37.patch; - sha256 = "11r73wx1w6bfrkrnk6r9k7rfzp6qrvkdikb2by37ld06c0w6nn57"; - }); - - # https://github.com/skogsbaer/HTF/issues/69 - HTF = markBrokenVersion "0.13.2.4" super.HTF; - # https://github.com/jgm/skylighting/issues/55 skylighting-core = dontCheck super.skylighting-core; - # https://github.com/joelburget/easytest/issues/12 - easytest = appendPatch super.easytest (pkgs.fetchpatch { - url = https://github.com/joelburget/easytest/pull/13.patch; - sha256 = "0gnsgga8x2yxyg27pya6rhmxfsxf167vsi4xdj98fn8v0j7zz1v1"; - }); - # https://github.com/jgm/pandoc/issues/4974 - pandoc = doJailbreak super.pandoc_2_3_1; + pandoc = doJailbreak super.pandoc_2_4; # Break out of "yaml >=0.10.4.0 && <0.11". stack = doJailbreak super.stack; - # https://github.com/vimus/libmpd-haskell/issues/109 - xmobar = disableCabalFlag (super.xmobar.override { libmpd = null; }) "with_mpd"; - } diff --git a/pkgs/development/haskell-modules/configuration-hackage2nix.yaml b/pkgs/development/haskell-modules/configuration-hackage2nix.yaml index b5f5e1f3675ca2fc3cb232b193eeaa2aca6a4ea4..23f71d57d35e04ddf7ad3714d27635a5bc787e2a 100644 --- a/pkgs/development/haskell-modules/configuration-hackage2nix.yaml +++ b/pkgs/development/haskell-modules/configuration-hackage2nix.yaml @@ -1,6 +1,6 @@ # pkgs/development/haskell-modules/configuration-hackage2nix.yaml -compiler: ghc-8.4.3 +compiler: ghc-8.4.4 core-packages: - array-0.5.2.0 @@ -12,12 +12,12 @@ core-packages: - deepseq-1.4.3.0 - directory-1.3.1.5 - filepath-1.4.2 - - ghc-8.4.3 - - ghc-boot-8.4.3 - - ghc-boot-th-8.4.3 + - ghc-8.4.4 + - ghc-boot-8.4.4 + - ghc-boot-th-8.4.4 - ghc-compact-0.1.0.0 - ghc-prim-0.5.2.0 - - ghci-8.4.3 + - ghci-8.4.4 - haskeline-0.7.4.2 - hpc-0.6.0.3 - integer-gmp-1.0.2.0 @@ -26,10 +26,10 @@ core-packages: - pretty-1.1.3.6 - process-1.6.3.0 - rts-1.0 - - stm-2.4.5.0 + - stm-2.4.5.1 - template-haskell-2.13.0.0 - terminfo-0.4.1.1 - - text-1.2.3.0 + - text-1.2.3.1 - time-1.8.0.2 - transformers-0.5.5.0 - unix-2.7.2.2 @@ -45,7 +45,7 @@ default-package-overrides: - base-compat-batteries ==0.10.1 # Newer versions don't work in LTS-12.x - cassava-megaparsec < 2 - # LTS Haskell 12.14 + # LTS Haskell 12.18 - abstract-deque ==0.3 - abstract-deque-tests ==0.3 - abstract-par ==0.3.3 @@ -73,7 +73,7 @@ default-package-overrides: - aeson-typescript ==0.1.1.0 - aeson-utils ==0.3.0.2 - aeson-yak ==0.1.1.3 - - Agda ==2.5.4.1 + - Agda ==2.5.4.2 - al ==0.1.4.2 - alarmclock ==0.5.0.2 - alerts ==0.1.0.0 @@ -180,7 +180,7 @@ default-package-overrides: - amazonka-xray ==1.6.0 - amqp ==0.18.1 - annotated-wl-pprint ==0.7.0 - - ansi-terminal ==0.8.1 + - ansi-terminal ==0.8.2 - ansi-wl-pprint ==0.6.8.2 - ANum ==0.2.0.2 - api-field-json-th ==0.1.0.2 @@ -436,7 +436,7 @@ default-package-overrides: - concurrency ==1.6.1.0 - concurrent-extra ==0.7.0.12 - concurrent-output ==1.10.7 - - concurrent-split ==0.0.1 + - concurrent-split ==0.0.1.1 - concurrent-supply ==0.1.8 - cond ==0.4.1.1 - conduit ==1.3.1 @@ -552,7 +552,7 @@ default-package-overrides: - data-serializer ==0.3.4 - datasets ==0.2.5 - data-textual ==0.3.0.2 - - data-tree-print ==0.1.0.1 + - data-tree-print ==0.1.0.2 - dataurl ==0.1.0.0 - DAV ==1.3.2 - dawg-ord ==0.5.1.0 @@ -638,7 +638,7 @@ default-package-overrides: - dyre ==0.8.12 - Earley ==0.12.1.0 - easy-file ==0.2.2 - - easytest ==0.2 + - easytest ==0.2.1 - Ebnf2ps ==1.0.15 - echo ==0.1.3 - ed25519 ==0.0.5.0 @@ -842,9 +842,9 @@ default-package-overrides: - gi-glib ==2.0.17 - gi-gobject ==2.0.16 - gi-gtk ==3.0.25 - - gi-gtk-hs ==0.3.6.2 + - gi-gtk-hs ==0.3.6.3 - gi-gtksource ==3.0.16 - - gi-javascriptcore ==4.0.15 + - gi-javascriptcore ==4.0.16 - gio ==0.13.5.0 - gi-pango ==1.0.16 - giphy-api ==0.6.0.1 @@ -880,6 +880,12 @@ default-package-overrides: - greskell-core ==0.1.2.4 - greskell-websocket ==0.1.1.2 - groom ==0.1.2.1 + - groundhog ==0.9.0 + - groundhog-inspector ==0.9.0 + - groundhog-mysql ==0.9.0 + - groundhog-postgresql ==0.9.0.1 + - groundhog-sqlite ==0.9.0 + - groundhog-th ==0.9.0.1 - groups ==0.4.1.0 - gtk ==0.14.10 - gtk2hs-buildtools ==0.13.4.0 @@ -896,7 +902,7 @@ default-package-overrides: - hamtsolo ==1.0.3 - HandsomeSoup ==0.4.2 - handwriting ==0.1.0.3 - - hapistrano ==0.3.6.1 + - hapistrano ==0.3.7.0 - happstack-server ==7.5.1.1 - happy ==1.19.9 - hasbolt ==0.1.3.0 @@ -1050,7 +1056,7 @@ default-package-overrides: - html-entity-map ==0.1.0.0 - htoml ==1.0.0.3 - HTTP ==4000.3.12 - - http2 ==1.6.3 + - http2 ==1.6.4 - http-api-data ==0.3.8.1 - http-client ==0.5.13.1 - http-client-openssl ==0.2.2.0 @@ -1085,7 +1091,7 @@ default-package-overrides: - hw-mquery ==0.1.0.1 - hworker ==0.1.0.1 - hw-parser ==0.0.0.3 - - hw-prim ==0.6.2.17 + - hw-prim ==0.6.2.18 - hw-rankselect ==0.10.0.3 - hw-rankselect-base ==0.3.2.1 - hw-string-parse ==0.0.0.4 @@ -1248,7 +1254,7 @@ default-package-overrides: - libffi ==0.1 - libgit ==0.3.1 - libgraph ==1.14 - - libmpd ==0.9.0.8 + - libmpd ==0.9.0.9 - libxml-sax ==0.7.5 - LibZip ==1.0.1 - lifted-async ==0.10.0.3 @@ -1442,6 +1448,7 @@ default-package-overrides: - network-anonymous-i2p ==0.10.0 - network-anonymous-tor ==0.11.0 - network-attoparsec ==0.12.2 + - network-byte-order ==0.0.0.0 - network-conduit-tls ==1.3.2 - network-house ==0.1.0.2 - network-info ==0.2.0.10 @@ -1523,7 +1530,7 @@ default-package-overrides: - palette ==0.3.0.1 - pandoc ==2.2.1 - pandoc-citeproc ==0.14.8 - - pandoc-types ==1.17.5.2 + - pandoc-types ==1.17.5.4 - pango ==0.13.5.0 - papillon ==0.1.0.6 - parallel ==3.2.2.0 @@ -1746,7 +1753,7 @@ default-package-overrides: - require ==0.2.1 - req-url-extra ==0.1.0.0 - reroute ==0.5.0.0 - - resolv ==0.1.1.1 + - resolv ==0.1.1.2 - resource-pool ==0.2.3.2 - resourcet ==1.2.2 - rest-stringmap ==0.2.0.7 @@ -1781,7 +1788,7 @@ default-package-overrides: - sample-frame ==0.0.3 - sample-frame-np ==0.0.4.1 - sampling ==0.3.3 - - sandi ==0.4.2 + - sandi ==0.4.3 - sandman ==0.2.0.1 - say ==0.1.0.1 - sbp ==2.3.17 @@ -1871,11 +1878,11 @@ default-package-overrides: - siggy-chardust ==1.0.0 - signal ==0.1.0.4 - silently ==1.2.5 - - simple-cmd ==0.1.1 + - simple-cmd ==0.1.2 - simple-reflect ==0.3.3 - simple-sendfile ==0.2.27 - simplest-sqlite ==0.1.0.0 - - simple-vec3 ==0.4.0.8 + - simple-vec3 ==0.4.0.9 - since ==0.0.0 - singleton-bool ==0.1.4 - singleton-nats ==0.4.2 @@ -1952,7 +1959,7 @@ default-package-overrides: - storable-record ==0.0.4 - storable-tuple ==0.0.3.3 - storablevector ==0.2.13 - - store ==0.5.0 + - store ==0.5.0.1 - store-core ==0.4.4 - Strafunski-StrategyLib ==5.0.1.0 - stratosphere ==0.24.4 @@ -2042,7 +2049,7 @@ default-package-overrides: - test-framework-th ==0.2.4 - testing-feat ==1.1.0.0 - testing-type-modifiers ==0.1.0.1 - - texmath ==0.11.1.1 + - texmath ==0.11.1.2 - text ==1.2.3.1 - text-binary ==0.2.1.1 - text-builder ==0.5.4.3 @@ -2133,7 +2140,7 @@ default-package-overrides: - type-level-kv-list ==1.1.0 - type-level-numbers ==0.1.1.1 - typelits-witnesses ==0.3.0.3 - - typenums ==0.1.2 + - typenums ==0.1.2.1 - type-of-html ==1.4.0.1 - type-of-html-static ==0.1.0.2 - type-operators ==0.1.0.4 @@ -2206,7 +2213,7 @@ default-package-overrides: - vec ==0.1 - vector ==0.12.0.1 - vector-algorithms ==0.7.0.4 - - vector-binary-instances ==0.2.5 + - vector-binary-instances ==0.2.5.1 - vector-buffer ==0.4.1 - vector-builder ==0.3.6 - vector-bytes-instances ==0.1.1 @@ -2301,10 +2308,10 @@ default-package-overrides: - X11 ==1.9 - X11-xft ==0.3.1 - x11-xim ==0.0.9.0 - - x509 ==1.7.4 - - x509-store ==1.6.6 + - x509 ==1.7.5 + - x509-store ==1.6.7 - x509-system ==1.6.6 - - x509-validation ==1.6.10 + - x509-validation ==1.6.11 - Xauth ==0.1 - xdg-basedir ==0.2.2 - xeno ==0.3.4 @@ -2580,6 +2587,7 @@ dont-distribute-packages: fltkhs-demos: [ i686-linux, x86_64-linux, x86_64-darwin ] fltkhs-fluid-demos: [ i686-linux, x86_64-linux, x86_64-darwin ] fltkhs-hello-world: [ i686-linux, x86_64-linux, x86_64-darwin ] + fltkhs-themes: [ i686-linux, x86_64-linux, x86_64-darwin ] ghcjs-dom-hello: [ i686-linux, x86_64-linux, x86_64-darwin ] ghcjs-dom-webkit: [ i686-linux, x86_64-linux, x86_64-darwin ] gi-javascriptcore: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -2879,6 +2887,7 @@ dont-distribute-packages: arpa: [ i686-linux, x86_64-linux, x86_64-darwin ] arpack: [ i686-linux, x86_64-linux, x86_64-darwin ] array-forth: [ i686-linux, x86_64-linux, x86_64-darwin ] + arraylist: [ i686-linux, x86_64-linux, x86_64-darwin ] ArrayRef: [ i686-linux, x86_64-linux, x86_64-darwin ] arrow-improve: [ i686-linux, x86_64-linux, x86_64-darwin ] arrowapply-utils: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -3025,6 +3034,7 @@ dont-distribute-packages: barrie: [ i686-linux, x86_64-linux, x86_64-darwin ] barrier-monad: [ i686-linux, x86_64-linux, x86_64-darwin ] barrier: [ i686-linux, x86_64-linux, x86_64-darwin ] + base-compat-migrate: [ i686-linux, x86_64-linux, x86_64-darwin ] base-feature-macros: [ i686-linux, x86_64-linux, x86_64-darwin ] base-generics: [ i686-linux, x86_64-linux, x86_64-darwin ] base-io-access: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -3048,6 +3058,7 @@ dont-distribute-packages: beam-th: [ i686-linux, x86_64-linux, x86_64-darwin ] beam: [ i686-linux, x86_64-linux, x86_64-darwin ] beamable: [ i686-linux, x86_64-linux, x86_64-darwin ] + bearriver: [ i686-linux, x86_64-linux, x86_64-darwin ] beautifHOL: [ i686-linux, x86_64-linux, x86_64-darwin ] bed-and-breakfast: [ i686-linux, x86_64-linux, x86_64-darwin ] beeminder-api: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -3354,6 +3365,7 @@ dont-distribute-packages: campfire: [ i686-linux, x86_64-linux, x86_64-darwin ] canon: [ i686-linux, x86_64-linux, x86_64-darwin ] canonical-filepath: [ i686-linux, x86_64-linux, x86_64-darwin ] + canonical-json: [ i686-linux, x86_64-linux, x86_64-darwin ] canteven-http: [ i686-linux, x86_64-linux, x86_64-darwin ] canteven-listen-http: [ i686-linux, x86_64-linux, x86_64-darwin ] canteven-log: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -3607,6 +3619,7 @@ dont-distribute-packages: combinatorial-problems: [ i686-linux, x86_64-linux, x86_64-darwin ] Combinatorrent: [ i686-linux, x86_64-linux, x86_64-darwin ] combobuffer: [ i686-linux, x86_64-linux, x86_64-darwin ] + comfort-array: [ i686-linux, x86_64-linux, x86_64-darwin ] comic: [ i686-linux, x86_64-linux, x86_64-darwin ] Command: [ i686-linux, x86_64-linux, x86_64-darwin ] commander: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -3673,6 +3686,7 @@ dont-distribute-packages: conduit-tokenize-attoparsec: [ i686-linux, x86_64-linux, x86_64-darwin ] conduit-zstd: [ i686-linux, x86_64-linux, x86_64-darwin ] conf: [ i686-linux, x86_64-linux, x86_64-darwin ] + confcrypt: [ i686-linux, x86_64-linux, x86_64-darwin ] conffmt: [ i686-linux, x86_64-linux, x86_64-darwin ] confide: [ i686-linux, x86_64-linux, x86_64-darwin ] config-parser: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -3831,6 +3845,7 @@ dont-distribute-packages: ctpl: [ i686-linux, x86_64-linux, x86_64-darwin ] cube: [ i686-linux, x86_64-linux, x86_64-darwin ] cubical: [ i686-linux, x86_64-linux, x86_64-darwin ] + cuboid: [ i686-linux, x86_64-linux, x86_64-darwin ] cudd: [ i686-linux, x86_64-linux, x86_64-darwin ] currency-convert: [ i686-linux, x86_64-linux, x86_64-darwin ] curry-base: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -4240,6 +4255,7 @@ dont-distribute-packages: ehaskell: [ i686-linux, x86_64-linux, x86_64-darwin ] ehs: [ i686-linux, x86_64-linux, x86_64-darwin ] eibd-client-simple: [ i686-linux, x86_64-linux, x86_64-darwin ] + eigen: [ i686-linux, x86_64-linux, x86_64-darwin ] Eight-Ball-Pool-Hack-Cheats: [ i686-linux, x86_64-linux, x86_64-darwin ] either-list-functions: [ i686-linux, x86_64-linux, x86_64-darwin ] EitherT: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -4290,6 +4306,7 @@ dont-distribute-packages: enummapmap: [ i686-linux, x86_64-linux, x86_64-darwin ] enummapset-th: [ i686-linux, x86_64-linux, x86_64-darwin ] env-parser: [ i686-linux, x86_64-linux, x86_64-darwin ] + envstatus: [ i686-linux, x86_64-linux, x86_64-darwin ] epanet-haskell: [ i686-linux, x86_64-linux, x86_64-darwin ] epass: [ i686-linux, x86_64-linux, x86_64-darwin ] epic: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -4361,6 +4378,7 @@ dont-distribute-packages: execs: [ i686-linux, x86_64-linux, x86_64-darwin ] executor: [ i686-linux, x86_64-linux, x86_64-darwin ] exference: [ i686-linux, x86_64-linux, x86_64-darwin ] + exhaustive: [ i686-linux, x86_64-linux, x86_64-darwin ] exherbo-cabal: [ i686-linux, x86_64-linux, x86_64-darwin ] exif: [ i686-linux, x86_64-linux, x86_64-darwin ] exinst-aeson: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -4890,6 +4908,7 @@ dont-distribute-packages: goatee-gtk: [ i686-linux, x86_64-linux, x86_64-darwin ] goatee: [ i686-linux, x86_64-linux, x86_64-darwin ] gochan: [ i686-linux, x86_64-linux, x86_64-darwin ] + godot-haskell: [ i686-linux, x86_64-linux, x86_64-darwin ] gofer-prelude: [ i686-linux, x86_64-linux, x86_64-darwin ] gogol-adexchange-buyer: [ i686-linux, x86_64-linux, x86_64-darwin ] gogol-adexchange-seller: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -5345,6 +5364,7 @@ dont-distribute-packages: haskell-course-preludes: [ i686-linux, x86_64-linux, x86_64-darwin ] haskell-dap: [ i686-linux, x86_64-linux, x86_64-darwin ] haskell-docs: [ i686-linux, x86_64-linux, x86_64-darwin ] + haskell-eigen-util: [ i686-linux, x86_64-linux, x86_64-darwin ] haskell-formatter: [ i686-linux, x86_64-linux, x86_64-darwin ] haskell-ftp: [ i686-linux, x86_64-linux, x86_64-darwin ] haskell-generate: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -5440,6 +5460,14 @@ dont-distribute-packages: haskore: [ i686-linux, x86_64-linux, x86_64-darwin ] HaskRel: [ i686-linux, x86_64-linux, x86_64-darwin ] hasktags: [ i686-linux, x86_64-linux, x86_64-darwin ] + hasktorch-ffi-th: [ i686-linux, x86_64-linux, x86_64-darwin ] + hasktorch-ffi-thc: [ i686-linux, x86_64-linux, x86_64-darwin ] + hasktorch-indef: [ i686-linux, x86_64-linux, x86_64-darwin ] + hasktorch-signatures-partial: [ i686-linux, x86_64-linux, x86_64-darwin ] + hasktorch-signatures-support: [ i686-linux, x86_64-linux, x86_64-darwin ] + hasktorch-signatures: [ i686-linux, x86_64-linux, x86_64-darwin ] + hasktorch-zoo: [ i686-linux, x86_64-linux, x86_64-darwin ] + hasktorch: [ i686-linux, x86_64-linux, x86_64-darwin ] haskus-binary: [ i686-linux, x86_64-linux, x86_64-darwin ] haskus-system-build: [ i686-linux, x86_64-linux, x86_64-darwin ] haskus-utils: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -5473,6 +5501,7 @@ dont-distribute-packages: HaTeX-meta: [ i686-linux, x86_64-linux, x86_64-darwin ] HaTeX-qq: [ i686-linux, x86_64-linux, x86_64-darwin ] hats: [ i686-linux, x86_64-linux, x86_64-darwin ] + hatt: [ i686-linux, x86_64-linux, x86_64-darwin ] haverer: [ i686-linux, x86_64-linux, x86_64-darwin ] HaVSA: [ i686-linux, x86_64-linux, x86_64-darwin ] hawitter: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -5584,6 +5613,7 @@ dont-distribute-packages: Hermes: [ i686-linux, x86_64-linux, x86_64-darwin ] hermit-syb: [ i686-linux, x86_64-linux, x86_64-darwin ] hermit: [ i686-linux, x86_64-linux, x86_64-darwin ] + herms: [ i686-linux, x86_64-linux, x86_64-darwin ] herringbone-embed: [ i686-linux, x86_64-linux, x86_64-darwin ] herringbone-wai: [ i686-linux, x86_64-linux, x86_64-darwin ] herringbone: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -5607,6 +5637,7 @@ dont-distribute-packages: hexquote: [ i686-linux, x86_64-linux, x86_64-darwin ] hext: [ i686-linux, x86_64-linux, x86_64-darwin ] heyefi: [ i686-linux, x86_64-linux, x86_64-darwin ] + heyting-algebras: [ i686-linux, x86_64-linux, x86_64-darwin ] hF2: [ i686-linux, x86_64-linux, x86_64-darwin ] hfann: [ i686-linux, x86_64-linux, x86_64-darwin ] hfd: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -5916,6 +5947,7 @@ dont-distribute-packages: hsbencher-codespeed: [ i686-linux, x86_64-linux, x86_64-darwin ] hsbencher-fusion: [ i686-linux, x86_64-linux, x86_64-darwin ] hsbencher: [ i686-linux, x86_64-linux, x86_64-darwin ] + hsc2hs: [ i686-linux, x86_64-linux, x86_64-darwin ] hsc3-auditor: [ i686-linux, x86_64-linux, x86_64-darwin ] hsc3-cairo: [ i686-linux, x86_64-linux, x86_64-darwin ] hsc3-data: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -6494,6 +6526,8 @@ dont-distribute-packages: KiCS-prophecy: [ i686-linux, x86_64-linux, x86_64-darwin ] KiCS: [ i686-linux, x86_64-linux, x86_64-darwin ] kif-parser: [ i686-linux, x86_64-linux, x86_64-darwin ] + kind-apply: [ i686-linux, x86_64-linux, x86_64-darwin ] + kind-generics: [ i686-linux, x86_64-linux, x86_64-darwin ] kit: [ i686-linux, x86_64-linux, x86_64-darwin ] kmeans-par: [ i686-linux, x86_64-linux, x86_64-darwin ] kmeans-vector: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -6645,6 +6679,7 @@ dont-distribute-packages: lens-time: [ i686-linux, x86_64-linux, x86_64-darwin ] lens-toml-parser: [ i686-linux, x86_64-linux, x86_64-darwin ] lens-tutorial: [ i686-linux, x86_64-linux, x86_64-darwin ] + lens-typelevel: [ i686-linux, x86_64-linux, x86_64-darwin ] lensref: [ i686-linux, x86_64-linux, x86_64-darwin ] level-monad: [ i686-linux, x86_64-linux, x86_64-darwin ] Level0: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -6687,6 +6722,7 @@ dont-distribute-packages: life-sync: [ i686-linux, x86_64-linux, x86_64-darwin ] lifted-base-tf: [ i686-linux, x86_64-linux, x86_64-darwin ] lifted-protolude: [ i686-linux, x86_64-linux, x86_64-darwin ] + lifted-stm: [ i686-linux, x86_64-linux, x86_64-darwin ] lifter: [ i686-linux, x86_64-linux, x86_64-darwin ] ligature: [ i686-linux, x86_64-linux, x86_64-darwin ] lightning-haskell: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -6988,6 +7024,8 @@ dont-distribute-packages: MetaHDBC: [ i686-linux, x86_64-linux, x86_64-darwin ] MetaObject: [ i686-linux, x86_64-linux, x86_64-darwin ] metaplug: [ i686-linux, x86_64-linux, x86_64-darwin ] + metar-http: [ i686-linux, x86_64-linux, x86_64-darwin ] + metar: [ i686-linux, x86_64-linux, x86_64-darwin ] metric: [ i686-linux, x86_64-linux, x86_64-darwin ] Metrics: [ i686-linux, x86_64-linux, x86_64-darwin ] metricsd-client: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -7127,6 +7165,7 @@ dont-distribute-packages: monoid-subclasses: [ i686-linux, x86_64-linux, x86_64-darwin ] monoidplus: [ i686-linux, x86_64-linux, x86_64-darwin ] monoids: [ i686-linux, x86_64-linux, x86_64-darwin ] + monopati: [ i686-linux, x86_64-linux, x86_64-darwin ] monte-carlo: [ i686-linux, x86_64-linux, x86_64-darwin ] monzo: [ i686-linux, x86_64-linux, x86_64-darwin ] moo: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -7146,6 +7185,7 @@ dont-distribute-packages: mp3decoder: [ i686-linux, x86_64-linux, x86_64-darwin ] mp: [ i686-linux, x86_64-linux, x86_64-darwin ] mpdmate: [ i686-linux, x86_64-linux, x86_64-darwin ] + mpi-hs: [ i686-linux, x86_64-linux, x86_64-darwin ] mpppc: [ i686-linux, x86_64-linux, x86_64-darwin ] mpretty: [ i686-linux, x86_64-linux, x86_64-darwin ] mpris: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -7665,6 +7705,7 @@ dont-distribute-packages: persistent-qq: [ i686-linux, x86_64-linux, x86_64-darwin ] persistent-ratelimit: [ i686-linux, x86_64-linux, x86_64-darwin ] persistent-relational-record: [ i686-linux, x86_64-linux, x86_64-darwin ] + persistent-template-classy: [ i686-linux, x86_64-linux, x86_64-darwin ] persistent-vector: [ i686-linux, x86_64-linux, x86_64-darwin ] persistent-zookeeper: [ i686-linux, x86_64-linux, x86_64-darwin ] persona-idp: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -7748,6 +7789,7 @@ dont-distribute-packages: plan-b: [ i686-linux, x86_64-linux, x86_64-darwin ] planar-graph: [ i686-linux, x86_64-linux, x86_64-darwin ] planb-token-introspection: [ i686-linux, x86_64-linux, x86_64-darwin ] + planet-mitchell-test: [ i686-linux, x86_64-linux, x86_64-darwin ] planet-mitchell: [ i686-linux, x86_64-linux, x86_64-darwin ] plankton: [ i686-linux, x86_64-linux, x86_64-darwin ] plat: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -8334,6 +8376,7 @@ dont-distribute-packages: rosmsg-bin: [ i686-linux, x86_64-linux, x86_64-darwin ] rosmsg: [ i686-linux, x86_64-linux, x86_64-darwin ] rosso: [ i686-linux, x86_64-linux, x86_64-darwin ] + rounded: [ i686-linux, x86_64-linux, x86_64-darwin ] rounding: [ i686-linux, x86_64-linux, x86_64-darwin ] roundtrip-aeson: [ i686-linux, x86_64-linux, x86_64-darwin ] roundtrip-string: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -8536,6 +8579,7 @@ dont-distribute-packages: servant-github: [ i686-linux, x86_64-linux, x86_64-darwin ] servant-haxl-client: [ i686-linux, x86_64-linux, x86_64-darwin ] servant-hmac-auth: [ i686-linux, x86_64-linux, x86_64-darwin ] + servant-http2-client: [ i686-linux, x86_64-linux, x86_64-darwin ] servant-iCalendar: [ i686-linux, x86_64-linux, x86_64-darwin ] servant-jquery: [ i686-linux, x86_64-linux, x86_64-darwin ] servant-js: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -8555,6 +8599,8 @@ dont-distribute-packages: servant-snap: [ i686-linux, x86_64-linux, x86_64-darwin ] servant-streaming-client: [ i686-linux, x86_64-linux, x86_64-darwin ] servant-subscriber: [ i686-linux, x86_64-linux, x86_64-darwin ] + servant-swagger-ui-jensoleg: [ i686-linux, x86_64-linux, x86_64-darwin ] + servant-swagger-ui-redoc: [ i686-linux, x86_64-linux, x86_64-darwin ] servant-xml: [ i686-linux, x86_64-linux, x86_64-darwin ] servant-zeppelin-client: [ i686-linux, x86_64-linux, x86_64-darwin ] servant-zeppelin-server: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -8603,6 +8649,7 @@ dont-distribute-packages: shaker: [ i686-linux, x86_64-linux, x86_64-darwin ] shakespeare-babel: [ i686-linux, x86_64-linux, x86_64-darwin ] shakespeare-sass: [ i686-linux, x86_64-linux, x86_64-darwin ] + shannon-fano: [ i686-linux, x86_64-linux, x86_64-darwin ] shapely-data: [ i686-linux, x86_64-linux, x86_64-darwin ] shapes-demo: [ i686-linux, x86_64-linux, x86_64-darwin ] shared-buffer: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -8621,6 +8668,7 @@ dont-distribute-packages: shellish: [ i686-linux, x86_64-linux, x86_64-darwin ] shellmate-extras: [ i686-linux, x86_64-linux, x86_64-darwin ] shellmate: [ i686-linux, x86_64-linux, x86_64-darwin ] + shh: [ i686-linux, x86_64-linux, x86_64-darwin ] shikensu: [ i686-linux, x86_64-linux, x86_64-darwin ] shivers-cfg: [ i686-linux, x86_64-linux, x86_64-darwin ] shoap: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -8641,6 +8689,7 @@ dont-distribute-packages: simd: [ i686-linux, x86_64-linux, x86_64-darwin ] simgi: [ i686-linux, x86_64-linux, x86_64-darwin ] simple-actors: [ i686-linux, x86_64-linux, x86_64-darwin ] + simple-affine-space: [ i686-linux, x86_64-linux, x86_64-darwin ] simple-atom: [ i686-linux, x86_64-linux, x86_64-darwin ] simple-bluetooth: [ i686-linux, x86_64-linux, x86_64-darwin ] simple-c-value: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -8877,6 +8926,7 @@ dont-distribute-packages: spoonutil: [ i686-linux, x86_64-linux, x86_64-darwin ] spoty: [ i686-linux, x86_64-linux, x86_64-darwin ] Sprig: [ i686-linux, x86_64-linux, x86_64-darwin ] + sprinkles: [ i686-linux, x86_64-linux, x86_64-darwin ] spritz: [ i686-linux, x86_64-linux, x86_64-darwin ] spsa: [ i686-linux, x86_64-linux, x86_64-darwin ] spy: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -8901,6 +8951,7 @@ dont-distribute-packages: sssp: [ i686-linux, x86_64-linux, x86_64-darwin ] sstable: [ i686-linux, x86_64-linux, x86_64-darwin ] SSTG: [ i686-linux, x86_64-linux, x86_64-darwin ] + st2: [ i686-linux, x86_64-linux, x86_64-darwin ] stable-heap: [ i686-linux, x86_64-linux, x86_64-darwin ] stable-maps: [ i686-linux, x86_64-linux, x86_64-darwin ] stable-marriage: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -8946,6 +8997,7 @@ dont-distribute-packages: stats: [ i686-linux, x86_64-linux, x86_64-darwin ] statsd-client: [ i686-linux, x86_64-linux, x86_64-darwin ] statsd: [ i686-linux, x86_64-linux, x86_64-darwin ] + statsdi: [ i686-linux, x86_64-linux, x86_64-darwin ] stb-image-redux: [ i686-linux, x86_64-linux, x86_64-darwin ] stb-truetype: [ i686-linux, x86_64-linux, x86_64-darwin ] stdata: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -9690,6 +9742,7 @@ dont-distribute-packages: visualize-cbn: [ i686-linux, x86_64-linux, x86_64-darwin ] vk-aws-route53: [ i686-linux, x86_64-linux, x86_64-darwin ] VKHS: [ i686-linux, x86_64-linux, x86_64-darwin ] + voicebase: [ i686-linux, x86_64-linux, x86_64-darwin ] vorbiscomment: [ i686-linux, x86_64-linux, x86_64-darwin ] vowpal-utils: [ i686-linux, x86_64-linux, x86_64-darwin ] voyeur: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -9701,6 +9754,7 @@ dont-distribute-packages: vty-menu: [ i686-linux, x86_64-linux, x86_64-darwin ] vty-ui-extras: [ i686-linux, x86_64-linux, x86_64-darwin ] vty-ui: [ i686-linux, x86_64-linux, x86_64-darwin ] + waargonaut: [ i686-linux, x86_64-linux, x86_64-darwin ] wacom-daemon: [ i686-linux, x86_64-linux, x86_64-darwin ] waddle: [ i686-linux, x86_64-linux, x86_64-darwin ] wahsp: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -9818,6 +9872,7 @@ dont-distribute-packages: winio: [ i686-linux, x86_64-linux, x86_64-darwin ] wire-streams: [ i686-linux, x86_64-linux, x86_64-darwin ] wiring: [ i686-linux, x86_64-linux, x86_64-darwin ] + witty: [ i686-linux, x86_64-linux, x86_64-darwin ] wkt-geom: [ i686-linux, x86_64-linux, x86_64-darwin ] wkt: [ i686-linux, x86_64-linux, x86_64-darwin ] wl-pprint-ansiterm: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -9877,6 +9932,7 @@ dont-distribute-packages: X11-rm: [ i686-linux, x86_64-linux, x86_64-darwin ] X11-xdamage: [ i686-linux, x86_64-linux, x86_64-darwin ] X11-xfixes: [ i686-linux, x86_64-linux, x86_64-darwin ] + x509-util: [ i686-linux, x86_64-linux, x86_64-darwin ] x86-64bit: [ i686-linux, x86_64-linux, x86_64-darwin ] xcb-types: [ i686-linux, x86_64-linux, x86_64-darwin ] xcffib: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -9968,10 +10024,15 @@ dont-distribute-packages: yaml-rpc: [ i686-linux, x86_64-linux, x86_64-darwin ] yaml2owl: [ i686-linux, x86_64-linux, x86_64-darwin ] yamlkeysdiff: [ i686-linux, x86_64-linux, x86_64-darwin ] + yampa-canvas: [ i686-linux, x86_64-linux, x86_64-darwin ] yampa-glfw: [ i686-linux, x86_64-linux, x86_64-darwin ] + yampa-gloss: [ i686-linux, x86_64-linux, x86_64-darwin ] yampa-glut: [ i686-linux, x86_64-linux, x86_64-darwin ] yampa-sdl2: [ i686-linux, x86_64-linux, x86_64-darwin ] + yampa-test: [ i686-linux, x86_64-linux, x86_64-darwin ] yampa2048: [ i686-linux, x86_64-linux, x86_64-darwin ] + Yampa: [ i686-linux, x86_64-linux, x86_64-darwin ] + YampaSynth: [ i686-linux, x86_64-linux, x86_64-darwin ] yandex-translate: [ i686-linux, x86_64-linux, x86_64-darwin ] yaop: [ i686-linux, x86_64-linux, x86_64-darwin ] yap: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -10072,6 +10133,7 @@ dont-distribute-packages: yjftp: [ i686-linux, x86_64-linux, x86_64-darwin ] yjsvg: [ i686-linux, x86_64-linux, x86_64-darwin ] yoctoparsec: [ i686-linux, x86_64-linux, x86_64-darwin ] + yoda: [ i686-linux, x86_64-linux, x86_64-darwin ] yoga: [ i686-linux, x86_64-linux, x86_64-darwin ] Yogurt-Standalone: [ i686-linux, x86_64-linux, x86_64-darwin ] Yogurt: [ i686-linux, x86_64-linux, x86_64-darwin ] diff --git a/pkgs/development/haskell-modules/configuration-halvm-2.4.0.nix b/pkgs/development/haskell-modules/configuration-halvm-2.4.0.nix deleted file mode 100644 index be90794f58d96de0b9b64fba9f54cd1681311e59..0000000000000000000000000000000000000000 --- a/pkgs/development/haskell-modules/configuration-halvm-2.4.0.nix +++ /dev/null @@ -1,59 +0,0 @@ -{ pkgs, haskellLib }: - -with haskellLib; - -self: super: { - - # Suitable LLVM version. - llvmPackages = pkgs.llvmPackages_35; - - # Disable GHC 8.0.x core libraries. - array = null; - base = null; - binary = null; - bytestring = null; - Cabal = null; - containers = null; - deepseq = null; - directory = null; - filepath = null; - ghc-boot = null; - ghc-boot-th = null; - ghc-prim = null; - ghci = null; - haskeline = null; - hoopl = null; - hpc = null; - integer-gmp = null; - pretty = null; - process = null; - rts = null; - template-haskell = null; - terminfo = null; - time = null; - transformers = null; - unix = null; - xhtml = null; - - # cabal-install can use the native Cabal library. - cabal-install = super.cabal-install.override { Cabal = null; }; - - # jailbreak-cabal can use the native Cabal library. - jailbreak-cabal = super.jailbreak-cabal.override { Cabal = null; }; - - # https://github.com/bmillwood/applicative-quoters/issues/6 - applicative-quoters = appendPatch super.applicative-quoters (pkgs.fetchpatch { - url = "https://patch-diff.githubusercontent.com/raw/bmillwood/applicative-quoters/pull/7.patch"; - sha256 = "026vv2k3ks73jngwifszv8l59clg88pcdr4mz0wr0gamivkfa1zy"; - }); - - # https://github.com/christian-marie/xxhash/issues/3 - xxhash = doJailbreak super.xxhash; - - # https://github.com/Deewiant/glob/issues/8 - Glob = doJailbreak super.Glob; - - # http://hub.darcs.net/dolio/vector-algorithms/issue/9#comment-20170112T145715 - vector-algorithms = dontCheck super.vector-algorithms; - -} diff --git a/pkgs/development/haskell-modules/generic-builder.nix b/pkgs/development/haskell-modules/generic-builder.nix index 8f230c92aaa17b7c0c1ab3b725d43cd24ab2087b..a0bf655a67b7dc6b30829d5652def912120dc0eb 100644 --- a/pkgs/development/haskell-modules/generic-builder.nix +++ b/pkgs/development/haskell-modules/generic-builder.nix @@ -443,6 +443,7 @@ stdenv.mkDerivation ({ env = shellFor { packages = p: [ drv ]; + inherit shellHook; }; }; diff --git a/pkgs/development/haskell-modules/hackage-packages.nix b/pkgs/development/haskell-modules/hackage-packages.nix index fe488d0447e181e9cf216dd410b0d813b0bfbdde..5590a48dfeba211a5539cf2335a918dfc9d8b887 100644 --- a/pkgs/development/haskell-modules/hackage-packages.nix +++ b/pkgs/development/haskell-modules/hackage-packages.nix @@ -725,7 +725,7 @@ self: { "Agda" = callPackage ({ mkDerivation, alex, array, async, base, binary, blaze-html - , boxes, bytestring, Cabal, containers, cpphs, data-hash, deepseq + , boxes, bytestring, Cabal, containers, data-hash, deepseq , directory, EdisonCore, edit-distance, emacs, equivalence , filemanip, filepath, geniplate-mirror, gitrev, happy, hashable , hashtables, haskeline, ieee754, mtl, murmur-hash, pretty, process @@ -734,8 +734,8 @@ self: { }: mkDerivation { pname = "Agda"; - version = "2.5.4.1"; - sha256 = "0bxpibsk98n9xp42d92ma5vj2fam8rsnl61fbhr3askfjdvalnbp"; + version = "2.5.4.2"; + sha256 = "07wvawpfjhx3gw2w53v27ncv1bl0kkx08wkm6wzxldbslkcasign"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; @@ -748,7 +748,7 @@ self: { template-haskell text time transformers unordered-containers uri-encode zlib ]; - libraryToolDepends = [ alex cpphs happy ]; + libraryToolDepends = [ alex happy ]; executableHaskellDepends = [ base directory filepath process ]; executableToolDepends = [ emacs ]; postInstall = '' @@ -1185,8 +1185,8 @@ self: { }: mkDerivation { pname = "BNFC"; - version = "2.8.1"; - sha256 = "082r1arj76563q1grc9ivpzfip8ghdffm87fj4q830s40dffl6rc"; + version = "2.8.2"; + sha256 = "1n4zgm6gls6lpasn8y5hy0m75qkkbk6mj18g2yhjrw8514a5860h"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ array base ]; @@ -8622,6 +8622,39 @@ self: { license = stdenv.lib.licenses.lgpl21; }) {}; + "HTF_0_13_2_5" = callPackage + ({ mkDerivation, aeson, aeson-pretty, array, base + , base64-bytestring, bytestring, containers, cpphs, Diff, directory + , filepath, haskell-src, HUnit, lifted-base, monad-control, mtl + , old-time, pretty, process, QuickCheck, random, regex-compat + , template-haskell, temporary, text, time, unix + , unordered-containers, vector, xmlgen + }: + mkDerivation { + pname = "HTF"; + version = "0.13.2.5"; + sha256 = "1kmf95y4vijdiih27xa35acl02dsxqnd9qa56z1waki5qqiz6nin"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + aeson array base base64-bytestring bytestring containers cpphs Diff + directory haskell-src HUnit lifted-base monad-control mtl old-time + pretty process QuickCheck random regex-compat text time unix vector + xmlgen + ]; + executableHaskellDepends = [ + array base cpphs directory HUnit mtl old-time random text + ]; + testHaskellDepends = [ + aeson aeson-pretty base bytestring directory filepath HUnit mtl + process random regex-compat template-haskell temporary text + unordered-containers + ]; + description = "The Haskell Test Framework"; + license = stdenv.lib.licenses.lgpl21; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "HTTP" = callPackage ({ mkDerivation, array, base, bytestring, case-insensitive, conduit , conduit-extra, deepseq, http-types, httpd-shed, HUnit, mtl @@ -8951,10 +8984,8 @@ self: { }: mkDerivation { pname = "HaXml"; - version = "1.25.4"; - sha256 = "1d8xq37h627im5harybhsn08qjdaf6vskldm03cqbfjmr2w6fx6p"; - revision = "1"; - editedCabalFile = "1vnil3xdyhr48f0nxcaljbl1k5ibg5g5gghvrhykg447b0jvp922"; + version = "1.25.5"; + sha256 = "0d8jbiv53r3ndg76r3937idqdg34nhmb99vj087i73hjnv21mifb"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -10226,8 +10257,8 @@ self: { ({ mkDerivation, base, mtl, QuickCheck, Stream }: mkDerivation { pname = "IOSpec"; - version = "0.3"; - sha256 = "0dwl2nx8fisl1syggwd3060wa50lj5nl9312x4q7pq153cxjppyy"; + version = "0.3.1"; + sha256 = "1xfhsj8r2gf9wynsihls255qqwqj8vrjyn56rk60xvm27ya4f1d3"; libraryHaskellDepends = [ base mtl QuickCheck Stream ]; description = "A pure specification of the IO monad"; license = stdenv.lib.licenses.bsd3; @@ -12274,10 +12305,8 @@ self: { }: mkDerivation { pname = "MiniAgda"; - version = "0.2017.2.18"; - sha256 = "0s3xp18y4kcjd1qq87vbhijbbpi9d1p08dgxw7521xlr3gmxkqxw"; - revision = "1"; - editedCabalFile = "0n4sd1b0c9fmgn7xqbhbms6y3ffkdgpa4fw7xcx31vgql2adxb0n"; + version = "0.2018.11.6"; + sha256 = "0zv8n80qmdykj40nqbrxb29grmy4kzjfhjxbyy3d7ylb64rq514n"; isLibrary = false; isExecutable = true; enableSeparateDataOutput = true; @@ -12290,6 +12319,32 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "MissingH_1_4_0_1" = callPackage + ({ mkDerivation, array, base, containers, directory + , errorcall-eq-instance, filepath, hslogger, HUnit, mtl, network + , old-locale, old-time, parsec, process, QuickCheck, random + , regex-compat, testpack, time, unix + }: + mkDerivation { + pname = "MissingH"; + version = "1.4.0.1"; + sha256 = "0wcvgrmav480w7nf4bl14yi0jq2yzanysxwzwas9hpb28vyjlgr8"; + revision = "1"; + editedCabalFile = "04syc14nz11fay6fm6nlixyflrfhpg4jiyxx6mnxrl6asd3cl989"; + libraryHaskellDepends = [ + array base containers directory filepath hslogger HUnit mtl network + old-locale old-time parsec process random regex-compat time unix + ]; + testHaskellDepends = [ + array base containers directory errorcall-eq-instance filepath + hslogger HUnit mtl network old-locale old-time parsec process + QuickCheck random regex-compat testpack time unix + ]; + description = "Large utility library"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "MissingH" = callPackage ({ mkDerivation, array, base, containers, directory , errorcall-eq-instance, filepath, hslogger, HUnit, mtl, network @@ -15071,12 +15126,12 @@ self: { }) {}; "QuickCheck-safe" = callPackage - ({ mkDerivation, base, QuickCheck }: + ({ mkDerivation, base, containers, QuickCheck }: mkDerivation { pname = "QuickCheck-safe"; - version = "0.1.0.4"; - sha256 = "0ixizi0cshqqczm86rnibas8zygf8i29l3i0jivvb81zi89rscl7"; - libraryHaskellDepends = [ base QuickCheck ]; + version = "0.1.0.5"; + sha256 = "0l8wp2np4mlbybzwcz8g4r9d8c65yljnvizs3g1rvig4b65j283l"; + libraryHaskellDepends = [ base containers QuickCheck ]; description = "Safe reimplementation of QuickCheck's core"; license = stdenv.lib.licenses.mit; }) {}; @@ -17234,6 +17289,8 @@ self: { pname = "Stack"; version = "0.3.2"; sha256 = "1rap4xyldzwj26r8mbvzkyy9021q8h06pz8cyd061vyslrl7p89b"; + revision = "1"; + editedCabalFile = "1ngyrylqmc2fc088d49pn41nlps3mqjimh0y8wc6nmpkay5pj0m8"; libraryHaskellDepends = [ base nats stm ]; description = "Stack data structure"; license = stdenv.lib.licenses.bsd3; @@ -18249,6 +18306,18 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "TypeCompose_0_9_14" = callPackage + ({ mkDerivation, base, base-orphans }: + mkDerivation { + pname = "TypeCompose"; + version = "0.9.14"; + sha256 = "0msss17lrya6y5xfvxl41xsqs6yr09iw6m1px4xlwin72xwly0sn"; + libraryHaskellDepends = [ base base-orphans ]; + description = "Type composition classes & instances"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "TypeIlluminator" = callPackage ({ mkDerivation, base, haskell98 }: mkDerivation { @@ -18650,8 +18719,8 @@ self: { }: mkDerivation { pname = "Villefort"; - version = "0.1.2.16"; - sha256 = "00ngq1i7f1sqksfl9cg1qzhp4fxv9h6mmjfljj3cahcw50h4al64"; + version = "0.1.2.17"; + sha256 = "17ga54kclbcr6vpiy6q5yws9535j9sg6isqggx05kz3hsa7nllbz"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; @@ -19605,17 +19674,20 @@ self: { }) {}; "Yampa" = callPackage - ({ mkDerivation, base, deepseq, random }: + ({ mkDerivation, base, deepseq, random, simple-affine-space }: mkDerivation { pname = "Yampa"; - version = "0.12"; - sha256 = "077fnazzcv7gckpklmdgk4hz6nnfnims11c1r4dwpnb0z6n31wcg"; + version = "0.13"; + sha256 = "1rxy8vky3wmqn4awr6v7r40ghk6nr27y11jnzbkj1bdp1948irc0"; isLibrary = true; isExecutable = true; - libraryHaskellDepends = [ base deepseq random ]; + libraryHaskellDepends = [ + base deepseq random simple-affine-space + ]; testHaskellDepends = [ base ]; - description = "Library for programming hybrid systems"; + description = "Elegant Functional Reactive Programming Language for Hybrid Systems"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "Yampa-core" = callPackage @@ -19647,6 +19719,7 @@ self: { ]; description = "Software synthesizer"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "Yocto" = callPackage @@ -20392,6 +20465,8 @@ self: { pname = "accelerate-llvm-ptx"; version = "1.2.0.0"; sha256 = "1rh0kq10mwn4zd8f5sp19pah2hmmcansaqqssz79183znzfiviz5"; + revision = "1"; + editedCabalFile = "1fcgs1wcknqnj7wr907ixwlrzwgfnl1bmyr5j4d58bm2xrspid7m"; libraryHaskellDepends = [ accelerate accelerate-llvm base bytestring containers cuda deepseq directory dlist file-embed filepath hashable llvm-hs llvm-hs-pure @@ -22167,8 +22242,8 @@ self: { }: mkDerivation { pname = "aeson-schema"; - version = "0.4.1.2"; - sha256 = "1afw0kf39myh4yqkkz8z1a7ji02j2iy7j66ch06pglvp5hzyi9dk"; + version = "0.4.1.3"; + sha256 = "17w0hih9l7x9r14s2mxywjzysm00f6bz6rqsgknvv9injakpscn3"; enableSeparateDataOutput = true; libraryHaskellDepends = [ aeson attoparsec base bytestring containers fail ghc-prim mtl @@ -26876,8 +26951,8 @@ self: { pname = "ansi-pretty"; version = "0.1.2.1"; sha256 = "1ill2dlzbxn97smkzdqcjfx9z3fw7pgwvz6w36d92n8p7zwik23h"; - revision = "5"; - editedCabalFile = "18vg7p8ymwk3kfhvg8cn8vq574x52n8a2c7ihrg4jg1gdsdrn0vi"; + revision = "6"; + editedCabalFile = "1j2iyzf61wmwdrb8i3xynins7shjv89y4028sy13rfywsbqpjg4s"; libraryHaskellDepends = [ aeson ansi-wl-pprint array base bytestring containers generics-sop nats scientific semigroups tagged text time unordered-containers @@ -26891,8 +26966,8 @@ self: { ({ mkDerivation, base, colour }: mkDerivation { pname = "ansi-terminal"; - version = "0.8.1"; - sha256 = "1fm489l5mnlyb6bidq7vxz5asvhshmxz38f0lijgj0z7yyzqpwwy"; + version = "0.8.2"; + sha256 = "147ss9wz03ww6ypbv6yh5vi1wfrfcaqm8r6nxh50vnp7254359wh"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ base colour ]; @@ -27055,8 +27130,8 @@ self: { }: mkDerivation { pname = "antiope-athena"; - version = "6.1.1"; - sha256 = "1scshv7whw3ylp9nq8zgz12rbkvwq6hmcwn04s8h7ygnb9k3zy21"; + version = "6.1.3"; + sha256 = "00n1yj3qjlcbqjb1288h74nmlhk2851mmpkrlni48ja6hy3pnacc"; libraryHaskellDepends = [ amazonka amazonka-athena amazonka-core base lens resourcet text unliftio-core @@ -27072,8 +27147,8 @@ self: { ({ mkDerivation, aeson, antiope-s3, avro, base, bytestring, text }: mkDerivation { pname = "antiope-contract"; - version = "6.1.1"; - sha256 = "14nvb786w4cqam3nd3wjfr7m0ysbr07vjm0ivwsxyvda3mwkn7pz"; + version = "6.1.3"; + sha256 = "0jazg8jh0wcv5gzz2sxhb5z3s50fz6x83siih9xs456kzsickh9a"; libraryHaskellDepends = [ aeson antiope-s3 avro base bytestring text ]; @@ -27088,8 +27163,8 @@ self: { }: mkDerivation { pname = "antiope-core"; - version = "6.1.1"; - sha256 = "0vmqyhxwfs45x3cqrlm1nij0cfnw2bk6sq3ldq6vrfpzm892g6py"; + version = "6.1.3"; + sha256 = "1qnbha6n0ax9gffa14dwgdklc8ilnxnccs60cfjfw8wjjfqm1wdc"; libraryHaskellDepends = [ amazonka amazonka-core base bytestring generic-lens http-client lens monad-logger mtl resourcet transformers unliftio-core @@ -27109,8 +27184,8 @@ self: { }: mkDerivation { pname = "antiope-dynamodb"; - version = "6.1.1"; - sha256 = "1kjsqka70bnkjzgdi427jqihlnm997ii147nzj8w04w5d6ynm2ly"; + version = "6.1.3"; + sha256 = "0l8arxlxy9bb5gqfn7jp4gcfzr3c2ncbcchk635g58ac0chzgaw4"; libraryHaskellDepends = [ amazonka amazonka-core amazonka-dynamodb antiope-core base generic-lens lens text unliftio-core unordered-containers @@ -27130,8 +27205,8 @@ self: { }: mkDerivation { pname = "antiope-messages"; - version = "6.1.1"; - sha256 = "0nklh0wi1y6drpm7i4ssjc8xx4b20knpnghn2yv839ph6w0f0r13"; + version = "6.1.3"; + sha256 = "0bk98ziv0ivwhbwd99pw54pf2788cva9bnqvv871wzxhqgd2vhx8"; libraryHaskellDepends = [ aeson amazonka amazonka-core amazonka-s3 amazonka-sqs antiope-s3 base generic-lens lens lens-aeson monad-loops network-uri text @@ -27148,25 +27223,25 @@ self: { "antiope-s3" = callPackage ({ mkDerivation, amazonka, amazonka-core, amazonka-s3, antiope-core - , base, bytestring, conduit, conduit-extra, exceptions + , attoparsec, base, bytestring, conduit, conduit-extra, exceptions , generic-lens, hedgehog, hspec, http-types, hw-hspec-hedgehog , lens, monad-logger, mtl, network-uri, resourcet, text , unliftio-core }: mkDerivation { pname = "antiope-s3"; - version = "6.1.1"; - sha256 = "0aq0qk377wvxm3kgy63zk382rnvjxx8csxj63vnmc5gikz5i2ya7"; + version = "6.1.3"; + sha256 = "167yc57r53yzfvyiz4z8kha820xfpwfa3mcb4kndlb650qa016ax"; libraryHaskellDepends = [ - amazonka amazonka-core amazonka-s3 antiope-core base bytestring - conduit conduit-extra exceptions generic-lens http-types lens - monad-logger mtl network-uri resourcet text unliftio-core + amazonka amazonka-core amazonka-s3 antiope-core attoparsec base + bytestring conduit conduit-extra exceptions generic-lens http-types + lens monad-logger mtl network-uri resourcet text unliftio-core ]; testHaskellDepends = [ - amazonka amazonka-core amazonka-s3 antiope-core base bytestring - conduit conduit-extra exceptions generic-lens hedgehog hspec - http-types hw-hspec-hedgehog lens monad-logger mtl network-uri - resourcet text unliftio-core + amazonka amazonka-core amazonka-s3 antiope-core attoparsec base + bytestring conduit conduit-extra exceptions generic-lens hedgehog + hspec http-types hw-hspec-hedgehog lens monad-logger mtl + network-uri resourcet text unliftio-core ]; license = stdenv.lib.licenses.mit; hydraPlatforms = stdenv.lib.platforms.none; @@ -27178,8 +27253,8 @@ self: { }: mkDerivation { pname = "antiope-sns"; - version = "6.1.1"; - sha256 = "0jdlm3sl7w5cq2hpikm73763np56g16z48b34wavg9yblrdfvvn7"; + version = "6.1.3"; + sha256 = "1knxyvzr566qwaa6167w64v8rlnr89350cca46vcs50rcr7hdjpj"; libraryHaskellDepends = [ aeson amazonka amazonka-core amazonka-sns base generic-lens lens text unliftio-core @@ -27199,8 +27274,8 @@ self: { }: mkDerivation { pname = "antiope-sqs"; - version = "6.1.1"; - sha256 = "189wgl3qpmf4amgc571zv88zpdblaqcbcnw93a6lk6i7rzc6h40r"; + version = "6.1.3"; + sha256 = "0xzcmjaniqprs2qachjiqzm4cxhgw4l6w7vg7sfp0b0l3m4kz4hh"; libraryHaskellDepends = [ aeson amazonka amazonka-core amazonka-s3 amazonka-sqs antiope-messages antiope-s3 base generic-lens lens lens-aeson @@ -27299,8 +27374,8 @@ self: { }: mkDerivation { pname = "aos-signature"; - version = "0.1.0"; - sha256 = "1nyizswc7jc6hylb57nsmpqndvqm8mk1wi2fi1l1cqgbkisrxmy5"; + version = "0.1.1"; + sha256 = "1sm925sr3ifi44wp7ndgjwwk3d3xy75ai6kgll573ngdicy3b2n3"; libraryHaskellDepends = [ base bytestring cryptonite memory mtl protolude random ]; @@ -27331,7 +27406,7 @@ self: { description = "Bindings to libaosd, a library for Cairo-based on-screen displays"; license = stdenv.lib.licenses.bsd3; hydraPlatforms = stdenv.lib.platforms.none; - }) {libaosd = null;}; + }) {inherit (pkgs) libaosd;}; "ap-reflect" = callPackage ({ mkDerivation, base }: @@ -28145,6 +28220,38 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "apply-refact_0_6_0_0" = callPackage + ({ mkDerivation, base, containers, directory, filemanip, filepath + , ghc, ghc-exactprint, mtl, optparse-applicative, process, refact + , silently, syb, tasty, tasty-expected-failure, tasty-golden + , temporary, transformers, unix-compat + }: + mkDerivation { + pname = "apply-refact"; + version = "0.6.0.0"; + sha256 = "0p2mqgjcqr1zcmk8zgr0yq7g8z1agsa6l493lkj6g3ya9lyhxgig"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + base containers directory filemanip ghc ghc-exactprint mtl process + refact syb temporary transformers unix-compat + ]; + executableHaskellDepends = [ + base containers directory filemanip filepath ghc ghc-exactprint mtl + optparse-applicative process refact syb temporary transformers + unix-compat + ]; + testHaskellDepends = [ + base containers directory filemanip filepath ghc ghc-exactprint mtl + optparse-applicative process refact silently syb tasty + tasty-expected-failure tasty-golden temporary transformers + unix-compat + ]; + description = "Perform refactorings specified by the refact library"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "apportionment" = callPackage ({ mkDerivation, base, containers, utility-ht }: mkDerivation { @@ -28961,6 +29068,24 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "arraylist" = callPackage + ({ mkDerivation, base, hashable, initialize, MonadRandom, primitive + , smallcheck, tasty, tasty-smallcheck + }: + mkDerivation { + pname = "arraylist"; + version = "0.1.0.0"; + sha256 = "1swvn9k7j2pwcln4znzrszgwgdi4f26q9qlaz2fi8jixc089v91g"; + libraryHaskellDepends = [ base initialize primitive ]; + testHaskellDepends = [ + base hashable MonadRandom primitive smallcheck tasty + tasty-smallcheck + ]; + description = "Memory-efficient ArrayList implementation"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "arrow-extras" = callPackage ({ mkDerivation, base }: mkDerivation { @@ -29123,10 +29248,8 @@ self: { }: mkDerivation { pname = "ascii"; - version = "0.0.5.1"; - sha256 = "06z63pr5g1wcsyii3pr8svz23cl9n4srspbkvby595pxfcbzkirn"; - revision = "1"; - editedCabalFile = "1v8pgvhl47c4sf226pg175wydw5a60lssz0876haqkqm5h7bjm7g"; + version = "0.0.5.2"; + sha256 = "1kbf6iml4nvkzf78xqvxy67469vznd05ig8aprq7zx5vr9njliby"; libraryHaskellDepends = [ base blaze-builder bytestring case-insensitive hashable semigroups text @@ -29571,8 +29694,8 @@ self: { ({ mkDerivation, base, Cabal, directory, filepath }: mkDerivation { pname = "asset-bundle"; - version = "0.1.0.0"; - sha256 = "0fdl3dgnc5q9mv8w5g3qrhyprqhbyp4jrr5gimf9xzd67fwsnf86"; + version = "0.1.0.1"; + sha256 = "0wf0xnf4ljihzvbz8pkaiqwhvp00bwnyx0334s4757z6lsc2hsrw"; libraryHaskellDepends = [ base Cabal directory filepath ]; description = "A build-time Cabal library that bundles executables with assets"; license = stdenv.lib.licenses.bsd3; @@ -30270,6 +30393,25 @@ self: { license = stdenv.lib.licenses.mit; }) {}; + "atomic-write_0_2_0_6" = callPackage + ({ mkDerivation, base, bytestring, directory, filepath, hspec + , temporary, text, unix-compat + }: + mkDerivation { + pname = "atomic-write"; + version = "0.2.0.6"; + sha256 = "1xs3shwnlj8hmnm3q6jc8nv78z0481i5n4hrqqdmbpx8grvlnqyl"; + libraryHaskellDepends = [ + base bytestring directory filepath temporary text unix-compat + ]; + testHaskellDepends = [ + base bytestring filepath hspec temporary text unix-compat + ]; + description = "Atomically write to a file"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "atomo" = callPackage ({ mkDerivation, array, base, bytestring, containers, directory , filepath, hashable, haskeline, hint, mtl, parsec, pretty @@ -30348,16 +30490,16 @@ self: { "ats-pkg" = callPackage ({ mkDerivation, ansi-wl-pprint, base, binary, bytestring, bzlib - , Cabal, cli-setup, composition-prelude, containers, cpphs - , dependency, dhall, directory, file-embed, filemanip, filepath - , http-client, http-client-tls, lzma, microlens, mtl - , optparse-applicative, parallel-io, process, shake, shake-ats - , shake-c, shake-ext, tar, temporary, text, unix, zip-archive, zlib + , Cabal, cli-setup, composition-prelude, containers, dependency + , dhall, directory, file-embed, filemanip, filepath, http-client + , http-client-tls, lzma, microlens, mtl, optparse-applicative + , parallel-io, process, shake, shake-ats, shake-c, shake-ext, tar + , temporary, text, unix, zip-archive, zlib }: mkDerivation { pname = "ats-pkg"; - version = "3.2.2.3"; - sha256 = "111lwv4461ij5z8z9n0kyvqcrjk0x5yjajfc3wyc3lklgc6ccjva"; + version = "3.2.4.0"; + sha256 = "0pj7zyf38rbi48lh8jhcm54wrflkdyh1583d9h4iy9nj5apa85ip"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; @@ -30368,7 +30510,6 @@ self: { microlens mtl parallel-io process shake shake-ats shake-c shake-ext tar text unix zip-archive zlib ]; - libraryToolDepends = [ cpphs ]; executableHaskellDepends = [ base bytestring cli-setup dependency directory microlens optparse-applicative parallel-io shake shake-ats temporary text @@ -30785,15 +30926,15 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; - "attoparsec-uri_0_0_6" = callPackage + "attoparsec-uri_0_0_7" = callPackage ({ mkDerivation, attoparsec, attoparsec-ip, base, bytedump, ip , QuickCheck, quickcheck-instances, strict, tasty, tasty-quickcheck , text, vector }: mkDerivation { pname = "attoparsec-uri"; - version = "0.0.6"; - sha256 = "046aq5c56p51nxyrazv3sv7m49c214gc673cwyic75vfykgbk20b"; + version = "0.0.7"; + sha256 = "0p3j4m5ps4j8phm2c00rk6m06vidckf14fy50xgcq2zr8b1lk79n"; libraryHaskellDepends = [ attoparsec attoparsec-ip base bytedump ip QuickCheck quickcheck-instances strict text vector @@ -31381,20 +31522,18 @@ self: { "avers-server" = callPackage ({ mkDerivation, aeson, avers, avers-api, base, base64-bytestring , bytestring, bytestring-conversion, containers, cookie, cryptonite - , http-types, memory, mtl, resource-pool, rethinkdb-client-driver - , servant, servant-server, stm, text, time, transformers, wai - , wai-websockets, websockets + , http-types, memory, mtl, resource-pool, servant, servant-server + , stm, text, time, transformers, wai, wai-websockets, websockets }: mkDerivation { pname = "avers-server"; - version = "0.1.0"; - sha256 = "0m809p50l1bfhnmbwl3ncav8lz7xh38yakqa35z65afb6k1g900z"; + version = "0.1.0.1"; + sha256 = "13jic248m2307r84acv4b4xlh7pvx4kxm6gp0nhvz1ds0bbrdkdy"; libraryHaskellDepends = [ aeson avers avers-api base base64-bytestring bytestring bytestring-conversion containers cookie cryptonite http-types - memory mtl resource-pool rethinkdb-client-driver servant - servant-server stm text time transformers wai wai-websockets - websockets + memory mtl resource-pool servant servant-server stm text time + transformers wai wai-websockets websockets ]; description = "Server implementation of the Avers API"; license = stdenv.lib.licenses.mit; @@ -31483,7 +31622,7 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; - "avro_0_3_6_1" = callPackage + "avro_0_4_0_0" = callPackage ({ mkDerivation, aeson, array, base, base16-bytestring, binary , bytestring, containers, data-binary-ieee754, directory, entropy , extra, fail, hashable, hspec, lens, lens-aeson, mtl, pure-zlib @@ -31492,8 +31631,8 @@ self: { }: mkDerivation { pname = "avro"; - version = "0.3.6.1"; - sha256 = "0b1pj47nfpbqvcp5vzraa1przq1c9ll8n76qbyg05fjfvamycbq3"; + version = "0.4.0.0"; + sha256 = "1cly3x4lmibcjm5sz68s2fncakpx2cfvyimv4ck1mm5v94yfp8pi"; libraryHaskellDepends = [ aeson array base base16-bytestring binary bytestring containers data-binary-ieee754 entropy fail hashable mtl pure-zlib scientific @@ -31761,17 +31900,18 @@ self: { "aws-easy" = callPackage ({ mkDerivation, amazonka, amazonka-dynamodb, amazonka-s3, base - , bytestring, lens, resourcet, split, template-haskell, text - , unordered-containers + , bytestring, lens, monad-control, resourcet, split + , template-haskell, text, unordered-containers }: mkDerivation { pname = "aws-easy"; - version = "0.1.0.1"; - sha256 = "0sl3whg7x02c3cph5p72rlkycsr2m3ni0kad5rs0q644wgvhqvm5"; + version = "0.1.0.2"; + sha256 = "16a0dfgd6ggm5b4g75913b5pc0s5hdh7n1h3j22d4j50knd8j5r4"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ - amazonka base bytestring lens resourcet template-haskell + amazonka base bytestring lens monad-control resourcet + template-haskell ]; executableHaskellDepends = [ amazonka amazonka-dynamodb amazonka-s3 base lens split text @@ -32227,25 +32367,22 @@ self: { }: mkDerivation { pname = "axel"; - version = "0.0.6"; - sha256 = "17601gv4rjdxmg2qqp2y9b5lk9ia0z1izhympmwf6zs7wkjs6fyh"; - revision = "2"; - editedCabalFile = "12m24klalqxpglh9slhr65sxqd4dsqcaz2abmw29cki0cz6x29dp"; + version = "0.0.8"; + sha256 = "16fkrc87yirzha3fgdcbidi7k9xkmb5y5w1i4i10rlikhszfr2b9"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; libraryHaskellDepends = [ base bytestring directory filepath freer-simple haskell-src-exts lens lens-aeson optparse-applicative parsec process regex-pcre - singletons strict text typed-process vector yaml + singletons strict template-haskell text typed-process vector yaml ]; executableHaskellDepends = [ base freer-simple optparse-applicative ]; testHaskellDepends = [ base bytestring filepath freer-simple hedgehog lens split tasty - tasty-discover tasty-golden tasty-hedgehog tasty-hspec - template-haskell transformers + tasty-discover tasty-golden tasty-hedgehog tasty-hspec transformers ]; testToolDepends = [ tasty-discover ]; description = "The Axel programming language"; @@ -32327,6 +32464,24 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "azure-email" = callPackage + ({ mkDerivation, aeson, base, base64-bytestring, bytestring + , cryptonite, exceptions, http-client, http-client-tls, lens-aeson + , microlens, RSA, text, time, uuid, wreq + }: + mkDerivation { + pname = "azure-email"; + version = "0.1.0.0"; + sha256 = "108xfmq9mb8fxy06six0id7sf8rpazknqx4plk93fl34xyrwald5"; + libraryHaskellDepends = [ + aeson base base64-bytestring bytestring cryptonite exceptions + http-client http-client-tls lens-aeson microlens RSA text time uuid + wreq + ]; + description = "send email with microsoft azure"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "azure-service-api" = callPackage ({ mkDerivation, base, binary, bytestring, case-insensitive , certificate, crypto-pubkey-types, http-conduit, hxt, hxt-xpath @@ -32398,17 +32553,16 @@ self: { ({ mkDerivation, base, binary, bytestring, containers, criterion , directory, errors, exceptions, filepath, lens, mmap, mtl, pipes , pipes-interleave, QuickCheck, tasty, tasty-quickcheck - , transformers, vector + , transformers, vector, vector-binary-instances }: mkDerivation { pname = "b-tree"; - version = "0.1.3"; - sha256 = "0r1bgcjsykd9qzzr6chxw8bfnmvk32p9663j6h11wmq6nq7nrlkb"; - revision = "2"; - editedCabalFile = "04is4fc308f1achbdxvqq9rg4v8c02f1w88wysp318dbhhmwgggh"; + version = "0.1.4"; + sha256 = "17hcv85020dm5h3449bfa763bcbl723h17chah4418dby2ql5lxg"; libraryHaskellDepends = [ base binary bytestring containers directory errors exceptions filepath lens mmap mtl pipes pipes-interleave transformers vector + vector-binary-instances ]; testHaskellDepends = [ base binary containers pipes QuickCheck tasty tasty-quickcheck @@ -33046,6 +33200,7 @@ self: { doHaddock = false; description = "Helps migrating projects to base-compat(-batteries)"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "base-encoding" = callPackage @@ -33484,6 +33639,8 @@ self: { pname = "basic-sop"; version = "0.2.0.2"; sha256 = "0cd5zlv3w3r99ck5cz43kppand0n9vx26g4d4fqqcmvjxk8zwhy7"; + revision = "1"; + editedCabalFile = "0rvhcbywgpidnq1vg79a9scq6hraqdyv67j63vyidm0q20ml5mpv"; libraryHaskellDepends = [ base deepseq generics-sop QuickCheck text ]; @@ -33707,6 +33864,20 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "bazel-runfiles" = callPackage + ({ mkDerivation, base, directory, filepath }: + mkDerivation { + pname = "bazel-runfiles"; + version = "0.7.0.1"; + sha256 = "000awjykargiirnmb3nfqp8dk1p87f5aqx2d07nxrrgflxs7y8ad"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ base directory filepath ]; + executableHaskellDepends = [ base filepath ]; + description = "Locate Bazel runfiles location"; + license = stdenv.lib.licenses.asl20; + }) {}; + "bbdb" = callPackage ({ mkDerivation, base, hspec, parsec }: mkDerivation { @@ -34026,13 +34197,14 @@ self: { ({ mkDerivation, base, dunai, MonadRandom, mtl, transformers }: mkDerivation { pname = "bearriver"; - version = "0.10.4.3"; - sha256 = "0d8yhccsg66163cjkdccdjf26rkzv4i7fv454fj9vhylxcggzjin"; + version = "0.10.4.4"; + sha256 = "14aqp6jqca5b4z0bf5q18pq5l9q43bzz18zjwn3j0ns1fakrq5bb"; libraryHaskellDepends = [ base dunai MonadRandom mtl transformers ]; description = "A replacement of Yampa based on Monadic Stream Functions"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "beautifHOL" = callPackage @@ -34050,20 +34222,18 @@ self: { }) {}; "bed-and-breakfast" = callPackage - ({ mkDerivation, array, base, binary, deepseq, QuickCheck + ({ mkDerivation, array, base, binary, cpphs, deepseq, QuickCheck , template-haskell }: mkDerivation { pname = "bed-and-breakfast"; - version = "0.4.3"; - sha256 = "0183770vkb5r9srxqr3fa4s601g10bx07b05hjr3b3nvc0ab9f6z"; - revision = "1"; - editedCabalFile = "0kqdmq6y2fgbknx2lsn1jx2g2n7yizdpzn6wvnnvjaqi945yvyry"; + version = "0.5"; + sha256 = "0dj1vvb9j55psp6yra72wk0k3k6ggvarmzj7zjgr8z3npv5mqmar"; libraryHaskellDepends = [ - array base binary deepseq template-haskell + array base binary cpphs deepseq template-haskell ]; testHaskellDepends = [ base QuickCheck ]; - description = "Efficient Matrix operations in 100% Haskell"; + description = "Efficient Matrix and Vector operations in 100% Haskell"; license = stdenv.lib.licenses.mit; hydraPlatforms = stdenv.lib.platforms.none; }) {}; @@ -34186,8 +34356,8 @@ self: { }: mkDerivation { pname = "bench-show"; - version = "0.2.1"; - sha256 = "1afx5vck4b57r6kanr5g46rk5n8hf9vw4vg2sfqgdb3fhc9979g5"; + version = "0.2.2"; + sha256 = "12fi59j9a98n4q6gjvjsf0hjc2rsy33b7kzjiqxy5wzh8isciaa4"; libraryHaskellDepends = [ ansi-wl-pprint base Chart Chart-diagrams csv directory filepath mwc-random split statistics transformers vector @@ -34237,6 +34407,29 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "bencodex" = callPackage + ({ mkDerivation, attoparsec, base, base64-bytestring, bytestring + , containers, file-embed, filepath, hashable, hlint, hspec + , hspec-attoparsec, hspec-discover, HsYAML, text + , unordered-containers + }: + mkDerivation { + pname = "bencodex"; + version = "1.0.0"; + sha256 = "1ny60qg63kyi12rlk8spc6db40zq3laqfw0k89s0jvnkjlksdyj8"; + libraryHaskellDepends = [ + attoparsec base bytestring hashable text unordered-containers + ]; + testHaskellDepends = [ + base base64-bytestring bytestring containers file-embed filepath + hlint hspec hspec-attoparsec hspec-discover HsYAML text + unordered-containers + ]; + testToolDepends = [ hspec-discover ]; + description = "Bencodex reader/writer for Haskell"; + license = stdenv.lib.licenses.gpl3; + }) {}; + "bencoding" = callPackage ({ mkDerivation, AttoBencode, attoparsec, base, bencode, bytestring , containers, criterion, deepseq, ghc-prim, hspec, integer-gmp, mtl @@ -34499,6 +34692,8 @@ self: { pname = "bhoogle"; version = "0.1.3.5"; sha256 = "1gig9w1k1w2kw6y3wx6ckmc7kamwwzzq7mbaxil0rmb5ms0p1rf9"; + revision = "1"; + editedCabalFile = "006nqwl03lrs7nsly7l3kl9wfwabflkkxy4g34sbkik88ihipw56"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ @@ -35247,6 +35442,8 @@ self: { pname = "binary-tagged"; version = "0.1.5.1"; sha256 = "196msm7v0r41d7gx8aghl0c1gvir60sf0w9sfpcz2dq9akzqzjvh"; + revision = "1"; + editedCabalFile = "1z612d3wbrlywcx96lc52svi9b2s6nskdnwnwm3d5mylcqaqckcx"; libraryHaskellDepends = [ aeson array base base16-bytestring binary bytestring containers generics-sop hashable scientific SHA tagged text time @@ -37134,6 +37331,8 @@ self: { pname = "bitwise"; version = "1.0.0.1"; sha256 = "03xyzdkyb99gvm9g5chl07rqbnm7qrxba7wgmrfmal0rkwm0ibkn"; + revision = "1"; + editedCabalFile = "1h6dbjmznd3pvz7j5f8xwaaxxhx57fxszli2k430wcn65bc9y0zs"; libraryHaskellDepends = [ array base bytestring ]; testHaskellDepends = [ base QuickCheck ]; benchmarkHaskellDepends = [ array base bytestring criterion ]; @@ -37165,13 +37364,15 @@ self: { }) {}; "bizzlelude" = callPackage - ({ mkDerivation, base-noprelude, containers, directory, text }: + ({ mkDerivation, base-noprelude, containers, directory, regexpr + , text + }: mkDerivation { pname = "bizzlelude"; - version = "1.2.0"; - sha256 = "1yqp46blrllx5irn1vvvx1v2n06pdfdfmhcng8hvs7q43fcsfgcr"; + version = "1.5.0"; + sha256 = "1mjy5hlszj85wvxwr7fza5wa004xjcg434kwzxzjmmlcvkgh2ybr"; libraryHaskellDepends = [ - base-noprelude containers directory text + base-noprelude containers directory regexpr text ]; description = "A lousy Prelude replacement by a lousy dude"; license = stdenv.lib.licenses.bsd3; @@ -38777,8 +38978,8 @@ self: { pname = "boring"; version = "0.1"; sha256 = "0r263cc8bdwsaw33x96fgd8npsma9a2ffv6mfz9z72d7qclhimkk"; - revision = "1"; - editedCabalFile = "0hdvr4rkkj2mapqha335rhncfmrw70qzjmfis2w9l4iqx617fv9m"; + revision = "2"; + editedCabalFile = "1jxaby4cagbhii194x9x0j75ms1v5bm14sx7d19zz3844mh9qyci"; libraryHaskellDepends = [ adjunctions base base-compat constraints fin generics-sop streams tagged transformers transformers-compat vec @@ -39207,6 +39408,8 @@ self: { pname = "brick"; version = "0.41.2"; sha256 = "04b4gyzb0c66idl19k0v3g9z48bcii728ivbpvm8zjkzq2m2hqix"; + revision = "1"; + editedCabalFile = "00z07bkarxqv517aq95gib864z9mrq9j86zh6jdxybf2v4fwh04s"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -39741,14 +39944,14 @@ self: { "btree" = callPackage ({ mkDerivation, base, clock, containers, ghc-prim, hashable - , MonadRandom, primitive, smallcheck, tasty, tasty-hunit - , tasty-smallcheck, transformers + , initialize, MonadRandom, primitive, smallcheck, tasty + , tasty-hunit, tasty-smallcheck, transformers }: mkDerivation { pname = "btree"; - version = "0.3.1"; - sha256 = "071ghhjzg7c6m87nh2q53kqbff9hx782h6c1z5s9pwl2b7r8cc7g"; - libraryHaskellDepends = [ base ghc-prim primitive ]; + version = "0.4.0"; + sha256 = "04jbvd247i8bfplyljp5937fw9x85w4v613kpzyb15z7nw2xr8l9"; + libraryHaskellDepends = [ base ghc-prim initialize primitive ]; testHaskellDepends = [ base containers hashable MonadRandom primitive smallcheck tasty tasty-hunit tasty-smallcheck transformers @@ -39797,6 +40000,20 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "btrfs_0_2_0_0" = callPackage + ({ mkDerivation, base, bytestring, time, unix }: + mkDerivation { + pname = "btrfs"; + version = "0.2.0.0"; + sha256 = "1h56yb4a3i1c452splxj06c8harrcws2pg86rx7jz6b804ncrzr2"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ base bytestring time unix ]; + description = "Bindings to the btrfs API"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "buchhaltung" = callPackage ({ mkDerivation, aeson, ansi-wl-pprint, array, async, base, boxes , bytestring, cassava, containers, data-default, Decimal, deepseq @@ -39959,8 +40176,8 @@ self: { }: mkDerivation { pname = "bugsnag-haskell"; - version = "0.0.2.1"; - sha256 = "09vvckg6advf47ciq3cv2g06g13d2az1kinby5fpfz1wma7s1zjg"; + version = "0.0.2.2"; + sha256 = "1fx9f0ddx8il141rhqxb81vms0nxkyckwx72cmjq2j0nwjhhh89l"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -40365,19 +40582,18 @@ self: { "butterflies" = callPackage ({ mkDerivation, base, bytestring, gl-capture, GLUT, OpenGLRaw - , OpenGLRaw21, repa, repa-devil + , repa, repa-devil }: mkDerivation { pname = "butterflies"; - version = "0.3.0.1"; - sha256 = "0dgjjfd4lna6kvqbckx378ssxc5mm9xyvdkwd3r197199rmxq733"; + version = "0.3.0.2"; + sha256 = "0syykvrgq6i0zxy1pn934j1r9glv4yypva1mfkn0vc0nikh9fm31"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; libraryHaskellDepends = [ base ]; executableHaskellDepends = [ - base bytestring gl-capture GLUT OpenGLRaw OpenGLRaw21 repa - repa-devil + base bytestring gl-capture GLUT OpenGLRaw repa repa-devil ]; description = "butterfly tilings"; license = stdenv.lib.licenses.gpl3; @@ -41402,8 +41618,8 @@ self: { }: mkDerivation { pname = "cabal-debian"; - version = "4.38.1"; - sha256 = "1sniyy2pappjjhvw1bma593gxdcjlg3j2afx8jgb70h6cbl3769n"; + version = "4.38.2"; + sha256 = "1hr2y1jymi835pwm17z4fc0r58fkx3h8vxb03qp4fiadily0lg3s"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -41618,8 +41834,8 @@ self: { pname = "cabal-install"; version = "2.4.0.0"; sha256 = "1xmyl0x8wqfrnray6ky5wy0g0samv4264fbdlzxhqsvk9dbfja8k"; - revision = "1"; - editedCabalFile = "0cni9i6f6kbfl6f5gypb9ky94ib1w6d0nkd05j4lmrjadnxss49a"; + revision = "2"; + editedCabalFile = "1xil5pim6j1ckqj61zz6l7xpfxxr3rkw2hvpws2f7pr9shk645dl"; isLibrary = false; isExecutable = true; setupHaskellDepends = [ base Cabal filepath process ]; @@ -42016,10 +42232,8 @@ self: { ({ mkDerivation, base, Cabal, QuickCheck }: mkDerivation { pname = "cabal-test-quickcheck"; - version = "0.1.8.1"; - sha256 = "0r5fd670a5ch0lzw7wsxp6k06wzi64wvjbiy8zyfl7brmjnbh8gn"; - revision = "1"; - editedCabalFile = "1rq6l86sndcv8nb5nl9rki2kmblrarj9cbra0i6kixa5n1wbcmv6"; + version = "0.1.8.2"; + sha256 = "04fdfxvgp518x7n6d74l92qh67z94pay4wldy8dv4n51zhkgk8bf"; libraryHaskellDepends = [ base Cabal QuickCheck ]; description = "QuickCheck for Cabal"; license = stdenv.lib.licenses.mit; @@ -42509,10 +42723,8 @@ self: { }: mkDerivation { pname = "cacophony"; - version = "0.10.0"; - sha256 = "1hjxzpbnp5qzbjl9m0hyvlr7yflfgxr5kqbviamhpgc0lj5igizv"; - revision = "2"; - editedCabalFile = "0w7nq4c5i89vmslxhvzw8299gig2wrr0ayddqjk5dxghmmly3hdw"; + version = "0.10.1"; + sha256 = "1w9v04mdyzvwndqfb8my9a82b51avgwfnl6g7w89xj37ax9ariaj"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -42968,6 +43180,27 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "canonical-json" = callPackage + ({ mkDerivation, aeson, base, bytestring, containers, parsec + , pretty, QuickCheck, tasty, tasty-quickcheck, unordered-containers + , vector + }: + mkDerivation { + pname = "canonical-json"; + version = "0.5.0.1"; + sha256 = "1r52f69afsnl6kmn0h2rl6wp21jjain4kz6123a1haacfm2f2hwj"; + libraryHaskellDepends = [ + base bytestring containers parsec pretty + ]; + testHaskellDepends = [ + aeson base bytestring QuickCheck tasty tasty-quickcheck + unordered-containers vector + ]; + description = "Canonical JSON for signing and hashing JSON values"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "canteven-config" = callPackage ({ mkDerivation, base, unix, yaml }: mkDerivation { @@ -43179,6 +43412,8 @@ self: { pname = "capnp"; version = "0.3.0.0"; sha256 = "17i7m168bqp57m5lb04sbfh2amc1sicv2jajkl61jb1gsidwdkrz"; + revision = "1"; + editedCabalFile = "0faisbw98h1zjsqja57c0xac6hhnhb4sghzh9a3225pp8wxnbjr7"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -45462,6 +45697,26 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "cheapskate_0_1_1_1" = callPackage + ({ mkDerivation, base, blaze-html, bytestring, containers + , data-default, deepseq, mtl, syb, text, uniplate, xss-sanitize + }: + mkDerivation { + pname = "cheapskate"; + version = "0.1.1.1"; + sha256 = "0qnyd8bni2rby6b02ff4bvfdhm1hwc8vzpmnms84jgrlg1lly3fm"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + base blaze-html containers data-default deepseq mtl syb text + uniplate xss-sanitize + ]; + executableHaskellDepends = [ base blaze-html bytestring text ]; + description = "Experimental markdown processor"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "cheapskate-highlight" = callPackage ({ mkDerivation, base, blaze-html, cheapskate, highlighting-kate , text @@ -47213,8 +47468,8 @@ self: { }: mkDerivation { pname = "clckwrks"; - version = "0.24.0.7"; - sha256 = "1czalrr7y3526jb4cgi8bghxghqwsjwkfhm5vb4q19xzqg3kjqwy"; + version = "0.24.0.8"; + sha256 = "1csiak0i3aaz56f64509w49q4j21cb10zlxdx8lyhbm8aikva0n1"; enableSeparateDataOutput = true; setupHaskellDepends = [ base Cabal ]; libraryHaskellDepends = [ @@ -47385,8 +47640,8 @@ self: { }: mkDerivation { pname = "clckwrks-plugin-page"; - version = "0.4.3.12"; - sha256 = "0xndx7843laiha1n8xscq13dv6x6fv098v1cdmmzx7qnvfvhhlxj"; + version = "0.4.3.13"; + sha256 = "0fkfsi9hv0hv4zbv2znb0v30z5qvifgmz9875868va0830nv3ibh"; setupHaskellDepends = [ base Cabal ]; libraryHaskellDepends = [ acid-state aeson attoparsec base clckwrks containers directory @@ -47808,8 +48063,8 @@ self: { }: mkDerivation { pname = "cloben"; - version = "0.1.0.3"; - sha256 = "1nzks0p5p0a76jys5dza6iqp48kd1lgxla3k3dfd8znlg9nd7dy2"; + version = "0.1.1.0"; + sha256 = "14vkga43sm995rg4s4npjca7xslgs33kl1ivknbflfidvgpdlxmb"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ @@ -49568,19 +49823,23 @@ self: { }) {}; "combinat" = callPackage - ({ mkDerivation, array, base, containers, QuickCheck, random - , test-framework, test-framework-quickcheck2, transformers + ({ mkDerivation, array, base, containers, QuickCheck, random, tasty + , tasty-hunit, tasty-quickcheck, test-framework + , test-framework-quickcheck2, transformers }: mkDerivation { pname = "combinat"; - version = "0.2.8.2"; - sha256 = "0i7hk8518ixwxvxgy9xbf9hcyfpvmcfgz5m3wbxzcj5ry4rnnhnh"; + version = "0.2.9.0"; + sha256 = "1y617qyhqh2k6d51j94c0xnj54i7b86d87n0j12idxlkaiv4j5sw"; + revision = "1"; + editedCabalFile = "0yjvvxfmyzjhh0q050cc2wkhaahzixsw7hf27n8dky3n4cxd5bix"; libraryHaskellDepends = [ array base containers random transformers ]; testHaskellDepends = [ - array base containers QuickCheck random test-framework - test-framework-quickcheck2 transformers + array base containers QuickCheck random tasty tasty-hunit + tasty-quickcheck test-framework test-framework-quickcheck2 + transformers ]; description = "Generate and manipulate various combinatorial objects"; license = stdenv.lib.licenses.bsd3; @@ -49707,19 +49966,21 @@ self: { }) {}; "comfort-array" = callPackage - ({ mkDerivation, base, guarded-allocation, QuickCheck, transformers - , utility-ht + ({ mkDerivation, base, guarded-allocation, primitive, QuickCheck + , storable-record, transformers, utility-ht }: mkDerivation { pname = "comfort-array"; - version = "0.1.1"; - sha256 = "0kmqb7mcanx3n597nm8p6g76nc4v5smkl5srjmb2757fb3w68xmk"; + version = "0.1.2"; + sha256 = "1rc8gfgjid10wajjk5pp1vmm8wc2apr5qcr2w41pwk25m554iyz1"; libraryHaskellDepends = [ - base guarded-allocation QuickCheck transformers utility-ht + base guarded-allocation primitive QuickCheck storable-record + transformers utility-ht ]; testHaskellDepends = [ base QuickCheck ]; description = "Arrays where the index type is a function of the shape type"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "comfort-graph" = callPackage @@ -50169,8 +50430,8 @@ self: { }: mkDerivation { pname = "compdata-fixplate"; - version = "0.1.2"; - sha256 = "1ljnmwgjllpcrgibfxxb4zghfl76g7951i2r9haycpwmikz7dggz"; + version = "0.1.3"; + sha256 = "1b9xmp2lps9k9fvvpqlha0vkncs4pivixyyqs71zl4dxcrsa8ryx"; libraryHaskellDepends = [ base composition containers deriving-compat fixplate tree-view ]; @@ -50267,8 +50528,8 @@ self: { pname = "complex-generic"; version = "0.1.1.1"; sha256 = "03wb599difj0qm1dpzgxdymq3bql69qmkdk5fspcyc19nnd5qlqz"; - revision = "2"; - editedCabalFile = "160lw045p7j5vm4j2sqqfpnfgkxkil2kwjnmi7x6am03gfi9g9kw"; + revision = "3"; + editedCabalFile = "0vm0i25bib0bzlw7fw209pqn3963y5hx0vkri049q4v7y0qld8k9"; libraryHaskellDepends = [ base template-haskell ]; description = "complex numbers with non-mandatory RealFloat"; license = stdenv.lib.licenses.bsd3; @@ -50399,8 +50660,8 @@ self: { }: mkDerivation { pname = "composite-aeson"; - version = "0.5.4.0"; - sha256 = "08rmv82v5ipkcb46pcadx1s8c1v532l8ma2qlgiflq6jnxf7y0zn"; + version = "0.5.5.0"; + sha256 = "1hmhnkfmdjm5q8lkvlyr7rzs1lfycnblz3q2y8aziy27j7pvnz6h"; libraryHaskellDepends = [ aeson aeson-better-errors base composite-base containers contravariant generic-deriving hashable lens mmorph mtl profunctors @@ -50424,8 +50685,8 @@ self: { }: mkDerivation { pname = "composite-aeson-refined"; - version = "0.5.4.0"; - sha256 = "1x5vkxzj0afar4w2djx9s7h3vy9aa5my9wfks8n4ajlv92fch1zm"; + version = "0.5.5.0"; + sha256 = "0mm0dbsxqw5m78jgdn6vnbck2icqkzgwqyc3c3ghyz46cymd7pjz"; libraryHaskellDepends = [ aeson-better-errors base composite-aeson mtl refined ]; @@ -50437,19 +50698,20 @@ self: { "composite-base" = callPackage ({ mkDerivation, base, exceptions, hspec, lens, monad-control, mtl , profunctors, QuickCheck, template-haskell, text, transformers - , transformers-base, vinyl + , transformers-base, unliftio-core, vinyl }: mkDerivation { pname = "composite-base"; - version = "0.5.4.0"; - sha256 = "0brycxdwf4051qvad4b4ak47dl27qn3izv1bcqlpva01jvb6h21j"; + version = "0.5.5.0"; + sha256 = "0qlg979cwkdlfpcwh7r0qr9fjs525b3xly0invr358h2g1lgi0fm"; libraryHaskellDepends = [ base exceptions lens monad-control mtl profunctors template-haskell - text transformers transformers-base vinyl + text transformers transformers-base unliftio-core vinyl ]; testHaskellDepends = [ base exceptions hspec lens monad-control mtl profunctors QuickCheck - template-haskell text transformers transformers-base vinyl + template-haskell text transformers transformers-base unliftio-core + vinyl ]; description = "Shared utilities for composite-* packages"; license = stdenv.lib.licenses.bsd3; @@ -50461,8 +50723,8 @@ self: { }: mkDerivation { pname = "composite-ekg"; - version = "0.5.4.0"; - sha256 = "051dw8ncpsk2k05ipvlnkwv2gy6719w69v1hhwrryy3dad0f4wc3"; + version = "0.5.5.0"; + sha256 = "0bawdcx21dd0szxnnxs2iinzz6h4w2phk7mfs26fxiqx3f375lm4"; libraryHaskellDepends = [ base composite-base ekg-core lens text vinyl ]; @@ -50478,8 +50740,8 @@ self: { }: mkDerivation { pname = "composite-opaleye"; - version = "0.5.4.0"; - sha256 = "1k71v4dz4vl70ignjp6hgw6j4c9hdgafd9x973dk7w332m2vjdpn"; + version = "0.5.5.0"; + sha256 = "0s54g9c1lm3jrdj44cvzxgbfaf7l2fdq2yy25vhqdmww50h8q1cx"; libraryHaskellDepends = [ base bytestring composite-base lens opaleye postgresql-simple product-profunctors profunctors template-haskell text vinyl @@ -50501,8 +50763,8 @@ self: { }: mkDerivation { pname = "composite-swagger"; - version = "0.5.4.0"; - sha256 = "0i2jfchl88mrk9kmf8yv7cbv006ghilqsnbic7ddsbkzrjy1vdw0"; + version = "0.5.5.0"; + sha256 = "1qisvrs93jnrrjyhzdn0xwq54jc1mc8avpzq41a39ak5xdslzf6a"; libraryHaskellDepends = [ base composite-base insert-ordered-containers lens swagger2 template-haskell text vinyl @@ -50548,12 +50810,12 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; - "composition-prelude_2_0_0_0" = callPackage + "composition-prelude_2_0_1_0" = callPackage ({ mkDerivation, base }: mkDerivation { pname = "composition-prelude"; - version = "2.0.0.0"; - sha256 = "0kz0jr5pfy6d1pm8sbxzrp0h7bnaljspggmzz382p6xp4npr6pg5"; + version = "2.0.1.0"; + sha256 = "027fzappyma8hqqkqka21af937h57fdaq8ni73skxa03pcflwqmc"; libraryHaskellDepends = [ base ]; description = "Higher-order function combinators"; license = stdenv.lib.licenses.bsd3; @@ -50790,8 +51052,8 @@ self: { }: mkDerivation { pname = "concraft"; - version = "0.14.1"; - sha256 = "0v7han8ps1ysxi929clkbx0c0vjd6dyxxhfp8q5k2jx58blwzxyg"; + version = "0.14.2"; + sha256 = "151cp99iah0fd50fkizidcla7f1kvb0jwgl1cj3j6f25j21894dy"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -50837,8 +51099,8 @@ self: { }: mkDerivation { pname = "concraft-pl"; - version = "2.1.1"; - sha256 = "1fznivcsgyjhb62jzk9a3wsv8rmynr7y7473ldbqypkjgy2rmvf2"; + version = "2.4.0"; + sha256 = "0gc50aadzryy1a8mj85i4afgip34w6pk4s2kqsn10910634lmy6h"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; @@ -51158,8 +51420,8 @@ self: { ({ mkDerivation, base }: mkDerivation { pname = "concurrent-split"; - version = "0.0.1"; - sha256 = "1rxq0l513mldz7rlpmpac7n6mipk4lciv58h77h0zypixy73qyb0"; + version = "0.0.1.1"; + sha256 = "0i9gak7q3ay8g1kzq7dg0bs36bg88n7kwy3h1r6jrni7mz7jh05f"; libraryHaskellDepends = [ base ]; description = "MVars and Channels with distinguished input and output side"; license = stdenv.lib.licenses.bsd3; @@ -51818,8 +52080,8 @@ self: { }: mkDerivation { pname = "confcrypt"; - version = "0.1.0.2"; - sha256 = "0iw47xz34f2dljsq6hm75046sy7wmzj4ndgfh9h3x4iixs5vidfw"; + version = "0.1.0.4"; + sha256 = "1c25xjpnw802pqfjksx5fxjq9ynwfjkkmyad169bvfasry98cdbb"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -51842,6 +52104,7 @@ self: { text transformers ]; license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "confetti" = callPackage @@ -52026,6 +52289,8 @@ self: { pname = "config-value-getopt"; version = "0.1.1.0"; sha256 = "0ypg8wl17vqdqsk1gpaba11v63xmqysfp4cd4ii8zha7pfmlhb4c"; + revision = "1"; + editedCabalFile = "1vdm5pgql8cggdkqxhc2z0cg2s7xayghdm51k0m3lx9396f5pxm8"; libraryHaskellDepends = [ base config-value text ]; description = "Interface between config-value and System.GetOpt"; license = stdenv.lib.licenses.mit; @@ -53989,6 +54254,8 @@ self: { pname = "country"; version = "0.1.6"; sha256 = "0a4r2jnp15xy18s6xpd4p10cgq3hd8qqzhy5lakmzymivwq6xcq9"; + revision = "1"; + editedCabalFile = "04a2s0zlm4garihnm3xl9avf88vjnbvpsyb2ckk3z7ydjq0y3938"; libraryHaskellDepends = [ aeson attoparsec base bytestring deepseq ghc-prim hashable primitive scientific text unordered-containers @@ -54289,7 +54556,7 @@ self: { libraryToolDepends = [ c2hs ]; description = "Bindings for libpython"; license = stdenv.lib.licenses.gpl3; - }) {inherit (pkgs) python34;}; + }) {python34 = null;}; "cql" = callPackage ({ mkDerivation, base, bytestring, cereal, containers, Decimal @@ -54746,8 +55013,8 @@ self: { }: mkDerivation { pname = "creatur"; - version = "5.9.25"; - sha256 = "00bhszbjz7in5z1bilb1m3ld5sdd6xk5s95h6cw882qz0i1dmlp5"; + version = "5.9.27"; + sha256 = "016f5rzn2dvd85mdjcdrc7jmy4v75sa4qf98rqyp8qc8cpcqcx4c"; libraryHaskellDepends = [ array base binary bytestring cereal cond directory exceptions filepath gray-extended hdaemonize hsyslog MonadRandom mtl random @@ -54857,8 +55124,8 @@ self: { }: mkDerivation { pname = "crf-chain1-constrained"; - version = "0.5.0"; - sha256 = "194mcafkf23lifmx2n2hnvsaxl0mfdl9zgl9awigddwxvpxsrmjq"; + version = "0.6.0"; + sha256 = "0yzwvzknn0qd8d2b0fqk1lznz8fplv6gx8x5hlmhqmi2f625yav7"; libraryHaskellDepends = [ array base binary containers data-lens data-memocombinators logfloat monad-codec parallel pedestrian-dag random sgd vector @@ -54894,8 +55161,8 @@ self: { }: mkDerivation { pname = "crf-chain2-tiers"; - version = "0.5.0"; - sha256 = "1gwfkvs9lc7ni68n2mxrqx0haawnc8dwx0b73q7a75ysx538f84x"; + version = "0.6.0"; + sha256 = "14vn96vq7ck9xs1gnjmsxi6hr8mlpa6vbr53v2v4lmbav29jqrhr"; libraryHaskellDepends = [ array base binary comonad containers data-lens data-memocombinators logfloat monad-codec parallel pedestrian-dag sgd vector @@ -56495,6 +56762,33 @@ self: { executableHaskellDepends = [ base GLUT Yampa ]; description = "3D Yampa/GLUT Puzzle Game"; license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + + "cuckoo-filter" = callPackage + ({ mkDerivation, aeson, array, base, bytestring, cereal, containers + , criterion, hashable, QuickCheck, random, tasty, tasty-hunit + , tasty-quickcheck, time + }: + mkDerivation { + pname = "cuckoo-filter"; + version = "0.2.0.1"; + sha256 = "01l1ilxdd83l60f5hmpajwszn77lfmk16aqygg1jz45zkrd3scnb"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + aeson array base bytestring cereal containers hashable time + ]; + executableHaskellDepends = [ + aeson array base bytestring cereal containers criterion hashable + random time + ]; + testHaskellDepends = [ + aeson array base bytestring cereal containers hashable QuickCheck + tasty tasty-hunit tasty-quickcheck time + ]; + description = "Pure and impure Cuckoo Filter"; + license = stdenv.lib.licenses.mit; }) {}; "cuda" = callPackage @@ -57115,8 +57409,8 @@ self: { ({ mkDerivation, base, doctest, template-haskell }: mkDerivation { pname = "d10"; - version = "0.1.0.0"; - sha256 = "0ymhfarhsryqw0h6nksz9ki640b3xa1613k40hp85mk4rqir0zjq"; + version = "0.2.1.0"; + sha256 = "0dbz1lil7qm0qnn1y5kakh6nyyc3jkv00125vfp9nk2n25yckb9z"; libraryHaskellDepends = [ base template-haskell ]; testHaskellDepends = [ base doctest ]; description = "Digits 0-9"; @@ -59289,8 +59583,8 @@ self: { ({ mkDerivation, base, pretty, syb }: mkDerivation { pname = "data-tree-print"; - version = "0.1.0.1"; - sha256 = "1zh1akyf8vvsqq39vrbn95v5md5in9fvzmz2jz79adh3w5wc5j6f"; + version = "0.1.0.2"; + sha256 = "00jh37anim8qsn553467gmfhajcz1c61zrgh1ypkqsll0gc29vy3"; libraryHaskellDepends = [ base pretty syb ]; description = "Print Data instances as a nested tree"; license = stdenv.lib.licenses.bsd3; @@ -60634,8 +60928,8 @@ self: { ({ mkDerivation, base, singletons }: mkDerivation { pname = "decidable"; - version = "0.1.2.0"; - sha256 = "1dgxkwdazqdlnc6pvqwkx531xajl4ygjm5315dz9ilacgbbl2qss"; + version = "0.1.4.0"; + sha256 = "07cw2jhvii3prsbczxpmq7g492wc89yxp77ivs01gp3bl7m25cky"; libraryHaskellDepends = [ base singletons ]; description = "Combinators for manipulating dependently-typed predicates"; license = stdenv.lib.licenses.bsd3; @@ -61755,6 +62049,8 @@ self: { pname = "deriving-compat"; version = "0.5.2"; sha256 = "0h5jfpwawp7xn9vi82zqskaypa3vypm97lz2farmmfqvnkw60mj9"; + revision = "1"; + editedCabalFile = "1s672vc7w96fmvr1p3fkqi9q80sn860j14545sskpxb8iz9f7sxg"; libraryHaskellDepends = [ base containers ghc-boot-th ghc-prim template-haskell th-abstraction transformers transformers-compat @@ -61810,8 +62106,8 @@ self: { ({ mkDerivation, base }: mkDerivation { pname = "descrilo"; - version = "0.1.0.6"; - sha256 = "166x7j8q5wg8iq1bf2qz01ps0b1pbfgizsy1zfhjd98a3zl9fid2"; + version = "0.1.0.7"; + sha256 = "00rk7m54igmrsi8j2fmql7c5wgyg7x5ws8397753470x5k2qv2ap"; libraryHaskellDepends = [ base ]; description = "Loads a list of items with fields"; license = stdenv.lib.licenses.gpl3; @@ -62948,8 +63244,8 @@ self: { pname = "diagrams-pgf"; version = "1.4"; sha256 = "11v63sjpf9029y7cvbhlq0jp8304p1hf15kyshvzmg9yijy1z3q6"; - revision = "1"; - editedCabalFile = "1f3mphrpzlribv2zhy6i8slcbph5ncvqaa3s58ghjn7pq2fa46l3"; + revision = "2"; + editedCabalFile = "1cyxi747vpzr1ryczmcav9dahcnkrykpbi1q8zvql3m9s24ikskg"; libraryHaskellDepends = [ base bytestring bytestring-builder colour containers diagrams-core diagrams-lib directory filepath hashable JuicyPixels mtl @@ -63254,8 +63550,8 @@ self: { pname = "dictionary-sharing"; version = "0.1.0.0"; sha256 = "00aspv943qdqhlk39mbk00kb1dsa5r0caj8sslrn81fnsn252fwc"; - revision = "2"; - editedCabalFile = "0pxbqck3fkfqrg51fkkplcmqxn9vllkc5ff83l282gandqv4glvi"; + revision = "3"; + editedCabalFile = "1mn7jcc7h3b8f1pn9zigqp6mc2n0qb66lms5qnrx4zswdv5w9439"; libraryHaskellDepends = [ base containers ]; description = "Sharing/memoization of class members"; license = stdenv.lib.licenses.bsd3; @@ -63423,6 +63719,8 @@ self: { pname = "diffmap"; version = "0.1.0.0"; sha256 = "0i6dyvp8ds1wz9jm7nva076pc18mz24fiz50gqgq3xv76aghl0i0"; + revision = "1"; + editedCabalFile = "0gkcsdf9jrfs5lwhayl808flwlv446mixdn3n91v5gsxbcqqrsi7"; libraryHaskellDepends = [ base containers ]; description = "diff on maps"; license = stdenv.lib.licenses.bsd3; @@ -65423,8 +65721,8 @@ self: { }: mkDerivation { pname = "dmcc"; - version = "1.0.0.1"; - sha256 = "1qlw3jx9nn2by757kqask1ib2wi32zgdj53kinj2lnjn5f9qs466"; + version = "1.1.0.0"; + sha256 = "1lrscg4b13wd4gnkg3nsl2ala851lk03p9jxmlxmf2hbf4cl6cnc"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -65978,6 +66276,58 @@ self: { license = stdenv.lib.licenses.mit; }) {}; + "docusign-base" = callPackage + ({ mkDerivation, aeson, base, bytestring, data-default, http-media + , lens, servant, servant-client, text + }: + mkDerivation { + pname = "docusign-base"; + version = "0.0.1"; + sha256 = "1qh1g8nyj606x0vapv6m07dhm4s3g5z17g1i4wk5bj63vxvms528"; + libraryHaskellDepends = [ + aeson base bytestring data-default http-media lens servant + servant-client text + ]; + description = "Low-level bindings to the DocuSign API"; + license = stdenv.lib.licenses.bsd3; + }) {}; + + "docusign-client" = callPackage + ({ mkDerivation, aeson, base, base64-bytestring, bytestring + , data-default, docusign-base, exceptions, http-client + , http-client-tls, http-types, servant-client, text, uuid + }: + mkDerivation { + pname = "docusign-client"; + version = "0.0.1"; + sha256 = "1vyb7n08vqjmc18adbs6ck01q5440a0r99ahb566v427mr9hcydg"; + libraryHaskellDepends = [ + aeson base base64-bytestring bytestring data-default docusign-base + exceptions http-client http-client-tls http-types servant-client + text uuid + ]; + description = "Client bindings for the DocuSign API"; + license = stdenv.lib.licenses.bsd3; + }) {}; + + "docusign-example" = callPackage + ({ mkDerivation, base, bytestring, docusign-base, docusign-client + , exceptions, filepath, optparse-generic, text, uuid + }: + mkDerivation { + pname = "docusign-example"; + version = "0.1.0.0"; + sha256 = "0fhyzmgdjq5rds0p0gifwg6pfsq17yyhj4nwvi6zpgzmww4vya21"; + isLibrary = false; + isExecutable = true; + executableHaskellDepends = [ + base bytestring docusign-base docusign-client exceptions filepath + optparse-generic text uuid + ]; + description = "DocuSign examples"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "docvim" = callPackage ({ mkDerivation, base, bytestring, containers, deepseq, directory , dlist, filepath, hlint, lens, mtl, optparse-applicative, parsec @@ -66231,15 +66581,15 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; - "dotenv_0_6_0_3" = callPackage + "dotenv_0_7_0_0" = callPackage ({ mkDerivation, base, base-compat, containers, directory , exceptions, hspec, hspec-megaparsec, megaparsec , optparse-applicative, process, text, transformers, yaml }: mkDerivation { pname = "dotenv"; - version = "0.6.0.3"; - sha256 = "0dckfs69k3hqfjrpxkk30liq52pjd2424r8gp6i8xb0zk1xlsqgk"; + version = "0.7.0.0"; + sha256 = "1rxr90jcn1swfr4sac331w44cm4c7ci87ll2d2w03hbdlysvdv8h"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; @@ -67077,8 +67427,8 @@ self: { ({ mkDerivation, base, text, xml-types }: mkDerivation { pname = "dtd-types"; - version = "0.3.0.1"; - sha256 = "1w2ni9b8kn242grdqb4wxvgxqpkpp9qy66d57n33l5jghlg8b0s7"; + version = "0.4.0.0"; + sha256 = "1h5ypjnpjim2lwlc6jfp8ixqg7zbkj7fg2kpnlwnyj29n9g58rka"; libraryHaskellDepends = [ base text xml-types ]; description = "Basic types for representing XML DTDs"; license = stdenv.lib.licenses.bsd3; @@ -67294,6 +67644,21 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "dunai_0_5_1" = callPackage + ({ mkDerivation, base, MonadRandom, transformers, transformers-base + }: + mkDerivation { + pname = "dunai"; + version = "0.5.1"; + sha256 = "07bkjp7z5lbm6466nc99p4ngiqkh5mgbczwl7rflxzis4w1vm997"; + libraryHaskellDepends = [ + base MonadRandom transformers transformers-base + ]; + description = "Generalised reactive framework supporting classic, arrowized and monadic FRP"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "dunai-core" = callPackage ({ mkDerivation, base, MonadRandom, transformers, transformers-base }: @@ -68004,8 +68369,8 @@ self: { }: mkDerivation { pname = "easytest"; - version = "0.2"; - sha256 = "1sd9w5p6z9mmvxid6svmnh7h43r32mrcqilb8k7kiy36ln3n8j0b"; + version = "0.2.1"; + sha256 = "0gdyawzlw6d15yz7ji599xjgfr0g7l1iq11ffr4aw3j6g3dc6m8i"; libraryHaskellDepends = [ async base call-stack containers mtl random stm text transformers ]; @@ -68621,20 +68986,20 @@ self: { "egison" = callPackage ({ mkDerivation, array, base, containers, criterion, deepseq , directory, filepath, ghc, ghc-paths, Glob, hashable, haskeline - , HUnit, mtl, parallel, parsec, process, random, regex-tdfa, split - , test-framework, test-framework-hunit, text, transformers + , HUnit, lens, mtl, parallel, parsec, process, random, regex-tdfa + , split, test-framework, test-framework-hunit, text, transformers , unordered-containers, vector }: mkDerivation { pname = "egison"; - version = "3.7.12"; - sha256 = "0dmy9hxamjpp553ipkfjwh8j3bxqql99idxcxkdsj1x4ixgm2m2g"; + version = "3.7.13"; + sha256 = "1kxlg7znyv4iaygm6gk50zw4vcijfmc16vl5bwif179v3r8nrpxn"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; libraryHaskellDepends = [ array base containers directory ghc ghc-paths hashable haskeline - mtl parallel parsec process random regex-tdfa split text + lens mtl parallel parsec process random regex-tdfa split text transformers unordered-containers vector ]; executableHaskellDepends = [ @@ -68758,21 +69123,23 @@ self: { }) {eibclient = null;}; "eigen" = callPackage - ({ mkDerivation, base, binary, bytestring, mtl, primitive - , transformers, vector + ({ mkDerivation, base, binary, bytestring, constraints, ghc-prim + , mtl, primitive, transformers, vector }: mkDerivation { pname = "eigen"; - version = "3.3.4.1"; - sha256 = "0kpbnl5yrsp9923al5g9x48yf88m4vsdryq69g8fmlh0wdqkdapa"; + version = "3.3.4.2"; + sha256 = "0l88bzp6f5bs5lpcav1c0lg2dc59rfdka2d6dx3c6gzbj1jmf5iz"; libraryHaskellDepends = [ - base binary bytestring primitive transformers vector + base binary bytestring constraints ghc-prim primitive transformers + vector ]; testHaskellDepends = [ - base binary bytestring mtl primitive transformers vector + base binary bytestring ghc-prim mtl primitive transformers vector ]; description = "Eigen C++ library (linear algebra: matrices, sparse matrices, vectors, numerical solvers)"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "either" = callPackage @@ -68920,8 +69287,8 @@ self: { pname = "ekg-core"; version = "0.1.1.4"; sha256 = "0dz9iv6viya7b5nx9gxj9g0d1k155pvb7i59azf9272wl369mn36"; - revision = "2"; - editedCabalFile = "1jky0jf6ajan5zmb46d6p4lv7293kc5gw1bcq5av733g10cwrbdk"; + revision = "3"; + editedCabalFile = "1s3545x9w01rrwzchb4f91ck0n6dc7gf0zwkryqx1b2c95ni5qa8"; libraryHaskellDepends = [ base containers ghc-prim text unordered-containers ]; @@ -69098,8 +69465,8 @@ self: { pname = "ekg-wai"; version = "0.1.0.3"; sha256 = "1sd2fz4l4slizm179x9cskqdvrpf6w4d779kah9hrnk3nqbmklxz"; - revision = "1"; - editedCabalFile = "0crcpwrnh1pi5n4dlp9cwminj1gls9ywm4fgvisafh480097b100"; + revision = "2"; + editedCabalFile = "17kca2wzlcv8nxyq096fv57jfklhz4ibnvf5nqqdszczb03j3dnn"; enableSeparateDataOutput = true; libraryHaskellDepends = [ aeson base bytestring ekg-core ekg-json filepath http-types network @@ -70223,8 +70590,8 @@ self: { }: mkDerivation { pname = "entwine"; - version = "0.0.1"; - sha256 = "08yy72lgc8cg12hbz51q06zx7fslhhnk0rjjszba8aj0qbrj8yr4"; + version = "0.0.2"; + sha256 = "08y5vxg6q5f7dakclap86i68if18srzl6q3a9hg7qyrrq6jlyv63"; libraryHaskellDepends = [ async base containers exceptions monad-loops SafeSemaphore stm text time transformers transformers-either @@ -70259,6 +70626,17 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "enum-types" = callPackage + ({ mkDerivation, base }: + mkDerivation { + pname = "enum-types"; + version = "0.1.0.0"; + sha256 = "18qiq6nnnd1c5lkvjafsqd4ypa4xpmx99diq82dz5wy2h95ci2ri"; + libraryHaskellDepends = [ base ]; + description = "small enum types"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "enumerable" = callPackage ({ mkDerivation, base, control-monad-omega, tagged }: mkDerivation { @@ -70502,6 +70880,28 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "envstatus" = callPackage + ({ mkDerivation, base, ConfigFile, mtl, parsec, process, PyF, tasty + , tasty-hspec, unix + }: + mkDerivation { + pname = "envstatus"; + version = "1.0.2"; + sha256 = "1wdvhlmqwzwxv0y3n8xhw5yjy158c7xgiyd0p2zhjghws2p1jvp5"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + base ConfigFile mtl parsec process unix + ]; + executableHaskellDepends = [ base ]; + testHaskellDepends = [ + base ConfigFile parsec PyF tasty tasty-hspec + ]; + description = "Display efficiently the state of the local environment"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "envy" = callPackage ({ mkDerivation, base, bytestring, containers, hspec, mtl , QuickCheck, quickcheck-instances, text, time, transformers @@ -72528,13 +72928,14 @@ self: { }: mkDerivation { pname = "exhaustive"; - version = "1.1.6"; - sha256 = "00gdgr9xqzy14sqx31j4afljvfc4ar2jrzmwpp3z6ybfq1saw7vk"; + version = "1.1.7"; + sha256 = "02kv3vv7gz8lqwm5iz4nddyzxp17cgsb6j12lc5kf51l481vpb1z"; libraryHaskellDepends = [ base generics-sop template-haskell transformers ]; description = "Compile time checks that a computation considers producing data through all possible constructors"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "exherbo-cabal" = callPackage @@ -72833,8 +73234,8 @@ self: { pname = "exp-extended"; version = "0.1.1.2"; sha256 = "0ymfnwq103n1paj6wl2cj6szi5nx2h2j1azy3wy4kkw6sk07m00r"; - revision = "2"; - editedCabalFile = "050v0c9l9gi1bxpqbfcl2j9mdiv7xdh1mdfwymxcgpjydv60xwh0"; + revision = "3"; + editedCabalFile = "0gd1jwhhj5qjvfysvrm41zywx3cq6n131ym2x94z68cpswdmv0qn"; libraryHaskellDepends = [ base compensated log-domain ]; description = "floating point with extended exponent range"; license = stdenv.lib.licenses.bsd3; @@ -73247,7 +73648,7 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; - "extensible_0_4_10" = callPackage + "extensible_0_4_10_1" = callPackage ({ mkDerivation, aeson, base, bytestring, cassava, comonad , constraints, deepseq, exceptions, ghc-prim, hashable, lens , monad-skeleton, mtl, prettyprinter, primitive, profunctors @@ -73257,8 +73658,8 @@ self: { }: mkDerivation { pname = "extensible"; - version = "0.4.10"; - sha256 = "012xryq2jz7k6dmrzjh8j3yn9ggyna63vppi6xwdqjxks9xms2zq"; + version = "0.4.10.1"; + sha256 = "009z0grpjnnmnsc887k6vgfz5w55mniax25dl4ispj1nq74djksb"; libraryHaskellDepends = [ aeson base bytestring cassava comonad constraints deepseq exceptions ghc-prim hashable monad-skeleton mtl prettyprinter @@ -73295,8 +73696,8 @@ self: { }: mkDerivation { pname = "extensible-effects"; - version = "3.1.0.1"; - sha256 = "1znqhcx5y4mpkbib18nma2c6bw4wxyxlxg3s8kafdalrx61rdhy3"; + version = "3.1.0.2"; + sha256 = "0g568pp3sxzzzcpbcrvx76msn58nn41g1r4wq8sfvvg1hb28xpf5"; libraryHaskellDepends = [ base monad-control transformers-base ]; testHaskellDepends = [ base doctest HUnit monad-control QuickCheck silently test-framework @@ -73311,23 +73712,30 @@ self: { }) {}; "extensible-effects-concurrent" = callPackage - ({ mkDerivation, base, containers, data-default, deepseq, directory - , extensible-effects, filepath, HUnit, lens, logging-effect - , monad-control, mtl, parallel, process, QuickCheck, random, stm - , tagged, tasty, tasty-discover, tasty-hunit, time, transformers + ({ mkDerivation, async, base, containers, data-default, deepseq + , directory, exceptions, extensible-effects, filepath, HUnit, lens + , monad-control, mtl, parallel, process, QuickCheck + , safe-exceptions, stm, tasty, tasty-discover, tasty-hunit, time + , transformers-base }: mkDerivation { pname = "extensible-effects-concurrent"; - version = "0.6.2"; - sha256 = "11cqk78c0lfsa8mkq7ymxsral0g24p1im4r1ndqsf7rxczjmc37c"; + version = "0.12.0"; + sha256 = "1kli2byyb9vrgrd912yh0fkiv65qn31qxjh5fmq85kcxqvgvna3c"; + isLibrary = true; + isExecutable = true; libraryHaskellDepends = [ - base containers data-default deepseq directory extensible-effects - filepath lens logging-effect monad-control mtl parallel process - QuickCheck random stm tagged time transformers + async base containers data-default deepseq exceptions + extensible-effects filepath lens monad-control mtl parallel process + QuickCheck safe-exceptions stm time transformers-base + ]; + executableHaskellDepends = [ + base data-default deepseq directory extensible-effects filepath + lens ]; testHaskellDepends = [ - base containers deepseq extensible-effects HUnit lens QuickCheck - stm tasty tasty-discover tasty-hunit + async base containers data-default deepseq extensible-effects HUnit + lens QuickCheck stm tasty tasty-discover tasty-hunit ]; testToolDepends = [ tasty-discover ]; description = "Message passing concurrency as extensible-effect"; @@ -73839,20 +74247,18 @@ self: { }) {}; "fast-arithmetic" = callPackage - ({ mkDerivation, arithmoi, base, combinat-compat - , composition-prelude, criterion, gmpint, hspec, QuickCheck + ({ mkDerivation, arithmoi, base, combinat, criterion, hgmp, hspec + , QuickCheck }: mkDerivation { pname = "fast-arithmetic"; - version = "0.6.3.0"; - sha256 = "0f02fi63xq0x1r5qqagwzz6wbsxblz99jm2g994gs13ba11abix1"; - libraryHaskellDepends = [ base composition-prelude gmpint ]; - testHaskellDepends = [ - arithmoi base combinat-compat hspec QuickCheck - ]; - benchmarkHaskellDepends = [ - arithmoi base combinat-compat criterion - ]; + version = "0.6.4.1"; + sha256 = "0rnbqj495lj2c5xmk35iwhlx6h4m14b35hqz73adspm4ryym00b3"; + revision = "2"; + editedCabalFile = "0hla00m1v9sk480yif3kgi2zzqq7snfz6san3yznigpxqzq5rczm"; + libraryHaskellDepends = [ base hgmp ]; + testHaskellDepends = [ arithmoi base combinat hspec QuickCheck ]; + benchmarkHaskellDepends = [ arithmoi base combinat criterion ]; description = "Fast functions on integers"; license = stdenv.lib.licenses.bsd3; hydraPlatforms = stdenv.lib.platforms.none; @@ -74779,6 +75185,31 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "feed_1_0_1_0" = callPackage + ({ mkDerivation, base, base-compat, bytestring, HUnit + , markdown-unlit, old-locale, old-time, safe, test-framework + , test-framework-hunit, text, time, time-locale-compat, utf8-string + , xml-conduit, xml-types + }: + mkDerivation { + pname = "feed"; + version = "1.0.1.0"; + sha256 = "076krkyvbh24s50chdw3nz6w2svwchys65ppjzlm8gy42ddhbgc7"; + enableSeparateDataOutput = true; + libraryHaskellDepends = [ + base base-compat bytestring old-locale old-time safe text time + time-locale-compat utf8-string xml-conduit xml-types + ]; + testHaskellDepends = [ + base base-compat HUnit old-time test-framework test-framework-hunit + text time xml-conduit xml-types + ]; + testToolDepends = [ markdown-unlit ]; + description = "Interfacing with RSS (v 0.9x, 2.x, 1.0) + Atom feeds."; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "feed-cli" = callPackage ({ mkDerivation, base, directory, feed, old-locale, old-time, time , xml @@ -76462,8 +76893,8 @@ self: { ({ mkDerivation, base, random }: mkDerivation { pname = "fixedprec"; - version = "0.2.2.1"; - sha256 = "0s921nhkmdglmcwzyr048r04dswc6hz7kvh9p4lvd8i2mxq0szgi"; + version = "0.2.2.2"; + sha256 = "01ss9rzg2r4gii6f7771n4vdyg022skyws6ncc3l62xycgz153a7"; libraryHaskellDepends = [ base random ]; description = "A fixed-precision real number type"; license = stdenv.lib.licenses.bsd3; @@ -76759,21 +77190,20 @@ self: { "flat" = callPackage ({ mkDerivation, array, base, bytestring, containers, deepseq - , dlist, doctest, filemanip, ghc-prim, mono-traversable, pretty - , primitive, quickcheck-instances, tasty, tasty-hunit - , tasty-quickcheck, text, vector + , dlist, ghc-prim, mono-traversable, pretty, primitive, QuickCheck + , tasty, tasty-hunit, tasty-quickcheck, text, vector }: mkDerivation { pname = "flat"; - version = "0.3.2"; - sha256 = "0489w132m6j47m0jf1svwvql3fmw58iz9l2rqnhn4c5gg91wj53q"; + version = "0.3.4"; + sha256 = "1v7c5nrvhys4flq5xacws59w25qzbb6mvwhvk4f6jb6impmqnwyw"; libraryHaskellDepends = [ array base bytestring containers deepseq dlist ghc-prim mono-traversable pretty primitive text vector ]; testHaskellDepends = [ - base bytestring containers deepseq doctest filemanip ghc-prim - quickcheck-instances tasty tasty-hunit tasty-quickcheck text + array base bytestring containers deepseq ghc-prim QuickCheck tasty + tasty-hunit tasty-quickcheck text ]; description = "Principled and efficient bit-oriented binary serialization"; license = stdenv.lib.licenses.bsd3; @@ -77086,8 +77516,8 @@ self: { pname = "flock"; version = "0.3.1.8"; sha256 = "1g1gf7qnlqkl57h28nzxnbzj7v2h73czffp5y7s7jm9vbihcwd4n"; - revision = "4"; - editedCabalFile = "02jqldkxg366v0gljiqg7zv5sd3zhswabcvg5xx6h8ns67kn3my6"; + revision = "5"; + editedCabalFile = "19jqvzacd1639r8c8vs2fdng188mjg8i76x0fghda71d7a2jgp97"; libraryHaskellDepends = [ base lifted-base monad-control transformers unix ]; @@ -77275,21 +77705,21 @@ self: { "fltkhs" = callPackage ({ mkDerivation, base, bytestring, c2hs, Cabal, directory, filepath - , mtl, parsec, text + , mtl, parsec, pkg-config, text, vector }: mkDerivation { pname = "fltkhs"; - version = "0.5.4.5"; - sha256 = "17iqpnn0zgwifb937kllkfyz8qf37da90z8iyay348gy3siwjxic"; + version = "0.6.0.0"; + sha256 = "1cbyp8rq9yzx6jrw68dbprkdyd8pkdqbxx08wajyg7bfks6j39cb"; isLibrary = true; isExecutable = true; setupHaskellDepends = [ base Cabal directory filepath ]; - libraryHaskellDepends = [ base bytestring text ]; - libraryToolDepends = [ c2hs ]; + libraryHaskellDepends = [ base bytestring text vector ]; + libraryToolDepends = [ c2hs pkg-config ]; executableHaskellDepends = [ base directory filepath mtl parsec ]; description = "FLTK bindings"; license = stdenv.lib.licenses.mit; - }) {}; + }) {pkg-config = null;}; "fltkhs-demos" = callPackage ({ mkDerivation, base, bytestring, directory, fltkhs, process, stm @@ -77349,6 +77779,24 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "fltkhs-themes" = callPackage + ({ mkDerivation, base, bytestring, Cabal, fltkhs, fontconfig + , load-font, text, vector + }: + mkDerivation { + pname = "fltkhs-themes"; + version = "0.1.0.1"; + sha256 = "03awhraincinrqr1zzb9c64mkb391isw3gb87csa1dkqk846wij6"; + enableSeparateDataOutput = true; + setupHaskellDepends = [ base Cabal ]; + libraryHaskellDepends = [ + base bytestring fltkhs load-font text vector + ]; + librarySystemDepends = [ fontconfig ]; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {inherit (pkgs) fontconfig;}; + "fluent-logger" = callPackage ({ mkDerivation, attoparsec, base, bytestring, cereal , cereal-conduit, conduit, conduit-extra, containers, criterion @@ -77540,10 +77988,8 @@ self: { }: mkDerivation { pname = "fmt"; - version = "0.6"; - sha256 = "14hk6ra8j1zzw7ibimj207mi1xl5pmln6kyz0y66j4bg1r8invsy"; - revision = "1"; - editedCabalFile = "0xmi4qxq12qfj4ry1ifb0za7jdlvj65v16bzdqi8r7p1xrxy5cki"; + version = "0.6.1"; + sha256 = "1c6a0nrm90drs13s1hry9xs8j7dx37j21f7kllpx5s240nqy4c6c"; libraryHaskellDepends = [ base base64-bytestring bytestring containers formatting microlens text time time-locale-compat @@ -77637,6 +78083,30 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "focuslist" = callPackage + ({ mkDerivation, base, Cabal, cabal-doctest, containers, doctest + , genvalidity-containers, genvalidity-hspec, hedgehog, lens + , mono-traversable, QuickCheck, tasty, tasty-hedgehog, tasty-hspec + , template-haskell + }: + mkDerivation { + pname = "focuslist"; + version = "0.1.0.0"; + sha256 = "1przphis37yh06q2scqh2njcrvgynh0p9km52f4a5yvmnxvaqs8n"; + isLibrary = true; + isExecutable = true; + setupHaskellDepends = [ base Cabal cabal-doctest ]; + libraryHaskellDepends = [ + base containers lens mono-traversable QuickCheck + ]; + testHaskellDepends = [ + base doctest genvalidity-containers genvalidity-hspec hedgehog lens + QuickCheck tasty tasty-hedgehog tasty-hspec template-haskell + ]; + description = "Lists with a focused element"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "fold-debounce" = callPackage ({ mkDerivation, base, data-default-class, hspec, stm, stm-delay , time @@ -78878,8 +79348,8 @@ self: { }: mkDerivation { pname = "free-algebras"; - version = "0.0.5.1"; - sha256 = "1h8966am7j0xdqq2vmfj2cyrzmkd70bs1kx9fpx1bgn1acdpg1xa"; + version = "0.0.6.0"; + sha256 = "1332awl3aps1zw537ym18jp1d5igwsnpk3acmrznks7vfsdr27as"; libraryHaskellDepends = [ base constraints containers data-fix dlist free groups kan-extensions mtl natural-numbers transformers @@ -78893,6 +79363,17 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "free-category" = callPackage + ({ mkDerivation, base, free-algebras }: + mkDerivation { + pname = "free-category"; + version = "0.0.1.0"; + sha256 = "0cpcn10kbsx1xvvxvvcx5hpa0p9vhkrjf7cmzva2zpmhdj4jp5rg"; + libraryHaskellDepends = [ base free-algebras ]; + description = "Free category"; + license = stdenv.lib.licenses.mpl20; + }) {}; + "free-concurrent" = callPackage ({ mkDerivation, base, type-aligned }: mkDerivation { @@ -79289,6 +79770,100 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "freer-simple_1_2_0_0" = callPackage + ({ mkDerivation, base, criterion, extensible-effects, free, mtl + , natural-transformation, QuickCheck, tasty, tasty-hunit + , tasty-quickcheck, template-haskell, transformers-base + }: + mkDerivation { + pname = "freer-simple"; + version = "1.2.0.0"; + sha256 = "1z0f0m03szzcy1s6msqdlaj266dq0bkkwlwcr7p28xv7lj6gxgdb"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + base natural-transformation template-haskell transformers-base + ]; + executableHaskellDepends = [ base ]; + testHaskellDepends = [ + base QuickCheck tasty tasty-hunit tasty-quickcheck + ]; + benchmarkHaskellDepends = [ + base criterion extensible-effects free mtl + ]; + description = "Implementation of a friendly effect system for Haskell"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + + "freer-simple-catching" = callPackage + ({ mkDerivation, base, freer-simple, hspec }: + mkDerivation { + pname = "freer-simple-catching"; + version = "0.1.0.0"; + sha256 = "140dmmcnpnvn3hhwjic6ja86qhw84k1547zfya7h1gm4sw36mq56"; + libraryHaskellDepends = [ base freer-simple ]; + testHaskellDepends = [ base freer-simple hspec ]; + description = "Checked runtime exceptions with freer-simple"; + license = stdenv.lib.licenses.mit; + }) {}; + + "freer-simple-http" = callPackage + ({ mkDerivation, aeson, base, bytestring, containers, freer-simple + , hspec, http-client, http-types + }: + mkDerivation { + pname = "freer-simple-http"; + version = "0.1.0.0"; + sha256 = "0wxqlwqgsphmzhpsbkdq9bl5vjmq598x1q20dd235bdxgggnxd57"; + libraryHaskellDepends = [ + aeson base bytestring containers freer-simple http-client + http-types + ]; + testHaskellDepends = [ + aeson base bytestring containers freer-simple hspec http-client + http-types + ]; + description = "Make HTTP requests with freer-simple!"; + license = stdenv.lib.licenses.mit; + }) {}; + + "freer-simple-profiling" = callPackage + ({ mkDerivation, base, containers, freer-simple, hspec, time }: + mkDerivation { + pname = "freer-simple-profiling"; + version = "0.1.0.0"; + sha256 = "1ll8r8z7khxlr2yix9c8m3bjdq3yncvrsg6pj03n68wsf26zgf17"; + libraryHaskellDepends = [ base containers freer-simple time ]; + testHaskellDepends = [ base containers freer-simple hspec time ]; + description = "Automatic profling of freer-simple programs"; + license = stdenv.lib.licenses.mit; + }) {}; + + "freer-simple-random" = callPackage + ({ mkDerivation, base, containers, freer-simple, hspec, random }: + mkDerivation { + pname = "freer-simple-random"; + version = "0.1.0.0"; + sha256 = "0bp0px1d7lsghaq7giaqm3xlhp0fkrf15dxpqzlglh0ysd2xg3x3"; + libraryHaskellDepends = [ base containers freer-simple random ]; + testHaskellDepends = [ base containers freer-simple hspec random ]; + description = "Random number generators using freer-simple"; + license = stdenv.lib.licenses.mit; + }) {}; + + "freer-simple-time" = callPackage + ({ mkDerivation, base, freer-simple, hspec, time }: + mkDerivation { + pname = "freer-simple-time"; + version = "0.1.0.0"; + sha256 = "08ph7nlj3f3iyvqljwn1hz4z8x0nzl19fsmb0rkk9sjbkk043ar8"; + libraryHaskellDepends = [ base freer-simple time ]; + testHaskellDepends = [ base freer-simple hspec time ]; + description = "freer-simple interface to IO based time functions"; + license = stdenv.lib.licenses.mit; + }) {}; + "freesect" = callPackage ({ mkDerivation, array, base, cpphs, directory, mtl, parallel , pretty, random, syb @@ -80393,8 +80968,8 @@ self: { }: mkDerivation { pname = "funflow"; - version = "1.3.2"; - sha256 = "01r1l1r8qg6w7wfcbs7qwxy22b7rd1cdixds425ynp9h0246lrmf"; + version = "1.4.0"; + sha256 = "1pd690y41bf6lrk6bzl730hvpaaazya927nslwp8ii5rcn6wjx7f"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -80487,6 +81062,19 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "fused-effects" = callPackage + ({ mkDerivation, base, deepseq, doctest, hspec, MonadRandom, random + }: + mkDerivation { + pname = "fused-effects"; + version = "0.1.1.0"; + sha256 = "1wcrixfpz0q93xskb90p8a2jypsghbpgwn4fjy6k1ad4ihxn19hl"; + libraryHaskellDepends = [ base deepseq MonadRandom random ]; + testHaskellDepends = [ base doctest hspec ]; + description = "A fast, flexible, fused effect system"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "fusion" = callPackage ({ mkDerivation, base, directory, doctest, filepath, pipes-safe , transformers, void @@ -80502,6 +81090,62 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "futhark" = callPackage + ({ mkDerivation, aeson, alex, ansi-terminal, array, base + , bifunctors, binary, blaze-html, bytestring, containers + , data-binary-ieee754, directory, directory-tree, dlist, extra + , file-embed, filepath, free, gitrev, happy, haskeline, http-client + , http-client-tls, http-conduit, HUnit, language-c-quote + , mainland-pretty, markdown, megaparsec, mtl, neat-interpolation + , parallel, parser-combinators, process, process-extras, QuickCheck + , random, raw-strings-qq, regex-tdfa, srcloc, tasty, tasty-hunit + , tasty-quickcheck, template-haskell, temporary, text + , th-lift-instances, time, transformers, vector + , vector-binary-instances, versions, zip-archive, zlib + }: + mkDerivation { + pname = "futhark"; + version = "0.7.4"; + sha256 = "1qjcza0i0y6qalyim5kclz3x4lj667d4d4y2amk3sn4qbgaibajs"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + ansi-terminal array base bifunctors binary blaze-html bytestring + containers data-binary-ieee754 directory directory-tree dlist extra + file-embed filepath free gitrev http-client http-client-tls + http-conduit language-c-quote mainland-pretty markdown megaparsec + mtl neat-interpolation parallel parser-combinators process + process-extras raw-strings-qq regex-tdfa srcloc template-haskell + text th-lift-instances time transformers vector + vector-binary-instances versions zip-archive zlib + ]; + libraryToolDepends = [ alex happy ]; + executableHaskellDepends = [ + aeson ansi-terminal array base bifunctors binary blaze-html + bytestring containers data-binary-ieee754 directory directory-tree + dlist extra file-embed filepath free gitrev haskeline http-client + http-client-tls http-conduit language-c-quote mainland-pretty + markdown megaparsec mtl neat-interpolation parallel + parser-combinators process process-extras random raw-strings-qq + regex-tdfa srcloc template-haskell temporary text th-lift-instances + time transformers vector vector-binary-instances versions + zip-archive zlib + ]; + testHaskellDepends = [ + ansi-terminal array base bifunctors binary blaze-html bytestring + containers data-binary-ieee754 directory directory-tree dlist extra + file-embed filepath free gitrev http-client http-client-tls + http-conduit HUnit language-c-quote mainland-pretty markdown + megaparsec mtl neat-interpolation parallel parser-combinators + process process-extras QuickCheck raw-strings-qq regex-tdfa srcloc + tasty tasty-hunit tasty-quickcheck template-haskell text + th-lift-instances time transformers vector vector-binary-instances + versions zip-archive zlib + ]; + description = "An optimising compiler for a functional, array-oriented language"; + license = stdenv.lib.licenses.isc; + }) {}; + "futun" = callPackage ({ mkDerivation, base, bytestring, network, unix }: mkDerivation { @@ -81194,8 +81838,8 @@ self: { ({ mkDerivation, base, GLUT, OpenGLRaw, Vec }: mkDerivation { pname = "gearbox"; - version = "1.0.0.5"; - sha256 = "01mzvbmzq7bl665xy5znqcivxp0b6x6wcrzq8r6kzsym5izm9qz4"; + version = "1.0.0.6"; + sha256 = "0f8zljk145yq3lq3ngiana5g39ybqijsv7n3b11wdr7mzymdgyw2"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ base GLUT OpenGLRaw Vec ]; @@ -81949,14 +82593,14 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; - "generics-sop_0_4_0_0" = callPackage + "generics-sop_0_4_0_1" = callPackage ({ mkDerivation, base, criterion, deepseq, ghc-prim, sop-core , template-haskell }: mkDerivation { pname = "generics-sop"; - version = "0.4.0.0"; - sha256 = "0blx09k173qgaghqnsvz6v2r6san1kn62k5c57wilya94l1996ra"; + version = "0.4.0.1"; + sha256 = "160knr2phnzh2gldfv954lz029jzc7y8kz5xpmbf4z3vb5ngm6fw"; libraryHaskellDepends = [ base ghc-prim sop-core template-haskell ]; @@ -81975,8 +82619,8 @@ self: { pname = "generics-sop-lens"; version = "0.1.2.1"; sha256 = "0p2ji955hy9r6c1wmiziga9pbbli24my3vmx19gf4i8db36d8jaf"; - revision = "5"; - editedCabalFile = "1q6953xi46qvbknaq2j8x2zqmk2q1mmf8xczjyib3abxz0rp3608"; + revision = "6"; + editedCabalFile = "0j4j3kk2nsl5n5gp0vrzqdc5y9ly31b4nvhq0bpgcpzibvik7ssw"; libraryHaskellDepends = [ base generics-sop lens ]; description = "Lenses for types in generics-sop"; license = stdenv.lib.licenses.bsd3; @@ -82225,12 +82869,12 @@ self: { license = stdenv.lib.licenses.mit; }) {}; - "genvalidity_0_6_1_0" = callPackage + "genvalidity_0_7_0_0" = callPackage ({ mkDerivation, base, hspec, hspec-core, QuickCheck, validity }: mkDerivation { pname = "genvalidity"; - version = "0.6.1.0"; - sha256 = "0wjqwn040yn7wpmcmhfp5slvyspal104p5wgkwwi40ykaj2zhayg"; + version = "0.7.0.0"; + sha256 = "1bjsqqyr1n306icfdl8sh3amqq95zpr5hawwbv46nbf0rxci88w1"; libraryHaskellDepends = [ base QuickCheck validity ]; testHaskellDepends = [ base hspec hspec-core QuickCheck ]; description = "Testing utilities for the validity library"; @@ -82278,21 +82922,21 @@ self: { license = stdenv.lib.licenses.mit; }) {}; - "genvalidity-bytestring_0_3_0_0" = callPackage + "genvalidity-bytestring_0_3_0_1" = callPackage ({ mkDerivation, base, bytestring, deepseq, genvalidity , genvalidity-hspec, hspec, QuickCheck, validity , validity-bytestring }: mkDerivation { pname = "genvalidity-bytestring"; - version = "0.3.0.0"; - sha256 = "1jmy41mqjh3zj512fjikn6vqjvx81cdvi9llc9f0yp2h2rkmw4hf"; + version = "0.3.0.1"; + sha256 = "1jc3hd5aad5vblb1mmb1xzgfdcnk37w50vxyznr1m16rdfg1xrz8"; libraryHaskellDepends = [ base bytestring genvalidity QuickCheck validity validity-bytestring ]; testHaskellDepends = [ base bytestring deepseq genvalidity genvalidity-hspec hspec - QuickCheck + QuickCheck validity ]; description = "GenValidity support for ByteString"; license = stdenv.lib.licenses.mit; @@ -82317,6 +82961,25 @@ self: { license = stdenv.lib.licenses.mit; }) {}; + "genvalidity-containers_0_5_1_1" = callPackage + ({ mkDerivation, base, containers, genvalidity, genvalidity-hspec + , hspec, QuickCheck, validity, validity-containers + }: + mkDerivation { + pname = "genvalidity-containers"; + version = "0.5.1.1"; + sha256 = "1z7bmbwi07nylkgm3dysmnv57z1iww2sjy2zv88jpg6nvq9r9ffg"; + libraryHaskellDepends = [ + base containers genvalidity QuickCheck validity validity-containers + ]; + testHaskellDepends = [ + base containers genvalidity genvalidity-hspec hspec validity + ]; + description = "GenValidity support for containers"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "genvalidity-hspec" = callPackage ({ mkDerivation, base, doctest, genvalidity, genvalidity-property , hspec, hspec-core, QuickCheck, transformers, validity @@ -82336,6 +82999,27 @@ self: { license = stdenv.lib.licenses.mit; }) {}; + "genvalidity-hspec_0_6_2_1" = callPackage + ({ mkDerivation, base, doctest, genvalidity, genvalidity-property + , hspec, hspec-core, QuickCheck, transformers, validity + }: + mkDerivation { + pname = "genvalidity-hspec"; + version = "0.6.2.1"; + sha256 = "100mjmbjfzy431a52yqkq2rja0mb5zw8dbkpfbfy17rdkwwx2yn1"; + libraryHaskellDepends = [ + base genvalidity genvalidity-property hspec hspec-core QuickCheck + transformers validity + ]; + testHaskellDepends = [ + base doctest genvalidity genvalidity-property hspec hspec-core + QuickCheck validity + ]; + description = "Standard spec's for GenValidity instances"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "genvalidity-hspec-aeson" = callPackage ({ mkDerivation, aeson, base, bytestring, deepseq, doctest , genvalidity, genvalidity-aeson, genvalidity-hspec @@ -82357,6 +83041,29 @@ self: { license = stdenv.lib.licenses.mit; }) {}; + "genvalidity-hspec-aeson_0_3_0_1" = callPackage + ({ mkDerivation, aeson, base, bytestring, deepseq, doctest + , genvalidity, genvalidity-aeson, genvalidity-hspec + , genvalidity-property, genvalidity-text, hspec, QuickCheck, text + , validity + }: + mkDerivation { + pname = "genvalidity-hspec-aeson"; + version = "0.3.0.1"; + sha256 = "0x5ja3d6vab2gmcqif3cvvbvmdpxp4hrc4ygzns5pw91nlrf5lm2"; + libraryHaskellDepends = [ + aeson base bytestring deepseq genvalidity genvalidity-hspec hspec + QuickCheck + ]; + testHaskellDepends = [ + aeson base doctest genvalidity genvalidity-aeson genvalidity-hspec + genvalidity-property genvalidity-text hspec text validity + ]; + description = "Standard spec's for aeson-related instances"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "genvalidity-hspec-binary" = callPackage ({ mkDerivation, base, binary, deepseq, doctest, genvalidity , genvalidity-hspec, hspec, QuickCheck @@ -82373,6 +83080,26 @@ self: { license = stdenv.lib.licenses.mit; }) {}; + "genvalidity-hspec-binary_0_2_0_3" = callPackage + ({ mkDerivation, base, binary, deepseq, doctest, genvalidity + , genvalidity-hspec, genvalidity-property, hspec, QuickCheck + , validity + }: + mkDerivation { + pname = "genvalidity-hspec-binary"; + version = "0.2.0.3"; + sha256 = "1am9brcf3wh2fdrfwlkcqiamwc2zlcw3lihpcqgz0sm3jhka56xr"; + libraryHaskellDepends = [ + base binary deepseq genvalidity genvalidity-hspec hspec QuickCheck + ]; + testHaskellDepends = [ + base doctest genvalidity genvalidity-property hspec validity + ]; + description = "Standard spec's for binary-related Instances"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "genvalidity-hspec-cereal" = callPackage ({ mkDerivation, base, cereal, deepseq, doctest, genvalidity , genvalidity-hspec, hspec, QuickCheck @@ -82389,6 +83116,26 @@ self: { license = stdenv.lib.licenses.mit; }) {}; + "genvalidity-hspec-cereal_0_2_0_3" = callPackage + ({ mkDerivation, base, cereal, deepseq, doctest, genvalidity + , genvalidity-hspec, genvalidity-property, hspec, QuickCheck + , validity + }: + mkDerivation { + pname = "genvalidity-hspec-cereal"; + version = "0.2.0.3"; + sha256 = "11bii2nf52jfarfb5jzgj6pmsz59mcvivb8nxc90z97gdd5w6zll"; + libraryHaskellDepends = [ + base cereal deepseq genvalidity genvalidity-hspec hspec QuickCheck + ]; + testHaskellDepends = [ + base doctest genvalidity genvalidity-property hspec validity + ]; + description = "Standard spec's for cereal-related instances"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "genvalidity-hspec-hashable" = callPackage ({ mkDerivation, base, doctest, genvalidity, genvalidity-hspec , genvalidity-property, hashable, hspec, hspec-core, QuickCheck @@ -82410,19 +83157,42 @@ self: { license = stdenv.lib.licenses.mit; }) {}; + "genvalidity-hspec-hashable_0_2_0_3" = callPackage + ({ mkDerivation, base, doctest, genvalidity, genvalidity-hspec + , genvalidity-property, hashable, hspec, hspec-core, QuickCheck + , validity + }: + mkDerivation { + pname = "genvalidity-hspec-hashable"; + version = "0.2.0.3"; + sha256 = "0lb1aiv07fbbkyhh8ig2lhqgm9yibrny2bw9qwbdkwwsi6hk4566"; + libraryHaskellDepends = [ + base genvalidity genvalidity-hspec genvalidity-property hashable + hspec QuickCheck validity + ]; + testHaskellDepends = [ + base doctest genvalidity genvalidity-hspec genvalidity-property + hashable hspec hspec-core QuickCheck validity + ]; + description = "Standard spec's for Hashable instances"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "genvalidity-hspec-optics" = callPackage ({ mkDerivation, base, doctest, genvalidity, genvalidity-hspec - , hspec, microlens, QuickCheck + , genvalidity-property, hspec, microlens, QuickCheck, validity }: mkDerivation { pname = "genvalidity-hspec-optics"; - version = "0.1.1.0"; - sha256 = "13nspyfd8apvqf30dr8zz027d60qh2f25rc6gk8fliiq626ajz17"; + version = "0.1.1.1"; + sha256 = "121pjin5g1mgdqjydvj68639d5f17i3ibxrl8iiigp4q3xywp4ha"; libraryHaskellDepends = [ base genvalidity genvalidity-hspec hspec microlens QuickCheck ]; testHaskellDepends = [ - base doctest genvalidity genvalidity-hspec hspec microlens + base doctest genvalidity genvalidity-hspec genvalidity-property + hspec microlens validity ]; description = "Standard spec's for optics"; license = stdenv.lib.licenses.mit; @@ -82487,6 +83257,23 @@ self: { license = stdenv.lib.licenses.mit; }) {}; + "genvalidity-property_0_3_0_0" = callPackage + ({ mkDerivation, base, directory, doctest, filepath, genvalidity + , hspec, QuickCheck, validity + }: + mkDerivation { + pname = "genvalidity-property"; + version = "0.3.0.0"; + sha256 = "03cpmkqmfqypj9kydrdzs0pyix0ffwrlx8idzvgyrqiyhg03rsis"; + libraryHaskellDepends = [ + base genvalidity hspec QuickCheck validity + ]; + testHaskellDepends = [ base directory doctest filepath ]; + description = "Standard properties for functions on `Validity` types"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "genvalidity-scientific" = callPackage ({ mkDerivation, base, genvalidity, genvalidity-hspec, hspec , QuickCheck, scientific, validity, validity-scientific @@ -82559,6 +83346,28 @@ self: { license = stdenv.lib.licenses.mit; }) {}; + "genvalidity-unordered-containers_0_2_0_4" = callPackage + ({ mkDerivation, base, genvalidity, genvalidity-hspec, hashable + , hspec, QuickCheck, unordered-containers, validity + , validity-unordered-containers + }: + mkDerivation { + pname = "genvalidity-unordered-containers"; + version = "0.2.0.4"; + sha256 = "0rkvwm5imbgl8cx5pdk16dc4wzhcndw6g3wwxs0blykiri32wl3q"; + libraryHaskellDepends = [ + base genvalidity hashable QuickCheck unordered-containers validity + validity-unordered-containers + ]; + testHaskellDepends = [ + base genvalidity genvalidity-hspec hspec unordered-containers + validity + ]; + description = "GenValidity support for unordered-containers"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "genvalidity-uuid" = callPackage ({ mkDerivation, base, genvalidity, genvalidity-hspec, hspec , QuickCheck, uuid, validity, validity-uuid @@ -82595,6 +83404,25 @@ self: { license = stdenv.lib.licenses.mit; }) {}; + "genvalidity-vector_0_2_0_3" = callPackage + ({ mkDerivation, base, genvalidity, genvalidity-hspec, hspec + , QuickCheck, validity, validity-vector, vector + }: + mkDerivation { + pname = "genvalidity-vector"; + version = "0.2.0.3"; + sha256 = "161w5shgj1k8691mmi9ddhxrnrqhsp502ywln2h0sk55zqcj1i5k"; + libraryHaskellDepends = [ + base genvalidity QuickCheck validity validity-vector vector + ]; + testHaskellDepends = [ + base genvalidity genvalidity-hspec hspec vector + ]; + description = "GenValidity support for vector"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "geo-resolver" = callPackage ({ mkDerivation, aeson, base, base64-bytestring, blaze-builder , bytestring, http-conduit, http-types, HUnit, QuickCheck @@ -82869,6 +83697,26 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "getopt-generics_0_13_0_3" = callPackage + ({ mkDerivation, base, base-compat, base-orphans, filepath + , generics-sop, hspec, QuickCheck, safe, silently, tagged + }: + mkDerivation { + pname = "getopt-generics"; + version = "0.13.0.3"; + sha256 = "1202xsfvygd06h1d70v73ldwj32qv6sqadk5zl2979dgjx4841db"; + libraryHaskellDepends = [ + base base-compat base-orphans generics-sop tagged + ]; + testHaskellDepends = [ + base base-compat base-orphans filepath generics-sop hspec + QuickCheck safe silently tagged + ]; + description = "Create command line interfaces with ease"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "getopt-simple" = callPackage ({ mkDerivation, base, containers }: mkDerivation { @@ -83181,8 +84029,8 @@ self: { }: mkDerivation { pname = "ghc-events"; - version = "0.8.0"; - sha256 = "1wdxap20wh8sdaqnpsk463mihg6v3va786zb1amgzrcjpsv49is5"; + version = "0.8.0.1"; + sha256 = "1658lr4av48y8m0p5fs3sjxkkbdkwdf6m02byzw69gqg3xzz1i99"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -83265,15 +84113,15 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; - "ghc-exactprint_0_5_8_1" = callPackage + "ghc-exactprint_0_5_8_2" = callPackage ({ mkDerivation, base, bytestring, containers, Diff, directory , filemanip, filepath, free, ghc, ghc-boot, ghc-paths, HUnit, mtl , silently, syb }: mkDerivation { pname = "ghc-exactprint"; - version = "0.5.8.1"; - sha256 = "1qjl137f4lpadkgdyfjnkkga8vqyw0x27plpyw57aqhc8qmcylhh"; + version = "0.5.8.2"; + sha256 = "18wlhvgpbk7ym1vbi8fkdwbjhcplgr7zcqm328yi4v7rilbxw7cn"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -83801,6 +84649,21 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "ghc-syntax-highlighter_0_0_3_0" = callPackage + ({ mkDerivation, base, ghc, hspec, hspec-discover, text }: + mkDerivation { + pname = "ghc-syntax-highlighter"; + version = "0.0.3.0"; + sha256 = "077cvrx25qdl04qgp3wl7c3jxrakw1k873dwgybfwkhgfj2g8dx1"; + enableSeparateDataOutput = true; + libraryHaskellDepends = [ base ghc text ]; + testHaskellDepends = [ base hspec text ]; + testToolDepends = [ hspec-discover ]; + description = "Syntax highlighter for Haskell using lexer of GHC itself"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "ghc-tcplugins-extra" = callPackage ({ mkDerivation, base, ghc }: mkDerivation { @@ -84852,18 +85715,44 @@ self: { license = stdenv.lib.licenses.lgpl21; }) {gtk3 = pkgs.gnome3.gtk;}; + "gi-gtk_3_0_26" = callPackage + ({ mkDerivation, base, bytestring, Cabal, containers, gi-atk + , gi-cairo, gi-gdk, gi-gdkpixbuf, gi-gio, gi-glib, gi-gobject + , gi-pango, gtk3, haskell-gi, haskell-gi-base + , haskell-gi-overloading, text, transformers + }: + mkDerivation { + pname = "gi-gtk"; + version = "3.0.26"; + sha256 = "1b0sfjcjxm0kzqyhrvl4wbxqa7zdpwv13xzrpb1k1k9rijjf1anf"; + setupHaskellDepends = [ base Cabal haskell-gi ]; + libraryHaskellDepends = [ + base bytestring containers gi-atk gi-cairo gi-gdk gi-gdkpixbuf + gi-gio gi-glib gi-gobject gi-pango haskell-gi haskell-gi-base + haskell-gi-overloading text transformers + ]; + libraryPkgconfigDepends = [ gtk3 ]; + doHaddock = false; + description = "Gtk bindings"; + license = stdenv.lib.licenses.lgpl21; + hydraPlatforms = stdenv.lib.platforms.none; + }) {gtk3 = pkgs.gnome3.gtk;}; + "gi-gtk-declarative" = callPackage - ({ mkDerivation, base, gi-gobject, gi-gtk, haskell-gi - , haskell-gi-base, haskell-gi-overloading, mtl, text - , unordered-containers + ({ mkDerivation, base, criterion, gi-gdk, gi-glib, gi-gobject + , gi-gtk, haskell-gi, haskell-gi-base, haskell-gi-overloading, mtl + , random, text, unordered-containers, vector }: mkDerivation { pname = "gi-gtk-declarative"; - version = "0.1.0"; - sha256 = "1yqvqbhlgbpq5s77fvqi8f644i059gg64xdkgwr4ka6zdz4fhiaf"; + version = "0.2.0"; + sha256 = "0spp225x4acrm96gr0i1jqlhmdq52xqin6h0mma2gvjh025dywyh"; libraryHaskellDepends = [ base gi-gobject gi-gtk haskell-gi haskell-gi-base - haskell-gi-overloading mtl text unordered-containers + haskell-gi-overloading mtl text unordered-containers vector + ]; + benchmarkHaskellDepends = [ + base criterion gi-gdk gi-glib gi-gtk random text ]; description = "Declarative GTK+ programming in Haskell"; license = stdenv.lib.licenses.mpl20; @@ -84876,14 +85765,14 @@ self: { }: mkDerivation { pname = "gi-gtk-declarative-app-simple"; - version = "0.1.0"; - sha256 = "157xhfixlf545qzk9v4sav6817fdznxk0kwiin59xn9d3ldp71ak"; + version = "0.2.0"; + sha256 = "19br3alfj0ggsbwp0640pdrjz1dm59g2wv8sb38jznsrni5fb8yx"; libraryHaskellDepends = [ async base gi-gdk gi-glib gi-gobject gi-gtk gi-gtk-declarative haskell-gi haskell-gi-base haskell-gi-overloading pipes pipes-concurrency text ]; - description = "Declarative GTK+ programming in Haskell in the style of [Pux](https://github.com/alexmingoia/purescript-pux)."; + description = "Declarative GTK+ programming in Haskell in the style of Pux"; license = stdenv.lib.licenses.mpl20; }) {}; @@ -84894,8 +85783,8 @@ self: { }: mkDerivation { pname = "gi-gtk-hs"; - version = "0.3.6.2"; - sha256 = "04gksr27nqzx77c8kv2c94ysf1pz3nwhvnxvbz8h7cn4hzvzhb8z"; + version = "0.3.6.3"; + sha256 = "0xnrssnfaz57akrkgpf1cm3d4lg3cmlh0b8yp6w9pdsbp0lld2ay"; libraryHaskellDepends = [ base base-compat containers gi-gdk gi-gdkpixbuf gi-glib gi-gobject gi-gtk haskell-gi-base mtl text transformers @@ -84948,18 +85837,18 @@ self: { }) {gtksourceview3 = pkgs.gnome3.gtksourceview;}; "gi-javascriptcore" = callPackage - ({ mkDerivation, base, bytestring, Cabal, containers, haskell-gi - , haskell-gi-base, haskell-gi-overloading, text, transformers - , webkitgtk + ({ mkDerivation, base, bytestring, Cabal, containers, gi-glib + , gi-gobject, haskell-gi, haskell-gi-base, haskell-gi-overloading + , text, transformers, webkitgtk }: mkDerivation { pname = "gi-javascriptcore"; - version = "4.0.15"; - sha256 = "07dz5kisis93x0ywb207w8nv54bfdgsahq325dyvbfvlgkqrxsh3"; + version = "4.0.16"; + sha256 = "0kihq9sp42k2k9j8qrwgja62i5pzwhc1z1yy6h19n56aikddfc2z"; setupHaskellDepends = [ base Cabal haskell-gi ]; libraryHaskellDepends = [ - base bytestring containers haskell-gi haskell-gi-base - haskell-gi-overloading text transformers + base bytestring containers gi-glib gi-gobject haskell-gi + haskell-gi-base haskell-gi-overloading text transformers ]; libraryPkgconfigDepends = [ webkitgtk ]; doHaddock = false; @@ -85318,18 +86207,19 @@ self: { }) {}; "gingersnap" = callPackage - ({ mkDerivation, aeson, base, bytestring, http-types - , postgresql-simple, resource-pool, snap-core + ({ mkDerivation, aeson, base, bytestring, deepseq, http-types + , postgresql-simple, resource-pool, snap-core, text, transformers + , unordered-containers }: mkDerivation { pname = "gingersnap"; - version = "0.1.1.0"; - sha256 = "0aqb9ikh21q13mnwf6vcg6chv73vphyag62zhkd4mkhbnlpr816i"; + version = "0.2.2.3"; + sha256 = "1w1ip80w9bc5gj0ws6cvk37648267b4fqmh81h2khn7qhdah74k7"; libraryHaskellDepends = [ - aeson base bytestring http-types postgresql-simple resource-pool - snap-core + aeson base bytestring deepseq http-types postgresql-simple + resource-pool snap-core text transformers unordered-containers ]; - description = "snap-core + aeson + postgresql-simple = delicious"; + description = "Tools for consistent and safe JSON APIs with snap-core and postgresql-simple"; license = stdenv.lib.licenses.bsd3; }) {}; @@ -85493,19 +86383,20 @@ self: { , edit-distance, esqueleto, exceptions, fdo-notify, feed, filepath , free, git, gnupg, hinotify, hslogger, http-client , http-client-tls, http-conduit, http-types, IfElse, lsof, magic - , memory, monad-control, monad-logger, mountpoints, mtl, network - , network-info, network-multicast, network-uri, old-locale, openssh - , optparse-applicative, perl, persistent, persistent-sqlite - , persistent-template, process, QuickCheck, random, regex-tdfa - , resourcet, rsync, SafeSemaphore, sandi, securemem, socks, split - , stm, stm-chans, tagsoup, tasty, tasty-hunit, tasty-quickcheck - , tasty-rerun, text, time, torrent, transformers, unix, unix-compat - , unordered-containers, utf8-string, uuid, vector, wget, which + , memory, microlens, monad-control, monad-logger, mountpoints, mtl + , network, network-info, network-multicast, network-uri, old-locale + , openssh, optparse-applicative, perl, persistent + , persistent-sqlite, persistent-template, process, QuickCheck + , random, regex-tdfa, resourcet, rsync, SafeSemaphore, sandi + , securemem, socks, split, stm, stm-chans, tagsoup, tasty + , tasty-hunit, tasty-quickcheck, tasty-rerun, text, time, torrent + , transformers, unix, unix-compat, unordered-containers + , utf8-string, uuid, vector, wget, which }: mkDerivation { pname = "git-annex"; - version = "6.20181011"; - sha256 = "0k18vrk5g9fdlhvklg14fyjk7x9css18i82xzl8wsycjbcq9ncgf"; + version = "7.20181105"; + sha256 = "0jh49bfgsccrvhdgyp1xp5rj0vp9iz8kkmh1x5cmrsjajs8qdpw3"; configureFlags = [ "-fassistant" "-fcryptonite" "-fdbus" "-fdesktopnotify" "-fdns" "-ffeed" "-finotify" "-fpairing" "-fproduction" "-fquvi" "-f-s3" @@ -85524,7 +86415,7 @@ self: { crypto-api cryptonite data-default DAV dbus directory disk-free-space dlist edit-distance esqueleto exceptions fdo-notify feed filepath free hinotify hslogger http-client http-client-tls - http-conduit http-types IfElse magic memory monad-control + http-conduit http-types IfElse magic memory microlens monad-control monad-logger mountpoints mtl network network-info network-multicast network-uri old-locale optparse-applicative persistent persistent-sqlite persistent-template process QuickCheck random @@ -86074,6 +86965,30 @@ self: { license = stdenv.lib.licenses.mit; }) {}; + "github-release_1_2_3" = callPackage + ({ mkDerivation, aeson, base, bytestring, http-client + , http-client-tls, http-types, mime-types, optparse-generic, text + , unordered-containers, uri-templater + }: + mkDerivation { + pname = "github-release"; + version = "1.2.3"; + sha256 = "14jb82gybm2zwri05bqxsibwr29lhghcaj3n0171nbndqs0dyl0y"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + aeson base bytestring http-client http-client-tls http-types + mime-types optparse-generic text unordered-containers uri-templater + ]; + executableHaskellDepends = [ + aeson base bytestring http-client http-client-tls http-types + mime-types optparse-generic text unordered-containers uri-templater + ]; + description = "Upload files to GitHub releases"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "github-tools" = callPackage ({ mkDerivation, base, bytestring, containers, exceptions, github , groom, html, http-client, http-client-tls, monad-parallel @@ -87180,20 +88095,20 @@ self: { }) {}; "gloss-export" = callPackage - ({ mkDerivation, base, GLFW-b, gloss, gloss-rendering, GLUT - , JuicyPixels, OpenGLRaw, vector + ({ mkDerivation, base, directory, filepath, GLFW-b, gloss + , gloss-rendering, GLUT, JuicyPixels, OpenGLRaw, vector }: mkDerivation { pname = "gloss-export"; - version = "0.1.0.0"; - sha256 = "0m5k8zr90wqh6sjgn5c3mrpffwkq8g42qji8ss77l97a2hcv50dq"; + version = "0.1.0.2"; + sha256 = "0i2x1bbygacrgvi9rvmpq0ddi24vh8dza6hisvif708a8yh6plpr"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ base GLFW-b gloss-rendering GLUT JuicyPixels OpenGLRaw vector ]; executableHaskellDepends = [ base gloss ]; - testHaskellDepends = [ base ]; + testHaskellDepends = [ base directory filepath gloss JuicyPixels ]; description = "Export Gloss pictures to png, bmp, tga, tiff, gif and juicy-pixels-image"; license = stdenv.lib.licenses.mit; }) {}; @@ -87829,6 +88744,29 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "godot-haskell" = callPackage + ({ mkDerivation, aeson, ansi-wl-pprint, base, bytestring, c2hs + , casing, colour, containers, lens, linear, mtl, parsec, parsers + , stm, template-haskell, text, unordered-containers, vector + }: + mkDerivation { + pname = "godot-haskell"; + version = "0.1.0.0"; + sha256 = "02nvs84bq4nif235iycjwkxmabvs0avwm2xilpwv8kddv95z1f8i"; + revision = "3"; + editedCabalFile = "0dpvraw31gpzzlsy7j7mv99jvmwhldycll1hnbw2iscb5zs2g409"; + libraryHaskellDepends = [ + aeson ansi-wl-pprint base bytestring casing colour containers lens + linear mtl parsec parsers stm template-haskell text + unordered-containers vector + ]; + libraryToolDepends = [ c2hs ]; + doHaddock = false; + description = "Haskell bindings for the Godot game engine API"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "gofer-prelude" = callPackage ({ mkDerivation, base, ghc-prim }: mkDerivation { @@ -89284,6 +90222,20 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "google-isbn" = callPackage + ({ mkDerivation, aeson, base, bytestring, conduit, conduit-extra + , http-conduit, text + }: + mkDerivation { + pname = "google-isbn"; + version = "1.0.2"; + sha256 = "1vba9czx73b9xqr3cp5gz9r7qp458wdzzb4sqds4hzridchjf3ry"; + libraryHaskellDepends = [ + aeson base bytestring conduit conduit-extra http-conduit text + ]; + license = stdenv.lib.licenses.bsd3; + }) {}; + "google-mail-filters" = callPackage ({ mkDerivation, base, containers, google-search, text, time , xml-conduit @@ -89307,8 +90259,8 @@ self: { }: mkDerivation { pname = "google-maps-geocoding"; - version = "0.4.0.1"; - sha256 = "1icya5sh7psr2m12wdx6a5dq9897lp92gq1skxp6s55sksqvglw8"; + version = "0.4.0.2"; + sha256 = "0q5zack0lcmn8wsksdlmd0vch1lizia9h4sqax7ydx09is39jzxm"; libraryHaskellDepends = [ aeson base google-static-maps http-client servant servant-client text @@ -89434,8 +90386,8 @@ self: { }: mkDerivation { pname = "google-static-maps"; - version = "0.5.0.2"; - sha256 = "05gxk4xnxlshcais8ljzp2wbr93kfi97bjbk2rasj5s2mbvw7rvi"; + version = "0.5.0.3"; + sha256 = "18c4s9nvpwv34djf7m2jq5mdpyjplp1hcxrfrp5cdyglk6j0j13b"; libraryHaskellDepends = [ aeson base base64-bytestring bytedump bytestring cryptonite double-conversion http-client JuicyPixels memory network-uri @@ -90570,8 +91522,8 @@ self: { ({ mkDerivation, base, containers, json, text }: mkDerivation { pname = "graphql-w-persistent"; - version = "0.1.0.4"; - sha256 = "1ivdh8l6snb2d3g1f7fb46fd9fz6ib2i94b1596pmp38hryl8in0"; + version = "0.3.0.0"; + sha256 = "11mf250vg2yvknnvbsc7h7m5xfxfsm4mia7by735ndhxzxb65jy9"; libraryHaskellDepends = [ base containers json text ]; description = "Haskell GraphQL query parser-interpreter-data processor"; license = stdenv.lib.licenses.isc; @@ -91491,6 +92443,22 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "gscholar-rss" = callPackage + ({ mkDerivation, base, feed, http-conduit, scalpel-core, text, uri + }: + mkDerivation { + pname = "gscholar-rss"; + version = "0.1.0.0"; + sha256 = "17ki6wvrjvxl77zjpkxjq8yr4ljdrwlszrzwdv3arlq2c0mgl7yy"; + isLibrary = false; + isExecutable = true; + executableHaskellDepends = [ + base feed http-conduit scalpel-core text uri + ]; + description = "scrapes google scholar, provides RSS feed"; + license = stdenv.lib.licenses.gpl3; + }) {}; + "gsl-random" = callPackage ({ mkDerivation, base, Cabal, vector }: mkDerivation { @@ -91554,8 +92522,8 @@ self: { }: mkDerivation { pname = "gssapi-wai"; - version = "0.1.2.2"; - sha256 = "1fkgsdc4nkxwkhnz3b8rz6zx8jq6325mgniy5h5s3cr7k0kwnv0s"; + version = "0.1.2.3"; + sha256 = "08c47zwy4wh1cga5l4brg7dm5nkl7xcsq2rvwdzvmzzxyfg3nnr7"; libraryHaskellDepends = [ base base64-bytestring bytestring case-insensitive gssapi http-types vault wai wai-extra @@ -92045,8 +93013,8 @@ self: { }) {gtk-mac-integration-gtk3 = null;}; "gtkglext" = callPackage - ({ mkDerivation, base, Cabal, glib, gtk, gtk2hs-buildtools - , gtkglext, pango + ({ mkDerivation, base, Cabal, glib, gtk, gtk2, gtk2hs-buildtools + , gtkglext, libGLU, libICE, libSM, libXmu, libXt, pango }: mkDerivation { pname = "gtkglext"; @@ -92055,12 +93023,16 @@ self: { enableSeparateDataOutput = true; setupHaskellDepends = [ base Cabal gtk2hs-buildtools ]; libraryHaskellDepends = [ base glib gtk pango ]; + librarySystemDepends = [ gtk2 libGLU libICE libSM libXmu libXt ]; libraryPkgconfigDepends = [ gtkglext ]; libraryToolDepends = [ gtk2hs-buildtools ]; description = "Binding to the GTK+ OpenGL Extension"; license = stdenv.lib.licenses.lgpl21; hydraPlatforms = stdenv.lib.platforms.none; - }) {inherit (pkgs.gnome2) gtkglext;}; + }) {inherit (pkgs) gtk2; inherit (pkgs.gnome2) gtkglext; + inherit (pkgs) libGLU; inherit (pkgs.xorg) libICE; + inherit (pkgs.xorg) libSM; inherit (pkgs.xorg) libXmu; + inherit (pkgs.xorg) libXt;}; "gtkimageview" = callPackage ({ mkDerivation, array, base, containers, glib, gtk @@ -93543,8 +94515,8 @@ self: { }: mkDerivation { pname = "hackage-whatsnew"; - version = "0.1.1"; - sha256 = "140qsl0aqw2zg246inijifvcddmirba613as0hrg11hkd52f6fhr"; + version = "0.1.2"; + sha256 = "19nk01jqfirvr8c3wy6pacq32v5lzxi735r8i6d23d0vwjfmqxnk"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ @@ -94005,8 +94977,8 @@ self: { }: mkDerivation { pname = "hadolint"; - version = "1.13.0"; - sha256 = "1z5qaxslshd1adkhqcpx8m8fs8d3dw4vwbwvsqcpm7gis63qhbqg"; + version = "1.15.0"; + sha256 = "13xpbwnh6xs3lj6vgqanww3ipz8bsfh3q305rkrb7kgl338nqgsm"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -95403,24 +96375,27 @@ self: { "hapistrano" = callPackage ({ mkDerivation, aeson, async, base, directory, filepath , formatting, gitrev, hspec, mtl, optparse-applicative, path - , path-io, process, stm, temporary, time, transformers, yaml + , path-io, process, QuickCheck, stm, temporary, time, transformers + , yaml }: mkDerivation { pname = "hapistrano"; - version = "0.3.6.1"; - sha256 = "0g0i0n952zjvysjrsp4srhqgrq5fyy7kdinixsxazpccf01f229y"; + version = "0.3.7.0"; + sha256 = "16d1y3dwbvj76b1yyghvwi4f7wak1dv6l07ymknrbi42ks0w9041"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; libraryHaskellDepends = [ - base filepath formatting gitrev mtl path process time transformers + aeson base filepath formatting gitrev mtl path process time + transformers ]; executableHaskellDepends = [ aeson async base formatting gitrev optparse-applicative path path-io stm yaml ]; testHaskellDepends = [ - base directory filepath hspec mtl path path-io process temporary + base directory filepath hspec mtl path path-io process QuickCheck + temporary ]; description = "A deployment library for Haskell applications"; license = stdenv.lib.licenses.mit; @@ -97595,6 +98570,7 @@ self: { testHaskellDepends = [ base eigen vector ]; description = "Some utility functions for haskell-eigen library"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "haskell-exp-parser" = callPackage @@ -97937,7 +98913,7 @@ self: { license = stdenv.lib.licenses.mit; }) {}; - "haskell-lsp_0_8_0_0" = callPackage + "haskell-lsp_0_8_0_1" = callPackage ({ mkDerivation, aeson, base, bytestring, containers, data-default , directory, filepath, hashable, haskell-lsp-types, hslogger, hspec , lens, mtl, network-uri, parsec, sorted-list, stm, text, time @@ -97945,8 +98921,8 @@ self: { }: mkDerivation { pname = "haskell-lsp"; - version = "0.8.0.0"; - sha256 = "04mihj4538pys6v4m3dwijfzcpsv52jizm416rnnwc88gr8q6wkk"; + version = "0.8.0.1"; + sha256 = "1lvrqxp6v5xvha88l8r6n86ydvlszzxmi7fazvjxz4bixy9zvw8q"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -98005,15 +98981,15 @@ self: { license = stdenv.lib.licenses.mit; }) {}; - "haskell-lsp-types_0_8_0_0" = callPackage + "haskell-lsp-types_0_8_0_1" = callPackage ({ mkDerivation, aeson, base, bytestring, data-default, filepath , hashable, lens, network-uri, scientific, text , unordered-containers }: mkDerivation { pname = "haskell-lsp-types"; - version = "0.8.0.0"; - sha256 = "11dm7v9rvfig6m40m0np7cs5cfaawwpw67c445dz15vls5pri71n"; + version = "0.8.0.1"; + sha256 = "0czh6fqrzzp5xkawwiia5n437pmch41rnkp166lpvglfqg4gx8y8"; libraryHaskellDepends = [ aeson base bytestring data-default filepath hashable lens network-uri scientific text unordered-containers @@ -98105,8 +99081,8 @@ self: { }: mkDerivation { pname = "haskell-names"; - version = "0.9.3"; - sha256 = "1gr5sxjjkf7faiyc4y1sbiv06c5fiz7w5s8sxz7hh5k54w8nhs4c"; + version = "0.9.4"; + sha256 = "0dbf5rxysm57jn018wd3dfz3m621n0347mbpgv7q2yb77cwrlg8y"; enableSeparateDataOutput = true; libraryHaskellDepends = [ aeson base bytestring containers data-lens-light filepath @@ -98571,6 +99547,8 @@ self: { pname = "haskell-src-meta"; version = "0.8.0.3"; sha256 = "08jq156zv4m0fjq6712n99c1jwxnpa6kj6sq8ch0r1l0a1ay6ww4"; + revision = "2"; + editedCabalFile = "0dp5v0yd0wgijzaggr22glgjswpa65hy84h8awdzd9d78g2fjz6c"; libraryHaskellDepends = [ base haskell-src-exts pretty syb template-haskell th-orphans ]; @@ -99782,8 +100760,8 @@ self: { }: mkDerivation { pname = "haskoin-core"; - version = "0.8.1"; - sha256 = "0wlsxxrb4a7dn19412gxkwlayrjzpawkpxxy7mww279i159zl7k8"; + version = "0.8.2"; + sha256 = "1scd87ivzmrf8ar44wkijcgpr40c996dvq5rx1py2bxw0zdd1ibq"; libraryHaskellDepends = [ aeson array base base16-bytestring bytestring cereal conduit containers cryptonite entropy hashable memory mtl murmur3 network @@ -99832,8 +100810,8 @@ self: { }: mkDerivation { pname = "haskoin-node"; - version = "0.9.2"; - sha256 = "1aiqhw7fk6h70ps5svbhhhk577ai0rqk6s4bm00ii4yhnbdrdk60"; + version = "0.9.4"; + sha256 = "1lwlbi5pw9wngmhk6dkyc05ahq1w1a0jxipkf9g5spq7ipfw4v6y"; libraryHaskellDepends = [ base bytestring cereal conduit conduit-extra data-default hashable haskoin-core monad-logger mtl network nqe random resourcet @@ -99895,31 +100873,34 @@ self: { }) {}; "haskoin-store" = callPackage - ({ mkDerivation, aeson, base, bytestring, cereal, conduit - , containers, directory, filepath, haskoin-core, haskoin-node - , hspec, http-types, monad-logger, mtl, network, nqe - , optparse-applicative, random, rocksdb-haskell, rocksdb-query - , scotty, string-conversions, text, time, transformers, unliftio + ({ mkDerivation, aeson, base, binary, bytestring, cereal, conduit + , containers, data-default, directory, filepath, hashable + , haskoin-core, haskoin-node, hspec, http-types, monad-logger, mtl + , network, nqe, optparse-applicative, random, rocksdb-haskell + , rocksdb-query, scotty, string-conversions, text, time + , transformers, unliftio, unordered-containers }: mkDerivation { pname = "haskoin-store"; - version = "0.2.3"; - sha256 = "0ywfmqdwvw07gx4a413i0ffsgrq2gfjgpw8a6f78h6idiw69shkw"; + version = "0.6.2"; + sha256 = "0csb7rhcpc82xq5631i62rsr4s672b0jz8d2fmcga2j3a9di34xb"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ - aeson base bytestring cereal conduit containers haskoin-core - haskoin-node monad-logger mtl network nqe random rocksdb-haskell - rocksdb-query string-conversions text time transformers unliftio + aeson base bytestring cereal conduit containers data-default + hashable haskoin-core haskoin-node monad-logger mtl network nqe + random rocksdb-haskell rocksdb-query string-conversions text time + transformers unliftio unordered-containers ]; executableHaskellDepends = [ - aeson base bytestring conduit directory filepath haskoin-core - haskoin-node http-types monad-logger nqe optparse-applicative - rocksdb-haskell scotty string-conversions text unliftio + aeson base binary bytestring cereal conduit data-default directory + filepath haskoin-core haskoin-node http-types monad-logger nqe + optparse-applicative rocksdb-haskell scotty string-conversions text + transformers unliftio unordered-containers ]; testHaskellDepends = [ - base haskoin-core haskoin-node hspec monad-logger mtl nqe - rocksdb-haskell unliftio + base data-default haskoin-core haskoin-node hspec monad-logger mtl + nqe rocksdb-haskell transformers unliftio unordered-containers ]; description = "Storage and index for Bitcoin and Bitcoin Cash"; license = stdenv.lib.licenses.publicDomain; @@ -100165,6 +101146,272 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "hasktorch" = callPackage + ({ mkDerivation, backprop, base, dimensions, generic-lens + , ghc-typelits-natnormalise, hasktorch-ffi-th, hasktorch-ffi-thc + , hasktorch-indef, hasktorch-signatures-partial, hasktorch-types-th + , hasktorch-types-thc, hspec, microlens-platform, monad-loops, mtl + , QuickCheck, safe-exceptions, singletons, text, time, transformers + }: + mkDerivation { + pname = "hasktorch"; + version = "0.0.1.0"; + sha256 = "10lmas8x4nk7z7phxj1a2bhzjz7qhbmy472f9j584mbagvklfkmc"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + base dimensions hasktorch-ffi-th hasktorch-ffi-thc hasktorch-indef + hasktorch-signatures-partial hasktorch-types-th hasktorch-types-thc + safe-exceptions singletons text + ]; + executableHaskellDepends = [ base ]; + testHaskellDepends = [ + backprop base dimensions generic-lens ghc-typelits-natnormalise + hspec microlens-platform monad-loops mtl QuickCheck singletons time + transformers + ]; + doHaddock = false; + description = "Torch for tensors and neural networks in Haskell"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + + "hasktorch-codegen" = callPackage + ({ mkDerivation, base, containers, directory, hashable, hspec + , hspec-discover, megaparsec, optparse-applicative, pretty-show + , QuickCheck, text, unordered-containers + }: + mkDerivation { + pname = "hasktorch-codegen"; + version = "0.0.1.1"; + sha256 = "0yygx1w7i9mnyxrqzz94vrni5y7rkn92yycax7rqg2r5cds2xb6g"; + revision = "1"; + editedCabalFile = "07y9iwmxyvixbvy3mmyxrk95kh8nycazqzv5449pfx2rvry6m6ph"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + base containers directory hashable megaparsec pretty-show text + unordered-containers + ]; + executableHaskellDepends = [ + base optparse-applicative pretty-show + ]; + testHaskellDepends = [ + base containers hspec hspec-discover megaparsec pretty-show + QuickCheck text + ]; + testToolDepends = [ hspec-discover ]; + description = "Code generation tools for Hasktorch"; + license = stdenv.lib.licenses.bsd3; + }) {}; + + "hasktorch-ffi-tests" = callPackage + ({ mkDerivation, base, hasktorch-types-th, hspec, QuickCheck, text + }: + mkDerivation { + pname = "hasktorch-ffi-tests"; + version = "0.0.1.0"; + sha256 = "0850v3wqf0x5hkk5py7k1glh591p59fs1y1kn2jf2giqmy05qzlc"; + revision = "1"; + editedCabalFile = "0jpymss55rj2kmfnp3gv5idlvsg0ckh7pfsm5rmfq9hvisivbv9q"; + libraryHaskellDepends = [ + base hasktorch-types-th hspec QuickCheck text + ]; + description = "Testing library for Hasktorch's FFI bindings"; + license = stdenv.lib.licenses.bsd3; + }) {}; + + "hasktorch-ffi-th" = callPackage + ({ mkDerivation, ATen, base, c2hs, hasktorch-ffi-tests + , hasktorch-types-th, hspec, inline-c, QuickCheck, text + }: + mkDerivation { + pname = "hasktorch-ffi-th"; + version = "0.0.1.0"; + sha256 = "10gdvkwcjjzmrvmlz8vf823ja1jpab1nrph5lq46fcz8nqycsjq0"; + libraryHaskellDepends = [ base hasktorch-types-th inline-c text ]; + librarySystemDepends = [ ATen ]; + libraryToolDepends = [ c2hs ]; + testHaskellDepends = [ + base hasktorch-ffi-tests hasktorch-types-th hspec QuickCheck text + ]; + description = "Bindings to Torch"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {ATen = null;}; + + "hasktorch-ffi-thc" = callPackage + ({ mkDerivation, ATen, base, c2hs, hasktorch-ffi-tests + , hasktorch-ffi-th, hasktorch-types-th, hasktorch-types-thc, hspec + , inline-c, QuickCheck, text + }: + mkDerivation { + pname = "hasktorch-ffi-thc"; + version = "0.0.1.0"; + sha256 = "0l3xvhdyn2dzw999fbhihl20s3q01r5vp247d0rh27zvyszg7l3y"; + libraryHaskellDepends = [ + base hasktorch-types-th hasktorch-types-thc inline-c text + ]; + librarySystemDepends = [ ATen ]; + libraryToolDepends = [ c2hs ]; + testHaskellDepends = [ + base hasktorch-ffi-tests hasktorch-ffi-th hasktorch-types-th + hasktorch-types-thc hspec QuickCheck text + ]; + description = "Bindings to Cutorch"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {ATen = null;}; + + "hasktorch-indef" = callPackage + ({ mkDerivation, backprop, base, containers, deepseq, dimensions + , ghc-typelits-natnormalise, hasktorch-ffi-th, hasktorch-signatures + , hasktorch-signatures-partial, hasktorch-signatures-support + , hasktorch-types-th, hspec, managed, mtl, QuickCheck + , safe-exceptions, singletons, text, transformers, vector + }: + mkDerivation { + pname = "hasktorch-indef"; + version = "0.0.1.0"; + sha256 = "0xmz7jid3sg3d2b4q1051fs7g0fljgvqxqwhzhd4g85fx7zr5nk3"; + libraryHaskellDepends = [ + backprop base containers deepseq dimensions + ghc-typelits-natnormalise hasktorch-ffi-th hasktorch-signatures + hasktorch-signatures-partial hasktorch-signatures-support + hasktorch-types-th managed mtl safe-exceptions singletons text + transformers vector + ]; + testHaskellDepends = [ + backprop base dimensions ghc-typelits-natnormalise hasktorch-ffi-th + hasktorch-types-th hspec mtl QuickCheck singletons text + transformers + ]; + doHaddock = false; + description = "Core Hasktorch abstractions wrapping FFI bindings"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + + "hasktorch-signatures" = callPackage + ({ mkDerivation, base, hasktorch-ffi-th, hasktorch-ffi-thc + , hasktorch-signatures-partial, hasktorch-signatures-support + , hasktorch-signatures-types, hasktorch-types-th + , hasktorch-types-thc + }: + mkDerivation { + pname = "hasktorch-signatures"; + version = "0.0.1.0"; + sha256 = "1p8c3h0naqcbjxb3jbiss9zgfyg0hj0wcb6qlid6kwy925i4cyk1"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + base hasktorch-signatures-partial hasktorch-signatures-support + hasktorch-signatures-types hasktorch-types-th hasktorch-types-thc + ]; + executableHaskellDepends = [ + base hasktorch-ffi-th hasktorch-ffi-thc hasktorch-types-th + hasktorch-types-thc + ]; + doHaddock = false; + description = "Backpack signatures for Tensor operations"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + + "hasktorch-signatures-partial" = callPackage + ({ mkDerivation, base, hasktorch-signatures-types + , hasktorch-types-th + }: + mkDerivation { + pname = "hasktorch-signatures-partial"; + version = "0.0.1.0"; + sha256 = "12dc5i4818j4q09mdshygz16zq1zyp32k6c1imgp9dl6bl4l05ss"; + libraryHaskellDepends = [ + base hasktorch-signatures-types hasktorch-types-th + ]; + description = "Functions to partially satisfy tensor signatures"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + + "hasktorch-signatures-support" = callPackage + ({ mkDerivation, base, hasktorch-signatures-types + , hasktorch-types-th + }: + mkDerivation { + pname = "hasktorch-signatures-support"; + version = "0.0.1.0"; + sha256 = "1vfmpsmgak4ifhpqh15ycf01p8l3a5qas3m7lkg09y8mqimwq5hh"; + libraryHaskellDepends = [ + base hasktorch-signatures-types hasktorch-types-th + ]; + doHaddock = false; + description = "Signatures for support tensors in hasktorch"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + + "hasktorch-signatures-types" = callPackage + ({ mkDerivation, base, deepseq }: + mkDerivation { + pname = "hasktorch-signatures-types"; + version = "0.0.1.0"; + sha256 = "0zaa0ihgbsiwqla46dixmxki75miy5dz91agvvd147rmr2khx1j2"; + revision = "1"; + editedCabalFile = "0da2sv2cahv05cymh4285s35y4b6snrab62zaibnnqbd0nk55qka"; + libraryHaskellDepends = [ base deepseq ]; + doHaddock = false; + description = "Core types for Hasktorch backpack signatures"; + license = stdenv.lib.licenses.bsd3; + }) {}; + + "hasktorch-types-th" = callPackage + ({ mkDerivation, base, c2hs, inline-c }: + mkDerivation { + pname = "hasktorch-types-th"; + version = "0.0.1.0"; + sha256 = "0irlf1lvadnr3j3zjakvkvrwdw8gpg5smk69w9l54idwsi6yvhdd"; + revision = "1"; + editedCabalFile = "0zgz7l8nawpjrc4p43xxfh9brl0mpszdxgahsn9977q5z08h4wnd"; + libraryHaskellDepends = [ base inline-c ]; + libraryToolDepends = [ c2hs ]; + description = "C-types for Torch"; + license = stdenv.lib.licenses.bsd3; + }) {}; + + "hasktorch-types-thc" = callPackage + ({ mkDerivation, base, c2hs, hasktorch-types-th, inline-c }: + mkDerivation { + pname = "hasktorch-types-thc"; + version = "0.0.1.0"; + sha256 = "06jxjn9s34myy4v8ad42xqmkyad5qraj99a3vpcxfagjxwcn4hbd"; + libraryHaskellDepends = [ base hasktorch-types-th inline-c ]; + libraryToolDepends = [ c2hs ]; + description = "C-types for Cutorch"; + license = stdenv.lib.licenses.bsd3; + }) {}; + + "hasktorch-zoo" = callPackage + ({ mkDerivation, backprop, base, deepseq, dimensions, directory + , filepath, generic-lens, ghc-typelits-natnormalise, hashable + , hasktorch, JuicyPixels, microlens, mtl, mwc-random, primitive + , safe-exceptions, singletons, transformers, vector + }: + mkDerivation { + pname = "hasktorch-zoo"; + version = "0.0.1.0"; + sha256 = "1cpk2q1m68y7wljaki1d4a4y45hqh34ia8r6zfw0b62f9b6zihjm"; + libraryHaskellDepends = [ + backprop base deepseq dimensions directory filepath generic-lens + ghc-typelits-natnormalise hashable hasktorch JuicyPixels microlens + mtl mwc-random primitive safe-exceptions singletons transformers + vector + ]; + description = "Neural architectures in hasktorch"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "haskus-binary" = callPackage ({ mkDerivation, base, bytestring, cereal, criterion, haskus-utils , mtl, QuickCheck, tasty, tasty-quickcheck @@ -100213,8 +101460,8 @@ self: { }: mkDerivation { pname = "haskus-utils"; - version = "1.0"; - sha256 = "1pfjarir86c2sxjh8l0jc7z5acsz8slcwb7imjdxf3dsdiy8swwd"; + version = "1.3"; + sha256 = "0gcwnhh3s3cmn7rwd31rs9rqmdpdhwk1la1pf56pcr10dy5iqbs4"; libraryHaskellDepends = [ base containers extra file-embed haskus-utils-data haskus-utils-types haskus-utils-variant list-t mtl @@ -100233,8 +101480,10 @@ self: { }: mkDerivation { pname = "haskus-utils-data"; - version = "1.0"; - sha256 = "007ykjinkxr9kdrk7hl81zndpan60b5l51m32nlj2xv2pjm326z4"; + version = "1.1"; + sha256 = "1001apph6i956rkb6dpfhg8cgk870s44jgaaiv8ccxivkv45y7di"; + revision = "2"; + editedCabalFile = "0ahwmqlbpvgsd6c5rzq97q00ygsw69k4hvs46f5v20100cdj3496"; libraryHaskellDepends = [ base containers extra haskus-utils-types mtl recursion-schemes transformers @@ -100247,23 +101496,27 @@ self: { ({ mkDerivation, base }: mkDerivation { pname = "haskus-utils-types"; - version = "1.0"; - sha256 = "1rxnaw53vfmi3gv8h7j6vw4y4xxnqzwaaasd6x22fm7fzc5q64vf"; + version = "1.3"; + sha256 = "06zfc5ivj7zx1c6inc3xkw9b3p62b2x7dr24fp1s59c9yfrihg1a"; libraryHaskellDepends = [ base ]; description = "Haskus utility modules"; license = stdenv.lib.licenses.bsd3; }) {}; "haskus-utils-variant" = callPackage - ({ mkDerivation, base, haskus-utils-data, haskus-utils-types }: + ({ mkDerivation, base, haskus-utils-data, haskus-utils-types, tasty + , tasty-quickcheck, template-haskell, transformers + }: mkDerivation { pname = "haskus-utils-variant"; - version = "1.0"; - sha256 = "1kkqngvzifxps0hhp49syh2w4an3y4s4nvp3qbh3p00h9dw3hmsn"; + version = "2.4"; + sha256 = "13yqyz1jb4qkdzjxwkpc9s2636disxldja49wmah7h71kd2sqn9r"; libraryHaskellDepends = [ - base haskus-utils-data haskus-utils-types + base haskus-utils-data haskus-utils-types template-haskell + transformers ]; - description = "Haskus utility modules"; + testHaskellDepends = [ base tasty tasty-quickcheck ]; + description = "Variant and EADT"; license = stdenv.lib.licenses.bsd3; }) {}; @@ -101002,6 +102255,7 @@ self: { ]; description = "A truth table generator for classical propositional logic"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "haven" = callPackage @@ -102510,6 +103764,8 @@ self: { pname = "hedgehog-fn"; version = "0.6"; sha256 = "0xi1y2cv2kkyxav261qaw9a4r4q8ng91187bdwi4rqlpp9zvc0pv"; + revision = "1"; + editedCabalFile = "19v7amg8l6s1gadnya8nxkcbi0vd3wqc7h6gvqvs099qaqm7zbb1"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -102727,17 +103983,18 @@ self: { "heist" = callPackage ({ mkDerivation, aeson, attoparsec, base, bifunctors, blaze-builder - , blaze-html, bytestring, containers, criterion, directory - , directory-tree, dlist, filepath, hashable, HUnit, lens - , lifted-base, map-syntax, monad-control, mtl, process, QuickCheck - , random, statistics, test-framework, test-framework-hunit - , test-framework-quickcheck2, text, time, transformers - , transformers-base, unordered-containers, vector, xmlhtml + , blaze-html, bytestring, containers, criterion + , criterion-measurement, directory, directory-tree, dlist, filepath + , hashable, HUnit, lens, lifted-base, map-syntax, monad-control + , mtl, process, QuickCheck, random, statistics, test-framework + , test-framework-hunit, test-framework-quickcheck2, text, time + , transformers, transformers-base, unordered-containers, vector + , xmlhtml }: mkDerivation { pname = "heist"; - version = "1.1"; - sha256 = "15hdq3i041ph0ry6f9dn6vx2w9hzgkvi9db4p6cy6czwbp53kjbq"; + version = "1.1.0.1"; + sha256 = "1j4h9fwny4hl2m5lgsd257lvm9057fb0hmnaqjw8a9k4hyx7hmqq"; libraryHaskellDepends = [ aeson attoparsec base blaze-builder blaze-html bytestring containers directory directory-tree dlist filepath hashable @@ -102754,10 +104011,11 @@ self: { ]; benchmarkHaskellDepends = [ aeson attoparsec base blaze-builder blaze-html bytestring - containers criterion directory directory-tree dlist filepath - hashable HUnit lifted-base map-syntax monad-control mtl process - random statistics test-framework test-framework-hunit text time - transformers transformers-base unordered-containers vector xmlhtml + containers criterion criterion-measurement directory directory-tree + dlist filepath hashable HUnit lifted-base map-syntax monad-control + mtl process random statistics test-framework test-framework-hunit + text time transformers transformers-base unordered-containers + vector xmlhtml ]; description = "An Haskell template system supporting both HTML5 and XML"; license = stdenv.lib.licenses.bsd3; @@ -103330,6 +104588,7 @@ self: { ]; description = "A command-line manager for delicious kitchen recipes"; license = stdenv.lib.licenses.gpl3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "hero-club-five-tenets" = callPackage @@ -103599,8 +104858,8 @@ self: { }: mkDerivation { pname = "hevm"; - version = "0.17"; - sha256 = "0xp28mm3wxyj3win37nvrjdywkrfzm4l0j441q88bd35vr25yi2k"; + version = "0.21"; + sha256 = "0h3d1b2xdd59d3rl1a9ng1hz2hr3g6n1dpak0a4namjlcfxvwwhd"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; @@ -104010,6 +105269,7 @@ self: { ]; description = "Heyting and Boolean algebras"; license = stdenv.lib.licenses.mpl20; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "hfann" = callPackage @@ -104313,33 +105573,31 @@ self: { "hgeometry" = callPackage ({ mkDerivation, aeson, approximate-equality, array, base , bifunctors, bytestring, colour, containers, contravariant - , criterion, data-clist, deepseq, deepseq-generics, dlist, doctest - , fingertree, fixed-vector, hexpat, hspec, hspec-discover, lens - , linear, mtl, optparse-applicative, parsec, QuickCheck - , quickcheck-instances, random, reflection, semigroupoids - , semigroups, singletons, template-haskell, text, vector, vinyl - , yaml + , criterion, data-clist, deepseq, deepseq-generics, directory + , dlist, doctest, filepath, fingertree, fixed-vector, hexpat, hspec + , hspec-discover, lens, linear, mtl, optparse-applicative, parsec + , profunctors, QuickCheck, quickcheck-instances, random, reflection + , semigroupoids, semigroups, singletons, template-haskell, text + , vector, vinyl, yaml }: mkDerivation { pname = "hgeometry"; - version = "0.7.0.0"; - sha256 = "0c91n42l6pqkdw46snhplvzm8f05x0x5g3b7mgx13ndskcf9vmyz"; - revision = "1"; - editedCabalFile = "1wjwpfiic3jbhg77qm2nzgvybnpk0h3wwpywkpfxz8sv1yhb8pa2"; + version = "0.8.0.0"; + sha256 = "0hypd5936kssw435lcvqj9d7whdzfdfbhvi5hhbi90k5x89xfx6f"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; libraryHaskellDepends = [ aeson base bifunctors bytestring colour containers contravariant data-clist deepseq dlist fingertree fixed-vector hexpat lens linear - mtl parsec QuickCheck quickcheck-instances random reflection - semigroupoids semigroups singletons template-haskell text vector - vinyl yaml + mtl parsec profunctors QuickCheck quickcheck-instances random + reflection semigroupoids semigroups singletons template-haskell + text vector vinyl yaml ]; testHaskellDepends = [ approximate-equality array base bytestring colour containers - data-clist doctest hspec lens linear QuickCheck - quickcheck-instances random semigroups singletons vector vinyl + data-clist directory doctest filepath hspec lens linear QuickCheck + quickcheck-instances random semigroups singletons vector vinyl yaml ]; testToolDepends = [ hspec-discover ]; benchmarkHaskellDepends = [ @@ -104453,8 +105711,8 @@ self: { pname = "hgmp"; version = "0.1.1"; sha256 = "1hisbcpz47x2lbqf8vzwis7qw7xhvx22lv7dcyhm9vsmsh5741dr"; - revision = "2"; - editedCabalFile = "0v318nifmgqq5jg1d5q0jspfgyqp7cfnkz3ikqaz9xjg8inzl8mr"; + revision = "3"; + editedCabalFile = "0z2xbqzyrgm9apy3xl353wgwhbnc3hdb1giw2j6fyvv705fmpb62"; libraryHaskellDepends = [ base ghc-prim integer-gmp ]; testHaskellDepends = [ base QuickCheck ]; description = "Haskell interface to GMP"; @@ -105448,20 +106706,20 @@ self: { "hinterface" = callPackage ({ mkDerivation, array, async, base, binary, bytestring, containers - , cryptonite, exceptions, hspec, lifted-async, lifted-base, memory - , monad-control, monad-logger, mtl, network, QuickCheck, random - , resourcet, safe-exceptions, stm, text, transformers + , cryptonite, deepseq, exceptions, hspec, lifted-async, lifted-base + , memory, monad-control, monad-logger, mtl, network, QuickCheck + , random, resourcet, safe-exceptions, stm, text, transformers , transformers-base, vector }: mkDerivation { pname = "hinterface"; - version = "0.5.0.2"; - sha256 = "1ib8wnpkd8ng6w0wb8hhn1122rqdq4q961b10rvw4jl6bfzkwasb"; + version = "0.7.0"; + sha256 = "1n4w8mwx09i8f1h96p7nqls7r22xscy4z9fviwgivp0y59qfbdsx"; libraryHaskellDepends = [ - array async base binary bytestring containers cryptonite exceptions - lifted-async lifted-base memory monad-control monad-logger mtl - network QuickCheck random resourcet safe-exceptions stm text - transformers transformers-base vector + array async base binary bytestring containers cryptonite deepseq + exceptions lifted-async lifted-base memory monad-control + monad-logger mtl network QuickCheck random resourcet + safe-exceptions stm text transformers transformers-base vector ]; testHaskellDepends = [ async base binary bytestring hspec monad-logger QuickCheck @@ -106005,8 +107263,8 @@ self: { }: mkDerivation { pname = "hjugement"; - version = "2.0.0.20180903"; - sha256 = "0zvgabj0myn5ssfpj8l50z0jwcrqkfsixdhg1wq916y8ay7yi71n"; + version = "2.0.0.20181030"; + sha256 = "063d484ns520prgvb2b1szq33wx569fgbgrzvfrgpfcznra638fi"; libraryHaskellDepends = [ base containers hashable unordered-containers ]; @@ -106144,6 +107402,8 @@ self: { pname = "hledger"; version = "1.11.1"; sha256 = "0cy60ysmydg0ahx6gjmjm97skvjp5a3vgqxsn2l1dp7hk34ac5p9"; + revision = "1"; + editedCabalFile = "1g8jfjsfddpiifgv39gi985lsz8fsysf6qni34b0kb44wpd67pfn"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -106586,8 +107846,8 @@ self: { }: mkDerivation { pname = "hlrdb-core"; - version = "0.1.2.0"; - sha256 = "1j3ds4kkr1ns7y46b3s29bhi63n31ggvcq4mlyp2xafw2z4nbyl3"; + version = "0.1.2.2"; + sha256 = "0qh4p354xzmcd6d6imv9qyflxj9g80rmbdyhf9bscjrqam0dy24b"; libraryHaskellDepends = [ base bytestring hashable hedis lens mtl profunctors random time unordered-containers @@ -106870,17 +108130,17 @@ self: { }) {}; "hmatrix-quadprogpp" = callPackage - ({ mkDerivation, base, hmatrix, quadprog, vector }: + ({ mkDerivation, base, hmatrix, QuadProgpp, vector }: mkDerivation { pname = "hmatrix-quadprogpp"; version = "0.4.0.0"; sha256 = "0bvgph7x5niryn4f1ah6726np2nv8xnrvqn3hbiw8f5m7314iv5l"; libraryHaskellDepends = [ base hmatrix vector ]; - librarySystemDepends = [ quadprog ]; + librarySystemDepends = [ QuadProgpp ]; description = "Bindings to the QuadProg++ quadratic programming library"; license = stdenv.lib.licenses.bsd3; hydraPlatforms = stdenv.lib.platforms.none; - }) {quadprog = null;}; + }) {inherit (pkgs) QuadProgpp;}; "hmatrix-repa" = callPackage ({ mkDerivation, base, hmatrix, repa, vector }: @@ -107163,8 +108423,8 @@ self: { }: mkDerivation { pname = "hmm-hmatrix"; - version = "0.1"; - sha256 = "1ww2hxy9s9d2mywf5v5ka5fac9105ir3frm9vafgw2ydq64rdivx"; + version = "0.1.0.1"; + sha256 = "00fka84m5id19vb08kscr91fivlmxflz99nmziki721bqrgjx0n5"; libraryHaskellDepends = [ array base containers deepseq explicit-exception hmatrix lazy-csv non-empty random semigroups transformers utility-ht @@ -107470,8 +108730,8 @@ self: { }: mkDerivation { pname = "hoauth2"; - version = "1.7.2"; - sha256 = "0klkgr11p8m03ksrad59pqs0czp6hrgmzxynng4zirbmz643plvf"; + version = "1.8.2"; + sha256 = "0bh6ngq9850bxl2m1qpvnanif5nz09k697rw3sk6djqkcw3lv305"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -108470,17 +109730,14 @@ self: { }) {}; "hopenssl" = callPackage - ({ mkDerivation, base, bytestring, Cabal, cabal-doctest, doctest - , HUnit, openssl - }: + ({ mkDerivation, base, bytestring, HUnit, openssl }: mkDerivation { pname = "hopenssl"; - version = "2.2.1"; - sha256 = "1pxbs1k8sizvvz1nn1zv2i5grn0w11s9g09z07w5f80kbz0slcbh"; - setupHaskellDepends = [ base Cabal cabal-doctest ]; + version = "2.2.2"; + sha256 = "0k589mi4sny88jaqxcqd0jgy6kmbzslxk6y1bk8xkvq73nvjxnjl"; libraryHaskellDepends = [ base bytestring ]; librarySystemDepends = [ openssl ]; - testHaskellDepends = [ base doctest HUnit ]; + testHaskellDepends = [ base HUnit ]; description = "FFI Bindings to OpenSSL's EVP Digest Interface"; license = stdenv.lib.licenses.bsd3; maintainers = with stdenv.lib.maintainers; [ peti ]; @@ -109072,7 +110329,7 @@ self: { license = stdenv.lib.licenses.mit; }) {}; - "hpack_0_31_0" = callPackage + "hpack_0_31_1" = callPackage ({ mkDerivation, aeson, base, bifunctors, bytestring, Cabal , containers, cryptonite, deepseq, directory, filepath, Glob, hspec , hspec-discover, http-client, http-client-tls, http-types, HUnit @@ -109082,8 +110339,8 @@ self: { }: mkDerivation { pname = "hpack"; - version = "0.31.0"; - sha256 = "0lh60zqjzbjq0hkdia97swz0g1r3ihj84fph9jq9936fpb7hm1n9"; + version = "0.31.1"; + sha256 = "0fipbmmj4x588z7vh635mizhym9krydfxr49bgaf7xir4fsb4fmc"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -109144,26 +110401,33 @@ self: { }) {}; "hpack-dhall" = callPackage - ({ mkDerivation, aeson, base, dhall, dhall-json, hpack, hspec - , interpolate, megaparsec, mockery, text, transformers + ({ mkDerivation, aeson, aeson-pretty, base, bytestring, Cabal + , dhall, dhall-json, Diff, directory, filepath, hpack, megaparsec + , microlens, optparse-applicative, prettyprinter, tasty + , tasty-golden, text, transformers, utf8-string, yaml }: mkDerivation { pname = "hpack-dhall"; - version = "0.3.0"; - sha256 = "0dplb37npz47cxya1c3dnj6bjcnprjph83yifb08a5qf6vnhcjyh"; - revision = "3"; - editedCabalFile = "1paz90nmir7hrwp9yf2aair14gyiw8ql7f9vj2ry8r7q00xbpfv2"; - isLibrary = false; + version = "0.5.0"; + sha256 = "0nqvcs9ch2knlllb0r0j0aqwab7h3yxh5iay377gyq8xc0m4l8w6"; + isLibrary = true; isExecutable = true; + libraryHaskellDepends = [ + aeson aeson-pretty base bytestring dhall dhall-json filepath hpack + megaparsec microlens prettyprinter text transformers yaml + ]; executableHaskellDepends = [ - aeson base dhall dhall-json hpack megaparsec text transformers + aeson aeson-pretty base bytestring dhall dhall-json filepath hpack + megaparsec microlens optparse-applicative prettyprinter text + transformers yaml ]; testHaskellDepends = [ - aeson base dhall dhall-json hpack hspec interpolate megaparsec - mockery text transformers + aeson aeson-pretty base bytestring Cabal dhall dhall-json Diff + directory filepath hpack megaparsec microlens prettyprinter tasty + tasty-golden text transformers utf8-string yaml ]; - description = "Dhall support for Hpack"; - license = stdenv.lib.licenses.publicDomain; + description = "hpack's dhalling"; + license = stdenv.lib.licenses.bsd3; hydraPlatforms = stdenv.lib.platforms.none; }) {}; @@ -110636,8 +111900,8 @@ self: { }: mkDerivation { pname = "hs2ats"; - version = "0.3.0.4"; - sha256 = "1mqm4yblv22368v01xq59ppi4ifjpqlswfirm6n42ckb47xhmy09"; + version = "0.5.0.0"; + sha256 = "0ga90mkz11iis5knd51dqpqd4qyj6fwl15nbdbwzlynpk0wsdsga"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -110716,6 +111980,18 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "hsPID" = callPackage + ({ mkDerivation, base, HUnit, lens }: + mkDerivation { + pname = "hsPID"; + version = "0.1"; + sha256 = "16ks8pvpd0rcw11zinzlldv21i6mbcbrnnq3j9z3vmcjpd25wzim"; + libraryHaskellDepends = [ base lens ]; + testHaskellDepends = [ base HUnit lens ]; + description = "PID control loop"; + license = stdenv.lib.licenses.lgpl3; + }) {}; + "hsSqlite3" = callPackage ({ mkDerivation, base, bindings-sqlite3, bytestring, mtl , utf8-string @@ -110944,6 +112220,7 @@ self: { testHaskellDepends = [ base tasty tasty-hspec ]; description = "A preprocessor that helps with writing Haskell bindings to C code"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "hsc3" = callPackage @@ -111371,6 +112648,87 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "hschema" = callPackage + ({ mkDerivation, base, comonad, contravariant, free, hashable + , invariant, lens, mtl, natural-transformation, profunctors, text + , unordered-containers, vector + }: + mkDerivation { + pname = "hschema"; + version = "0.0.1.0"; + sha256 = "0dm16r432rpk9r1a7nlwwbqi2sy9yg2z9w76s7wy1k67pmx19fmz"; + libraryHaskellDepends = [ + base comonad contravariant free hashable invariant lens mtl + natural-transformation profunctors text unordered-containers vector + ]; + description = "Describe schemas for your Haskell data types"; + license = stdenv.lib.licenses.lgpl3; + }) {}; + + "hschema-aeson" = callPackage + ({ mkDerivation, aeson, base, bytestring, comonad, contravariant + , convertible, directory, free, hschema, hschema-prettyprinter + , hschema-quickcheck, hspec, lens, mtl, natural-transformation + , prettyprinter, prettyprinter-ansi-terminal, QuickCheck + , quickcheck-instances, scientific, text, time + , unordered-containers, vector + }: + mkDerivation { + pname = "hschema-aeson"; + version = "0.0.1.0"; + sha256 = "1kq50rqmlhbh2ssly32gv5r6d6z4ly63hkl4lhvq0a153i7w387z"; + libraryHaskellDepends = [ + aeson base comonad contravariant free hschema hschema-prettyprinter + hschema-quickcheck lens mtl natural-transformation prettyprinter + prettyprinter-ansi-terminal QuickCheck quickcheck-instances + scientific text time unordered-containers vector + ]; + testHaskellDepends = [ + aeson base bytestring comonad contravariant convertible directory + free hschema hschema-prettyprinter hschema-quickcheck hspec lens + mtl natural-transformation prettyprinter + prettyprinter-ansi-terminal QuickCheck quickcheck-instances + scientific text time unordered-containers vector + ]; + description = "Describe schemas for your Haskell data types"; + license = stdenv.lib.licenses.lgpl3; + }) {}; + + "hschema-prettyprinter" = callPackage + ({ mkDerivation, base, contravariant, free, hschema, lens, mtl + , natural-transformation, prettyprinter + , prettyprinter-ansi-terminal, text, unordered-containers, vector + }: + mkDerivation { + pname = "hschema-prettyprinter"; + version = "0.0.1.0"; + sha256 = "064czqn3h5ql4bknagj2qp1m3pr1fcngpjmmy34dhxp0pg5xgvsw"; + libraryHaskellDepends = [ + base contravariant free hschema lens mtl natural-transformation + prettyprinter prettyprinter-ansi-terminal text unordered-containers + vector + ]; + description = "Describe schemas for your Haskell data types"; + license = stdenv.lib.licenses.lgpl3; + }) {}; + + "hschema-quickcheck" = callPackage + ({ mkDerivation, base, free, hschema, lens, mtl + , natural-transformation, QuickCheck, quickcheck-instances, text + , unordered-containers, vector + }: + mkDerivation { + pname = "hschema-quickcheck"; + version = "0.0.1.0"; + sha256 = "13hkpcj1cc4qykm8xhkzix29gbil8vz10b3ndivbxq5nk53r11s6"; + libraryHaskellDepends = [ + base free hschema lens mtl natural-transformation QuickCheck + quickcheck-instances text unordered-containers vector + ]; + description = "Describe schemas for your Haskell data types"; + license = stdenv.lib.licenses.lgpl3; + }) {}; + "hsclock" = callPackage ({ mkDerivation, base, cairo, glib, gtk, old-time }: mkDerivation { @@ -111501,8 +112859,8 @@ self: { }: mkDerivation { pname = "hsdev"; - version = "0.3.2.1"; - sha256 = "01sfpd2dsqbbkxq5arb0gzllfyfcmjwcln91v02f5x1f6ksjlpzp"; + version = "0.3.2.2"; + sha256 = "0b4xjkj1qc6mbsp0sn7gqmhys3h39rbfam8qwvhjmgd7d1cbl69p"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -111908,6 +113266,25 @@ self: { license = stdenv.lib.licenses.isc; }) {}; + "hsinstall_2_2" = callPackage + ({ mkDerivation, base, Cabal, directory, filepath, heredoc, process + , safe-exceptions + }: + mkDerivation { + pname = "hsinstall"; + version = "2.2"; + sha256 = "14c98wysvsq4k581s3f5zw44grm6f0wvbmgdda8sshhg7v2059r3"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ base directory filepath ]; + executableHaskellDepends = [ + base Cabal directory filepath heredoc process safe-exceptions + ]; + description = "Install Haskell software"; + license = stdenv.lib.licenses.isc; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "hskeleton" = callPackage ({ mkDerivation, base, Cabal }: mkDerivation { @@ -112556,14 +113933,14 @@ self: { license = stdenv.lib.licenses.mit; }) {}; - "hspec_2_5_8" = callPackage + "hspec_2_6_0" = callPackage ({ mkDerivation, base, hspec-core, hspec-discover , hspec-expectations, QuickCheck }: mkDerivation { pname = "hspec"; - version = "2.5.8"; - sha256 = "061k4r1jlzcnl0mzvk5nvamw1bx36rs2a38958m2hlh2mmfnfnsr"; + version = "2.6.0"; + sha256 = "0qwla0bff2q52v27rxjgcp8g3yw0r2iyggp8ggmmabxkk983db6i"; libraryHaskellDepends = [ base hspec-core hspec-discover hspec-expectations QuickCheck ]; @@ -112614,6 +113991,21 @@ self: { license = stdenv.lib.licenses.mit; }) {}; + "hspec-contrib_0_5_1" = callPackage + ({ mkDerivation, base, hspec, hspec-core, HUnit, QuickCheck }: + mkDerivation { + pname = "hspec-contrib"; + version = "0.5.1"; + sha256 = "0hhzxaa3fxz5mk5qcsrnfr98a7bn3szx2ydgr0x9mbqmm1jg06rc"; + revision = "1"; + editedCabalFile = "0vjmyrsb878914b4khwdy3fcn9n217q8k5xnszlrp7dl1jnbqyi4"; + libraryHaskellDepends = [ base hspec-core HUnit ]; + testHaskellDepends = [ base hspec hspec-core HUnit QuickCheck ]; + description = "Contributed functionality for Hspec"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "hspec-core_2_4_8" = callPackage ({ mkDerivation, ansi-terminal, array, base, call-stack, deepseq , directory, filepath, hspec-expectations, hspec-meta, HUnit @@ -112671,7 +114063,7 @@ self: { license = stdenv.lib.licenses.mit; }) {}; - "hspec-core_2_5_8" = callPackage + "hspec-core_2_6_0" = callPackage ({ mkDerivation, ansi-terminal, array, base, call-stack, clock , deepseq, directory, filepath, hspec-expectations, hspec-meta , HUnit, process, QuickCheck, quickcheck-io, random, setenv @@ -112679,8 +114071,8 @@ self: { }: mkDerivation { pname = "hspec-core"; - version = "2.5.8"; - sha256 = "08y6rhzc2vwmrxzl3bc8iwklkhgzv7x90mf9fnjnddlyaj7wcjg5"; + version = "2.6.0"; + sha256 = "0f3fb6cgfp0yywxi9ii2vzmkrj669nprphcs1piad7bacsk12y6r"; libraryHaskellDepends = [ ansi-terminal array base call-stack clock deepseq directory filepath hspec-expectations HUnit QuickCheck quickcheck-io random @@ -112755,13 +114147,13 @@ self: { license = stdenv.lib.licenses.mit; }) {}; - "hspec-discover_2_5_8" = callPackage + "hspec-discover_2_6_0" = callPackage ({ mkDerivation, base, directory, filepath, hspec-meta, QuickCheck }: mkDerivation { pname = "hspec-discover"; - version = "2.5.8"; - sha256 = "001i0ldxi88qcww2hh3mkdr6svw4kj23lf65camk9bgn5zwvq5aj"; + version = "2.6.0"; + sha256 = "17q5g5z7pylw8ghx1jbwk5qrafcg2cblpckvkwla1y3dzry43nc2"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ base directory filepath ]; @@ -113723,6 +115115,29 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {seccomp = null;}; + "hssh" = callPackage + ({ mkDerivation, async, base, bytestring, cereal, containers + , cryptonite, data-default, memory, stm, tasty, tasty-hunit + , tasty-quickcheck + }: + mkDerivation { + pname = "hssh"; + version = "0.1.0.0"; + sha256 = "00g87418fhzcxf1xmrj9s40g6i1cgjx65ki027sqgkss49w1w6ig"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + async base bytestring cereal containers cryptonite data-default + memory stm + ]; + testHaskellDepends = [ + async base bytestring cereal containers cryptonite data-default + memory stm tasty tasty-hunit tasty-quickcheck + ]; + description = "SSH protocol implementation"; + license = stdenv.lib.licenses.mit; + }) {}; + "hsshellscript" = callPackage ({ mkDerivation, base, c2hs, directory, parsec, random, unix }: mkDerivation { @@ -115002,6 +116417,26 @@ self: { license = stdenv.lib.licenses.mit; }) {}; + "http-client-openssl_0_3_0_0" = callPackage + ({ mkDerivation, base, bytestring, HsOpenSSL, hspec, http-client + , http-types, network + }: + mkDerivation { + pname = "http-client-openssl"; + version = "0.3.0.0"; + sha256 = "0y7d1bp045mj1lnbd74a1v4viv5g5awivdhbycq75hnvqf2n50vl"; + libraryHaskellDepends = [ + base bytestring HsOpenSSL http-client network + ]; + testHaskellDepends = [ + base HsOpenSSL hspec http-client http-types + ]; + doCheck = false; + description = "http-client backend using the OpenSSL library"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "http-client-request-modifiers" = callPackage ({ mkDerivation, base, bytestring, exceptions, http-client , http-media, http-types, network, network-uri @@ -115738,29 +117173,29 @@ self: { "http2" = callPackage ({ mkDerivation, aeson, aeson-pretty, array, base, bytestring - , bytestring-builder, case-insensitive, containers, criterion - , directory, doctest, filepath, Glob, hashtables, heaps, hex, hspec - , mwc-random, psqueues, stm, text, unordered-containers, vector - , word8 + , case-insensitive, containers, criterion, directory, doctest + , filepath, Glob, heaps, hex, hspec, mwc-random, network-byte-order + , psqueues, stm, text, unordered-containers, vector, word8 }: mkDerivation { pname = "http2"; - version = "1.6.3"; - sha256 = "0hww0rfsv6lqx62qzycbcqy5q6rh9k09qkyjkdm5m1sp1z50wqk1"; + version = "1.6.4"; + sha256 = "0rhy7z67bmbb15kxq9fmpgvqmc3npsbf1ym04cg07ymq9ihxvjig"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ - array base bytestring bytestring-builder case-insensitive - containers psqueues stm + array base bytestring case-insensitive containers + network-byte-order psqueues stm ]; testHaskellDepends = [ - aeson aeson-pretty array base bytestring bytestring-builder - case-insensitive containers directory doctest filepath Glob hex - hspec psqueues stm text unordered-containers vector word8 + aeson aeson-pretty array base bytestring case-insensitive + containers directory doctest filepath Glob hex hspec + network-byte-order psqueues stm text unordered-containers vector + word8 ]; benchmarkHaskellDepends = [ - array base bytestring case-insensitive containers criterion - hashtables heaps mwc-random psqueues stm + array base bytestring case-insensitive containers criterion heaps + mwc-random network-byte-order psqueues stm ]; description = "HTTP/2 library including frames, priority queues and HPACK"; license = stdenv.lib.licenses.bsd3; @@ -115772,10 +117207,8 @@ self: { }: mkDerivation { pname = "http2-client"; - version = "0.8.0.1"; - sha256 = "055x0cscrd0idfda4ak48dagkmqkgj1zg29mz4yxrdj9vp2n0xd3"; - revision = "1"; - editedCabalFile = "190dhnj34b9xnpf6d3lj5a1fr90k2dy1l1i8505mp49lxzdvzkgc"; + version = "0.8.0.2"; + sha256 = "16m4amw7xq7psvxix76z7g1dvllkfs9pzpnig5rfhbgfvbf5pydw"; libraryHaskellDepends = [ async base bytestring containers deepseq http2 network stm time tls ]; @@ -115790,8 +117223,8 @@ self: { }: mkDerivation { pname = "http2-client-exe"; - version = "0.1.0.0"; - sha256 = "0i8rnq01dlnj7yzf64b7g7cshzsbxc668m9fhc97x3hbdr7b0iad"; + version = "0.1.0.1"; + sha256 = "1z1y52253dybliwplybwd71a1ssmma34zcylv54aj6x7grrj37hm"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ @@ -116801,14 +118234,14 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; - "hw-ip_0_4_1" = callPackage + "hw-ip_0_4_2" = callPackage ({ mkDerivation, attoparsec, base, generic-lens, hedgehog, hspec , hw-bits, hw-hspec-hedgehog, text }: mkDerivation { pname = "hw-ip"; - version = "0.4.1"; - sha256 = "0kql3qvav2r0fsppiqa40s95938gfzkal5bkli3rhjiknj3vhbg7"; + version = "0.4.2"; + sha256 = "1jcfj75hlg7szvknw6v13barvcilldzh76jv1rnfyscrfhpdkd2s"; libraryHaskellDepends = [ attoparsec base generic-lens hw-bits text ]; @@ -117059,8 +118492,31 @@ self: { }: mkDerivation { pname = "hw-prim"; - version = "0.6.2.17"; - sha256 = "184ymryvfj3s6bc3igahfyd8k9cqf59vmpb9g3afh8xpicpmmiv6"; + version = "0.6.2.18"; + sha256 = "1sm6rji0vv3ddi4sjp1q8nz271a084xpnv86n0adqzvd7b7sihip"; + libraryHaskellDepends = [ + base bytestring mmap semigroups transformers vector + ]; + testHaskellDepends = [ + base bytestring directory exceptions hedgehog hspec + hw-hspec-hedgehog mmap QuickCheck semigroups transformers vector + ]; + benchmarkHaskellDepends = [ + base bytestring criterion mmap semigroups transformers vector + ]; + description = "Primitive functions and data types"; + license = stdenv.lib.licenses.bsd3; + }) {}; + + "hw-prim_0_6_2_19" = callPackage + ({ mkDerivation, base, bytestring, criterion, directory, exceptions + , hedgehog, hspec, hw-hspec-hedgehog, mmap, QuickCheck, semigroups + , transformers, vector + }: + mkDerivation { + pname = "hw-prim"; + version = "0.6.2.19"; + sha256 = "06d124i6y1kai14yfpwbys3fvpqxf7wrvyhhlihqdvpqfksll1dv"; libraryHaskellDepends = [ base bytestring mmap semigroups transformers vector ]; @@ -117073,6 +118529,7 @@ self: { ]; description = "Primitive functions and data types"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "hw-prim-bits" = callPackage @@ -117194,8 +118651,8 @@ self: { }: mkDerivation { pname = "hw-simd"; - version = "0.1.1.2"; - sha256 = "0jcd6clhcqdmkcvhvf68xldgmx4n1wp333438ypbwk2mwp1q559l"; + version = "0.1.1.3"; + sha256 = "0wryx86ycpcyw1dyp2ks1j0rk7pk6yqihmwsa1sij1pf36qdkbrq"; libraryHaskellDepends = [ base bits-extra bytestring deepseq hw-bits hw-prim hw-rankselect hw-rankselect-base vector @@ -117216,6 +118673,32 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "hw-streams" = callPackage + ({ mkDerivation, base, bytestring, criterion, directory, exceptions + , ghc-prim, hedgehog, hspec, hw-bits, hw-hspec-hedgehog, hw-prim + , mmap, primitive, QuickCheck, semigroups, transformers, vector + }: + mkDerivation { + pname = "hw-streams"; + version = "0.0.0.8"; + sha256 = "08pj20r1is6kyinj60xrl0wz7kcjlcc5xivzrhwmjws5qbscimgw"; + libraryHaskellDepends = [ + base bytestring ghc-prim hw-bits hw-prim mmap primitive semigroups + transformers vector + ]; + testHaskellDepends = [ + base bytestring directory exceptions ghc-prim hedgehog hspec + hw-bits hw-hspec-hedgehog hw-prim mmap primitive QuickCheck + semigroups transformers vector + ]; + benchmarkHaskellDepends = [ + base bytestring criterion ghc-prim hw-bits hw-prim mmap primitive + semigroups transformers vector + ]; + description = "Primitive functions and data types"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "hw-string-parse" = callPackage ({ mkDerivation, base, bytestring, hspec, QuickCheck, vector }: mkDerivation { @@ -118992,8 +120475,8 @@ self: { }: mkDerivation { pname = "idris"; - version = "1.3.0"; - sha256 = "1w5i2z88li4niykwc6yrgxgfp25ll6ih95cip0ri7d8i7ik03c48"; + version = "1.3.1"; + sha256 = "0fn9h58l592j72njwma1ia48h8h87wi2rjqfxs7j2lfmvgfv18fi"; configureFlags = [ "-fcurses" "-fexeconly" "-fffi" "-fgmp" ]; isLibrary = true; isExecutable = true; @@ -119971,6 +121454,18 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "impl" = callPackage + ({ mkDerivation, base, named, template-haskell }: + mkDerivation { + pname = "impl"; + version = "0.1.0.0"; + sha256 = "00l50mrl7g3jzixlj3z2kar61vzb152lnn485b7zdsz4vgqxs1sx"; + libraryHaskellDepends = [ base named template-haskell ]; + doHaddock = false; + description = "Framework for defaulting superclasses"; + license = stdenv.lib.licenses.mit; + }) {}; + "implicit" = callPackage ({ mkDerivation, base, blaze-builder, blaze-markup, blaze-svg , bytestring, bytestring-builder, containers, criterion, deepseq @@ -120855,6 +122350,17 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "initialize" = callPackage + ({ mkDerivation, base }: + mkDerivation { + pname = "initialize"; + version = "0.1.1.0"; + sha256 = "0k3bl5adj512bzqysapnggvf6fmi0hs3mvxkymsh9af7gan8y504"; + libraryHaskellDepends = [ base ]; + description = "Initialization and Deinitialization of 'Storable' values"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "inj" = callPackage ({ mkDerivation }: mkDerivation { @@ -120980,8 +122486,8 @@ self: { }: mkDerivation { pname = "inline-c-cpp"; - version = "0.2.2.1"; - sha256 = "1rk7fmpkmxw9hhwr8df29kadnf0ybnwj64ggdbnsdrpfyhnkisci"; + version = "0.3.0.1"; + sha256 = "00q4f2rv6ny5cnfyfdwqvmngw2w40jfs5zb1x7zs574w4l31g701"; libraryHaskellDepends = [ base inline-c safe-exceptions template-haskell ]; @@ -121627,8 +123133,8 @@ self: { }: mkDerivation { pname = "intero"; - version = "0.1.32"; - sha256 = "0xk693yhq2hkilznjzsszamvg7pg1l0qyb2y17ffr2s966i4pfr0"; + version = "0.1.34"; + sha256 = "02yq6rxg50za2lcsf6hvld5f1ab4q91kmw74j6kngm7921fa8fi3"; isLibrary = false; isExecutable = true; enableSeparateDataOutput = true; @@ -121892,15 +123398,15 @@ self: { license = stdenv.lib.licenses.mit; }) {}; - "intro_0_5_1_0" = callPackage + "intro_0_5_2_1" = callPackage ({ mkDerivation, base, bytestring, containers, deepseq, dlist , extra, hashable, lens, mtl, QuickCheck, safe, text, transformers , unordered-containers, writer-cps-mtl }: mkDerivation { pname = "intro"; - version = "0.5.1.0"; - sha256 = "0gsj5l0vgvpbdw2vwlr9r869jwc08lqbypp24g33dlnd338pjxzs"; + version = "0.5.2.1"; + sha256 = "0i5cpa5jx82nb1gi1wdhgnbmxlb7s4nbya46k6byajf7g50i5qp8"; libraryHaskellDepends = [ base bytestring containers deepseq dlist extra hashable mtl safe text transformers unordered-containers writer-cps-mtl @@ -122014,6 +123520,8 @@ self: { pname = "invariant"; version = "0.5.1"; sha256 = "0aqj7z55632qdg45074kgn9qfdxzb0a2f8lgjzr0l0i4mm2rr37b"; + revision = "1"; + editedCabalFile = "100gsacbpal53khj94m5qs4aq70hbsp4dz4065czfm49ysd4yqq4"; libraryHaskellDepends = [ array base bifunctors comonad containers contravariant ghc-prim profunctors semigroups StateVar stm tagged template-haskell @@ -124147,8 +125655,8 @@ self: { ({ mkDerivation, alex, array, base, happy, pretty }: mkDerivation { pname = "java-adt"; - version = "0.2016.11.28"; - sha256 = "1p4j42nzsbd2dsag2gfnngvbdn5vx9cp8lmli6x05sdywabyckc7"; + version = "0.2018.11.4"; + sha256 = "1pdp7yvq0gpbxw7gp61r5mkrhdiff0cvlxssxzvg770idp46j6p5"; isLibrary = false; isExecutable = true; enableSeparateDataOutput = true; @@ -124566,6 +126074,18 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "jmonkey" = callPackage + ({ mkDerivation, base, casing, free, jmacro }: + mkDerivation { + pname = "jmonkey"; + version = "0.1.0.1"; + sha256 = "1yhmhaa8ykjv3xivd7v10q3zw3pvgf45jk5wsbrr95s2p806n5nf"; + libraryHaskellDepends = [ base casing free jmacro ]; + testHaskellDepends = [ base casing free jmacro ]; + description = "Jmonkey is very restricted but handy EDSL for JavaScript"; + license = stdenv.lib.licenses.mit; + }) {}; + "jni" = callPackage ({ mkDerivation, base, bytestring, choice, constraints, containers , cpphs, deepseq, inline-c, jdk, singletons @@ -125296,6 +126816,26 @@ self: { license = stdenv.lib.licenses.mit; }) {}; + "json-feed_1_0_4" = callPackage + ({ mkDerivation, aeson, base, bytestring, filepath, hspec + , mime-types, network-uri, tagsoup, text, time + }: + mkDerivation { + pname = "json-feed"; + version = "1.0.4"; + sha256 = "07xj9h2zdiyvrib93d99xi179nbzir96yylwkxajpfckfgyi4xmp"; + libraryHaskellDepends = [ + aeson base bytestring mime-types network-uri tagsoup text time + ]; + testHaskellDepends = [ + aeson base bytestring filepath hspec mime-types network-uri tagsoup + text time + ]; + description = "JSON Feed"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "json-fu" = callPackage ({ mkDerivation, aeson, attoparsec, base, bytestring, containers , hashable, hspec, mtl, syb, text, time, unordered-containers @@ -125477,8 +127017,8 @@ self: { pname = "json-rpc-client"; version = "0.2.5.0"; sha256 = "177lrw5m9dxdk6mcay0f92rwyih8q7znwb8m6da6r3zsn30gajak"; - revision = "8"; - editedCabalFile = "04dqdn9gdw5xgkm4cnzsph57xcjc01rm1fdfwcfdzg71mbyf8f7y"; + revision = "9"; + editedCabalFile = "04b65m8lhk2g2d5x5i637ff3wkgvf4z6dhn5x1pizsj9y3aq35zm"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -125523,8 +127063,8 @@ self: { pname = "json-rpc-server"; version = "0.2.6.0"; sha256 = "1xfcxbwri9a5p3xxbc4kvr1kqdnm4c1axd8kgb8dglabffbrk7hn"; - revision = "5"; - editedCabalFile = "0hvkfbgg3jbgs0d2jp5djhpd2qp3q9hs5cr4ds93bc9nyncymyq9"; + revision = "6"; + editedCabalFile = "1rfabr679pk605v141gm0ynbp3l6x87s3ip3wa49lwnpab495mxs"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -125571,8 +127111,8 @@ self: { pname = "json-sop"; version = "0.2.0.3"; sha256 = "0ay2cymy4aar23cixcyqam91bs9x4z0vqiw2k0nvgy9nyqfz2r9h"; - revision = "1"; - editedCabalFile = "1bvmfl6fqdr8fklv8zai5jgzlnv1jf9xy8i656lfz1ys95q9yr48"; + revision = "2"; + editedCabalFile = "1lclvvcfvicr05v2nf1xkf21qry2g2bqjhd7gfhza89d571aq3gp"; libraryHaskellDepends = [ aeson base generics-sop lens-sop tagged text time transformers unordered-containers vector @@ -127791,6 +129331,30 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "kind-apply" = callPackage + ({ mkDerivation, base }: + mkDerivation { + pname = "kind-apply"; + version = "0.1.0.0"; + sha256 = "0n2picf38cxfgsi76372h6d25s5kvc32qw7514b2i4ald6qh8aip"; + libraryHaskellDepends = [ base ]; + description = "Utilities to work with lists of types"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + + "kind-generics" = callPackage + ({ mkDerivation, base, kind-apply }: + mkDerivation { + pname = "kind-generics"; + version = "0.1.0.0"; + sha256 = "1h6pb14b75lphlxzz7q08ihvg2phh082sx6a2zpdk5gwh8qzihpg"; + libraryHaskellDepends = [ base kind-apply ]; + description = "Generic programming in GHC style for arbitrary kinds and GADTs"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "kinds" = callPackage ({ mkDerivation, base }: mkDerivation { @@ -128387,6 +129951,19 @@ self: { license = stdenv.lib.licenses.mit; }) {}; + "lackey_1_0_6" = callPackage + ({ mkDerivation, base, hspec, servant, servant-foreign, text }: + mkDerivation { + pname = "lackey"; + version = "1.0.6"; + sha256 = "1z8ipsf78l57jbkcyhjfwbgvj5gmna46x1jvcrin01rpg8xy97q4"; + libraryHaskellDepends = [ base servant servant-foreign text ]; + testHaskellDepends = [ base hspec servant servant-foreign text ]; + description = "Generate Ruby clients from Servant APIs"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "lacroix" = callPackage ({ mkDerivation, base }: mkDerivation { @@ -128657,8 +130234,8 @@ self: { }: mkDerivation { pname = "lambdabot"; - version = "5.1.0.2"; - sha256 = "1nzjlxyzrri8zw67flqn1arz10mgbmyglhvf6pg4r8w78iwg5nk3"; + version = "5.1.0.4"; + sha256 = "1pywangzqf85pqhh5sn10vpk0wrd7ff5p29jrsi6sxdz5lyb7svk"; isLibrary = false; isExecutable = true; enableSeparateDataOutput = true; @@ -128682,8 +130259,8 @@ self: { }: mkDerivation { pname = "lambdabot-core"; - version = "5.1.0.2"; - sha256 = "1n0cqkbiadc169vq7pj5zwvi3yay6db60q8pdk4kci0s9clz4161"; + version = "5.1.0.4"; + sha256 = "1cnp0w47fp0s1zlyb0d90xj5ynwfmlnzm5inc5lhbichwgqcwfzk"; libraryHaskellDepends = [ base binary bytestring containers dependent-map dependent-sum dependent-sum-template directory edit-distance filepath haskeline @@ -128708,8 +130285,8 @@ self: { }: mkDerivation { pname = "lambdabot-haskell-plugins"; - version = "5.1.0.3"; - sha256 = "1hka7kb2j5nqzv9jljjyylfyrf5z3hsfp2sfgv95y5qsr2b6g96a"; + version = "5.1.0.4"; + sha256 = "19fl14c1j7p9qaf26g1qkmxvmw9r7hvxqmp9jxmmwbp7xlc3664v"; libraryHaskellDepends = [ array arrows base bytestring containers data-memocombinators directory filepath haskell-src-exts-simple hoogle HTTP IOSpec @@ -128729,8 +130306,8 @@ self: { }: mkDerivation { pname = "lambdabot-irc-plugins"; - version = "5.1.0.1"; - sha256 = "1axixb6q5j7vs93q9d3n5v7l57nvnbjpry1ww8vaqlm71m1z4l2f"; + version = "5.1.0.4"; + sha256 = "0kscksdqjysk9amxwb1xjh475pbwq22mf9as5kqwn72c8s75ngaf"; libraryHaskellDepends = [ base bytestring containers directory filepath lambdabot-core lifted-base mtl network SafeSemaphore split time @@ -128749,8 +130326,8 @@ self: { }: mkDerivation { pname = "lambdabot-misc-plugins"; - version = "5.1.0.1"; - sha256 = "1bg15z7k21l0dwnkvprxvx5jcvs5igl8fqffg11y7h0r74f4yhks"; + version = "5.1.0.4"; + sha256 = "169grwgg5x63qhls16c7xd0p78da38r275mar27il78az7qfgn8d"; libraryHaskellDepends = [ base bytestring containers filepath hstatsd lambdabot-core lifted-base mtl network network-uri parsec process random random-fu @@ -128769,8 +130346,8 @@ self: { }: mkDerivation { pname = "lambdabot-novelty-plugins"; - version = "5.1.0.1"; - sha256 = "1ispnp12i2f8fcs11nay3mww8sa6dwx7lkl6d6gc9cfhzgwih6gi"; + version = "5.1.0.4"; + sha256 = "1m6n0asp8pn12wif5jv0nvjipzgh7mzzxa17j4mzd7mdqi4dma7z"; libraryHaskellDepends = [ base binary brainfuck bytestring containers dice directory lambdabot-core misfortune process random-fu regex-tdfa unlambda @@ -128786,8 +130363,8 @@ self: { }: mkDerivation { pname = "lambdabot-reference-plugins"; - version = "5.1.0.1"; - sha256 = "0s5923hsl1pzyayi4954livp4rsgx84slwpnr7mq8nhfsdxm84wp"; + version = "5.1.0.4"; + sha256 = "0qavp784p5qdb2plhhgk1idrjxcazzn4a94pg8syymb24fzjvm1w"; libraryHaskellDepends = [ base bytestring containers HTTP lambdabot-core mtl network network-uri oeis process regex-tdfa split tagsoup utf8-string @@ -128802,8 +130379,8 @@ self: { }: mkDerivation { pname = "lambdabot-social-plugins"; - version = "5.1.0.1"; - sha256 = "1p46qyb2x7h37xs9y69k1mc5v84rwvkrgkdwkl4cw6pmnkmjnl42"; + version = "5.1.0.4"; + sha256 = "0kjjsnrrsrcdvkn75dsbw7afx8y87i36i6lk54hs6cg88zndailz"; libraryHaskellDepends = [ base binary bytestring containers lambdabot-core mtl split time ]; @@ -128815,8 +130392,8 @@ self: { ({ mkDerivation, base, oeis, QuickCheck, QuickCheck-safe }: mkDerivation { pname = "lambdabot-trusted"; - version = "5.1.0.1"; - sha256 = "11qvpxgv4xbs8iw0lix8mdj174dzj0gwgny7vgvs4vd9pi37sb7r"; + version = "5.1.0.4"; + sha256 = "1mlyhxc93d3466xhxqlyzg1c8988spzbyk4d5l0c05l1m0xlq77j"; libraryHaskellDepends = [ base oeis QuickCheck QuickCheck-safe ]; description = "Lambdabot trusted code"; license = "GPL"; @@ -129355,6 +130932,8 @@ self: { pname = "language-c-quote"; version = "0.12.2"; sha256 = "15c6rdj91768jf8lqzf4fkbi8k6kz9gch5w81x6qzy2l256rncgb"; + revision = "1"; + editedCabalFile = "099w1lln1vm000sf06wrmq6gya5sx2w4flrlwqz2c8wwvv8c9j9h"; libraryHaskellDepends = [ array base bytestring containers exception-mtl exception-transformers filepath haskell-src-meta mainland-pretty @@ -129453,15 +131032,15 @@ self: { license = stdenv.lib.licenses.gpl3; }) {}; - "language-docker_7_0_0" = callPackage + "language-docker_8_0_0" = callPackage ({ mkDerivation, base, bytestring, containers, directory, filepath , free, Glob, hspec, HUnit, megaparsec, mtl, prettyprinter, process , QuickCheck, split, template-haskell, text, th-lift, time }: mkDerivation { pname = "language-docker"; - version = "7.0.0"; - sha256 = "0c63la3739fbcf50vy1cp245fk7x723gviyykd3dmggm1jwgm515"; + version = "8.0.0"; + sha256 = "00zryknsc0717ysq8g1ip5dm70v8b33lfrscbzpdcw5dd2j32k7n"; libraryHaskellDepends = [ base bytestring containers free megaparsec mtl prettyprinter split template-haskell text th-lift time @@ -129583,13 +131162,18 @@ self: { }) {}; "language-elm" = callPackage - ({ mkDerivation, base, hspec, MissingH, mtl, pretty, protolude }: + ({ mkDerivation, base, doctest, hspec, MissingH, mtl, pretty + , protolude + }: mkDerivation { pname = "language-elm"; - version = "0.1.0.3"; - sha256 = "07pyj3ibrpa3mrqn6skjpk0w44hi32mm0c08yqpnql3qv2xy4wcz"; + version = "0.1.1.3"; + sha256 = "11g8jf7pbkb6gjwxjrwnk6hx38hjfymm421qnqd41cm0w2xmxbhh"; + enableSeparateDataOutput = true; libraryHaskellDepends = [ base MissingH mtl pretty protolude ]; - testHaskellDepends = [ base hspec mtl pretty protolude ]; + libraryToolDepends = [ doctest ]; + testHaskellDepends = [ base doctest hspec mtl pretty protolude ]; + testToolDepends = [ doctest ]; description = "Generate elm code"; license = stdenv.lib.licenses.bsd3; hydraPlatforms = stdenv.lib.platforms.none; @@ -130091,45 +131675,44 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; - "language-puppet_1_4_0" = callPackage - ({ mkDerivation, aeson, ansi-wl-pprint, attoparsec, base + "language-puppet_1_4_1" = callPackage + ({ mkDerivation, aeson, ansi-wl-pprint, async, attoparsec, base , base16-bytestring, bytestring, case-insensitive, containers - , cryptonite, directory, exceptions, filecache, filepath - , formatting, Glob, hashable, hruby, hslogger, hspec - , hspec-megaparsec, http-api-data, http-client, lens, lens-aeson - , megaparsec, memory, mtl, operational, optparse-applicative - , parallel-io, parsec, parser-combinators, pcre-utils, process - , protolude, random, regex-pcre-builtin, scientific, servant - , servant-client, split, stm, strict-base-types, temporary, text - , time, transformers, unix, unordered-containers, vector, yaml + , cryptonite, directory, filecache, filepath, formatting, Glob + , hashable, hruby, hslogger, hspec, hspec-megaparsec, http-api-data + , http-client, lens, lens-aeson, megaparsec, memory, mtl + , operational, optparse-applicative, parsec, parser-combinators + , pcre-utils, protolude, random, regex-pcre-builtin, scientific + , servant, servant-client, split, stm, strict-base-types, temporary + , text, time, transformers, unix, unordered-containers, vector + , yaml }: mkDerivation { pname = "language-puppet"; - version = "1.4.0"; - sha256 = "169kzd6csar170j0zqzisa82jxs5xfang17ys6aa4m1jx0nbh4mz"; + version = "1.4.1"; + sha256 = "1az4lalx2qb9wf0n99zjd9agy20x8369f80411mhj11rcnnl1a66"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; libraryHaskellDepends = [ aeson ansi-wl-pprint attoparsec base base16-bytestring bytestring - case-insensitive containers cryptonite directory exceptions - filecache filepath formatting hashable hruby hslogger hspec - http-api-data http-client lens lens-aeson megaparsec memory mtl - operational parsec parser-combinators pcre-utils process protolude - random regex-pcre-builtin scientific servant servant-client split - stm strict-base-types text time transformers unix - unordered-containers vector yaml + case-insensitive containers cryptonite directory filecache filepath + formatting hashable hruby hslogger http-api-data http-client lens + lens-aeson megaparsec memory mtl operational parsec + parser-combinators pcre-utils protolude random regex-pcre-builtin + scientific servant servant-client split stm strict-base-types text + time transformers unix unordered-containers vector yaml ]; executableHaskellDepends = [ - aeson ansi-wl-pprint base bytestring containers Glob hslogger - http-client lens megaparsec mtl optparse-applicative parallel-io - regex-pcre-builtin strict-base-types text transformers - unordered-containers vector yaml + aeson ansi-wl-pprint async base bytestring containers Glob hslogger + http-client lens mtl optparse-applicative regex-pcre-builtin + strict-base-types text transformers unordered-containers vector + yaml ]; testHaskellDepends = [ base Glob hslogger hspec hspec-megaparsec lens megaparsec mtl - pcre-utils protolude scientific strict-base-types temporary text - transformers unordered-containers vector + pcre-utils scientific strict-base-types temporary text transformers + unordered-containers vector ]; description = "Tools to parse and evaluate the Puppet DSL"; license = stdenv.lib.licenses.bsd3; @@ -130868,6 +132451,8 @@ self: { pname = "lazy-hash"; version = "0.1.0.0"; sha256 = "1xa2c8gxk5l4njbs58zpq2ybdvjd4y214p71nfmfrzw0arwz49pa"; + revision = "1"; + editedCabalFile = "07sn3q7q29zkxpillprx2d05pybjpvpglz8s7jq07akdhwmwx9mk"; libraryHaskellDepends = [ base constrained-categories hashable haskell-src-meta tagged template-haskell vector-space @@ -131171,6 +132756,17 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "leancheck-enum-instances" = callPackage + ({ mkDerivation, base, enum-types, leancheck }: + mkDerivation { + pname = "leancheck-enum-instances"; + version = "0.1.0.0"; + sha256 = "0l14npnkwdr3vcdjv2b20a0g3cka0nd93cm6hrq16dcphm1ckaj1"; + libraryHaskellDepends = [ base enum-types leancheck ]; + description = "listable instances for small enum types"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "leankit-api" = callPackage ({ mkDerivation, aeson, base, bytestring, colour, curl, split }: mkDerivation { @@ -131801,6 +133397,8 @@ self: { pname = "lens-sop"; version = "0.2.0.2"; sha256 = "16bd95cwqiprz55s5272mv6wiw5pmv6mvihviiwbdbilhq400s3z"; + revision = "1"; + editedCabalFile = "0k7xdwj64kd56kjh7ghjwm79rjwjqxlw5nwzwj0cq5q56vb340jm"; libraryHaskellDepends = [ base fclabels generics-sop transformers ]; @@ -131862,6 +133460,18 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "lens-typelevel" = callPackage + ({ mkDerivation, base, singletons }: + mkDerivation { + pname = "lens-typelevel"; + version = "0.1.1.0"; + sha256 = "0lsdp6rgacsa13fppa2dfn2nz8cdrvj5clmlshzrv1h0423hfgbp"; + libraryHaskellDepends = [ base singletons ]; + description = "Type-level lenses using singletons"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "lens-utils" = callPackage ({ mkDerivation, aeson, base, containers, data-default, lens , monoid, split, template-haskell @@ -131924,8 +133534,8 @@ self: { }: mkDerivation { pname = "lentil"; - version = "1.0.11.3"; - sha256 = "0kb9fydcv0skp94bhvhbqggam8vrq2wv5iradxmggaf41h0ly123"; + version = "1.1.0.1"; + sha256 = "1psb3ywbzg6k0cir5bxphjqmbzd0n1l2w3skkr31px79haa4wbm7"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ @@ -132573,8 +134183,8 @@ self: { }: mkDerivation { pname = "libmpd"; - version = "0.9.0.8"; - sha256 = "0kpdj4ciwrfd6vmr60y7c276h5z2r40avs26a0x8s51rbr00lasq"; + version = "0.9.0.9"; + sha256 = "1931m23iqb4wddpdidm4ph746zpaw41kkjzmb074j7yyfpk7x1jv"; libraryHaskellDepends = [ attoparsec base bytestring containers data-default-class filepath mtl network old-locale text time utf8-string @@ -133182,6 +134792,7 @@ self: { ]; description = "STM operations lifted through monad transformer stacks"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "lifted-threads" = callPackage @@ -133334,8 +134945,8 @@ self: { }: mkDerivation { pname = "limp"; - version = "0.3.2.2"; - sha256 = "0dx2xgkrqda8qwfiwm3pd5lfnfw5sxf1qdz5sbp54jf6516m2c4w"; + version = "0.3.2.3"; + sha256 = "1jshdnvrgjpgcqzl7c3q019k6iipk3v19waqxl43va60wfkj4iw8"; libraryHaskellDepends = [ base containers ]; testHaskellDepends = [ base containers QuickCheck tasty tasty-quickcheck tasty-th @@ -133351,8 +134962,8 @@ self: { }: mkDerivation { pname = "limp-cbc"; - version = "0.3.2.2"; - sha256 = "0v637hrm980iqj3bh9p0ixirkhg3dwq7i36pff3n1fiav516qbww"; + version = "0.3.2.3"; + sha256 = "1fdjhifnx2yhfbzjs5lsaa8vn5ps4li5j3id8sjj7fwj4yn4m453"; libraryHaskellDepends = [ base containers limp vector ]; libraryToolDepends = [ c2hs ]; testHaskellDepends = [ @@ -135055,6 +136666,8 @@ self: { pname = "llvm-hs"; version = "7.0.1"; sha256 = "1ghgmmks22ra6ivhwhy65yj9ihr51lbhwdghm52pna5f14brhlyy"; + revision = "1"; + editedCabalFile = "0nxyjcnsph4mlyxqy47m67ayd4mnpxx3agy5vx7f4v74bg4xx44a"; setupHaskellDepends = [ base Cabal containers ]; libraryHaskellDepends = [ array attoparsec base bytestring containers exceptions llvm-hs-pure @@ -135092,6 +136705,27 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "llvm-hs-pretty_0_6_0_0" = callPackage + ({ mkDerivation, array, base, bytestring, directory, filepath + , llvm-hs, llvm-hs-pure, mtl, prettyprinter, tasty, tasty-golden + , tasty-hspec, tasty-hunit, text, transformers + }: + mkDerivation { + pname = "llvm-hs-pretty"; + version = "0.6.0.0"; + sha256 = "19p6k3gri7zhxhhr6rip177zh08fcw8ld7cwqv83ynvr4s9campz"; + libraryHaskellDepends = [ + array base bytestring llvm-hs-pure prettyprinter text + ]; + testHaskellDepends = [ + base directory filepath llvm-hs llvm-hs-pure mtl tasty tasty-golden + tasty-hspec tasty-hunit text transformers + ]; + description = "A pretty printer for LLVM IR"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "llvm-hs-pure" = callPackage ({ mkDerivation, attoparsec, base, bytestring, containers, fail , mtl, tasty, tasty-hunit, tasty-quickcheck, template-haskell @@ -136448,6 +138082,8 @@ self: { pname = "long-double"; version = "0.1"; sha256 = "072yfv1kv83k8qc9apks2czr9p6znk46bbbjmsdbcpzyb8byh64j"; + revision = "1"; + editedCabalFile = "12vmzzrxgb4yqf9axf1fildl4m0dfm3zqxk4vg6k6m5qi6haz1yn"; libraryHaskellDepends = [ base integer-gmp ]; description = "FFI bindings for C long double"; license = stdenv.lib.licenses.bsd3; @@ -136754,8 +138390,8 @@ self: { pname = "lrucaching"; version = "0.3.3"; sha256 = "192a2zap1bmxa2y48n48rmngf18fr8k0az4a230hziv3g795yzma"; - revision = "4"; - editedCabalFile = "11zfnngp3blx8c3sgy5cva1g9bp69wqz7ys23gdm905i7sjjs6a9"; + revision = "5"; + editedCabalFile = "0dfrgg60nd7l7pfjar1s1g380r4591y6ccv9fyh0n34ymhizk84y"; libraryHaskellDepends = [ base base-compat deepseq hashable psqueues vector ]; @@ -136812,8 +138448,8 @@ self: { }: mkDerivation { pname = "lsp-test"; - version = "0.4.0.0"; - sha256 = "0kiddzb7lwwdf96jz4ghvjnwr2hf9jiv8vjjlxwm76k3ab4wx09c"; + version = "0.5.0.0"; + sha256 = "054hs4wpnvwa8ikp8faa4xnx5fszywsxw4m3ci6kmvrk3i8frh2z"; libraryHaskellDepends = [ aeson aeson-pretty ansi-terminal base bytestring conduit conduit-parse containers data-default Diff directory filepath @@ -136875,8 +138511,8 @@ self: { }: mkDerivation { pname = "ltext"; - version = "0.1.2.2"; - sha256 = "12ql2p9zkib4m7hbfxzn8pxg0n9rgf35bhf1csrf48b6kzl9z28f"; + version = "0.1.3"; + sha256 = "1sd8iqcfm7qsp8rq1ckixi8lss8mwi4siqqgsybbxjg6ajs9m2x6"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -136890,8 +138526,9 @@ self: { transformers unordered-containers ]; testHaskellDepends = [ - base QuickCheck quickcheck-combinators quickcheck-instances tasty - tasty-quickcheck text + attoparsec base directory exceptions extra mtl pretty QuickCheck + quickcheck-combinators quickcheck-instances tasty tasty-quickcheck + text transformers unordered-containers ]; description = "Parameterized file evaluator"; license = stdenv.lib.licenses.bsd3; @@ -137910,8 +139547,8 @@ self: { }: mkDerivation { pname = "magic-wormhole"; - version = "0.1.0"; - sha256 = "0lkwnbr76chiakc7j51pm23q15q26l3xqglg1rj5blwybkymg29x"; + version = "0.2.1"; + sha256 = "1wdn5nykn4wqb65xdhkpy8gpz216a5wi3nngadf58c7acym60gyx"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; @@ -138204,6 +139841,8 @@ self: { pname = "mainland-pretty"; version = "0.7"; sha256 = "1xzavchbp345a63i24hs8632l3xk0c1pxqd32b2i6615cp9pnxqi"; + revision = "1"; + editedCabalFile = "1apyqnbcsbjfkqc1d6mk74pxl12130r6ijwhj555gddls9g0qdf3"; libraryHaskellDepends = [ base containers srcloc text transformers ]; @@ -139432,6 +141071,28 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "massiv_0_2_3_0" = callPackage + ({ mkDerivation, base, bytestring, data-default, data-default-class + , deepseq, ghc-prim, hspec, primitive, QuickCheck, safe-exceptions + , vector + }: + mkDerivation { + pname = "massiv"; + version = "0.2.3.0"; + sha256 = "1wrfzlika7w82nxmmj192cbrhm769yhmichk1lpylldzvv9j0wl5"; + libraryHaskellDepends = [ + base bytestring data-default-class deepseq ghc-prim primitive + vector + ]; + testHaskellDepends = [ + base bytestring data-default deepseq hspec QuickCheck + safe-exceptions vector + ]; + description = "Massiv (Массив) is an Array Library"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "massiv-io" = callPackage ({ mkDerivation, base, bytestring, data-default, deepseq, directory , filepath, JuicyPixels, massiv, netpbm, process, vector @@ -139856,8 +141517,8 @@ self: { }: mkDerivation { pname = "matterhorn"; - version = "40901.0.0"; - sha256 = "1ra1ikivf5y17mzwjvfsvg1kz4438wllv2qwxzaigb9cirrz0n4r"; + version = "50200.0.0"; + sha256 = "07zbkkbn5cn8rcbc0xznlldcflhfp4szx6phlh7xpgf2hrcyc3g6"; isLibrary = false; isExecutable = true; enableSeparateDataOutput = true; @@ -139893,8 +141554,8 @@ self: { }: mkDerivation { pname = "mattermost-api"; - version = "40900.1.0"; - sha256 = "1ngpinpal50s8bizwvnpafx6zh8zqb7m0yc21lcp7ybh4yhwikad"; + version = "50200.0.0"; + sha256 = "09jpgkz2hcybrrpkdn2x5lf2wnjzlinzxxsfrqvh7hgkga4gb7q8"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -139918,8 +141579,8 @@ self: { }: mkDerivation { pname = "mattermost-api-qc"; - version = "40900.1.0"; - sha256 = "0mdwi6130hz508bxbhriyg7fr6rqpbalmjwwizvj9nb7cz1dmrsl"; + version = "50200.0.0"; + sha256 = "12m7r98qpd2i5d5dv60ibd0v1pxwfnx58v77k8y55dyd1d0m96v0"; libraryHaskellDepends = [ base containers mattermost-api QuickCheck text time ]; @@ -140203,17 +141864,15 @@ self: { }: mkDerivation { pname = "mcm"; - version = "0.6.5.0"; - sha256 = "1vf54aziyybxyc9bwnn57pfcjmgli2hjjd2kzij8vy2g64ipip9m"; - revision = "1"; - editedCabalFile = "1anhhrl8a627y7vfvcmiwbfjiyvglwrqcim1gc6zycqidyqq22pq"; + version = "0.6.8.1"; + sha256 = "1nn6s15c6wwi7b0afzqfczdmc0ivrc8ncychmjym93lw967vjm67"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ base blaze-html bytestring containers directory filepath hostname MissingH polyparse process text unix ]; - description = "Manages the contents of files and directories"; + description = "Machine Configuration Manager"; license = stdenv.lib.licenses.gpl3; hydraPlatforms = stdenv.lib.platforms.none; }) {}; @@ -140691,7 +142350,7 @@ self: { license = stdenv.lib.licenses.bsd2; }) {}; - "megaparsec_7_0_2" = callPackage + "megaparsec_7_0_4" = callPackage ({ mkDerivation, base, bytestring, case-insensitive, containers , criterion, deepseq, hspec, hspec-expectations, mtl , parser-combinators, QuickCheck, scientific, text, transformers @@ -140699,8 +142358,8 @@ self: { }: mkDerivation { pname = "megaparsec"; - version = "7.0.2"; - sha256 = "1ny54saxiz0md50mp24gz267gmqjbl8d8b1zi74hi6bcxyhzd278"; + version = "7.0.4"; + sha256 = "1hg83m85f4v78mqdkznd1ddk9y32hnrv0bgva7ir3vydx37aanrj"; libraryHaskellDepends = [ base bytestring case-insensitive containers deepseq mtl parser-combinators scientific text transformers @@ -141111,8 +142770,8 @@ self: { }: mkDerivation { pname = "menoh"; - version = "0.2.0"; - sha256 = "0n6wl03d8gyvmdjmxz0hrbvwvbyzc4qyz7qr5ydgxyxj56pg2cb4"; + version = "0.3.0"; + sha256 = "0w2p2g5zk4n3k84yrk7hs7kgk82w6avd2i0zk6iczjhhkihh1c6m"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; @@ -141124,7 +142783,8 @@ self: { base filepath JuicyPixels optparse-applicative vector ]; testHaskellDepends = [ - async base filepath JuicyPixels tasty tasty-hunit tasty-th vector + async base bytestring filepath JuicyPixels tasty tasty-hunit + tasty-th vector ]; description = "Haskell binding for Menoh DNN inference library"; license = stdenv.lib.licenses.mit; @@ -141399,6 +143059,56 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "metar" = callPackage + ({ mkDerivation, base, checkers, deriving-compat, HTTP, lens + , network-uri, QuickCheck, semigroupoids, semigroups, tagsoup + , tagsoup-selection, tasty, tasty-hunit, tasty-quickcheck + , transformers + }: + mkDerivation { + pname = "metar"; + version = "0.0.2"; + sha256 = "1iaqjzy1a7hkvcni6ijkwwcsb433j3gkx9f7z8ng1yhlbcr9a556"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + base deriving-compat HTTP lens network-uri semigroupoids semigroups + tagsoup tagsoup-selection transformers + ]; + executableHaskellDepends = [ base ]; + testHaskellDepends = [ + base checkers lens QuickCheck tasty tasty-hunit tasty-quickcheck + ]; + description = "Australian METAR"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + + "metar-http" = callPackage + ({ mkDerivation, base, checkers, http-types, lens, metar + , network-uri, QuickCheck, semigroupoids, semigroups, tasty + , tasty-hunit, tasty-quickcheck, text, transformers, utf8-string + , wai, warp + }: + mkDerivation { + pname = "metar-http"; + version = "0.0.1"; + sha256 = "0xpi9x1c05py659a94ldksn3z5xz9ws069gp1swam1fllg8xbxj6"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + base http-types lens metar network-uri semigroupoids semigroups + text transformers utf8-string wai warp + ]; + executableHaskellDepends = [ base ]; + testHaskellDepends = [ + base checkers lens QuickCheck tasty tasty-hunit tasty-quickcheck + ]; + description = "HTTP for METAR"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "metric" = callPackage ({ mkDerivation, base, data-default, edit-distance, hmatrix , QuickCheck, test-framework, test-framework-quickcheck2, vector @@ -141701,6 +143411,18 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "microlens_0_4_10" = callPackage + ({ mkDerivation, base }: + mkDerivation { + pname = "microlens"; + version = "0.4.10"; + sha256 = "1v277yyy4p9q57xr2lfp6qs24agglfczmcabrapxrzci3jfshmcw"; + libraryHaskellDepends = [ base ]; + description = "A tiny lens library with no dependencies. If you're writing an app, you probably want microlens-platform, not this."; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "microlens-aeson" = callPackage ({ mkDerivation, aeson, attoparsec, base, bytestring, criterion , deepseq, hashable, lens, lens-aeson, microlens, scientific, tasty @@ -141766,6 +143488,22 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "microlens-ghc_0_4_10" = callPackage + ({ mkDerivation, array, base, bytestring, containers, microlens + , transformers + }: + mkDerivation { + pname = "microlens-ghc"; + version = "0.4.10"; + sha256 = "102dbrdsdadxbbhvx8avv1wbk84767a7lkb8ckp3zxk9g7qlly33"; + libraryHaskellDepends = [ + array base bytestring containers microlens transformers + ]; + description = "microlens + array, bytestring, containers, transformers"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "microlens-mtl" = callPackage ({ mkDerivation, base, microlens, mtl, transformers , transformers-compat @@ -141797,6 +143535,23 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "microlens-platform_0_3_11" = callPackage + ({ mkDerivation, base, hashable, microlens, microlens-ghc + , microlens-mtl, microlens-th, text, unordered-containers, vector + }: + mkDerivation { + pname = "microlens-platform"; + version = "0.3.11"; + sha256 = "18950lxgmsg5ksvyyi3zs1smjmb1qf1q73a3p3g44bh21miz0xwb"; + libraryHaskellDepends = [ + base hashable microlens microlens-ghc microlens-mtl microlens-th + text unordered-containers vector + ]; + description = "Feature-complete microlens"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "microlens-th" = callPackage ({ mkDerivation, base, containers, microlens, template-haskell , th-abstraction, transformers @@ -141863,12 +143618,12 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; - "microspec_0_2_0_1" = callPackage + "microspec_0_2_1_3" = callPackage ({ mkDerivation, base, QuickCheck, time }: mkDerivation { pname = "microspec"; - version = "0.2.0.1"; - sha256 = "1ygkxsj7rm42f245qip8893lm189immmd5ajimp5d1pkzfkw4dnp"; + version = "0.2.1.3"; + sha256 = "0615gdbsk7i3w71adjp69zabw4mli965wffm2h846hp6pjj31xcb"; libraryHaskellDepends = [ base QuickCheck time ]; description = "Tiny QuickCheck test library with minimal dependencies"; license = stdenv.lib.licenses.bsd3; @@ -141944,8 +143699,8 @@ self: { ({ mkDerivation, base, containers, safe, stm }: mkDerivation { pname = "midair"; - version = "0.2.0.0"; - sha256 = "1fdii0pj3f1bskj9bnphhy9gbp58cqjk0q3cmfj3ynkqz20j49ij"; + version = "0.2.0.1"; + sha256 = "1dkja5arps41wanhv1jnkf99xrc8f5aiimp27myd595lqqdr87s2"; libraryHaskellDepends = [ base containers safe stm ]; description = "Hot-swappable FRP"; license = stdenv.lib.licenses.gpl3; @@ -143043,20 +144798,22 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; - "mmark-cli_0_0_4_0" = callPackage - ({ mkDerivation, aeson, base, bytestring, directory, gitrev, lucid - , megaparsec, mmark, mmark-ext, optparse-applicative, stache, text + "mmark-cli_0_0_5_0" = callPackage + ({ mkDerivation, aeson, base, bytestring, directory + , ghc-syntax-highlighter, gitrev, lucid, megaparsec, mmark + , mmark-ext, optparse-applicative, stache, text , unordered-containers }: mkDerivation { pname = "mmark-cli"; - version = "0.0.4.0"; - sha256 = "0vw1pq3iz4bbz5fgbzi8lvpscc58izh6y210jfi12h2jyzajyf5k"; + version = "0.0.5.0"; + sha256 = "15qrp2q1flx9csqvj8zx9w1jqg8pwfi0v7wpia7n7vg09jgydhby"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ - aeson base bytestring directory gitrev lucid megaparsec mmark - mmark-ext optparse-applicative stache text unordered-containers + aeson base bytestring directory ghc-syntax-highlighter gitrev lucid + megaparsec mmark mmark-ext optparse-applicative stache text + unordered-containers ]; description = "Command line interface to the MMark markdown processor"; license = stdenv.lib.licenses.bsd3; @@ -143086,6 +144843,27 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "mmark-ext_0_2_1_1" = callPackage + ({ mkDerivation, base, foldl, ghc-syntax-highlighter, hspec + , hspec-discover, lucid, microlens, mmark, modern-uri, skylighting + , text + }: + mkDerivation { + pname = "mmark-ext"; + version = "0.2.1.1"; + sha256 = "01av7d9n75mg9yzkxszrvbxjbsv4n0gsdmg3n2620zn40j5lwmcq"; + enableSeparateDataOutput = true; + libraryHaskellDepends = [ + base foldl ghc-syntax-highlighter lucid microlens mmark modern-uri + skylighting text + ]; + testHaskellDepends = [ base hspec lucid mmark skylighting text ]; + testToolDepends = [ hspec-discover ]; + description = "Commonly useful extensions for the MMark markdown processor"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "mmorph" = callPackage ({ mkDerivation, base, mtl, transformers, transformers-compat }: mkDerivation { @@ -143277,6 +145055,8 @@ self: { pname = "modern-uri"; version = "0.3.0.1"; sha256 = "01a5jnv8kbl2c9ka9dgqm4a8b7n6frmg7yi8f417qcnwgn1lbs78"; + revision = "1"; + editedCabalFile = "13q0lapxk1v3ci3bqv21942jf2fw87frbbam53apd3i2iv69bqyr"; libraryHaskellDepends = [ base bytestring containers contravariant deepseq exceptions megaparsec mtl profunctors QuickCheck reflection tagged @@ -143339,6 +145119,17 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "modular" = callPackage + ({ mkDerivation, base, ghc-typelits-knownnat }: + mkDerivation { + pname = "modular"; + version = "0.1.0.8"; + sha256 = "1igg7am4z1kfvpyp5a53rsqan5i209rp1s0z9xamqydx60ilc2s3"; + libraryHaskellDepends = [ base ghc-typelits-knownnat ]; + description = "Type-safe modular arithmetic"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "modular-arithmetic" = callPackage ({ mkDerivation, base, doctest, Glob }: mkDerivation { @@ -145329,14 +147120,20 @@ self: { }) {}; "monopati" = callPackage - ({ mkDerivation, base, directory, free, split }: + ({ mkDerivation, base, directory, free, hedgehog, split + , transformers + }: mkDerivation { pname = "monopati"; - version = "0.1.2"; - sha256 = "1bimppfh14754a8dra6cjd2ricdyry5fmm0shryf974h9l6wbrp8"; + version = "0.1.3"; + sha256 = "1g7n1m6df2c9rl99fii7x4a7z3xwv2mcvxd96gg1maji9709chqb"; libraryHaskellDepends = [ base directory free split ]; + testHaskellDepends = [ + base directory free hedgehog split transformers + ]; description = "Well-typed paths"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "montage" = callPackage @@ -145895,16 +147692,18 @@ self: { }) {inherit (pkgs) mpg123;}; "mpi-hs" = callPackage - ({ mkDerivation, base, bytestring, c2hs, criterion, monad-loops - , openmpi, store + ({ mkDerivation, base, binary, bytestring, c2hs, criterion + , monad-loops, openmpi, packman, store }: mkDerivation { pname = "mpi-hs"; - version = "0.3.0.0"; - sha256 = "1a8vlsrpvgyzq4p0qa90l4ck3v9a0pncy9bmmn6kjf6j2wa5j9qx"; + version = "0.4.1.0"; + sha256 = "0bf0ghzvakww5slvfd3fq0sa0972i6y60lg6ibby49nslfkl52wd"; isLibrary = true; isExecutable = true; - libraryHaskellDepends = [ base bytestring monad-loops store ]; + libraryHaskellDepends = [ + base binary bytestring monad-loops packman store + ]; librarySystemDepends = [ openmpi ]; libraryToolDepends = [ c2hs ]; executableHaskellDepends = [ base ]; @@ -145912,6 +147711,7 @@ self: { benchmarkHaskellDepends = [ base criterion ]; description = "MPI bindings for Haskell"; license = stdenv.lib.licenses.asl20; + hydraPlatforms = stdenv.lib.platforms.none; }) {inherit (pkgs) openmpi;}; "mpppc" = callPackage @@ -146756,6 +148556,48 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "multilinear" = callPackage + ({ mkDerivation, base, containers, criterion, deepseq, mwc-random + , primitive, statistics, vector + }: + mkDerivation { + pname = "multilinear"; + version = "0.2.3.0"; + sha256 = "0kx9a7iysihkaapgz8hwa5sn0c1z69yiagxmw0n5i1bjmslzssvb"; + libraryHaskellDepends = [ + base containers deepseq mwc-random primitive statistics vector + ]; + testHaskellDepends = [ base criterion ]; + benchmarkHaskellDepends = [ base criterion ]; + description = "Comprehensive and efficient (multi)linear algebra implementation"; + license = stdenv.lib.licenses.bsd3; + }) {}; + + "multilinear-io" = callPackage + ({ mkDerivation, aeson, base, bytestring, cassava, cereal + , cereal-vector, conduit, criterion, deepseq, directory, either + , multilinear, transformers, vector, zlib + }: + mkDerivation { + pname = "multilinear-io"; + version = "0.2.3"; + sha256 = "1ymlx7pg0w33a703mqdr4rd93f828xp6ygs4az1y9j0miwax9y97"; + revision = "1"; + editedCabalFile = "0xpf219r7n7hqh7b37mr9scy965mxfh9j871ayaab1mb0s7rglw9"; + libraryHaskellDepends = [ + aeson base bytestring cassava cereal cereal-vector conduit either + multilinear transformers vector zlib + ]; + testHaskellDepends = [ + base directory either multilinear transformers + ]; + benchmarkHaskellDepends = [ + base criterion deepseq directory either multilinear transformers + ]; + description = "Input/output capability for multilinear package"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "multimap" = callPackage ({ mkDerivation, base, containers }: mkDerivation { @@ -146931,8 +148773,8 @@ self: { ({ mkDerivation, base, template-haskell }: mkDerivation { pname = "multirec"; - version = "0.7.8"; - sha256 = "0n5rsjrg8b98aim1wsv1s2i17299h8g4k2gb7mgn1swzldrigjhz"; + version = "0.7.9"; + sha256 = "0a6kc3kkg7hz5wigp28fhp01pryb8gaw03fjc35mm4i2jfcjrplz"; libraryHaskellDepends = [ base template-haskell ]; testHaskellDepends = [ base ]; description = "Generic programming for families of recursive datatypes"; @@ -146972,10 +148814,8 @@ self: { ({ mkDerivation, base, containers, deepseq, doctest, Glob }: mkDerivation { pname = "multiset"; - version = "0.3.4"; - sha256 = "0kdmf0ba946pxq1m8q0x5bk2my2fd5frhaw3cj2i3x88nc9f0ycp"; - revision = "1"; - editedCabalFile = "0m7xk2217a5zpwb1hwp5j5r6yzlf0f4lmlnln2lb9bqihjl3j9x8"; + version = "0.3.4.1"; + sha256 = "05iynv54mgfwil7l81ni8mrhhb5vz3fdls13vm2m3dnwqgp7vzxh"; libraryHaskellDepends = [ base containers deepseq ]; testHaskellDepends = [ base doctest Glob ]; description = "The Data.MultiSet container type"; @@ -148100,6 +149940,30 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "mysql-haskell_0_8_4_1" = callPackage + ({ mkDerivation, base, binary, binary-ieee754, binary-parsers + , blaze-textual, bytestring, bytestring-lexing, cryptonite + , io-streams, memory, monad-loops, network, scientific, tasty + , tasty-hunit, tcp-streams, text, time, tls, vector, wire-streams + , word24 + }: + mkDerivation { + pname = "mysql-haskell"; + version = "0.8.4.1"; + sha256 = "0m3kqm5ldy47gv0gbh3sxv2zm4kmszw96r5sar5bzb3v9jvmz94x"; + libraryHaskellDepends = [ + base binary binary-ieee754 binary-parsers blaze-textual bytestring + bytestring-lexing cryptonite io-streams memory monad-loops network + scientific tcp-streams text time tls vector wire-streams word24 + ]; + testHaskellDepends = [ + base bytestring io-streams tasty tasty-hunit text time vector + ]; + description = "pure haskell MySQL driver"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "mysql-haskell-nem" = callPackage ({ mkDerivation, base, bytestring, io-streams, mysql-haskell , scientific, text, time @@ -148277,6 +150141,68 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "n2o" = callPackage + ({ mkDerivation, base, binary, bytestring, containers, hspec, text + }: + mkDerivation { + pname = "n2o"; + version = "0.11.1"; + sha256 = "0yvgis2v2jgdny50py8xmc9b1p2zi5kjgf45xsgsyyhzjyr30kb7"; + libraryHaskellDepends = [ base binary bytestring containers text ]; + testHaskellDepends = [ base hspec ]; + description = "Abstract Protocol Loop"; + license = stdenv.lib.licenses.bsd3; + }) {}; + + "n2o-nitro" = callPackage + ({ mkDerivation, base, base64-bytestring, binary, bytestring + , containers, n2o, text + }: + mkDerivation { + pname = "n2o-nitro"; + version = "0.11.2"; + sha256 = "1vh0r03h0k60z4q722pw4h5q0l7l56fmyp57im0nankci8vj0s38"; + libraryHaskellDepends = [ + base base64-bytestring binary bytestring containers n2o text + ]; + description = "Nitro Elements, Events and Actions"; + license = stdenv.lib.licenses.bsd3; + }) {}; + + "n2o-protocols" = callPackage + ({ mkDerivation, base, base64-bytestring, binary, bytestring + , containers, n2o, n2o-nitro, time + }: + mkDerivation { + pname = "n2o-protocols"; + version = "0.11.2"; + sha256 = "1w5r99k9wvhbwvx0hzgpn1aahhnb84ib0n7xgq1ybpgy3s9cggzk"; + libraryHaskellDepends = [ + base base64-bytestring binary bytestring containers n2o n2o-nitro + time + ]; + description = "N2O Protocols Starter Pack"; + license = stdenv.lib.licenses.bsd3; + }) {}; + + "n2o-web" = callPackage + ({ mkDerivation, attoparsec, base, base64-bytestring, binary + , bytestring, case-insensitive, containers, n2o, n2o-protocols + , network, text, websockets + }: + mkDerivation { + pname = "n2o-web"; + version = "0.11.2"; + sha256 = "0d01lsfd2rwavzm01bkk3020r0wpfqyyqjbdf1pc8hw1im3843p6"; + libraryHaskellDepends = [ + attoparsec base base64-bytestring binary bytestring + case-insensitive containers n2o n2o-protocols network text + websockets + ]; + description = "N2O adapter for WebSockets"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "nagios-check" = callPackage ({ mkDerivation, base, bifunctors, exceptions, hspec, mtl , QuickCheck, text @@ -148404,6 +150330,8 @@ self: { pname = "named"; version = "0.2.0.0"; sha256 = "17ldvxypf099wj5phzh2aymzfwmyiyzhz24h1aj2s21nrys5n6n0"; + revision = "1"; + editedCabalFile = "0rnzxqlpxsfyvmc2i53iqspw03w2liflpy0zrc84pn6kw4v822j3"; libraryHaskellDepends = [ base ]; testHaskellDepends = [ base ]; description = "Named parameters (keyword arguments) for Haskell"; @@ -150082,6 +152010,18 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "network-byte-order" = callPackage + ({ mkDerivation, base, bytestring, doctest }: + mkDerivation { + pname = "network-byte-order"; + version = "0.0.0.0"; + sha256 = "0wfy57ip87ksppggpz26grk4w144yld95mf2y0c6mhcs1l8z3div"; + libraryHaskellDepends = [ base bytestring ]; + testHaskellDepends = [ base bytestring doctest ]; + description = "Network byte order utilities"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "network-bytestring" = callPackage ({ mkDerivation, base, bytestring, network, unix }: mkDerivation { @@ -150098,8 +152038,8 @@ self: { ({ mkDerivation, base, bytestring, network, text, time, vector }: mkDerivation { pname = "network-carbon"; - version = "1.0.13"; - sha256 = "06cc62fns07flmsl9gbdicmqqg5icmy3m4n0nvp2xqjk1ax8ws39"; + version = "1.0.14"; + sha256 = "1jrmda71gkcpppzv8s44kms4vz4zj7yb67wyr882s2b4hcf4il5b"; libraryHaskellDepends = [ base bytestring network text time vector ]; @@ -150804,8 +152744,8 @@ self: { ({ mkDerivation, base, doctest, network-uri, template-haskell }: mkDerivation { pname = "network-uri-static"; - version = "0.1.1.0"; - sha256 = "1fjw3a9ypmqf7kl8s9mgwa9jlswz98igp830f1hsyc1hdh9xlrqw"; + version = "0.1.2.0"; + sha256 = "1r1blpz313v6qacvbns53c2i1zgvadvl0ibmp2s3bv1ymm4caj74"; libraryHaskellDepends = [ base network-uri template-haskell ]; testHaskellDepends = [ base doctest ]; description = "A small utility to declare type-safe static URIs"; @@ -150976,14 +152916,13 @@ self: { }: mkDerivation { pname = "newsynth"; - version = "0.3.0.3"; - sha256 = "1vbh9d17mibzjkakqwda2dcmqkamaq48zv0dcd104xmgkgmqzvw2"; + version = "0.3.0.4"; + sha256 = "0w31h7xqv9sk0jb1mdviv107w8y7v018bzdvdw8gcrjyvp47307q"; isLibrary = true; isExecutable = true; - libraryHaskellDepends = [ - base containers fixedprec random superdoc - ]; - executableHaskellDepends = [ base random superdoc time ]; + setupHaskellDepends = [ base superdoc ]; + libraryHaskellDepends = [ base containers fixedprec random ]; + executableHaskellDepends = [ base random time ]; description = "Exact and approximate synthesis of quantum circuits"; license = stdenv.lib.licenses.gpl3; hydraPlatforms = stdenv.lib.platforms.none; @@ -151182,8 +153121,8 @@ self: { }: mkDerivation { pname = "ngx-export"; - version = "1.5.0"; - sha256 = "1lw1hf2xy86n6c8426zdvk1qbm43gsk5zxjrbfqcy28qlnvwcdpa"; + version = "1.6.0"; + sha256 = "0svl195w8prf45g0pda1j6hngxpb18vdpc15cybxrzp2x689dxll"; libraryHaskellDepends = [ async base binary bytestring deepseq monad-loops template-haskell unix @@ -151198,8 +153137,8 @@ self: { }: mkDerivation { pname = "ngx-export-tools"; - version = "0.1.2.0"; - sha256 = "0vkcgj8y4jh63nwh0djxfjvkbpa66zpf32y5912lwj7xf6rm769q"; + version = "0.3.0.0"; + sha256 = "0dnkw5vvvdkcqqga9i4pvclvr3bh6wywdg0r60l8vwdcpi820dkl"; libraryHaskellDepends = [ aeson base binary bytestring ngx-export safe template-haskell ]; @@ -151414,18 +153353,18 @@ self: { }) {}; "nix-delegate" = callPackage - ({ mkDerivation, base, foldl, managed, neat-interpolation - , optparse-applicative, text, turtle + ({ mkDerivation, base, bytestring, foldl, managed + , neat-interpolation, optparse-applicative, text, turtle }: mkDerivation { pname = "nix-delegate"; - version = "1.0.0"; - sha256 = "1fzk6a2izs8sf2gq93m91m6l7h8i3374as8979h106588ww2ghhb"; + version = "1.0.1"; + sha256 = "00wyzj4xck0kjn3151q9crsycgh26nvg56567c0ifdr0s5h5f00w"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ - base foldl managed neat-interpolation optparse-applicative text - turtle + base bytestring foldl managed neat-interpolation + optparse-applicative text turtle ]; executableHaskellDepends = [ base ]; description = "Convenient utility for distributed Nix builds"; @@ -151434,18 +153373,18 @@ self: { }) {}; "nix-deploy" = callPackage - ({ mkDerivation, base, neat-interpolation, optparse-applicative - , optparse-generic, text, turtle + ({ mkDerivation, base, bytestring, neat-interpolation + , optparse-applicative, optparse-generic, text, turtle }: mkDerivation { pname = "nix-deploy"; - version = "1.0.2"; - sha256 = "07cirn4gaaarw5va128f63jp2q7jlghmg4kclya4fvapx963qbya"; + version = "1.0.3"; + sha256 = "0anhmc9g9k40nwj87f24hq4wnj6mkli36dzhzdpa0p3cpg7sh2kh"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ - base neat-interpolation optparse-applicative optparse-generic text - turtle + base bytestring neat-interpolation optparse-applicative + optparse-generic text turtle ]; description = "Deploy Nix-built software to a NixOS machine"; license = stdenv.lib.licenses.asl20; @@ -151458,8 +153397,8 @@ self: { }: mkDerivation { pname = "nix-derivation"; - version = "1.0.1"; - sha256 = "1z36ihzcnll6vpvv8hr95j9vx0j69v7nir6bxgd6wmidpzigkdmc"; + version = "1.0.2"; + sha256 = "16xx4817ncgqvhmydbfr35lhgiw34js2n5liyfing3qvbfprmscw"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -151476,18 +153415,18 @@ self: { "nix-diff" = callPackage ({ mkDerivation, attoparsec, base, containers, Diff, mtl - , nix-derivation, optparse-generic, system-filepath, text, unix + , nix-derivation, optparse-applicative, system-filepath, text, unix , vector }: mkDerivation { pname = "nix-diff"; - version = "1.0.4"; - sha256 = "1ggsqm8bcfvx3l2nji90gwllkq2v832wihf8msfi9br4mqwx234j"; + version = "1.0.5"; + sha256 = "1gs19y4k4aykm3hzpkygdx5wqblcnqxbh3jq3hl18sm8h4cf9871"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ - attoparsec base containers Diff mtl nix-derivation optparse-generic - system-filepath text unix vector + attoparsec base containers Diff mtl nix-derivation + optparse-applicative system-filepath text unix vector ]; description = "Explain why two Nix derivations differ"; license = stdenv.lib.licenses.bsd3; @@ -151817,6 +153756,17 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "nominal" = callPackage + ({ mkDerivation, base, containers }: + mkDerivation { + pname = "nominal"; + version = "0.2.0.0"; + sha256 = "1wd2vd0qn8ln3a5r29gikdcr4c2c2rf43p6kq3wmqm8ww30djgca"; + libraryHaskellDepends = [ base containers ]; + description = "Binders and alpha-equivalence made easy"; + license = stdenv.lib.licenses.gpl3; + }) {}; + "nomyx-api" = callPackage ({ mkDerivation, aeson, base, bytestring, containers, either , hslogger, lens, mtl, network-uri, nomyx-core, nomyx-language @@ -152068,8 +154018,8 @@ self: { ({ mkDerivation, base, containers, semigroupoids }: mkDerivation { pname = "nonemptymap"; - version = "0.0.4.0"; - sha256 = "0rkdhbg0bps8ws20xspw98fkmbcgzfir9kk5pxwir8x6pwwbfd8h"; + version = "0.0.6.0"; + sha256 = "1pzs51kmsyarv62qqbskhw2xlkjp74bwcgs9a8ri1jk96m64rg94"; libraryHaskellDepends = [ base containers semigroupoids ]; description = "A NonEmptyMap Implementation"; license = stdenv.lib.licenses.bsd3; @@ -153010,17 +154960,21 @@ self: { }) {}; "nuxeo" = callPackage - ({ mkDerivation, attoparsec, base, bytestring, conduit - , conduit-extra, text, time + ({ mkDerivation, aeson, attoparsec, base, bytestring, conduit + , conduit-extra, http-conduit, http-types, optparse-applicative + , text, time, url }: mkDerivation { pname = "nuxeo"; - version = "0.2.0.3"; - sha256 = "1assz03rv0vdbgl2ihcr7sbx7ifsv7m2mp6lg2jgy5h0ghnlwzcd"; + version = "0.3.2"; + sha256 = "0m0rnrcay92vi47dd6cbba5vdjzdrmwb9s7wic95cbsb7wmajc72"; + isLibrary = true; + isExecutable = true; libraryHaskellDepends = [ - attoparsec base bytestring conduit conduit-extra text time + aeson attoparsec base bytestring conduit conduit-extra http-conduit + http-types text time url ]; - description = "Nuxeo"; + executableHaskellDepends = [ base optparse-applicative text ]; license = stdenv.lib.licenses.bsd3; }) {}; @@ -153262,6 +155216,31 @@ self: { license = stdenv.lib.licenses.gpl3; }) {}; + "oauth2-jwt-bearer" = callPackage + ({ mkDerivation, aeson, async, base, bytestring, cryptonite + , hedgehog, http-client, http-client-tls, http-types, jose, lens + , mmorph, network, Spock-core, streaming-commons, text, time + , transformers, transformers-bifunctors, unordered-containers, warp + , x509, x509-store + }: + mkDerivation { + pname = "oauth2-jwt-bearer"; + version = "0.0.1"; + sha256 = "0fcq0ggzhjpr8v2s0k6izjs1pp0lcbf7kb12vmclyy5bzby8vkcn"; + libraryHaskellDepends = [ + aeson base bytestring http-client http-client-tls http-types jose + lens text time transformers transformers-bifunctors + unordered-containers + ]; + testHaskellDepends = [ + aeson async base bytestring cryptonite hedgehog http-client + http-client-tls http-types jose mmorph network Spock-core + streaming-commons text warp x509 x509-store + ]; + description = "OAuth2 jwt-bearer client flow as per rfc7523"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "oauthenticated" = callPackage ({ mkDerivation, aeson, base, base64-bytestring, blaze-builder , bytestring, case-insensitive, cryptonite, exceptions, hspec @@ -154027,6 +156006,22 @@ self: { license = stdenv.lib.licenses.gpl3; }) {}; + "once_0_3" = callPackage + ({ mkDerivation, base, containers, hashable, template-haskell + , unordered-containers + }: + mkDerivation { + pname = "once"; + version = "0.3"; + sha256 = "1i5yf5d6c33arbrvvyk2bcp9cz8aj62zhd6sgxqz684baidn5rbc"; + libraryHaskellDepends = [ + base containers hashable template-haskell unordered-containers + ]; + description = "memoization for IO actions and functions"; + license = stdenv.lib.licenses.gpl3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "one-line-aeson-text" = callPackage ({ mkDerivation, aeson, base, doctest, text, unordered-containers }: @@ -154181,20 +156176,21 @@ self: { ({ mkDerivation, aeson, base, base16-bytestring, bytestring , case-insensitive, containers, contravariant, dotenv, hspec , hspec-discover, multiset, postgresql-simple, pretty - , product-profunctors, profunctors, QuickCheck, semigroups, text - , time, time-locale-compat, transformers, uuid, void + , product-profunctors, profunctors, QuickCheck, scientific + , semigroups, text, time, time-locale-compat, transformers, uuid + , void }: mkDerivation { pname = "opaleye"; - version = "0.6.1.0"; - sha256 = "0vjiwpdrff4nrs5ww8q3j77ysrq0if20yfk4gy182lr7nzhhwz0l"; - revision = "2"; - editedCabalFile = "07yn6xzynvjz9p6mv9kzh1sz05dqqsmihznba8s9q36lixlslyag"; + version = "0.6.7003.1"; + sha256 = "1lj4vz1526l11b0mc5y7j9sxf7v6kkzl8c1jymvb1vrqj2qkgxsx"; + revision = "1"; + editedCabalFile = "0nwyz9s81hfziwy7a18gpi0663xy6cfc6fl4vx8a1vkwdyfcjjli"; libraryHaskellDepends = [ aeson base base16-bytestring bytestring case-insensitive contravariant postgresql-simple pretty product-profunctors - profunctors semigroups text time time-locale-compat transformers - uuid void + profunctors scientific semigroups text time time-locale-compat + transformers uuid void ]; testHaskellDepends = [ aeson base containers contravariant dotenv hspec hspec-discover @@ -154435,9 +156431,6 @@ self: { pname = "opencv"; version = "0.0.2.1"; sha256 = "1bwl3csl2bsgz32i7s59hb25hxj05vn9g3fa8xix9klz8kyrzam1"; - configureFlags = [ - "--with-gcc=${stdenv.cc}/bin/c++" "--with-ld=${stdenv.cc}/bin/c++" - ]; setupHaskellDepends = [ base Cabal ]; libraryHaskellDepends = [ aeson base base64-bytestring bindings-DSL bytestring containers @@ -155583,8 +157576,8 @@ self: { }: mkDerivation { pname = "order-statistic-tree"; - version = "0.1.1.0"; - sha256 = "1gcjlvb0wbjkb3vg1bsiqip3wmacpvbc3s96f0vcm67dssdaws80"; + version = "0.1.1.1"; + sha256 = "13fhnbsx95w79r7lb1mfah8hj3cp6cqpphy31ajc6gcnzbiaqgk5"; libraryHaskellDepends = [ base ]; testHaskellDepends = [ base tasty tasty-hunit tasty-quickcheck ]; benchmarkHaskellDepends = [ @@ -155627,8 +157620,8 @@ self: { ({ mkDerivation, base, containers }: mkDerivation { pname = "ordered-containers"; - version = "0.1.0"; - sha256 = "11smyc3z6xhb8j23wlgvvs8dvr82xmzpx2nhvkzazmgzrx3rf26b"; + version = "0.1.1"; + sha256 = "0m86imawwvr0bl18bbv9np8hlhs8ssn4l2dvxswa8f83fm61ai5a"; libraryHaskellDepends = [ base containers ]; description = "Set- and Map-like types that remember the order elements were inserted"; license = stdenv.lib.licenses.bsd3; @@ -155715,8 +157708,8 @@ self: { }: mkDerivation { pname = "orgmode-parse"; - version = "0.2.2"; - sha256 = "1f6wcxkln5ddaa2z7wbkp6wndgq38qv9h1wnn27gqcms02758v2r"; + version = "0.3.0"; + sha256 = "0p1lb3ba060nnr3msqzqy0ymbm4i0nkmwix8xx5zz6hir74ix3y9"; libraryHaskellDepends = [ aeson attoparsec base bytestring containers free hashable old-locale semigroups text thyme unordered-containers @@ -156613,7 +158606,7 @@ self: { maintainers = with stdenv.lib.maintainers; [ peti ]; }) {}; - "pandoc_2_3_1" = callPackage + "pandoc_2_4" = callPackage ({ mkDerivation, aeson, aeson-pretty, base, base64-bytestring , binary, blaze-html, blaze-markup, bytestring, Cabal , case-insensitive, cmark-gfm, containers, criterion, data-default @@ -156623,13 +158616,14 @@ self: { , http-types, JuicyPixels, mtl, network, network-uri, pandoc-types , parsec, process, QuickCheck, random, safe, SHA, skylighting , split, syb, tagsoup, tasty, tasty-golden, tasty-hunit - , tasty-quickcheck, temporary, texmath, text, time, unix - , unordered-containers, vector, weigh, xml, zip-archive, zlib + , tasty-quickcheck, temporary, texmath, text, time + , unicode-transforms, unix, unordered-containers, vector, weigh + , xml, zip-archive, zlib }: mkDerivation { pname = "pandoc"; - version = "2.3.1"; - sha256 = "1wf38mqny53ygpaii0vfjrk0889ya7mlsi7hvvqjakjndcyqflbl"; + version = "2.4"; + sha256 = "1kf1v7zfifh5i1hw5bwdbd78ncp946kx1s501c077vwzdzvcz2ck"; configureFlags = [ "-fhttps" "-f-trypandoc" ]; isLibrary = true; isExecutable = true; @@ -156642,8 +158636,8 @@ self: { Glob haddock-library hslua hslua-module-text HsYAML HTTP http-client http-client-tls http-types JuicyPixels mtl network network-uri pandoc-types parsec process random safe SHA skylighting - split syb tagsoup temporary texmath text time unix - unordered-containers vector xml zip-archive zlib + split syb tagsoup temporary texmath text time unicode-transforms + unix unordered-containers vector xml zip-archive zlib ]; executableHaskellDepends = [ base ]; testHaskellDepends = [ @@ -156696,6 +158690,41 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "pandoc-citeproc_0_14_8_1" = callPackage + ({ mkDerivation, aeson, aeson-pretty, attoparsec, base, bytestring + , Cabal, containers, data-default, directory, filepath, hs-bibutils + , mtl, old-locale, pandoc, pandoc-types, parsec, process, rfc5051 + , setenv, split, syb, tagsoup, temporary, text, time + , unordered-containers, vector, xml-conduit, yaml + }: + mkDerivation { + pname = "pandoc-citeproc"; + version = "0.14.8.1"; + sha256 = "04cdx0b9k3xk2ss97vws21pydxcwxffsgh7xrqrnwwc3v7jn80fz"; + isLibrary = true; + isExecutable = true; + enableSeparateDataOutput = true; + setupHaskellDepends = [ base Cabal ]; + libraryHaskellDepends = [ + aeson base bytestring containers data-default directory filepath + hs-bibutils mtl old-locale pandoc pandoc-types parsec rfc5051 + setenv split syb tagsoup text time unordered-containers vector + xml-conduit yaml + ]; + executableHaskellDepends = [ + aeson aeson-pretty attoparsec base bytestring filepath pandoc + pandoc-types syb text yaml + ]; + testHaskellDepends = [ + aeson base bytestring containers directory filepath mtl pandoc + pandoc-types process temporary text yaml + ]; + doCheck = false; + description = "Supports using pandoc with citeproc"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "pandoc-citeproc-preamble" = callPackage ({ mkDerivation, base, directory, filepath, pandoc-types, process }: @@ -156933,8 +158962,8 @@ self: { }: mkDerivation { pname = "pandoc-pyplot"; - version = "1.0.2.0"; - sha256 = "0q6qj45g8d95z86lqkwpxw7c929x7q68611602mp2ip31dib11xc"; + version = "1.0.3.0"; + sha256 = "0nzpww21j79s1ww2q26856m6zq325pz32jjd4hanki7ch0ni2kg2"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -156985,31 +159014,8 @@ self: { }: mkDerivation { pname = "pandoc-types"; - version = "1.17.5.2"; - sha256 = "0hppl6drhl4xqav35jybji8g8cpy336mqkp0zb66kdsjya9inpqb"; - libraryHaskellDepends = [ - aeson base bytestring containers deepseq ghc-prim QuickCheck syb - transformers - ]; - testHaskellDepends = [ - aeson base bytestring containers HUnit QuickCheck string-qq syb - test-framework test-framework-hunit test-framework-quickcheck2 - ]; - benchmarkHaskellDepends = [ base criterion ]; - description = "Types for representing a structured document"; - license = stdenv.lib.licenses.bsd3; - }) {}; - - "pandoc-types_1_17_5_3" = callPackage - ({ mkDerivation, aeson, base, bytestring, containers, criterion - , deepseq, ghc-prim, HUnit, QuickCheck, string-qq, syb - , test-framework, test-framework-hunit, test-framework-quickcheck2 - , transformers - }: - mkDerivation { - pname = "pandoc-types"; - version = "1.17.5.3"; - sha256 = "1yrbad67jz8mgdyhl2hvah42g31iwnbvldp16jw87v96y0cbdl72"; + version = "1.17.5.4"; + sha256 = "09wk2zskr0r2llsyif3s0x7vix05l1ya7qacsmmkrlhba5naib1j"; libraryHaskellDepends = [ aeson base bytestring containers deepseq ghc-prim QuickCheck syb transformers @@ -157021,7 +159027,6 @@ self: { benchmarkHaskellDepends = [ base criterion ]; description = "Types for representing a structured document"; license = stdenv.lib.licenses.bsd3; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "pandoc-unlit" = callPackage @@ -157683,8 +159688,8 @@ self: { pname = "parallel-io"; version = "0.3.3"; sha256 = "0i86x3bf8pjlg6mdg1zg5lcrjpg75pbqs2mrgrbp4z4bkcmw051s"; - revision = "1"; - editedCabalFile = "1vlb2x1ghih4l64031rmh7h643c3knh5r5mwilf7g8izb58ypvkm"; + revision = "2"; + editedCabalFile = "0mggzni708nzxlsjbibdzf03s3b5lnqj2zi1hnbh1rd4j4jr07ym"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -158321,8 +160326,8 @@ self: { }: mkDerivation { pname = "parsers-megaparsec"; - version = "0.1.0.0"; - sha256 = "1xn12jbxv72hgkp9xarm9nr9rpqcijlyma47y31jz985r32nhaxj"; + version = "0.1.0.1"; + sha256 = "1fgxnxv5ispf7zg40fa35f1n7x7mk1pc8r96sbqpjbzasga79rx8"; libraryHaskellDepends = [ base fail megaparsec mtl parsers semigroups text transformers ]; @@ -158672,8 +160677,8 @@ self: { }: mkDerivation { pname = "patat"; - version = "0.8.0.0"; - sha256 = "1xbddlc73b0sgd02vxkbhra04wz77q0dn1937k6aq5l1vx663i81"; + version = "0.8.1.2"; + sha256 = "0lvgb0jl0bfzjqpap3gxlhn0mhbwbd15h33l1idpghxqpmzgvczy"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ @@ -159300,12 +161305,14 @@ self: { pname = "pcre-heavy"; version = "1.0.0.2"; sha256 = "1lfbjgvl55jh226n307c2w8mrb3l1myzbkjh4j0jfcb8nybzcp4a"; + revision = "1"; + editedCabalFile = "14pprgwxkiaji3rqhsm0fv454wic6qxm7vy4a475yigadb1vz1ls"; libraryHaskellDepends = [ base base-compat bytestring pcre-light semigroups string-conversions template-haskell ]; testHaskellDepends = [ base doctest Glob ]; - description = "A regexp library on top of pcre-light you can actually use"; + description = "A regexp (regex) library on top of pcre-light you can actually use"; license = stdenv.lib.licenses.publicDomain; }) {}; @@ -160195,6 +162202,23 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "persist" = callPackage + ({ mkDerivation, base, bytestring, containers, QuickCheck + , test-framework, test-framework-quickcheck2, text + }: + mkDerivation { + pname = "persist"; + version = "0.1.1.0"; + sha256 = "1rk0pgy3dk9aq17p1kn2pzhppvpjzcs9righ3n7xchmsmiqqs2ji"; + libraryHaskellDepends = [ base bytestring containers text ]; + testHaskellDepends = [ + base bytestring QuickCheck test-framework + test-framework-quickcheck2 text + ]; + description = "Minimal serialization library with focus on performance"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "persist2er" = callPackage ({ mkDerivation, base, optparse-applicative, persistent, text }: mkDerivation { @@ -160911,6 +162935,27 @@ self: { maintainers = with stdenv.lib.maintainers; [ psibi ]; }) {}; + "persistent-template-classy" = callPackage + ({ mkDerivation, base, lens, persistent, persistent-sqlite + , persistent-template, template-haskell, text + }: + mkDerivation { + pname = "persistent-template-classy"; + version = "0.1.0.1"; + sha256 = "0ph5cfm5gj6qydv70s9bmb5ynymqnrhqiwcqpd0s87xj2iv9v46a"; + libraryHaskellDepends = [ + base lens persistent persistent-sqlite persistent-template + template-haskell text + ]; + testHaskellDepends = [ + base lens persistent persistent-sqlite persistent-template + template-haskell text + ]; + description = "Generate classy lens field accessors for persistent models"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "persistent-test" = callPackage ({ mkDerivation, aeson, aeson-compat, attoparsec, base , base64-bytestring, blaze-builder, blaze-html, blaze-markup @@ -161982,8 +164027,8 @@ self: { }: mkDerivation { pname = "pinch"; - version = "0.3.3.0"; - sha256 = "0bhds7k9bsma1bvihvz6qf832gi2krak3yd8lnddcv87hnjsr4hq"; + version = "0.3.4.0"; + sha256 = "10rmk6f9cb2l7dyybwpbin0i5dqdg59d17m627kj9abyrlhcyf8a"; libraryHaskellDepends = [ array base bytestring containers deepseq ghc-prim hashable semigroups text unordered-containers vector @@ -162759,6 +164804,8 @@ self: { pname = "pipes-lzma"; version = "0.1.1.2"; sha256 = "0wx23wf1vr8d2nyapxgmpn1jk53hjbla1xss714vkmar7am37vrc"; + revision = "1"; + editedCabalFile = "13nyh3qqv3baifya0vwnnqh1yvr3k2yjrhjq7apigq0s584iyrka"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ base bytestring lzma pipes ]; @@ -162956,18 +165003,16 @@ self: { "pipes-s3" = callPackage ({ mkDerivation, aws, base, bytestring, exceptions, http-client , http-client-tls, http-types, pipes, pipes-bytestring, pipes-safe - , QuickCheck, resourcet, tasty, tasty-quickcheck, text + , QuickCheck, resourcet, semigroups, tasty, tasty-quickcheck, text , transformers }: mkDerivation { pname = "pipes-s3"; - version = "0.3.0.3"; - sha256 = "16gm7xjc8vbbajwmq91fj1l5cgd6difrz5g30b8czac4gdgqfppa"; - revision = "3"; - editedCabalFile = "14cz2sfyz0q0jrpjwj9a25flvcm7mhjhihg4pr356niyvnx1b01p"; + version = "0.3.1"; + sha256 = "1z32mgx3w5xiiaxcc22v492f03xlgkprn3pv1hqfqcfgsnxqbj5l"; libraryHaskellDepends = [ aws base bytestring http-client http-client-tls http-types pipes - pipes-bytestring pipes-safe resourcet text transformers + pipes-bytestring pipes-safe resourcet semigroups text transformers ]; testHaskellDepends = [ base bytestring exceptions pipes pipes-bytestring pipes-safe @@ -163264,6 +165309,27 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "pixela" = callPackage + ({ mkDerivation, aeson, base, bytestring, data-default, http-client + , http-client-tls, http-types, split, text, unordered-containers + , uri-encode, vector + }: + mkDerivation { + pname = "pixela"; + version = "0.2.1.0"; + sha256 = "15bzvwd1dh27p1gs6kfilk34gfkbczz43w70xagk60hvf1mdlcxl"; + libraryHaskellDepends = [ + aeson base bytestring data-default http-client http-client-tls + http-types split text unordered-containers uri-encode vector + ]; + testHaskellDepends = [ + aeson base bytestring data-default http-client http-client-tls + http-types split text unordered-containers uri-encode vector + ]; + description = "Pixela client"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "pixelated-avatar-generator" = callPackage ({ mkDerivation, async, base, bytestring, cli, hspec, JuicyPixels , pureMD5, QuickCheck, random, split @@ -163555,6 +165621,7 @@ self: { ]; description = "Planet Mitchell"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "plankton" = callPackage @@ -163877,6 +165944,23 @@ self: { license = stdenv.lib.licenses.mit; }) {}; + "plotlyhs_0_2_1" = callPackage + ({ mkDerivation, aeson, base, blaze-html, blaze-markup, bytestring + , lucid, microlens, microlens-th, text, time + }: + mkDerivation { + pname = "plotlyhs"; + version = "0.2.1"; + sha256 = "1d7cqy22myp6r0x0b00amn64fra0lklb9jy2hd8ic9lxg0nd8pn9"; + libraryHaskellDepends = [ + aeson base blaze-html blaze-markup bytestring lucid microlens + microlens-th text time + ]; + description = "Haskell bindings to Plotly.js"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "ploton" = callPackage ({ mkDerivation, base, hspec, optparse-applicative, process, split , transformers @@ -164607,6 +166691,18 @@ self: { license = "LGPL"; }) {}; + "polyparse_1_12_1" = callPackage + ({ mkDerivation, base, bytestring, text }: + mkDerivation { + pname = "polyparse"; + version = "1.12.1"; + sha256 = "19fs18g7fvfdkm9zy28cgighjcxfa6mcpqgyp6whmsjkb3h393fx"; + libraryHaskellDepends = [ base bytestring text ]; + description = "A variety of alternative parser combinator libraries"; + license = "LGPL"; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "polyseq" = callPackage ({ mkDerivation, array, base, bytestring, cgi, containers , free-theorems, haskell-src, mtl, network, old-locale, old-time @@ -164970,6 +167066,18 @@ self: { license = stdenv.lib.licenses.mit; }) {}; + "port-utils" = callPackage + ({ mkDerivation, async, base, hspec, network, stm, transformers }: + mkDerivation { + pname = "port-utils"; + version = "0.2.0.0"; + sha256 = "1lvalwbizmvrrpbl2l1lblbv0c3qln1ln61x61zn26jxq2h8p7g1"; + libraryHaskellDepends = [ base network ]; + testHaskellDepends = [ async base hspec network stm transformers ]; + description = "Utilities for creating and waiting on ports"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "portable-lines" = callPackage ({ mkDerivation, base, bytestring }: mkDerivation { @@ -165308,18 +167416,18 @@ self: { }) {}; "postgres-websockets" = callPackage - ({ mkDerivation, aeson, ansi-wl-pprint, base, base64-bytestring - , bytestring, configurator, containers, contravariant, either - , hasql, hasql-pool, heredoc, hspec, hspec-wai, hspec-wai-json - , http-types, jose, jwt, lens, lens-aeson, optparse-applicative - , postgresql-libpq, protolude, retry, stm, stm-containers - , stringsearch, text, time, transformers, unordered-containers, wai - , wai-app-static, wai-extra, wai-websockets, warp, websockets + ({ mkDerivation, aeson, base, base64-bytestring, bytestring + , containers, contravariant, either, envparse, hasql, hasql-pool + , hspec, hspec-wai, hspec-wai-json, http-types, jose, jwt, lens + , lens-aeson, postgresql-libpq, protolude, retry, stm + , stm-containers, stringsearch, text, time, transformers + , unordered-containers, wai, wai-app-static, wai-extra + , wai-websockets, warp, websockets }: mkDerivation { pname = "postgres-websockets"; - version = "0.4.2.1"; - sha256 = "0jh4ms9lz456as24v9d4vqj2b52i9gw7svk5lzvb65nhfdpb4kfp"; + version = "0.5.0.1"; + sha256 = "0afhrzhixy0f31050jb04w8np6935wcl3j7ckbk0dm23mqz2z3zy"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -165329,9 +167437,8 @@ self: { unordered-containers wai wai-websockets websockets ]; executableHaskellDepends = [ - ansi-wl-pprint base base64-bytestring bytestring configurator hasql - hasql-pool heredoc optparse-applicative protolude text time - transformers wai wai-app-static wai-extra warp + base base64-bytestring bytestring envparse hasql hasql-pool + protolude text time transformers wai wai-app-static wai-extra warp ]; testHaskellDepends = [ aeson base containers hasql hasql-pool hspec hspec-wai @@ -166999,14 +169106,14 @@ self: { license = stdenv.lib.licenses.mit; }) {}; - "pretty-show_1_8_2" = callPackage + "pretty-show_1_9_2" = callPackage ({ mkDerivation, array, base, filepath, ghc-prim, happy , haskell-lexer, pretty, text }: mkDerivation { pname = "pretty-show"; - version = "1.8.2"; - sha256 = "1fc431kr87hpk3rmdpbdiwsq0iyvh61hjwi4w0cp6zyasx8cg91a"; + version = "1.9.2"; + sha256 = "01vqa5z364cgj73360rpb4rcysfgfyil9l7gxfp96vzcca3gi37a"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; @@ -168915,6 +171022,19 @@ self: { license = stdenv.lib.licenses.bsd3; }) {inherit (pkgs) libpulseaudio;}; + "proteome" = callPackage + ({ mkDerivation, base, nvim-hs }: + mkDerivation { + pname = "proteome"; + version = "0.1.0.0"; + sha256 = "13c4hrgc1vxvwmzw49djvp22y80z2cndqbqcd4fy4rm6hd6zbs81"; + isLibrary = false; + isExecutable = true; + executableHaskellDepends = [ base nvim-hs ]; + description = "neovim project manager"; + license = stdenv.lib.licenses.mit; + }) {}; + "proto-lens_0_2_2_0" = callPackage ({ mkDerivation, attoparsec, base, bytestring, containers , data-default-class, lens-family, parsec, pretty, text @@ -170298,8 +172418,8 @@ self: { }: mkDerivation { pname = "purescript-iso"; - version = "0.0.3"; - sha256 = "15y761jk2r95gdkv85p7ij9npf3a6dlsyidf8y8djzk3m7j8ya2g"; + version = "0.0.4"; + sha256 = "1yqr8yfrc8vjn6h1wsfn0167ca6xj9wcl5a46zn9dklpkx995zyq"; libraryHaskellDepends = [ aeson aeson-attoparsec aeson-diff async attoparsec attoparsec-uri base bytestring containers deepseq emailaddress monad-control mtl @@ -171627,14 +173747,24 @@ self: { ({ mkDerivation, base, QuickCheck, unfoldable-restricted }: mkDerivation { pname = "quickcheck-combinators"; - version = "0.0.4"; - sha256 = "0i5hv58b8vgqbmwb7j8c9xr6qv0v5n2zjh3a9rab8x6hsdlb0mvv"; + version = "0.0.5"; + sha256 = "0qdjls949kmcv8wj3a27p4dz8nb1dq4i99zizkw7qyqn47r9ccxd"; libraryHaskellDepends = [ base QuickCheck unfoldable-restricted ]; - description = "Simple type-level combinators for augmenting QuickCheck instances"; license = stdenv.lib.licenses.bsd3; hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "quickcheck-enum-instances" = callPackage + ({ mkDerivation, base, enum-types, QuickCheck }: + mkDerivation { + pname = "quickcheck-enum-instances"; + version = "0.1.0.0"; + sha256 = "117lpk15z288ad1bzakwf1z0jcdm7w5c0584lzwpgkmgqr3jgzdc"; + libraryHaskellDepends = [ base enum-types QuickCheck ]; + description = "arbitrary instances for small enum types"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "quickcheck-instances" = callPackage ({ mkDerivation, array, base, base-compat, bytestring , case-insensitive, containers, hashable, old-time, QuickCheck @@ -173287,6 +175417,25 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "rank2classes_1_2" = callPackage + ({ mkDerivation, base, distributive, doctest, tasty, tasty-hunit + , template-haskell, transformers + }: + mkDerivation { + pname = "rank2classes"; + version = "1.2"; + sha256 = "1qaqsg4xfvhdvffr42y1r95lkvm2spj27pwxz4vrhkxq56fkbj2p"; + libraryHaskellDepends = [ + base distributive template-haskell transformers + ]; + testHaskellDepends = [ + base distributive doctest tasty tasty-hunit + ]; + description = "standard type constructor class hierarchy, only with methods of rank 2 types"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "rapid" = callPackage ({ mkDerivation, async, base, containers, foreign-store, stm }: mkDerivation { @@ -173603,6 +175752,28 @@ self: { license = stdenv.lib.licenses.mit; }) {}; + "ratel_1_0_6" = callPackage + ({ mkDerivation, aeson, base, bytestring, case-insensitive + , containers, filepath, hspec, http-client, http-client-tls + , http-types, text, uuid + }: + mkDerivation { + pname = "ratel"; + version = "1.0.6"; + sha256 = "0bqgkijadr3zhmnq787k6bkqg96di3fbrb3ywlypns624mhwcw37"; + libraryHaskellDepends = [ + aeson base bytestring case-insensitive containers http-client + http-client-tls http-types text uuid + ]; + testHaskellDepends = [ + aeson base bytestring case-insensitive containers filepath hspec + http-client http-client-tls http-types text uuid + ]; + description = "Notify Honeybadger about exceptions"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "ratel-wai" = callPackage ({ mkDerivation, base, bytestring, case-insensitive, containers , http-client, ratel, wai @@ -173618,6 +175789,22 @@ self: { license = stdenv.lib.licenses.mit; }) {}; + "ratel-wai_1_0_4" = callPackage + ({ mkDerivation, base, bytestring, case-insensitive, containers + , http-client, ratel, wai + }: + mkDerivation { + pname = "ratel-wai"; + version = "1.0.4"; + sha256 = "1cri461f40xa43kwg3wq5k98irfqypsi97xdk9n60yqhc8msca4m"; + libraryHaskellDepends = [ + base bytestring case-insensitive containers http-client ratel wai + ]; + description = "Notify Honeybadger about exceptions via a WAI middleware"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "rating-systems" = callPackage ({ mkDerivation, base }: mkDerivation { @@ -173670,15 +175857,16 @@ self: { license = stdenv.lib.licenses.mit; }) {}; - "rattletrap_6_0_1" = callPackage + "rattletrap_6_0_2" = callPackage ({ mkDerivation, aeson, aeson-pretty, base, binary, binary-bits - , bytestring, containers, filepath, http-client, http-client-tls - , HUnit, template-haskell, temporary, text, transformers + , bytestring, clock, containers, filepath, http-client + , http-client-tls, HUnit, template-haskell, temporary, text + , transformers }: mkDerivation { pname = "rattletrap"; - version = "6.0.1"; - sha256 = "1chpivz9iprnj5p3kbqsgpviqg5d3dx41596ki1dydm1wmpn3bcj"; + version = "6.0.2"; + sha256 = "1904g1s61zazhg6zn189m7y9v5aap39zd0gfypzd9jrk6489aqi1"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -173692,9 +175880,9 @@ self: { transformers ]; testHaskellDepends = [ - aeson aeson-pretty base binary binary-bits bytestring containers - filepath http-client http-client-tls HUnit template-haskell - temporary text transformers + aeson aeson-pretty base binary binary-bits bytestring clock + containers filepath http-client http-client-tls HUnit + template-haskell temporary text transformers ]; description = "Parse and generate Rocket League replays"; license = stdenv.lib.licenses.mit; @@ -174938,8 +177126,8 @@ self: { pname = "recursion-schemes"; version = "5.0.3"; sha256 = "17x0kjl3yqanx234mb838yy21gw4if6qgzpi5l0b17m8llvp086v"; - revision = "2"; - editedCabalFile = "13n38bchrkkijvy6jvhjskqn1b2kahfa9rvjvjcdn4bih4ylivk7"; + revision = "3"; + editedCabalFile = "05fvpi3dc44h2a097fb9cq1jqdjq2b3sdf5hzfn9g00bid37bb5q"; libraryHaskellDepends = [ base base-orphans comonad free template-haskell th-abstraction transformers @@ -176955,25 +179143,21 @@ self: { license = stdenv.lib.licenses.mit; }) {}; - "relude_0_3_0" = callPackage + "relude_0_4_0" = callPackage ({ mkDerivation, base, bytestring, containers, deepseq, doctest , gauge, ghc-prim, Glob, hashable, hedgehog, mtl, stm, tasty , tasty-hedgehog, text, transformers, unordered-containers - , utf8-string }: mkDerivation { pname = "relude"; - version = "0.3.0"; - sha256 = "10cbgz1xzw67q3y9fw8px7wwxblv5qym51qpdljmjz4ilpy0k35j"; - revision = "1"; - editedCabalFile = "04jfgc38pwrqir1j91l8jfzsp0hzggxr7kmbnfqcgrlpqidpj7mh"; + version = "0.4.0"; + sha256 = "03z8ji8hssb811d1xvmv2zlnq7h7dsr801x05xydhfl1srbg5i9f"; libraryHaskellDepends = [ base bytestring containers deepseq ghc-prim hashable mtl stm text - transformers unordered-containers utf8-string + transformers unordered-containers ]; testHaskellDepends = [ base bytestring doctest Glob hedgehog tasty tasty-hedgehog text - utf8-string ]; benchmarkHaskellDepends = [ base containers gauge unordered-containers @@ -178053,10 +180237,8 @@ self: { }: mkDerivation { pname = "resolv"; - version = "0.1.1.1"; - sha256 = "0wh7wj56l3f2bylz563g5g04a4nydj8acv60hpwa7k3mn792xca9"; - revision = "3"; - editedCabalFile = "0r1i7zrnynqxd3nzq4cz9648s3dmj29w63mcip57620d0fimyghm"; + version = "0.1.1.2"; + sha256 = "0wczdy3vmpfcfwjn1m95bygc5d83m97xxmavhdvy5ayn8c402fp4"; libraryHaskellDepends = [ base base16-bytestring binary bytestring containers ]; @@ -178064,7 +180246,7 @@ self: { base bytestring directory filepath tasty tasty-hunit ]; description = "Domain Name Service (DNS) lookup via the libresolv standard library routines"; - license = stdenv.lib.licenses.gpl3; + license = stdenv.lib.licenses.gpl2; }) {}; "resolve" = callPackage @@ -180042,6 +182224,26 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "ron" = callPackage + ({ mkDerivation, aeson, attoparsec, base, binary, bytestring + , containers, criterion, data-default, deepseq, Diff, errors, extra + , hashable, mtl, safe, stringsearch, template-haskell, text, time + , unordered-containers, vector + }: + mkDerivation { + pname = "ron"; + version = "0.1"; + sha256 = "1dwi0yyqzrwsl3x359hdpa5x77jqmbdidy0lx2wx2xlg0yzf5cfv"; + libraryHaskellDepends = [ + aeson attoparsec base binary bytestring containers data-default + deepseq Diff errors extra hashable mtl safe stringsearch + template-haskell text time unordered-containers vector + ]; + benchmarkHaskellDepends = [ base criterion deepseq ]; + description = "RON, RON-RDT, and RON-Schema"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "roots" = callPackage ({ mkDerivation, base, tagged }: mkDerivation { @@ -180306,6 +182508,24 @@ self: { license = stdenv.lib.licenses.mit; }) {}; + "rounded" = callPackage + ({ mkDerivation, base, ghc-prim, gmp, hgmp, long-double, mpfr + , reflection, singletons + }: + mkDerivation { + pname = "rounded"; + version = "0.1.0.1"; + sha256 = "04abl192vq1xq7kf9fackcb17wjyxw4068fsks3pxm9dd4iymgls"; + libraryHaskellDepends = [ + base ghc-prim hgmp long-double reflection singletons + ]; + librarySystemDepends = [ gmp mpfr ]; + testHaskellDepends = [ base long-double ]; + description = "Correctly-rounded arbitrary-precision floating-point arithmetic"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {inherit (pkgs) gmp; inherit (pkgs) mpfr;}; + "rounding" = callPackage ({ mkDerivation, array, base, numeric-extras }: mkDerivation { @@ -180757,6 +182977,17 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "rstream" = callPackage + ({ mkDerivation, base, ghc-prim }: + mkDerivation { + pname = "rstream"; + version = "0.1.0.0"; + sha256 = "14l2jww91w993b61xn1m9y9wh27dvy1l1x2fh7g9f0l8mc5a9dpv"; + libraryHaskellDepends = [ base ghc-prim ]; + description = "stream-fusion framework from vector"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "rtcm" = callPackage ({ mkDerivation, aeson, array, base, base64-bytestring , basic-prelude, binary, binary-bits, binary-conduit, bytestring @@ -182093,18 +184324,15 @@ self: { "sandi" = callPackage ({ mkDerivation, base, bytestring, conduit, criterion, exceptions - , HUnit, stringsearch, tasty, tasty-hunit, tasty-quickcheck - , tasty-th + , tasty, tasty-hunit, tasty-quickcheck, tasty-th }: mkDerivation { pname = "sandi"; - version = "0.4.2"; - sha256 = "0dvkpk91n9kz2ha04rvp231ra9sgd1ilyc1qkzf9l03iir7zrh9b"; - libraryHaskellDepends = [ - base bytestring conduit exceptions stringsearch - ]; + version = "0.4.3"; + sha256 = "0ji1zn9nkh8rdm0m9zpxdnz5zw0q0qypzyp2k9fn6j9v08r17p3n"; + libraryHaskellDepends = [ base bytestring conduit exceptions ]; testHaskellDepends = [ - base bytestring HUnit tasty tasty-hunit tasty-quickcheck tasty-th + base bytestring tasty tasty-hunit tasty-quickcheck tasty-th ]; benchmarkHaskellDepends = [ base bytestring criterion ]; description = "Data encoding library"; @@ -183387,6 +185615,18 @@ self: { license = stdenv.lib.licenses.mit; }) {}; + "scotty-path-normalizer" = callPackage + ({ mkDerivation, base, bytestring, doctest, scotty, text, wai }: + mkDerivation { + pname = "scotty-path-normalizer"; + version = "0.1.0.0"; + sha256 = "1hv95q3ikf25d9kxzr48fxb2x1331c24n3q5nb47qa7866gy2f4q"; + libraryHaskellDepends = [ base bytestring scotty text wai ]; + testHaskellDepends = [ base doctest ]; + description = "Redirect to a normalized path"; + license = stdenv.lib.licenses.mit; + }) {}; + "scotty-resource" = callPackage ({ mkDerivation, base, containers, http-types, scotty, text , transformers, wai @@ -184200,8 +186440,8 @@ self: { }: mkDerivation { pname = "secp256k1-haskell"; - version = "0.1.3"; - sha256 = "0wdxz8vmk5yfhjrwpynk1zpmvgl1rnwz7zvkx7g7pxxvz3z8rpbz"; + version = "0.1.4"; + sha256 = "1vfbn0fvrbk4hmfhsm8gj3yxyijzfdqlywwir64zrafla4yry73l"; libraryHaskellDepends = [ base base16-bytestring bytestring cereal entropy hashable QuickCheck string-conversions @@ -184923,8 +187163,8 @@ self: { }: mkDerivation { pname = "sensu-run"; - version = "0.6.0.2"; - sha256 = "1lxz3cr04f4bqlm4jph66ckab494vqlaf6jc67dbmmwia6if2fpw"; + version = "0.6.0.3"; + sha256 = "0zipxs3l99ppaxwsvidjycm7mfyvqll88vrn6ajdpdcbmv1c5vc4"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ @@ -185072,8 +187312,8 @@ self: { ({ mkDerivation, base, mtl, transformers }: mkDerivation { pname = "seqid"; - version = "0.5.3"; - sha256 = "1wc7a66k42njc0zv0cp4ycfv7jbcqyf77j9m6fikhdppbvn3cbn4"; + version = "0.6.0"; + sha256 = "1zm1zmzp3i60wb17ghr4rp5ljlhvsblll69x2ibjk7kh5icvwfqc"; libraryHaskellDepends = [ base mtl transformers ]; description = "Sequence ID production and consumption"; license = stdenv.lib.licenses.bsd3; @@ -185095,8 +187335,8 @@ self: { ({ mkDerivation, base, io-streams, seqid }: mkDerivation { pname = "seqid-streams"; - version = "0.6.3"; - sha256 = "1wmi4iqh6q45cm1s9ml2yi5b34m8cj7y5a0aicjfsc8nyy0pq48r"; + version = "0.7.0"; + sha256 = "0z80cclvzkr6dg81n96dpan9a7285rlq9nmchiy4raxsjw4cza58"; libraryHaskellDepends = [ base io-streams seqid ]; description = "Sequence ID IO-Streams"; license = stdenv.lib.licenses.bsd3; @@ -185452,6 +187692,8 @@ self: { pname = "servant-JuicyPixels"; version = "0.3.0.4"; sha256 = "10crrcrxap7751wifbc28kr1kv0rjvrx3wlnkajgv3xpr05g00kv"; + revision = "1"; + editedCabalFile = "185ym0ac6gx7f98pd92ykc1ib305lswzjzvykly4ij9vk85jn0ax"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -185496,6 +187738,8 @@ self: { pname = "servant-auth"; version = "0.3.2.0"; sha256 = "12s1m7vqp0ka8nani4cnrb6fad2y5mxji95bba2b6b07ih8xbd3v"; + revision = "1"; + editedCabalFile = "10ss4v45lclf5n0k6rch22zzs59v7p5ppd04dbc97pqxiygpbnd9"; libraryHaskellDepends = [ base ]; description = "Authentication combinators for servant"; license = stdenv.lib.licenses.bsd3; @@ -185512,6 +187756,8 @@ self: { pname = "servant-auth-client"; version = "0.3.3.0"; sha256 = "1pxkwpg1in3anamfvrp8gd7iihng0ikhl4k7ymz5d75ma1qwa2j9"; + revision = "1"; + editedCabalFile = "0jd1frgvghd9zp0rzzar9xxvj6qwg1l7f0zv7977rf6v930fqhw9"; libraryHaskellDepends = [ base bytestring containers servant servant-auth servant-client-core text @@ -185566,8 +187812,8 @@ self: { pname = "servant-auth-docs"; version = "0.2.10.0"; sha256 = "0j1ynnrb6plrhpb2vzs2p7a9jb41llp0j1jwgap7hjhkwhyc7wxd"; - revision = "1"; - editedCabalFile = "0rg38ibrw110c3dllqda7badbf6y89g2ilqybkzipyprwkg8s69x"; + revision = "2"; + editedCabalFile = "0309a6pc8jj24xwqmzj1yslgij9g212hnaqh2qkcvlm6k6riffil"; setupHaskellDepends = [ base Cabal cabal-doctest ]; libraryHaskellDepends = [ base lens servant servant-auth servant-docs text @@ -185649,7 +187895,7 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; - "servant-auth-server_0_4_1_0" = callPackage + "servant-auth-server_0_4_2_0" = callPackage ({ mkDerivation, aeson, base, base64-bytestring, blaze-builder , bytestring, bytestring-conversion, case-insensitive, cookie , crypto-api, data-default-class, entropy, hspec, hspec-discover @@ -185660,8 +187906,8 @@ self: { }: mkDerivation { pname = "servant-auth-server"; - version = "0.4.1.0"; - sha256 = "1fxh50fjrdi5j88qs2vsrflqdwq3pc8s5h424nhjrpc24w277bqi"; + version = "0.4.2.0"; + sha256 = "000szizds1c8amxm7gl75gpwrlj38gv665bhp59d35wcq03na4ap"; libraryHaskellDepends = [ aeson base base64-bytestring blaze-builder bytestring bytestring-conversion case-insensitive cookie crypto-api @@ -185688,6 +187934,8 @@ self: { pname = "servant-auth-swagger"; version = "0.2.10.0"; sha256 = "04ndbbhdmpgb8yshki6q2j46a5q8fzvlb4nn8x8gv0mqkriq79sh"; + revision = "1"; + editedCabalFile = "105rniz4cmmwr0ynyv75s4ap1fgfwxy2k5mvvj66gwpvzmj55cnx"; libraryHaskellDepends = [ base lens servant servant-auth servant-swagger swagger2 text ]; @@ -185921,8 +188169,8 @@ self: { pname = "servant-client"; version = "0.14"; sha256 = "0jr2057y7vp6d2jcnisawkajinnqm68h024crh929r9fdka0p1n6"; - revision = "2"; - editedCabalFile = "087ja0xbwm1yg38i5pc26fxsjx4pfdcgqmw0h1lvf0z1alz8rq05"; + revision = "3"; + editedCabalFile = "1rjjqxyyf51bjq8li8yilng5pjd9a5n3d8zniqmfw3hys6dz8n8g"; libraryHaskellDepends = [ base base-compat bytestring containers exceptions http-client http-media http-types monad-control mtl semigroupoids @@ -185951,8 +188199,8 @@ self: { pname = "servant-client-core"; version = "0.14.1"; sha256 = "0qfpakwl6yj6l2br9wa9zs0v7nzmj4bngspw6p536swx39npnkn2"; - revision = "1"; - editedCabalFile = "04xr6zpslw7pyzxp22qd8k2w9azc3pds5gplnwni12waqahf410i"; + revision = "2"; + editedCabalFile = "02pvrccfwvvy53gma56jcqnbia3pm1pncyghdkjp519bwff9iwvb"; libraryHaskellDepends = [ base base-compat base64-bytestring bytestring containers exceptions free generics-sop http-api-data http-media http-types network-uri @@ -186356,8 +188604,8 @@ self: { }: mkDerivation { pname = "servant-http2-client"; - version = "0.1.0.1"; - sha256 = "0jlbczbgbkjx4hai24csnd07r074s36g5hbpizhdxiqr3dcjk8pw"; + version = "0.1.0.2"; + sha256 = "0rjzc1dyj0njmh590ays5ma6243240qakrjgzi9qinvkgb7lzad2"; libraryHaskellDepends = [ base binary bytestring case-insensitive containers exceptions http-media http-types http2 http2-client mtl servant-client-core @@ -186370,6 +188618,7 @@ self: { ]; description = "Generate HTTP2 clients from Servant API descriptions"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "servant-iCalendar" = callPackage @@ -186441,8 +188690,8 @@ self: { }: mkDerivation { pname = "servant-kotlin"; - version = "0.1.1.2"; - sha256 = "1ad1n1yp6b125fa5gjjnbksnjqf714jf9d8cvxrvpwkl9lxn9ppb"; + version = "0.1.1.3"; + sha256 = "07adjx1smqg5x87dklgknlmkavns2axmhqw97fk0jnp99rb1rpb2"; libraryHaskellDepends = [ base containers directory formatting lens servant servant-foreign text time wl-pprint-text @@ -186784,10 +189033,8 @@ self: { }: mkDerivation { pname = "servant-quickcheck"; - version = "0.0.7.2"; - sha256 = "0zsf68c44yijmgkcd2qmcwz9p0kiix6dzhk3g4ifz60s6kv3jfbh"; - revision = "1"; - editedCabalFile = "1slgq8q0hmh904ssn5sfmi6mbpd3vkqvc59m3g9kfgzf5j70py2h"; + version = "0.0.7.3"; + sha256 = "0d904xfw5q7qcwkp5n7v18drc1idssvfwic2ksfmqlxisnxmyp5r"; libraryHaskellDepends = [ aeson base base-compat-batteries bytestring case-insensitive clock data-default-class hspec http-client http-media http-types mtl @@ -187056,6 +189303,8 @@ self: { pname = "servant-streaming"; version = "0.3.0.0"; sha256 = "0k2sgh7qhp54050k6xlz4zi5jf29xnar2iv02f4rg1k5fxjlh3cq"; + revision = "1"; + editedCabalFile = "1a9lg7cxbkj658hc76r5yk104q0hm3q9mkjzk17dwkwlnvdfq6m2"; libraryHaskellDepends = [ base http-types servant ]; testHaskellDepends = [ base hspec http-types QuickCheck servant ]; description = "Servant combinators for the 'streaming' package"; @@ -187072,6 +189321,8 @@ self: { pname = "servant-streaming-client"; version = "0.3.0.0"; sha256 = "1h3haws61m064zziyzn03n0450swffmr46gsv9k88lrpz8lv5qj2"; + revision = "1"; + editedCabalFile = "07xkgnhi8aspnqms5gx67ssw5m595gda8yqypdg2q59wwc6ib68d"; libraryHaskellDepends = [ base bytestring http-media http-types resourcet servant servant-client-core servant-streaming streaming @@ -187094,6 +189345,8 @@ self: { pname = "servant-streaming-docs"; version = "0.3.0.0"; sha256 = "0jy0na8cavym2vsy1a059n0yjzfb5a0xylyzxpz0i5apafv1xvlz"; + revision = "1"; + editedCabalFile = "02majkszg6d340mq07b9xyfd200xqpq9znl2j9dxqj7d9bqkrdrz"; libraryHaskellDepends = [ base lens servant servant-docs servant-streaming ]; @@ -187111,6 +189364,8 @@ self: { pname = "servant-streaming-server"; version = "0.3.0.0"; sha256 = "0lsh3x6hkbk7p095pkp7ld0m54xlkw0101x6nrxhjvhmw13aiq66"; + revision = "1"; + editedCabalFile = "1xfx22a83xwq2bzv7gm3z9drd5hiq6wz7yyvfpjz1c2dcicwflvm"; libraryHaskellDepends = [ base bytestring http-media http-types resourcet servant servant-server servant-streaming streaming streaming-wai wai @@ -187266,6 +189521,7 @@ self: { ]; description = "Servant swagger ui: Jens-Ole Graulund theme"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "servant-swagger-ui-redoc" = callPackage @@ -187282,6 +189538,7 @@ self: { ]; description = "Servant swagger ui: ReDoc theme"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "servant-tracing" = callPackage @@ -187498,7 +189755,7 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; - "serverless-haskell_0_7_5" = callPackage + "serverless-haskell_0_8_2" = callPackage ({ mkDerivation, aeson, aeson-casing, aeson-extra, amazonka-core , amazonka-kinesis, amazonka-s3, base, bytestring, case-insensitive , hspec, hspec-discover, http-types, iproute, lens, raw-strings-qq @@ -187506,8 +189763,8 @@ self: { }: mkDerivation { pname = "serverless-haskell"; - version = "0.7.5"; - sha256 = "13l5day4dlwyykwx17v2znyh0ck1paaxjzzawnjklcjzk1rzj0i3"; + version = "0.8.2"; + sha256 = "1ia1vjiw71qkqdpbna2jgxznwlhbh184fr5m95dcyl5kwwlb3nb8"; libraryHaskellDepends = [ aeson aeson-casing aeson-extra amazonka-core amazonka-kinesis amazonka-s3 base bytestring case-insensitive http-types iproute @@ -188246,6 +190503,32 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "sh2md" = callPackage + ({ mkDerivation, base, containers, Hclip, optparse-applicative + , process, text, transformers, unix + }: + mkDerivation { + pname = "sh2md"; + version = "0.1.0.0"; + sha256 = "1yw47xzfi7yappsx2ra1a75xdxq9wfn7wrdnxflf6s9bzj9bhc1g"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + base containers Hclip optparse-applicative process text + transformers unix + ]; + executableHaskellDepends = [ + base containers Hclip optparse-applicative process text + transformers unix + ]; + testHaskellDepends = [ + base containers Hclip optparse-applicative process text + transformers unix + ]; + description = "Record your shell session and print in the markdown format"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "sha-streams" = callPackage ({ mkDerivation, base, binary, bytestring, io-streams, SHA }: mkDerivation { @@ -188435,10 +190718,8 @@ self: { }: mkDerivation { pname = "shake-ats"; - version = "1.10.0.1"; - sha256 = "1p95r4ksfrb4hs9v75iq9iz565qz43k3cw63sz32nphqn204dbxz"; - revision = "1"; - editedCabalFile = "0x23r58i4yhf9rcaxfdy09nr93cpkr0cmxrwcn11hgcr1nkzaa0d"; + version = "1.10.2.0"; + sha256 = "0kc7yy2qv4d2n3j0qwsg37ga9yyb380d6zni08l1jabrl84maly8"; libraryHaskellDepends = [ base binary dependency directory hs2ats language-ats microlens shake shake-c shake-cabal shake-ext text @@ -188795,6 +191076,21 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "shannon-fano" = callPackage + ({ mkDerivation, base, bytestring, QuickCheck, split }: + mkDerivation { + pname = "shannon-fano"; + version = "0.1.0.1"; + sha256 = "11xpz5mi1yk9zcy22fhn6j4xnyifxgn07nd6nrx588h1g6w8r2df"; + revision = "1"; + editedCabalFile = "1da8hsqrv7nz9nlkdlqvjcssfzf4r6fxdhv8lryz92d7jjjxyjcc"; + libraryHaskellDepends = [ base bytestring split ]; + testHaskellDepends = [ base QuickCheck ]; + description = "Shannon-fano compression algorithm implementation in Haskell"; + license = stdenv.lib.licenses.gpl3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "shapefile" = callPackage ({ mkDerivation, base, binary, bytestring, data-binary-ieee754, dbf , filepath, rwlock @@ -188946,8 +191242,8 @@ self: { ({ mkDerivation, base, bytestring, unix }: mkDerivation { pname = "shared-memory"; - version = "0.1.0.0"; - sha256 = "15h4j81q2v97dx61pnpaqs99z4vvlw7xl1dxbh878imxj8zn4z84"; + version = "0.2.0.0"; + sha256 = "1g1s08zjpj9xaaff3qg29k6fhnpiig9fqv9i7879yhllh50kjrr6"; libraryHaskellDepends = [ base unix ]; testHaskellDepends = [ base bytestring unix ]; description = "POSIX shared memory"; @@ -189055,8 +191351,8 @@ self: { ({ mkDerivation, base, containers, text, unix }: mkDerivation { pname = "shell-monad"; - version = "0.6.5"; - sha256 = "0vg2g65km3i963scyj7fn17g562wg0mh88syxqrf7favnljid1bk"; + version = "0.6.6"; + sha256 = "1z3anvjcix25i2zzwnln2hnpzacwiss95xhyc0mclc33v0j5k038"; libraryHaskellDepends = [ base containers text unix ]; description = "shell monad"; license = stdenv.lib.licenses.bsd3; @@ -189243,6 +191539,28 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "shh" = callPackage + ({ mkDerivation, async, base, deepseq, directory, filepath, mtl + , process, split, tasty, tasty-hunit, tasty-quickcheck + , template-haskell, unix + }: + mkDerivation { + pname = "shh"; + version = "0.1.0.0"; + sha256 = "0ixvfwrz1bsj1c2ln7fhvf6wawf75nzqfb784xgral33hmflm518"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + async base deepseq directory filepath mtl process split + template-haskell unix + ]; + executableHaskellDepends = [ base ]; + testHaskellDepends = [ base tasty tasty-hunit tasty-quickcheck ]; + description = "Simple shell scripting from Haskell"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "shift" = callPackage ({ mkDerivation, ansi-terminal, base, binary, bytestring , composition-prelude, data-default, microlens @@ -189311,8 +191629,8 @@ self: { }: mkDerivation { pname = "shine"; - version = "0.2.0.2"; - sha256 = "0r0rl65rkcdg8c8lzli87nfad8bk4xypiqvb2qs68fhhzwx1zfg2"; + version = "0.2.0.3"; + sha256 = "16h5igycgas28qk22yg08qkfwsrar9g4bw7q8p94vmf993p4542k"; libraryHaskellDepends = [ base ghcjs-dom ghcjs-prim keycode mtl time transformers ]; @@ -189928,6 +192246,23 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "simple-affine-space" = callPackage + ({ mkDerivation, base, deepseq, directory, filepath, hlint, process + , regex-posix + }: + mkDerivation { + pname = "simple-affine-space"; + version = "0.1"; + sha256 = "02cy4vnl3fy18dsfxazh60bqgk5c1gw2x460x6i1fb5qysw7q8nh"; + libraryHaskellDepends = [ base deepseq ]; + testHaskellDepends = [ + base directory filepath hlint process regex-posix + ]; + description = "A simple library for affine and vector spaces"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "simple-atom" = callPackage ({ mkDerivation, base, containers, deepseq }: mkDerivation { @@ -189980,8 +192315,8 @@ self: { ({ mkDerivation, base, directory, filepath, process }: mkDerivation { pname = "simple-cmd"; - version = "0.1.1"; - sha256 = "0y9ga7m3zykrmgfzys6g7k1z79spp2319ln4sayw8i0abpwh63m9"; + version = "0.1.2"; + sha256 = "10jdyl1ghzczxw5bi8s1694fla42s1aknmj5grxndidwzf95b8g6"; libraryHaskellDepends = [ base directory filepath process ]; description = "Simple String-based process commands"; license = stdenv.lib.licenses.bsd3; @@ -190202,8 +192537,8 @@ self: { }: mkDerivation { pname = "simple-log"; - version = "0.9.8"; - sha256 = "1yn2nnvmzfw4v7bi6jchsd8y27vpd8m4in0shydyyglpjmaq751k"; + version = "0.9.9"; + sha256 = "0pmamadkiyryl3mdvnq1gc7yx0bm4qspvj489ac27hrlr9d1d7j7"; libraryHaskellDepends = [ async base base-unicode-symbols containers data-default deepseq directory exceptions filepath hformat microlens microlens-platform @@ -190467,8 +192802,8 @@ self: { ({ mkDerivation, base, process }: mkDerivation { pname = "simple-smt"; - version = "0.9.1"; - sha256 = "13dg61jdgby49lpdb53anrg39wn8dwgvg6jpn8vh0y8rf2zilq9b"; + version = "0.9.3"; + sha256 = "17v8zpiiha8kyb4xbrqdnfibf1dwzf9lbhxj9kffvl948ygxdp8x"; libraryHaskellDepends = [ base process ]; description = "A simple way to interact with an SMT solver process"; license = stdenv.lib.licenses.bsd3; @@ -190611,8 +192946,8 @@ self: { }: mkDerivation { pname = "simple-vec3"; - version = "0.4.0.8"; - sha256 = "0jikq60ixk21gb7j3rayxqha73m9vn4n8kz4799rcw5qiii7rr4a"; + version = "0.4.0.9"; + sha256 = "1rx4nifv75lpxrdgq6x3a61d56qp0ln9rhf2d10l2ds049dlq0pz"; libraryHaskellDepends = [ base QuickCheck vector ]; testHaskellDepends = [ base doctest doctest-driver-gen tasty tasty-quickcheck @@ -190840,10 +193175,10 @@ self: { ({ mkDerivation, base, containers }: mkDerivation { pname = "simtreelo"; - version = "0.1.1.3"; - sha256 = "148j6z8rxqaiwfjgxz780fy8w8xv8a8gwida61lfir677jlkwgh9"; + version = "0.1.1.4"; + sha256 = "0a8414006gdya8b4dw38251kim3x2i5g7m03ga479ialghralrc8"; libraryHaskellDepends = [ base containers ]; - description = "Loader for data organized in a tree"; + description = "Load data organized in a tree"; license = stdenv.lib.licenses.gpl3; }) {}; @@ -191104,8 +193439,8 @@ self: { }: mkDerivation { pname = "sitepipe"; - version = "0.3.0.1"; - sha256 = "1iv0ndllixwn9vj7gqavv1ymfxfxqm4xqqzxqf1y8qiq240b3j6l"; + version = "0.3.0.2"; + sha256 = "0f26sqpf8rjrbpk6q9hp0q705hhmhyp71jyj5w9jgq6mnj34rxy8"; libraryHaskellDepends = [ aeson base bytestring containers directory exceptions filepath Glob lens lens-aeson megaparsec MissingH mtl mustache @@ -191637,6 +193972,30 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "slack-web_0_2_0_8" = callPackage + ({ mkDerivation, aeson, base, containers, errors, hspec + , http-api-data, http-client, http-client-tls, megaparsec, mtl + , servant, servant-client, servant-client-core, text, time + , transformers + }: + mkDerivation { + pname = "slack-web"; + version = "0.2.0.8"; + sha256 = "00sm4sh8ik472l5hk1yifczppr6nxx9b68byilg0zwzy1c4mq9kg"; + libraryHaskellDepends = [ + aeson base containers errors http-api-data http-client + http-client-tls megaparsec mtl servant servant-client + servant-client-core text time transformers + ]; + testHaskellDepends = [ + aeson base containers errors hspec http-api-data megaparsec text + time + ]; + description = "Bindings for the Slack web API"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "slate" = callPackage ({ mkDerivation, base, directory, filepath, htoml , optparse-applicative, process, string-conversions @@ -191644,8 +194003,8 @@ self: { }: mkDerivation { pname = "slate"; - version = "0.11.0.0"; - sha256 = "0y6l3cjlh0hkc3nch7fwvxpv2i5r9qv6r1kdi3savi0vp0dvgdy8"; + version = "0.12.0.0"; + sha256 = "01qi6k9gcz6y8x8hlvsmm2irfvcsbdqqvzg5kgf2x02idmh9zy1a"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -191685,21 +194044,21 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; - "slave-thread_1_0_2_2" = callPackage - ({ mkDerivation, base, deferred-folds, foldl, HTF, mmorph - , partial-handler, QuickCheck, quickcheck-instances, rerebase - , SafeSemaphore, stm-containers, transformers + "slave-thread_1_0_2_7" = callPackage + ({ mkDerivation, base, deferred-folds, foldl, QuickCheck + , quickcheck-instances, rerebase, SafeSemaphore, stm-containers + , tasty, tasty-hunit, tasty-quickcheck }: mkDerivation { pname = "slave-thread"; - version = "1.0.2.2"; - sha256 = "1jf8n989gsxbqkyxj8kd523dxp5bxs9cs4s6jd4j95mvij6pgpgl"; + version = "1.0.2.7"; + sha256 = "1rh7314l12d18pywsd7fl4d96dn0s777asf2i7p99nhyzacjnbb6"; libraryHaskellDepends = [ - base deferred-folds foldl mmorph partial-handler stm-containers - transformers + base deferred-folds foldl stm-containers ]; testHaskellDepends = [ - HTF QuickCheck quickcheck-instances rerebase SafeSemaphore + QuickCheck quickcheck-instances rerebase SafeSemaphore tasty + tasty-hunit tasty-quickcheck ]; description = "A fundamental solution to ghost threads and silent exceptions"; license = stdenv.lib.licenses.mit; @@ -192550,8 +194909,8 @@ self: { pname = "snap-core"; version = "1.0.3.2"; sha256 = "136q7l4hd5yn5hb507q1ziqx124ma1lkzh5dx0n150p8dx3rhhsc"; - revision = "2"; - editedCabalFile = "0m0rjsgv0lkd0y9ragn478ibw98c9iys4mrj26x8ihasdnzgkqxq"; + revision = "3"; + editedCabalFile = "0wlhn33r7c9g7j23y006ddq9d87lkmianvvfrbl8jd8mvjvj2gfa"; libraryHaskellDepends = [ attoparsec base bytestring bytestring-builder case-insensitive containers directory filepath hashable HUnit io-streams lifted-base @@ -192628,8 +194987,8 @@ self: { }: mkDerivation { pname = "snap-extras"; - version = "0.12.2.0"; - sha256 = "18d1gfpk2gzvaidb6l13y64540hfyqk5hw6gpx7z495ay1dafdzr"; + version = "0.12.2.1"; + sha256 = "0mzvw49v6i77ysdlxfrdva5kn0vj9p5h2br6qlwvhdwqq8269gqp"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; @@ -192754,8 +195113,8 @@ self: { pname = "snap-server"; version = "1.1.0.0"; sha256 = "0vvw9n8xs272qdlrf3dxhnva41zh3awi7pf022rrjj75lj8a77i4"; - revision = "2"; - editedCabalFile = "03jmxbz9bf0yr3vzf3xa7ajbz3q9i6cn7bzqan4vy5f26c0n6xld"; + revision = "3"; + editedCabalFile = "0a9d3nqb5rvgm25nak68lp6yj9m6cwhbgdbg5l7ib5i2czcg7yjh"; configureFlags = [ "-fopenssl" ]; isLibrary = true; isExecutable = true; @@ -194065,8 +196424,8 @@ self: { }: mkDerivation { pname = "socket"; - version = "0.8.1.0"; - sha256 = "1sbxcs1fmd7x95yk7sqv3q6gg2azn77l6sngiiv692966a0bxba0"; + version = "0.8.2.0"; + sha256 = "176px9n2f8mnxi3r2sqshrpbp7i11fskch1nkjhgqzq917sz0zgb"; libraryHaskellDepends = [ base bytestring ]; testHaskellDepends = [ async base bytestring QuickCheck tasty tasty-hunit tasty-quickcheck @@ -195011,14 +197370,21 @@ self: { }) {}; "spdx" = callPackage - ({ mkDerivation, base, tasty, tasty-quickcheck, transformers }: + ({ mkDerivation, base, base-compat, Cabal, containers, QuickCheck + , tasty, tasty-quickcheck, transformers + }: mkDerivation { pname = "spdx"; - version = "0.2.2.0"; - sha256 = "1jxxivxlhzjx4idy69qhqqv37sspqhk3f3i93mydzn8cyhn87aqp"; - libraryHaskellDepends = [ base transformers ]; - testHaskellDepends = [ base tasty tasty-quickcheck ]; - description = "SPDX license expression language"; + version = "1"; + sha256 = "1vw6pqj86slgzgbrd6kmsn5xlbxln0cys9qxxa47ypfy4spxmfkd"; + libraryHaskellDepends = [ base Cabal containers transformers ]; + testHaskellDepends = [ + base base-compat Cabal tasty tasty-quickcheck + ]; + benchmarkHaskellDepends = [ + base base-compat Cabal QuickCheck tasty-quickcheck + ]; + description = "SPDX license expression language, Extras"; license = stdenv.lib.licenses.bsd3; hydraPlatforms = stdenv.lib.platforms.none; }) {}; @@ -195713,6 +198079,7 @@ self: { ]; description = "JSON API to HTML website wrapper"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "spritz" = callPackage @@ -196454,11 +198821,12 @@ self: { ({ mkDerivation, base, gdp, ghc-prim, primitive }: mkDerivation { pname = "st2"; - version = "0.1.0.0"; - sha256 = "0gly0l191cwnahdrmgi1i2rx4430b9d684kl9s5frxa3k1711agj"; + version = "0.1.0.2"; + sha256 = "0i7v9yacwgf6aj67c4r2n8zcm07jrcff9nl52sx7ylsjs65ym2qz"; libraryHaskellDepends = [ base gdp ghc-prim primitive ]; description = "shared heap regions between local mutable state threads"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "stable-heap" = callPackage @@ -197916,6 +200284,30 @@ self: { license = stdenv.lib.licenses.mit; }) {}; + "statsdi" = callPackage + ({ mkDerivation, base, bytestring, dequeue, ether, hashable, hspec + , network, random, stm, tasty, tasty-hspec, template-haskell, time + , transformers, transformers-lift, unordered-containers + }: + mkDerivation { + pname = "statsdi"; + version = "0.2.0.0"; + sha256 = "1gbaxrvn8ilrj808hplqlibawy9kdmfb5pc2yzzdghmcsjys24g1"; + revision = "1"; + editedCabalFile = "02kf7pigkvqsm720l8rn6m3gdjqrdhli5yijsjf8n11mj6k8xrk0"; + libraryHaskellDepends = [ + base bytestring dequeue ether hashable network random stm + template-haskell time transformers transformers-lift + unordered-containers + ]; + testHaskellDepends = [ + base bytestring hspec network stm tasty tasty-hspec time + ]; + description = "A lovely [Dog]StatsD implementation"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "status-notifier-item" = callPackage ({ mkDerivation, base, bytestring, containers, dbus, dbus-hslogger , filepath, hslogger, lens, network, optparse-applicative, spool @@ -198125,6 +200517,8 @@ self: { pname = "stemmer-german"; version = "0.1.1.1"; sha256 = "037dw03zb4xdfbzp8js04ymrxii7rsin7pwiansa9khb29w2jqsn"; + revision = "1"; + editedCabalFile = "0pvghdxgd56yjm33lrzk6343lklnfdw77g30vhbfddwwdx1ifx2v"; libraryHaskellDepends = [ base text ]; description = "Extract the stem of a German inflected word form"; license = stdenv.lib.licenses.mit; @@ -198686,6 +201080,18 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "storable-complex_0_2_3_0" = callPackage + ({ mkDerivation, base, base-orphans }: + mkDerivation { + pname = "storable-complex"; + version = "0.2.3.0"; + sha256 = "0fnwbfmd5vsaaqvf9182qdcjrzcfjd1zhdyvjwzifbwvn6r9kx4s"; + libraryHaskellDepends = [ base base-orphans ]; + description = "Storable instance for Complex"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "storable-endian" = callPackage ({ mkDerivation, base, byteorder }: mkDerivation { @@ -198790,57 +201196,6 @@ self: { }) {}; "store" = callPackage - ({ mkDerivation, array, async, base, base-orphans - , base64-bytestring, bifunctors, bytestring, cereal, cereal-vector - , containers, contravariant, criterion, cryptohash, deepseq - , directory, filepath, free, ghc-prim, hashable, hspec - , hspec-smallcheck, integer-gmp, lifted-base, monad-control - , mono-traversable, network, primitive, resourcet, safe, semigroups - , smallcheck, store-core, syb, template-haskell, text, th-lift - , th-lift-instances, th-orphans, th-reify-many, th-utilities, time - , transformers, unordered-containers, vector - , vector-binary-instances, void, weigh - }: - mkDerivation { - pname = "store"; - version = "0.5.0"; - sha256 = "1ivr2pvfja2plhp625wjv9lbd47vmydp33f31ljwdyzqik2j7vij"; - libraryHaskellDepends = [ - array async base base-orphans base64-bytestring bifunctors - bytestring containers contravariant cryptohash deepseq directory - filepath free ghc-prim hashable hspec hspec-smallcheck integer-gmp - lifted-base monad-control mono-traversable network primitive - resourcet safe semigroups smallcheck store-core syb - template-haskell text th-lift th-lift-instances th-orphans - th-reify-many th-utilities time transformers unordered-containers - vector void - ]; - testHaskellDepends = [ - array async base base-orphans base64-bytestring bifunctors - bytestring cereal cereal-vector containers contravariant criterion - cryptohash deepseq directory filepath free ghc-prim hashable hspec - hspec-smallcheck integer-gmp lifted-base monad-control - mono-traversable network primitive resourcet safe semigroups - smallcheck store-core syb template-haskell text th-lift - th-lift-instances th-orphans th-reify-many th-utilities time - transformers unordered-containers vector vector-binary-instances - void weigh - ]; - benchmarkHaskellDepends = [ - array async base base-orphans base64-bytestring bifunctors - bytestring containers contravariant criterion cryptohash deepseq - directory filepath free ghc-prim hashable hspec hspec-smallcheck - integer-gmp lifted-base monad-control mono-traversable network - primitive resourcet safe semigroups smallcheck store-core syb - template-haskell text th-lift th-lift-instances th-orphans - th-reify-many th-utilities time transformers unordered-containers - vector void - ]; - description = "Fast binary serialization"; - license = stdenv.lib.licenses.mit; - }) {}; - - "store_0_5_0_1" = callPackage ({ mkDerivation, array, async, base, base-orphans , base64-bytestring, bifunctors, bytestring, cereal, cereal-vector , clock, containers, contravariant, criterion, cryptohash, deepseq @@ -198889,7 +201244,6 @@ self: { ]; description = "Fast binary serialization"; license = stdenv.lib.licenses.mit; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "store-core" = callPackage @@ -198970,15 +201324,15 @@ self: { license = stdenv.lib.licenses.mit; }) {}; - "stratosphere_0_26_1" = callPackage + "stratosphere_0_26_2" = callPackage ({ mkDerivation, aeson, aeson-pretty, base, bytestring, containers , hashable, hspec, hspec-discover, lens, template-haskell, text , unordered-containers }: mkDerivation { pname = "stratosphere"; - version = "0.26.1"; - sha256 = "0npmnj71gaf61gcxi772h4sgsz68j5jk7v5z3bjc120z7vc1a22v"; + version = "0.26.2"; + sha256 = "0f4vqll4bfwrf6hysdnh1gkjl79qcs1pwn3p6224xlqzmajb9hc5"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -199429,8 +201783,8 @@ self: { }: mkDerivation { pname = "streaming-fft"; - version = "0.1.0.0"; - sha256 = "1qphhbap1va897ghcr8v4d3nnpcb4w0b422d24isz8rg138m99wi"; + version = "0.1.0.1"; + sha256 = "1bs0wqcns0nn62rw04a1574qakqhflxhsybchf9pzig0gyrj4538"; libraryHaskellDepends = [ base contiguous-fft ghc-prim prim-instances primitive streaming ]; @@ -199666,7 +202020,7 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; - "streamly_0_5_1" = callPackage + "streamly_0_5_2" = callPackage ({ mkDerivation, atomic-primops, base, clock, containers, deepseq , exceptions, gauge, ghc-prim, heaps, hspec, lockfree-queue , monad-control, mtl, QuickCheck, random, transformers @@ -199674,8 +202028,8 @@ self: { }: mkDerivation { pname = "streamly"; - version = "0.5.1"; - sha256 = "04hc87jwcfpbwydm75ic3rz87m76s39aysi14m514nib87xprbji"; + version = "0.5.2"; + sha256 = "1pla9356yhf6zv2yz4mh8g1dslzdkkych4jrjyi4rw66frvw0jg6"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -199888,6 +202242,17 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "strict-tuple" = callPackage + ({ mkDerivation, base }: + mkDerivation { + pname = "strict-tuple"; + version = "0.1.1"; + sha256 = "13r72i95d0aal7i6v1mrviin2i5c6j9zs0f3qvc66wyy7mkr1h5n"; + libraryHaskellDepends = [ base ]; + description = "Strict tuples"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "strict-types" = callPackage ({ mkDerivation, array, base, bytestring, containers, deepseq , hashable, text, unordered-containers, vector @@ -200385,6 +202750,30 @@ self: { license = stdenv.lib.licenses.mit; }) {}; + "strive_5_0_7" = callPackage + ({ mkDerivation, aeson, base, bytestring, data-default, gpolyline + , http-client, http-client-tls, http-types, markdown-unlit + , template-haskell, text, time, transformers + }: + mkDerivation { + pname = "strive"; + version = "5.0.7"; + sha256 = "0hxy5znrfcls6bd8hjil97mya3w8zkppfd4jrz0ayz7zidbws5kg"; + libraryHaskellDepends = [ + aeson base bytestring data-default gpolyline http-client + http-client-tls http-types template-haskell text time transformers + ]; + testHaskellDepends = [ + aeson base bytestring data-default gpolyline http-client + http-client-tls http-types markdown-unlit template-haskell text + time transformers + ]; + testToolDepends = [ markdown-unlit ]; + description = "A client for the Strava V3 API"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "strptime" = callPackage ({ mkDerivation, base, bytestring, text, time }: mkDerivation { @@ -200458,8 +202847,8 @@ self: { }: mkDerivation { pname = "structured-cli"; - version = "2.0.0.1"; - sha256 = "1xgf49pd1dm80qp1h14f2nyqv71axrijrd8k66jmmqkczf24jah2"; + version = "2.4.0.1"; + sha256 = "1978icz9iiq213l240r3m5dmizdl3493xrqlzdz16b0vpfkxmq0k"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -201152,28 +203541,27 @@ self: { "super-user-spark" = callPackage ({ mkDerivation, aeson, aeson-pretty, base, bytestring, directory , filepath, genvalidity, genvalidity-hspec, genvalidity-hspec-aeson - , genvalidity-path, hashable, hspec, hspec-core, HUnit, iostring - , mtl, optparse-applicative, parsec, path, path-io, process - , QuickCheck, text, transformers, unix, validity, validity-path + , genvalidity-path, hashable, hspec, hspec-core, mtl + , optparse-applicative, parsec, path, path-io, process, QuickCheck + , text, transformers, unix, validity, validity-path }: mkDerivation { pname = "super-user-spark"; - version = "0.4.0.0"; - sha256 = "1yk0kkp9rj63m7vqvki7zs3l8r5da8as7hpw1l6qk2gf74lpkfdy"; + version = "0.4.0.1"; + sha256 = "0pxkvc1vjarh4p5rqnai6nlsqxv9as8jvqs2vpywl1525nsfyvy5"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ - aeson aeson-pretty base bytestring directory filepath hashable - iostring mtl optparse-applicative parsec path path-io process text - unix validity validity-path + aeson aeson-pretty base bytestring directory filepath hashable mtl + optparse-applicative parsec path path-io process text unix validity + validity-path ]; executableHaskellDepends = [ base ]; testHaskellDepends = [ aeson aeson-pretty base bytestring directory filepath genvalidity genvalidity-hspec genvalidity-hspec-aeson genvalidity-path hashable - hspec hspec-core HUnit iostring mtl optparse-applicative parsec - path path-io process QuickCheck text transformers unix validity - validity-path + hspec hspec-core mtl optparse-applicative parsec path path-io + process QuickCheck text transformers unix validity validity-path ]; description = "Configure your dotfile deployment with a DSL"; license = stdenv.lib.licenses.mit; @@ -201385,6 +203773,20 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "supervisors" = callPackage + ({ mkDerivation, async, base, containers, hspec, stm, unliftio }: + mkDerivation { + pname = "supervisors"; + version = "0.1.0.0"; + sha256 = "1sxralp0hcz2zn5byn67xq612nzmpm890gnjs827sidvr7r7h31j"; + revision = "1"; + editedCabalFile = "186a5vawnknixf4psp06cjbyby5qp4i0c8bpvisqi3pq3kag7x76"; + libraryHaskellDepends = [ async base containers stm unliftio ]; + testHaskellDepends = [ base hspec ]; + description = "Monitor groups of threads with non-hierarchical lifetimes"; + license = stdenv.lib.licenses.mit; + }) {}; + "supplemented" = callPackage ({ mkDerivation, base, base-prelude, QuickCheck , quickcheck-instances, rebase, tasty, tasty-hunit @@ -201825,8 +204227,8 @@ self: { pname = "swagger2"; version = "2.3.0.1"; sha256 = "1l8piv2phl8kq3rgna8wld80b569vazqk2ll1rgs5iakm42lxr1f"; - revision = "1"; - editedCabalFile = "12w7bsld9wp2nm61vwdwb6ndjd3g99i0g4hjr32mrycmf41yvs1a"; + revision = "2"; + editedCabalFile = "0dfxf47mzzb5rmln2smsk0qx53kj1lc3a087r52g2rzz6971zivb"; setupHaskellDepends = [ base Cabal cabal-doctest ]; libraryHaskellDepends = [ aeson base base-compat-batteries bytestring containers generics-sop @@ -201937,15 +204339,15 @@ self: { license = stdenv.lib.licenses.lgpl21; }) {}; - "swish_0_10_0_0" = callPackage + "swish_0_10_0_1" = callPackage ({ mkDerivation, base, containers, directory, filepath, hashable , HUnit, intern, mtl, network-uri, old-locale, polyparse , semigroups, test-framework, test-framework-hunit, text, time }: mkDerivation { pname = "swish"; - version = "0.10.0.0"; - sha256 = "1dm388lwfxrpdbqm3fdk9gjr8pp8y8s02wl9aan86av956g2kr4h"; + version = "0.10.0.1"; + sha256 = "1ikqqyra9r79vw2s969kyqh1vgijcr33y7irriylsp51n7pspagk"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; @@ -201970,8 +204372,8 @@ self: { }: mkDerivation { pname = "sws"; - version = "0.4.2.0"; - sha256 = "0bwfpw348g167a195f8g4cp3h553hkanm6s67bairhn8qprh8az4"; + version = "0.4.3.0"; + sha256 = "0zwh7az9pgsgvx9wbjnz8lzy2v8lrkkwv3h72jfy5sj50xylrzbr"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ @@ -202214,8 +204616,8 @@ self: { pname = "symbol"; version = "0.2.4"; sha256 = "0cc8kdm68pirb0s7n46v0yvw5b718qf7qip40jkg5q3c3xsafx6h"; - revision = "1"; - editedCabalFile = "01ab7600ja88wfvg9x8zmxksw44j9klmm71y9zmig7qxs1qslb25"; + revision = "2"; + editedCabalFile = "0jdbaap11pkgb6m98v57k7qnx62pqxy7pa2i7293ywa4q305qgm1"; libraryHaskellDepends = [ base containers deepseq ]; description = "A 'Symbol' type for fast symbol comparison"; license = stdenv.lib.licenses.bsd3; @@ -203923,21 +206325,22 @@ self: { "tailfile-hinotify" = callPackage ({ mkDerivation, async, base, bytestring, conceit, directory - , filepath, foldl, hinotify, pipes, process-streaming, streaming - , streaming-eversion, tasty, tasty-hunit + , filepath, foldl, hinotify, pipes, pipes-transduce + , process-streaming, streaming, streaming-eversion, tasty + , tasty-hunit, text }: mkDerivation { pname = "tailfile-hinotify"; - version = "1.0.0.3"; - sha256 = "0czw1ahm4zcxhyhzg6by3rfbirkhv9jlcw9yzp7q1zrxb3schbyz"; + version = "2.0.0.0"; + sha256 = "0qnpikj8fbjnks95wwza8m773j0b9sg7fn16dvpfps189icm85gi"; libraryHaskellDepends = [ async base bytestring foldl hinotify pipes streaming - streaming-eversion + streaming-eversion text ]; testHaskellDepends = [ async base bytestring conceit directory filepath foldl hinotify - pipes process-streaming streaming streaming-eversion tasty - tasty-hunit + pipes pipes-transduce process-streaming streaming + streaming-eversion tasty tasty-hunit text ]; description = "Tail files in Unix, using hinotify"; license = stdenv.lib.licenses.mit; @@ -204578,6 +206981,8 @@ self: { pname = "tasty-hedgehog-coverage"; version = "0.1.0.0"; sha256 = "1d2hnhkpk71k0xjw63jsn6fa4ih01xqn4dgdbflp6yrs0zw6p95c"; + revision = "1"; + editedCabalFile = "1p3d9w24q39fnljv9m5a8anpv3j3cvazbca4d3hqrjx5w06ik42f"; libraryHaskellDepends = [ base containers hedgehog mtl tagged tasty tasty-hedgehog text transformers wl-pprint-annotated @@ -205133,6 +207538,8 @@ self: { pname = "tdigest"; version = "0.2.1"; sha256 = "0kmqmzjcs406hv2fv9bkfayxpsd41dbry8bpkhy4y1jdgh33hvnl"; + revision = "1"; + editedCabalFile = "1jrq22j9jbvx31pspwjvyb539gix7vfb8cinqkkb2abmr0jrhibn"; setupHaskellDepends = [ base Cabal cabal-doctest ]; libraryHaskellDepends = [ base base-compat binary deepseq reducers semigroupoids transformers @@ -206011,8 +208418,8 @@ self: { }: mkDerivation { pname = "term-rewriting"; - version = "0.3"; - sha256 = "03y5s9c9n1mnij3yh5z4c69isg5cbpwczj5sjjvajqaaqf6xy5f3"; + version = "0.3.0.1"; + sha256 = "0fa2yqdhw93r7byx47z050sq2yc0arfsvwnzl4jp1vyhdzarfwqd"; libraryHaskellDepends = [ ansi-wl-pprint array base containers mtl multiset parsec union-find-array @@ -206889,10 +209296,8 @@ self: { }: mkDerivation { pname = "texmath"; - version = "0.11.1.1"; - sha256 = "1syvyiw84as79c76mssw1p4d3lrnghnwdyy4ip1w48qd07fadxf6"; - revision = "1"; - editedCabalFile = "0740lpg42r0wdj9hm9gvnzrjka9mqpkzazx2s3qnliiigy39zk96"; + version = "0.11.1.2"; + sha256 = "1wac48qlcwrfm5j1yng27929iqnj2x0zkj7ffrwkj3rchf0i4grp"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -207609,6 +210014,8 @@ self: { pname = "text-show"; version = "3.7.5"; sha256 = "1by89i3c6qyjh7jjld06wb2sphb236rbvwb1mmvq8f6mxliiyf1r"; + revision = "1"; + editedCabalFile = "1v8czpi9mn54850k0pilqh1f3yfr5n5vykmg5k57wmrdpx25vkws"; libraryHaskellDepends = [ array base base-compat-batteries bifunctors bytestring bytestring-builder containers contravariant generic-deriving @@ -211110,6 +213517,8 @@ self: { pname = "toml-parser"; version = "0.1.0.0"; sha256 = "0p1nl3009qlcqn4jjggbm1v719a6bswklkyjb3plm0cz3bsyr0fs"; + revision = "1"; + editedCabalFile = "0w5vpr6gh0671znv3k90gy9fzjvxzn3g7bir2c6z27ks6y39w0qf"; libraryHaskellDepends = [ array base text time ]; libraryToolDepends = [ alex happy ]; description = "Parser for the TOML configuration language"; @@ -211145,30 +213554,32 @@ self: { license = stdenv.lib.licenses.mpl20; }) {}; - "tomland_0_4_0" = callPackage - ({ mkDerivation, base, hashable, hedgehog, hspec-megaparsec - , megaparsec, mtl, parser-combinators, tasty, tasty-discover - , tasty-hedgehog, tasty-hspec, text, time, transformers - , unordered-containers + "tomland_0_5_0" = callPackage + ({ mkDerivation, aeson, base, bytestring, containers, deepseq + , gauge, hashable, hedgehog, hspec-megaparsec, htoml + , htoml-megaparsec, megaparsec, mtl, parsec, parser-combinators + , tasty, tasty-discover, tasty-hedgehog, tasty-hspec, tasty-silver + , text, time, transformers, unordered-containers }: mkDerivation { pname = "tomland"; - version = "0.4.0"; - sha256 = "1rkdlq6js5ia807wh9hga6y9r92bxj8j5g7nynba1ilc3x70znfr"; - revision = "1"; - editedCabalFile = "1d02r17m15s5z4xqyy05s515lbsqxc3kcipk25xvn24inz42qg4r"; + version = "0.5.0"; + sha256 = "001gw3yj0ibg3dm4q5wz8akjpcdx6zj3jza1y6gq7m5h13fzrvgf"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ - base hashable megaparsec mtl parser-combinators text time - transformers unordered-containers + base bytestring containers deepseq hashable megaparsec mtl + parser-combinators text time transformers unordered-containers ]; executableHaskellDepends = [ base text time unordered-containers ]; testHaskellDepends = [ base hedgehog hspec-megaparsec megaparsec tasty tasty-hedgehog - tasty-hspec text time unordered-containers + tasty-hspec tasty-silver text time unordered-containers ]; testToolDepends = [ tasty-discover ]; + benchmarkHaskellDepends = [ + aeson base deepseq gauge htoml htoml-megaparsec parsec text time + ]; description = "Bidirectional TOML parser"; license = stdenv.lib.licenses.mpl20; hydraPlatforms = stdenv.lib.platforms.none; @@ -211193,24 +213604,21 @@ self: { }) {}; "toodles" = callPackage - ({ mkDerivation, aeson, base, blaze-html, bytestring, cmdargs - , directory, filepath, http-types, megaparsec, MissingH - , regex-posix, servant, servant-blaze, servant-server, strict, text - , transformers, wai, warp, yaml + ({ mkDerivation, aeson, base, blaze-html, cmdargs, directory + , megaparsec, MissingH, regex-posix, servant, servant-blaze + , servant-server, strict, text, wai, warp, yaml }: mkDerivation { pname = "toodles"; - version = "0.1.0.9"; - sha256 = "01gjxd4pclilm19iw7nkr23pmyavd7d9k0wa1c63hwhdzm1591f7"; - revision = "3"; - editedCabalFile = "08zadf5r79dpw9g0hg6lsnyvcnpprzb9d0lfs67kpyigm5ih9w8w"; + version = "0.1.3"; + sha256 = "09ph9jmhma211r16fyvib8fwv3jm8v526swjgwrzsl9c97xfpzjg"; isLibrary = false; isExecutable = true; enableSeparateDataOutput = true; executableHaskellDepends = [ - aeson base blaze-html bytestring cmdargs directory filepath - http-types megaparsec MissingH regex-posix servant servant-blaze - servant-server strict text transformers wai warp yaml + aeson base blaze-html cmdargs directory megaparsec MissingH + regex-posix servant servant-blaze servant-server strict text wai + warp yaml ]; description = "Manage the TODO entries in your code"; license = stdenv.lib.licenses.mit; @@ -211743,8 +214151,10 @@ self: { }: mkDerivation { pname = "traildb"; - version = "0.1.4.0"; - sha256 = "1qp3m8vfjy9kim9jikhxplyp6c21scj18n9qnb0pfd0hpjyigd9b"; + version = "0.1.4.1"; + sha256 = "1h3pscbxjl3cpcxbch4ydiv6y5j54k99v8kq61jv01gv1vjisd2r"; + isLibrary = true; + isExecutable = true; libraryHaskellDepends = [ base bytestring containers directory exceptions primitive profunctors text time transformers unix vector @@ -212064,8 +214474,8 @@ self: { pname = "transformers-lift"; version = "0.2.0.1"; sha256 = "17g03r5hpnygx0c9ybr9za6208ay0cjvz47rkyplv1r9zcivzn0b"; - revision = "1"; - editedCabalFile = "1dy9vg0drkm9ria80hlfx6v72ji2fwmv3ik7lryv7i7hk0bdzk8l"; + revision = "2"; + editedCabalFile = "16gpca2wfa7w2b5kzfvqsjjyd61pkv0wyi2mk5b34367p4chnsc5"; libraryHaskellDepends = [ base transformers writer-cps-transformers ]; @@ -212413,8 +214823,8 @@ self: { pname = "tree-diff"; version = "0.0.1"; sha256 = "049v44c520jy3icxlnrvbdblh3mjmvd7m6qmkzxbzkf02x63xqmz"; - revision = "5"; - editedCabalFile = "1rj2n9d6mmk6zijnlc0q72s2qs8hhwhf25gpqqswaiqhbbh7gxi2"; + revision = "6"; + editedCabalFile = "1wyhygrpqphxzzwlrk6nl4h5xbyx6zi0y34i1nxvsy726fl5idai"; libraryHaskellDepends = [ aeson ansi-terminal ansi-wl-pprint base base-compat bytestring containers generics-sop hashable MemoTrie parsec parsers pretty @@ -212753,6 +215163,26 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "triplesec_0_2_2_0" = callPackage + ({ mkDerivation, base, bytestring, cryptonite, doctest, memory, mtl + , QuickCheck, tasty, tasty-hunit, tasty-quickcheck, transformers + }: + mkDerivation { + pname = "triplesec"; + version = "0.2.2.0"; + sha256 = "1gxks45hjr3a1lnr2v75cl0iwsmlzaq3yzd3p9s0pn5227f34zh7"; + libraryHaskellDepends = [ + base cryptonite memory mtl transformers + ]; + testHaskellDepends = [ + base bytestring doctest memory QuickCheck tasty tasty-hunit + tasty-quickcheck + ]; + description = "TripleSec is a simple, triple-paranoid, symmetric encryption library"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "trivia" = callPackage ({ mkDerivation, base, comonad, distributive }: mkDerivation { @@ -214145,8 +216575,8 @@ self: { ({ mkDerivation, base, containers, template-haskell }: mkDerivation { pname = "tyfam-witnesses"; - version = "0.1.1.1"; - sha256 = "1rnmnj2dlzbzj12fddv73mg0p0qgvn5blknb7d9ayns6pxc57aap"; + version = "0.1.1.2"; + sha256 = "0gsx2syy58gq7n2yi4whslbnwg4dh34x8jy56h11k8z6n01inppc"; libraryHaskellDepends = [ base containers template-haskell ]; description = "Provide proof witnesses for closed type family evaluation"; license = stdenv.lib.licenses.mit; @@ -214563,8 +216993,8 @@ self: { }: mkDerivation { pname = "type-map"; - version = "0.1.2.0"; - sha256 = "0cm2b4xkassjh71ndc5nddpmqyr5bcf3fqxs74wzd11dycmfqfaa"; + version = "0.1.3.0"; + sha256 = "146kc36z6fljcgmgl9vii1pmf3hs80v2vz21r84p823znrqjs8gc"; libraryHaskellDepends = [ base containers ghc-prim vector ]; testHaskellDepends = [ base HUnit test-framework test-framework-hunit @@ -214612,6 +217042,28 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "type-of-html_1_4_1_0" = callPackage + ({ mkDerivation, base, blaze-html, bytestring, criterion, deepseq + , double-conversion, ghc, ghc-paths, ghc-prim, hspec, QuickCheck + , random, temporary, text, weigh + }: + mkDerivation { + pname = "type-of-html"; + version = "1.4.1.0"; + sha256 = "05c9rsbfivw7dsjmci7rnv08i4xmyg59kqghqi0f3dr5hrvas8dv"; + libraryHaskellDepends = [ + base bytestring double-conversion ghc-prim text + ]; + testHaskellDepends = [ base hspec QuickCheck ]; + benchmarkHaskellDepends = [ + base blaze-html bytestring criterion deepseq ghc ghc-paths random + temporary text weigh + ]; + description = "High performance type driven html generation"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "type-of-html-static" = callPackage ({ mkDerivation, base, template-haskell, type-of-html }: mkDerivation { @@ -215024,8 +217476,8 @@ self: { ({ mkDerivation, base, hspec, QuickCheck }: mkDerivation { pname = "typenums"; - version = "0.1.2"; - sha256 = "1729iws0m6xr8y5aqcrxv4br1ihvly6fagkkgfp9kj71a5jzaw7l"; + version = "0.1.2.1"; + sha256 = "06wrsvbddv2ga7k39954697jnclb5r6g4m95pr0fmv34ws1y1d66"; libraryHaskellDepends = [ base ]; testHaskellDepends = [ base hspec QuickCheck ]; description = "Type level numbers using existing Nat functionality"; @@ -216799,7 +219251,7 @@ self: { license = stdenv.lib.licenses.mit; }) {}; - "universum_1_4_0" = callPackage + "universum_1_5_0" = callPackage ({ mkDerivation, base, bytestring, containers, deepseq, doctest , gauge, ghc-prim, Glob, hashable, hedgehog, microlens , microlens-mtl, mtl, safe-exceptions, stm, tasty, tasty-hedgehog @@ -216807,8 +219259,8 @@ self: { }: mkDerivation { pname = "universum"; - version = "1.4.0"; - sha256 = "1qhpz4wlvhrdjb1pvs0lgm0pghrciqasb3378zw32lqh3pv2pnrk"; + version = "1.5.0"; + sha256 = "17rzi17k2wj3p6dzd0dggzgyhh0c2mma4znkci1hqcihwr6rrljk"; libraryHaskellDepends = [ base bytestring containers deepseq ghc-prim hashable microlens microlens-mtl mtl safe-exceptions stm text transformers @@ -217661,8 +220113,8 @@ self: { ({ mkDerivation, aeson, base, bytestring, text, uri-bytestring }: mkDerivation { pname = "uri-bytestring-aeson"; - version = "0.1.0.6"; - sha256 = "02pgzkgmcam06qy1lqbmmjbah95b08hl5d5q61smmx78f83mzgfq"; + version = "0.1.0.7"; + sha256 = "16zg0fsxzdii72119jyhn2g2gy7j6pk7r8i7w5hk9a353kmvb43y"; libraryHaskellDepends = [ aeson base bytestring text uri-bytestring ]; @@ -217922,7 +220374,7 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; - "urlpath_9_0_0_1" = callPackage + "urlpath_9_0_1" = callPackage ({ mkDerivation, attoparsec-uri, base, exceptions, mmorph , monad-control, monad-control-aligned, monad-logger, mtl, path , path-extra, resourcet, split, strict, text, transformers @@ -217930,8 +220382,8 @@ self: { }: mkDerivation { pname = "urlpath"; - version = "9.0.0.1"; - sha256 = "009836gw2gmmjb08nqqdklpr967gfnnnk1r5lpy3wjyspky03vgv"; + version = "9.0.1"; + sha256 = "0acflpvb0imf2qc2gqbqziv4lk6a5p9gxkvbm0mv3kszqslh7rrg"; libraryHaskellDepends = [ attoparsec-uri base exceptions mmorph monad-control monad-control-aligned monad-logger mtl path path-extra resourcet @@ -219007,12 +221459,12 @@ self: { license = stdenv.lib.licenses.mit; }) {}; - "validity_0_8_0_0" = callPackage + "validity_0_9_0_0" = callPackage ({ mkDerivation, base, hspec }: mkDerivation { pname = "validity"; - version = "0.8.0.0"; - sha256 = "0yr342gd8ylji7nqa8w3ssik8qcgb4v3h3j30qf5nbzg900k5rsn"; + version = "0.9.0.0"; + sha256 = "1rm0gw049v7f9i5rqn8f8ps4ksawmmggmhw9yclgh4qhhql7gz3q"; libraryHaskellDepends = [ base ]; testHaskellDepends = [ base hspec ]; description = "Validity typeclass"; @@ -219723,17 +222175,17 @@ self: { }) {}; "vector-binary-instances" = callPackage - ({ mkDerivation, base, binary, bytestring, criterion, deepseq - , tasty, tasty-quickcheck, vector + ({ mkDerivation, base, binary, bytestring, deepseq, gauge, tasty + , tasty-quickcheck, vector }: mkDerivation { pname = "vector-binary-instances"; - version = "0.2.5"; - sha256 = "0l9zj58a4sbpic1dc9if7iwv4rihya2bj4zb4qfna5fb3pf6plwc"; + version = "0.2.5.1"; + sha256 = "04n5cqm1v95pw1bp68l9drjkxqiy2vswxdq0fy1rqcgxisgvji9r"; libraryHaskellDepends = [ base binary vector ]; testHaskellDepends = [ base binary tasty tasty-quickcheck vector ]; benchmarkHaskellDepends = [ - base binary bytestring criterion deepseq vector + base binary bytestring deepseq gauge vector ]; description = "Instances of Data.Binary for vector"; license = stdenv.lib.licenses.bsd3; @@ -219992,6 +222444,23 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "vector-sized_1_1_0_0" = callPackage + ({ mkDerivation, adjunctions, base, comonad, deepseq, distributive + , finite-typelits, indexed-list-literals, primitive, vector + }: + mkDerivation { + pname = "vector-sized"; + version = "1.1.0.0"; + sha256 = "0y11ggayk4l61i50m0gxv6qm7z1pscmagj5nyrz3q47j31pv5vkl"; + libraryHaskellDepends = [ + adjunctions base comonad deepseq distributive finite-typelits + indexed-list-literals primitive vector + ]; + description = "Size tagged vectors"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "vector-space" = callPackage ({ mkDerivation, base, Boolean, MemoTrie, NumInstances }: mkDerivation { @@ -220275,8 +222744,8 @@ self: { ({ mkDerivation, aeson, base, bytestring, hspec, semigroupoids }: mkDerivation { pname = "versioning"; - version = "0.3.0.0"; - sha256 = "12d5xxc8i0ldbsb6y22f9gvk0d61nrgjz3yf7ppvqrzhilgs6yyf"; + version = "0.3.0.1"; + sha256 = "08072xwz094qdawczggxx8gk734cas8767zcah84q30qdb5ywzwf"; libraryHaskellDepends = [ aeson base bytestring semigroupoids ]; testHaskellDepends = [ aeson base bytestring hspec ]; description = "Type-safe data versioning"; @@ -220290,8 +222759,8 @@ self: { }: mkDerivation { pname = "versioning-servant"; - version = "0.1.0.0"; - sha256 = "14a1fk2mgcjjlb1z01xb5ngf496kpfr2y588265zn72q54a7l08k"; + version = "0.1.0.1"; + sha256 = "0hk30p8wjn00dzxyd45hf7r1qhn944j12km00birgqhf4vcmw7c4"; libraryHaskellDepends = [ aeson attoparsec base bytestring http-media servant versioning ]; @@ -220884,6 +223353,26 @@ self: { license = "GPL"; }) {}; + "vivid_0_4_2_3" = callPackage + ({ mkDerivation, base, binary, bytestring, containers, directory + , filepath, hashable, MonadRandom, mtl, network, process, random + , random-shuffle, split, stm, time, transformers, utf8-string + , vivid-osc, vivid-supercollider + }: + mkDerivation { + pname = "vivid"; + version = "0.4.2.3"; + sha256 = "0awm9cnjgfqx1qf6jsnwmf0kxqxwny82q1ddqna8ilqcdrbsxh0i"; + libraryHaskellDepends = [ + base binary bytestring containers directory filepath hashable + MonadRandom mtl network process random random-shuffle split stm + time transformers utf8-string vivid-osc vivid-supercollider + ]; + description = "Sound synthesis with SuperCollider"; + license = "GPL"; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "vivid-osc" = callPackage ({ mkDerivation, base, binary, bytestring, cereal, microspec, time }: @@ -220897,14 +223386,13 @@ self: { license = "GPL"; }) {}; - "vivid-osc_0_4_0_0" = callPackage - ({ mkDerivation, base, binary, bytestring, cereal, microspec, time - }: + "vivid-osc_0_5_0_0" = callPackage + ({ mkDerivation, base, bytestring, cereal, microspec, time }: mkDerivation { pname = "vivid-osc"; - version = "0.4.0.0"; - sha256 = "10wbl11xwkahjsnvy14ysvkbylh615x7i8v4hwrji81rfy2bs29n"; - libraryHaskellDepends = [ base binary bytestring cereal time ]; + version = "0.5.0.0"; + sha256 = "041m4k1aqkw35fp7l03i3ba1jyppr8lia2v2zyq7v8yzby8ngys6"; + libraryHaskellDepends = [ base bytestring cereal time ]; testHaskellDepends = [ base bytestring cereal microspec time ]; description = "Open Sound Control encode/decode"; license = "GPL"; @@ -220930,6 +223418,26 @@ self: { license = "GPL"; }) {}; + "vivid-supercollider_0_4_1_1" = callPackage + ({ mkDerivation, base, binary, bytestring, cereal, microspec + , QuickCheck, split, utf8-string, vivid-osc + }: + mkDerivation { + pname = "vivid-supercollider"; + version = "0.4.1.1"; + sha256 = "1qf4hnslcmqkahxs5d55iljiybn46is41a5kikjd2vnbns4va0fb"; + libraryHaskellDepends = [ + base binary bytestring cereal split utf8-string vivid-osc + ]; + testHaskellDepends = [ + base binary bytestring cereal microspec QuickCheck utf8-string + vivid-osc + ]; + description = "Implementation of SuperCollider server specifications"; + license = "GPL"; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "vk-aws-route53" = callPackage ({ mkDerivation, aws, base, bytestring, containers, http-conduit , http-types, old-locale, resourcet, text, time, xml-conduit @@ -220977,25 +223485,27 @@ self: { "voicebase" = callPackage ({ mkDerivation, aeson, base, bytestring, filepath, HsOpenSSL - , http-client, http-client-openssl, json-autotype, lens, mime-types - , optparse-applicative, text, wreq + , hspec, http-client, http-client-openssl, lens, lens-aeson + , mime-types, mtl, optparse-applicative, roundtrip, roundtrip-aeson + , text, wreq }: mkDerivation { pname = "voicebase"; - version = "0.1.1.4"; - sha256 = "17yrdrvvd3kyd6qnkfhqdwjxc5ripmzwa056rvn38ny3cxcfkd78"; + version = "0.2.0.0"; + sha256 = "0ih0z27vz7767gr11lz227vb84i2kwc6wn9z1yd0zma5nj8x73hw"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ aeson base bytestring HsOpenSSL http-client http-client-openssl - json-autotype lens mime-types text wreq + lens lens-aeson mime-types mtl roundtrip roundtrip-aeson text wreq ]; executableHaskellDepends = [ aeson base bytestring filepath mime-types optparse-applicative text ]; - testHaskellDepends = [ aeson base ]; + testHaskellDepends = [ aeson base hspec roundtrip-aeson ]; description = "Upload audio files to voicebase to get a transcription"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "void" = callPackage @@ -221152,7 +223662,7 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; - "vty_5_25" = callPackage + "vty_5_25_1" = callPackage ({ mkDerivation, base, blaze-builder, bytestring, Cabal, containers , deepseq, directory, filepath, hashable, HUnit, microlens , microlens-mtl, microlens-th, mtl, parallel, parsec, QuickCheck @@ -221163,8 +223673,8 @@ self: { }: mkDerivation { pname = "vty"; - version = "5.25"; - sha256 = "1m37q8l4ynnhyln1hkwxrmgysslb5d6nvnvx667q4q004dhrcr91"; + version = "5.25.1"; + sha256 = "1x15jlf9x6c8nhdbp6alr17vigclkaf5qy5jpp14g5n568p7karw"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -221279,6 +223789,41 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "waargonaut" = callPackage + ({ mkDerivation, attoparsec, base, bifunctors, bytestring, Cabal + , cabal-doctest, containers, contravariant, digit, directory + , distributive, doctest, errors, filepath, generics-sop, hedgehog + , hedgehog-fn, hoist-error, hw-balancedparens, hw-bits, hw-json + , hw-prim, hw-rankselect, lens, mmorph, mtl, nats, parsers + , scientific, semigroupoids, semigroups, tagged, tasty + , tasty-expected-failure, tasty-hedgehog, tasty-hunit + , template-haskell, text, transformers, vector, witherable + , wl-pprint-annotated, zippers + }: + mkDerivation { + pname = "waargonaut"; + version = "0.2.1.0"; + sha256 = "07b5cwcn0n68fzgafz2zcrcqm84dx12axq3s68n81az302v9r2wr"; + setupHaskellDepends = [ base Cabal cabal-doctest ]; + libraryHaskellDepends = [ + base bifunctors bytestring containers contravariant digit + distributive errors generics-sop hoist-error hw-balancedparens + hw-bits hw-json hw-prim hw-rankselect lens mmorph mtl nats parsers + scientific semigroupoids semigroups tagged text transformers vector + witherable wl-pprint-annotated zippers + ]; + testHaskellDepends = [ + attoparsec base bytestring containers digit directory distributive + doctest filepath generics-sop hedgehog hedgehog-fn lens mtl + scientific semigroupoids semigroups tagged tasty + tasty-expected-failure tasty-hedgehog tasty-hunit template-haskell + text vector zippers + ]; + description = "JSON wrangling"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "wacom-daemon" = callPackage ({ mkDerivation, aeson, base, bytestring, containers, directory , filepath, Glob, libnotify, process, select, text, udev @@ -223324,8 +225869,8 @@ self: { pname = "wave"; version = "0.1.5"; sha256 = "03zycmwrchhqvi37fdvlzz2d1vl4hy0i8xyys1zznw38qfq0h2i5"; - revision = "1"; - editedCabalFile = "1wvgxay0r5rpcc7yxkznxxcp1za0ifxvk87w0xrilxgb35r3izz8"; + revision = "2"; + editedCabalFile = "0zs0mw42z9xzs1r935pd5dssf0x10qbkhxlpfknv0x75n2k0azzj"; enableSeparateDataOutput = true; libraryHaskellDepends = [ base bytestring cereal containers data-default-class transformers @@ -223807,6 +226352,40 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "web3_0_8_2_0" = callPackage + ({ mkDerivation, aeson, async, base, basement, bytestring, cereal + , cryptonite, data-default, exceptions, generics-sop, hspec + , hspec-contrib, hspec-discover, hspec-expectations, http-client + , http-client-tls, machines, memory, microlens, microlens-aeson + , microlens-mtl, microlens-th, mtl, OneTuple, parsec, random + , relapse, secp256k1-haskell, split, stm, tagged, template-haskell + , text, time, transformers, vinyl + }: + mkDerivation { + pname = "web3"; + version = "0.8.2.0"; + sha256 = "0gfz4011yflpjhg2397wq5761hq4r0g0yrkqljp1xsikq2jab72h"; + libraryHaskellDepends = [ + aeson async base basement bytestring cereal cryptonite data-default + exceptions generics-sop http-client http-client-tls machines memory + microlens microlens-aeson microlens-mtl microlens-th mtl OneTuple + parsec relapse secp256k1-haskell tagged template-haskell text + transformers vinyl + ]; + testHaskellDepends = [ + aeson async base basement bytestring cereal cryptonite data-default + exceptions generics-sop hspec hspec-contrib hspec-discover + hspec-expectations http-client http-client-tls machines memory + microlens microlens-aeson microlens-mtl microlens-th mtl OneTuple + parsec random relapse secp256k1-haskell split stm tagged + template-haskell text time transformers vinyl + ]; + testToolDepends = [ hspec-discover ]; + description = "Ethereum API for Haskell"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "webapi" = callPackage ({ mkDerivation, aeson, base, binary, blaze-builder, bytestring , bytestring-lexing, bytestring-trie, case-insensitive, containers @@ -224465,6 +227044,8 @@ self: { pname = "wedged"; version = "2"; sha256 = "1aw29dk0h25zw60m288423bakz36k0jpmzdhy7kq2wns3l5k6jqs"; + revision = "1"; + editedCabalFile = "0b3wq7pcz0m5qz7d9np5lhi3yh76ksx1v14bvsd6krr49p742zg5"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ @@ -224934,14 +227515,12 @@ self: { ({ mkDerivation, base, bytestring, deepseq, dnsapi }: mkDerivation { pname = "windns"; - version = "0.1.0.0"; - sha256 = "1hphwmwc1182p5aqjswcgqjbilm91rv5svjqhd93cqq599gg8q0c"; - revision = "3"; - editedCabalFile = "0j6gqyvhv7hxm5n249nrv0d9r41qb0yc4qdrzkjgs6lchndi6mrp"; + version = "0.1.0.1"; + sha256 = "016d1cf51jqvhbzlf5kbizv4l4dymradac1420rl47q2k5faczq8"; libraryHaskellDepends = [ base bytestring deepseq ]; librarySystemDepends = [ dnsapi ]; - description = "Domain Name Service (DNS) lookup via the Windows dnsapi standard library"; - license = stdenv.lib.licenses.gpl3; + description = "Domain Name Service (DNS) lookup via the /dnsapi.dll standard library"; + license = stdenv.lib.licenses.gpl2; hydraPlatforms = stdenv.lib.platforms.none; }) {dnsapi = null;}; @@ -225194,6 +227773,7 @@ self: { executableHaskellDepends = [ base bytestring network unix ]; description = "A network server to show bottlenecks of GHC"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "wizard" = callPackage @@ -226126,6 +228706,21 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "writer-cps-exceptions" = callPackage + ({ mkDerivation, base, exceptions, transformers + , writer-cps-transformers + }: + mkDerivation { + pname = "writer-cps-exceptions"; + version = "0.1.0.0"; + sha256 = "1s44h5d0f847w3j65frvjq2g6khz2ipsch109qnq5h2vcbgxid4v"; + libraryHaskellDepends = [ + base exceptions transformers writer-cps-transformers + ]; + description = "Control.Monad.Catch instances for the stricter CPS WriterT and RWST"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "writer-cps-full" = callPackage ({ mkDerivation, base, writer-cps-lens, writer-cps-morph , writer-cps-mtl, writer-cps-transformers @@ -226248,6 +228843,31 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "ws_0_0_5" = callPackage + ({ mkDerivation, async, attoparsec, attoparsec-uri, base + , bytestring, exceptions, haskeline, mtl, network + , optparse-applicative, strict, text, vector, websockets, wuss + }: + mkDerivation { + pname = "ws"; + version = "0.0.5"; + sha256 = "1qj4yq2z7ml88jgcqfy8i1cn1cbmdv56vg7v6b2inh4b4h41yax6"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + async attoparsec-uri base bytestring exceptions haskeline mtl + network text websockets wuss + ]; + executableHaskellDepends = [ + async attoparsec attoparsec-uri base bytestring exceptions + haskeline mtl network optparse-applicative strict text vector + websockets wuss + ]; + description = "A simple CLI utility for interacting with a websocket"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "ws-chans" = callPackage ({ mkDerivation, async, base, http-types, HUnit, network , QuickCheck, quickcheck-instances, test-framework @@ -226469,6 +229089,21 @@ self: { license = stdenv.lib.licenses.mit; }) {}; + "wuss_1_1_11" = callPackage + ({ mkDerivation, base, bytestring, connection, network, websockets + }: + mkDerivation { + pname = "wuss"; + version = "1.1.11"; + sha256 = "1mlqgi80r5db0j58r0laiwp1044n4insq89bv1v3y26j726yjvp0"; + libraryHaskellDepends = [ + base bytestring connection network websockets + ]; + description = "Secure WebSocket (WSS) clients"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "wx" = callPackage ({ mkDerivation, base, stm, time, wxcore }: mkDerivation { @@ -226708,10 +229343,8 @@ self: { }: mkDerivation { pname = "x509"; - version = "1.7.4"; - sha256 = "1vm1ir0q7nxcyq65bmw7hbwlmf3frya077v9jikcrh8igg18m717"; - revision = "1"; - editedCabalFile = "0p9zzzj118n8ymacj6yp7nkf22d09mj31wnzc1alq26w2ybcrifz"; + version = "1.7.5"; + sha256 = "1j67c35g8334jx7x32hh6awhr43dplp0qwal5gnlkmx09axzrc5i"; libraryHaskellDepends = [ asn1-encoding asn1-parse asn1-types base bytestring containers cryptonite hourglass memory mtl pem @@ -226731,8 +229364,8 @@ self: { }: mkDerivation { pname = "x509-store"; - version = "1.6.6"; - sha256 = "0dbndqmnmyixxc7308nyq3zlkhz9dff4rbcw2a49c77rbicny9va"; + version = "1.6.7"; + sha256 = "1y8yyr1i95jkllg8k0z54k5v4vachp848clc07m33xpxidn3b1lp"; libraryHaskellDepends = [ asn1-encoding asn1-types base bytestring containers cryptonite directory filepath mtl pem x509 @@ -226760,21 +229393,22 @@ self: { "x509-util" = callPackage ({ mkDerivation, asn1-encoding, asn1-types, base, bytestring - , cryptonite, directory, hourglass, pem, x509, x509-store + , cryptonite, directory, hourglass, memory, pem, x509, x509-store , x509-system, x509-validation }: mkDerivation { pname = "x509-util"; - version = "1.6.4"; - sha256 = "0qv33r1p1mdl8yskl0hzy3s989y929lk2q23i9qb9fb6w63g6nfb"; + version = "1.6.5"; + sha256 = "1d8s1aaymc0bim871cblv1jpy6vnkadxz4spd7wpr90vswkd2hl7"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ asn1-encoding asn1-types base bytestring cryptonite directory - hourglass pem x509 x509-store x509-system x509-validation + hourglass memory pem x509 x509-store x509-system x509-validation ]; description = "Utility for X509 certificate and chain"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "x509-validation" = callPackage @@ -226784,17 +229418,16 @@ self: { }: mkDerivation { pname = "x509-validation"; - version = "1.6.10"; - sha256 = "1ms51scawldgyfcim5a2qlgyn3rnrclyh205d6djaa1569vrs73n"; - revision = "1"; - editedCabalFile = "1isap8v1gh31q4pj3gn155ya8nd1da0a5a3cryqh4yhf0ivbwl0w"; + version = "1.6.11"; + sha256 = "16yihzljql3z8w5rgdl95fv3hgk7yd86kbl9b3glllsark5j2hzr"; libraryHaskellDepends = [ asn1-encoding asn1-types base bytestring containers cryptonite data-default-class hourglass memory mtl pem x509 x509-store ]; testHaskellDepends = [ asn1-encoding asn1-types base bytestring cryptonite - data-default-class hourglass tasty tasty-hunit x509 x509-store + data-default-class hourglass memory tasty tasty-hunit x509 + x509-store ]; description = "X.509 Certificate and CRL validation"; license = stdenv.lib.licenses.bsd3; @@ -228120,8 +230753,8 @@ self: { pname = "xmlhtml"; version = "0.2.5.2"; sha256 = "1p2v1cj9jjwbqyb0fyv2201zd7ljz5d46qg5kwy7rz2bchbqd0b4"; - revision = "1"; - editedCabalFile = "15lvbvdcagnqr62wfs3zz9xlcv553jr4ixbl50fsaxhkvlnymk45"; + revision = "2"; + editedCabalFile = "1d7q7acdv72zbbqq2n0swf3ia3lz1zplni6q5r97sp2w1a3xm6hf"; libraryHaskellDepends = [ base blaze-builder blaze-html blaze-markup bytestring bytestring-builder containers parsec text unordered-containers @@ -228369,8 +231002,8 @@ self: { }: mkDerivation { pname = "xmonad-extras"; - version = "0.14"; - sha256 = "1p1xc8qcrrdv3hhvlmg6l6mcywz7q2i81y6frnf3iz00n01b3d9f"; + version = "0.15"; + sha256 = "0yi6p4s9vl92bnr0sbcvm80x37n4fyglm4x3lrc9l8mapbpxjr02"; configureFlags = [ "-f-with_hlist" "-fwith_parsec" "-fwith_split" ]; @@ -228465,6 +231098,8 @@ self: { pname = "xmonad-wallpaper"; version = "0.0.1.4"; sha256 = "0f6214kqp86xnk1zginjiprnqlj2fzcvh3w5sv3yvqg98mwdd0cg"; + revision = "1"; + editedCabalFile = "1vxgv702wgr0k0kzd602v8xv11q5dap4mfhqifnr928bwf9scp28"; libraryHaskellDepends = [ base magic mtl random unix xmonad ]; description = "xmonad wallpaper extension"; license = stdenv.lib.licenses.lgpl3; @@ -229405,15 +232040,14 @@ self: { ({ mkDerivation, base, blank-canvas, stm, time, Yampa }: mkDerivation { pname = "yampa-canvas"; - version = "0.2.2"; - sha256 = "0g1yvb6snnsbvy2f74lrlqff5zgnvfh2f6r8xdwxi61dk71qsz0n"; - revision = "7"; - editedCabalFile = "1bj5ncrkwjpvjvrx0s23ksvwwsrybj7zl3sghl1d034wd9r89mxx"; + version = "0.2.3"; + sha256 = "0a1pq1psmc4490isr19z4prnqq1w3374vkfmzpw9s20s2p6k5y7r"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ base blank-canvas stm time Yampa ]; description = "blank-canvas frontend for Yampa"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "yampa-glfw" = callPackage @@ -229434,6 +232068,20 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "yampa-gloss" = callPackage + ({ mkDerivation, base, gloss, Yampa }: + mkDerivation { + pname = "yampa-gloss"; + version = "0.1.0.0"; + sha256 = "1h9x76swrq64add2v6935542gh5l5rpf5nqdy1nl2q78ksk6r04g"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ base gloss Yampa ]; + description = "A GLOSS backend for Yampa"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "yampa-glut" = callPackage ({ mkDerivation, base, GLUT, newtype, OpenGL, vector-space , Yampa-core @@ -229477,8 +232125,8 @@ self: { }: mkDerivation { pname = "yampa-test"; - version = "0.1.0.0"; - sha256 = "1d69qa8dzwsj6pawlg88vwv1r2ig2vnx11zbaq0pbl5hczfnknpd"; + version = "0.1.1"; + sha256 = "1qc1aic4apml5akq056i5c460x12hf613r1zkisshjm0na4gx5mb"; libraryHaskellDepends = [ base normaldistribution QuickCheck Yampa ]; @@ -229487,6 +232135,7 @@ self: { ]; description = "Testing library for Yampa"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "yampa2048" = callPackage @@ -231052,8 +233701,8 @@ self: { }: mkDerivation { pname = "yesod-markdown"; - version = "0.12.3"; - sha256 = "10vnip7yifq3li4jwql5pzrdaqf1z2bb4h99rf1iqzvd3b8mqq30"; + version = "0.12.4"; + sha256 = "14fpjdx5bn9qflarj4za5ncqd7q3dlpa71y76x7z9inz1k1jx684"; libraryHaskellDepends = [ base blaze-html blaze-markup bytestring directory pandoc persistent shakespeare text xss-sanitize yesod-core yesod-form @@ -231450,6 +234099,23 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "yesod-recaptcha2_0_3_0" = callPackage + ({ mkDerivation, aeson, base, classy-prelude, http-conduit + , yesod-auth, yesod-core, yesod-form + }: + mkDerivation { + pname = "yesod-recaptcha2"; + version = "0.3.0"; + sha256 = "12bgj16vfmvk6ri55wmx444njhlmf11v4cins8c1a6isjk8alhhc"; + libraryHaskellDepends = [ + aeson base classy-prelude http-conduit yesod-auth yesod-core + yesod-form + ]; + description = "yesod recaptcha2"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "yesod-routes" = callPackage ({ mkDerivation, base, bytestring, containers, hspec, HUnit , path-pieces, template-haskell, text, vector @@ -232541,6 +235207,18 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "yoda" = callPackage + ({ mkDerivation, base }: + mkDerivation { + pname = "yoda"; + version = "0.1.3.0"; + sha256 = "0qkg8aykr8whjrkwfnsds3bjbrb51r83rd60mpdwcs12zyqlpi0d"; + libraryHaskellDepends = [ base ]; + description = "Parser combinators for young padawans"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "yoga" = callPackage ({ mkDerivation, base, bindings-DSL, ieee754 }: mkDerivation { @@ -232970,8 +235648,8 @@ self: { }: mkDerivation { pname = "zephyr"; - version = "0.2.0"; - sha256 = "0n0z7s71gjlpra4ghfd51rcz5yqddzzwfdpjnhlxciakrabc5m3f"; + version = "0.2.1"; + sha256 = "0yhpy1dwh1axbh3xgxn97vnh616pywz56r7gy6sfvqaxj9bqviha"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -233567,8 +236245,8 @@ self: { ({ mkDerivation, base, multirec }: mkDerivation { pname = "zipper"; - version = "0.4.2"; - sha256 = "1r8092amq5w9gl5szycl1r7wx87xnmkcapdzcwfa4c3pvxrhjy44"; + version = "0.4.3"; + sha256 = "1p8yn91snyv5p6bmll7d0gm0zbrhp99fl4kziq0vkbchlpcdjapf"; libraryHaskellDepends = [ base multirec ]; description = "Generic zipper for families of recursive datatypes"; license = stdenv.lib.licenses.bsd3; diff --git a/pkgs/development/haskell-modules/lib.nix b/pkgs/development/haskell-modules/lib.nix index f4ebe549c5026ce60936cac566f56eabffe8dc00..3d67ac2139938b0cc7b8244e6132d4be6d429524 100644 --- a/pkgs/development/haskell-modules/lib.nix +++ b/pkgs/development/haskell-modules/lib.nix @@ -354,4 +354,55 @@ rec { in builtins.listToAttrs (map toKeyVal haskellPaths); + + addOptparseApplicativeCompletionScripts = exeName: pkg: + builtins.trace "addOptparseApplicativeCompletionScripts is deprecated in favor of generateOptparseApplicativeCompletion. Please change ${pkg.name} to use the latter or its plural form." + (generateOptparseApplicativeCompletion exeName pkg); + + /* + Modify a Haskell package to add shell completion scripts for the + given executable produced by it. These completion scripts will be + picked up automatically if the resulting derivation is installed, + e.g. by `nix-env -i`. + + Invocation: + generateOptparseApplicativeCompletions command pkg + + + command: name of an executable + pkg: Haskell package that builds the executables + */ + generateOptparseApplicativeCompletion = exeName: pkg: overrideCabal pkg (drv: { + postInstall = (drv.postInstall or "") + '' + bashCompDir="$out/share/bash-completion/completions" + zshCompDir="$out/share/zsh/vendor-completions" + fishCompDir="$out/share/fish/vendor_completions.d" + mkdir -p "$bashCompDir" "$zshCompDir" "$fishCompDir" + "$out/bin/${exeName}" --bash-completion-script "$out/bin/${exeName}" >"$bashCompDir/${exeName}" + "$out/bin/${exeName}" --zsh-completion-script "$out/bin/${exeName}" >"$zshCompDir/_${exeName}" + "$out/bin/${exeName}" --fish-completion-script "$out/bin/${exeName}" >"$fishCompDir/${exeName}.fish" + + # Sanity check + grep -F ${exeName} <$bashCompDir/${exeName} >/dev/null || { + echo 'Could not find ${exeName} in completion script.' + exit 1 + } + ''; + }); + + /* + Modify a Haskell package to add shell completion scripts for the + given executables produced by it. These completion scripts will be + picked up automatically if the resulting derivation is installed, + e.g. by `nix-env -i`. + + Invocation: + generateOptparseApplicativeCompletions commands pkg + + + commands: name of an executable + pkg: Haskell package that builds the executables + */ + generateOptparseApplicativeCompletions = commands: pkg: + pkgs.lib.foldr generateOptparseApplicativeCompletion pkg commands; } diff --git a/pkgs/development/haskell-modules/patches/opencv-fix-116.patch b/pkgs/development/haskell-modules/patches/opencv-fix-116.patch new file mode 100644 index 0000000000000000000000000000000000000000..bf89d8daf9fcf3c1c08ef6d1ba49b8c79907529c --- /dev/null +++ b/pkgs/development/haskell-modules/patches/opencv-fix-116.patch @@ -0,0 +1,11 @@ +diff -ur opencv-0.0.2.1.bak/Setup.hs opencv-0.0.2.1/Setup.hs +--- opencv-0.0.2.1.bak/Setup.hs 2018-11-10 17:18:41.355731189 +0100 ++++ opencv-0.0.2.1/Setup.hs 2018-11-10 17:18:56.901681162 +0100 +@@ -3,6 +3,6 @@ + + main = do + args <- getArgs +- let args' | "configure" `elem` args = args ++ ["--with-gcc","c++", "--with-ld","c++"] ++ let args' | "configure" `elem` args = args ++ ["--with-gcc","c++"] + | otherwise = args + defaultMainArgs args' diff --git a/pkgs/development/interpreters/clojurescript/lumo/default.nix b/pkgs/development/interpreters/clojurescript/lumo/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..bc2d0e5be5a8c85f2612d0dd0fe09c88018df19a --- /dev/null +++ b/pkgs/development/interpreters/clojurescript/lumo/default.nix @@ -0,0 +1,257 @@ +{ stdenv, lib, fetchurl, clojure, + nodejs, jre, unzip, nodePackages, + python, openssl, pkgs }: + +let # packageJSON=./package.json; + version = "1.9.0"; + nodeVersion = "10.9.0"; + nodeSources = fetchurl { + url="https://nodejs.org/dist/v${nodeVersion}/node-v${nodeVersion}.tar.gz"; + sha256="0wgawq3wzw07pir73bxz13dggcc1fj0538y7y69n3cc0a2kiplqy"; + }; + lumo-internal-classpath = "LUMO__INTERNAL__CLASSPATH"; + + # as found in cljs/snapshot/lumo/repl.cljs + requireDeps = '' \ + cljs.analyzer \ + cljs.compiler \ + cljs.env \ + cljs.js \ + cljs.reader \ + cljs.repl \ + cljs.source-map \ + cljs.source-map.base64 \ + cljs.source-map.base64-vlq \ + cljs.spec.alpha \ + cljs.spec.gen.alpha \ + cljs.tagged-literals \ + cljs.tools.reader \ + cljs.tools.reader.reader-types \ + cljs.tools.reader.impl.commons \ + cljs.tools.reader.impl.utils \ + clojure.core.rrb-vector \ + clojure.core.rrb-vector.interop \ + clojure.core.rrb-vector.nodes \ + clojure.core.rrb-vector.protocols \ + clojure.core.rrb-vector.rrbt \ + clojure.core.rrb-vector.transients \ + clojure.core.rrb-vector.trees \ + clojure.string \ + clojure.set \ + clojure.walk \ + cognitect.transit \ + fipp.visit \ + fipp.engine \ + fipp.deque \ + lazy-map.core \ + lumo.pprint.data \ + lumo.repl \ + lumo.repl-resources \ + lumo.js-deps \ + lumo.common ''; + + compileClojurescript = (simple: '' + (require '[cljs.build.api :as cljs]) + (cljs/build \"src/cljs/snapshot\" + {:optimizations ${if simple then ":simple" else ":none"} + :main 'lumo.core + :cache-analysis true + :source-map false + :dump-core false + :static-fns true + :optimize-constants false + :npm-deps false + :verbose true + :closure-defines {'cljs.core/*target* \"nodejs\" + 'lumo.core/*lumo-version* \"${version}\"} + :compiler-stats true + :process-shim false + :fn-invoke-direct true + :parallel-build false + :browser-repl false + :target :nodejs + :hashbang false + ;; :libs [ \"src/cljs/bundled\" \"src/js\" ] + :output-dir ${if simple + then ''\"cljstmp\"'' + else ''\"target\"''} + :output-to ${if simple + then ''\"cljstmp/main.js\"'' + else ''\"target/deleteme.js\"'' }}) + ''); + + + cacheToJsons = '' + (import [java.io ByteArrayOutputStream FileInputStream]) + (require '[cognitect.transit :as transit] + '[clojure.edn :as edn] + '[clojure.string :as str]) + + (defn write-transit-json [cache] + (let [out (ByteArrayOutputStream. 1000000) + writer (transit/writer out :json)] + (transit/write writer cache) + (.toString out))) + + (defn process-caches [] + (let [cache-aot-path \"target/cljs/core.cljs.cache.aot.edn\" + cache-aot-edn (edn/read-string (slurp cache-aot-path)) + cache-macros-path \"target/cljs/core\$macros.cljc.cache.json\" + cache-macros-stream (FileInputStream. cache-macros-path) + cache-macros-edn (transit/read (transit/reader cache-macros-stream :json)) + caches [[cache-aot-path cache-aot-edn] + [cache-macros-path cache-macros-edn]]] + (doseq [[path cache-edn] caches] + (doseq [key (keys cache-edn)] + (let [out-path (str/replace path #\"(\.json|\.edn)\$\" + (str \".\" (munge key) \".json\")) + tr-json (write-transit-json (key cache-edn))] + (spit out-path tr-json)))))) + + (process-caches) + ''; + + trimMainJsEnd = '' + (let [string (slurp \"target/main.js\")] + (spit \"target/main.js\" + (subs string 0 (.indexOf string \"cljs.nodejs={};\")))) + ''; + + + cljdeps = import ./deps.nix { inherit pkgs; }; + cljpaths = cljdeps.makePaths {}; + classp = cljdeps.makeClasspaths { + extraClasspaths=["src/js" "src/cljs/bundled" "src/cljs/snapshot"]; + }; + + + getJarPath = jarName: (lib.findFirst (p: p.name == jarName) null cljdeps.packages).path.jar; + +in stdenv.mkDerivation rec { + inherit version; + name = "lumo-${version}"; + + src = fetchurl { + url = "https://github.com/anmonteiro/lumo/archive/${version}.tar.gz"; + sha256 = "1mr3zjslznhv7y3mzvg1pmmvzn10d6di26izz4x8p4nfnshacwgw"; + }; + + + buildInputs = [ nodejs clojure jre unzip python openssl + nodePackages."lumo-build-deps-../interpreters/clojurescript/lumo" ]; + + buildPhase = '' + # Copy over lumo-build-deps environment + rm yarn.lock + cp -rf ${nodePackages."lumo-build-deps-../interpreters/clojurescript/lumo"}/lib/node_modules/lumo-build-deps/* ./ + + # configure clojure-cli + mkdir ./.cpcache + export CLJ_CONFIG=`pwd` + export CLJ_CACHE=`pwd`/.cpcache + + # require more namespaces for cljs-bundle + sed -i "s!ns lumo.core! \ + ns lumo.core \ + (:require ${requireDeps}) \ + (:require-macros [clojure.template :as temp] \ + [cljs.test :as test])!g" \ + ./src/cljs/snapshot/lumo/core.cljs + + # Step 1: compile clojurescript with :none and :simple + ${clojure}/bin/clojure -Scp ${classp} -e "${compileClojurescript true}" + ${clojure}/bin/clojure -Scp ${classp} -e "${compileClojurescript false}" + cp -f cljstmp/main.js target/main.js + ${clojure}/bin/clojure -Scp ${classp} -e "${trimMainJsEnd}" + + # Step 2: sift files + unzip -o ${getJarPath "org.clojure/clojurescript"} -d ./target + unzip -j ${getJarPath "org.clojure/clojure"} "clojure/template.clj" -d ./target/clojure + unzip -o ${getJarPath "org.clojure/google-closure-library"} -d ./target + unzip -o ${getJarPath "org.clojure/google-closure-library-third-party"} -d ./target + unzip -o ${getJarPath "org.clojure/tools.reader"} -d ./target + unzip -o ${getJarPath "org.clojure/test.check"} -d ./target + cp -rf ./src/cljs/bundled/lumo/* ./target/lumo/ + cp -rf ./src/cljs/snapshot/lumo/repl.clj ./target/lumo/ + # cleanup + mv ./target/main.js ./target/main + rm ./target/*\.js + mv ./target/main ./target/main.js + rm ./target/AUTHORS + rm ./target/LICENSE + rm ./target/*.edn + rm ./target/*.md + rm -rf ./target/css + rm -rf ./target/META-INF + rm -rf ./target/com + rm -rf ./target/cljs/build + rm -rf ./target/cljs/repl + rm ./target/cljs/core\.cljs\.cache.aot\.json + rm ./target/cljs/source_map\.clj + rm ./target/cljs/repl\.cljc + rm ./target/cljs/externs\.clj + rm ./target/cljs/closure\.clj + rm ./target/cljs/util\.cljc + rm ./target/cljs/js_deps\.cljc + rm ./target/cljs/analyzer/utils\.clj + rm ./target/cljs/core/macros\.clj + rm ./target/cljs/compiler/api.clj + rm ./target/goog/test_module* + rm ./target/goog/transpile\.js + rm ./target/goog/base_* + find ./target -type f -name '*.class' -delete + find ./target -type d -empty -delete + + # Step 3: generate munged cache jsons + ${clojure}/bin/clojure -Scp ${classp} -e "${cacheToJsons}" + rm ./target/cljs/core\$macros\.cljc\.cache\.json + + + # Step 4: Bunde javascript + NODE_ENV=production node scripts/bundle.js + node scripts/bundleForeign.js + + # Step 5: Backup resources + cp -R target resources_bak + + # Step 6: Package executeable 1st time + # fetch node sources and copy to palce that nexe will find + mkdir -p tmp/${nodeVersion} + cp ${nodeSources} tmp/${nodeVersion}/node-${nodeVersion}.tar.gz + tar -C ./tmp/${nodeVersion} -xf ${nodeSources} + mv ./tmp/${nodeVersion}/node-v${nodeVersion}/* ./tmp/${nodeVersion}/ + rm -rf ${lumo-internal-classpath} + mv target ${lumo-internal-classpath} + node scripts/package.js ${nodeVersion} + rm -rf ${lumo-internal-classpath} + + # Step 7: AOT Macros + sh scripts/aot-bundle-macros.sh + + # Step 8: Package executeable 2nd time + rm -rf ${lumo-internal-classpath} + mv target ${lumo-internal-classpath} + node scripts/package.js ${nodeVersion} + ''; + + dontStrip = true; + + installPhase = '' + mkdir -p $out/bin + cp build/lumo $out/bin + ''; + + meta = { + description = "Fast, cross-platform, standalone ClojureScript environment"; + longDescription = '' + Lumo is a fast, standalone ClojureScript REPL that runs on Node.js and V8. + Thanks to V8's custom startup snapshots, Lumo starts up instantaneously, + making it the fastest Clojure REPL in existence. + ''; + homepage = https://github.com/anmonteiro/lumo; + license = stdenv.lib.licenses.epl10; + maintainers = [ stdenv.lib.maintainers.hlolli ]; + platforms = stdenv.lib.platforms.linux; + }; +} + diff --git a/pkgs/development/interpreters/clojurescript/lumo/deps.edn b/pkgs/development/interpreters/clojurescript/lumo/deps.edn new file mode 100644 index 0000000000000000000000000000000000000000..e1563599a8cc660b33a4acf5ba046bf35735e484 --- /dev/null +++ b/pkgs/development/interpreters/clojurescript/lumo/deps.edn @@ -0,0 +1,12 @@ +{:deps + {org.clojure/clojure {:mvn/version "1.10.0-beta5"} + org.clojure/clojurescript {:mvn/version "1.10.439"} + org.clojure/test.check {:mvn/version "0.10.0-alpha3"} + org.clojure/tools.reader {:mvn/version "1.3.2" + :exclusions [org.clojure/clojure org.clojure/clojurescript]} + com.cognitect/transit-cljs {:mvn/version "0.8.256" + :exclusions [org.clojure/clojure org.clojure/clojurescript]} + malabarba/lazy-map {:mvn/version "1.3" + :exclusions [org.clojure/clojure org.clojure/clojurescript]} + fipp {:mvn/version "0.6.14" + :exclusions [org.clojure/clojure org.clojure/clojurescript]}}} diff --git a/pkgs/development/interpreters/clojurescript/lumo/deps.nix b/pkgs/development/interpreters/clojurescript/lumo/deps.nix new file mode 100644 index 0000000000000000000000000000000000000000..3e53c7f98dd796c55d4bd5b50fa17d8eea5a0e6a --- /dev/null +++ b/pkgs/development/interpreters/clojurescript/lumo/deps.nix @@ -0,0 +1,393 @@ +# generated by clj2nix-1.0.3 +{ pkgs }: + + let repos = [ + "https://repo.clojars.org/" + "https://repo1.maven.org/" + "http://central.maven.org/maven2/" + "http://oss.sonatype.org/content/repositories/releases/" + "http://oss.sonatype.org/content/repositories/public/" + "http://repo.typesafe.com/typesafe/releases/" + ]; + + in rec { + makePaths = {extraClasspaths ? []}: (builtins.map (dep: if builtins.hasAttr "jar" dep.path then dep.path.jar else dep.path) packages) ++ extraClasspaths; + makeClasspaths = {extraClasspaths ? []}: builtins.concatStringsSep ":" (makePaths {inherit extraClasspaths;}); + + packages = [ + { + name = "com.cognitect/transit-java"; + path = pkgs.fetchMavenArtifact { + inherit repos; + artifactId = "transit-java"; + groupId = "com.cognitect"; + sha512 = "80365a4f244e052b6c4fdfd2fd3b91288835599cb4dd88e0e0dae19883dcda39afee83966810ed81beff342111c3a45a66f5601c443f3ad49904908c43631708"; + version = "0.8.332"; + }; + } + + { + name = "org.clojure/data.json"; + path = pkgs.fetchMavenArtifact { + inherit repos; + artifactId = "data.json"; + groupId = "org.clojure"; + sha512 = "ce526bef01bedd31b772954d921a61832ae60af06121f29080853f7932326438b33d183240a9cffbe57e00dc3744700220753948da26b8973ee21c30e84227a6"; + version = "0.2.6"; + }; + } + + { + name = "org.clojure/clojure"; + path = pkgs.fetchMavenArtifact { + inherit repos; + artifactId = "clojure"; + groupId = "org.clojure"; + sha512 = "f7a6b207b1bcbb6523d32ecfdd3c8c25d4d0b0a59c78baf06cdc69ba3c21c5e96b5dac8e9efcb331efd94e10bccbb9b54fca62a4312309db65a1f9d89d9da3f4"; + version = "1.10.0-beta5"; + }; + } + + { + name = "commons-codec/commons-codec"; + path = pkgs.fetchMavenArtifact { + inherit repos; + artifactId = "commons-codec"; + groupId = "commons-codec"; + sha512 = "8edecc0faf38e8620460909d8191837f34e2bb2ce853677c486c5e79bb79e88d043c3aed69c11f1365c4884827052ee4e1c18ca56e38d1a5bc0ce15c57daeee3"; + version = "1.10"; + }; + } + + { + name = "com.google.errorprone/error_prone_annotations"; + path = pkgs.fetchMavenArtifact { + inherit repos; + artifactId = "error_prone_annotations"; + groupId = "com.google.errorprone"; + sha512 = "bd2135cc9eb2c652658a2814ec9c565fa3e071d4cff590cbe17b853885c78c9f84c1b7b24ba736f4f30ed8cec60a6af983827fcbed61ff142f27ac808e97fc6b"; + version = "2.1.3"; + }; + } + + { + name = "org.clojure/core.specs.alpha"; + path = pkgs.fetchMavenArtifact { + inherit repos; + artifactId = "core.specs.alpha"; + groupId = "org.clojure"; + sha512 = "348c0ea0911bc0dcb08655e61b97ba040649b4b46c32a62aa84d0c29c245a8af5c16d44a4fa5455d6ab076f4bb5bbbe1ad3064a7befe583f13aeb9e32a169bf4"; + version = "0.2.44"; + }; + } + + { + name = "org.clojure/spec.alpha"; + path = pkgs.fetchMavenArtifact { + inherit repos; + artifactId = "spec.alpha"; + groupId = "org.clojure"; + sha512 = "18c97fb2b74c0bc2ff4f6dc722a3edec539f882ee85d0addf22bbf7e6fe02605d63f40c2b8a2905868ccd6f96cfc36a65f5fb70ddac31c6ec93da228a456edbd"; + version = "0.2.176"; + }; + } + + { + name = "org.codehaus.mojo/animal-sniffer-annotations"; + path = pkgs.fetchMavenArtifact { + inherit repos; + artifactId = "animal-sniffer-annotations"; + groupId = "org.codehaus.mojo"; + sha512 = "9e5e3ea9e06e0ac9463869fd0e08ed38f7042784995a7b50c9bfd7f692a53f0e1430b9e1367dc772d0d4eafe5fd2beabbcc60da5008bd792f9e7ec8436c0f136"; + version = "1.14"; + }; + } + + { + name = "com.googlecode.json-simple/json-simple"; + path = pkgs.fetchMavenArtifact { + inherit repos; + artifactId = "json-simple"; + groupId = "com.googlecode.json-simple"; + sha512 = "f8798bfbcc8ab8001baf90ce47ec2264234dc1da2d4aa97fdcdc0990472a6b5a5a32f828e776140777d598a99d8a0c0f51c6d0767ae1a829690ab9200ae35742"; + version = "1.1.1"; + }; + } + + { + name = "com.cognitect/transit-cljs"; + path = pkgs.fetchMavenArtifact { + inherit repos; + artifactId = "transit-cljs"; + groupId = "com.cognitect"; + sha512 = "318b98ddd63629f37b334bb90e625bc31ab6abcf0b1fa80d8e097551658f2d9219b5ee35869a31f2976d7d385da83bea0c07b0d097babcae241ecbd0fe8a7ecd"; + version = "0.8.256"; + }; + } + + { + name = "org.clojure/google-closure-library"; + path = pkgs.fetchMavenArtifact { + inherit repos; + artifactId = "google-closure-library"; + groupId = "org.clojure"; + sha512 = "75631182ef12f21723fe3eba1003d8cf9b8348a51512961e4e1b87bc24d8f3abb14a70c856f08cdaa5588a2d7c2b1b0c03aeaa3c4c5f2ed745a85f59ceeab83a"; + version = "0.0-20170809-b9c14c6b"; + }; + } + + { + name = "fipp"; + path = pkgs.fetchMavenArtifact { + inherit repos; + artifactId = "fipp"; + groupId = "fipp"; + sha512 = "155b5bb7045ac7c3a75c638e65464ca1fc90e5b4692328fc2da73b26792178fdbce5ab01ba0397e1986b6162b06b8904712d2c366f32ea43ea5fa2b454a526a5"; + version = "0.6.14"; + }; + } + + { + name = "org.clojure/clojurescript"; + path = pkgs.fetchMavenArtifact { + inherit repos; + artifactId = "clojurescript"; + groupId = "org.clojure"; + sha512 = "4aec5abdd48aaf95f7a729e11d225a99d02caa3a4ddff3e9e4f8db80dea83ab70a4440691cb372562c8c16e73c2850b22806a2851df3849c852fddd49b57fc58"; + version = "1.10.439"; + }; + } + + { + name = "com.google.jsinterop/jsinterop-annotations"; + path = pkgs.fetchMavenArtifact { + inherit repos; + artifactId = "jsinterop-annotations"; + groupId = "com.google.jsinterop"; + sha512 = "b6fd98a9167d031f6bff571567d4658fda62c132dc74d47ca85e02c9bb3ce8812b1012c67f4c81501ab0cbd9ccd9cda5dcf32d306e04368ace7a173cecae975d"; + version = "1.0.0"; + }; + } + + { + name = "com.fasterxml.jackson.core/jackson-core"; + path = pkgs.fetchMavenArtifact { + inherit repos; + artifactId = "jackson-core"; + groupId = "com.fasterxml.jackson.core"; + sha512 = "a1bd6c264b9ab07aad3d0f26b65757e35ff47904ab895bb7f997e3e1fd063129c177ad6f69876907b04ff8a43c6b1770a26f53a811633a29e66a5dce57194f64"; + version = "2.8.7"; + }; + } + + { + name = "malabarba/lazy-map"; + path = pkgs.fetchMavenArtifact { + inherit repos; + artifactId = "lazy-map"; + groupId = "malabarba"; + sha512 = "ce56d6f03ac344579e15f062cdd4c477c0323da716d4d4106c4edb746959699e0b294b25aacf8ecf1579a6bdd5556a60f4bcb1648d22832984c069a0431c840f"; + version = "1.3"; + }; + } + + { + name = "com.cognitect/transit-js"; + path = pkgs.fetchMavenArtifact { + inherit repos; + artifactId = "transit-js"; + groupId = "com.cognitect"; + sha512 = "6ca0978e633e41b45ff5a76df79099ba7c4900a8ca9f6acd2a903e4ab10a1ec0c83d4127009df9dac1337debaba01f7ff1d5cced1c2159c05ef94845f73f0623"; + version = "0.8.846"; + }; + } + + { + name = "org.mozilla/rhino"; + path = pkgs.fetchMavenArtifact { + inherit repos; + artifactId = "rhino"; + groupId = "org.mozilla"; + sha512 = "466e7a76303ea191802b5e7adb3dff64c1d6283a25ce87447296b693b87b166f4cdd191ef7dc130a5739bfa0e4a81b08550f607c84eec167406d9be2225562dc"; + version = "1.7R5"; + }; + } + + { + name = "org.clojure/google-closure-library-third-party"; + path = pkgs.fetchMavenArtifact { + inherit repos; + artifactId = "google-closure-library-third-party"; + groupId = "org.clojure"; + sha512 = "57fa84fbbca3eb9e612d2842e4476b74f64d13dd076ffca6c9d9e15c4ca8a2f2c56cc19307bcad0ab5b4f9cb0c3e7900ccc845bd570ebc92e2633885ab621f35"; + version = "0.0-20170809-b9c14c6b"; + }; + } + + { + name = "com.google.javascript/closure-compiler-externs"; + path = pkgs.fetchMavenArtifact { + inherit repos; + artifactId = "closure-compiler-externs"; + groupId = "com.google.javascript"; + sha512 = "1a47c8559144095c0b23a8e40acd7185625cea5a4c103eb75fbacd32d5809d087bfb60aaf57066329649c6017ec5f993756024e767a5b8f84926371ba6183a82"; + version = "v20180805"; + }; + } + + { + name = "org.javassist/javassist"; + path = pkgs.fetchMavenArtifact { + inherit repos; + artifactId = "javassist"; + groupId = "org.javassist"; + sha512 = "ad65ee383ed83bedecc2073118cb3780b68b18d5fb79a1b2b665ff8529df02446ad11e68f9faaf4f2e980065f5946761a59ada379312cbb22d002625abed6a4f"; + version = "3.18.1-GA"; + }; + } + + { + name = "com.google.guava/guava"; + path = pkgs.fetchMavenArtifact { + inherit repos; + artifactId = "guava"; + groupId = "com.google.guava"; + sha512 = "429ceeec0350ba98e2b089b8b70ded2ec570c3a684894a7545d10592c1c7be42dacd1fad8b2cb9123aa3612575ce1b56e1bb54923443fc293f8e9adeac2762ee"; + version = "25.1-jre"; + }; + } + + { + name = "org.msgpack/msgpack"; + path = pkgs.fetchMavenArtifact { + inherit repos; + artifactId = "msgpack"; + groupId = "org.msgpack"; + sha512 = "a2741bed01f9c37ba3dbe6a7ab9ce936d36d4da97c35e215250ac89ac0851fc5948d83975ea6257d5dce1d43b6b5147254ecfb4b33f9bbdc489500b3ff060449"; + version = "0.6.12"; + }; + } + + { + name = "com.google.j2objc/j2objc-annotations"; + path = pkgs.fetchMavenArtifact { + inherit repos; + artifactId = "j2objc-annotations"; + groupId = "com.google.j2objc"; + sha512 = "a4a0b58ffc2d9f9b516f571bcd0ac14e4d3eec15aacd6320a4a1a12045acce8c6081e8ce922c4e882221cedb2cc266399ab468487ae9a08124d65edc07ae30f0"; + version = "1.1"; + }; + } + + { + name = "com.cognitect/transit-clj"; + path = pkgs.fetchMavenArtifact { + inherit repos; + artifactId = "transit-clj"; + groupId = "com.cognitect"; + sha512 = "ad838d9e5688c8cebe54972ad0c9a6db428ec1cece8c8b078e8e8d4b0c7870b328239d2bc9dd8fcbedcba56ca0de9afb5a0a843ff5f630dc039118de7eb45eba"; + version = "0.8.309"; + }; + } + + { + name = "args4j/args4j"; + path = pkgs.fetchMavenArtifact { + inherit repos; + artifactId = "args4j"; + groupId = "args4j"; + sha512 = "5f0651234c8f8b130fddb39fa832c6da47d3e21bc3434307554314c47e672c28d005c64e9effe85d552190cfc27966b1f005740ffd40b4e1bec2cb257d7feedb"; + version = "2.0.26"; + }; + } + + { + name = "org.clojure/core.rrb-vector"; + path = pkgs.fetchMavenArtifact { + inherit repos; + artifactId = "core.rrb-vector"; + groupId = "org.clojure"; + sha512 = "5f737bf3ca3acf567b2b5c14b5761c8c38e94e1f6168f8cba9f46d2ae41334ae3d68d2c00663827a6214094d96b9767f6803f66ab44b0012c6f2e3c2997b1796"; + version = "0.0.13"; + }; + } + + { + name = "org.checkerframework/checker-qual"; + path = pkgs.fetchMavenArtifact { + inherit repos; + artifactId = "checker-qual"; + groupId = "org.checkerframework"; + sha512 = "3c38b0b9e0bde464268cff5fdb1894a048240b039093ee3abe5b32976a22737d26b355f8793f630a7f0b319fdb019a6fcd9ee1d5219676f0f10c0b0f496b61b7"; + version = "2.0.0"; + }; + } + + { + name = "org.clojure/tools.reader"; + path = pkgs.fetchMavenArtifact { + inherit repos; + artifactId = "tools.reader"; + groupId = "org.clojure"; + sha512 = "290a2d98b2eec08a8affc2952006f43c0459c7e5467dc454f5fb5670ea7934fa974e6be19f7e7c91dadcfed62082d0fbcc7788455b7446a2c9c5af02f7fc52b6"; + version = "1.3.2"; + }; + } + + { + name = "com.google.javascript/closure-compiler-unshaded"; + path = pkgs.fetchMavenArtifact { + inherit repos; + artifactId = "closure-compiler-unshaded"; + groupId = "com.google.javascript"; + sha512 = "4fa7029aabd9ff84255d56004707486726db9c770f43cb10dc44fb53a3254d588a0f47f937f55401d7f319267ec2362c87f5ea709bcfa06f12a66fe22cb8c53d"; + version = "v20180805"; + }; + } + + { + name = "org.clojure/test.check"; + path = pkgs.fetchMavenArtifact { + inherit repos; + artifactId = "test.check"; + groupId = "org.clojure"; + sha512 = "bf57571a9d31d50cf15b38134f4d7c34d03eb458bc62b30c7a1dbf233e300c67f1fda6673dbd1584a0497cf8875f972e6697e7f13d0c3e70e4254697b1b75cc6"; + version = "0.10.0-alpha3"; + }; + } + + { + name = "com.google.protobuf/protobuf-java"; + path = pkgs.fetchMavenArtifact { + inherit repos; + artifactId = "protobuf-java"; + groupId = "com.google.protobuf"; + sha512 = "230fc4360b8b2ee10eb73d756c58478b6c779433aa4ca91938404bbfd0ada516d3215664dbe953c96649e33bbef293958e4ad4616671f0c246883196ece92998"; + version = "3.0.2"; + }; + } + + { + name = "com.google.code.findbugs/jsr305"; + path = pkgs.fetchMavenArtifact { + inherit repos; + artifactId = "jsr305"; + groupId = "com.google.code.findbugs"; + sha512 = "bb09db62919a50fa5b55906013be6ca4fc7acb2e87455fac5eaf9ede2e41ce8bbafc0e5a385a561264ea4cd71bbbd3ef5a45e02d63277a201d06a0ae1636f804"; + version = "3.0.2"; + }; + } + + { + name = "com.google.code.gson/gson"; + path = pkgs.fetchMavenArtifact { + inherit repos; + artifactId = "gson"; + groupId = "com.google.code.gson"; + sha512 = "c3cdaf66a99e6336abc80ff23374f6b62ac95ab2ae874c9075805e91d849b18e3f620cc202b4978fc92b73d98de96089c8714b1dd096b2ae1958cfa085715f7a"; + version = "2.7"; + }; + } + + ]; + } diff --git a/pkgs/development/interpreters/clojurescript/lumo/package.json b/pkgs/development/interpreters/clojurescript/lumo/package.json new file mode 100644 index 0000000000000000000000000000000000000000..358595ef1eb8ef0c482bf8e8440db03fad16299c --- /dev/null +++ b/pkgs/development/interpreters/clojurescript/lumo/package.json @@ -0,0 +1,42 @@ +{ + "name": "lumo-build-deps", + "version": "1.9.0", + "dependencies": { + "@babel/core": "^7.1.5", + "@babel/plugin-external-helpers": "7.0.0", + "@babel/plugin-proposal-class-properties": "^7.1.0", + "@babel/plugin-proposal-object-rest-spread": "^7.0.0", + "@babel/plugin-transform-runtime": "^7.1.0", + "@babel/preset-env": "^7.1.5", + "@babel/preset-stage-2": "7.0.0", + "@babel/runtime": "^7.1.5", + "async-retry": "^1.2.3", + "babel-core": "^7.0.0-bridge.0", + "babel-eslint": "10.0.1", + "babel-jest": "^23.6.0", + "babel-loader": "^8.0.4", + "babel-plugin-transform-flow-strip-types": "6.22.0", + "chalk": "^2.4.1", + "cross-env": "5.2.0", + "death": "^1.1.0", + "flow-bin": "0.85.0", + "google-closure-compiler-js": "20170910.0.1", + "jszip": "github:anmonteiro/jszip#patch-1", + "nexe": "3.0.0-beta.7", + "node-fetch": "^2.2.1", + "paredit.js": "0.3.4", + "posix-getopt": "github:anmonteiro/node-getopt#master", + "prettier": "1.15.1", + "progress": "^2.0.0", + "read-pkg": "^4.0.1", + "rollup": "0.67.0", + "rollup-plugin-babel": "4.0.3", + "rollup-plugin-babel-minify": "6.1.1", + "rollup-plugin-commonjs": "9.2.0", + "rollup-plugin-node-resolve": "3.4.0", + "rollup-plugin-replace": "2.1.0", + "webpack": "^4.25.1", + "webpack-cli": "^3.1.2", + "which-promise": "^1.0.0" + } +} diff --git a/pkgs/development/interpreters/groovy/default.nix b/pkgs/development/interpreters/groovy/default.nix index 95484c9258a6450321b87e2c9d105a65742585b9..1dfd3476d48453955fa9e11526dfc3922cdbecd3 100644 --- a/pkgs/development/interpreters/groovy/default.nix +++ b/pkgs/development/interpreters/groovy/default.nix @@ -4,11 +4,11 @@ stdenv.mkDerivation rec { name = "groovy-${version}"; - version = "2.5.2"; + version = "2.5.3"; src = fetchurl { url = "http://dl.bintray.com/groovy/maven/apache-groovy-binary-${version}.zip"; - sha256 = "0bi85gvgpwd9ndg0kiwlrp560934dzy1072zpf587vrmpvqrcps9"; + sha256 = "1iw5iiygl0a7dzh22gkjhzzxd7r8kb4lncjvvgqfpxx967djp527"; }; buildInputs = [ unzip makeWrapper ]; diff --git a/pkgs/development/interpreters/joker/default.nix b/pkgs/development/interpreters/joker/default.nix index 1342d6c34d2e96fb3334bf47901e549e5be939e6..21a7cfba4064a325bf99d7fb89c28868dbe5fa83 100644 --- a/pkgs/development/interpreters/joker/default.nix +++ b/pkgs/development/interpreters/joker/default.nix @@ -2,7 +2,7 @@ buildGoPackage rec { name = "joker-${version}"; - version = "0.9.7"; + version = "0.10.1"; goPackagePath = "github.com/candid82/joker"; @@ -10,7 +10,7 @@ buildGoPackage rec { rev = "v${version}"; owner = "candid82"; repo = "joker"; - sha256 = "0fl04xdpqmr5xpd4pvj72gdy3v1fr9z6h3ja7dmkama8fw2x4diz"; + sha256 = "1c3p61jmlljljbiwsylmfa75pi00y7yj5wabx1rxmpswc41g5mab"; }; preBuild = "go generate ./..."; diff --git a/pkgs/development/interpreters/joker/deps.nix b/pkgs/development/interpreters/joker/deps.nix index ee99aeab69f8874e589dcaa6998c3ef83d7a0021..4eff988796b3e10d430e6e8cb40fb986a7ba414a 100644 --- a/pkgs/development/interpreters/joker/deps.nix +++ b/pkgs/development/interpreters/joker/deps.nix @@ -8,6 +8,15 @@ sha256 = "1ny3rws671sa9bj5phg6k1rprlgzys73kfdr14vxq4wnwz84zbrc"; }; } + { + goPackagePath = "github.com/pkg/profile"; + fetch = { + type = "git"; + url = "https://github.com/pkg/profile"; + rev = "5b67d428864e92711fcbd2f8629456121a56d91f"; + sha256 = "0blqmvgqvdbqmh3fp9pfdxc9w1qfshrr0zy9whj0sn372bw64qnr"; + }; + } { goPackagePath = "gopkg.in/yaml.v2"; fetch = { diff --git a/pkgs/development/interpreters/jruby/default.nix b/pkgs/development/interpreters/jruby/default.nix index c67fae936ce749f55a2cf03c79662f76fe5770a8..81b71d721b843bae9f52a1ea90929a8aec26841d 100644 --- a/pkgs/development/interpreters/jruby/default.nix +++ b/pkgs/development/interpreters/jruby/default.nix @@ -6,11 +6,11 @@ rubyVersion = callPackage ../ruby/ruby-version.nix {} "2" "3" "3" ""; jruby = stdenv.mkDerivation rec { name = "jruby-${version}"; - version = "9.2.0.0"; + version = "9.2.1.0"; src = fetchurl { url = "https://s3.amazonaws.com/jruby.org/downloads/${version}/jruby-bin-${version}.tar.gz"; - sha256 = "1106s1vmcm36gm3vrl1sjrrr2wj6splgik1zrfb7c2y9bzm8swa2"; + sha256 = "0d98ydiavdr811xsrz9zbw9yjpn0acc2ycakqpfg1vs4n5w7764c"; }; buildInputs = [ makeWrapper ]; diff --git a/pkgs/development/interpreters/maude/default.nix b/pkgs/development/interpreters/maude/default.nix index 9ead7176d4ed3614af5e94d5a284b57037edccff..30013946886b2d274d24f1fd21a8116a2d7b9e48 100644 --- a/pkgs/development/interpreters/maude/default.nix +++ b/pkgs/development/interpreters/maude/default.nix @@ -46,6 +46,11 @@ stdenv.mkDerivation rec { install -D -m 444 full-maude.maude $out/share/maude/full-maude.maude ''; + # bison -dv surface.yy -o surface.c + # mv surface.c surface.cc + # mv: cannot stat 'surface.c': No such file or directory + enableParallelBuilding = false; + meta = { homepage = http://maude.cs.illinois.edu/; description = "High-level specification language"; diff --git a/pkgs/development/interpreters/perl/default.nix b/pkgs/development/interpreters/perl/default.nix index 42cc2a518d62cc006d03546530bd02a1f22adb87..8d21d92ef430f463cfbd48d53dec87bbffc9e021 100644 --- a/pkgs/development/interpreters/perl/default.nix +++ b/pkgs/development/interpreters/perl/default.nix @@ -186,7 +186,7 @@ in rec { # the latest Devel version perldevel = common { - version = "5.29.3"; - sha256 = "054xi629408p2hv9475jghv6zd1bj69qqpiby8cy9qw5vismgi17"; + version = "5.29.4"; + sha256 = "153r0f6jdqrl7hxrvhfivf5g8ivhbvggfhg841q3hi3db5rc86k4"; }; } diff --git a/pkgs/development/interpreters/python/cpython/3.4/default.nix b/pkgs/development/interpreters/python/cpython/3.4/default.nix deleted file mode 100644 index 18b90cd1da46ba4a651106731b31a58c13103b9d..0000000000000000000000000000000000000000 --- a/pkgs/development/interpreters/python/cpython/3.4/default.nix +++ /dev/null @@ -1,214 +0,0 @@ -{ stdenv, fetchurl, fetchpatch -, bzip2 -, expat -, libffi -, gdbm -, lzma -, ncurses -, openssl -, readline -, sqlite -, tcl ? null, tk ? null, tix ? null, libX11 ? null, xproto ? null, x11Support ? false -, zlib -, callPackage -, self -, CF, configd -, python-setup-hook -# For the Python package set -, packageOverrides ? (self: super: {}) -}: - -assert x11Support -> tcl != null - && tk != null - && xproto != null - && libX11 != null; - -with stdenv.lib; - -let - majorVersion = "3.4"; - minorVersion = "9"; - minorVersionSuffix = ""; - version = "${majorVersion}.${minorVersion}${minorVersionSuffix}"; - libPrefix = "python${majorVersion}"; - sitePackages = "lib/${libPrefix}/site-packages"; - - buildInputs = filter (p: p != null) [ - zlib bzip2 expat lzma libffi gdbm sqlite readline ncurses openssl ] - ++ optionals x11Support [ tcl tk libX11 xproto ] - ++ optionals stdenv.isDarwin [ CF configd ]; - - hasDistutilsCxxPatch = !(stdenv.cc.isGNU or false); - -in stdenv.mkDerivation { - name = "python3-${version}"; - pythonVersion = majorVersion; - inherit majorVersion version; - - inherit buildInputs; - - src = fetchurl { - url = "http://www.python.org/ftp/python/${version}/Python-${version}.tar.xz"; - sha256 = "1n9b1kavmw8b7rc3gkrka4fjzrbfq9iqy791yncaf09bp9v9cqjr"; - }; - - NIX_LDFLAGS = optionalString stdenv.isLinux "-lgcc_s"; - - # Determinism: The interpreter is patched to write null timestamps when compiling python files. - # This way python doesn't try to update them when we freeze timestamps in nix store. - DETERMINISTIC_BUILD=1; - # Determinism: We fix the hashes of str, bytes and datetime objects. - PYTHONHASHSEED=0; - - prePatch = optionalString stdenv.isDarwin '' - substituteInPlace configure --replace '`/usr/bin/arch`' '"i386"' - substituteInPlace configure --replace '-Wl,-stack_size,1000000' ' ' - ''; - - patches = [ - ./no-ldconfig.patch - ./ld_library_path.patch - ] ++ optionals (x11Support && stdenv.isDarwin) [ - ./use-correct-tcl-tk-on-darwin.patch - ] ++ optionals hasDistutilsCxxPatch [ - # Fix for http://bugs.python.org/issue1222585 - # Upstream distutils is calling C compiler to compile C++ code, which - # only works for GCC and Apple Clang. This makes distutils to call C++ - # compiler when needed. - (fetchpatch { - url = "https://bugs.python.org/file47046/python-3.x-distutils-C++.patch"; - sha256 = "0dgdn9k2kmw4wh90vdnjcrnn97ylxgx7mbn9l87fwz6j501jqvk8"; - extraPrefix = ""; - }) - ]; - - postPatch = '' - # Determinism - substituteInPlace "Lib/py_compile.py" --replace "source_stats['mtime']" "(1 if 'DETERMINISTIC_BUILD' in os.environ else source_stats['mtime'])" - # Determinism. This is done unconditionally - substituteInPlace "Lib/importlib/_bootstrap.py" --replace "source_mtime = int(source_stats['mtime'])" "source_mtime = 1" - '' + optionalString (x11Support && (tix != null)) '' - substituteInPlace "Lib/tkinter/tix.py" --replace "os.environ.get('TIX_LIBRARY')" "os.environ.get('TIX_LIBRARY') or '${tix}/lib'" - '' - # Avoid picking up getentropy() from glibc >= 2.25, as that would break - # on older kernels. http://bugs.python.org/issue29157 - + optionalString stdenv.isLinux '' - substituteInPlace Python/random.c --replace 'defined(HAVE_GETENTROPY)' '0' - cat Python/random.c - ''; - - CPPFLAGS="${concatStringsSep " " (map (p: "-I${getDev p}/include") buildInputs)}"; - LDFLAGS="${concatStringsSep " " (map (p: "-L${getLib p}/lib") buildInputs)}"; - LIBS="${optionalString (!stdenv.isDarwin) "-lcrypt"} ${optionalString (ncurses != null) "-lncurses"}"; - - configureFlags = [ - "--enable-shared" - "--with-threads" - "--without-ensurepip" - "--with-system-expat" - "--with-system-ffi" - ] - # Never even try to use lchmod on linux, - # don't rely on detecting glibc-isms. - ++ optional stdenv.hostPlatform.isLinux "ac_cv_func_lchmod=no"; - - preConfigure = '' - for i in /usr /sw /opt /pkg; do # improve purity - substituteInPlace ./setup.py --replace $i /no-such-path - done - ${optionalString stdenv.isDarwin '' - export NIX_CFLAGS_COMPILE="$NIX_CFLAGS_COMPILE -msse2" - export MACOSX_DEPLOYMENT_TARGET=10.6 - '' - + optionalString stdenv.hostPlatform.isMusl '' - export NIX_CFLAGS_COMPILE+=" -DTHREAD_STACK_SIZE=0x100000" - ''} - ''; - - setupHook = python-setup-hook sitePackages; - - postInstall = '' - # needed for some packages, especially packages that backport functionality - # to 2.x from 3.x - for item in $out/lib/python${majorVersion}/test/*; do - if [[ "$item" != */test_support.py* - && "$item" != */test/support - && "$item" != */test/libregrtest - && "$item" != */test/regrtest.py* ]]; then - rm -rf "$item" - else - echo $item - fi - done - touch $out/lib/python${majorVersion}/test/__init__.py - - ln -s "$out/include/python${majorVersion}m" "$out/include/python${majorVersion}" - paxmark E $out/bin/python${majorVersion} - - # Python on Nix is not manylinux1 compatible. https://github.com/NixOS/nixpkgs/issues/18484 - echo "manylinux1_compatible=False" >> $out/lib/${libPrefix}/_manylinux.py - - # Determinism: Windows installers were not deterministic. - # We're also not interested in building Windows installers. - find "$out" -name 'wininst*.exe' | xargs -r rm -f - - # Use Python3 as default python - ln -s "$out/bin/idle3" "$out/bin/idle" - ln -s "$out/bin/pydoc3" "$out/bin/pydoc" - ln -s "$out/bin/python3" "$out/bin/python" - ln -s "$out/bin/python3-config" "$out/bin/python-config" - ln -s "$out/lib/pkgconfig/python3.pc" "$out/lib/pkgconfig/python.pc" - - # Get rid of retained dependencies on -dev packages, and remove - # some $TMPDIR references to improve binary reproducibility. - # Note that the .pyc file of _sysconfigdata.py should be regenerated! - for i in $out/lib/python${majorVersion}/_sysconfigdata.py $out/lib/python${majorVersion}/config-${majorVersion}m/Makefile; do - sed -i $i -e "s|-I/nix/store/[^ ']*||g" -e "s|-L/nix/store/[^ ']*||g" -e "s|$TMPDIR|/no-such-path|g" - done - - # Determinism: rebuild all bytecode - # We exclude lib2to3 because that's Python 2 code which fails - # We rebuild three times, once for each optimization level - find $out -name "*.py" | $out/bin/python -m compileall -q -f -x "lib2to3" -i - - find $out -name "*.py" | $out/bin/python -O -m compileall -q -f -x "lib2to3" -i - - find $out -name "*.py" | $out/bin/python -OO -m compileall -q -f -x "lib2to3" -i - - ''; - - passthru = let - pythonPackages = callPackage ../../../../../top-level/python-packages.nix { - python = self; - overrides = packageOverrides; - }; - in rec { - inherit libPrefix sitePackages x11Support hasDistutilsCxxPatch; - executable = "${libPrefix}m"; - buildEnv = callPackage ../../wrapper.nix { python = self; inherit (pythonPackages) requiredPythonModules; }; - withPackages = import ../../with-packages.nix { inherit buildEnv pythonPackages;}; - pkgs = pythonPackages; - isPy3 = true; - isPy34 = true; - is_py3k = true; # deprecated - interpreter = "${self}/bin/${executable}"; - }; - - enableParallelBuilding = true; - - doCheck = false; # expensive, and fails - - meta = { - homepage = http://python.org; - description = "A high-level dynamically-typed programming language"; - longDescription = '' - Python is a remarkably powerful dynamic programming language that - is used in a wide variety of application domains. Some of its key - distinguishing features include: clear, readable syntax; strong - introspection capabilities; intuitive object orientation; natural - expression of procedural code; full modularity, supporting - hierarchical packages; exception-based error handling; and very - high level dynamic data types. - ''; - license = licenses.psfl; - platforms = with platforms; linux ++ darwin; - maintainers = with maintainers; [ fridh ]; - }; -} diff --git a/pkgs/development/interpreters/python/cpython/3.4/ld_library_path.patch b/pkgs/development/interpreters/python/cpython/3.4/ld_library_path.patch deleted file mode 100644 index 3172eb6d18e4bf0c84a4132901fb9aa9cc9fb10a..0000000000000000000000000000000000000000 --- a/pkgs/development/interpreters/python/cpython/3.4/ld_library_path.patch +++ /dev/null @@ -1,51 +0,0 @@ -From 85991e0d7f0e631240f3f6233bd65d1128a66dec Mon Sep 17 00:00:00 2001 -From: Frederik Rietdijk -Date: Thu, 14 Sep 2017 10:00:31 +0200 -Subject: [PATCH] ctypes.util: support LD_LIBRARY_PATH - -Backports support for LD_LIBRARY_PATH from 3.6 ---- - Lib/ctypes/util.py | 26 +++++++++++++++++++++++++- - 1 file changed, 25 insertions(+), 1 deletion(-) - -diff --git a/Lib/ctypes/util.py b/Lib/ctypes/util.py -index 780cd5d21b..d7ac15070f 100644 ---- a/Lib/ctypes/util.py -+++ b/Lib/ctypes/util.py -@@ -181,8 +181,32 @@ elif os.name == "posix": - def _findSoname_ldconfig(name): - return None - -+ def _findLib_ld(name): -+ # See issue #9998 for why this is needed -+ expr = r'[^\(\)\s]*lib%s\.[^\(\)\s]*' % re.escape(name) -+ cmd = ['ld', '-t'] -+ libpath = os.environ.get('LD_LIBRARY_PATH') -+ if libpath: -+ for d in libpath.split(':'): -+ cmd.extend(['-L', d]) -+ cmd.extend(['-o', os.devnull, '-l%s' % name]) -+ result = None -+ try: -+ p = subprocess.Popen(cmd, stdout=subprocess.PIPE, -+ stderr=subprocess.PIPE, -+ universal_newlines=True) -+ out, _ = p.communicate() -+ res = re.search(expr, os.fsdecode(out)) -+ if res: -+ result = res.group(0) -+ except Exception as e: -+ pass # result will be None -+ return result -+ - def find_library(name): -- return _findSoname_ldconfig(name) or _get_soname(_findLib_gcc(name)) -+ # See issue #9998 -+ return _findSoname_ldconfig(name) or \ -+ _get_soname(_findLib_gcc(name) or _findLib_ld(name)) - - ################################################################ - # test code --- -2.14.1 - diff --git a/pkgs/development/interpreters/python/cpython/3.4/no-ldconfig.patch b/pkgs/development/interpreters/python/cpython/3.4/no-ldconfig.patch deleted file mode 100644 index 3cb77a10725494abbcbdf5024393c7603e22ebd2..0000000000000000000000000000000000000000 --- a/pkgs/development/interpreters/python/cpython/3.4/no-ldconfig.patch +++ /dev/null @@ -1,147 +0,0 @@ -From 81bd99ad9058feb1d0361bc8862e8567c21a6142 Mon Sep 17 00:00:00 2001 -From: Frederik Rietdijk -Date: Mon, 28 Aug 2017 09:24:06 +0200 -Subject: [PATCH] Don't use ldconfig and speed up uuid load - ---- - Lib/ctypes/util.py | 52 ++-------------------------------------------------- - Lib/uuid.py | 50 ++------------------------------------------------ - 2 files changed, 4 insertions(+), 98 deletions(-) - -diff --git a/Lib/ctypes/util.py b/Lib/ctypes/util.py -index 595113bffd..780cd5d21b 100644 ---- a/Lib/ctypes/util.py -+++ b/Lib/ctypes/util.py -@@ -88,28 +88,7 @@ elif os.name == "posix": - import re, tempfile - - def _findLib_gcc(name): -- expr = r'[^\(\)\s]*lib%s\.[^\(\)\s]*' % re.escape(name) -- fdout, ccout = tempfile.mkstemp() -- os.close(fdout) -- cmd = 'if type gcc >/dev/null 2>&1; then CC=gcc; elif type cc >/dev/null 2>&1; then CC=cc;else exit 10; fi;' \ -- 'LANG=C LC_ALL=C $CC -Wl,-t -o ' + ccout + ' 2>&1 -l' + name -- try: -- f = os.popen(cmd) -- try: -- trace = f.read() -- finally: -- rv = f.close() -- finally: -- try: -- os.unlink(ccout) -- except FileNotFoundError: -- pass -- if rv == 10: -- raise OSError('gcc or cc command not found') -- res = re.search(expr, trace) -- if not res: -- return None -- return res.group(0) -+ return None - - - if sys.platform == "sunos5": -@@ -200,34 +179,7 @@ elif os.name == "posix": - else: - - def _findSoname_ldconfig(name): -- import struct -- if struct.calcsize('l') == 4: -- machine = os.uname().machine + '-32' -- else: -- machine = os.uname().machine + '-64' -- mach_map = { -- 'x86_64-64': 'libc6,x86-64', -- 'ppc64-64': 'libc6,64bit', -- 'sparc64-64': 'libc6,64bit', -- 's390x-64': 'libc6,64bit', -- 'ia64-64': 'libc6,IA-64', -- } -- abi_type = mach_map.get(machine, 'libc6') -- -- # XXX assuming GLIBC's ldconfig (with option -p) -- regex = os.fsencode( -- '\s+(lib%s\.[^\s]+)\s+\(%s' % (re.escape(name), abi_type)) -- try: -- with subprocess.Popen(['/sbin/ldconfig', '-p'], -- stdin=subprocess.DEVNULL, -- stderr=subprocess.DEVNULL, -- stdout=subprocess.PIPE, -- env={'LC_ALL': 'C', 'LANG': 'C'}) as p: -- res = re.search(regex, p.stdout.read()) -- if res: -- return os.fsdecode(res.group(1)) -- except OSError: -- pass -+ return None - - def find_library(name): - return _findSoname_ldconfig(name) or _get_soname(_findLib_gcc(name)) -diff --git a/Lib/uuid.py b/Lib/uuid.py -index 1061bffc43..846f5819f5 100644 ---- a/Lib/uuid.py -+++ b/Lib/uuid.py -@@ -451,57 +451,11 @@ def _netbios_getnode(): - return ((bytes[0]<<40) + (bytes[1]<<32) + (bytes[2]<<24) + - (bytes[3]<<16) + (bytes[4]<<8) + bytes[5]) - --# Thanks to Thomas Heller for ctypes and for his help with its use here. - --# If ctypes is available, use it to find system routines for UUID generation. --# XXX This makes the module non-thread-safe! - _uuid_generate_random = _uuid_generate_time = _UuidCreate = None --try: -- import ctypes, ctypes.util - -- # The uuid_generate_* routines are provided by libuuid on at least -- # Linux and FreeBSD, and provided by libc on Mac OS X. -- for libname in ['uuid', 'c']: -- try: -- lib = ctypes.CDLL(ctypes.util.find_library(libname)) -- except: -- continue -- if hasattr(lib, 'uuid_generate_random'): -- _uuid_generate_random = lib.uuid_generate_random -- if hasattr(lib, 'uuid_generate_time'): -- _uuid_generate_time = lib.uuid_generate_time -- if _uuid_generate_random is not None: -- break # found everything we were looking for -- -- # The uuid_generate_* functions are broken on MacOS X 10.5, as noted -- # in issue #8621 the function generates the same sequence of values -- # in the parent process and all children created using fork (unless -- # those children use exec as well). -- # -- # Assume that the uuid_generate functions are broken from 10.5 onward, -- # the test can be adjusted when a later version is fixed. -- import sys -- if sys.platform == 'darwin': -- import os -- if int(os.uname().release.split('.')[0]) >= 9: -- _uuid_generate_random = _uuid_generate_time = None -- -- # On Windows prior to 2000, UuidCreate gives a UUID containing the -- # hardware address. On Windows 2000 and later, UuidCreate makes a -- # random UUID and UuidCreateSequential gives a UUID containing the -- # hardware address. These routines are provided by the RPC runtime. -- # NOTE: at least on Tim's WinXP Pro SP2 desktop box, while the last -- # 6 bytes returned by UuidCreateSequential are fixed, they don't appear -- # to bear any relationship to the MAC address of any network device -- # on the box. -- try: -- lib = ctypes.windll.rpcrt4 -- except: -- lib = None -- _UuidCreate = getattr(lib, 'UuidCreateSequential', -- getattr(lib, 'UuidCreate', None)) --except: -- pass -+_uuid_generate_time = _UuidCreate = None -+ - - def _unixdll_getnode(): - """Get the hardware address on Unix using ctypes.""" --- -2.14.1 - diff --git a/pkgs/development/interpreters/python/cpython/3.4/use-correct-tcl-tk-on-darwin.patch b/pkgs/development/interpreters/python/cpython/3.4/use-correct-tcl-tk-on-darwin.patch deleted file mode 100644 index b73f62b97ec502a8d2d94bd56b9bbbc9551acfe8..0000000000000000000000000000000000000000 --- a/pkgs/development/interpreters/python/cpython/3.4/use-correct-tcl-tk-on-darwin.patch +++ /dev/null @@ -1,48 +0,0 @@ -diff --git a/setup.py b/setup.py -index 2779658..902d0eb 100644 ---- a/setup.py -+++ b/setup.py -@@ -1699,9 +1699,6 @@ class PyBuildExt(build_ext): - # Rather than complicate the code below, detecting and building - # AquaTk is a separate method. Only one Tkinter will be built on - # Darwin - either AquaTk, if it is found, or X11 based Tk. -- if (host_platform == 'darwin' and -- self.detect_tkinter_darwin(inc_dirs, lib_dirs)): -- return - - # Assume we haven't found any of the libraries or include files - # The versions with dots are used on Unix, and the versions without -@@ -1747,22 +1744,6 @@ class PyBuildExt(build_ext): - if dir not in include_dirs: - include_dirs.append(dir) - -- # Check for various platform-specific directories -- if host_platform == 'sunos5': -- include_dirs.append('/usr/openwin/include') -- added_lib_dirs.append('/usr/openwin/lib') -- elif os.path.exists('/usr/X11R6/include'): -- include_dirs.append('/usr/X11R6/include') -- added_lib_dirs.append('/usr/X11R6/lib64') -- added_lib_dirs.append('/usr/X11R6/lib') -- elif os.path.exists('/usr/X11R5/include'): -- include_dirs.append('/usr/X11R5/include') -- added_lib_dirs.append('/usr/X11R5/lib') -- else: -- # Assume default location for X11 -- include_dirs.append('/usr/X11/include') -- added_lib_dirs.append('/usr/X11/lib') -- - # If Cygwin, then verify that X is installed before proceeding - if host_platform == 'cygwin': - x11_inc = find_file('X11/Xlib.h', [], include_dirs) -@@ -1786,10 +1767,6 @@ class PyBuildExt(build_ext): - if host_platform in ['aix3', 'aix4']: - libs.append('ld') - -- # Finally, link with the X11 libraries (not appropriate on cygwin) -- if host_platform != "cygwin": -- libs.append('X11') -- - ext = Extension('_tkinter', ['_tkinter.c', 'tkappinit.c'], - define_macros=[('WITH_APPINIT', 1)] + defs, - include_dirs = include_dirs, diff --git a/pkgs/development/libraries/SDL/default.nix b/pkgs/development/libraries/SDL/default.nix index 7bbb1a5e1c92e54bbf1e5583aadf9bd861c90161..7ef3c4c89686f6d638b612cff0735949713562a7 100644 --- a/pkgs/development/libraries/SDL/default.nix +++ b/pkgs/development/libraries/SDL/default.nix @@ -1,15 +1,16 @@ -{ stdenv, lib, fetchurl, fetchpatch, pkgconfig, audiofile, libcap, libiconv -, openglSupport ? false, libGL, libGLU -, alsaSupport ? true, alsaLib -, x11Support ? stdenv.hostPlatform == stdenv.buildPlatform, libXext, libICE, libXrandr -, pulseaudioSupport ? true, libpulseaudio +{ stdenv, config, libGLSupported, fetchurl, fetchpatch, pkgconfig, audiofile, libcap, libiconv +, openglSupport ? libGLSupported, libGL, libGLU +, alsaSupport ? stdenv.isLinux, alsaLib +, x11Support ? !stdenv.isCygwin, libXext, libICE, libXrandr +, pulseaudioSupport ? config.pulseaudio or stdenv.isLinux, libpulseaudio , OpenGL, CoreAudio, CoreServices, AudioUnit, Kernel, Cocoa +, cf-private }: # NOTE: When editing this expression see if the same change applies to # SDL2 expression too -with lib; +with stdenv.lib; assert !stdenv.isDarwin -> alsaSupport || pulseaudioSupport; assert openglSupport -> (stdenv.isDarwin || x11Support && libGL != null && libGLU != null); @@ -41,7 +42,11 @@ stdenv.mkDerivation rec { buildInputs = [ ] ++ optional (!stdenv.hostPlatform.isMinGW) audiofile - ++ optionals stdenv.isDarwin [ AudioUnit CoreAudio CoreServices Kernel OpenGL ]; + ++ optionals stdenv.isDarwin [ + AudioUnit CoreAudio CoreServices Kernel OpenGL + # Needed for NSDefaultRunLoopMode symbols. + cf-private + ]; configureFlags = [ "--disable-oss" @@ -109,7 +114,7 @@ stdenv.mkDerivation rec { postFixup = '' for lib in $out/lib/*.so* ; do if [[ -L "$lib" ]]; then - patchelf --set-rpath "$(patchelf --print-rpath $lib):${lib.makeLibraryPath propagatedBuildInputs}" "$lib" + patchelf --set-rpath "$(patchelf --print-rpath $lib):${makeLibraryPath propagatedBuildInputs}" "$lib" fi done ''; diff --git a/pkgs/development/libraries/SDL2/default.nix b/pkgs/development/libraries/SDL2/default.nix index 7d8f5b2caee659c0ab0b85993dc1f07fe5618e82..07a63a366f1b08c6b711a61f07001528a208760e 100644 --- a/pkgs/development/libraries/SDL2/default.nix +++ b/pkgs/development/libraries/SDL2/default.nix @@ -1,31 +1,31 @@ -{ stdenv, lib, fetchurl, pkgconfig, pruneLibtoolFiles -, openglSupport ? false, libGL -, alsaSupport ? true, alsaLib -, x11Support ? true, libX11, xproto, libICE, libXi, libXScrnSaver, libXcursor, libXinerama, libXext, libXxf86vm, libXrandr -, waylandSupport ? true, wayland, wayland-protocols, libxkbcommon -, dbusSupport ? false, dbus +{ stdenv, config, libGLSupported, fetchurl, pkgconfig, pruneLibtoolFiles +, openglSupport ? libGLSupported, libGL +, alsaSupport ? stdenv.isLinux, alsaLib +, x11Support ? !stdenv.isCygwin, libX11, xproto, libICE, libXi, libXScrnSaver, libXcursor, libXinerama, libXext, libXxf86vm, libXrandr +, waylandSupport ? stdenv.isLinux, wayland, wayland-protocols, libxkbcommon +, dbusSupport ? stdenv.isLinux, dbus , udevSupport ? false, udev , ibusSupport ? false, ibus -, pulseaudioSupport ? true, libpulseaudio +, pulseaudioSupport ? config.pulseaudio or stdenv.isLinux, libpulseaudio , AudioUnit, Cocoa, CoreAudio, CoreServices, ForceFeedback, OpenGL -, audiofile, libiconv +, audiofile, cf-private, libiconv }: # NOTE: When editing this expression see if the same change applies to # SDL expression too -with lib; +with stdenv.lib; assert !stdenv.isDarwin -> alsaSupport || pulseaudioSupport; assert openglSupport -> (stdenv.isDarwin || x11Support && libGL != null); stdenv.mkDerivation rec { name = "SDL2-${version}"; - version = "2.0.8"; + version = "2.0.9"; src = fetchurl { url = "https://www.libsdl.org/release/${name}.tar.gz"; - sha256 = "1v4js1gkr75hzbxzhwzzif0sf9g07234sd23x1vdaqc661bprizd"; + sha256 = "1c94ndagzkdfqaa838yqg589p1nnqln8mv0hpwfhrkbfczf8cl95"; }; outputs = [ "out" "dev" ]; @@ -54,7 +54,11 @@ stdenv.mkDerivation rec { buildInputs = [ audiofile libiconv ] ++ dlopenBuildInputs ++ optional ibusSupport ibus - ++ optionals stdenv.isDarwin [ AudioUnit Cocoa CoreAudio CoreServices ForceFeedback OpenGL ]; + ++ optionals stdenv.isDarwin [ + AudioUnit Cocoa CoreAudio CoreServices ForceFeedback OpenGL + # Needed for NSDefaultRunLoopMode symbols. + cf-private + ]; # /build/SDL2-2.0.7/src/video/wayland/SDL_waylandevents.c:41:10: fatal error: # pointer-constraints-unstable-v1-client-protocol.h: No such file or directory diff --git a/pkgs/development/libraries/SDL2_image/default.nix b/pkgs/development/libraries/SDL2_image/default.nix index 17a2dd14b272fa3b5dc3d43f430dca54ee036caa..5ab4a0dc6c7fb8c2f09230f9257e16a29281b772 100644 --- a/pkgs/development/libraries/SDL2_image/default.nix +++ b/pkgs/development/libraries/SDL2_image/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { name = "SDL2_image-${version}"; - version = "2.0.3"; + version = "2.0.4"; src = fetchurl { url = "https://www.libsdl.org/projects/SDL_image/release/${name}.tar.gz"; - sha256 = "0s13dmakn21q6yw8avl67d4zkxzl1wap6l5nwf6cvzrmlxfw441m"; + sha256 = "1b6f7002bm007y3zpyxb5r6ag0lml51jyvx1pwpj9sq24jfc8kp7"; }; buildInputs = [ SDL2 libpng libjpeg libtiff libungif libXpm zlib ] diff --git a/pkgs/development/libraries/SDL2_mixer/default.nix b/pkgs/development/libraries/SDL2_mixer/default.nix index 3819aeb3c316c1f2d08c9971403035ea01cb74be..61e15d621bcd5c2af6d7f861d91b86131ec0e398 100644 --- a/pkgs/development/libraries/SDL2_mixer/default.nix +++ b/pkgs/development/libraries/SDL2_mixer/default.nix @@ -5,11 +5,11 @@ stdenv.mkDerivation rec { name = "SDL2_mixer-${version}"; - version = "2.0.2"; + version = "2.0.4"; src = fetchurl { url = "https://www.libsdl.org/projects/SDL_mixer/release/${name}.tar.gz"; - sha256 = "1fw3kkqi5346ai5if4pxrcbhs5c4vv3a4smgz6fl6kyaxwkmwqaf"; + sha256 = "0694vsz5bjkcdgfdra6x9fq8vpzrl8m6q96gh58df7065hw5mkxl"; }; preAutoreconf = '' diff --git a/pkgs/development/libraries/SDL_sound/default.nix b/pkgs/development/libraries/SDL_sound/default.nix index 2a009a3b7104a0ff4d6f6ee803469081a1fa6021..0e717c53035732fccf95c69304f0989ef88db58a 100644 --- a/pkgs/development/libraries/SDL_sound/default.nix +++ b/pkgs/development/libraries/SDL_sound/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchurl, SDL, libvorbis, flac, libmikmod }: +{ stdenv, lib, fetchurl, SDL, libvorbis, flac, libmikmod }: stdenv.mkDerivation rec { name = "SDL_sound-${version}"; @@ -11,9 +11,11 @@ stdenv.mkDerivation rec { buildInputs = [ SDL libvorbis flac libmikmod ]; - meta = with stdenv.lib; { + configureFlags = lib.optional stdenv.isDarwin "--disable-sdltest"; + + meta = with lib; { description = "SDL sound library"; - platforms = platforms.linux; + platforms = platforms.unix; license = licenses.lgpl21; homepage = https://www.icculus.org/SDL_sound/; }; diff --git a/pkgs/development/libraries/appstream-glib/default.nix b/pkgs/development/libraries/appstream-glib/default.nix index 2aacfd07364fcefffa72618a4b0c5d538d8f4948..831d0cc0f71317bcbcdb764775669df4b3efdf4c 100644 --- a/pkgs/development/libraries/appstream-glib/default.nix +++ b/pkgs/development/libraries/appstream-glib/default.nix @@ -4,7 +4,7 @@ , libuuid, json-glib, meson, gperf, ninja }: stdenv.mkDerivation rec { - name = "appstream-glib-0.7.13"; + name = "appstream-glib-0.7.14"; outputs = [ "out" "dev" "man" "installedTests" ]; outputBin = "dev"; @@ -13,7 +13,7 @@ stdenv.mkDerivation rec { owner = "hughsie"; repo = "appstream-glib"; rev = stdenv.lib.replaceStrings ["." "-"] ["_" "_"] name; - sha256 = "0r1gb806p68axspzwvpn1ygmd6pfc17mncg3i6yazk3n10k5cl06"; + sha256 = "1908ilra1l0m2a224azmj6p4yglzdwwk41rr6rhby959sgw3iaky"; }; nativeBuildInputs = [ diff --git a/pkgs/development/libraries/appstream/default.nix b/pkgs/development/libraries/appstream/default.nix index 5e4218852e5187e9e09001a83d69251443d111cd..19b82fcffa38e69fc0da259a2f6d72c137dc2a96 100644 --- a/pkgs/development/libraries/appstream/default.nix +++ b/pkgs/development/libraries/appstream/default.nix @@ -6,13 +6,13 @@ stdenv.mkDerivation rec { name = "appstream-${version}"; - version = "0.12.2"; + version = "0.12.3"; src = fetchFromGitHub { owner = "ximion"; repo = "appstream"; rev = "APPSTREAM_${stdenv.lib.replaceStrings ["."] ["_"] version}"; - sha256 = "1g15c4bhyl730rgaiqia3jppraixh05c3yx098lyilidbddxp5xb"; + sha256 = "154yfn10vm5v7vwa2jz60bgpcznzm3nkjg31g92rm9b39rd2y1ja"; }; nativeBuildInputs = [ diff --git a/pkgs/development/libraries/argp-standalone/default.nix b/pkgs/development/libraries/argp-standalone/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..f14c77f666bdfb53d53a70ec7f70409fe7d66a69 --- /dev/null +++ b/pkgs/development/libraries/argp-standalone/default.nix @@ -0,0 +1,41 @@ +{ stdenv, fetchurl, fetchpatch }: + +stdenv.mkDerivation rec { + name = "argp-standalone-1.3"; + + src = fetchurl { + url = "https://www.lysator.liu.se/~nisse/misc/argp-standalone-1.3.tar.gz"; + sha256 = "dec79694da1319acd2238ce95df57f3680fea2482096e483323fddf3d818d8be"; + }; + + patches = [ + (if stdenv.hostPlatform.isDarwin then + fetchpatch { + name = "patch-argp-fmtstream.h"; + url = "https://raw.githubusercontent.com/Homebrew/formula-patches/b5f0ad3/argp-standalone/patch-argp-fmtstream.h"; + sha256 = "5656273f622fdb7ca7cf1f98c0c9529bed461d23718bc2a6a85986e4f8ed1cb8"; + } + else null) + ]; + + patchFlags = "-p0"; + + postInstall = + '' + mkdir -p $out/lib $out/include + cp libargp.a $out/lib + cp argp.h $out/include + ''; + + doCheck = true; + + enableParallelBuilding = true; + + meta = with stdenv.lib; { + homepage = "https://www.lysator.liu.se/~nisse/misc/"; + description = "Standalone version of arguments parsing functions from GLIBC"; + platforms = platforms.darwin; + maintainers = with maintainers; [ amar1729 ]; + license = stdenv.lib.licenses.gpl2; + }; +} diff --git a/pkgs/development/libraries/armadillo/default.nix b/pkgs/development/libraries/armadillo/default.nix index 16ba6b32382a23e6da27d511d1baea3257787727..7685a0d9eb4f18f65c1ce1ba25df2b9b88236389 100644 --- a/pkgs/development/libraries/armadillo/default.nix +++ b/pkgs/development/libraries/armadillo/default.nix @@ -1,12 +1,12 @@ { stdenv, fetchurl, cmake, openblasCompat, superlu, hdf5 }: stdenv.mkDerivation rec { - version = "9.100.5"; + version = "9.200.4"; name = "armadillo-${version}"; src = fetchurl { url = "mirror://sourceforge/arma/armadillo-${version}.tar.xz"; - sha256 = "1ka1vd9fcmvp12qkcm4888dkfqwnalvv00x04wy29f3nx3qwczby"; + sha256 = "0rkry405vacvlvkc7xdkzh20zf7yni9hsp65v0dby91na0wcrl8h"; }; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/development/libraries/babl/default.nix b/pkgs/development/libraries/babl/default.nix index 027b86a977476f7f72bb85693eda5f993a03d268..4c942cac3f699994ceab59ee396dfec5331301ef 100644 --- a/pkgs/development/libraries/babl/default.nix +++ b/pkgs/development/libraries/babl/default.nix @@ -1,11 +1,11 @@ { stdenv, fetchurl }: stdenv.mkDerivation rec { - name = "babl-0.1.58"; + name = "babl-0.1.60"; src = fetchurl { url = "https://ftp.gtk.org/pub/babl/0.1/${name}.tar.bz2"; - sha256 = "0mgdii9v89ay0nra36cz9i0q7cqv8wi8hk01jsc4bf0rc1bsxjbr"; + sha256 = "0kv0y12j4k9khrxqa7rryfb4ikcnrax6x4nwi70wnz05nv6fxld3"; }; doCheck = true; diff --git a/pkgs/development/libraries/bamf/default.nix b/pkgs/development/libraries/bamf/default.nix index 0a2badea7cbfb6e0d3d65675d02f6f371d3c795f..b2c7bf5d64491dc6dc0c18f0ac97f147d4ac5ad2 100644 --- a/pkgs/development/libraries/bamf/default.nix +++ b/pkgs/development/libraries/bamf/default.nix @@ -1,54 +1,67 @@ -{ stdenv, fetchurl, libgtop, libwnck3, glib, vala, pkgconfig -, libstartup_notification, gobjectIntrospection, gtk-doc +{ stdenv, autoconf, automake, libtool, gnome3, which, fetchgit, libgtop, libwnck3, glib, vala, pkgconfig +, libstartup_notification, gobjectIntrospection, gtk-doc, docbook_xsl , xorgserver, dbus, python2 }: stdenv.mkDerivation rec { - pname = "bamf"; - version = "0.5.3"; - name = "${pname}-${version}"; + name = "bamf-${version}"; + version = "0.5.4"; outputs = [ "out" "dev" "devdoc" ]; - src = fetchurl { - url = "https://launchpad.net/${pname}/0.5/${version}/+download/${name}.tar.gz"; - sha256 = "051vib8ndp09ph5bfwkgmzda94varzjafwxf6lqx7z1s8rd7n39l"; + src = fetchgit { + url = https://git.launchpad.net/~unity-team/bamf; + rev = version; + sha256 = "1klvij1wyhdj5d8sr3b16pfixc1yk8ihglpjykg7zrr1f50jfgsz"; }; nativeBuildInputs = [ - pkgconfig - gtk-doc + autoconf + automake + docbook_xsl + gnome3.gnome-common gobjectIntrospection + gtk-doc + libtool + pkgconfig vala + which # Tests - xorgserver + python2 + python2.pkgs.libxslt + python2.pkgs.libxml2 dbus - (python2.withPackages (pkgs: with pkgs; [ libxslt libxml2 ])) + xorgserver ]; buildInputs = [ + glib libgtop - libwnck3 libstartup_notification - glib + libwnck3 ]; # Fix hard-coded path # https://bugs.launchpad.net/bamf/+bug/1780557 postPatch = '' - substituteInPlace data/Makefile.in \ + substituteInPlace data/Makefile.am \ --replace '/usr/lib/systemd/user' '@prefix@/lib/systemd/user' ''; configureFlags = [ "--enable-headless-tests" + "--enable-gtk-doc" ]; # fix paths makeFlags = [ - "INTROSPECTION_GIRDIR=$(dev)/share/gir-1.0/" - "INTROSPECTION_TYPELIBDIR=$(out)/lib/girepository-1.0" + "INTROSPECTION_GIRDIR=${placeholder ''dev''}/share/gir-1.0/" + "INTROSPECTION_TYPELIBDIR=${placeholder ''out''}/lib/girepository-1.0" ]; + preConfigure = '' + ./autogen.sh + ''; + # TODO: Requires /etc/machine-id doCheck = false; diff --git a/pkgs/development/libraries/caf/default.nix b/pkgs/development/libraries/caf/default.nix index 09c1560d6f603d4a682546466cb7e4b99f801caa..f1cad37d438fd2ad752ecda2551baf1ac118c609 100644 --- a/pkgs/development/libraries/caf/default.nix +++ b/pkgs/development/libraries/caf/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { name = "actor-framework-${version}"; - version = "0.16.0"; + version = "0.16.2"; src = fetchFromGitHub { owner = "actor-framework"; repo = "actor-framework"; rev = "${version}"; - sha256 = "01i6sclxwa7k91ngi7jw9vlss8wjpv1hz4y5934jq0lx8hdf7s02"; + sha256 = "0sdr9mrrkrj9nfwqbznz3pkqfsnsi8kanfy99x01js1spqihy1s3"; }; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/development/libraries/catch/default.nix b/pkgs/development/libraries/catch/default.nix index 116216d500e25367f999e619c03e1c26872ed5ee..d83060fc24d8c5dd0d7e1d70de27dd407133a68f 100644 --- a/pkgs/development/libraries/catch/default.nix +++ b/pkgs/development/libraries/catch/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { name = "catch-${version}"; - version = "1.12.0"; + version = "1.12.2"; src = fetchFromGitHub { owner = "catchorg"; repo = "Catch"; rev = "v${version}"; - sha256 = "0hkcmycvyyazzi9dywnyiipnmbx399iirh5xk5g957c8zl0505kd"; + sha256 = "1gdp5wm8khn02g2miz381llw3191k7309qj8s3jd6sasj01rhf23"; }; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/development/libraries/catch2/default.nix b/pkgs/development/libraries/catch2/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..073736ce66d90b18e57a547a0a5a3c48ff48e8b4 --- /dev/null +++ b/pkgs/development/libraries/catch2/default.nix @@ -0,0 +1,27 @@ +{ stdenv, fetchFromGitHub, cmake, python }: + +stdenv.mkDerivation rec { + name = "catch2-${version}"; + version = "2.4.2"; + + src = fetchFromGitHub { + owner = "catchorg"; + repo = "Catch2"; + rev = "v${version}"; + sha256="1105bxbvh1xxl4yxjjp6l6w6hgsh8xbdiwlnga9di5y2x92b9bjd"; + }; + + nativeBuildInputs = [ cmake ]; + + cmakeFlags = [ + "-H.." + "-DBUILD_TESTING=OFF"]; + + meta = with stdenv.lib; { + description = "A multi-paradigm automated test framework for C++ and Objective-C (and, maybe, C)"; + homepage = http://catch-lib.net; + license = licenses.boost; + maintainers = with maintainers; [ edwtjo knedlsepp ]; + platforms = with platforms; unix; + }; +} diff --git a/pkgs/development/libraries/clucene-core/2.x.nix b/pkgs/development/libraries/clucene-core/2.x.nix index a14dec370479029c5b94cf2599251b4cf5cfc2d0..004c01a5b69e2f13cdb3aa8c9b8825dea2f88113 100644 --- a/pkgs/development/libraries/clucene-core/2.x.nix +++ b/pkgs/development/libraries/clucene-core/2.x.nix @@ -12,7 +12,11 @@ stdenv.mkDerivation rec { buildInputs = [ boost zlib ]; - cmakeFlags = [ "-DBUILD_CONTRIBS=ON" "-DBUILD_CONTRIBS_LIB=ON" ]; + cmakeFlags = [ + "-DBUILD_CONTRIBS=ON" + "-DBUILD_CONTRIBS_LIB=ON" + "-DCMAKE_BUILD_WITH_INSTALL_NAME_DIR=ON" + ]; patches = # From debian [ ./Fix-pkgconfig-file-by-adding-clucene-shared-library.patch @@ -20,13 +24,9 @@ stdenv.mkDerivation rec { ./Install-contribs-lib.patch ] ++ stdenv.lib.optionals stdenv.isDarwin [ ./fix-darwin.patch ]; - postInstall = stdenv.lib.optionalString stdenv.isDarwin '' - install_name_tool -change libclucene-shared.1.dylib \ - $out/lib/libclucene-shared.1.dylib \ - $out/lib/libclucene-core.1.dylib - ''; - - doCheck = false; # fails with "Unable to find executable: /build/clucene-core-2.3.3.4/build/bin/cl_test" + # fails with "Unable to find executable: + # /build/clucene-core-2.3.3.4/build/bin/cl_test" + doCheck = false; meta = with stdenv.lib; { description = "Core library for full-featured text search engine"; diff --git a/pkgs/development/libraries/cpp-hocon/default.nix b/pkgs/development/libraries/cpp-hocon/default.nix index f08077a9a3cf793866b8b821ee05ba8fd18359e5..c2f3ce9b9b4a0bf33d852032cfc68edcc0b1f1fb 100644 --- a/pkgs/development/libraries/cpp-hocon/default.nix +++ b/pkgs/development/libraries/cpp-hocon/default.nix @@ -2,10 +2,10 @@ stdenv.mkDerivation rec { name = "cpp-hocon-${version}"; - version = "0.2.0"; + version = "0.2.1"; src = fetchFromGitHub { - sha256 = "084vsn080z8mp5s54jaq0qdwlx0p62nbw1i0rffkag477h8vq68i"; + sha256 = "0ar7q3rp46m01wvfa289bxnk9xma3ydc67by7i4nrpz8vamvhwc3"; rev = version; repo = "cpp-hocon"; owner = "puppetlabs"; diff --git a/pkgs/development/libraries/editline/default.nix b/pkgs/development/libraries/editline/default.nix index dc44c7d8705f3a1181940c5b2691792d47b1194e..90e3ee9af5b2ec885d304fb98d1a145dfe660ec9 100644 --- a/pkgs/development/libraries/editline/default.nix +++ b/pkgs/development/libraries/editline/default.nix @@ -12,7 +12,7 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ autoreconfHook ]; - dontDisableStatic = true; + outputs = [ "out" "dev" "man" "doc" ]; meta = with stdenv.lib; { homepage = http://troglobit.com/editline.html; diff --git a/pkgs/development/libraries/ffmpeg/generic.nix b/pkgs/development/libraries/ffmpeg/generic.nix index 7c3b3447d6136f8c892df4810260b878abf9b589..d11ef732a01f6e9b2c9010180e7f2e6c96ad7e05 100644 --- a/pkgs/development/libraries/ffmpeg/generic.nix +++ b/pkgs/development/libraries/ffmpeg/generic.nix @@ -1,6 +1,6 @@ { stdenv, fetchurl, pkgconfig, perl, texinfo, yasm , alsaLib, bzip2, fontconfig, freetype, gnutls, libiconv, lame, libass, libogg -, libssh, libtheora, libva, libvorbis, libvpx, lzma, libpulseaudio, soxr +, libssh, libtheora, libva, libdrm, libvorbis, libvpx, lzma, libpulseaudio, soxr , x264, x265, xvidcore, zlib, libopus, speex , openglSupport ? false, libGLU_combined ? null # Build options @@ -130,6 +130,7 @@ stdenv.mkDerivation rec { "--enable-libtheora" (ifMinVer "2.1" "--enable-libssh") (ifMinVer "0.6" (enableFeature vaapiSupport "vaapi")) + (ifMinVer "3.4" (enableFeature vaapiSupport "libdrm")) "--enable-vdpau" "--enable-libvorbis" (ifMinVer "0.6" (enableFeature vpxSupport "libvpx")) @@ -165,6 +166,7 @@ stdenv.mkDerivation rec { ++ optional vpxSupport libvpx ++ optionals (!isDarwin && !isAarch32) [ libpulseaudio ] # Need to be fixed on Darwin and ARM ++ optional ((isLinux || isFreeBSD) && !isAarch32) libva + ++ optional ((isLinux || isFreeBSD) && !isAarch32) libdrm ++ optional isLinux alsaLib ++ optionals isDarwin darwinFrameworks ++ optional vdpauSupport libvdpau diff --git a/pkgs/development/libraries/fltk/default.nix b/pkgs/development/libraries/fltk/default.nix index 405d80031e37a80df1dc95680006be6c24ebe6f4..b1c798476ead40563d83b07b9750b3fee3129a58 100644 --- a/pkgs/development/libraries/fltk/default.nix +++ b/pkgs/development/libraries/fltk/default.nix @@ -1,6 +1,6 @@ { stdenv, fetchurl, pkgconfig, xlibsWrapper, inputproto, libXi , freeglut, libGLU_combined, libjpeg, zlib, libXft, libpng -, darwin, libtiff, freetype +, libtiff, freetype, cf-private, Cocoa, AGL, GLUT }: let @@ -35,7 +35,7 @@ in stdenv.mkDerivation { propagatedBuildInputs = [ inputproto ] ++ (if stdenv.isDarwin - then (with darwin.apple_sdk.frameworks; [Cocoa AGL GLUT freetype libtiff]) + then [ Cocoa AGL GLUT freetype libtiff cf-private /* Needed for NSDefaultRunLoopMode */ ] else [ xlibsWrapper libXi freeglut ]); enableParallelBuilding = true; diff --git a/pkgs/development/libraries/folly/default.nix b/pkgs/development/libraries/folly/default.nix index 9694765bb93fa306c7bd382f9e225efb8cf79668..1598dafaad059fbd0eb1d82641cfcc8eebc0f267 100644 --- a/pkgs/development/libraries/folly/default.nix +++ b/pkgs/development/libraries/folly/default.nix @@ -1,26 +1,29 @@ -{ stdenv, fetchFromGitHub, autoreconfHook, pkgconfig, boost, libevent -, double-conversion, glog, google-gflags, python, libiberty, openssl }: +{ stdenv, fetchFromGitHub, cmake, boost, libevent, double-conversion, glog +, google-gflags, libiberty, openssl }: stdenv.mkDerivation rec { name = "folly-${version}"; - version = "2018.08.27.00"; + version = "2018.10.29.00"; src = fetchFromGitHub { owner = "facebook"; repo = "folly"; rev = "v${version}"; - sha256 = "0slnhn8q26mj23gm36c61b4ar857q8c844ifpvw4q329nndbrgcz"; + sha256 = "0bbp4w8wbawh3ilgkl7rwvbqkdczpvfn92f9lcvxj8sili0nldab"; }; - nativeBuildInputs = [ autoreconfHook python pkgconfig ]; - buildInputs = [ libiberty boost libevent double-conversion glog google-gflags openssl ]; + nativeBuildInputs = [ cmake ]; - postPatch = "cd folly"; - preBuild = '' - patchShebangs build - ''; - - configureFlags = [ "--with-boost-libdir=${boost.out}/lib" ]; + # See CMake/folly-deps.cmake in the Folly source tree. + buildInputs = [ + boost + double-conversion + glog + google-gflags + libevent + libiberty + openssl + ]; enableParallelBuilding = true; diff --git a/pkgs/development/libraries/freetds/default.nix b/pkgs/development/libraries/freetds/default.nix index 4f07316bd3f19592509d49c295ea37d51af1556b..536859bc4b34a053e3d47e0c14fab84dcb50f5a1 100644 --- a/pkgs/development/libraries/freetds/default.nix +++ b/pkgs/development/libraries/freetds/default.nix @@ -1,6 +1,6 @@ { stdenv, fetchurl, autoreconfHook, pkgconfig , openssl -, odbcSupport ? false, unixODBC ? null }: +, odbcSupport ? true, unixODBC ? null }: assert odbcSupport -> unixODBC != null; diff --git a/pkgs/development/libraries/fstrcmp/default.nix b/pkgs/development/libraries/fstrcmp/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..68f3c9d0ee5949e74e2513702b621df1734b921d --- /dev/null +++ b/pkgs/development/libraries/fstrcmp/default.nix @@ -0,0 +1,31 @@ +{ stdenv, fetchzip, libtool, ghostscript, groff }: + +stdenv.mkDerivation rec { + name = "fstrcmp-${version}"; + version = "0.7"; + + src = fetchzip { + url = "https://sourceforge.net/projects/fstrcmp/files/fstrcmp/${version}/fstrcmp-${version}.D001.tar.gz"; + sha256 = "0yg3y3k0wz50gmhgigfi2dx725w1gc8snb95ih7vpcnj6kabgz9a"; + }; + + outputs = [ "out" "dev" "doc" "man" "devman" ]; + + nativeBuildInputs = [ libtool ghostscript groff ]; + + enableParallelBuilding = true; + + meta = with stdenv.lib; { + description = "Make fuzzy comparisons of strings and byte arrays"; + longDescription = '' + The fstrcmp project provides a library that is used to make fuzzy + comparisons of strings and byte arrays, including multi-byte character + strings. + ''; + homepage = http://fstrcmp.sourceforge.net/; + downloadPage = https://sourceforge.net/projects/fstrcmp/; + license = licenses.gpl3; + maintainers = [ maintainers.sephalon ]; + platforms = platforms.unix; + }; +} diff --git a/pkgs/development/libraries/gdcm/default.nix b/pkgs/development/libraries/gdcm/default.nix index cba31f45d5572311b9ee09804656f6a710e5d44e..91c384b249a4fb846af5ac3bf381c33c469b72aa 100644 --- a/pkgs/development/libraries/gdcm/default.nix +++ b/pkgs/development/libraries/gdcm/default.nix @@ -1,12 +1,12 @@ { stdenv, fetchurl, cmake, vtk }: stdenv.mkDerivation rec { - version = "2.8.7"; + version = "2.8.8"; name = "gdcm-${version}"; src = fetchurl { url = "mirror://sourceforge/gdcm/${name}.tar.bz2"; - sha256 = "1psl4r0i3hfhjjm9y8q5ml9lnlal4212bm8df21087dddi9nfl62"; + sha256 = "1iwfrk04sd22wkr1ivbg8gixl34fv9zfzwnfqvrq121nadb0s29b"; }; dontUseCmakeBuildDir = true; diff --git a/pkgs/development/libraries/gegl/4.0.nix b/pkgs/development/libraries/gegl/4.0.nix index c8b7b3b8eca51d8de819327e9989f537c482e8ab..cb7f2621353d33c4b4b8629807af5f6cf636e128 100644 --- a/pkgs/development/libraries/gegl/4.0.nix +++ b/pkgs/development/libraries/gegl/4.0.nix @@ -3,7 +3,7 @@ , libwebp, gnome3, libintl }: let - version = "0.4.8"; + version = "0.4.12"; in stdenv.mkDerivation rec { name = "gegl-${version}"; @@ -12,7 +12,7 @@ in stdenv.mkDerivation rec { src = fetchurl { url = "https://download.gimp.org/pub/gegl/${stdenv.lib.versions.majorMinor version}/${name}.tar.bz2"; - sha256 = "0jdfhf8wikba4h68k505x0br3gisiwivc33aca8v3ibaqpp6i53i"; + sha256 = "0ljqxc4iyy2hrj31pxcy1xp4xm5zbx1nigqisphmg4p8mcz2jrz9"; }; enableParallelBuilding = true; diff --git a/pkgs/development/libraries/git2/0.27.nix b/pkgs/development/libraries/git2/0.27.nix index db627449e1ba1ad41abc69bc029b4ebea0fa6c93..93948a1b0d676a80446b347c42af87c8cd7b106a 100644 --- a/pkgs/development/libraries/git2/0.27.nix +++ b/pkgs/development/libraries/git2/0.27.nix @@ -4,14 +4,14 @@ }: stdenv.mkDerivation rec { - version = "0.27.5"; + version = "0.27.7"; name = "libgit2-${version}"; src = fetchFromGitHub { owner = "libgit2"; repo = "libgit2"; rev = "v${version}"; - sha256 = "1f6jxgw4pf6jln439v1pj8a0kgym5sq5xry8x0gq18dr5gv3wims"; + sha256 = "1q3mp7xjpbmdsnk4sdzf2askbb4pgbxcmr1h7y7zk2738dndwkha"; }; cmakeFlags = [ "-DTHREADSAFE=ON" ]; diff --git a/pkgs/development/libraries/glbinding/default.nix b/pkgs/development/libraries/glbinding/default.nix index 339e0d8d60b9e7c2ae2bd26a9b61116cf49831c9..60778df663a0848208340d5e9a9d18105b10abf9 100644 --- a/pkgs/development/libraries/glbinding/default.nix +++ b/pkgs/development/libraries/glbinding/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { name = "${pname}-${version}"; pname = "glbinding"; - version = "2.1.4"; + version = "3.0.2"; src = fetchFromGitHub { owner = "cginternals"; repo = pname; rev = "v${version}"; - sha256 = "1yic3p2iqzxc7wrjnqclx7vcaaqx5fiysq9rqbi6v390jqkg3zlz"; + sha256 = "1lvcps0n0p8gg0p2bkm5aq4b4kv8bvxlaaf4fcham2pgbgzil9d4"; }; buildInputs = [ cmake libGLU xlibsWrapper ]; diff --git a/pkgs/development/libraries/glfw/3.x.nix b/pkgs/development/libraries/glfw/3.x.nix index 8d4d4d10038a247c379de77be4103ce5c8d90181..9cbc60dcef5a5afd27bed73df3951bfd4ead8912 100644 --- a/pkgs/development/libraries/glfw/3.x.nix +++ b/pkgs/development/libraries/glfw/3.x.nix @@ -1,5 +1,5 @@ { stdenv, lib, fetchFromGitHub, cmake, libGL, libXrandr, libXinerama, libXcursor, libX11 -, darwin, fixDarwinDylibNames +, cf-private, Cocoa, Kernel, fixDarwinDylibNames }: stdenv.mkDerivation rec { @@ -21,7 +21,11 @@ stdenv.mkDerivation rec { buildInputs = [ libX11 libXrandr libXinerama libXcursor - ] ++ lib.optionals stdenv.isDarwin (with darwin.apple_sdk.frameworks; [ Cocoa Kernel fixDarwinDylibNames ]); + ] ++ lib.optionals stdenv.isDarwin [ + Cocoa Kernel fixDarwinDylibNames + # Needed for NSDefaultRunLoopMode symbols. + cf-private + ]; cmakeFlags = [ "-DBUILD_SHARED_LIBS=ON" ]; diff --git a/pkgs/development/libraries/glibc/default.nix b/pkgs/development/libraries/glibc/default.nix index 8b17ff9e55850bacf2774c8cff4aab49825b160e..8a450959c6b2c58cfb860b923fb3716bbc750dd4 100644 --- a/pkgs/development/libraries/glibc/default.nix +++ b/pkgs/development/libraries/glibc/default.nix @@ -10,6 +10,12 @@ callPackage ./common.nix { inherit stdenv; } { inherit withLinuxHeaders profilingLibraries installLocales withGd; + # Note: + # Things you write here override, and do not add to, + # the values in `common.nix`. + # (For example, if you define `patches = [...]` here, it will + # override the patches in `common.nix`.) + NIX_NO_SELF_RPATH = true; postConfigure = '' diff --git a/pkgs/development/libraries/gmime/3.nix b/pkgs/development/libraries/gmime/3.nix index 65c99610a5c7375c0b781647e5630363b5f94827..63d00f1dd1a7d77efd397b15577a1bd1bdfaf186 100644 --- a/pkgs/development/libraries/gmime/3.nix +++ b/pkgs/development/libraries/gmime/3.nix @@ -1,17 +1,17 @@ -{ stdenv, fetchurl, pkgconfig, glib, zlib, gnupg, gpgme, libidn, gobjectIntrospection }: +{ stdenv, fetchurl, pkgconfig, glib, zlib, gnupg, gpgme, libidn2, libunistring, gobjectIntrospection }: stdenv.mkDerivation rec { - version = "3.2.0"; + version = "3.2.1"; name = "gmime-${version}"; src = fetchurl { url = "mirror://gnome/sources/gmime/3.2/${name}.tar.xz"; - sha256 = "1q6palbpf6lh6bvy9ly26q5apl5k0z0r4mvl6zzqh90rz4rn1v3m"; + sha256 = "0q65nalxzpyjg37gdlpj9v6028wp0qx47z96q0ff6znw217nzzjn"; }; outputs = [ "out" "dev" ]; - buildInputs = [ gobjectIntrospection zlib gpgme libidn ]; + buildInputs = [ gobjectIntrospection zlib gpgme libidn2 libunistring ]; nativeBuildInputs = [ pkgconfig ]; propagatedBuildInputs = [ glib ]; configureFlags = [ "--enable-introspection=yes" ]; @@ -23,6 +23,8 @@ stdenv.mkDerivation rec { checkInputs = [ gnupg ]; + doCheck = true; + enableParallelBuilding = true; meta = with stdenv.lib; { diff --git a/pkgs/development/libraries/granite/default.nix b/pkgs/development/libraries/granite/default.nix index 1ee0970ffad2305b7713f696ee2f01b15a9ea1fa..6892ea6364d71e4d6a90eb609545a2ad80670b2c 100644 --- a/pkgs/development/libraries/granite/default.nix +++ b/pkgs/development/libraries/granite/default.nix @@ -1,12 +1,14 @@ -{ stdenv, fetchFromGitHub, perl, cmake, ninja, vala_0_40, pkgconfig, gobjectIntrospection, glib, gtk3, gnome3, gettext }: +{ stdenv, fetchFromGitHub, cmake, ninja, vala_0_40, pkgconfig, gobjectIntrospection, gnome3, gtk3, glib, gettext }: stdenv.mkDerivation rec { - name = "granite-${version}"; - version = "5.1.0"; + pname = "granite"; + version = "5.2.0"; + + name = "${pname}-${version}"; src = fetchFromGitHub { owner = "elementary"; - repo = "granite"; + repo = pname; rev = version; sha256 = "1v1yhz6rp616xi417m9r8072s6mpz5i8vkdyj264b73p0lgjwh40"; }; @@ -21,10 +23,10 @@ stdenv.mkDerivation rec { gettext gobjectIntrospection ninja - perl pkgconfig - vala_0_40 + vala_0_40 # should be `elementary.vala` when elementary attribute set is merged ]; + buildInputs = [ glib gnome3.libgee @@ -33,9 +35,12 @@ stdenv.mkDerivation rec { meta = with stdenv.lib; { description = "An extension to GTK+ used by elementary OS"; - longDescription = "An extension to GTK+ that provides several useful widgets and classes to ease application development. Designed for elementary OS."; + longDescription = '' + Granite is a companion library for GTK+ and GLib. Among other things, it provides complex widgets and convenience functions + designed for use in apps built for elementary OS. + ''; homepage = https://github.com/elementary/granite; - license = licenses.lgpl3; + license = licenses.lgpl3Plus; platforms = platforms.linux; maintainers = with maintainers; [ vozz worldofpeace ]; }; diff --git a/pkgs/development/libraries/grpc/default.nix b/pkgs/development/libraries/grpc/default.nix index a21e2aacde2a6d01c1fa450c38650410a4622f15..f4145c85199b5ad50848447a06fa76c458a91a93 100644 --- a/pkgs/development/libraries/grpc/default.nix +++ b/pkgs/development/libraries/grpc/default.nix @@ -26,6 +26,8 @@ stdenv.mkDerivation rec { rm -vf BUILD ''; + NIX_CFLAGS_COMPILE = stdenv.lib.optionalString stdenv.cc.isClang "-Wno-error=unknown-warning-option"; + enableParallelBuilds = true; meta = with stdenv.lib; { diff --git a/pkgs/development/libraries/gsasl/default.nix b/pkgs/development/libraries/gsasl/default.nix index 71da2c716f84460006b25eb49548c3e7f2e6e1da..a1df933149fd2c7a918ac9c9929609ccafbf4c6b 100644 --- a/pkgs/development/libraries/gsasl/default.nix +++ b/pkgs/development/libraries/gsasl/default.nix @@ -12,7 +12,7 @@ stdenv.mkDerivation rec { configureFlags = [ "--with-gssapi-impl=mit" ]; - doCheck = true; + doCheck = !stdenv.hostPlatform.isDarwin; meta = { description = "GNU SASL, Simple Authentication and Security Layer library"; diff --git a/pkgs/development/libraries/http-parser/default.nix b/pkgs/development/libraries/http-parser/default.nix index 5d4eae4e06392fecfadeef210e093d79bb9bf20f..02d767000682b2ce9044f601e1fbd40d045ce699 100644 --- a/pkgs/development/libraries/http-parser/default.nix +++ b/pkgs/development/libraries/http-parser/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchurl, python2Packages, utillinux, fixDarwinDylibNames }: +{ stdenv, fetchurl }: let version = "2.8.1"; @@ -10,38 +10,18 @@ in stdenv.mkDerivation { sha256 = "15ids8k2f0xhnnxh4m85w2f78pg5ndiwrpl24kyssznnp1l5yqai"; }; + NIX_CFLAGS_COMPILE = "-Wno-error"; patches = [ ./build-shared.patch ]; + makeFlags = [ "DESTDIR=" "PREFIX=$(out)" ]; + buildFlags = "library"; + doCheck = true; + checkTarget = "test"; - configurePhase = "gyp -f make --depth=`pwd` http_parser.gyp"; - - buildFlags = [ "BUILDTYPE=Release" ]; - - buildInputs = - [ python2Packages.gyp ] - ++ stdenv.lib.optional stdenv.isLinux utillinux - ++ stdenv.lib.optionals stdenv.isDarwin [ python2Packages.python fixDarwinDylibNames ]; - - doCheck = !stdenv.isDarwin; - - checkPhase = '' - out/Release/test-nonstrict - out/Release/test-strict - ''; - - installPhase = '' - mkdir -p $out/lib - mv out/Release/${if stdenv.isDarwin then "*.dylib" else "lib.target/*"} $out/lib - - mkdir -p $out/include - mv http_parser.h $out/include - ''; - - meta = { + meta = with stdenv.lib; { description = "An HTTP message parser written in C"; - homepage = https://github.com/joyent/http-parser; - - license = stdenv.lib.licenses.mit; - platforms = stdenv.lib.platforms.unix; + maintainers = with maintainers; [ matthewbauer ]; + license = licenses.mit; + platforms = platforms.unix; }; } diff --git a/pkgs/development/libraries/imlib/default.nix b/pkgs/development/libraries/imlib/default.nix index 2b95742c44c0629b68fd3dc6bc88e5a23ccfa650..eec68015c25b36ed7dbf7e1aae43b5b89507de77 100644 --- a/pkgs/development/libraries/imlib/default.nix +++ b/pkgs/development/libraries/imlib/default.nix @@ -15,7 +15,9 @@ stdenv.mkDerivation { buildInputs = [libjpeg libXext libX11 xextproto libtiff libungif libpng]; - meta = { - platforms = stdenv.lib.platforms.unix; + meta = with stdenv.lib; { + description = "An image loading and rendering library for X11"; + platforms = platforms.unix; + license = with licenses; [ gpl2 lgpl2 ]; }; } diff --git a/pkgs/development/libraries/incrtcl/default.nix b/pkgs/development/libraries/incrtcl/default.nix index b9781ba9aa084b604df78fd06666b3ac3c4958d1..a4a009c66580be34c841231e6a2a6a85f66e38ff 100644 --- a/pkgs/development/libraries/incrtcl/default.nix +++ b/pkgs/development/libraries/incrtcl/default.nix @@ -3,7 +3,7 @@ stdenv.mkDerivation rec { name = "incrtcl-${version}"; version = "4.0.4"; - + src = fetchurl { url = mirror://sourceforge/incrtcl/%5BIncr%20Tcl_Tk%5D-source/3.4/itcl4.0.4.tar.gz; sha256 = "1ppc9b13cvmc6rp77k7dl2zb26xk0z30vxygmr4h1xr2r8w091k3"; @@ -22,9 +22,10 @@ stdenv.mkDerivation rec { libPrefix = "itcl3.4"; }; - meta = { + meta = with stdenv.lib; { homepage = http://incrtcl.sourceforge.net/; description = "Object Oriented Enhancements for Tcl/Tk"; - platforms = stdenv.lib.platforms.unix; + platforms = platforms.unix; + license = licenses.tcltk; }; } diff --git a/pkgs/development/libraries/jama/default.nix b/pkgs/development/libraries/jama/default.nix index 36eedadc4c2e793083a78cb308f6279f1bb4bcc2..29fabdbb3b63a2783d5f9c2717ddbdd5eb97d265 100644 --- a/pkgs/development/libraries/jama/default.nix +++ b/pkgs/development/libraries/jama/default.nix @@ -3,7 +3,7 @@ stdenv.mkDerivation rec { name = "jama-${version}"; version = "1.2.5"; - + src = fetchurl { url = https://math.nist.gov/tnt/jama125.zip; sha256 = "031ns526fvi2nv7jzzv02i7i5sjcyr0gj884i3an67qhsx8vyckl"; @@ -21,9 +21,10 @@ stdenv.mkDerivation rec { cp *.h $out/include ''; - meta = { + meta = with stdenv.lib; { homepage = https://math.nist.gov/tnt/; description = "JAMA/C++ Linear Algebra Package: Java-like matrix C++ templates"; - platforms = stdenv.lib.platforms.unix; + platforms = platforms.unix; + license = licenses.publicDomain; }; } diff --git a/pkgs/development/libraries/jasper/default.nix b/pkgs/development/libraries/jasper/default.nix index de4848c7dda403cd2841656c3e74258250ecbda8..eb9282274328b2e92ee9d11bf96c87755cf3e092 100644 --- a/pkgs/development/libraries/jasper/default.nix +++ b/pkgs/development/libraries/jasper/default.nix @@ -40,6 +40,7 @@ stdenv.mkDerivation rec { homepage = https://www.ece.uvic.ca/~frodo/jasper/; description = "JPEG2000 Library"; platforms = platforms.unix; + license = licenses.jasper; maintainers = with maintainers; [ pSub ]; }; } diff --git a/pkgs/development/libraries/java/dbus-java/default.nix b/pkgs/development/libraries/java/dbus-java/default.nix index daee9adb1fdceadaca61a08924b989297ac5900a..5ec10cc7e0dfdb0243ad9511460f8a1f80b2aab0 100644 --- a/pkgs/development/libraries/java/dbus-java/default.nix +++ b/pkgs/development/libraries/java/dbus-java/default.nix @@ -18,8 +18,9 @@ stdenv.mkDerivation { -e "s|install: install-bin install-man install-doc|install: install-bin|" Makefile ''; - meta = { - platforms = stdenv.lib.platforms.linux; - maintainers = [ stdenv.lib.maintainers.sander ]; + meta = with stdenv.lib; { + platforms = platforms.linux; + maintainers = [ maintainers.sander ]; + license = licenses.afl21; }; } diff --git a/pkgs/development/libraries/java/gwt-dragdrop/default.nix b/pkgs/development/libraries/java/gwt-dragdrop/default.nix index b9d66fdc971691c7abb1219b379a590b51f69a3e..e34699d7740ed5f7c54c59f744cc5f45011bc3f1 100644 --- a/pkgs/development/libraries/java/gwt-dragdrop/default.nix +++ b/pkgs/development/libraries/java/gwt-dragdrop/default.nix @@ -3,13 +3,14 @@ stdenv.mkDerivation { name = "gwt-dnd-2.6.5"; builder = ./builder.sh; - + src = fetchurl { url = http://gwt-dnd.googlecode.com/files/gwt-dnd-2.6.5.jar; sha256 = "07zdlr8afs499asnw0dcjmw1cnjc646v91lflx5dv4qj374c97fw"; - }; + }; - meta = { - platforms = stdenv.lib.platforms.unix; + meta = with stdenv.lib; { + platforms = platforms.unix; + license = licenses.asl20; }; } diff --git a/pkgs/development/libraries/java/gwt-widgets/default.nix b/pkgs/development/libraries/java/gwt-widgets/default.nix index b182964f657902ab5f20989613a174ffe79ff74b..ec407076906d0ccb7fb4375fcb8b71687e2e33f1 100644 --- a/pkgs/development/libraries/java/gwt-widgets/default.nix +++ b/pkgs/development/libraries/java/gwt-widgets/default.nix @@ -3,13 +3,14 @@ stdenv.mkDerivation { name = "gwt-widgets-0.2.0"; builder = ./builder.sh; - + src = fetchurl { url = mirror://sourceforge/gwt-widget/gwt-widgets-0.2.0-bin.tar.gz; sha256 = "09isj4j6842rj13nv8264irkjjhvmgihmi170ciabc98911bakxb"; - }; + }; - meta = { - platforms = stdenv.lib.platforms.unix; + meta = with stdenv.lib; { + platforms = platforms.unix; + license = with licenses; [ afl21 lgpl2 ]; }; } diff --git a/pkgs/development/libraries/java/hsqldb/default.nix b/pkgs/development/libraries/java/hsqldb/default.nix index 97ffcb647d621fc060cfe131d8da999c5b128437..a478ab0fc5028ed1ebe8dfe9b9e1cd5ffa76487d 100644 --- a/pkgs/development/libraries/java/hsqldb/default.nix +++ b/pkgs/development/libraries/java/hsqldb/default.nix @@ -12,8 +12,9 @@ stdenv.mkDerivation { buildInputs = [ unzip ]; - - meta = { - platforms = stdenv.lib.platforms.unix; + + meta = with stdenv.lib; { + platforms = platforms.unix; + license = licenses.bsd3; }; } diff --git a/pkgs/development/libraries/java/httpunit/default.nix b/pkgs/development/libraries/java/httpunit/default.nix index 221a2e93e4fca23739d9027a859eb1be709eb5d5..500c575f73aa95186f29226b9881f04fb21d0e8f 100644 --- a/pkgs/development/libraries/java/httpunit/default.nix +++ b/pkgs/development/libraries/java/httpunit/default.nix @@ -11,7 +11,9 @@ stdenv.mkDerivation { inherit unzip; - meta = { - platforms = stdenv.lib.platforms.unix; + meta = with stdenv.lib; { + homepage = http://httpunit.sourceforge.net; + platforms = platforms.unix; + license = licenses.mit; }; } diff --git a/pkgs/development/libraries/java/jdom/default.nix b/pkgs/development/libraries/java/jdom/default.nix index 99d213a01dac03b1a5425f609d86468fdef151d5..16755471acd7688f6d8262e479ec5d22dbf56348 100644 --- a/pkgs/development/libraries/java/jdom/default.nix +++ b/pkgs/development/libraries/java/jdom/default.nix @@ -9,7 +9,10 @@ stdenv.mkDerivation { sha256 = "1igmxzcy0s25zcy9vmcw0kd13lh60r0b4qg8lnp1jic33f427pxf"; }; - meta = { - platforms = stdenv.lib.platforms.unix; + meta = with stdenv.lib; { + description = "Java-based solution for accessing, manipulating, and outputting XML data from Java code"; + homepage = http://www.jdom.org; + platforms = platforms.unix; + license = licenses.bsdOriginal; }; } diff --git a/pkgs/development/libraries/java/libmatthew-java/default.nix b/pkgs/development/libraries/java/libmatthew-java/default.nix index ad5192f94ce226b9589ac63a874f28105b2e8f7f..98291a7763cab11fa53bd8949d50388243ca545d 100644 --- a/pkgs/development/libraries/java/libmatthew-java/default.nix +++ b/pkgs/development/libraries/java/libmatthew-java/default.nix @@ -10,8 +10,9 @@ stdenv.mkDerivation { PREFIX=''''${out}''; buildInputs = [ jdk ]; - meta = { - platforms = stdenv.lib.platforms.linux; - maintainers = [ stdenv.lib.maintainers.sander ]; + meta = with stdenv.lib; { + platforms = platforms.linux; + maintainers = [ maintainers.sander ]; + license = licenses.mit; }; } diff --git a/pkgs/development/libraries/java/lombok/default.nix b/pkgs/development/libraries/java/lombok/default.nix index 5ec4634d6323ee72208614c94634b76fa961afba..7f932d52dc411027a2418cab3962d54abdca6bc9 100644 --- a/pkgs/development/libraries/java/lombok/default.nix +++ b/pkgs/development/libraries/java/lombok/default.nix @@ -1,11 +1,11 @@ { stdenv, fetchurl }: stdenv.mkDerivation rec { - name = "lombok-1.16.22"; + name = "lombok-1.18.4"; src = fetchurl { url = "https://projectlombok.org/downloads/${name}.jar"; - sha256 = "1hr2jjlqdnxrw7ablqkf7ljc6n2q6a04ww14di06zs6i3l82zzpa"; + sha256 = "0hlpycnmzd71ihn59hzf445dvwky2lkv57jimx91i6v7xcnr5wrr"; }; buildCommand = '' diff --git a/pkgs/development/libraries/java/lucene/default.nix b/pkgs/development/libraries/java/lucene/default.nix index 6f6534cee3eafc287f6ee783d7037a8eb3edf671..691b9905b04f60f8f1038c7fb206cf444f75d197 100644 --- a/pkgs/development/libraries/java/lucene/default.nix +++ b/pkgs/development/libraries/java/lucene/default.nix @@ -11,7 +11,9 @@ stdenv.mkDerivation rec { sha256 = "1mxaxg65f7v8n60irjwm24v7hcisbl0srmpvcy1l4scs6rjj1awh"; }; - meta = { - platforms = stdenv.lib.platforms.unix; + meta = with stdenv.lib; { + description = "Java full-text search engine"; + platforms = platforms.unix; + license = licenses.asl20; }; } diff --git a/pkgs/development/libraries/java/mockobjects/default.nix b/pkgs/development/libraries/java/mockobjects/default.nix index 551375d33bd648eb70d834b048d2def30cc7dd55..ae93765ff9818caac0e1e072e667d431f1b9b7d1 100644 --- a/pkgs/development/libraries/java/mockobjects/default.nix +++ b/pkgs/development/libraries/java/mockobjects/default.nix @@ -9,7 +9,9 @@ stdenv.mkDerivation { sha256 = "18rnyqfcyh0s3dwkkaszdd50ssyjx5fa1y3ii309ldqg693lfgnz"; }; - meta = { - platforms = stdenv.lib.platforms.unix; + meta = with stdenv.lib; { + description = "Generic unit testing framework and methodology for testing any kind of code"; + platforms = platforms.unix; + license = licenses.asl20; }; } diff --git a/pkgs/development/libraries/java/saxon/default.nix b/pkgs/development/libraries/java/saxon/default.nix index ca9aa8fc36e8be7471b53613a31cae6fdd349efd..687e1e8a1deb5cb5a0bd2914806cb7a710319994 100644 --- a/pkgs/development/libraries/java/saxon/default.nix +++ b/pkgs/development/libraries/java/saxon/default.nix @@ -71,12 +71,12 @@ in { saxon-he = common { pname = "saxon-he"; - version = "9.8.0.6"; + version = "9.9.0.1"; prog = "saxon-he"; jar = "saxon9he"; src = fetchurl { - url = mirror://sourceforge/saxon/Saxon-HE/9.8/SaxonHE9-8-0-6J.zip; - sha256 = "03r4djm298rxz8q7jph63h9niglrl3rifxskq1b3bclx5rgxi2lk"; + url = mirror://sourceforge/saxon/Saxon-HE/9.9/SaxonHE9-9-0-1J.zip; + sha256 = "1inxd7ia7rl9fxfrw8dy9sb7rqv76ipblaki5262688wf2dscs60"; }; description = "Processor for XSLT 3.0, XPath 2.0 and 3.1, and XQuery 3.1"; }; diff --git a/pkgs/development/libraries/jemalloc/common.nix b/pkgs/development/libraries/jemalloc/common.nix index d8866ae3ff8919d8bbf6f3a92ff4279675b37ac3..593f4411f19f990ed000e2aaf5bb1958176bd0fb 100644 --- a/pkgs/development/libraries/jemalloc/common.nix +++ b/pkgs/development/libraries/jemalloc/common.nix @@ -12,11 +12,7 @@ stdenv.mkDerivation (rec { # By default, jemalloc puts a je_ prefix onto all its symbols on OSX, which # then stops downstream builds (mariadb in particular) from detecting it. This # option should remove the prefix and give us a working jemalloc. - configureFlags = stdenv.lib.optional stdenv.isDarwin "--with-jemalloc-prefix=" - # jemalloc is unable to correctly detect transparent hugepage support on - # ARM (https://github.com/jemalloc/jemalloc/issues/526), and the default - # kernel ARMv6/7 kernel does not enable it, so we explicitly disable support - ++ stdenv.lib.optional stdenv.isAarch32 "--disable-thp"; + configureFlags = stdenv.lib.optional stdenv.isDarwin "--with-jemalloc-prefix="; doCheck = true; enableParallelBuilding = true; diff --git a/pkgs/development/libraries/jemalloc/default.nix b/pkgs/development/libraries/jemalloc/default.nix index 40c06cbffdf019661beb7f19032aea508fb923d8..8cb7c1f96733edc5039f1a4cc695511f911a085f 100644 --- a/pkgs/development/libraries/jemalloc/default.nix +++ b/pkgs/development/libraries/jemalloc/default.nix @@ -1,10 +1,6 @@ { stdenv, fetchurl, fetchpatch }: import ./common.nix { inherit stdenv fetchurl; - version = "5.0.1"; - sha256 = "4814781d395b0ef093b21a08e8e6e0bd3dab8762f9935bbfb71679b0dea7c3e9"; - patches = stdenv.lib.optional stdenv.isAarch64 (fetchpatch { - url = "https://patch-diff.githubusercontent.com/raw/jemalloc/jemalloc/pull/1035.patch"; - sha256 = "02y0q3dp253bipxv4r954nqipbjbj92p6ww9bx5bk3d8pa81wkqq"; - }); + version = "5.1.0"; + sha256 = "0s3jpcyhzia8d4k0xyc67is78kg416p9yc3c2f9w6fhhqqffd5jk"; } diff --git a/pkgs/development/libraries/jxrlib/default.nix b/pkgs/development/libraries/jxrlib/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..47c87da065bad20b1149efcc305c6ebee0a01586 --- /dev/null +++ b/pkgs/development/libraries/jxrlib/default.nix @@ -0,0 +1,28 @@ +{ stdenv, fetchFromGitHub, python }: + +stdenv.mkDerivation rec { + name = "${pname}-${version}"; + pname = "jxrlib"; + version = "1.1"; + + # Use the source from a fork on github because CodePlex does not + # deliver an easily downloadable tarball. + src = fetchFromGitHub { + owner = "4creators"; + repo = pname; + rev = "f7521879862b9085318e814c6157490dd9dbbdb4"; + sha256 = "0rk3hbh00nw0wgbfbqk1szrlfg3yq7w6ar16napww3nrlm9cj65w"; + }; + + nativeBuildInputs = [ python ]; + + makeFlags = [ "DIR_INSTALL=$(out)" "SHARED=1" ]; + + meta = with stdenv.lib; { + description = "Implementation of the JPEG XR image codec standard"; + homepage = https://jxrlib.codeplex.com; + license = licenses.bsd2; + platforms = platforms.linux; + maintainers = with maintainers; [ romildo ]; + }; +} diff --git a/pkgs/development/libraries/kerberos/krb5.nix b/pkgs/development/libraries/kerberos/krb5.nix index 4e3ba399cc3f748a139b2c893db00346286aa46a..afb928aff6e977f6d598fb2b32b2d9dd12e6f153 100644 --- a/pkgs/development/libraries/kerberos/krb5.nix +++ b/pkgs/development/libraries/kerberos/krb5.nix @@ -40,7 +40,7 @@ stdenv.mkDerivation rec { # Provides the mig command used by the build scripts ++ optional stdenv.isDarwin bootstrap_cmds; buildInputs = [ openssl ] - ++ optionals (stdenv.hostPlatform.isLinux) [ keyutils ] + ++ optionals (stdenv.hostPlatform.isLinux && stdenv.hostPlatform.libc != "bionic") [ keyutils ] ++ optionals (!libOnly) [ openldap libedit ]; preConfigure = "cd ./src"; diff --git a/pkgs/development/libraries/leatherman/default.nix b/pkgs/development/libraries/leatherman/default.nix index 259975815d8e25807b3974bbb4b0f0b671ee0e6d..26e2bd0811c0a5e094959061725e967453a9c05f 100644 --- a/pkgs/development/libraries/leatherman/default.nix +++ b/pkgs/development/libraries/leatherman/default.nix @@ -2,10 +2,10 @@ stdenv.mkDerivation rec { name = "leatherman-${version}"; - version = "1.5.2"; + version = "1.5.3"; src = fetchFromGitHub { - sha256 = "0drn8wdl4mwqz84lwc7cjmc6pxj2jwpx7n2dxwzwj43ps624zhbj"; + sha256 = "04b2wii5d0ypar8wrk0msybdq01z1r23xsvnn67bi2mffvczi5l2"; rev = version; repo = "leatherman"; owner = "puppetlabs"; diff --git a/pkgs/development/libraries/leveldb/default.nix b/pkgs/development/libraries/leveldb/default.nix index 2b50c09af5cceb39ce4a7e5ecfc972866f64a747..c459a4048e4557d9789dcc4a880920bdcadb4044 100644 --- a/pkgs/development/libraries/leveldb/default.nix +++ b/pkgs/development/libraries/leveldb/default.nix @@ -2,21 +2,21 @@ stdenv.mkDerivation rec { name = "leveldb-${version}"; - version = "1.18"; + version = "1.20"; src = fetchFromGitHub { owner = "google"; repo = "leveldb"; rev = "v${version}"; - sha256 = "1bnsii47vbyqnbah42qgq6pbmmcg4k3fynjnw7whqfv6lpdgmb8d"; + sha256 = "01kxga1hv4wp94agx5vl3ybxfw5klqrdsrb6p6ywvnjmjxm8322y"; }; buildPhase = '' - make all leveldbutil libmemenv.a + make all ''; installPhase = (stdenv.lib.optionalString stdenv.isDarwin '' - for file in *.dylib*; do + for file in out-shared/*.dylib*; do install_name_tool -id $out/lib/$file $file done '') + # XXX consider removing above after transition to cmake in the next release @@ -27,9 +27,10 @@ stdenv.mkDerivation rec { mkdir -p $out/include/leveldb/helpers cp helpers/memenv/memenv.h $out/include/leveldb/helpers - cp lib* $out/lib + cp out-shared/lib* $out/lib + cp out-static/lib* $out/lib - cp leveldbutil $out/bin + cp out-static/leveldbutil $out/bin "; meta = with stdenv.lib; { diff --git a/pkgs/development/libraries/libaccounts-glib/default.nix b/pkgs/development/libraries/libaccounts-glib/default.nix index 16e9f213ed48470a51fe1f729ee2ec086a27374e..e8e23ed5ffbb40e87eec479615562190d948b324 100644 --- a/pkgs/development/libraries/libaccounts-glib/default.nix +++ b/pkgs/development/libraries/libaccounts-glib/default.nix @@ -1,29 +1,48 @@ -{ stdenv, fetchFromGitLab, autoconf, automake, glib -, gtk-doc, libtool, libxml2, libxslt, pkgconfig, sqlite }: +{ stdenv, fetchFromGitLab, meson, ninja, glib, check, python3, vala, gtk-doc, glibcLocales +, libxml2, libxslt, pkgconfig, sqlite, docbook_xsl, docbook_xml_dtd_43, gobjectIntrospection }: -let version = "1.23"; in stdenv.mkDerivation rec { name = "libaccounts-glib-${version}"; + version = "1.24"; + + outputs = [ "out" "dev" "devdoc" "py" ]; src = fetchFromGitLab { - sha256 = "11cvl3ch0y93756k90mw1swqv0ylr8qgalmvcn5yari8z4sg6cgg"; - rev = "VERSION_${version}"; - repo = "libaccounts-glib"; owner = "accounts-sso"; + repo = "libaccounts-glib"; + rev = version; + sha256 = "0y8smg1rd279lrr9ad8b499i8pbkajmwd4xn41rdh9h93hs9apn7"; }; - buildInputs = [ glib libxml2 libxslt sqlite ]; - nativeBuildInputs = [ autoconf automake gtk-doc libtool pkgconfig ]; + # See: https://gitlab.com/accounts-sso/libaccounts-glib/merge_requests/22 + patches = [ ./py-override.patch ]; + + nativeBuildInputs = [ + check + docbook_xml_dtd_43 + docbook_xsl + glibcLocales + gobjectIntrospection + gtk-doc + meson + ninja + pkgconfig + vala + ]; - postPatch = '' - NOCONFIGURE=1 ./autogen.sh - ''; + buildInputs = [ + glib + libxml2 + libxslt + python3.pkgs.pygobject3 + sqlite + ]; - configurePhase = '' - HAVE_GCOV_FALSE="#" ./configure $configureFlags --prefix=$out - ''; + LC_ALL = "en_US.UTF-8"; - NIX_CFLAGS_COMPILE = "-Wno-error=deprecated-declarations"; # since glib-2.46 + mesonFlags = [ + "-Dpy-overrides-dir=${placeholder ''py''}/${python3.sitePackages}/gi/overrides" + ]; meta = with stdenv.lib; { description = "Library for managing accounts which can be used from GLib applications"; diff --git a/pkgs/development/libraries/libaccounts-glib/py-override.patch b/pkgs/development/libraries/libaccounts-glib/py-override.patch new file mode 100644 index 0000000000000000000000000000000000000000..4179f4fa0af0e316ef244546a9568b621bb30c43 --- /dev/null +++ b/pkgs/development/libraries/libaccounts-glib/py-override.patch @@ -0,0 +1,38 @@ +diff --git a/libaccounts-glib/pygobject/meson.build b/libaccounts-glib/pygobject/meson.build +index fa1f4a0..588c4ce 100644 +--- a/libaccounts-glib/pygobject/meson.build ++++ b/libaccounts-glib/pygobject/meson.build +@@ -1,11 +1,19 @@ +-python3 = import('python3') +-python_exec = python3.find_python() +-python_exec_result = run_command(python_exec, ['-c', 'import gi; from os.path import abspath; print(abspath(gi._overridesdir))']) ++py_override = get_option('py-overrides-dir') + +-if python_exec_result.returncode() != 0 +- error('Failed to retreive the python GObject override directory') ++if py_override == '' ++ python3 = import('python3') ++ python_exec = python3.find_python() ++ ++ python_exec_result = run_command(python_exec, ['-c', 'import gi; from os.path import abspath; print(abspath(gi._overridesdir))']) ++ ++ if python_exec_result.returncode() != 0 ++ error('Failed to retreive the python GObject override directory') ++ endif ++ ++ py_override = python_exec_result.stdout().strip() + endif + +-install_data('Accounts.py', +- install_dir: join_paths(python_exec_result.stdout().strip()) ++install_data( ++ 'Accounts.py', ++ install_dir: py_override + ) +diff --git a/meson_options.txt b/meson_options.txt +new file mode 100644 +index 0000000..2c33804 +--- /dev/null ++++ b/meson_options.txt +@@ -0,0 +1 @@ ++option('py-overrides-dir', type : 'string', value : '', description: 'Path to pygobject overrides directory') diff --git a/pkgs/development/libraries/libcec/default.nix b/pkgs/development/libraries/libcec/default.nix index e60f5e316bd07285d78cb0e6eab86a249b7bc34d..6dec972e249bb4de8cb5cb17725aebcfba8a4628 100644 --- a/pkgs/development/libraries/libcec/default.nix +++ b/pkgs/development/libraries/libcec/default.nix @@ -1,13 +1,13 @@ { stdenv, fetchurl, cmake, pkgconfig, udev, libcec_platform }: -let version = "4.0.2"; in +let version = "4.0.3"; in stdenv.mkDerivation { name = "libcec-${version}"; src = fetchurl { url = "https://github.com/Pulse-Eight/libcec/archive/libcec-${version}.tar.gz"; - sha256 = "09xsw9hfymzl9fi9r2r8n5cxk80fc00x9drsy1r59pgbycqxvf5q"; + sha256 = "1713qs4nrynkcr3mgs1i7xj10lcyaxqipwiz9p0lfn4xrzjdd47g"; }; nativeBuildInputs = [ pkgconfig ]; diff --git a/pkgs/development/libraries/libdigidocpp/default.nix b/pkgs/development/libraries/libdigidocpp/default.nix index 3df820bc12631386b1e65290fe5e730b41ac8020..e3172c2fc1f8d2e7a8892a181e5c0e10c90941f1 100644 --- a/pkgs/development/libraries/libdigidocpp/default.nix +++ b/pkgs/development/libraries/libdigidocpp/default.nix @@ -2,12 +2,12 @@ , xercesc, xml-security-c, pkgconfig, xsd, zlib, xalanc, xxd }: stdenv.mkDerivation rec { - version = "3.13.6"; + version = "3.13.7"; name = "libdigidocpp-${version}"; src = fetchurl { url = "https://github.com/open-eid/libdigidocpp/releases/download/v${version}/libdigidocpp-${version}.tar.gz"; - sha256 = "1sdrj7664737k3kbnj2xrnilnx5ifj8hg42z8pxagb0j81x0pnqj"; + sha256 = "1d8yx8avijp55p53fz4pd4ihjz6nyap0g8dq23bwg33411mdiqff"; }; nativeBuildInputs = [ cmake pkgconfig xxd ]; diff --git a/pkgs/development/libraries/libdwarf/default.nix b/pkgs/development/libraries/libdwarf/default.nix index 649541e22627ed7dfd3a4f02c55ff501b033c929..edd84d5a9515c097f7dbaf0dbf36978c7fd72410 100644 --- a/pkgs/development/libraries/libdwarf/default.nix +++ b/pkgs/development/libraries/libdwarf/default.nix @@ -1,7 +1,7 @@ { stdenv, fetchurl, libelf }: let - version = "20180809"; + version = "20181024"; src = fetchurl { url = "https://www.prevanders.net/libdwarf-${version}.tar.gz"; # Upstream displays this hash broken into three parts: diff --git a/pkgs/development/libraries/libestr/default.nix b/pkgs/development/libraries/libestr/default.nix index 96de7eb7b3c2d487720111512dd1e7ade9bdfb9b..df67b849cd3fd55080834473d8ba162544faa51c 100644 --- a/pkgs/development/libraries/libestr/default.nix +++ b/pkgs/development/libraries/libestr/default.nix @@ -1,11 +1,11 @@ { stdenv, fetchurl }: stdenv.mkDerivation rec { - name = "libestr-0.1.10"; + name = "libestr-0.1.11"; src = fetchurl { url = "http://libestr.adiscon.com/files/download/${name}.tar.gz"; - sha256 = "0g3hmh3wxgjbn5g6cgy2l0ja806jd0ayp22bahcds3kmdq95wrdx"; + sha256 = "0910ifzcs8kpd3srrr4fvbacgh2zrc6yn7i4rwfj6jpzhlkjnqs6"; }; meta = with stdenv.lib; { diff --git a/pkgs/development/libraries/libibverbs/default.nix b/pkgs/development/libraries/libibverbs/default.nix deleted file mode 100644 index 2243f832b7a6b20a82f7fb89cd010d57ee0e9807..0000000000000000000000000000000000000000 --- a/pkgs/development/libraries/libibverbs/default.nix +++ /dev/null @@ -1,79 +0,0 @@ -{ stdenv, fetchurl }: - -let - - verbs = rec { - version = "1.1.8"; - name = "libibverbs-${version}"; - url = "http://downloads.openfabrics.org/verbs/${name}.tar.gz"; - sha256 = "13w2j5lrrqxxxvhpxbqb70x7wy0h8g329inzgfrvqv8ykrknwxkw"; - }; - - drivers = { - libmlx4 = rec { - version = "1.0.6"; - name = "libmlx4-${version}"; - url = "http://downloads.openfabrics.org/mlx4/${name}.tar.gz"; - sha256 = "f680ecbb60b01ad893490c158b4ce8028a3014bb8194c2754df508d53aa848a8"; - }; - libmthca = rec { - version = "1.0.6"; - name = "libmthca-${version}"; - url = "http://downloads.openfabrics.org/mthca/${name}.tar.gz"; - sha256 = "cc8ea3091135d68233d53004e82b5b510009c821820494a3624e89e0bdfc855c"; - }; - }; - -in stdenv.mkDerivation rec { - - inherit (verbs) name version ; - - srcs = [ - ( fetchurl { inherit (verbs) url sha256 ; } ) - ( fetchurl { inherit (drivers.libmlx4) url sha256 ; } ) - ( fetchurl { inherit (drivers.libmthca) url sha256 ; } ) - ]; - - sourceRoot = name; - - # Install userspace drivers - postInstall = '' - for dir in ${drivers.libmlx4.name} ${drivers.libmthca.name} ; do - cd ../$dir - export NIX_CFLAGS_COMPILE="$NIX_CFLAGS_COMPILE -I$out/include" - export NIX_LDFLAGS="-rpath $out/lib $NIX_LDFLAGS -L$out/lib" - ./configure $configureFlags - make -j$NIX_BUILD_CORES - make install - done - - mkdir -p $out/lib/pkgconfig - cat >$out/lib/pkgconfig/ibverbs.pc <$out/lib/pkgconfig/rdmacm.pc <> include/atlas_cacheedge.h - echo '#define CacheEdge ${cacheEdge}' >> include/atlas_tcacheedge.h - fi - ''; - - doCheck = true; - - postInstall = '' - # Avoid name collision with the real lapack (ATLAS only builds a partial - # lapack unless withLapack = true). - if ${if withLapack then "false" else "true"}; then - mv $out/lib/liblapack.a $out/lib/liblapack_atlas.a - fi - ''; - - # 1. /buildATLAS/build/bin/ATLrun.sh: multiple segfaults. - # 2. "atlas does its own parallel builds" - enableParallelBuilding = false; - - meta = { - homepage = http://math-atlas.sourceforge.net/; - description = "Automatically Tuned Linear Algebra Software (ATLAS)"; - license = stdenv.lib.licenses.bsd3; - broken = stdenv.isDarwin; # test when updating to >=3.10.3 - platforms = stdenv.lib.platforms.unix; - - longDescription = '' - The ATLAS (Automatically Tuned Linear Algebra Software) project is an - ongoing research effort focusing on applying empirical techniques in - order to provide portable performance. At present, it provides C and - Fortran77 interfaces to a portably efficient BLAS implementation, as well - as a few routines from LAPACK. - ''; - - maintainers = with stdenv.lib.maintainers; [ ttuegel ]; - }; -} diff --git a/pkgs/development/libraries/science/math/atlas/disable-timing-accuracy-check.patch b/pkgs/development/libraries/science/math/atlas/disable-timing-accuracy-check.patch deleted file mode 100644 index ddacc742d142cf505a19b9064a3dab3c7064b37e..0000000000000000000000000000000000000000 --- a/pkgs/development/libraries/science/math/atlas/disable-timing-accuracy-check.patch +++ /dev/null @@ -1,22 +0,0 @@ -diff -ubr ATLAS-orig/CONFIG/src/config.c ATLAS/CONFIG/src/config.c ---- ATLAS-orig/CONFIG/src/config.c 2013-02-06 11:23:47.078036878 +0100 -+++ ATLAS/CONFIG/src/config.c 2013-02-06 11:24:16.481120888 +0100 -@@ -711,17 +711,7 @@ - - int ProbeCPUThrottle(int verb, char *targarg, enum OSTYPE OS, enum ASMDIA asmb) - { -- int i, iret; -- char *ln; -- i = strlen(targarg) + 22 + 12; -- ln = malloc(i*sizeof(char)); -- assert(ln); -- sprintf(ln, "%s -O %d -s %d -t", targarg, OS, asmb); -- iret = GetIntProbe(verb, ln, "arch", "CPU THROTTLE", 0); -- free(ln); -- if (iret) printf("CPU Throttling apparently enabled!\n"); -- else printf("Cannot detect CPU throttling.\n"); -- return(iret); -+ return 0; - } - - char *NewAppendedString_SFLAG(char *old, char *flag, char *str) diff --git a/pkgs/development/libraries/science/math/atlas/tmpdir.patch b/pkgs/development/libraries/science/math/atlas/tmpdir.patch deleted file mode 100644 index be571b94300c700b2386f82712d59579a06e355e..0000000000000000000000000000000000000000 --- a/pkgs/development/libraries/science/math/atlas/tmpdir.patch +++ /dev/null @@ -1,276 +0,0 @@ -diff --git a/CONFIG/ARCHS/negflt.c b/CONFIG/ARCHS/negflt.c -index e5b7871..d45e387 100644 ---- a/CONFIG/ARCHS/negflt.c -+++ b/CONFIG/ARCHS/negflt.c -@@ -239,7 +239,7 @@ void NegFile(char *fnam, int N, int *cols) - FILE *fpin, *fpout; - WORDS *wp0, *wp; - -- tnam = tmpnam(NULL); -+ tnam = tempnam(NULL, NULL); - fpin = fopen(fnam, "r"); - assert(fpin); - fpout = fopen(tnam, "w"); -diff --git a/CONFIG/include/atlas_sys.h b/CONFIG/include/atlas_sys.h -index b83a749..8902d38 100644 ---- a/CONFIG/include/atlas_sys.h -+++ b/CONFIG/include/atlas_sys.h -@@ -216,12 +216,13 @@ static char *ATL_fgets_CWS(char *sout, int *plen, FILE *fpin) - - static char *ATL_tmpnam(void) - { -- static char tnam[L_tmpnam]; -+ static char *tnam; - static char FirstTime=1; - if (FirstTime) - { - FirstTime = 0; -- assert(tmpnam(tnam)); -+ tnam = tempnam(NULL, NULL); -+ assert(tnam); - } - return(tnam); - } -diff --git a/bin/atlas_install.c b/bin/atlas_install.c -index 2753cbf..e49cc3e 100644 ---- a/bin/atlas_install.c -+++ b/bin/atlas_install.c -@@ -662,7 +662,8 @@ void GoToTown(int ARCHDEF, int L1DEF, int TuneLA) - { - const char TR[2] = {'N','T'}; - char prec[4] = {'d', 's', 'z', 'c'}, pre, upre, *typ; -- char ln[1024], tnam[256], ln2[512], ln3[512], fnam[128]; -+ char ln[1024], ln2[512], ln3[512], fnam[128]; -+ char *tnam; - char *mulinst, *peakstr, *peakstr2; - int nprec=4; - int iL1, lat, muladd, maused, latuse, lbnreg; -@@ -681,7 +682,7 @@ void GoToTown(int ARCHDEF, int L1DEF, int TuneLA) - fpsum = fopen("INSTALL_LOG/SUMMARY.LOG", "a"); - ATL_Cassert(fpsum, "OPENING INSTALL_LOG/SUMMARY.LOG", NULL); - -- ATL_Cassert(tmpnam(tnam), "GETTING TEMPFILE", NULL); -+ ATL_Cassert((tnam = tempnam(NULL, NULL)), "GETTING TEMPFILE", NULL); - - if (L1DEF) - { -diff --git a/bin/extract.c b/bin/extract.c -index 7a5a926..53fb8bf 100644 ---- a/bin/extract.c -+++ b/bin/extract.c -@@ -3378,7 +3378,7 @@ void PushProc0(EXTENV *EE, EXTPROC **basep, EXTPROC **myfuncs, char *ln) - pp->argnams = KillWord(wp, wp); - pp->nargs = CountWords(pp->argnams); - -- cp = tmpnam(NULL); -+ cp = tempnam(NULL, NULL); - if (cp == NULL) ExtErr(EE, "Out of tmpnams!!!"); - i = Wstrlen(cp) + 1; - pp->FileNam = malloc(i*sizeof(char)); -diff --git a/include/atlas_mvtesttime.h b/include/atlas_mvtesttime.h -index 9147fcb..ab6a99f 100644 ---- a/include/atlas_mvtesttime.h -+++ b/include/atlas_mvtesttime.h -@@ -105,14 +105,15 @@ static int MVKernelFailsTest - char ln[4096]; - char *sp; - int i, lda0; -- static char outnam[L_tmpnam]; -+ static char* outnam; - static int FirstTime=1; - - if (FirstTime) - { - - FirstTime = 0; -- assert(tmpnam(outnam)); -+ outnam = tempnam(NULL, NULL); -+ assert(outnam); - } - /* - * If the file is generated, call generator to create it -@@ -221,14 +222,15 @@ static double TimeMVKernel - char ln[2048], resf[256], *sp; - double *dp, mf; - int i, align = pre2size(pre); -- static char outnam[L_tmpnam]; -+ static char* outnam; - static int FirstTime=1; - - if (FirstTime) - { - - FirstTime = 0; -- assert(tmpnam(outnam)); -+ outnam = tempnam(NULL, NULL); -+ assert(outnam); - } - /* - * If the file is generated, call generator to create it -diff --git a/include/atlas_r1testtime.h b/include/atlas_r1testtime.h -index b33213a..f27ee25 100644 ---- a/include/atlas_r1testtime.h -+++ b/include/atlas_r1testtime.h -@@ -76,14 +76,15 @@ static int R1KernelFailsTest - char ln[4096]; - char *sp; - int i, lda0; -- static char outnam[L_tmpnam]; -+ static char* outnam; - static int FirstTime=1; - - if (FirstTime) - { - - FirstTime = 0; -- assert(tmpnam(outnam)); -+ outnam = tempnam(NULL, NULL); -+ assert(outnam); - } - /* - * If the file is generated, call generator to create it -@@ -187,14 +188,15 @@ static double TimeR1Kernel - char ln[2048], resf[256], *sp; - double *dp, mf; - int i, align = pre2size(pre); -- static char outnam[L_tmpnam]; -+ static char* outnam; - static int FirstTime=1; - - if (FirstTime) - { - - FirstTime = 0; -- assert(tmpnam(outnam)); -+ outnam = tempnam(NULL, NULL); -+ assert(outnam); - } - /* - * If the file is generated, call generator to create it -diff --git a/include/atlas_r2testtime.h b/include/atlas_r2testtime.h -index facc66d..c638dce 100644 ---- a/include/atlas_r2testtime.h -+++ b/include/atlas_r2testtime.h -@@ -76,14 +76,15 @@ static int R2KernelFailsTest - char ln[4096]; - char *sp; - int i, lda0; -- static char outnam[L_tmpnam]; -+ static char* outnam; - static int FirstTime=1; - - if (FirstTime) - { - - FirstTime = 0; -- assert(tmpnam(outnam)); -+ outnam = tempnam(NULL, NULL); -+ assert(outnam); - } - /* - * If the file is generated, call generator to create it -@@ -187,14 +188,15 @@ static double TimeR2Kernel - char ln[2048], resf[256], *sp; - double *dp, mf; - int i, align = pre2size(pre); -- static char outnam[L_tmpnam]; -+ static char* outnam; - static int FirstTime=1; - - if (FirstTime) - { - - FirstTime = 0; -- assert(tmpnam(outnam)); -+ outnam = tempnam(NULL, NULL); -+ assert(outnam); - } - /* - * If the file is generated, call generator to create it -diff --git a/include/atlas_sys.h b/include/atlas_sys.h -index b83a749..b3f88d2 100644 ---- a/include/atlas_sys.h -+++ b/include/atlas_sys.h -@@ -216,12 +216,13 @@ static char *ATL_fgets_CWS(char *sout, int *plen, FILE *fpin) - - static char *ATL_tmpnam(void) - { -- static char tnam[L_tmpnam]; -+ static char* tnam; - static char FirstTime=1; - if (FirstTime) - { - FirstTime = 0; -- assert(tmpnam(tnam)); -+ tnam = tempnam(NULL, NULL); -+ assert(tnam); - } - return(tnam); - } -diff --git a/tune/blas/gemm/usercomb.c b/tune/blas/gemm/usercomb.c -index 59a7cd4..eb3eb05 100644 ---- a/tune/blas/gemm/usercomb.c -+++ b/tune/blas/gemm/usercomb.c -@@ -138,11 +138,13 @@ int GetUserCase(char pre, int icase, int *iflag, int *mb, int *nb, int *kb, - - void CombineFiles(char *fout, int nfiles, char **fnams) - { -- char tnam[256], ln[512]; -+ char ln[512]; -+ char *tnam; - int i, j, n, nn; - FILE *fpout, *fpin; - -- assert(tmpnam(tnam)); -+ tnam = tempnam(NULL, NULL); -+ assert(tnam); - for (n=i=0; i < nfiles; i++) n += NumUserCases0(fnams[i]); - - fpout = fopen(tnam, "w"); -diff --git a/tune/blas/gemm/userflag.c b/tune/blas/gemm/userflag.c -index c3983e4..b7dd70b 100644 ---- a/tune/blas/gemm/userflag.c -+++ b/tune/blas/gemm/userflag.c -@@ -139,8 +139,8 @@ int GetUserCase(char pre, int icase, int *iflag, int *mb, int *nb, int *kb, - - void GoGetThem(char *infile, char *outfile) - { -- char ln[512], ln2[512], tnam[256], MCC[256], MMFLAGS[256]; -- char *chkfile = "FlagCheck.c", *sp, *sp2; -+ char ln[512], ln2[512], MCC[256], MMFLAGS[256]; -+ char *chkfile = "FlagCheck.c", *sp, *sp2, *tnam; - FILE *fpin, *fpout; - int i, j, n, nmin=0, good; - int wass; -@@ -152,7 +152,8 @@ void GoGetThem(char *infile, char *outfile) - n = NumUserCases0(infile); - fpin = fopen(infile, "r"); - assert(fpin); -- assert(tmpnam(tnam)); -+ tnam = tempnam(NULL, NULL); -+ assert(tnam); - fpout = fopen(tnam, "w"); - assert(fpout); - assert(fgets(ln, 512, fpin)); -diff --git a/tune/sysinfo/emit_buildinfo.c b/tune/sysinfo/emit_buildinfo.c -index 309c06a..3feaea7 100644 ---- a/tune/sysinfo/emit_buildinfo.c -+++ b/tune/sysinfo/emit_buildinfo.c -@@ -41,14 +41,15 @@ static char SMCVERS[LNLEN], DMCVERS[LNLEN], SKCVERS[LNLEN], DKCVERS[LNLEN]; - static char UNAM[64], DATE[128]; - char *CmndResults(char *cmnd) - { -- static char tnam[128]; -+ static char* tnam; - static int FirstTime=1; - char ln[512]; - - if (FirstTime) - { - FirstTime = 0; -- assert(tmpnam(tnam)); -+ tnam = tempnam(NULL, NULL); -+ assert(tnam); - } - sprintf(ln, "%s > %s\n", cmnd, tnam); - fprintf(stderr, "system: %s", ln); diff --git a/pkgs/development/libraries/science/math/cudnn/default.nix b/pkgs/development/libraries/science/math/cudnn/default.nix index c89e9e4296cfdac4db573f4a7eec38f3323cee15..b41469c215e27f10504a72b9c950c4dfbfcbb8b1 100644 --- a/pkgs/development/libraries/science/math/cudnn/default.nix +++ b/pkgs/development/libraries/science/math/cudnn/default.nix @@ -1,13 +1,11 @@ -{ callPackage, cudatoolkit_7, cudatoolkit_7_5, cudatoolkit_8, cudatoolkit_9_0, cudatoolkit_9 }: +{ callPackage, cudatoolkit_7, cudatoolkit_7_5, cudatoolkit_8, cudatoolkit_9_0, cudatoolkit_9_1, cudatoolkit_9_2, cudatoolkit_10_0 }: let generic = args: callPackage (import ./generic.nix (removeAttrs args ["cudatoolkit"])) { inherit (args) cudatoolkit; }; -in - -{ +in rec { cudnn_cudatoolkit_7 = generic rec { # Old URL is v4 instead of v4.0 for some reason... version = "4"; @@ -38,16 +36,34 @@ in }; cudnn_cudatoolkit_9_0 = generic rec { - version = "7.0.5"; + version = "7.3.0"; cudatoolkit = cudatoolkit_9_0; - srcName = "cudnn-${cudatoolkit.majorVersion}-linux-x64-v7.tgz"; - sha256 = "03mbv4m5lhwnc181xz8li067pjzzhxqbxgnrfc68dffm8xj0fghs"; + srcName = "cudnn-${cudatoolkit.majorVersion}-linux-x64-v7.3.0.29.tgz"; + sha256 = "16z4vgbcmbayk4hppz0xshgs3g07blkp4j25cxcjqyrczx1r0gs0"; }; - cudnn_cudatoolkit_9 = generic rec { - version = "7.0.5"; - cudatoolkit = cudatoolkit_9; - srcName = "cudnn-${cudatoolkit.majorVersion}-linux-x64-v7.tgz"; - sha256 = "1rfmdd2v47p83fm3sfyvik31gci0q17qs6kjng6mvcsd6akmvb8y"; + cudnn_cudatoolkit_9_1 = generic rec { + version = "7.1.3"; + cudatoolkit = cudatoolkit_9_1; + srcName = "cudnn-${cudatoolkit.majorVersion}-linux-x64-v7.1.tgz"; + sha256 = "0a0237gpr0p63s92njai0xvxmkbailzgfsvh7n9fnz0njhvnsqfx"; }; + + cudnn_cudatoolkit_9_2 = generic rec { + version = "7.2.1"; + cudatoolkit = cudatoolkit_9_2; + srcName = "cudnn-${cudatoolkit.majorVersion}-linux-x64-v7.2.1.38.tgz"; + sha256 = "1sf215wm6zgr17gs6sxfhw61b7a0qmcxiwhgy1b4nqdyxpqgay1y"; + }; + + cudnn_cudatoolkit_9 = cudnn_cudatoolkit_9_2; + + cudnn_cudatoolkit_10_0 = generic rec { + version = "7.3.1"; + cudatoolkit = cudatoolkit_10_0; + srcName = "cudnn-${cudatoolkit.majorVersion}-linux-x64-v7.3.1.20.tgz"; + sha256 = "1yp35mng4ym40g5rqp63dcpa6jg4q1pnjkspnhlakzzdy8is65af"; + }; + + cudnn_cudatoolkit_10 = cudnn_cudatoolkit_10_0; } diff --git a/pkgs/development/libraries/science/math/liblapack/default.nix b/pkgs/development/libraries/science/math/liblapack/default.nix index e6af2251b1f1880c6d54ff3ad1712169b0fa4b92..38260f63d91537e5cd9fdc05dfa02895202eaa3d 100644 --- a/pkgs/development/libraries/science/math/liblapack/default.nix +++ b/pkgs/development/libraries/science/math/liblapack/default.nix @@ -4,12 +4,9 @@ gfortran, cmake, python2, - atlas ? null, shared ? false }: let - atlasMaybeShared = if atlas != null then atlas.override { inherit shared; } - else null; usedLibExtension = if shared then ".so" else ".a"; inherit (stdenv.lib) optional optionals; version = "3.8.0"; @@ -22,7 +19,6 @@ stdenv.mkDerivation rec { sha256 = "1xmwi2mqmipvg950gb0rhgprcps8gy8sjm8ic9rgy2qjlv22rcny"; }; - propagatedBuildInputs = [ atlasMaybeShared ]; buildInputs = [ gfortran cmake ]; nativeBuildInputs = [ python2 ]; @@ -30,15 +26,7 @@ stdenv.mkDerivation rec { "-DUSE_OPTIMIZED_BLAS=ON" "-DCMAKE_Fortran_FLAGS=-fPIC" ] - ++ (optionals (atlas != null) [ - "-DBLAS_ATLAS_f77blas_LIBRARY=${atlasMaybeShared}/lib/libf77blas${usedLibExtension}" - "-DBLAS_ATLAS_atlas_LIBRARY=${atlasMaybeShared}/lib/libatlas${usedLibExtension}" - ]) - ++ (optional shared "-DBUILD_SHARED_LIBS=ON") - # If we're on darwin, CMake will automatically detect impure paths. This switch - # prevents that. - ++ (optional stdenv.isDarwin "-DCMAKE_OSX_SYSROOT:PATH=''") - ; + ++ (optional shared "-DBUILD_SHARED_LIBS=ON"); doCheck = ! shared; @@ -48,10 +36,6 @@ stdenv.mkDerivation rec { enableParallelBuilding = true; - passthru = { - blas = atlas; - }; - meta = with stdenv.lib; { inherit version; description = "Linear Algebra PACKage"; diff --git a/pkgs/development/libraries/science/math/scalapack/default.nix b/pkgs/development/libraries/science/math/scalapack/default.nix index 83e177c66c182def778c2bbeb2d9b6c592c36986..c5930fdb6841054e987b62b34ee878cd878e165b 100644 --- a/pkgs/development/libraries/science/math/scalapack/default.nix +++ b/pkgs/development/libraries/science/math/scalapack/default.nix @@ -1,11 +1,7 @@ -{ stdenv -, fetchurl -, gfortran -, cmake -, blas -, liblapack -, mpi -}: +{ stdenv, fetchurl, cmake, openssh +, gfortran, mpi, openblasCompat +} : + stdenv.mkDerivation rec { name = "scalapack-${version}"; @@ -16,13 +12,39 @@ stdenv.mkDerivation rec { sha256 = "0p1r61ss1fq0bs8ynnx7xq4wwsdvs32ljvwjnx6yxr8gd6pawx0c"; }; - buildInputs = [ cmake mpi liblapack blas gfortran ]; + nativeBuildInputs = [ cmake openssh ]; + buildInputs = [ mpi gfortran openblasCompat ]; + + enableParallelBuilding = true; + + doCheck = true; + + preConfigure = '' + cmakeFlagsArray+=( + -DBUILD_SHARED_LIBS=ON -DBUILD_STATIC_LIBS=OFF + -DLAPACK_LIBRARIES="-lopenblas" + -DBLAS_LIBRARIES="-lopenblas" + ) + ''; + + checkPhase = '' + # make sure the test starts even if we have less than 4 cores + export OMPI_MCA_rmaps_base_oversubscribe=1 + + # Run single threaded + export OMP_NUM_THREADS=1 + + export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:`pwd`/lib + export CTEST_OUTPUT_ON_FAILURE=1 + + make test + ''; meta = with stdenv.lib; { homepage = http://www.netlib.org/scalapack/; description = "Library of high-performance linear algebra routines for parallel distributed memory machines"; - license = licenses.bsdOriginal; - platforms = platforms.all; + license = licenses.bsd3; + platforms = platforms.linux; maintainers = [ maintainers.costrouc ]; }; diff --git a/pkgs/development/libraries/simgear/default.nix b/pkgs/development/libraries/simgear/default.nix index 28b96d17aa602e1d8e4bd7c89e48b5a959fb580f..196fb59bb17158d50201a7e02bf37db5709ec300 100644 --- a/pkgs/development/libraries/simgear/default.nix +++ b/pkgs/development/libraries/simgear/default.nix @@ -6,12 +6,12 @@ stdenv.mkDerivation rec { name = "simgear-${version}"; - version = "2017.3.1"; - shortVersion = "2017.3"; + version = "2018.2.2"; + shortVersion = "2018.2"; src = fetchurl { url = "mirror://sourceforge/flightgear/release-${shortVersion}/${name}.tar.bz2"; - sha256 = "1x71wvycs2bjgmmacswgk6091p65p46fr40mr7f4kcipnx88bq0f"; + sha256 = "f61576bc36aae36f350154749df1cee396763604c06b8a71c4b50452d9151ce5"; }; buildInputs = [ plib freeglut xproto libX11 libXext xextproto libXi inputproto @@ -28,4 +28,3 @@ stdenv.mkDerivation rec { license = licenses.lgpl2; }; } - diff --git a/pkgs/development/libraries/talloc/default.nix b/pkgs/development/libraries/talloc/default.nix index 77c3c6458ade03d45135f07fb590f56dec5fa8f5..7c758d298357ae8dc7afcf42c621c499f12ca870 100644 --- a/pkgs/development/libraries/talloc/default.nix +++ b/pkgs/development/libraries/talloc/default.nix @@ -1,5 +1,5 @@ { stdenv, fetchurl, python, pkgconfig, readline, libxslt -, docbook_xsl, docbook_xml_dtd_42 +, docbook_xsl, docbook_xml_dtd_42, fixDarwinDylibNames }: stdenv.mkDerivation rec { @@ -10,13 +10,13 @@ stdenv.mkDerivation rec { sha256 = "1kk76dyav41ip7ddbbf04yfydb4jvywzi2ps0z2vla56aqkn11di"; }; - nativeBuildInputs = [ pkgconfig ]; + nativeBuildInputs = [ pkgconfig fixDarwinDylibNames ]; buildInputs = [ python readline libxslt docbook_xsl docbook_xml_dtd_42 ]; - preConfigure = '' - sed -i 's,#!/usr/bin/env python,#!${python}/bin/python,g' buildtools/bin/waf + prePatch = '' + patchShebangs buildtools/bin/waf ''; configureFlags = [ diff --git a/pkgs/development/libraries/theft/default.nix b/pkgs/development/libraries/theft/default.nix index 2a1180533cea809f169c38c72a290fbcae14c9e1..881f9c033a386059a4efc8d330b2b4e523b60289 100644 --- a/pkgs/development/libraries/theft/default.nix +++ b/pkgs/development/libraries/theft/default.nix @@ -1,14 +1,14 @@ { stdenv, fetchFromGitHub }: stdenv.mkDerivation rec { - version = "0.4.3"; + version = "0.4.4"; name = "theft-${version}"; src = fetchFromGitHub { owner = "silentbicycle"; repo = "theft"; rev = "v${version}"; - sha256 = "1ibh8np12lafnrsrvjbbzlyq45zq654939x0y22vdnc6s8dpbhw4"; + sha256 = "1csdhnb10k7vsyd44vjpg430nf6a909wj8af2zawdkbvnxn5wxc4"; }; preConfigure = "patchShebangs ./scripts/mk_bits_lut"; diff --git a/pkgs/development/libraries/v8/plv8_6_x.nix b/pkgs/development/libraries/v8/plv8_6_x.nix new file mode 100644 index 0000000000000000000000000000000000000000..8d2276def70533ee892c6355b6b4adffa6111dfe --- /dev/null +++ b/pkgs/development/libraries/v8/plv8_6_x.nix @@ -0,0 +1,187 @@ +# NOTE: this expression is NOT exported from the top-level of all-packages.nix, +# it is exclusively used by the 'plv8' PostgreSQL extension, which requires a +# very exact version. + +{ stdenv, lib, fetchgit, fetchFromGitHub, gn, ninja, python, glib, pkgconfig +, doCheck ? false +, snapshot ? true +}: + +let + arch = if stdenv.isAarch32 + then if stdenv.is64bit + then"arm64" + else "arm" + else if stdenv.is64bit + then"x64" + else "ia32"; + git_url = "https://chromium.googlesource.com"; + + # This data is from the DEPS file in the root of a V8 checkout + deps = { + "base/trace_event/common" = fetchgit { + url = "${git_url}/chromium/src/base/trace_event/common.git"; + rev = "0e9a47d74970bee1bbfc063c47215406f8918699"; + sha256 = "07rbzrlscp8adh4z86yl5jxdnvgkc3xs950xldpk318wf9i3bh6c"; + }; + "build" = fetchgit { + url = "${git_url}/chromium/src/build.git"; + rev = "9338ce52d0b9bcef34c38285fbd5023b62739fac"; + sha256 = "1s2sa8dy3waidsirjylc82ggb18l1108bczjc8z0v4ywyj4k0cvh"; + }; + "buildtools" = fetchgit { + url = "${git_url}/chromium/buildtools.git"; + rev = "505de88083136eefd056e5ee4ca0f01fe9b33de8"; + sha256 = "0vj216nhb803bggsl0hnyagj8njrm96pn8sim6xcnqb7nhz1vabw"; + }; + "test/benchmarks/data" = fetchgit { + url = "${git_url}/v8/deps/third_party/benchmarks.git"; + rev = "05d7188267b4560491ff9155c5ee13e207ecd65f"; + sha256 = "0ad2ay14bn67d61ks4dmzadfnhkj9bw28r4yjdjjyzck7qbnzchl"; + }; + "test/mozilla/data" = fetchgit { + url = "${git_url}/v8/deps/third_party/mozilla-tests.git"; + rev = "f6c578a10ea707b1a8ab0b88943fe5115ce2b9be"; + sha256 = "0rfdan76yfawqxbwwb35aa57b723j3z9fx5a2w16nls02yk2kqyn"; + }; + "test/test262/data" = fetchgit { + url = "${git_url}/external/github.com/tc39/test262.git"; + rev = "5d4c667b271a9b39d0de73aef5ffe6879c6f8811"; + sha256 = "0q9iwb2nkybf9np95wgf5m372aw2lhx9wlsw41a2a80kbkvb2kqg"; + }; + "test/test262/harness" = fetchgit { + url = "${git_url}/external/github.com/test262-utils/test262-harness-py.git"; + rev = "0f2acdd882c84cff43b9d60df7574a1901e2cdcd"; + sha256 = "00brj5avp43yamc92kinba2mg3a2x1rcd7wnm7z093l73idprvkp"; + }; + "test/wasm-js" = fetchgit { + url = "${git_url}/external/github.com/WebAssembly/spec.git"; + rev = "a7e226a92e660a3d5413cfea4269824f513259d2"; + sha256 = "0z3aybj3ykajwh2bv5fwd6pwqjjsq8dnwrqc2wncb6r9xcjwbgxp"; + }; + "testing/gtest" = fetchgit { + url = "${git_url}/external/github.com/google/googletest.git"; + rev = "6f8a66431cb592dad629028a50b3dd418a408c87"; + sha256 = "0bdba2lr6pg15bla9600zg0r0vm4lnrx0wqz84p376wfdxra24vw"; + }; + "third_party/icu" = fetchgit { + url = "${git_url}/chromium/deps/icu.git"; + rev = "741688ebf328da9adc52505248bf4e2ef868722c"; + sha256 = "02ifm18qjlrkn5nm2rxkf9yz9bdlyq7c65jfjndv63vi1drqh1r9"; + }; + "third_party/instrumented_libraries" = fetchgit { + url = "${git_url}/chromium/src/third_party/instrumented_libraries.git"; + rev = "28417458ac4dc79f68915079d0f283f682504cc0"; + sha256 = "1qf5c2946n37p843yriv7xawi6ss6samabghq43s49cgd4wq8dc3"; + }; + "third_party/jinja2" = fetchgit { + url = "${git_url}/chromium/src/third_party/jinja2.git"; + rev = "d34383206fa42d52faa10bb9931d6d538f3a57e0"; + sha256 = "0d9hyw0bvp3p0dbwy833cm9vdqxcam0qbm9jc561ynphddxlkmgd"; + }; + "third_party/markupsafe" = fetchgit { + url = "${git_url}/chromium/src/third_party/markupsafe.git"; + rev = "8f45f5cfa0009d2a70589bcda0349b8cb2b72783"; + sha256 = "168ppjmicfdh4i1l0l25s86mdbrz9fgxmiq1rx33x79mph41scfz"; + }; + "tools/clang" = fetchgit { + url = "${git_url}/chromium/src/tools/clang.git"; + rev = "8688d267571de76a56746324dcc249bf4232b85a"; + sha256 = "0krq4zz1vnwp064bm517gwr2napy18wyccdh8w5s4qgkjwwxd63s"; + }; + "tools/gyp" = fetchgit { + url = "${git_url}/external/gyp.git"; + rev = "d61a9397e668fa9843c4aa7da9e79460fe590bfb"; + sha256 = "1z081h72mjy285jb1kj5xd0pb4p12n9blvsimsavyn3ldmswv0r0"; + }; + "tools/luci-go" = fetchgit { + url = "${git_url}/chromium/src/tools/luci-go.git"; + rev = "45a8a51fda92e123619a69e7644d9c64a320b0c1"; + sha256 = "0r7736gqk7r0i7ig0b5ib10d9q8a8xzsmc0f0fbkm9k78v847vpj"; + }; + "tools/swarming_client" = fetchgit { + url = "${git_url}/infra/luci/client-py.git"; + rev = "4bd9152f8a975d57c972c071dfb4ddf668e02200"; + sha256 = "03zk91gzvqv01g1vbl8d7h8al7vs4ymrrdc8ipg9wpq52yh65smh"; + }; + }; + +in + +stdenv.mkDerivation rec { + name = "v8-${version}"; + version = "6.4.388.40"; + + inherit doCheck; + + src = fetchFromGitHub { + owner = "v8"; + repo = "v8"; + rev = version; + sha256 = "1lq239cgqyidrynz8g3wbdv70ymzv6s0ppad8s219gb3jnizm16a"; + }; + + postUnpack = '' + ${lib.concatStringsSep "\n" ( + lib.mapAttrsToList (n: v: '' + mkdir -p $sourceRoot/${n} + cp -r ${v}/* $sourceRoot/${n} + '') deps)} + ''; + + prePatch = '' + # use our gn, not the bundled one + sed -i -e 's#gn_path = .*#gn_path = "${gn}/bin/gn"#' tools/mb/mb.py + + # disable tests + if [ "$doCheck" = "" ]; then sed -i -e '/"test:gn_all",/d' BUILD.gn; fi + + # disable sysroot usage + chmod u+w build/config build/config/sysroot.gni + sed -i build/config/sysroot.gni \ + -e '/use_sysroot =/ { s#\(use_sysroot =\).*#\1 false#; :a n; /current_cpu/ { s/^/#/; ba }; }' + + # patch shebangs (/usr/bin/env) + patchShebangs tools/dev/v8gen.py + ''; + + configurePhase = '' + tools/dev/v8gen.py -vv ${arch}.release -- \ + is_component_build=true \ + ${if snapshot then "v8_use_external_startup_data=false" else "v8_use_snapshot=false"} \ + is_clang=false \ + linux_use_bundled_binutils=false \ + treat_warnings_as_errors=false \ + use_custom_libcxx=false \ + use_custom_libcxx_for_host=false + ''; + + nativeBuildInputs = [ gn ninja pkgconfig ]; + buildInputs = [ python glib ]; + + buildPhase = '' + ninja -C out.gn/${arch}.release/ + ''; + + enableParallelBuilding = true; + + installPhase = '' + install -vD out.gn/${arch}.release/d8 "$out/bin/d8" + install -vD out.gn/${arch}.release/mksnapshot "$out/bin/mksnapshot" + mkdir -p "$out/lib" + for f in libicui18n.so libicuuc.so libv8_libbase.so libv8_libplatform.so libv8.so; do + install -vD out.gn/${arch}.release/$f "$out/lib/$f" + done + install -vD out.gn/${arch}.release/icudtl.dat "$out/lib/icudtl.dat" + mkdir -p "$out/include" + cp -vr include/*.h "$out/include" + cp -vr include/libplatform "$out/include" + ''; + + meta = with lib; { + description = "Google's open source JavaScript engine"; + maintainers = with maintainers; [ cstrahan proglodyte ]; + platforms = platforms.linux; + license = licenses.bsd3; + }; +} diff --git a/pkgs/development/libraries/vtk/default.nix b/pkgs/development/libraries/vtk/default.nix index b85d76640cf066cf7820ea1552653de3318503b2..afd29aeb00631a55d5ddc6e1b5ebf1d1daa92be3 100644 --- a/pkgs/development/libraries/vtk/default.nix +++ b/pkgs/development/libraries/vtk/default.nix @@ -41,8 +41,6 @@ stdenv.mkDerivation rec { cmakeFlags = [ "-DCMAKE_C_FLAGS=-fPIC" "-DCMAKE_CXX_FLAGS=-fPIC" ] ++ optional (qtLib != null) [ "-DVTK_USE_QT:BOOL=ON" ] ++ optional stdenv.isDarwin [ "-DBUILD_TESTING:BOOL=OFF" - "-DCMAKE_OSX_SYSROOT=" - "-DCMAKE_OSX_DEPLOYMENT_TARGET=" "-DOPENGL_INCLUDE_DIR=${OpenGL}/Library/Frameworks" ]; postPatch = stdenv.lib.optionalString stdenv.isDarwin '' diff --git a/pkgs/development/libraries/wcslib/default.nix b/pkgs/development/libraries/wcslib/default.nix index 636021f1368e6a1e4217b0b9a1a1d9808c09d17d..187eed6ae83ae7236edfbcceb1a9c445714ccd59 100644 --- a/pkgs/development/libraries/wcslib/default.nix +++ b/pkgs/development/libraries/wcslib/default.nix @@ -1,14 +1,14 @@ { fetchurl, stdenv, flex }: stdenv.mkDerivation rec { - version = "5.20"; + version = "6.2"; name = "wcslib-${version}"; buildInputs = [ flex ]; src = fetchurl { url = "ftp://ftp.atnf.csiro.au/pub/software/wcslib/${name}.tar.bz2"; - sha256 ="1c8g9kv4dxrnawnqi4spi2p10s2xs7x75pdfxhbqxgcc97dkgh0b"; + sha256 ="01fqckazhbfqqhyr0wd9vcks1m2afmsh83l981alxg2r54jgwkdv"; }; prePatch = '' diff --git a/pkgs/development/libraries/webkitgtk/2.22.nix b/pkgs/development/libraries/webkitgtk/2.22.nix index 7eae5819daf166f740fff678b49ee170aa9a5a50..71b3dc24fe21bd424bc80e69e89ab8ba2f67181b 100644 --- a/pkgs/development/libraries/webkitgtk/2.22.nix +++ b/pkgs/development/libraries/webkitgtk/2.22.nix @@ -15,7 +15,7 @@ assert stdenv.isDarwin -> !enableGtk2Plugins; with stdenv.lib; stdenv.mkDerivation rec { name = "webkitgtk-${version}"; - version = "2.22.2"; + version = "2.22.3"; meta = { description = "Web content rendering engine, GTK+ port"; @@ -28,7 +28,7 @@ stdenv.mkDerivation rec { src = fetchurl { url = "https://webkitgtk.org/releases/${name}.tar.xz"; - sha256 = "1flrbr8pzbrlwv09b4pmgh6vklw7jghd2lgrhcb72vl9s7a8fm1l"; + sha256 = "0wnddhm2bihmmkmi919lyxskvjk2wrzx6azkiypyjfwm08lm9zcx"; }; patches = optionals stdenv.isDarwin [ diff --git a/pkgs/development/libraries/xapian/default.nix b/pkgs/development/libraries/xapian/default.nix index f93f7ed87460f1d25742306a7e3cb21f89802664..2d7289ca6647462ddafcf6b30f9e2391b19b396e 100644 --- a/pkgs/development/libraries/xapian/default.nix +++ b/pkgs/development/libraries/xapian/default.nix @@ -11,13 +11,6 @@ let inherit sha256; }; - patches = stdenv.lib.optional (version == "1.4.7") [ - # fix notmuch build, see https://notmuchmail.org/faq/#index12h2 - # cannot fetchpatch this because base directory differs - # TODO: remove on next xapian update - ./fix-notmuch-tagging.patch - ]; - outputs = [ "out" "man" "doc" ]; buildInputs = [ libuuid zlib ]; @@ -43,5 +36,5 @@ let in { # xapian-ruby needs 1.2.22 as of 2017-05-06 xapian_1_2_22 = generic "1.2.22" "0zsji22n0s7cdnbgj0kpil05a6bgm5cfv0mvx12d8ydg7z58g6r6"; - xapian_1_4 = generic "1.4.7" "1lxmlds3v5s1gng9nk1rvmln1zcksrw5ds509y0glylwch5qmw0k"; + xapian_1_4 = generic "1.4.9" "1k7m7m9jld96k16ansfw2w3c354pvd8ibhnrb6dw012g06fw7sfd"; } diff --git a/pkgs/development/libraries/xapian/fix-notmuch-tagging.patch b/pkgs/development/libraries/xapian/fix-notmuch-tagging.patch deleted file mode 100644 index 6deae76d2aa7928c694e8360c1b4b98be4b62421..0000000000000000000000000000000000000000 --- a/pkgs/development/libraries/xapian/fix-notmuch-tagging.patch +++ /dev/null @@ -1,31 +0,0 @@ -From f9e6f45b1c8f66bca8a3387f371b20d434b23a7d Mon Sep 17 00:00:00 2001 -From: Olly Betts -Date: Thu, 26 Jul 2018 17:26:52 +1200 -Subject: [PATCH 1/1] Revert "Enable open_nearby_postlist for writable - databases" - -The amended check isn't conservative enough as there may be postlist -changes in the inverter while the table is unmodified. This breaks -testcase T150-tagging.sh in notmuch's testsuite, reported by David -Bremner. - -This reverts commit 5489fb2f838c0f0b0a593b4c17df282a93a1fe5a. ---- - xapian-core/backends/glass/glass_postlist.cc | 2 +- - 1 file changed, 1 insertion(+), 1 deletion(-) - -diff --git a/xapian-core/backends/glass/glass_postlist.cc b/xapian-core/backends/glass/glass_postlist.cc -index 80e578b85..a47f14a68 100644 ---- a/backends/glass/glass_postlist.cc -+++ b/backends/glass/glass_postlist.cc -@@ -759,7 +759,7 @@ GlassPostList::open_nearby_postlist(const std::string & term_, - (void)need_pos; - if (term_.empty()) - RETURN(NULL); -- if (!this_db.get() || this_db->postlist_table.is_modified()) -+ if (!this_db.get() || this_db->postlist_table.is_writable()) - RETURN(NULL); - RETURN(new GlassPostList(this_db, term_, cursor->clone())); - } --- -2.11.0 diff --git a/pkgs/development/misc/avr/binutils/default.nix b/pkgs/development/misc/avr/binutils/default.nix deleted file mode 100644 index 83ba93e63b765cc98ab5ce4ddde86ac21f7b7fd2..0000000000000000000000000000000000000000 --- a/pkgs/development/misc/avr/binutils/default.nix +++ /dev/null @@ -1,22 +0,0 @@ -{ stdenv, fetchurl }: - -let - version = "2.31.1"; -in -stdenv.mkDerivation { - name = "avr-binutils-${version}"; - - src = fetchurl { - url = "mirror://gnu/binutils/binutils-${version}.tar.bz2"; - sha256 = "1l34hn1zkmhr1wcrgf0d4z7r3najxnw3cx2y2fk7v55zjlk3ik7z"; - }; - configureFlags = [ "--target=avr" "--enable-languages=c,c++" ]; - - meta = with stdenv.lib; { - description = "the GNU Binutils for AVR microcontrollers"; - homepage = http://www.gnu.org/software/binutils/; - license = licenses.gpl3Plus; - platforms = platforms.unix; - maintainers = with maintainers; [ mguentner ]; - }; -} diff --git a/pkgs/development/misc/avr/gcc/avrbinutils-path.patch b/pkgs/development/misc/avr/gcc/avrbinutils-path.patch deleted file mode 100644 index f0ec21b7589ff780bf8b1633c163ac700d55bb8b..0000000000000000000000000000000000000000 --- a/pkgs/development/misc/avr/gcc/avrbinutils-path.patch +++ /dev/null @@ -1,15 +0,0 @@ -diff --git a/gcc/gcc-ar.c b/gcc/gcc-ar.c -index 838ebc2..3ac4ee7 100644 ---- a/gcc/gcc-ar.c -+++ b/gcc/gcc-ar.c -@@ -118,8 +118,8 @@ setup_prefixes (const char *exec_path) - dir_separator, NULL); - prefix_from_string (self_libexec_prefix, &target_path); - -- /* Add path as a last resort. */ -- prefix_from_env ("PATH", &path); -+ /* Add path to avrbinutils. */ -+ prefix_from_string ("@avrbinutils@/bin", &path); - } - - int diff --git a/pkgs/development/misc/avr/gcc/default.nix b/pkgs/development/misc/avr/gcc/default.nix deleted file mode 100644 index 5c9b56c991839fec10586c2721ff5edfc833b003..0000000000000000000000000000000000000000 --- a/pkgs/development/misc/avr/gcc/default.nix +++ /dev/null @@ -1,60 +0,0 @@ -{ stdenv, fetchurl, gmp, mpfr, libmpc, zlib, avrbinutils, texinfo }: - -let - version = "8.2.0"; -in -stdenv.mkDerivation { - - name = "avr-gcc-${version}"; - src = fetchurl { - url = "mirror://gcc/releases/gcc-${version}/gcc-${version}.tar.xz"; - sha256 = "10007smilswiiv2ymazr3b6x2i933c0ycxrr529zh4r6p823qv0r"; - }; - - patches = [ - ./avrbinutils-path.patch - ]; - - # avrbinutils-path.patch introduces a reference to @avrbinutils@, substitute - # it now. - postPatch = '' - substituteInPlace gcc/gcc-ar.c --subst-var-by avrbinutils ${avrbinutils} - ''; - - buildInputs = [ gmp mpfr libmpc zlib avrbinutils ]; - - nativeBuildInputs = [ texinfo ]; - - hardeningDisable = [ "format" ]; - - stripDebugList= [ "bin" "libexec" ]; - - enableParallelBuilding = true; - - configurePhase = '' - mkdir gcc-build - cd gcc-build - ../configure \ - --prefix=$out \ - --host=$CHOST \ - --build=$CHOST \ - --target=avr \ - --with-as=${avrbinutils}/bin/avr-as \ - --with-gnu-as \ - --with-gnu-ld \ - --with-ld=${avrbinutils}/bin/avr-ld \ - --with-system-zlib \ - --disable-install-libiberty \ - --disable-nls \ - --disable-libssp \ - --with-dwarf2 \ - --enable-languages=c,c++''; - - meta = with stdenv.lib; { - description = "GNU Compiler Collection, version ${version} for AVR microcontrollers"; - homepage = http://gcc.gnu.org; - license = licenses.gpl3Plus; - platforms = with platforms; linux ++ darwin; - maintainers = with maintainers; [ mguentner ]; - }; -} diff --git a/pkgs/development/misc/avr/libc/default.nix b/pkgs/development/misc/avr/libc/default.nix index 039846d5fcfb826ddabf0dd57ee855edad9a227a..ab9a696afb007fba882e46ed3c914d5bd964f966 100644 --- a/pkgs/development/misc/avr/libc/default.nix +++ b/pkgs/development/misc/avr/libc/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchurl, avrgcc, avrbinutils, automake, autoconf }: +{ stdenv, fetchurl, automake, autoconf }: let version = "2.0.0"; @@ -11,28 +11,21 @@ stdenv.mkDerivation { sha256 = "15svr2fx8j6prql2il2fc0ppwlv50rpmyckaxx38d3gxxv97zpdj"; }; - buildInputs = [ avrgcc avrbinutils automake autoconf ]; - configurePhase = '' - unset LD - unset AS - unset AR - unset CC - unset CXX - unset RANLIB - unset STRIP - - ./configure --prefix=$out --build=$(./config.guess) --host=avr - ''; + nativeBuildInputs = [ automake autoconf ]; # Make sure we don't strip the libraries in lib/gcc/avr. - stripDebugList= "bin"; + stripDebugList = "bin"; dontPatchELF = true; + passthru = { + incdir = "/avr/include"; + }; + meta = with stdenv.lib; { description = "a C runtime library for AVR microcontrollers"; homepage = http://savannah.nongnu.org/projects/avr-libc/; license = licenses.bsd3; - platforms = platforms.unix; + platforms = [ "avr-none" ]; maintainers = with maintainers; [ mguentner ]; }; } diff --git a/pkgs/development/misc/newlib/default.nix b/pkgs/development/misc/newlib/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..693cfa093b08c33be2d062250f8d9c960b75a6f1 --- /dev/null +++ b/pkgs/development/misc/newlib/default.nix @@ -0,0 +1,35 @@ +{ stdenv, fetchurl, buildPackages }: + +let version = "3.0.0"; +in stdenv.mkDerivation { + name = "newlib-${version}"; + src = fetchurl { + url = "ftp://sourceware.org/pub/newlib/newlib-${version}.tar.gz"; + sha256 = "0chka3szh50krcz2dcxcsr1v1i000jylwnsrp2pgrrblxqsn6mn8"; + }; + + depsBuildBuild = [ buildPackages.stdenv.cc ]; + + # newlib expects CC to build for build platform, not host platform + preConfigure = '' + export CC=cc + ''; + + configurePlatforms = [ "build" "target" ]; + configureFlags = [ + "--host=${stdenv.buildPlatform.config}" + + "--disable-newlib-supplied-syscalls" + "--disable-nls" + "--enable-newlib-io-long-long" + "--enable-newlib-register-fini" + "--enable-newlib-retargetable-locking" + ]; + + dontDisableStatic = true; + + passthru = { + incdir = "/${stdenv.targetPlatform.config}/include"; + libdir = "/${stdenv.targetPlatform.config}/lib"; + }; +} diff --git a/pkgs/development/misc/qmk_firmware/default.nix b/pkgs/development/misc/qmk_firmware/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..0a7b4fd9d9a7ef39f01d5839491fbf287008aaf6 --- /dev/null +++ b/pkgs/development/misc/qmk_firmware/default.nix @@ -0,0 +1,27 @@ +{ stdenv, fetchFromGitHub +, avrgcc, avrbinutils +, gcc-arm-embedded, binutils-arm-embedded +, teensy-loader-cli, dfu-programmer, dfu-util }: + +let version = "0.6.144"; + +in stdenv.mkDerivation { + name = "qmk_firmware-${version}"; + src = fetchFromGitHub { + owner = "qmk"; + repo = "qmk_firmware"; + rev = version; + sha256 = "0m71f9w32ksqjkrwhqwhr74q5v3pr38bihjyb9ks0k5id0inhrjn"; + fetchSubmodules = true; + }; + buildFlags = "all:default"; + NIX_CFLAGS_COMPILE = "-Wno-error"; + nativeBuildInputs = [ + avrgcc + avrbinutils + gcc-arm-embedded + teensy-loader-cli + dfu-programmer + dfu-util + ]; +} diff --git a/pkgs/development/misc/stm32/betaflight/default.nix b/pkgs/development/misc/stm32/betaflight/default.nix index 0c601c7773cc5676956e8dfbbc71c1b80e470047..fbe48803f2dbcefbd580a3c40f3c3054b81d2fdd 100644 --- a/pkgs/development/misc/stm32/betaflight/default.nix +++ b/pkgs/development/misc/stm32/betaflight/default.nix @@ -1,5 +1,5 @@ { stdenv, fetchFromGitHub -, gcc-arm-embedded, python2 +, gcc-arm-embedded, binutils-arm-embedded, python2 , skipTargets ? [ # These targets do not build, for the reasons listed, along with the last version checked. # Probably all of the issues with these targets need to be addressed upstream. @@ -24,14 +24,17 @@ in stdenv.mkDerivation rec { sha256 = "1wyp23p876xbfi9z6gm4xn1nwss3myvrjjjq9pd3s0vf5gkclkg5"; }; - buildInputs = [ - gcc-arm-embedded + nativeBuildInputs = [ + gcc-arm-embedded binutils-arm-embedded python2 ]; postPatch = '' sed -ri "s/REVISION.*=.*git log.*/REVISION = ${builtins.substring 0 10 src.rev}/" Makefile # Simulate abbrev'd rev. sed -ri "s/binary hex/hex/" Makefile # No need for anything besides .hex + + substitutateInPlace Makefile \ + --replace "--specs=nano.specs" "" ''; enableParallelBuilding = true; @@ -58,7 +61,6 @@ in stdenv.mkDerivation rec { homepage = https://github.com/betaflight/betaflight; license = licenses.gpl3; maintainers = with maintainers; [ elitak ]; - platforms = [ "i686-linux" "x86_64-linux" ]; }; } diff --git a/pkgs/development/misc/stm32/inav/default.nix b/pkgs/development/misc/stm32/inav/default.nix index cb9cc80d32525db664ce72bf5d02b11b25e052b1..102b1eb8048d3990d8fff67c2f9b870d636ebd6b 100644 --- a/pkgs/development/misc/stm32/inav/default.nix +++ b/pkgs/development/misc/stm32/inav/default.nix @@ -1,5 +1,5 @@ { stdenv, fetchFromGitHub -, gcc-arm-embedded, ruby +, gcc-arm-embedded, binutils-arm-embedded, ruby }: let @@ -17,8 +17,8 @@ in stdenv.mkDerivation rec { sha256 = "15zai8qf43b06fmws1sbkmdgip51zp7gkfj7pp9b6gi8giarzq3y"; }; - buildInputs = [ - gcc-arm-embedded + nativeBuildInputs = [ + gcc-arm-embedded binutils-arm-embedded ruby ]; @@ -26,6 +26,9 @@ in stdenv.mkDerivation rec { sed -ri "s/REVISION.*=.*shell git.*/REVISION = ${builtins.substring 0 10 src.rev}/" Makefile # Simulate abbrev'd rev. sed -ri "s/-j *[0-9]+//" Makefile # Eliminate parallel build args in submakes sed -ri "s/binary hex/hex/" Makefile # No need for anything besides .hex + + substitutateInPlace Makefile \ + --replace "--specs=nano.specs" "" ''; enableParallelBuilding = true; @@ -50,7 +53,6 @@ in stdenv.mkDerivation rec { homepage = https://inavflight.github.io; license = licenses.gpl3; maintainers = with maintainers; [ elitak ]; - platforms = [ "i686-linux" "x86_64-linux" ]; }; } diff --git a/pkgs/development/mobile/androidenv/addon.xml b/pkgs/development/mobile/androidenv/addon.xml index 1bc1d110db164498467d1cf60a164958ed09a9dc..68792038d0002ea1cb5e994a192ade0ecb57a6dc 100644 --- a/pkgs/development/mobile/androidenv/addon.xml +++ b/pkgs/development/mobile/androidenv/addon.xml @@ -1,6 +1,6 @@ - + Terms and Conditions This is the Android Software Development Kit License Agreement @@ -35,7 +35,7 @@ This is the Android Software Development Kit License Agreement 3.3 You agree that Google or third parties own all legal right, title and interest in and to the SDK, including any Intellectual Property Rights that subsist in the SDK. "Intellectual Property Rights" means any and all rights under patent law, copyright law, trade secret law, trademark law, and any and all other proprietary rights. Google reserves all rights not expressly granted to you. -3.4 You may not use the SDK for any purpose not expressly permitted by the License Agreement. Except to the extent required by applicable third party licenses, you may not: (a) copy (except for backup purposes), modify, adapt, redistribute, decompile, reverse engineer, disassemble, or create derivative works of the SDK or any part of the SDK; or (b) load any part of the SDK onto a mobile handset or any other hardware device except a personal computer, combine any part of the SDK with other software, or distribute any software or device incorporating a part of the SDK. +3.4 You may not use the SDK for any purpose not expressly permitted by the License Agreement. Except to the extent required by applicable third party licenses, you may not copy (except for backup purposes), modify, adapt, redistribute, decompile, reverse engineer, disassemble, or create derivative works of the SDK or any part of the SDK. 3.5 Use, reproduction and distribution of components of the SDK licensed under an open source software license are governed solely by the terms of that open source software license and not the License Agreement. @@ -587,7 +587,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS& 3 - + 34908058 1f92abf3a76be66ae8032257fc7620acbd2b2e3a google_apis-3-r03.zip @@ -614,7 +614,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS& 2 - + 42435735 9b6e86d8568558de4d606a7debc4f6049608dbd0 google_apis-4_r02.zip @@ -641,7 +641,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS& 1 - + 49123776 46eaeb56b645ee7ffa24ede8fa17f3df70db0503 google_apis-5_r01.zip @@ -668,7 +668,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS& 1 - + 53382941 5ff545d96e031e09580a6cf55713015c7d4936b2 google_apis-6_r01.zip @@ -695,7 +695,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS& 1 - + 53691339 2e7f91e0fe34fef7f58aeced973c6ae52361b5ac google_apis-7_r01.zip @@ -722,7 +722,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS& 2 - + 59505020 3079958e7ec87222cac1e6b27bc471b27bf2c352 google_apis-8_r02.zip @@ -749,7 +749,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS& 2 - + 63401546 78664645a1e9accea4430814f8694291a7f1ea5d google_apis-9_r02.zip @@ -776,7 +776,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS& 2 - + 65781578 cc0711857c881fa7534f90cf8cc09b8fe985484d google_apis-10_r02.zip @@ -807,7 +807,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS& 1 - + 83477179 5eab5e81addee9f3576d456d205208314b5146a5 google_apis-11_r01.zip @@ -834,7 +834,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS& 1 - + 86099835 e9999f4fa978812174dfeceec0721c793a636e5d google_apis-12_r01.zip @@ -865,7 +865,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS& 1 - + 88615525 3b153edd211c27dc736c893c658418a4f9041417 google_apis-13_r01.zip @@ -896,7 +896,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS& 2 - + 106533714 f8eb4d96ad0492b4c0db2d7e4f1a1a3836664d39 google_apis-14_r02.zip @@ -925,7 +925,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS& 3 - + 106624396 d0d2bf26805eb271693570a1aaec33e7dc3f45e9 google_apis-15_r03.zip @@ -958,7 +958,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS& 4 - + 127341982 ee6acf1b01020bfa8a8e24725dbc4478bee5e792 google_apis-16_r04.zip @@ -991,7 +991,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS& 4 - + 137231243 a076be0677f38df8ca5536b44dfb411a0c808c4f google_apis-17_r04.zip @@ -1024,7 +1024,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS& 4 - + 143195183 6109603409debdd40854d4d4a92eaf8481462c8b google_apis-18_r04.zip @@ -1057,7 +1057,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS& 20 - + 147081 5b933abe830b2f25b4c0f171d45e9e0651e56311 google_apis-19_r20.zip @@ -1090,7 +1090,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS& 1 - + 154865 31361c2868f27343ee917fbd259c1463821b6145 google_apis-24_r1.zip @@ -1123,7 +1123,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS& 1 - + 154871 550e83eea9513ab11c44919ac6da54b36084a9f3 google_apis-25_r1.zip @@ -1156,7 +1156,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS& 1 - + 179499 66a754efb24e9bb07cc51648426443c7586c9d4a google_apis-21_r01.zip @@ -1189,7 +1189,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS& 1 - + 179259 5def0f42160cba8acff51b9c0c7e8be313de84f5 google_apis-22_r01.zip @@ -1222,7 +1222,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS& 1 - + 179900 04c5cc1a7c88967250ebba9561d81e24104167db google_apis-23_r01.zip @@ -1256,7 +1256,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS& 2 - + 78266751 92128a12e7e8b0fb5bac59153d7779b717e7b840 google_tv-12_r02.zip @@ -1278,7 +1278,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS& 1 - + 87721879 b73f7c66011ac8180b44aa4e83b8d78c66ea9a09 google_tv-13_r01.zip @@ -1303,7 +1303,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS& - + 355529608 a0d22beacc106a6977321f2b07d692ce4979e96a android_m2repository_r47.zip @@ -1323,7 +1323,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS& - + 215426029 05086add9e3a0eb1b67111108d7757a4337c3f10 google_m2repository_gms_v11_3_rc05_wear_2_0_5.zip @@ -1343,7 +1343,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS& - + 75109 355e8dc304a92a5616db235af8ee7bd554356254 market_licensing-r02.zip @@ -1364,7 +1364,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS& - + 110201 5305399dc1a56814e86b8459ce24871916f78b8c market_apk_expansion-r03.zip @@ -1386,7 +1386,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS& - + 5265389 92558dbc380bba3d55d0ec181167fb05ce7c79d9 google_play_services_3265130_r12.zip @@ -1401,16 +1401,16 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS& google_play_services_froyo - + - 44 + 49 - - 13796755 - d2bb583a3f62b068d448df10544c1852d910526f - google_play_services_v12_1_rc11.zip + + 15456884 + f95bf19634e2ab0430923247fe2c50246432d2e9 + google_play_services_v16_1_rc09.zip @@ -1428,7 +1428,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS& - + 8682859 dc8a2ed2fbd7246d4caf9ab10ffe7749dc35d1cc usb_driver_r11-windows.zip @@ -1443,28 +1443,6 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS& Google USB Driver usb_driver - - - - 5 - - - - - 436654 - bd2ac5ce7127070ac3229003eb69cfb806628ac9 - play_billing_r05.zip - - - - google - Google Inc. - Google Play Billing files and sample code - http://developer.android.com/google/play/billing/index.html - Google Play Billing Library - play_billing - market_billing - @@ -1473,7 +1451,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS& - + 704512 0102859d9575baa0bf4fd5eb422af2ad0fe6cb82 GoogleAdMobAdsSdkAndroid-6.4.1.zip @@ -1495,7 +1473,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS& - + 211432 dc14026bf0ce78315cb5dd00552607de0894de83 GoogleAnalyticsAndroid_2.0beta5.zip @@ -1516,7 +1494,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS& - + 4055193 13f3a3b2670a5fc04a7342861644be9a01b07e38 webdriver_r02.zip @@ -1538,7 +1516,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS& - + 5901400 ad066fd0dc7fc99d8aadac09c65a3c2519fbc7bf gcm_r03.zip @@ -1559,7 +1537,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS& - + 2167286 4fb5344e34e8faab4db18af07dace44c50db26a7 simulator_r01.zip @@ -1581,21 +1559,21 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS& - + 1346009 202a6e1b3009a0eb815f8c672d2d5b3717de6169 desktop-head-unit-linux_r01.1.zip linux - + 2375533 8179cbb3914493ebc5eb65b731cba061582f2e84 desktop-head-unit-macosx_r01.1.zip macosx - + 2691901 99c4a7172d73673552119347bc24c58b47da177b desktop-head-unit-windows_r01.1.zip @@ -1611,26 +1589,26 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS& auto - + 1 - 0 + 5 0 - - 450468876 - 50074a0f0312ee1d0d81d2cddc3d84a8a9e97a53 - aiasdk-1.0.0.zip + + 33351418 + 6c282b9c686e819fe7f5ac8f2249d2479acb63b4 + iasdk-1.5.0-1538000167.zip google Google Inc. - Android Instant Apps Development SDK - https://developer.android.com/topic/instant-apps/index.html - Instant Apps Development SDK + Google Play Instant Development SDK + https://developer.android.com/topic/google-play-instant/ + Google Play Instant Development SDK instantapps diff --git a/pkgs/development/mobile/androidenv/addons.nix b/pkgs/development/mobile/androidenv/addons.nix index ab5d570a3273356edf4ccc0d352db7d2fe7fc41a..1a8e2d32a4bba535c0b63201cd9d327b0e155020 100644 --- a/pkgs/development/mobile/androidenv/addons.nix +++ b/pkgs/development/mobile/androidenv/addons.nix @@ -296,8 +296,8 @@ in google_play_services = buildGoogleApis { name = "google_play_services"; src = fetchurl { - url = https://dl.google.com/android/repository/google_play_services_v12_1_rc11.zip; - sha1 = "d2bb583a3f62b068d448df10544c1852d910526f"; + url = https://dl.google.com/android/repository/google_play_services_v16_1_rc09.zip; + sha1 = "f95bf19634e2ab0430923247fe2c50246432d2e9"; }; meta = { description = "Google Play services client library and sample code"; @@ -308,8 +308,8 @@ in instant_apps = buildGoogleApis { name = "instant_apps_sdk"; src = fetchurl { - url = https://dl.google.com/android/repository/aiasdk-1.0.0.zip; - sha1 = "50074a0f0312ee1d0d81d2cddc3d84a8a9e97a53"; + url = https://dl.google.com/android/repository/iasdk-1.5.0-1538000167.zip; + sha1 = "6c282b9c686e819fe7f5ac8f2249d2479acb63b4"; }; meta = { description = "Android Instant Apps Development SDK"; @@ -317,4 +317,5 @@ in }; }; + } diff --git a/pkgs/development/mobile/androidenv/androidndk.nix b/pkgs/development/mobile/androidenv/androidndk.nix index 072a6dc3168eac9e0b406d9b0e5b21fe8988550e..23ae4378dc68410a67aa1f825643845839792f03 100644 --- a/pkgs/development/mobile/androidenv/androidndk.nix +++ b/pkgs/development/mobile/androidenv/androidndk.nix @@ -89,6 +89,16 @@ let do wrapProgram "$(pwd)/$i" --prefix PATH : "${runtime_paths}" done + + ${stdenv.lib.optionalString (stdenv.hostPlatform.system == "x86_64-linux") '' + for i in ${pkg_path}/prebuilt/linux-x86_64/bin/* + do + if ! isELF $i; then continue; fi + patchelf --set-interpreter ${stdenv.cc.libc.out}/lib/ld-linux-x86-64.so.2 $i + patchelf --set-rpath ${stdenv.cc.cc.lib}/lib64 $i + done + ''} + # make some executables available in PATH mkdir -pv ${bin_path} for i in \ diff --git a/pkgs/development/mobile/androidenv/androidsdk.nix b/pkgs/development/mobile/androidenv/androidsdk.nix index 5f61f25d54eeaf8f129bfa12275fadd22bf9c029..26750aed6cfc21435c27ca1ceab82595b3546d10 100644 --- a/pkgs/development/mobile/androidenv/androidsdk.nix +++ b/pkgs/development/mobile/androidenv/androidsdk.nix @@ -4,10 +4,18 @@ , freetype, fontconfig, glib, gtk2, atk, file, jdk, coreutils, libpulseaudio, dbus , zlib, glxinfo, xkeyboardconfig , includeSources +, licenseAccepted }: -{ platformVersions, abiVersions, useGoogleAPIs, useExtraSupportLibs ? false +{ platformVersions, abiVersions, useGoogleAPIs, buildToolsVersions ? [], useExtraSupportLibs ? false , useGooglePlayServices ? false, useInstantApps ? false }: +if !licenseAccepted then throw '' + You must accept the Android Software Development Kit License Agreement at + https://developer.android.com/studio/terms + by setting nixpkgs config option 'android_sdk.accept_license = true;' + '' +else assert licenseAccepted; + let inherit (stdenv.lib) makeLibraryPath; googleRepository = let version = "gms_v9_rc41_wear_2_0_rc6"; @@ -20,26 +28,32 @@ in stdenv.mkDerivation rec { name = "android-sdk-${version}"; - version = "25.2.5"; + version = "26.1.1"; src = if (stdenv.hostPlatform.system == "i686-linux" || stdenv.hostPlatform.system == "x86_64-linux") then fetchurl { - url = "https://dl.google.com/android/repository/tools_r${version}-linux.zip"; - sha256 = "0gnk49pkwy4m0nqwm1xnf3w4mfpi9w0kk7841xlawpwbkj0icxap"; + url = "https://dl.google.com/android/repository/sdk-tools-linux-4333796.zip"; + sha256 = "1yfy0qqxz1ixpsci1pizls1nrncmi8p16wcb9rimdn4q3mdfxzwj"; } else if stdenv.hostPlatform.system == "x86_64-darwin" then fetchurl { - url = "http://dl.google.com/android/repository/tools_r${version}-macosx.zip"; - sha256 = "0yg7wjmyw70xsh8k4hgbqb5rilam2a94yc8dwbh7fjwqcmpxgwqb"; + url = "https://dl.google.com/android/repository/sdk-tools-darwin-4333796.zip"; + sha256 = "0gl5c30m40kx0vvrpbaa8cw8wq2vb89r14hgzb1df4qgpic97cpc"; } else throw "platform not ${stdenv.hostPlatform.system} supported!"; + emulator = fetchurl { + url = "https://dl.google.com/android/repository/emulator-linux-4969155.zip"; + sha256 = "0iw0j6j3w9zpfalsa7xq2czz4vzgq96zk2zddjhanwwx4p8fhrfd"; + }; + buildCommand = '' mkdir -p $out/libexec cd $out/libexec unpackFile $src + unpackFile $emulator cd tools - for f in android traceview draw9patch hierarchyviewer monitor ddms screenshot2 uiautomatorviewer monkeyrunner jobb lint + for f in monitor bin/monkeyrunner bin/uiautomatorviewer do sed -i -e "s|/bin/ls|${coreutils}/bin/ls|" "$f" done @@ -54,24 +68,6 @@ stdenv.mkDerivation rec { patchelf --set-rpath ${stdenv_32bit.cc.cc.lib}/lib $i done - ${stdenv.lib.optionalString (stdenv.hostPlatform.system == "x86_64-linux") '' - for i in bin64/{mkfs.ext4,fsck.ext4,e2fsck,tune2fs,resize2fs} - do - patchelf --set-interpreter ${stdenv.cc.libc.out}/lib/ld-linux-x86-64.so.2 $i - patchelf --set-rpath ${stdenv.cc.cc.lib}/lib64 $i - done - ''} - - ${stdenv.lib.optionalString (stdenv.hostPlatform.system == "x86_64-linux") '' - # We must also patch the 64-bit emulator instances, if needed - - for i in emulator emulator64-arm emulator64-mips emulator64-x86 emulator64-crash-service emulator-check qemu/linux-x86_64/qemu-system-* - do - patchelf --set-interpreter ${stdenv.cc.libc.out}/lib/ld-linux-x86-64.so.2 $i - patchelf --set-rpath ${stdenv.cc.cc.lib}/lib64 $i - done - ''} - # The following scripts used SWT and wants to dynamically load some GTK+ stuff. # Creating these wrappers ensure that they can be found: @@ -79,24 +75,23 @@ stdenv.mkDerivation rec { --prefix PATH : ${jdk}/bin \ --prefix LD_LIBRARY_PATH : ${makeLibraryPath [ glib gtk2 libXtst ]} - wrapProgram `pwd`/uiautomatorviewer \ - --prefix PATH : ${jdk}/bin \ - --prefix LD_LIBRARY_PATH : ${stdenv.lib.makeLibraryPath [ glib gtk2 libXtst ]} - - wrapProgram `pwd`/hierarchyviewer \ + wrapProgram `pwd`/bin/uiautomatorviewer \ --prefix PATH : ${jdk}/bin \ --prefix LD_LIBRARY_PATH : ${stdenv.lib.makeLibraryPath [ glib gtk2 libXtst ]} # The emulators need additional libraries, which are dynamically loaded => let's wrap them ${stdenv.lib.optionalString (stdenv.hostPlatform.system == "x86_64-linux") '' - for i in emulator emulator64-arm emulator64-mips emulator64-x86 emulator64-crash-service + cd .. + for i in emulator/emulator* emulator/qemu/linux-x86_64/qemu-system-* do + patchelf --set-interpreter ${stdenv.cc.libc.out}/lib/ld-linux-x86-64.so.2 $i wrapProgram `pwd`/$i \ --prefix PATH : ${stdenv.lib.makeBinPath [ file glxinfo ]} \ - --suffix LD_LIBRARY_PATH : `pwd`/lib64:`pwd`/lib64/qt/lib:${makeLibraryPath [ stdenv.cc.cc libX11 libxcb libXau libXdmcp libXext libGLU_combined alsaLib zlib libpulseaudio dbus.lib ]} \ + --suffix LD_LIBRARY_PATH : `pwd`/lib:${makeLibraryPath [ stdenv.cc.cc libX11 libxcb libXau libXdmcp libXext libGLU_combined alsaLib zlib libpulseaudio dbus.lib ]} \ --suffix QT_XKB_CONFIG_ROOT : ${xkeyboardconfig}/share/X11/xkb done + cd tools ''} ''} @@ -107,7 +102,7 @@ stdenv.mkDerivation rec { # The monitor requires some more patching cd lib/monitor-x86 - patchelf --set-interpreter ${stdenv.cc.libc.out}/lib/ld-linux.so.2 monitor + patchelf --set-interpreter ${stdenv_32bit.cc.libc.out}/lib/ld-linux.so.2 monitor patchelf --set-rpath ${makeLibraryPath [ libX11 libXext libXrender freetype fontconfig ]} libcairo-swt.so wrapProgram `pwd`/monitor \ @@ -134,9 +129,17 @@ stdenv.mkDerivation rec { cd .. ln -s ${platformTools}/platform-tools - ln -s ${buildTools}/build-tools ln -s ${support}/support + mkdir -p build-tools + cd build-tools + + ${stdenv.lib.concatMapStrings + (v: "ln -s ${builtins.getAttr "v${builtins.replaceStrings ["."] ["_"] v}" buildTools}/build-tools/*") + (if (builtins.length buildToolsVersions) == 0 then platformVersions else buildToolsVersions)} + + cd .. + # Symlink required Google API add-ons mkdir -p add-ons @@ -245,6 +248,14 @@ stdenv.mkDerivation rec { fi done + for i in $out/libexec/tools/bin/* + do + if [ ! -d $i ] && [ -x $i ] + then + ln -sf $i $out/bin/$(basename $i) + fi + done + for i in $out/libexec/platform-tools/* do if [ ! -d $i ] && [ -x $i ] @@ -260,6 +271,19 @@ stdenv.mkDerivation rec { ln -sf $i $out/bin/$(basename $i) fi done + + for i in $out/libexec/emulator/* + do + if [ ! -d $i ] && [ -x $i ] + then + ln -sf $i $out/bin/$(basename $i) + fi + done + + wrapProgram $out/bin/sdkmanager \ + --set JAVA_HOME ${jdk} + + yes | ANDROID_SDK_HOME=$(mktemp -d) $out/bin/sdkmanager --licenses || true ''; buildInputs = [ unzip makeWrapper ]; diff --git a/pkgs/development/mobile/androidenv/build-tools-srcs-linux.nix b/pkgs/development/mobile/androidenv/build-tools-srcs-linux.nix new file mode 100644 index 0000000000000000000000000000000000000000..3c2960755e7bdb47a1033aed1226c4f7730f1514 --- /dev/null +++ b/pkgs/development/mobile/androidenv/build-tools-srcs-linux.nix @@ -0,0 +1,376 @@ + +# This file is generated from generate-tools.sh. DO NOT EDIT. +# Execute generate-tools.sh or fetch.sh to update the file. +{ fetchurl }: + +{ + + v17 = { + version = "17.0.0"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r17-linux.zip; + sha1 = "2c2872bc3806aabf16a12e3959c2183ddc866e6d"; + }; + }; + + v18_0_1 = { + version = "18.0.1"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r18.0.1-linux.zip; + sha1 = "f11618492b0d2270c332325d45d752d3656a9640"; + }; + }; + + v18_1_0 = { + version = "18.1.0"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r18.1-linux.zip; + sha1 = "f314a0599e51397f0886fe888b50dd98f2f050d8"; + }; + }; + + v18_1_1 = { + version = "18.1.1"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r18.1.1-linux.zip; + sha1 = "68c9acbfc0cec2d51b19efaed39831a17055d998"; + }; + }; + + v19 = { + version = "19.0.0"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r19-linux.zip; + sha1 = "55c1a6cf632e7d346f0002b275ec41fd3137fd83"; + }; + }; + + v19_0_1 = { + version = "19.0.1"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r19.0.1-linux.zip; + sha1 = "18d2312dc4368858914213087f4e61445aca4517"; + }; + }; + + v19_0_2 = { + version = "19.0.2"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r19.0.2-linux.zip; + sha1 = "a03a6bdea0091aea32e1b35b90a7294c9f04e3dd"; + }; + }; + + v19_0_3 = { + version = "19.0.3"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r19.0.3-linux.zip; + sha1 = "c2d6055478e9d2d4fba476ee85f99181ddd1160c"; + }; + }; + + v19_1_0 = { + version = "19.1.0"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r19.1-linux.zip; + sha1 = "1ff20ac15fa47a75d00346ec12f180d531b3ca89"; + }; + }; + + v20 = { + version = "20.0.0"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r20-linux.zip; + sha1 = "b688905526a5584d1327a662d871a635ff502758"; + }; + }; + + v21 = { + version = "21.0.0"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r21-linux.zip; + sha1 = "4933328fdeecbd554a29528f254f4993468e1cf4"; + }; + }; + + v21_0_1 = { + version = "21.0.1"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r21.0.1-linux.zip; + sha1 = "e573069eea3e5255e7a65bedeb767f4fd0a5f49a"; + }; + }; + + v21_0_2 = { + version = "21.0.2"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r21.0.2-linux.zip; + sha1 = "e1236ab8897b62b57414adcf04c132567b2612a5"; + }; + }; + + v21_1_0 = { + version = "21.1.0"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r21.1-linux.zip; + sha1 = "b7455e543784d52a8925f960bc880493ed1478cb"; + }; + }; + + v21_1_1 = { + version = "21.1.1"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r21.1.1-linux.zip; + sha1 = "1c712ee3a1ba5a8b0548f9c32f17d4a0ddfd727d"; + }; + }; + + v21_1_2 = { + version = "21.1.2"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r21.1.2-linux.zip; + sha1 = "5e35259843bf2926113a38368b08458735479658"; + }; + }; + + v22 = { + version = "22.0.0"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r22-linux.zip; + sha1 = "a8a1619dd090e44fac957bce6842e62abf87965b"; + }; + }; + + v22_0_1 = { + version = "22.0.1"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r22.0.1-linux.zip; + sha1 = "da8b9c5c3ede39298e6cf0283c000c2ee9029646"; + }; + }; + + v23 = { + version = "23.0.0"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r23-linux.zip; + sha1 = "c1d6209212b01469f80fa804e0c1d39a06bc9060"; + }; + }; + + v23_0_1 = { + version = "23.0.1"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r23.0.1-linux.zip; + sha1 = "b6ba7c399d5fa487d95289d8832e4ad943aed556"; + }; + }; + + v23_0_2 = { + version = "23.0.2"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r23.0.2-linux.zip; + sha1 = "8a9f2b37f6fcf7a9fa784dc21aeaeb41bbb9f2c3"; + }; + }; + + v23_0_3 = { + version = "23.0.3"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r23.0.3-linux.zip; + sha1 = "368f2600feac7e9b511b82f53d1f2240ae4a91a3"; + }; + }; + + v24 = { + version = "24.0.0"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r24-linux.zip; + sha1 = "c6271c4d78a5612ea6c7150688bcd5b7313de8d1"; + }; + }; + + v24_0_1 = { + version = "24.0.1"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r24.0.1-linux.zip; + sha1 = "84f18c392919a074fcbb9b1d967984e6b2fef8b4"; + }; + }; + + v24_0_2 = { + version = "24.0.2"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r24.0.2-linux.zip; + sha1 = "f199a7a788c3fefbed102eea34d6007737b803cf"; + }; + }; + + v24_0_3 = { + version = "24.0.3"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r24.0.3-linux.zip; + sha1 = "9e8cc49d66e03fa1a8ecc1ac3e58f1324f5da304"; + }; + }; + + v25 = { + version = "25.0.0"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r25-linux.zip; + sha1 = "f2bbda60403e75cabd0f238598c3b4dfca56ea44"; + }; + }; + + v25_0_1 = { + version = "25.0.1"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r25.0.1-linux.zip; + sha1 = "ff063d252ab750d339f5947d06ff782836f22bac"; + }; + }; + + v25_0_2 = { + version = "25.0.2"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r25.0.2-linux.zip; + sha1 = "ff953c0177e317618fda40516f3e9d95fd43c7ae"; + }; + }; + + v25_0_3 = { + version = "25.0.3"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r25.0.3-linux.zip; + sha1 = "db95f3a0ae376534d4d69f4cdb6fad20649f3509"; + }; + }; + + v26 = { + version = "26.0.0"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r26-linux.zip; + sha1 = "1cbe72929876f8a872ab1f1b1040a9f720261f59"; + }; + }; + + v26_rc1 = { + version = "26.0.0-rc1"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r26-rc1-linux.zip; + sha1 = "8cd6388dc96db2d7a49d06159cf990d3bbc78d04"; + }; + }; + + v26_rc2 = { + version = "26.0.0-rc2"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r26-rc2-linux.zip; + sha1 = "629bbd8d2e415bf64871fb0b4c0540fd6d0347a0"; + }; + }; + + v26_0_1 = { + version = "26.0.1"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r26.0.1-linux.zip; + sha1 = "5378c2c78091b414d0eac40a6bd37f2faa31a365"; + }; + }; + + v26_0_2 = { + version = "26.0.2"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r26.0.2-linux.zip; + sha1 = "5b2b7b66c7bf2151f2af183b5b50a17808850592"; + }; + }; + + v26_0_3 = { + version = "26.0.3"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r26.0.3-linux.zip; + sha1 = "8a2e6c1bcd845844523a68aa17e5442f0dce328c"; + }; + }; + + v27 = { + version = "27.0.0"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r27-linux.zip; + sha1 = "28542332ba97cf4a08c3eddfcf5edd70e3cf1260"; + }; + }; + + v27_0_1 = { + version = "27.0.1"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r27.0.1-linux.zip; + sha1 = "7f4eedb1077ef948b848040dcd15de9e8a759f4a"; + }; + }; + + v27_0_2 = { + version = "27.0.2"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r27.0.2-linux.zip; + sha1 = "b687ddf6be84f11607871138aad32cf857d0b837"; + }; + }; + + v27_0_3 = { + version = "27.0.3"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r27.0.3-linux.zip; + sha1 = "d85e7a6320eddffe7eeace3437605079dac938ca"; + }; + }; + + v28 = { + version = "28.0.0"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r28-linux.zip; + sha1 = "d9f8a754d833ccd334f56fcc6089c5925cd82abb"; + }; + }; + + v28_rc1 = { + version = "28.0.0-rc1"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r28-rc1-linux.zip; + sha1 = "1601977fae25fd478bcfaa0481ca5ea3c609d840"; + }; + }; + + v28_rc2 = { + version = "28.0.0-rc2"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r28-rc2-linux.zip; + sha1 = "efe9c0dde0646a07544c864276390ca6e96b24dc"; + }; + }; + + v28_0_1 = { + version = "28.0.1"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r28.0.1-linux.zip; + sha1 = "ee70dfa1fccb58b37cebc9544830511f36a137a0"; + }; + }; + + v28_0_2 = { + version = "28.0.2"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r28.0.2-linux.zip; + sha1 = "b4492209810a3fd48deaa982f9852fef12433d55"; + }; + }; + + v28_0_3 = { + version = "28.0.3"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r28.0.3-linux.zip; + sha1 = "ea6f2f7103cd9da9ff0bdf6e37fbbba548fa4165"; + }; + }; + +} diff --git a/pkgs/development/mobile/androidenv/build-tools-srcs-macosx.nix b/pkgs/development/mobile/androidenv/build-tools-srcs-macosx.nix new file mode 100644 index 0000000000000000000000000000000000000000..1e15aa7c873c85a28bfbe399d656d72d7cb515c3 --- /dev/null +++ b/pkgs/development/mobile/androidenv/build-tools-srcs-macosx.nix @@ -0,0 +1,376 @@ + +# This file is generated from generate-tools.sh. DO NOT EDIT. +# Execute generate-tools.sh or fetch.sh to update the file. +{ fetchurl }: + +{ + + v17 = { + version = "17.0.0"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r17-macosx.zip; + sha1 = "602ee709be9dbb8f179b1e4075148a57f9419930"; + }; + }; + + v18_0_1 = { + version = "18.0.1"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r18.0.1-macosx.zip; + sha1 = "d84f5692fb44d60fc53e5b2507cebf9f24626902"; + }; + }; + + v18_1_0 = { + version = "18.1.0"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r18.1-macosx.zip; + sha1 = "16ddb299b8b43063e5bb3387ec17147c5053dfd8"; + }; + }; + + v18_1_1 = { + version = "18.1.1"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r18.1.1-macosx.zip; + sha1 = "a9d9d37f6ddf859e57abc78802a77aaa166e48d4"; + }; + }; + + v19 = { + version = "19.0.0"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r19-macosx.zip; + sha1 = "86ec1c12db1bc446b7bcaefc5cc14eb361044e90"; + }; + }; + + v19_0_1 = { + version = "19.0.1"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r19.0.1-macosx.zip; + sha1 = "efaf50fb19a3edb8d03efbff76f89a249ad2920b"; + }; + }; + + v19_0_2 = { + version = "19.0.2"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r19.0.2-macosx.zip; + sha1 = "145bc43065d45f756d99d87329d899052b9a9288"; + }; + }; + + v19_0_3 = { + version = "19.0.3"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r19.0.3-macosx.zip; + sha1 = "651cf8754373b2d52e7f6aab2c52eabffe4e9ea4"; + }; + }; + + v19_1_0 = { + version = "19.1.0"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r19.1-macosx.zip; + sha1 = "0d11aae3417de1efb4b9a0e0a7855904a61bcec1"; + }; + }; + + v20 = { + version = "20.0.0"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r20-macosx.zip; + sha1 = "1240f629411c108a714c4ddd756937c7fab93f83"; + }; + }; + + v21 = { + version = "21.0.0"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r21-macosx.zip; + sha1 = "9bef7989b51436bd4e5114d8a0330359f077cbfa"; + }; + }; + + v21_0_1 = { + version = "21.0.1"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r21.0.1-macosx.zip; + sha1 = "b60c8f9b810c980abafa04896706f3911be1ade7"; + }; + }; + + v21_0_2 = { + version = "21.0.2"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r21.0.2-macosx.zip; + sha1 = "f17471c154058f3734729ef3cc363399b1cd3de1"; + }; + }; + + v21_1_0 = { + version = "21.1.0"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r21.1-macosx.zip; + sha1 = "df619356c2359aa5eacdd48699d15b335d9bd246"; + }; + }; + + v21_1_1 = { + version = "21.1.1"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r21.1.1-macosx.zip; + sha1 = "836a146eab0504aa9387a5132e986fe7c7381571"; + }; + }; + + v21_1_2 = { + version = "21.1.2"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r21.1.2-macosx.zip; + sha1 = "e7c906b4ba0eea93b32ba36c610dbd6b204bff48"; + }; + }; + + v22 = { + version = "22.0.0"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r22-macosx.zip; + sha1 = "af95429b24088d704bc5db9bd606e34ac1b82c0d"; + }; + }; + + v22_0_1 = { + version = "22.0.1"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r22.0.1-macosx.zip; + sha1 = "53dad7f608e01d53b17176ba11165acbfccc5bbf"; + }; + }; + + v23 = { + version = "23.0.0"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r23-macosx.zip; + sha1 = "90ba6e716f7703a236cd44b2e71c5ff430855a03"; + }; + }; + + v23_0_1 = { + version = "23.0.1"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r23.0.1-macosx.zip; + sha1 = "d96ec1522721e9a179ae2c591c99f75d31d39718"; + }; + }; + + v23_0_2 = { + version = "23.0.2"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r23.0.2-macosx.zip; + sha1 = "482c4cbceef8ff58aefd92d8155a38610158fdaf"; + }; + }; + + v23_0_3 = { + version = "23.0.3"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r23.0.3-macosx.zip; + sha1 = "fbc98cd303fd15a31d472de6c03bd707829f00b0"; + }; + }; + + v24 = { + version = "24.0.0"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r24-macosx.zip; + sha1 = "97fc4ed442f23989cc488d02c1d1de9bdde241de"; + }; + }; + + v24_0_1 = { + version = "24.0.1"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r24.0.1-macosx.zip; + sha1 = "5c6457fcdfa07724fb086d8ff4e8316fc0742848"; + }; + }; + + v24_0_2 = { + version = "24.0.2"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r24.0.2-macosx.zip; + sha1 = "8bb8fc575477491d5957de743089df412de55cda"; + }; + }; + + v24_0_3 = { + version = "24.0.3"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r24.0.3-macosx.zip; + sha1 = "a01c15f1b105c34595681075e1895d58b3fff48c"; + }; + }; + + v25 = { + version = "25.0.0"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r25-macosx.zip; + sha1 = "273c5c29a65cbed00e44f3aa470bbd7dce556606"; + }; + }; + + v25_0_1 = { + version = "25.0.1"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r25.0.1-macosx.zip; + sha1 = "7bf7f22d7d48ef20b6ab0e3d7a2912e5c088340f"; + }; + }; + + v25_0_2 = { + version = "25.0.2"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r25.0.2-macosx.zip; + sha1 = "12a5204bb3b6e39437535469fde7ddf42da46b16"; + }; + }; + + v25_0_3 = { + version = "25.0.3"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r25.0.3-macosx.zip; + sha1 = "160d2fefb5ce68e443427fc30a793a703b63e26e"; + }; + }; + + v26 = { + version = "26.0.0"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r26-macosx.zip; + sha1 = "d01a1aeca03747245f1f5936b3cb01759c66d086"; + }; + }; + + v26_rc1 = { + version = "26.0.0-rc1"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r26-rc1-macosx.zip; + sha1 = "5c5a1de7d5f4f000d36ae349229fe0be846d6137"; + }; + }; + + v26_rc2 = { + version = "26.0.0-rc2"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r26-rc2-macosx.zip; + sha1 = "cb1eb738a1f7003025af267a9b8cc2d259533c70"; + }; + }; + + v26_0_1 = { + version = "26.0.1"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r26.0.1-macosx.zip; + sha1 = "cbde59de198916b390777dd0227921bfa2120832"; + }; + }; + + v26_0_2 = { + version = "26.0.2"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r26.0.2-macosx.zip; + sha1 = "d9ed7c7f149ce38be5dc08979aea8acec1459ca0"; + }; + }; + + v26_0_3 = { + version = "26.0.3"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r26.0.3-macosx.zip; + sha1 = "5bb90ed935d99e5bc90686f43b852e68c5ad40df"; + }; + }; + + v27 = { + version = "27.0.0"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r27-macosx.zip; + sha1 = "fb4e8d7e6b8d29a77090e34024077a80458d5ae1"; + }; + }; + + v27_0_1 = { + version = "27.0.1"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r27.0.1-macosx.zip; + sha1 = "1edd07bfdbadd95652d093040e16d858f7489594"; + }; + }; + + v27_0_2 = { + version = "27.0.2"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r27.0.2-macosx.zip; + sha1 = "6d5d9cf2a47877f273f4b742b19e712a051a31be"; + }; + }; + + v27_0_3 = { + version = "27.0.3"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r27.0.3-macosx.zip; + sha1 = "61d9fb18790c68d66ff73bf1e7ad56bc1f1eef2d"; + }; + }; + + v28 = { + version = "28.0.0"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r28-macosx.zip; + sha1 = "72088d32d1d82cc3c2cf7cf6618b6130c0c84ade"; + }; + }; + + v28_rc1 = { + version = "28.0.0-rc1"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r28-rc1-macosx.zip; + sha1 = "2c77821967a2330b7b227072d0b1c02ef19fe2fc"; + }; + }; + + v28_rc2 = { + version = "28.0.0-rc2"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r28-rc2-macosx.zip; + sha1 = "0d0314b353589feb10e528b44c5a685b6658d797"; + }; + }; + + v28_0_1 = { + version = "28.0.1"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r28.0.1-macosx.zip; + sha1 = "aeef42ad953f1630dd6f5d71eefdc0b825211462"; + }; + }; + + v28_0_2 = { + version = "28.0.2"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r28.0.2-macosx.zip; + sha1 = "c10dd5a7825578622fb362a8a34f76eb3ba0c0a9"; + }; + }; + + v28_0_3 = { + version = "28.0.3"; + src = fetchurl { + url = https://dl.google.com/android/repository/build-tools_r28.0.3-macosx.zip; + sha1 = "f8c333a2991b1ab05a671bc6248b78e00edcd83a"; + }; + }; + +} diff --git a/pkgs/development/mobile/androidenv/build-tools.nix b/pkgs/development/mobile/androidenv/build-tools.nix index 85e604bd3f4405871513c30494cb315da46d6167..b362dc2dca5c6421d4698ff9b3cf5113e76a97d9 100644 --- a/pkgs/development/mobile/androidenv/build-tools.nix +++ b/pkgs/development/mobile/androidenv/build-tools.nix @@ -1,56 +1,53 @@ -{stdenv, stdenv_32bit, fetchurl, unzip, zlib_32bit, ncurses_32bit, file, zlib, ncurses}: - -stdenv.mkDerivation rec { - version = "26.0.2"; - name = "android-build-tools-r${version}"; - src = if (stdenv.hostPlatform.system == "i686-linux" || stdenv.hostPlatform.system == "x86_64-linux") - then fetchurl { - url = "https://dl.google.com/android/repository/build-tools_r${version}-linux.zip"; - sha256 = "1kii880bwhjkc343zwx1ysxyisxhczrwhphnxbwsgi45mjgq8lm7"; - } - else if stdenv.hostPlatform.system == "x86_64-darwin" then fetchurl { - url = "https://dl.google.com/android/repository/build-tools_r${version}-macosx.zip"; - sha256 = "1x0ycprl6hgsm23kck5ind7x00hzydc5k3h3ch4a13407xbpvzvx"; - } - else throw "System ${stdenv.hostPlatform.system} not supported!"; - - buildCommand = '' - mkdir -p $out/build-tools - cd $out/build-tools - unzip $src - mv android-* ${version} - - ${stdenv.lib.optionalString (stdenv.hostPlatform.system == "i686-linux" || stdenv.hostPlatform.system == "x86_64-linux") - '' - cd ${version} - - ln -s ${ncurses.out}/lib/libncurses.so.5 `pwd`/lib64/libtinfo.so.5 - - find . -type f -print0 | while IFS= read -r -d "" file - do - type=$(file "$file") - ## Patch 64-bit binaries - if grep -q "ELF 64-bit" <<< "$type" - then - if grep -q "interpreter" <<< "$type" +{stdenv, lib, stdenv_32bit, fetchurl, unzip, zlib_32bit, ncurses_32bit, file, zlib, ncurses, coreutils, buildToolsSources}: + +let buildBuildTools = name: { version, src }: + stdenv.mkDerivation rec { + inherit version src; + name = "android-build-tools-r${version}"; + buildCommand = '' + mkdir -p $out/build-tools + cd $out/build-tools + unzip $src + mv android-* ${version} + + cd ${version} + + for f in $(grep -Rl /bin/ls .); do + sed -i -e "s|/bin/ls|${coreutils}/bin/ls|" "$f" + done + + ${stdenv.lib.optionalString (stdenv.hostPlatform.system == "i686-linux" || stdenv.hostPlatform.system == "x86_64-linux") + '' + + ln -s ${ncurses.out}/lib/libncurses.so.5 `pwd`/lib64/libtinfo.so.5 + + find . -type f -print0 | while IFS= read -r -d "" file + do + type=$(file "$file") + ## Patch 64-bit binaries + if grep -q "ELF 64-bit" <<< "$type" then - patchelf --set-interpreter ${stdenv.cc.libc.out}/lib/ld-linux-x86-64.so.2 "$file" - fi - patchelf --set-rpath `pwd`/lib64:${stdenv.cc.cc.lib.out}/lib:${zlib.out}/lib:${ncurses.out}/lib "$file" - ## Patch 32-bit binaries - elif grep -q "ELF 32-bit" <<< "$type" - then - if grep -q "interpreter" <<< "$type" + if grep -q "interpreter" <<< "$type" + then + patchelf --set-interpreter ${stdenv.cc.libc.out}/lib/ld-linux-x86-64.so.2 "$file" + fi + patchelf --set-rpath `pwd`/lib64:${stdenv.cc.cc.lib.out}/lib:${zlib.out}/lib:${ncurses.out}/lib "$file" + ## Patch 32-bit binaries + elif grep -q "ELF 32-bit" <<< "$type" then - patchelf --set-interpreter ${stdenv_32bit.cc.libc.out}/lib/ld-linux.so.2 "$file" + if grep -q "interpreter" <<< "$type" + then + patchelf --set-interpreter ${stdenv_32bit.cc.libc.out}/lib/ld-linux.so.2 "$file" + fi + patchelf --set-rpath ${stdenv_32bit.cc.cc.lib.out}/lib:${zlib_32bit.out}/lib:${ncurses_32bit.out}/lib "$file" fi - patchelf --set-rpath ${stdenv_32bit.cc.cc.lib.out}/lib:${zlib_32bit.out}/lib:${ncurses_32bit.out}/lib "$file" - fi - done - ''} + done + ''} - patchShebangs . - ''; + patchShebangs . + ''; - buildInputs = [ unzip file ]; -} + buildInputs = [ unzip file ]; + }; +in + lib.mapAttrs buildBuildTools buildToolsSources diff --git a/pkgs/development/mobile/androidenv/default.nix b/pkgs/development/mobile/androidenv/default.nix index 1f61be9440b0ca0a58909920f4385a037ae3edae..9058da1c50a0c39fa3d31c5e3faf18c382bfcbab 100644 --- a/pkgs/development/mobile/androidenv/default.nix +++ b/pkgs/development/mobile/androidenv/default.nix @@ -1,5 +1,5 @@ { buildPackages, pkgs, pkgs_i686, targetPackages -, includeSources ? true +, includeSources ? true, licenseAccepted ? false }: # TODO: use callPackage instead of import to avoid so many inherits @@ -9,8 +9,19 @@ rec { inherit buildPackages pkgs; }; + buildToolsSources = let + system = pkgs.stdenv.hostPlatform.system; + path = if (system == "i686-linux" || system == "x86_64-linux") + then ./build-tools-srcs-linux.nix + else if system == "x86_64-darwin" + then ./build-tools-srcs-macosx.nix + else throw "System: ${system} not supported!"; + in + import path { inherit (pkgs) fetchurl; }; + buildTools = import ./build-tools.nix { - inherit (pkgs) stdenv fetchurl unzip zlib file; + inherit (pkgs) stdenv lib fetchurl unzip zlib file coreutils; + inherit buildToolsSources; stdenv_32bit = pkgs_i686.stdenv; zlib_32bit = pkgs_i686.zlib; ncurses_32bit = pkgs_i686.ncurses5; @@ -57,7 +68,7 @@ rec { inherit platformTools buildTools support supportRepository platforms sysimages - addons sources includeSources; + addons sources includeSources licenseAccepted; stdenv_32bit = pkgs_i686.stdenv; }; @@ -222,7 +233,37 @@ rec { useInstantApps = true; }; - androidsdk_latest = androidsdk_8_0; + androidsdk_8_1 = androidsdk { + platformVersions = [ "27" ]; + abiVersions = [ "x86" "x86_64"]; + useGoogleAPIs = true; + }; + + androidsdk_8_1_extras = androidsdk { + platformVersions = [ "27" ]; + abiVersions = [ "x86" "x86_64"]; + useGoogleAPIs = true; + useExtraSupportLibs = true; + useGooglePlayServices = true; + useInstantApps = true; + }; + + androidsdk_9_0 = androidsdk { + platformVersions = [ "28" ]; + abiVersions = [ "x86" "x86_64"]; + useGoogleAPIs = true; + }; + + androidsdk_9_0_extras = androidsdk { + platformVersions = [ "28" ]; + abiVersions = [ "x86" "x86_64"]; + useGoogleAPIs = true; + useExtraSupportLibs = true; + useGooglePlayServices = true; + useInstantApps = true; + }; + + androidsdk_latest = androidsdk_9_0; androidndk_10e = pkgs.callPackage ./androidndk.nix { inherit (buildPackages) diff --git a/pkgs/development/mobile/androidenv/fetch.sh b/pkgs/development/mobile/androidenv/fetch.sh index 2edbe6bf489889ba7d2b963d9a976d42217d66d4..ef15e8eaeda7a6f3d85cfead35e0ab7915d348d3 100755 --- a/pkgs/development/mobile/androidenv/fetch.sh +++ b/pkgs/development/mobile/androidenv/fetch.sh @@ -1,8 +1,5 @@ #! /usr/bin/env nix-shell -#! nix-shell -i bash --pure -p androidsdk curl libxslt - -# this shows a list of available xmls -android list sdk | grep 'Parse XML:' | cut -f8- -d\ # | xargs -n 1 curl -O +#! nix-shell -i bash --pure -p curl libxslt # we skip the intel addons, as they are Windows+osX only # we skip the default sys-img (arm?) because it is empty @@ -14,3 +11,4 @@ curl -o sys-img.xml https://dl.google.com/android/repository/sys-img/andro ./generate-platforms.sh ./generate-sysimages.sh ./generate-sources.sh +./generate-tools.sh diff --git a/pkgs/development/mobile/androidenv/generate-tools.sh b/pkgs/development/mobile/androidenv/generate-tools.sh new file mode 100755 index 0000000000000000000000000000000000000000..5799894fd4574b8c5559961c341d9031b59f551d --- /dev/null +++ b/pkgs/development/mobile/androidenv/generate-tools.sh @@ -0,0 +1,4 @@ +#!/bin/sh -e + +xsltproc --stringparam os linux generate-tools.xsl repository-11.xml > build-tools-srcs-linux.nix +xsltproc --stringparam os macosx generate-tools.xsl repository-11.xml > build-tools-srcs-macosx.nix diff --git a/pkgs/development/mobile/androidenv/generate-tools.xsl b/pkgs/development/mobile/androidenv/generate-tools.xsl new file mode 100644 index 0000000000000000000000000000000000000000..814bad12988956428ae52ad02942f013327d20b6 --- /dev/null +++ b/pkgs/development/mobile/androidenv/generate-tools.xsl @@ -0,0 +1,43 @@ + + + + + + + + + + + + + + + https://dl.google.com/android/repository/ + + + + + + +# This file is generated from generate-tools.sh. DO NOT EDIT. +# Execute generate-tools.sh or fetch.sh to update the file. +{ fetchurl }: + +{ + + + + + + v___rc = { + version = "..-rc"; + src = fetchurl { + url = ; + sha1 = ""; + }; + }; + +} + + diff --git a/pkgs/development/mobile/androidenv/platforms-linux.nix b/pkgs/development/mobile/androidenv/platforms-linux.nix index e24a9c4316024600a36ca2bd24878aaf2348e1db..dbb295f8cf557a93b9b4463eec2ef31df007163e 100644 --- a/pkgs/development/mobile/androidenv/platforms-linux.nix +++ b/pkgs/development/mobile/androidenv/platforms-linux.nix @@ -316,4 +316,28 @@ in }; }; + platform_27 = buildPlatform { + name = "android-platform-8.1.0"; + src = fetchurl { + url = https://dl.google.com/android/repository/platform-27_r03.zip; + sha1 = "35f747e7e70b2d16e0e4246876be28d15ea1c353"; + }; + meta = { + description = "Android SDK Platform 27"; + homepage = http://developer.android.com/sdk/; + }; + }; + + platform_28 = buildPlatform { + name = "android-platform-9"; + src = fetchurl { + url = https://dl.google.com/android/repository/platform-28_r06.zip; + sha1 = "9a4e52b1d55bd2e24216b150aafae2503d3efba6"; + }; + meta = { + description = "Android SDK Platform 28"; + homepage = http://developer.android.com/sdk/; + }; + }; + } diff --git a/pkgs/development/mobile/androidenv/platforms-macosx.nix b/pkgs/development/mobile/androidenv/platforms-macosx.nix index 3775872514ca3e8d05b0f6d8b211639dcd9d3ed8..30ed94e516a27f3075f01f9573a57f4583ef5b85 100644 --- a/pkgs/development/mobile/androidenv/platforms-macosx.nix +++ b/pkgs/development/mobile/androidenv/platforms-macosx.nix @@ -316,4 +316,28 @@ in }; }; + platform_27 = buildPlatform { + name = "android-platform-8.1.0"; + src = fetchurl { + url = https://dl.google.com/android/repository/platform-27_r03.zip; + sha1 = "35f747e7e70b2d16e0e4246876be28d15ea1c353"; + }; + meta = { + description = "Android SDK Platform 27"; + homepage = http://developer.android.com/sdk/; + }; + }; + + platform_28 = buildPlatform { + name = "android-platform-9"; + src = fetchurl { + url = https://dl.google.com/android/repository/platform-28_r06.zip; + sha1 = "9a4e52b1d55bd2e24216b150aafae2503d3efba6"; + }; + meta = { + description = "Android SDK Platform 28"; + homepage = http://developer.android.com/sdk/; + }; + }; + } diff --git a/pkgs/development/mobile/androidenv/repository-11.xml b/pkgs/development/mobile/androidenv/repository-11.xml index 3924d6ddd3b6d7bd39eee14a8520c0119fa19ff7..45ad16be57b0405ad6dd4fac5def296e5d8ab476 100644 --- a/pkgs/development/mobile/androidenv/repository-11.xml +++ b/pkgs/development/mobile/androidenv/repository-11.xml @@ -15,7 +15,7 @@ * limitations under the License. --> - + Terms and Conditions This is the Android Software Development Kit License Agreement @@ -50,7 +50,7 @@ This is the Android Software Development Kit License Agreement 3.3 You agree that Google or third parties own all legal right, title and interest in and to the SDK, including any Intellectual Property Rights that subsist in the SDK. "Intellectual Property Rights" means any and all rights under patent law, copyright law, trade secret law, trademark law, and any and all other proprietary rights. Google reserves all rights not expressly granted to you. -3.4 You may not use the SDK for any purpose not expressly permitted by the License Agreement. Except to the extent required by applicable third party licenses, you may not: (a) copy (except for backup purposes), modify, adapt, redistribute, decompile, reverse engineer, disassemble, or create derivative works of the SDK or any part of the SDK; or (b) load any part of the SDK onto a mobile handset or any other hardware device except a personal computer, combine any part of the SDK with other software, or distribute any software or device incorporating a part of the SDK. +3.4 You may not use the SDK for any purpose not expressly permitted by the License Agreement. Except to the extent required by applicable third party licenses, you may not copy (except for backup purposes), modify, adapt, redistribute, decompile, reverse engineer, disassemble, or create derivative works of the SDK or any part of the SDK. 3.5 Use, reproduction and distribution of components of the SDK licensed under an open source software license are governed solely by the terms of that open source software license and not the License Agreement. @@ -296,45 +296,93 @@ This is the Android SDK Preview License Agreement (the "License Agreement&q June 2014. - + NDK - 15 + 18 - - 960251267 - ea4b5d76475db84745aa8828000d009625fc1f98 - android-ndk-r15c-darwin-x86_64.zip + + 542911996 + 98cb9909aa8c2dab32db188bbdc3ac6207e09440 + android-ndk-r18b-darwin-x86_64.zip macosx 64 - - 974976754 - 0bf02d4e8b85fd770fd7b9b2cdec57f9441f27a2 - android-ndk-r15c-linux-x86_64.zip + + 557038702 + 500679655da3a86aecf67007e8ab230ea9b4dd7b + android-ndk-r18b-linux-x86_64.zip linux 64 - - 784778144 - f2e47121feb73ec34ced5e947cbf1adc6b56246e - android-ndk-r15c-windows-x86.zip + + 504605336 + 4b8b6a4edc0fa967b429c1d6d25adf69acc28803 + android-ndk-r18b-windows-x86.zip windows 32 - - 849733996 - 970bb2496de0eada74674bb1b06d79165f725696 - android-ndk-r15c-windows-x86_64.zip + + 522489470 + 6b6d4138aaaad7166679fdfa4780e177f95cee6f + android-ndk-r18b-windows-x86_64.zip windows 64 + + + 9 + 28 + Android SDK Platform 28 + 6 + + + + 75565084 + 9a4e52b1d55bd2e24216b150aafae2503d3efba6 + platform-28_r06.zip + + + + + 22 + + http://developer.android.com/sdk/ + + 15 + 1 + + + + + 8.1.0 + 27 + Android SDK Platform 27 + 3 + + + + 65635348 + 35f747e7e70b2d16e0e4246876be28d15ea1c353 + platform-27_r03.zip + + + + + 22 + + http://developer.android.com/sdk/ + + 15 + 1 + + 8.0.0 @@ -343,7 +391,7 @@ June 2014. 2 - + 63623734 e4ae5d7aa557a3c827135838ee400da8443ac4ef platform-26_r02.zip @@ -367,7 +415,7 @@ June 2014. 3 - + 85424763 00c2c5765e8988504be10a1eb66ed71fcdbd7fe8 platform-25_r03.zip @@ -391,7 +439,7 @@ June 2014. 2 - + 82648154 8912da3d4bfe7a9f28f0e5ce92d3a8dc96342aee platform-24_r02.zip @@ -415,7 +463,7 @@ June 2014. 3 - + 70433421 027fede3de6aa1649115bbd0bffff30ccd51c9a0 platform-23_r03.zip @@ -439,7 +487,7 @@ June 2014. 2 - + 66852371 5d1bd10fea962b216a0dece1247070164760a9fc android-22_r02.zip @@ -463,7 +511,7 @@ June 2014. 2 - + 65897960 53536556059bb29ae82f414fd2e14bc335a4eb4c android-21_r02.zip @@ -487,7 +535,7 @@ June 2014. 2 - + 63567784 a9251f8a3f313ab05834a07a963000927637e01d android-20_r02.zip @@ -511,7 +559,7 @@ June 2014. 4 - + 63871092 2ff20d89e68f2f5390981342e009db5a2d456aaa android-19_r04.zip @@ -535,7 +583,7 @@ June 2014. 3 - + 57771739 e6b09b3505754cbbeb4a5622008b907262ee91cb android-18_r03.zip @@ -559,7 +607,7 @@ June 2014. 3 - + 57030216 dbe14101c06e6cdb34e300393e64e64f8c92168a android-17_r03.zip @@ -583,7 +631,7 @@ June 2014. 5 - + 48128695 12a5ce6235a76bc30f62c26bda1b680e336abd07 android-16_r05.zip @@ -607,7 +655,7 @@ June 2014. 5 - + 44533475 69ab4c443b37184b2883af1fd38cc20cbeffd0f3 android-15_r05.zip @@ -631,7 +679,7 @@ June 2014. 4 - + 46038082 d4f1d8fbca25225b5f0e7a0adf0d39c3d6e60b3c android-14_r04.zip @@ -652,7 +700,7 @@ June 2014. 1 - + 108426536 6189a500a8c44ae73a439604363de93591163cd9 android-3.2_r01.zip @@ -675,7 +723,7 @@ June 2014. 3 - + 106472351 4a50a6679cd95bb68bb5fc032e754cd7c5e2b1bf android-3.1_r03.zip @@ -698,7 +746,7 @@ June 2014. 2 - + 104513908 2c7d4bd13f276e76f6bbd87315fe27aba351dd37 android-3.0_r02.zip @@ -721,7 +769,7 @@ June 2014. 2 - + 85470907 887e37783ec32f541ea33c2c649dda648e8e6fb3 android-2.3.3_r02.zip @@ -744,7 +792,7 @@ June 2014. 2 - + 78732563 209f8a7a8b2cb093fce858b8b55fed3ba5206773 android-2.3.1_r02.zip @@ -767,7 +815,7 @@ June 2014. 3 - + 74652366 231262c63eefdff8fd0386e9ccfefeb27a8f9202 android-2.2_r03.zip @@ -790,7 +838,7 @@ June 2014. 3 - + 70142829 5ce51b023ac19f8738500b1007a1da5de2349a1e android-2.1_r03.zip @@ -814,21 +862,21 @@ June 2014. 1 - + 79192618 ce2c971dce352aa28af06bda92a070116aa5ae1a android-2.0.1_r01-linux.zip linux - + 79035527 c3096f80d75a6fc8cb38ef8a18aec920e53d42c0 android-2.0.1_r01-macosx.zip macosx - + 80385601 255781ebe4509d9707d0e77edda2815e2bc216e6 android-2.0.1_r01-windows.zip @@ -853,21 +901,21 @@ June 2014. 1 - + 75095268 be9be6a99ca32875c96ec7f91160ca9fce7e3c7d android-2.0_r01-linux.zip linux - + 74956356 2a866d0870dbba18e0503cd41e5fae988a21b314 android-2.0_r01-macosx.zip macosx - + 76288040 aeb623217ff88b87216d6eb7dbc846ed53f68f57 android-2.0_r01-windows.zip @@ -892,21 +940,21 @@ June 2014. 3 - + 63454485 483ed088e45bbdf3444baaf9250c8b02e5383cb0 android-1.6_r03-linux.zip linux - + 62418496 bdafad44f5df9f127979bdb21a1fdd87ee3cd625 android-1.6_r03-macosx.zip macosx - + 64654625 ce0b5e4ffaf12ca4fd07c2da71a8a1ab4a03dc22 android-1.6_r03-windows.zip @@ -931,21 +979,21 @@ June 2014. 4 - + 53348669 5c134b7df5f4b8bd5b61ba93bdaebada8fa3468c android-1.5_r04-linux.zip linux - + 52440607 d3a67c2369afa48b6c3c7624de5031c262018d1e android-1.5_r04-macosx.zip macosx - + 54624370 5bb106d2e40d481edd337b0833093843e15fe49a android-1.5_r04-windows.zip @@ -970,21 +1018,21 @@ June 2014. 1 - + 45476658 c054d25c9b4c6251fa49c2f9c54336998679d3fe android-1.1_r1-linux.zip linux - + 45584305 e21dbcff45b7356657449ebb3c7e941be2bb5ebe android-1.1_r1-macosx.zip macosx - 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+ 21229048 18d2312dc4368858914213087f4e61445aca4517 build-tools_r19.0.1-linux.zip linux - + 21450597 efaf50fb19a3edb8d03efbff76f89a249ad2920b build-tools_r19.0.1-macosx.zip macosx - + 20500648 5ef422bac5b28f4ced108319ed4a6bc7050a6234 build-tools_r19.0.1-windows.zip @@ -2119,21 +2595,21 @@ June 2014. - + 21339943 55c1a6cf632e7d346f0002b275ec41fd3137fd83 build-tools_r19-linux.zip linux - + 21441270 86ec1c12db1bc446b7bcaefc5cc14eb361044e90 build-tools_r19-macosx.zip macosx - + 20611447 6edf505c20f5ece9c48fa0aff9a90488f9654d52 build-tools_r19-windows.zip @@ -2152,21 +2628,21 @@ June 2014. - + 20229760 68c9acbfc0cec2d51b19efaed39831a17055d998 build-tools_r18.1.1-linux.zip linux - + 20452157 a9d9d37f6ddf859e57abc78802a77aaa166e48d4 build-tools_r18.1.1-macosx.zip macosx - + 19660000 c4605066e2f851387ea70bc1442b1968bd7b4a15 build-tools_r18.1.1-windows.zip @@ -2185,21 +2661,21 @@ June 2014. - + 20229298 f314a0599e51397f0886fe888b50dd98f2f050d8 build-tools_r18.1-linux.zip linux - + 20451524 16ddb299b8b43063e5bb3387ec17147c5053dfd8 build-tools_r18.1-macosx.zip macosx - + 19659547 3a9810fc8559ab03c09378f07531e8cae2f1db30 build-tools_r18.1-windows.zip @@ -2218,21 +2694,21 @@ June 2014. - + 16627330 f11618492b0d2270c332325d45d752d3656a9640 build-tools_r18.0.1-linux.zip linux - + 16633121 d84f5692fb44d60fc53e5b2507cebf9f24626902 build-tools_r18.0.1-macosx.zip macosx - + 15413527 a6c2afd0b6289d589351956d2f5212b37014ca7d build-tools_r18.0.1-windows.zip @@ -2251,21 +2727,21 @@ June 2014. - + 11696007 2c2872bc3806aabf16a12e3959c2183ddc866e6d build-tools_r17-linux.zip linux - + 12208114 602ee709be9dbb8f179b1e4075148a57f9419930 build-tools_r17-macosx.zip macosx - + 11004914 899897d327b0bad492d3a40d3db4d96119c15bc0 build-tools_r17-windows.zip @@ -2275,32 +2751,32 @@ June 2014. - + - 26 + 28 0 - 0 + 1 - - 7771750 - e75b6137dc444f777eb02f44a6d9819b3aabff82 - platform-tools_r26.0.0-darwin.zip + + 6848749 + ed1edad4a48c27655ce98d0a5821e7296e9de145 + platform-tools_r28.0.1-darwin.zip macosx - - 7859155 - 00de8a6631405b617c10f68cd11ff2e1cd528e23 - platform-tools_r26.0.0-linux.zip + + 6843966 + 74ff83bc203f01c4f04bd9316ab5a2573f023fd1 + platform-tools_r28.0.1-linux.zip linux - - 7511554 - a4128ebc3d1b6372d981810920e3fa01637f891a - platform-tools_r26.0.0-windows.zip + + 6183783 + 5a44d10d41725aa718c71b6e44bc2dea6f1a7f49 + platform-tools_r28.0.1-windows.zip windows @@ -2315,21 +2791,21 @@ June 2014. - + 277894900 72df3aa1988c0a9003ccdfd7a13a7b8bd0f47fc1 tools_r25.2.5-linux.zip linux - + 200529982 d2168d963ac5b616e3d3ddaf21511d084baf3659 tools_r25.2.5-macosx.zip macosx - + 306785944 a7f7ebeae1c8d8f62d3a8466e9c81baee7cc31ca tools_r25.2.5-windows.zip @@ -2347,7 +2823,7 @@ June 2014. 1 - + 419477967 eef58238949ee9544876cb3e002f2d58e4ee7b5d docs-24_r01.zip diff --git a/pkgs/development/mobile/androidenv/sources.nix b/pkgs/development/mobile/androidenv/sources.nix index e4fe3cf0ff5d82a7d87bf1c26e47002c3587f742..cca132e277499e859dfcbf640b1bd4767778db5b 100644 --- a/pkgs/development/mobile/androidenv/sources.nix +++ b/pkgs/development/mobile/androidenv/sources.nix @@ -148,4 +148,37 @@ in }; }; + source_26 = buildSource { + name = "android-source-26"; + src = fetchurl { + url = https://dl.google.com/android/repository/sources-26_r01.zip; + sha1 = "2af701ee3223d580409288540b1d06932fd8f9b9"; + }; + meta = { + description = "Source code for Android API 26"; + }; + }; + + source_27 = buildSource { + name = "android-source-27"; + src = fetchurl { + url = https://dl.google.com/android/repository/sources-27_r01.zip; + sha1 = "7b714670561d08f54751af42aca929867b806596"; + }; + meta = { + description = "Source code for Android API 27"; + }; + }; + + source_28 = buildSource { + name = "android-source-28"; + src = fetchurl { + url = https://dl.google.com/android/repository/sources-28_r01.zip; + sha1 = "5610e0c24235ee3fa343c899ddd551be30315255"; + }; + meta = { + description = "Source code for Android API 28"; + }; + }; + } diff --git a/pkgs/development/mobile/androidenv/sys-img.xml b/pkgs/development/mobile/androidenv/sys-img.xml index 2a720918c23a22cc81d697088e9d0fee9564a6cb..d7c8dd9de9b3f5b3fa416913a587a8db5143e3df 100644 --- a/pkgs/development/mobile/androidenv/sys-img.xml +++ b/pkgs/development/mobile/androidenv/sys-img.xml @@ -1,6 +1,6 @@ - + Terms and Conditions This is the Android Software Development Kit License Agreement @@ -35,7 +35,7 @@ This is the Android Software Development Kit License Agreement 3.3 You agree that Google or third parties own all legal right, title and interest in and to the SDK, including any Intellectual Property Rights that subsist in the SDK. "Intellectual Property Rights" means any and all rights under patent law, copyright law, trade secret law, trademark law, and any and all other proprietary rights. Google reserves all rights not expressly granted to you. -3.4 You may not use the SDK for any purpose not expressly permitted by the License Agreement. Except to the extent required by applicable third party licenses, you may not: (a) copy (except for backup purposes), modify, adapt, redistribute, decompile, reverse engineer, disassemble, or create derivative works of the SDK or any part of the SDK; or (b) load any part of the SDK onto a mobile handset or any other hardware device except a personal computer, combine any part of the SDK with other software, or distribute any software or device incorporating a part of the SDK. +3.4 You may not use the SDK for any purpose not expressly permitted by the License Agreement. Except to the extent required by applicable third party licenses, you may not copy (except for backup purposes), modify, adapt, redistribute, decompile, reverse engineer, disassemble, or create derivative works of the SDK or any part of the SDK. 3.5 Use, reproduction and distribution of components of the SDK licensed under an open source software license are governed solely by the terms of that open source software license and not the License Agreement. @@ -411,7 +411,7 @@ ANY PRE-RELEASE MATERIALS ARE NON-QUALIFIED AND, AS SUCH, ARE PROVIDED “AS IS 4 - + 67918042 54680383118eb5c95a11e1cc2a14aa572c86ee69 armv7-10_r04.zip @@ -428,7 +428,7 @@ ANY PRE-RELEASE MATERIALS ARE NON-QUALIFIED AND, AS SUCH, ARE PROVIDED “AS IS 2 - + 99621822 d8991b0c06b18d7d6ed4169d67460ee1add6661b sysimg_armv7a-14_r02.zip @@ -445,7 +445,7 @@ ANY PRE-RELEASE MATERIALS ARE NON-QUALIFIED AND, AS SUCH, ARE PROVIDED “AS IS 4 - + 102079727 363223bd62f5afc0b2bd760b54ce9d26b31eacf1 armeabi-v7a-15_r04.zip @@ -462,7 +462,7 @@ ANY PRE-RELEASE MATERIALS ARE NON-QUALIFIED AND, AS SUCH, ARE PROVIDED “AS IS 4 - + 112608076 39c093ea755098f0ee79f607be7df9e54ba4943f sysimg_armv7a-16_r04.zip @@ -479,7 +479,7 @@ ANY PRE-RELEASE MATERIALS ARE NON-QUALIFIED AND, AS SUCH, ARE PROVIDED “AS IS 5 - + 124238679 7460e8110f4a87f9644f1bdb5511a66872d50fd9 armeabi-v7a-17_r05.zip @@ -496,7 +496,7 @@ ANY PRE-RELEASE MATERIALS ARE NON-QUALIFIED AND, AS SUCH, ARE PROVIDED “AS IS 4 - + 130394401 0bf34ecf4ddd53f6b1b7fe7dfa12f2887c17e642 armeabi-v7a-18_r04.zip @@ -513,7 +513,7 @@ ANY PRE-RELEASE MATERIALS ARE NON-QUALIFIED AND, AS SUCH, ARE PROVIDED “AS IS 5 - + 159871567 d1a5fd4f2e1c013c3d3d9bfe7e9db908c3ed56fa armeabi-v7a-19_r05.zip @@ -530,7 +530,7 @@ ANY PRE-RELEASE MATERIALS ARE NON-QUALIFIED AND, AS SUCH, ARE PROVIDED “AS IS 4 - + 187163871 8c606f81306564b65e41303d2603e4c42ded0d10 armeabi-v7a-21_r04.zip @@ -547,7 +547,7 @@ ANY PRE-RELEASE MATERIALS ARE NON-QUALIFIED AND, AS SUCH, ARE PROVIDED “AS IS 2 - + 194596267 2114ec015dbf3a16cbcb4f63e8a84a1b206a07a1 armeabi-v7a-22_r02.zip @@ -564,7 +564,7 @@ ANY PRE-RELEASE MATERIALS ARE NON-QUALIFIED AND, AS SUCH, ARE PROVIDED “AS IS 6 - + 238333358 7cf2ad756e54a3acfd81064b63cb0cb9dff2798d armeabi-v7a-23_r06.zip @@ -582,7 +582,7 @@ ANY PRE-RELEASE MATERIALS ARE NON-QUALIFIED AND, AS SUCH, ARE PROVIDED “AS IS 7 - + 283677512 3454546b4eed2d6c3dd06d47757d6da9f4176033 armeabi-v7a-24_r07.zip @@ -599,7 +599,7 @@ ANY PRE-RELEASE MATERIALS ARE NON-QUALIFIED AND, AS SUCH, ARE PROVIDED “AS IS 7 - + 384556503 e8ab2e49e4efe4b064232b33b5eeaded61437d7f arm64-v8a-24_r07.zip @@ -609,23 +609,6 @@ ANY PRE-RELEASE MATERIALS ARE NON-QUALIFIED AND, AS SUCH, ARE PROVIDED “AS IS arm64-v8a default - - - 15 - MIPS System Image - 1 - - - - 117503178 - a753bb4a6783124dad726c500ce9aec9d2c1b2d9 - sysimg_mips-15_r01.zip - - - - mips - default - 16 @@ -633,7 +616,7 @@ ANY PRE-RELEASE MATERIALS ARE NON-QUALIFIED AND, AS SUCH, ARE PROVIDED “AS IS 1 - + 122482530 67943c54fb3943943ffeb05fdd39c0b753681f6e sysimg_mips-16_r04.zip @@ -650,7 +633,7 @@ ANY PRE-RELEASE MATERIALS ARE NON-QUALIFIED AND, AS SUCH, ARE PROVIDED “AS IS 1 - + 131781761 f0c6e153bd584c29e51b5c9723cfbf30f996a05d sysimg_mips-17_r01.zip @@ -667,7 +650,7 @@ ANY PRE-RELEASE MATERIALS ARE NON-QUALIFIED AND, AS SUCH, ARE PROVIDED “AS IS 4 - + 75382637 655ffc5cc89dd45a3aca154b254009016e473aeb x86-10_r04.zip @@ -684,7 +667,7 @@ ANY PRE-RELEASE MATERIALS ARE NON-QUALIFIED AND, AS SUCH, ARE PROVIDED “AS IS 4 - + 115324561 e45c728b64881c0e86529a8f7ea9c103a3cd14c1 x86-15_r04.zip @@ -695,16 +678,16 @@ ANY PRE-RELEASE MATERIALS ARE NON-QUALIFIED AND, AS SUCH, ARE PROVIDED “AS IS default - + 16 Intel x86 Atom System Image - 5 + 6 - - 134339698 - 7ea16da3a8fdb880b1b290190fcc1bde2821c1e0 - x86-16_r05.zip + + 134926152 + bf1bf8c5591346118d2235da1ad20e7be8a3e9cd + x86-16_r06.zip @@ -712,16 +695,16 @@ ANY PRE-RELEASE MATERIALS ARE NON-QUALIFIED AND, AS SUCH, ARE PROVIDED “AS IS default - + 17 Intel x86 Atom System Image - 3 + 4 - - 142951842 - eb30274460ff0d61f3ed37862b567811bebd8270 - x86-17_r03.zip + + 143278662 + 03c6d022ab2dcbbcf655d78ba5ccb0431cadcaec + x86-17_r04.zip @@ -735,7 +718,7 @@ ANY PRE-RELEASE MATERIALS ARE NON-QUALIFIED AND, AS SUCH, ARE PROVIDED “AS IS 3 - + 149657535 03a0cb23465c3de15215934a1dbc9715b56e9458 x86-18_r03.zip @@ -752,7 +735,7 @@ ANY PRE-RELEASE MATERIALS ARE NON-QUALIFIED AND, AS SUCH, ARE PROVIDED “AS IS 6 - + 185886274 2ac82153aae97f7eae4c5a0761224fe04321d03d x86-19_r06.zip @@ -769,7 +752,7 @@ ANY PRE-RELEASE MATERIALS ARE NON-QUALIFIED AND, AS SUCH, ARE PROVIDED “AS IS 5 - + 208212529 00f0eb0a1003efe3316347f762e20a85d8749cff x86-21_r05.zip @@ -786,7 +769,7 @@ ANY PRE-RELEASE MATERIALS ARE NON-QUALIFIED AND, AS SUCH, ARE PROVIDED “AS IS 6 - + 214268954 e33e2a6cc3f1cc56b2019dbef3917d2eeb26f54e x86-22_r06.zip @@ -803,7 +786,7 @@ ANY PRE-RELEASE MATERIALS ARE NON-QUALIFIED AND, AS SUCH, ARE PROVIDED “AS IS 10 - + 260804863 f6c3e3dd7bd951454795aa75c3a145fd05ac25bb x86-23_r10.zip @@ -820,7 +803,7 @@ ANY PRE-RELEASE MATERIALS ARE NON-QUALIFIED AND, AS SUCH, ARE PROVIDED “AS IS 8 - + 313489224 c1cae7634b0216c0b5990f2c144eb8ca948e3511 x86-24_r08.zip @@ -830,6 +813,77 @@ ANY PRE-RELEASE MATERIALS ARE NON-QUALIFIED AND, AS SUCH, ARE PROVIDED “AS IS x86 default + + + 25 + Intel x86 Atom System Image + 1 + + + + 316695942 + 78ce7eb1387d598685633b9f7cbb300c3d3aeb5f + x86-25_r01.zip + + + + x86 + default + + + + 26 + Intel x86 Atom System Image + 1 + + + + 350195807 + e613d6e0da668e30daf547f3c6627a6352846f90 + x86-26_r01.zip + + + + x86 + default + Default Android System Image + + + + 27 + Intel x86 Atom System Image + 1 + + + + 360984187 + 4ec990fac7b62958decd12e18a4cd389dfe7c582 + x86-27_r01.zip + + + + x86 + default + Default Android System Image + + + + 28 + Intel x86 Atom System Image + 4 + + + + 437320152 + ce03c42d80c0fc6dc47f6455dbee7aa275d02780 + x86-28_r04.zip + + + + x86 + default + Default Android System Image + 21 @@ -837,7 +891,7 @@ ANY PRE-RELEASE MATERIALS ARE NON-QUALIFIED AND, AS SUCH, ARE PROVIDED “AS IS 5 - + 292623982 9078a095825a69e5e215713f0866c83cef65a342 x86_64-21_r05.zip @@ -854,7 +908,7 @@ ANY PRE-RELEASE MATERIALS ARE NON-QUALIFIED AND, AS SUCH, ARE PROVIDED “AS IS 6 - + 299976630 5db3b27f78cd9c4c5092b1cad5a5dd479fb5b2e4 x86_64-22_r06.zip @@ -871,7 +925,7 @@ ANY PRE-RELEASE MATERIALS ARE NON-QUALIFIED AND, AS SUCH, ARE PROVIDED “AS IS 10 - + 365009313 7cbc291483ca07dc67b71268c5f08a5755f50f51 x86_64-23_r10.zip @@ -888,7 +942,7 @@ ANY PRE-RELEASE MATERIALS ARE NON-QUALIFIED AND, AS SUCH, ARE PROVIDED “AS IS 8 - + 419261998 f6559e1949a5879f31a9662f4f0e50ad60181684 x86_64-24_r08.zip @@ -898,4 +952,75 @@ ANY PRE-RELEASE MATERIALS ARE NON-QUALIFIED AND, AS SUCH, ARE PROVIDED “AS IS x86_64 default + + + 25 + Intel x86 Atom_64 System Image + 1 + + + + 422702097 + 7093d7b39216020226ff430a3b7b81c94d31ad37 + x86_64-25_r01.zip + + + + x86_64 + default + + + + 26 + Intel x86 Atom_64 System Image + 1 + + + + 474178332 + 432f149c048bffce7f9de526ec65b336daf7a0a3 + x86_64-26_r01.zip + + + + x86_64 + default + Default Android System Image + + + + 27 + Intel x86 Atom_64 System Image + 1 + + + + 491675204 + 2878261011a59ca3de29dc5b457a495fdb268d60 + x86_64-27_r01.zip + + + + x86_64 + default + Default Android System Image + + + + 28 + Intel x86 Atom_64 System Image + 4 + + + + 564792723 + d47a85c8f4e9fd57df97814ad8884eeb0f3a0ef0 + x86_64-28_r04.zip + + + + x86_64 + default + Default Android System Image + diff --git a/pkgs/development/mobile/androidenv/sysimages.nix b/pkgs/development/mobile/androidenv/sysimages.nix index c5d075d630760df5eaea4365367b402b7683343f..0ad09a0255628b85126125be63a121bf3cd001d6 100644 --- a/pkgs/development/mobile/androidenv/sysimages.nix +++ b/pkgs/development/mobile/androidenv/sysimages.nix @@ -47,14 +47,6 @@ in }; }; - sysimg_mips_15 = buildSystemImage { - name = "sysimg-mips-15"; - src = fetchurl { - url = https://dl.google.com/android/repository/sys-img/android/sysimg_mips-15_r01.zip; - sha1 = "a753bb4a6783124dad726c500ce9aec9d2c1b2d9"; - }; - }; - sysimg_x86_15 = buildSystemImage { name = "sysimg-x86-15"; src = fetchurl { @@ -82,8 +74,8 @@ in sysimg_x86_16 = buildSystemImage { name = "sysimg-x86-16"; src = fetchurl { - url = https://dl.google.com/android/repository/sys-img/android/x86-16_r05.zip; - sha1 = "7ea16da3a8fdb880b1b290190fcc1bde2821c1e0"; + url = https://dl.google.com/android/repository/sys-img/android/x86-16_r06.zip; + sha1 = "bf1bf8c5591346118d2235da1ad20e7be8a3e9cd"; }; }; @@ -106,8 +98,8 @@ in sysimg_x86_17 = buildSystemImage { name = "sysimg-x86-17"; src = fetchurl { - url = https://dl.google.com/android/repository/sys-img/android/x86-17_r03.zip; - sha1 = "eb30274460ff0d61f3ed37862b567811bebd8270"; + url = https://dl.google.com/android/repository/sys-img/android/x86-17_r04.zip; + sha1 = "03c6d022ab2dcbbcf655d78ba5ccb0431cadcaec"; }; }; @@ -250,17 +242,64 @@ in sysimg_x86_25 = buildSystemImage { name = "sysimg-x86-25"; src = fetchurl { - url = https://dl.google.com/android/repository/sys-img/android/x86-25_r03.zip; - sha1 = "7dd19cfee4e43a1f60e0f5f058404d92d9544b33"; + url = https://dl.google.com/android/repository/sys-img/android/x86-25_r01.zip; + sha1 = "78ce7eb1387d598685633b9f7cbb300c3d3aeb5f"; }; }; sysimg_x86_64_25 = buildSystemImage { name = "sysimg-x86_64-25"; src = fetchurl { - url = https://dl.google.com/android/repository/sys-img/android/x86_64-25_r03.zip; - sha1 = "4593ee04811df21c339f3374fc5917843db06f8d"; + url = https://dl.google.com/android/repository/sys-img/android/x86_64-25_r01.zip; + sha1 = "7093d7b39216020226ff430a3b7b81c94d31ad37"; }; }; -} + sysimg_x86_26 = buildSystemImage { + name = "sysimg-x86-26"; + src = fetchurl { + url = https://dl.google.com/android/repository/sys-img/android/x86-26_r01.zip; + sha1 = "e613d6e0da668e30daf547f3c6627a6352846f90"; + }; + }; + + sysimg_x86_64_26 = buildSystemImage { + name = "sysimg-x86_64-26"; + src = fetchurl { + url = https://dl.google.com/android/repository/sys-img/android/x86_64-26_r01.zip; + sha1 = "432f149c048bffce7f9de526ec65b336daf7a0a3"; + }; + }; + + sysimg_x86_27 = buildSystemImage { + name = "sysimg-x86-27"; + src = fetchurl { + url = https://dl.google.com/android/repository/sys-img/android/x86-27_r01.zip; + sha1 = "4ec990fac7b62958decd12e18a4cd389dfe7c582"; + }; + }; + + sysimg_x86_64_27 = buildSystemImage { + name = "sysimg-x86_64-27"; + src = fetchurl { + url = https://dl.google.com/android/repository/sys-img/android/x86_64-27_r01.zip; + sha1 = "2878261011a59ca3de29dc5b457a495fdb268d60"; + }; + }; + + sysimg_x86_28 = buildSystemImage { + name = "sysimg-x86-28"; + src = fetchurl { + url = https://dl.google.com/android/repository/sys-img/android/x86-28_r04.zip; + sha1 = "ce03c42d80c0fc6dc47f6455dbee7aa275d02780"; + }; + }; + + sysimg_x86_64_28 = buildSystemImage { + name = "sysimg-x86_64-28"; + src = fetchurl { + url = https://dl.google.com/android/repository/sys-img/android/x86_64-28_r04.zip; + sha1 = "d47a85c8f4e9fd57df97814ad8884eeb0f3a0ef0"; + }; + }; +} diff --git a/pkgs/development/mobile/xpwn/default.nix b/pkgs/development/mobile/xpwn/default.nix index d5ffb7f6c017e484b8877a19baabd3efc40bd847..d62902e4f6e4ddcde075015a51d6d1b185cbb941 100644 --- a/pkgs/development/mobile/xpwn/default.nix +++ b/pkgs/development/mobile/xpwn/default.nix @@ -20,10 +20,6 @@ stdenv.mkDerivation { buildInputs = [ cmake zlib libpng bzip2 libusb openssl ]; - cmakeFlags = [ - "-DCMAKE_OSX_DEPLOYMENT_TARGET=" - ]; - meta = with stdenv.lib; { homepage = "http://planetbeing.lighthouseapp.com/projects/15246-xpwn"; description = "Custom NOR firmware loader/IPSW generator for the iPhone"; diff --git a/pkgs/development/node-packages/default-v8.nix b/pkgs/development/node-packages/default-v8.nix index 020992c8684418e9d3fadb82ed393d771af059cb..f7d3e3c908f8fa60692ee6470ef2dd78c512b0d6 100644 --- a/pkgs/development/node-packages/default-v8.nix +++ b/pkgs/development/node-packages/default-v8.nix @@ -49,6 +49,10 @@ nodePackages // { buildInputs = [ pkgs.phantomjs2 ]; }; + git-ssb = nodePackages.git-ssb.override { + buildInputs = [ nodePackages.node-gyp-build ]; + }; + node-inspector = nodePackages.node-inspector.override { buildInputs = [ nodePackages.node-pre-gyp ]; }; @@ -82,6 +86,10 @@ nodePackages // { ''; }; + scuttlebot = nodePackages.scuttlebot.override { + buildInputs = [ pkgs.automake pkgs.autoconf nodePackages.node-gyp-build ]; + }; + statsd = nodePackages.statsd.override { # broken with node v8, dead upstream, # see #45946 and https://github.com/etsy/statsd/issues/646 diff --git a/pkgs/development/node-packages/node-packages-v10.nix b/pkgs/development/node-packages/node-packages-v10.nix index e94e8bfff1edab27d4bbc5174585404361029f2a..d029fc74d696c61d66ab492d135592bdea241672 100644 --- a/pkgs/development/node-packages/node-packages-v10.nix +++ b/pkgs/development/node-packages/node-packages-v10.nix @@ -283,15 +283,6 @@ let sha1 = "4bc0373c164bc3291b4d368c829cf1a80a59dca0"; }; }; - "combined-stream-1.0.6" = { - name = "combined-stream"; - packageName = "combined-stream"; - version = "1.0.6"; - src = fetchurl { - url = "http://registry.npmjs.org/combined-stream/-/combined-stream-1.0.6.tgz"; - sha1 = "723e7df6e801ac5613113a7e445a9b69cb632818"; - }; - }; "combined-stream-1.0.7" = { name = "combined-stream"; packageName = "combined-stream"; @@ -522,7 +513,7 @@ let packageName = "fast-deep-equal"; version = "1.1.0"; src = fetchurl { - url = "https://registry.npmjs.org/fast-deep-equal/-/fast-deep-equal-1.1.0.tgz"; + url = "http://registry.npmjs.org/fast-deep-equal/-/fast-deep-equal-1.1.0.tgz"; sha1 = "c053477817c86b51daa853c81e059b733d023614"; }; }; @@ -598,13 +589,13 @@ let sha1 = "fbc71f0c41adeb37f96c577ad1ed42d8fdacca91"; }; }; - "form-data-2.3.2" = { + "form-data-2.3.3" = { name = "form-data"; packageName = "form-data"; - version = "2.3.2"; + version = "2.3.3"; src = fetchurl { - url = "https://registry.npmjs.org/form-data/-/form-data-2.3.2.tgz"; - sha1 = "4970498be604c20c005d4f5c23aecd21d6b49099"; + url = "https://registry.npmjs.org/form-data/-/form-data-2.3.3.tgz"; + sha512 = "1lLKB2Mu3aGP1Q/2eCOx0fNbRMe7XdwktwOruhfqqd0rIJWwN4Dh+E3hrPSlDCXnSR7UtZ1N38rVXm+6+MEhJQ=="; }; }; "fragment-cache-0.2.1" = { @@ -697,13 +688,13 @@ let sha1 = "dbf743c6c14992593c655568cb66ed32c0122ebe"; }; }; - "graceful-fs-4.1.11" = { + "graceful-fs-4.1.15" = { name = "graceful-fs"; packageName = "graceful-fs"; - version = "4.1.11"; + version = "4.1.15"; src = fetchurl { - url = "https://registry.npmjs.org/graceful-fs/-/graceful-fs-4.1.11.tgz"; - sha1 = "0e8bdfe4d1ddb8854d64e04ea7c00e2a026e5658"; + url = "https://registry.npmjs.org/graceful-fs/-/graceful-fs-4.1.15.tgz"; + sha512 = "6uHUhOPEBgQ24HM+r6b/QwWfZq+yiFcipKFrOFiBEnWdy5sdzYoi+pJeQaPI5qOLRFqWmAXUPQNsielzdLoecA=="; }; }; "grunt-known-options-1.1.1" = { @@ -1192,22 +1183,22 @@ let sha512 = "MWikgl9n9M3w+bpsY3He8L+w9eF9338xRl8IAO5viDizwSzziFEyUzo2xrrloB64ADbTf8uA8vRqqttDTOmccg=="; }; }; - "mime-db-1.36.0" = { + "mime-db-1.37.0" = { name = "mime-db"; packageName = "mime-db"; - version = "1.36.0"; + version = "1.37.0"; src = fetchurl { - url = "https://registry.npmjs.org/mime-db/-/mime-db-1.36.0.tgz"; - sha512 = "L+xvyD9MkoYMXb1jAmzI/lWYAxAMCPvIBSWur0PZ5nOf5euahRLVqH//FKW9mWp2lkqUgYiXPgkzfMUFi4zVDw=="; + url = "https://registry.npmjs.org/mime-db/-/mime-db-1.37.0.tgz"; + sha512 = "R3C4db6bgQhlIhPU48fUtdVmKnflq+hRdad7IyKhtFj06VPNVdk2RhiYL3UjQIlso8L+YxAtFkobT0VK+S/ybg=="; }; }; - "mime-types-2.1.20" = { + "mime-types-2.1.21" = { name = "mime-types"; packageName = "mime-types"; - version = "2.1.20"; + version = "2.1.21"; src = fetchurl { - url = "https://registry.npmjs.org/mime-types/-/mime-types-2.1.20.tgz"; - sha512 = "HrkrPaP9vGuWbLK1B1FfgAkbqNjIuy4eHlIYnFi7kamZyLLrGlo2mpcx0bBmNpKqBtYtAfGbodDddIgddSJC2A=="; + url = "https://registry.npmjs.org/mime-types/-/mime-types-2.1.21.tgz"; + sha512 = "3iL6DbwpyLzjR3xHSFNFeb9Nz/M8WDkX33t1GFQnFOllWk8pOrh/LSrB5OXlnlW5P9LH73X6loW/eogc+F5lJg=="; }; }; "minimatch-3.0.4" = { @@ -1237,13 +1228,13 @@ let sha1 = "a35008b20f41383eec1fb914f4cd5df79a264284"; }; }; - "minipass-2.3.4" = { + "minipass-2.3.5" = { name = "minipass"; packageName = "minipass"; - version = "2.3.4"; + version = "2.3.5"; src = fetchurl { - url = "https://registry.npmjs.org/minipass/-/minipass-2.3.4.tgz"; - sha512 = "mlouk1OHlaUE8Odt1drMtG1bAJA4ZA6B/ehysgV0LUIrDHdKgo1KorZq3pK0b/7Z7LJIQ12MNM6aC+Tn6lUZ5w=="; + url = "https://registry.npmjs.org/minipass/-/minipass-2.3.5.tgz"; + sha512 = "Gi1W4k059gyRbyVUZQ4mEqLm0YIUiGYfvxhF6SIlk3ui1WVxMTGfGdQ2SInh3PDrRTVvPKgULkpJtT4RH10+VA=="; }; }; "minizlib-1.1.1" = { @@ -1692,7 +1683,7 @@ let packageName = "safe-regex"; version = "1.1.0"; src = fetchurl { - url = "https://registry.npmjs.org/safe-regex/-/safe-regex-1.1.0.tgz"; + url = "http://registry.npmjs.org/safe-regex/-/safe-regex-1.1.0.tgz"; sha1 = "40a3669f3b077d1e943d44629e157dd48023bf2e"; }; }; @@ -1831,13 +1822,13 @@ let sha512 = "NzNVhJDYpwceVVii8/Hu6DKfD2G+NrQHlS/V/qgv763EYudVwEcMQNxd2lh+0VrUByXN/oJkl5grOhYWvQUYiw=="; }; }; - "sshpk-1.15.1" = { + "sshpk-1.15.2" = { name = "sshpk"; packageName = "sshpk"; - version = "1.15.1"; + version = "1.15.2"; src = fetchurl { - url = "https://registry.npmjs.org/sshpk/-/sshpk-1.15.1.tgz"; - sha512 = "mSdgNUaidk+dRU5MhYtN9zebdzF2iG0cNPWy8HG+W8y+fT1JnSkh0fzzpjOa0L7P8i1Rscz38t0h4gPcKz43xA=="; + url = "https://registry.npmjs.org/sshpk/-/sshpk-1.15.2.tgz"; + sha512 = "Ra/OXQtuh0/enyl4ETZAfTaeksa6BXks5ZcjpSUNrjBr0DvrJKX+1fsKDPpT9TBXgHAFsa4510aNVgI8g/+SzA=="; }; }; "static-extend-0.1.2" = { @@ -1890,17 +1881,17 @@ let packageName = "tar"; version = "2.2.1"; src = fetchurl { - url = "https://registry.npmjs.org/tar/-/tar-2.2.1.tgz"; + url = "http://registry.npmjs.org/tar/-/tar-2.2.1.tgz"; sha1 = "8e4d2a256c0e2185c6b18ad694aec968b83cb1d1"; }; }; - "tar-4.4.6" = { + "tar-4.4.7" = { name = "tar"; packageName = "tar"; - version = "4.4.6"; + version = "4.4.7"; src = fetchurl { - url = "https://registry.npmjs.org/tar/-/tar-4.4.6.tgz"; - sha512 = "tMkTnh9EdzxyfW+6GK6fCahagXsnYk6kE6S9Gr9pjVdys769+laCTbodXDhPAjzVtEBazRgP0gYqOjnk9dQzLg=="; + url = "https://registry.npmjs.org/tar/-/tar-4.4.7.tgz"; + sha512 = "mR3MzsCdN0IEWjZRuF/J9gaWHnTwOvzjqPTcvi1xXgfKTDQRp39gRETPQEfPByAdEOGmZfx1HrRsn8estaEvtA=="; }; }; "to-object-path-0.3.0" = { @@ -2020,13 +2011,13 @@ let sha512 = "yXJmeNaw3DnnKAOKJE51sL/ZaYfWJRl1pK9dr19YFCu0ObS231AB1/LbqTKRAQ5kw8A90rA6fr4riOUpTZvQZA=="; }; }; - "v8flags-3.0.2" = { + "v8flags-3.1.1" = { name = "v8flags"; packageName = "v8flags"; - version = "3.0.2"; + version = "3.1.1"; src = fetchurl { - url = "https://registry.npmjs.org/v8flags/-/v8flags-3.0.2.tgz"; - sha512 = "6sgSKoFw1UpUPd3cFdF7QGnrH6tDeBgW1F3v9gy8gLY0mlbiBXq8soy8aQpY6xeeCjH5K+JvC62Acp7gtl7wWA=="; + url = "https://registry.npmjs.org/v8flags/-/v8flags-3.1.1.tgz"; + sha512 = "iw/1ViSEaff8NJ3HLyEjawk/8hjJib3E7pvG4pddVXfUg1983s3VGsiClDjhK64MQVDGqc1Q8r18S4VKQZS9EQ=="; }; }; "verror-1.10.0" = { @@ -2114,10 +2105,10 @@ in grunt-cli = nodeEnv.buildNodePackage { name = "grunt-cli"; packageName = "grunt-cli"; - version = "1.3.1"; + version = "1.3.2"; src = fetchurl { - url = "https://registry.npmjs.org/grunt-cli/-/grunt-cli-1.3.1.tgz"; - sha512 = "UwBRu/QpAjDc53DRLEkyilFdL0zenpxu+fddTIlsF/KJqdNcHaQmvyu1W3cDesZ9rqqZdKK5A8+QDIyLUEWoZQ=="; + url = "https://registry.npmjs.org/grunt-cli/-/grunt-cli-1.3.2.tgz"; + sha512 = "8OHDiZZkcptxVXtMfDxJvmN7MVJNE8L/yIcPb4HB7TlyFD1kDvjHrb62uhySsU14wJx9ORMnTuhRMQ40lH/orQ=="; }; dependencies = [ sources."abbrev-1.1.1" @@ -2369,7 +2360,7 @@ in }) sources."urix-0.1.0" sources."use-3.1.1" - sources."v8flags-3.0.2" + sources."v8flags-3.1.1" sources."which-1.3.1" ]; buildInputs = globalBuildInputs; @@ -2420,17 +2411,13 @@ in sources."fast-deep-equal-1.1.0" sources."fast-json-stable-stringify-2.0.0" sources."forever-agent-0.6.1" - (sources."form-data-2.3.2" // { - dependencies = [ - sources."combined-stream-1.0.6" - ]; - }) + sources."form-data-2.3.3" sources."fs.realpath-1.0.0" sources."fstream-1.0.11" sources."gauge-2.7.4" sources."getpass-0.1.7" sources."glob-7.1.3" - sources."graceful-fs-4.1.11" + sources."graceful-fs-4.1.15" sources."har-schema-2.0.0" sources."har-validator-5.1.0" sources."has-unicode-2.0.1" @@ -2447,8 +2434,8 @@ in sources."json-schema-traverse-0.3.1" sources."json-stringify-safe-5.0.1" sources."jsprim-1.4.1" - sources."mime-db-1.36.0" - sources."mime-types-2.1.20" + sources."mime-db-1.37.0" + sources."mime-types-2.1.21" sources."minimatch-3.0.4" sources."minimist-0.0.8" sources."mkdirp-0.5.1" @@ -2475,7 +2462,7 @@ in sources."semver-5.3.0" sources."set-blocking-2.0.0" sources."signal-exit-3.0.2" - sources."sshpk-1.15.1" + sources."sshpk-1.15.2" sources."string-width-1.0.2" sources."string_decoder-1.1.1" sources."strip-ansi-3.0.1" @@ -2554,7 +2541,7 @@ in sources."isarray-1.0.0" sources."minimatch-3.0.4" sources."minimist-0.0.8" - sources."minipass-2.3.4" + sources."minipass-2.3.5" sources."minizlib-1.1.1" sources."mkdirp-0.5.1" sources."ms-2.0.0" @@ -2588,7 +2575,7 @@ in sources."string_decoder-1.1.1" sources."strip-ansi-3.0.1" sources."strip-json-comments-2.0.1" - sources."tar-4.4.6" + sources."tar-4.4.7" sources."util-deprecate-1.0.2" sources."wide-align-1.1.3" sources."wrappy-1.0.2" @@ -2606,10 +2593,10 @@ in pnpm = nodeEnv.buildNodePackage { name = "pnpm"; packageName = "pnpm"; - version = "2.16.3"; + version = "2.17.7"; src = fetchurl { - url = "https://registry.npmjs.org/pnpm/-/pnpm-2.16.3.tgz"; - sha512 = "W63qZOC9YGr+33JYvZjvhzvYL4YKT2gAywDJQrHvKTL6vmnnSh+GdM3ZdGIIZ6A57YB3NgvQaq/BJ2uYjwn3ZQ=="; + url = "https://registry.npmjs.org/pnpm/-/pnpm-2.17.7.tgz"; + sha512 = "FwZFpKSL4BNu1IGIScveHqZALpm6jSF7QR90CZXW4RfKaLpNYcIkkFC9iPBT4AdpPSv1UR/gYUWyQdTZBx2a5g=="; }; buildInputs = globalBuildInputs; meta = { diff --git a/pkgs/development/node-packages/node-packages-v6.nix b/pkgs/development/node-packages/node-packages-v6.nix index dc028435ad0a318f38d7a3ba94ff3ac83f669e1f..bdf4997c17433b2fd251224524b9ff597d09f124 100644 --- a/pkgs/development/node-packages/node-packages-v6.nix +++ b/pkgs/development/node-packages/node-packages-v6.nix @@ -283,15 +283,6 @@ let sha1 = "4bc0373c164bc3291b4d368c829cf1a80a59dca0"; }; }; - "combined-stream-1.0.6" = { - name = "combined-stream"; - packageName = "combined-stream"; - version = "1.0.6"; - src = fetchurl { - url = "http://registry.npmjs.org/combined-stream/-/combined-stream-1.0.6.tgz"; - sha1 = "723e7df6e801ac5613113a7e445a9b69cb632818"; - }; - }; "combined-stream-1.0.7" = { name = "combined-stream"; packageName = "combined-stream"; @@ -522,7 +513,7 @@ let packageName = "fast-deep-equal"; version = "1.1.0"; src = fetchurl { - url = "https://registry.npmjs.org/fast-deep-equal/-/fast-deep-equal-1.1.0.tgz"; + url = "http://registry.npmjs.org/fast-deep-equal/-/fast-deep-equal-1.1.0.tgz"; sha1 = "c053477817c86b51daa853c81e059b733d023614"; }; }; @@ -598,13 +589,13 @@ let sha1 = "fbc71f0c41adeb37f96c577ad1ed42d8fdacca91"; }; }; - "form-data-2.3.2" = { + "form-data-2.3.3" = { name = "form-data"; packageName = "form-data"; - version = "2.3.2"; + version = "2.3.3"; src = fetchurl { - url = "https://registry.npmjs.org/form-data/-/form-data-2.3.2.tgz"; - sha1 = "4970498be604c20c005d4f5c23aecd21d6b49099"; + url = "https://registry.npmjs.org/form-data/-/form-data-2.3.3.tgz"; + sha512 = "1lLKB2Mu3aGP1Q/2eCOx0fNbRMe7XdwktwOruhfqqd0rIJWwN4Dh+E3hrPSlDCXnSR7UtZ1N38rVXm+6+MEhJQ=="; }; }; "fragment-cache-0.2.1" = { @@ -697,13 +688,13 @@ let sha1 = "dbf743c6c14992593c655568cb66ed32c0122ebe"; }; }; - "graceful-fs-4.1.11" = { + "graceful-fs-4.1.15" = { name = "graceful-fs"; packageName = "graceful-fs"; - version = "4.1.11"; + version = "4.1.15"; src = fetchurl { - url = "https://registry.npmjs.org/graceful-fs/-/graceful-fs-4.1.11.tgz"; - sha1 = "0e8bdfe4d1ddb8854d64e04ea7c00e2a026e5658"; + url = "https://registry.npmjs.org/graceful-fs/-/graceful-fs-4.1.15.tgz"; + sha512 = "6uHUhOPEBgQ24HM+r6b/QwWfZq+yiFcipKFrOFiBEnWdy5sdzYoi+pJeQaPI5qOLRFqWmAXUPQNsielzdLoecA=="; }; }; "grunt-known-options-1.1.1" = { @@ -1192,22 +1183,22 @@ let sha512 = "MWikgl9n9M3w+bpsY3He8L+w9eF9338xRl8IAO5viDizwSzziFEyUzo2xrrloB64ADbTf8uA8vRqqttDTOmccg=="; }; }; - "mime-db-1.36.0" = { + "mime-db-1.37.0" = { name = "mime-db"; packageName = "mime-db"; - version = "1.36.0"; + version = "1.37.0"; src = fetchurl { - url = "https://registry.npmjs.org/mime-db/-/mime-db-1.36.0.tgz"; - sha512 = "L+xvyD9MkoYMXb1jAmzI/lWYAxAMCPvIBSWur0PZ5nOf5euahRLVqH//FKW9mWp2lkqUgYiXPgkzfMUFi4zVDw=="; + url = "https://registry.npmjs.org/mime-db/-/mime-db-1.37.0.tgz"; + sha512 = "R3C4db6bgQhlIhPU48fUtdVmKnflq+hRdad7IyKhtFj06VPNVdk2RhiYL3UjQIlso8L+YxAtFkobT0VK+S/ybg=="; }; }; - "mime-types-2.1.20" = { + "mime-types-2.1.21" = { name = "mime-types"; packageName = "mime-types"; - version = "2.1.20"; + version = "2.1.21"; src = fetchurl { - url = "https://registry.npmjs.org/mime-types/-/mime-types-2.1.20.tgz"; - sha512 = "HrkrPaP9vGuWbLK1B1FfgAkbqNjIuy4eHlIYnFi7kamZyLLrGlo2mpcx0bBmNpKqBtYtAfGbodDddIgddSJC2A=="; + url = "https://registry.npmjs.org/mime-types/-/mime-types-2.1.21.tgz"; + sha512 = "3iL6DbwpyLzjR3xHSFNFeb9Nz/M8WDkX33t1GFQnFOllWk8pOrh/LSrB5OXlnlW5P9LH73X6loW/eogc+F5lJg=="; }; }; "minimatch-3.0.4" = { @@ -1237,13 +1228,13 @@ let sha1 = "a35008b20f41383eec1fb914f4cd5df79a264284"; }; }; - "minipass-2.3.4" = { + "minipass-2.3.5" = { name = "minipass"; packageName = "minipass"; - version = "2.3.4"; + version = "2.3.5"; src = fetchurl { - url = "https://registry.npmjs.org/minipass/-/minipass-2.3.4.tgz"; - sha512 = "mlouk1OHlaUE8Odt1drMtG1bAJA4ZA6B/ehysgV0LUIrDHdKgo1KorZq3pK0b/7Z7LJIQ12MNM6aC+Tn6lUZ5w=="; + url = "https://registry.npmjs.org/minipass/-/minipass-2.3.5.tgz"; + sha512 = "Gi1W4k059gyRbyVUZQ4mEqLm0YIUiGYfvxhF6SIlk3ui1WVxMTGfGdQ2SInh3PDrRTVvPKgULkpJtT4RH10+VA=="; }; }; "minizlib-1.1.1" = { @@ -1692,7 +1683,7 @@ let packageName = "safe-regex"; version = "1.1.0"; src = fetchurl { - url = "https://registry.npmjs.org/safe-regex/-/safe-regex-1.1.0.tgz"; + url = "http://registry.npmjs.org/safe-regex/-/safe-regex-1.1.0.tgz"; sha1 = "40a3669f3b077d1e943d44629e157dd48023bf2e"; }; }; @@ -1831,13 +1822,13 @@ let sha512 = "NzNVhJDYpwceVVii8/Hu6DKfD2G+NrQHlS/V/qgv763EYudVwEcMQNxd2lh+0VrUByXN/oJkl5grOhYWvQUYiw=="; }; }; - "sshpk-1.15.1" = { + "sshpk-1.15.2" = { name = "sshpk"; packageName = "sshpk"; - version = "1.15.1"; + version = "1.15.2"; src = fetchurl { - url = "https://registry.npmjs.org/sshpk/-/sshpk-1.15.1.tgz"; - sha512 = "mSdgNUaidk+dRU5MhYtN9zebdzF2iG0cNPWy8HG+W8y+fT1JnSkh0fzzpjOa0L7P8i1Rscz38t0h4gPcKz43xA=="; + url = "https://registry.npmjs.org/sshpk/-/sshpk-1.15.2.tgz"; + sha512 = "Ra/OXQtuh0/enyl4ETZAfTaeksa6BXks5ZcjpSUNrjBr0DvrJKX+1fsKDPpT9TBXgHAFsa4510aNVgI8g/+SzA=="; }; }; "static-extend-0.1.2" = { @@ -1890,17 +1881,17 @@ let packageName = "tar"; version = "2.2.1"; src = fetchurl { - url = "https://registry.npmjs.org/tar/-/tar-2.2.1.tgz"; + url = "http://registry.npmjs.org/tar/-/tar-2.2.1.tgz"; sha1 = "8e4d2a256c0e2185c6b18ad694aec968b83cb1d1"; }; }; - "tar-4.4.6" = { + "tar-4.4.7" = { name = "tar"; packageName = "tar"; - version = "4.4.6"; + version = "4.4.7"; src = fetchurl { - url = "https://registry.npmjs.org/tar/-/tar-4.4.6.tgz"; - sha512 = "tMkTnh9EdzxyfW+6GK6fCahagXsnYk6kE6S9Gr9pjVdys769+laCTbodXDhPAjzVtEBazRgP0gYqOjnk9dQzLg=="; + url = "https://registry.npmjs.org/tar/-/tar-4.4.7.tgz"; + sha512 = "mR3MzsCdN0IEWjZRuF/J9gaWHnTwOvzjqPTcvi1xXgfKTDQRp39gRETPQEfPByAdEOGmZfx1HrRsn8estaEvtA=="; }; }; "to-object-path-0.3.0" = { @@ -2020,13 +2011,13 @@ let sha512 = "yXJmeNaw3DnnKAOKJE51sL/ZaYfWJRl1pK9dr19YFCu0ObS231AB1/LbqTKRAQ5kw8A90rA6fr4riOUpTZvQZA=="; }; }; - "v8flags-3.0.2" = { + "v8flags-3.1.1" = { name = "v8flags"; packageName = "v8flags"; - version = "3.0.2"; + version = "3.1.1"; src = fetchurl { - url = "https://registry.npmjs.org/v8flags/-/v8flags-3.0.2.tgz"; - sha512 = "6sgSKoFw1UpUPd3cFdF7QGnrH6tDeBgW1F3v9gy8gLY0mlbiBXq8soy8aQpY6xeeCjH5K+JvC62Acp7gtl7wWA=="; + url = "https://registry.npmjs.org/v8flags/-/v8flags-3.1.1.tgz"; + sha512 = "iw/1ViSEaff8NJ3HLyEjawk/8hjJib3E7pvG4pddVXfUg1983s3VGsiClDjhK64MQVDGqc1Q8r18S4VKQZS9EQ=="; }; }; "verror-1.10.0" = { @@ -2114,10 +2105,10 @@ in grunt-cli = nodeEnv.buildNodePackage { name = "grunt-cli"; packageName = "grunt-cli"; - version = "1.3.1"; + version = "1.3.2"; src = fetchurl { - url = "https://registry.npmjs.org/grunt-cli/-/grunt-cli-1.3.1.tgz"; - sha512 = "UwBRu/QpAjDc53DRLEkyilFdL0zenpxu+fddTIlsF/KJqdNcHaQmvyu1W3cDesZ9rqqZdKK5A8+QDIyLUEWoZQ=="; + url = "https://registry.npmjs.org/grunt-cli/-/grunt-cli-1.3.2.tgz"; + sha512 = "8OHDiZZkcptxVXtMfDxJvmN7MVJNE8L/yIcPb4HB7TlyFD1kDvjHrb62uhySsU14wJx9ORMnTuhRMQ40lH/orQ=="; }; dependencies = [ sources."abbrev-1.1.1" @@ -2369,7 +2360,7 @@ in }) sources."urix-0.1.0" sources."use-3.1.1" - sources."v8flags-3.0.2" + sources."v8flags-3.1.1" sources."which-1.3.1" ]; buildInputs = globalBuildInputs; @@ -2420,17 +2411,13 @@ in sources."fast-deep-equal-1.1.0" sources."fast-json-stable-stringify-2.0.0" sources."forever-agent-0.6.1" - (sources."form-data-2.3.2" // { - dependencies = [ - sources."combined-stream-1.0.6" - ]; - }) + sources."form-data-2.3.3" sources."fs.realpath-1.0.0" sources."fstream-1.0.11" sources."gauge-2.7.4" sources."getpass-0.1.7" sources."glob-7.1.3" - sources."graceful-fs-4.1.11" + sources."graceful-fs-4.1.15" sources."har-schema-2.0.0" sources."har-validator-5.1.0" sources."has-unicode-2.0.1" @@ -2447,8 +2434,8 @@ in sources."json-schema-traverse-0.3.1" sources."json-stringify-safe-5.0.1" sources."jsprim-1.4.1" - sources."mime-db-1.36.0" - sources."mime-types-2.1.20" + sources."mime-db-1.37.0" + sources."mime-types-2.1.21" sources."minimatch-3.0.4" sources."minimist-0.0.8" sources."mkdirp-0.5.1" @@ -2475,7 +2462,7 @@ in sources."semver-5.3.0" sources."set-blocking-2.0.0" sources."signal-exit-3.0.2" - sources."sshpk-1.15.1" + sources."sshpk-1.15.2" sources."string-width-1.0.2" sources."string_decoder-1.1.1" sources."strip-ansi-3.0.1" @@ -2554,7 +2541,7 @@ in sources."isarray-1.0.0" sources."minimatch-3.0.4" sources."minimist-0.0.8" - sources."minipass-2.3.4" + sources."minipass-2.3.5" sources."minizlib-1.1.1" sources."mkdirp-0.5.1" sources."ms-2.0.0" @@ -2588,7 +2575,7 @@ in sources."string_decoder-1.1.1" sources."strip-ansi-3.0.1" sources."strip-json-comments-2.0.1" - sources."tar-4.4.6" + sources."tar-4.4.7" sources."util-deprecate-1.0.2" sources."wide-align-1.1.3" sources."wrappy-1.0.2" @@ -2606,10 +2593,10 @@ in pnpm = nodeEnv.buildNodePackage { name = "pnpm"; packageName = "pnpm"; - version = "2.16.3"; + version = "2.17.7"; src = fetchurl { - url = "https://registry.npmjs.org/pnpm/-/pnpm-2.16.3.tgz"; - sha512 = "W63qZOC9YGr+33JYvZjvhzvYL4YKT2gAywDJQrHvKTL6vmnnSh+GdM3ZdGIIZ6A57YB3NgvQaq/BJ2uYjwn3ZQ=="; + url = "https://registry.npmjs.org/pnpm/-/pnpm-2.17.7.tgz"; + sha512 = "FwZFpKSL4BNu1IGIScveHqZALpm6jSF7QR90CZXW4RfKaLpNYcIkkFC9iPBT4AdpPSv1UR/gYUWyQdTZBx2a5g=="; }; buildInputs = globalBuildInputs; meta = { diff --git a/pkgs/development/node-packages/node-packages-v8.json b/pkgs/development/node-packages/node-packages-v8.json index f297614ec38f3402f4b8ad00cc5e38502041c2c1..3a259b20222d4666fc9c123b1375a53059e156e9 100644 --- a/pkgs/development/node-packages/node-packages-v8.json +++ b/pkgs/development/node-packages/node-packages-v8.json @@ -2,6 +2,7 @@ "alloy" , "asar" , "azure-cli" +, "azure-functions-core-tools" , "bower" , "bower2nix" , "browserify" @@ -67,6 +68,7 @@ , "less-plugin-clean-css" , "live-server" , "livedown" +, { "lumo-build-deps": "../interpreters/clojurescript/lumo" } , "madoko" , "mathjax" , "meat" @@ -119,6 +121,7 @@ , "tiddlywiki" , "titanium" , "triton" +, "ttf2eot" , "typescript" , "typings" , "uglify-js" diff --git a/pkgs/development/node-packages/node-packages-v8.nix b/pkgs/development/node-packages/node-packages-v8.nix index 4a6c248e2952002513054386a8580350fb66aa95..34060c1d8c4d9ab6a57457f177f26031ba487787 100644 --- a/pkgs/development/node-packages/node-packages-v8.nix +++ b/pkgs/development/node-packages/node-packages-v8.nix @@ -22,13 +22,13 @@ let sha512 = "tGAp3ULNyoA8b5o9LsU2Lq6SwgVPUOKAqKywu2liEtTvrFSGPrObwanhYwArq3GPeOqp2bi+JknSJCIU3oQN1Q=="; }; }; - "@apollographql/graphql-playground-html-1.6.0" = { + "@apollographql/graphql-playground-html-1.6.4" = { name = "_at_apollographql_slash_graphql-playground-html"; packageName = "@apollographql/graphql-playground-html"; - version = "1.6.0"; + version = "1.6.4"; src = fetchurl { - url = "https://registry.npmjs.org/@apollographql/graphql-playground-html/-/graphql-playground-html-1.6.0.tgz"; - sha512 = "QAZIFrfVRkjvMkUHIQKZXZ3La0V5t12w5PWrhihYEabHwzIZV/txQd/kSYHgYPXC4s5OURxsXZop9f0BzI2QIQ=="; + url = "https://registry.npmjs.org/@apollographql/graphql-playground-html/-/graphql-playground-html-1.6.4.tgz"; + sha512 = "gwvaQO6/Hv4DEwhDLmmu2tzCU9oPjC5Xl9Kk8Yd0IxyKhYLlLalmkMMjsZLzU5H3fGaalLD96OYfxHL0ClVUDQ=="; }; }; "@babel/code-frame-7.0.0" = { @@ -40,6 +40,15 @@ let sha512 = "OfC2uemaknXr87bdLUkWog7nYuliM9Ij5HUcajsVcMCpQrcLmtxRbVFTIqmcSkSeYRBFBRxs2FiUqFJDLdiebA=="; }; }; + "@babel/core-7.1.5" = { + name = "_at_babel_slash_core"; + packageName = "@babel/core"; + version = "7.1.5"; + src = fetchurl { + url = "https://registry.npmjs.org/@babel/core/-/core-7.1.5.tgz"; + sha512 = "vOyH020C56tQvte++i+rX2yokZcRfbv/kKcw+/BCRw/cK6dvsr47aCzm8oC1XHwMSEWbqrZKzZRLzLnq6SFMsg=="; + }; + }; "@babel/generator-7.0.0-beta.38" = { name = "_at_babel_slash_generator"; packageName = "@babel/generator"; @@ -49,13 +58,193 @@ let sha512 = "aOHQPhsEyaB6p2n+AK981+onHoc+Ork9rcAQVSUJR33wUkGiWRpu6/C685knRyIZVsKeSdG5Q4xMiYeFUhuLzA=="; }; }; - "@babel/generator-7.1.3" = { + "@babel/generator-7.1.5" = { name = "_at_babel_slash_generator"; packageName = "@babel/generator"; - version = "7.1.3"; + version = "7.1.5"; + src = fetchurl { + url = "https://registry.npmjs.org/@babel/generator/-/generator-7.1.5.tgz"; + sha512 = "IO31r62xfMI+wBJVmgx0JR9ZOHty8HkoYpQAjRWUGG9vykBTlGHdArZ8zoFtpUu2gs17K7qTl/TtPpiSi6t+MA=="; + }; + }; + "@babel/helper-annotate-as-pure-7.0.0" = { + name = "_at_babel_slash_helper-annotate-as-pure"; + packageName = "@babel/helper-annotate-as-pure"; + version = "7.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/@babel/helper-annotate-as-pure/-/helper-annotate-as-pure-7.0.0.tgz"; + sha512 = "3UYcJUj9kvSLbLbUIfQTqzcy5VX7GRZ/CCDrnOaZorFFM01aXp1+GJwuFGV4NDDoAS+mOUyHcO6UD/RfqOks3Q=="; + }; + }; + "@babel/helper-builder-binary-assignment-operator-visitor-7.1.0" = { + name = "_at_babel_slash_helper-builder-binary-assignment-operator-visitor"; + packageName = "@babel/helper-builder-binary-assignment-operator-visitor"; + version = "7.1.0"; + src = fetchurl { + url = "https://registry.npmjs.org/@babel/helper-builder-binary-assignment-operator-visitor/-/helper-builder-binary-assignment-operator-visitor-7.1.0.tgz"; + sha512 = "qNSR4jrmJ8M1VMM9tibvyRAHXQs2PmaksQF7c1CGJNipfe3D8p+wgNwgso/P2A2r2mdgBWAXljNWR0QRZAMW8w=="; + }; + }; + "@babel/helper-call-delegate-7.1.0" = { + name = "_at_babel_slash_helper-call-delegate"; + packageName = "@babel/helper-call-delegate"; + version = "7.1.0"; + src = fetchurl { + url = "https://registry.npmjs.org/@babel/helper-call-delegate/-/helper-call-delegate-7.1.0.tgz"; + sha512 = "YEtYZrw3GUK6emQHKthltKNZwszBcHK58Ygcis+gVUrF4/FmTVr5CCqQNSfmvg2y+YDEANyYoaLz/SHsnusCwQ=="; + }; + }; + "@babel/helper-define-map-7.1.0" = { + name = "_at_babel_slash_helper-define-map"; + packageName = "@babel/helper-define-map"; + version = "7.1.0"; + src = fetchurl { + url = "https://registry.npmjs.org/@babel/helper-define-map/-/helper-define-map-7.1.0.tgz"; + sha512 = "yPPcW8dc3gZLN+U1mhYV91QU3n5uTbx7DUdf8NnPbjS0RMwBuHi9Xt2MUgppmNz7CJxTBWsGczTiEp1CSOTPRg=="; + }; + }; + "@babel/helper-explode-assignable-expression-7.1.0" = { + name = "_at_babel_slash_helper-explode-assignable-expression"; + packageName = "@babel/helper-explode-assignable-expression"; + version = "7.1.0"; + src = fetchurl { + url = "https://registry.npmjs.org/@babel/helper-explode-assignable-expression/-/helper-explode-assignable-expression-7.1.0.tgz"; + sha512 = "NRQpfHrJ1msCHtKjbzs9YcMmJZOg6mQMmGRB+hbamEdG5PNpaSm95275VD92DvJKuyl0s2sFiDmMZ+EnnvufqA=="; + }; + }; + "@babel/helper-function-name-7.1.0" = { + name = "_at_babel_slash_helper-function-name"; + packageName = "@babel/helper-function-name"; + version = "7.1.0"; + src = fetchurl { + url = "https://registry.npmjs.org/@babel/helper-function-name/-/helper-function-name-7.1.0.tgz"; + sha512 = "A95XEoCpb3TO+KZzJ4S/5uW5fNe26DjBGqf1o9ucyLyCmi1dXq/B3c8iaWTfBk3VvetUxl16e8tIrd5teOCfGw=="; + }; + }; + "@babel/helper-get-function-arity-7.0.0" = { + name = "_at_babel_slash_helper-get-function-arity"; + packageName = "@babel/helper-get-function-arity"; + version = "7.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/@babel/helper-get-function-arity/-/helper-get-function-arity-7.0.0.tgz"; + sha512 = "r2DbJeg4svYvt3HOS74U4eWKsUAMRH01Z1ds1zx8KNTPtpTL5JAsdFv8BNyOpVqdFhHkkRDIg5B4AsxmkjAlmQ=="; + }; + }; + "@babel/helper-hoist-variables-7.0.0" = { + name = "_at_babel_slash_helper-hoist-variables"; + packageName = "@babel/helper-hoist-variables"; + version = "7.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/@babel/helper-hoist-variables/-/helper-hoist-variables-7.0.0.tgz"; + sha512 = "Ggv5sldXUeSKsuzLkddtyhyHe2YantsxWKNi7A+7LeD12ExRDWTRk29JCXpaHPAbMaIPZSil7n+lq78WY2VY7w=="; + }; + }; + "@babel/helper-member-expression-to-functions-7.0.0" = { + name = "_at_babel_slash_helper-member-expression-to-functions"; + packageName = "@babel/helper-member-expression-to-functions"; + version = "7.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/@babel/helper-member-expression-to-functions/-/helper-member-expression-to-functions-7.0.0.tgz"; + sha512 = "avo+lm/QmZlv27Zsi0xEor2fKcqWG56D5ae9dzklpIaY7cQMK5N8VSpaNVPPagiqmy7LrEjK1IWdGMOqPu5csg=="; + }; + }; + "@babel/helper-module-imports-7.0.0" = { + name = "_at_babel_slash_helper-module-imports"; + packageName = "@babel/helper-module-imports"; + version = "7.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/@babel/helper-module-imports/-/helper-module-imports-7.0.0.tgz"; + sha512 = "aP/hlLq01DWNEiDg4Jn23i+CXxW/owM4WpDLFUbpjxe4NS3BhLVZQ5i7E0ZrxuQ/vwekIeciyamgB1UIYxxM6A=="; + }; + }; + "@babel/helper-module-transforms-7.1.0" = { + name = "_at_babel_slash_helper-module-transforms"; + packageName = "@babel/helper-module-transforms"; + version = "7.1.0"; + src = fetchurl { + url = "https://registry.npmjs.org/@babel/helper-module-transforms/-/helper-module-transforms-7.1.0.tgz"; + sha512 = "0JZRd2yhawo79Rcm4w0LwSMILFmFXjugG3yqf+P/UsKsRS1mJCmMwwlHDlMg7Avr9LrvSpp4ZSULO9r8jpCzcw=="; + }; + }; + "@babel/helper-optimise-call-expression-7.0.0" = { + name = "_at_babel_slash_helper-optimise-call-expression"; + packageName = "@babel/helper-optimise-call-expression"; + version = "7.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/@babel/helper-optimise-call-expression/-/helper-optimise-call-expression-7.0.0.tgz"; + sha512 = "u8nd9NQePYNQV8iPWu/pLLYBqZBa4ZaY1YWRFMuxrid94wKI1QNt67NEZ7GAe5Kc/0LLScbim05xZFWkAdrj9g=="; + }; + }; + "@babel/helper-plugin-utils-7.0.0" = { + name = "_at_babel_slash_helper-plugin-utils"; + packageName = "@babel/helper-plugin-utils"; + version = "7.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/@babel/helper-plugin-utils/-/helper-plugin-utils-7.0.0.tgz"; + sha512 = "CYAOUCARwExnEixLdB6sDm2dIJ/YgEAKDM1MOeMeZu9Ld/bDgVo8aiWrXwcY7OBh+1Ea2uUcVRcxKk0GJvW7QA=="; + }; + }; + "@babel/helper-regex-7.0.0" = { + name = "_at_babel_slash_helper-regex"; + packageName = "@babel/helper-regex"; + version = "7.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/@babel/helper-regex/-/helper-regex-7.0.0.tgz"; + sha512 = "TR0/N0NDCcUIUEbqV6dCO+LptmmSQFQ7q70lfcEB4URsjD0E1HzicrwUH+ap6BAQ2jhCX9Q4UqZy4wilujWlkg=="; + }; + }; + "@babel/helper-remap-async-to-generator-7.1.0" = { + name = "_at_babel_slash_helper-remap-async-to-generator"; + packageName = "@babel/helper-remap-async-to-generator"; + version = "7.1.0"; + src = fetchurl { + url = "https://registry.npmjs.org/@babel/helper-remap-async-to-generator/-/helper-remap-async-to-generator-7.1.0.tgz"; + sha512 = "3fOK0L+Fdlg8S5al8u/hWE6vhufGSn0bN09xm2LXMy//REAF8kDCrYoOBKYmA8m5Nom+sV9LyLCwrFynA8/slg=="; + }; + }; + "@babel/helper-replace-supers-7.1.0" = { + name = "_at_babel_slash_helper-replace-supers"; + packageName = "@babel/helper-replace-supers"; + version = "7.1.0"; + src = fetchurl { + url = "https://registry.npmjs.org/@babel/helper-replace-supers/-/helper-replace-supers-7.1.0.tgz"; + sha512 = "BvcDWYZRWVuDeXTYZWxekQNO5D4kO55aArwZOTFXw6rlLQA8ZaDicJR1sO47h+HrnCiDFiww0fSPV0d713KBGQ=="; + }; + }; + "@babel/helper-simple-access-7.1.0" = { + name = "_at_babel_slash_helper-simple-access"; + packageName = "@babel/helper-simple-access"; + version = "7.1.0"; + src = fetchurl { + url = "https://registry.npmjs.org/@babel/helper-simple-access/-/helper-simple-access-7.1.0.tgz"; + sha512 = "Vk+78hNjRbsiu49zAPALxTb+JUQCz1aolpd8osOF16BGnLtseD21nbHgLPGUwrXEurZgiCOUmvs3ExTu4F5x6w=="; + }; + }; + "@babel/helper-split-export-declaration-7.0.0" = { + name = "_at_babel_slash_helper-split-export-declaration"; + packageName = "@babel/helper-split-export-declaration"; + version = "7.0.0"; + src = fetchurl { + url = 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name = "_at_webassemblyjs_slash_wast-printer"; packageName = "@webassemblyjs/wast-printer"; - version = "1.7.8"; + version = "1.7.11"; src = fetchurl { - url = "https://registry.npmjs.org/@webassemblyjs/wast-printer/-/wast-printer-1.7.8.tgz"; - sha512 = "GllIthRtwTxRDAURRNXscu7Napzmdf1jt1gpiZiK/QN4fH0lSGs3OTmvdfsMNP7tqI4B3ZtfaaWRlNIQug6Xyg=="; + url = "https://registry.npmjs.org/@webassemblyjs/wast-printer/-/wast-printer-1.7.11.tgz"; + sha512 = "m5vkAsuJ32QpkdkDOUPGSltrg8Cuk3KBx4YrmAGQwCZPRdUHXxG4phIOuuycLemHFr74sWL9Wthqss4fzdzSwg=="; }; }; "@xtuc/ieee754-1.2.0" = { @@ -1494,7 +2142,7 @@ let packageName = "abstract-leveldown"; version = "0.12.4"; src = fetchurl { - url = "https://registry.npmjs.org/abstract-leveldown/-/abstract-leveldown-0.12.4.tgz"; + url = "http://registry.npmjs.org/abstract-leveldown/-/abstract-leveldown-0.12.4.tgz"; sha1 = "29e18e632e60e4e221d5810247852a63d7b2e410"; }; }; @@ -1503,10 +2151,19 @@ let packageName = "abstract-leveldown"; version = "4.0.3"; src = fetchurl { - url = "https://registry.npmjs.org/abstract-leveldown/-/abstract-leveldown-4.0.3.tgz"; + url = "http://registry.npmjs.org/abstract-leveldown/-/abstract-leveldown-4.0.3.tgz"; sha512 = "qsIHFQy0u17JqSY+3ZUT+ykqxYY17yOfvAsLkFkw8kSQqi05d1jyj0bCuSX6sjYlXuY9cKpgUt5EudQdP4aXyA=="; }; }; + "abstract-leveldown-5.0.0" = { + name = "abstract-leveldown"; + packageName = "abstract-leveldown"; + version = "5.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/abstract-leveldown/-/abstract-leveldown-5.0.0.tgz"; + sha512 = "5mU5P1gXtsMIXg65/rsYGsi93+MlogXZ9FA8JnwKurHQg64bfXwGYVdVdijNTVNOlAsuIiOwHdvFFD5JqCJQ7A=="; + }; + }; "abstract-random-access-1.1.2" = { name = "abstract-random-access"; packageName = "abstract-random-access"; @@ -1552,6 +2209,15 @@ let sha512 = "3OOR92FTc2p5/EcOzPcXp+Cbo+3C15nV9RXHlOUBCBpHhcB+0frbSNR9ehED/o7sTcyGVtqGJpguToEdlXhD0w=="; }; }; + "ace.improved-0.2.1" = { + name = "ace.improved"; + packageName = "ace.improved"; + version = "0.2.1"; + src = fetchurl { + url = "https://registry.npmjs.org/ace.improved/-/ace.improved-0.2.1.tgz"; + sha1 = "4d74628fc431b09cdcaa1fb2b23d1ec83c5d2f32"; + }; + }; "acorn-1.2.2" = { name = "acorn"; packageName = "acorn"; @@ -1597,13 +2263,13 @@ let sha512 = "T/zvzYRfbVojPWahDsE5evJdHb3oJoQfFbsrKM7w5Zcs++Tr257tia3BmMP8XYVjp1S9RZXQMh7gao96BlqZOw=="; }; }; - "acorn-6.0.2" = { + "acorn-6.0.4" = { name = "acorn"; packageName = "acorn"; - version = "6.0.2"; + version = "6.0.4"; src = fetchurl { - url = "https://registry.npmjs.org/acorn/-/acorn-6.0.2.tgz"; - sha512 = "GXmKIvbrN3TV7aVqAzVFaMW8F8wzVX7voEBRO3bDA64+EX37YSayggRJP5Xig6HYHBkWKpFg9W5gg6orklubhg=="; + url = "https://registry.npmjs.org/acorn/-/acorn-6.0.4.tgz"; + sha512 = "VY4i5EKSKkofY2I+6QLTbTTN/UvEQPCo6eiwzzSaSWfpaDhOmStMCMod6wmuPciNq+XS0faCglFu2lHZpdHUtg=="; }; }; "acorn-dynamic-import-3.0.0" = { @@ -1615,6 +2281,15 @@ let sha512 = "zVWV8Z8lislJoOKKqdNMOB+s6+XV5WERty8MnKBeFgwA+19XJjJHs2RP5dzM57FftIs+jQnRToLiWazKr6sSWg=="; }; }; + "acorn-dynamic-import-4.0.0" = { + name = "acorn-dynamic-import"; + packageName = "acorn-dynamic-import"; + version = "4.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/acorn-dynamic-import/-/acorn-dynamic-import-4.0.0.tgz"; + sha512 = "d3OEjQV4ROpoflsnUA8HozoIR504TFxNivYEUi6uwz0IYhBkTDXGuWlNdMtybRt3nqVx/L6XqMt0FxkXuWKZhw=="; + }; + }; "acorn-globals-1.0.9" = { name = "acorn-globals"; packageName = "acorn-globals"; @@ -1651,13 +2326,31 @@ let sha512 = "JY+iV6r+cO21KtntVvFkD+iqjtdpRUpGqKWgfkCdZq1R+kbreEl8EcdcJR4SmiIgsIQT33s6QzheQ9a275Q8xw=="; }; }; - "acorn-node-1.6.0" = { + "acorn-jsx-5.0.0" = { + name = "acorn-jsx"; + packageName = "acorn-jsx"; + version = "5.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/acorn-jsx/-/acorn-jsx-5.0.0.tgz"; + sha512 = "XkB50fn0MURDyww9+UYL3c1yLbOBz0ZFvrdYlGB8l+Ije1oSC75qAqrzSPjYQbdnQUzhlUGNKuesryAv0gxZOg=="; + }; + }; + "acorn-loose-6.0.0" = { + name = "acorn-loose"; + packageName = "acorn-loose"; + version = "6.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/acorn-loose/-/acorn-loose-6.0.0.tgz"; + sha512 = "gJff4bSdy882CwS6toeHixdBn9+IP8ojffjCW9hXnb2Ly7uVyAMaH2pLehtwS10wj2FIQ9Iw564MTDSsaQW9ng=="; + }; + }; + "acorn-node-1.6.2" = { name = "acorn-node"; packageName = "acorn-node"; - version = "1.6.0"; + version = "1.6.2"; src = fetchurl { - url = "https://registry.npmjs.org/acorn-node/-/acorn-node-1.6.0.tgz"; - sha512 = "ZsysjEh+Y3i14f7YXCAKJy99RXbd56wHKYBzN4FlFtICIZyFpYwK6OwNJhcz8A/FMtxoUZkJofH1v9KIfNgWmw=="; + url = "https://registry.npmjs.org/acorn-node/-/acorn-node-1.6.2.tgz"; + sha512 = "rIhNEZuNI8ibQcL7ANm/mGyPukIaZsRNX9psFNQURyJW0nu6k8wjSDld20z6v2mDBWqX13pIEnk9gGZJHIlEXg=="; }; }; "acorn-walk-6.1.0" = { @@ -1714,13 +2407,13 @@ let sha1 = "f291be701a2efc567a63fc7aa6afcded31430be1"; }; }; - "addons-linter-1.3.1" = { + "addons-linter-1.3.8" = { name = "addons-linter"; packageName = "addons-linter"; - version = "1.3.1"; + version = "1.3.8"; src = fetchurl { - url = "https://registry.npmjs.org/addons-linter/-/addons-linter-1.3.1.tgz"; - sha512 = "Oaj8q8hXWwGhrzlMTM7LUxj5ZUxi8k8/pg0V/NlA3usgClngl7jXW4GRlobdoOao8KEnW95y/WNNMeoTbxYe4w=="; + url = "https://registry.npmjs.org/addons-linter/-/addons-linter-1.3.8.tgz"; + sha512 = "NFon8Q++k8R6t1lunNPoVPWxVUzC8ED5Cu8VB66HdsaVarLHNhIdpDSqClplefC5Mypx/EEgZhkMZAuaxScyUg=="; }; }; "addr-to-ip-port-1.5.1" = { @@ -1804,13 +2497,13 @@ let sha512 = "JVwXMr9nHYTUXsBFKUqhJwvlcYU/blreOEUkhNR2eXZIvwd+c+o5V4MgDPKWnMS/56awN3TRzIP+KoPn+roQtg=="; }; }; - "agentkeepalive-3.5.1" = { + "agentkeepalive-3.5.2" = { name = "agentkeepalive"; packageName = "agentkeepalive"; - version = "3.5.1"; + version = "3.5.2"; src = fetchurl { - url = "https://registry.npmjs.org/agentkeepalive/-/agentkeepalive-3.5.1.tgz"; - sha512 = "Cte/sTY9/XcygXjJ0q58v//SnEQ7ViWExKyJpLJlLqomDbQyMLh6Is4KuWJ/wmxzhiwkGRple7Gqv1zf6Syz5w=="; + url = "https://registry.npmjs.org/agentkeepalive/-/agentkeepalive-3.5.2.tgz"; + sha512 = "e0L/HNe6qkQ7H19kTlRRqUibEAwDK5AFk6y3PtMsuut2VAH6+Q4xZml1tNDJD7kSAyqmbG/K08K5WEJYtUrSlQ=="; }; }; "aggregate-error-1.0.0" = { @@ -1876,15 +2569,6 @@ let sha1 = "73b5eeca3fab653e3d3f9422b341ad42205dc965"; }; }; - "ajv-6.5.2" = { - name = "ajv"; - packageName = "ajv"; - version = "6.5.2"; - src = fetchurl { - url = "https://registry.npmjs.org/ajv/-/ajv-6.5.2.tgz"; - sha512 = "hOs7GfvI6tUI1LfZddH82ky6mOMyTuY0mk7kE2pWpmhhUSkumzaTO5vbVwij39MdwPQWCV4Zv57Eo06NtL/GVA=="; - }; - }; "ajv-6.5.3" = { name = "ajv"; packageName = "ajv"; @@ -1903,6 +2587,15 @@ let sha512 = "4Wyjt8+t6YszqaXnLDfMmG/8AlO5Zbcsy3ATHncCzjW/NoPzAId8AK6749Ybjmdt+kUY1gP60fCu46oDxPv/mg=="; }; }; + "ajv-6.5.5" = { + name = "ajv"; + packageName = "ajv"; + version = "6.5.5"; + src = fetchurl { + url = "https://registry.npmjs.org/ajv/-/ajv-6.5.5.tgz"; + sha512 = "7q7gtRQDJSyuEHjuVgHoUa2VuemFiCMrfQc9Tc08XTAc4Zj/5U1buQJ0HU6i7fKjXU09SVgSmxa4sLvuvS8Iyg=="; + }; + }; "ajv-keywords-1.5.1" = { name = "ajv-keywords"; packageName = "ajv-keywords"; @@ -1935,7 +2628,7 @@ let packageName = "aliasify"; version = "2.1.0"; src = fetchurl { - url = "https://registry.npmjs.org/aliasify/-/aliasify-2.1.0.tgz"; + url = "http://registry.npmjs.org/aliasify/-/aliasify-2.1.0.tgz"; sha1 = "7c30825b9450b9e6185ba27533eaf6e2067d4b42"; }; }; @@ -1948,13 +2641,13 @@ let sha1 = "0cd90a561093f35d0a99256c22b7069433fad117"; }; }; - "aligned-block-file-1.1.3" = { + "aligned-block-file-1.1.4" = { name = "aligned-block-file"; packageName = "aligned-block-file"; - version = "1.1.3"; + version = "1.1.4"; src = fetchurl { - url = "https://registry.npmjs.org/aligned-block-file/-/aligned-block-file-1.1.3.tgz"; - sha512 = "ai/S+nZ9XMjC0ReZfq94OLGCICVBJyhNiKWmF1J+/GVZZaXtYV805plMi9obaWjfNl/QljB+VOsT+wQ7R858xA=="; + url = "https://registry.npmjs.org/aligned-block-file/-/aligned-block-file-1.1.4.tgz"; + sha512 = "KE27h781ueGONLqSBY2ik6LJRr9vo0L/i3GGhtQgJfCk0MO2QNSgrXZVCk2t7UeZKYTxcTfl+yBgcZWqBiAGPQ=="; }; }; "almond-0.3.3" = { @@ -2043,7 +2736,7 @@ let packageName = "ansi-escapes"; version = "1.4.0"; src = fetchurl { - url = "https://registry.npmjs.org/ansi-escapes/-/ansi-escapes-1.4.0.tgz"; + url = "http://registry.npmjs.org/ansi-escapes/-/ansi-escapes-1.4.0.tgz"; sha1 = "d3a8a83b319aa67793662b13e761c7911422306e"; }; }; @@ -2052,7 +2745,7 @@ let packageName = "ansi-escapes"; version = "3.1.0"; src = fetchurl { - url = "https://registry.npmjs.org/ansi-escapes/-/ansi-escapes-3.1.0.tgz"; + url = "http://registry.npmjs.org/ansi-escapes/-/ansi-escapes-3.1.0.tgz"; sha512 = "UgAb8H9D41AQnu/PbWlCofQVcnV4Gs2bBJi9eZPxfU/hgglFh3SMDMENRIqdr7H6XFnXdoknctFByVsCOotTVw=="; }; }; @@ -2245,40 +2938,40 @@ let sha1 = "ee49736b639b4f108b6e9e626c6da99306b41692"; }; }; - "apollo-cache-1.1.17" = { + "apollo-cache-1.1.20" = { name = "apollo-cache"; packageName = "apollo-cache"; - version = "1.1.17"; + version = "1.1.20"; src = fetchurl { - url = "https://registry.npmjs.org/apollo-cache/-/apollo-cache-1.1.17.tgz"; - sha512 = "7sp24n2HZO4vXgTaKNomLyIfGxG4gDdDkBB0jkRzRi7HhnKmfwhiF/RCiKNbgLdrPX151INdls0KwIVliD0dHQ=="; + url = "https://registry.npmjs.org/apollo-cache/-/apollo-cache-1.1.20.tgz"; + sha512 = "+Du0/4kUSuf5PjPx0+pvgMGV12ezbHA8/hubYuqRQoy/4AWb4faa61CgJNI6cKz2mhDd9m94VTNKTX11NntwkQ=="; }; }; - "apollo-cache-control-0.2.5" = { + "apollo-cache-control-0.3.0" = { name = "apollo-cache-control"; packageName = "apollo-cache-control"; - version = "0.2.5"; + version = "0.3.0"; src = fetchurl { - url = "https://registry.npmjs.org/apollo-cache-control/-/apollo-cache-control-0.2.5.tgz"; - sha512 = "xEDrUvo3U2mQKSzA8NzQmgeqK4ytwFnTGl2YKGKPfG0+r8fZdswKp6CDBue29KLO8KkSuqW/hntveWrAdK51FQ=="; + url = "https://registry.npmjs.org/apollo-cache-control/-/apollo-cache-control-0.3.0.tgz"; + sha512 = "XtkinmravL9/IEAPXzJod9fKx4iesS0TNBV/619xwurv8eopZkbAiKVZ3WB4rbjoGQpBgEs0bekWIAhYGWLyOw=="; }; }; - "apollo-cache-inmemory-1.3.5" = { + "apollo-cache-inmemory-1.3.9" = { name = "apollo-cache-inmemory"; packageName = "apollo-cache-inmemory"; - version = "1.3.5"; + version = "1.3.9"; src = fetchurl { - url = "https://registry.npmjs.org/apollo-cache-inmemory/-/apollo-cache-inmemory-1.3.5.tgz"; - sha512 = "CD4Dl9vcCp7N05KUqR3rNDj2WJ1DQNNfeyBUIo5T6XTiUhfBQp5x+CL7S+ezy5mPp+xo4TnwFzLFh/vy2LdDog=="; + url = "https://registry.npmjs.org/apollo-cache-inmemory/-/apollo-cache-inmemory-1.3.9.tgz"; + sha512 = "Q2k84p/OqIuMUyeWGc6XbVXXZu0erYOO+wTx9p+CnQUspnNvf7zmvFNgFnmudXzfuG1m1CSzePk6fC/M1ehOqQ=="; }; }; - "apollo-client-2.4.2" = { + "apollo-client-2.4.5" = { name = "apollo-client"; packageName = "apollo-client"; - version = "2.4.2"; + version = "2.4.5"; src = fetchurl { - url = "https://registry.npmjs.org/apollo-client/-/apollo-client-2.4.2.tgz"; - sha512 = "g1z23umaVSoKLj9xNl0aAnk2KBF4JeBi7MeKFc9CGTixH7TkqeQUQtxcjrC7j2h4KmDbuhOAHOFUGf8YshN+ag=="; + url = "https://registry.npmjs.org/apollo-client/-/apollo-client-2.4.5.tgz"; + sha512 = "nUm06EGa4TP/IY68OzmC3lTD32TqkjLOQdb69uYo+lHl8NnwebtrAw3qFtsQtTEz6ueBp/Z/HasNZng4jwafVQ=="; }; }; "apollo-codegen-0.19.1" = { @@ -2290,31 +2983,31 @@ let sha512 = "jlxz/b5iinRWfh48hXdmMtrjTPn/rDok0Z3b7icvkiaD6I30w4sq9B+JDkFbLnkldzsFLV2BZtBDa/dkZhx8Ng=="; }; }; - "apollo-datasource-0.1.3" = { + "apollo-datasource-0.2.0" = { name = "apollo-datasource"; packageName = "apollo-datasource"; - version = "0.1.3"; + version = "0.2.0"; src = fetchurl { - url = "https://registry.npmjs.org/apollo-datasource/-/apollo-datasource-0.1.3.tgz"; - sha512 = "yEGEe5Cjzqqu5ml1VV3O8+C+thzdknZri9Ny0P3daTGNO+45J3vBOMcmaANeeI2+OOeWxdqUNa5aPOx/35kniw=="; + url = "https://registry.npmjs.org/apollo-datasource/-/apollo-datasource-0.2.0.tgz"; + sha512 = "WJM9Ix3uogIfAG7mjL1NZQM9+45rcikn4mPWhE1Iuyw2+Y857J3uKJqQgF5h9Fg64SlCJh9u5WL3N7N5mg1fVw=="; }; }; - "apollo-engine-reporting-0.0.6" = { + "apollo-engine-reporting-0.1.0" = { name = "apollo-engine-reporting"; packageName = "apollo-engine-reporting"; - version = "0.0.6"; + version = "0.1.0"; src = fetchurl { - url = "https://registry.npmjs.org/apollo-engine-reporting/-/apollo-engine-reporting-0.0.6.tgz"; - sha512 = "JmfNJ9v3QEJQ8ZhLfCKEDiww53n5kj5HarP85p8LreoYNojbvcWN8Qm6RgvSG5N/ZJrAYHeTRQbSxm1vWwGubw=="; + url = "https://registry.npmjs.org/apollo-engine-reporting/-/apollo-engine-reporting-0.1.0.tgz"; + sha512 = "OjG9MmNWRS3ZMSDc44Z6QMFQ66VDzs/E4H1yZELZ77BVrLsDx4i8Fft95byywACUpLvXhrCRtOdSZIwRPDq+cw=="; }; }; - "apollo-engine-reporting-protobuf-0.0.1" = { + "apollo-engine-reporting-protobuf-0.1.0" = { name = "apollo-engine-reporting-protobuf"; packageName = "apollo-engine-reporting-protobuf"; - version = "0.0.1"; + version = "0.1.0"; src = fetchurl { - url = "https://registry.npmjs.org/apollo-engine-reporting-protobuf/-/apollo-engine-reporting-protobuf-0.0.1.tgz"; - sha512 = "AySoDgog2p1Nph44FyyqaU4AfRZOXx8XZxRsVHvYY4dHlrMmDDhhjfF3Jswa7Wr8X/ivvx3xA0jimRn6rsG8Ew=="; + url = "https://registry.npmjs.org/apollo-engine-reporting-protobuf/-/apollo-engine-reporting-protobuf-0.1.0.tgz"; + sha512 = "GReJtAYTmpwg0drb9VgFtqObYYTCHkJhlHEYCeXY8bJV4fOgXsAZ7CIXR9nPKO0mBaoHIHaGYvXGcyCLrZ36VA=="; }; }; "apollo-link-1.2.3" = { @@ -2380,76 +3073,94 @@ let sha512 = "CtKwLE61bCJTW5jrucOMm5PubeAlCl/9i45pg4GKKlAbl0zR4i2dww8TJkYoIY6iCyj4qjKW/uqGD6v5/aVwhg=="; }; }; - "apollo-server-caching-0.1.2" = { + "apollo-server-caching-0.2.0" = { name = "apollo-server-caching"; packageName = "apollo-server-caching"; - version = "0.1.2"; + version = "0.2.0"; src = fetchurl { - url = "https://registry.npmjs.org/apollo-server-caching/-/apollo-server-caching-0.1.2.tgz"; - sha512 = "jBRnsTgXN0m8yVpumoelaUq9mXR7YpJ3EE+y/alI7zgXY+0qFDqksRApU8dEfg3q6qUnO7rFxRhdG5eyc0+1ig=="; + url = "https://registry.npmjs.org/apollo-server-caching/-/apollo-server-caching-0.2.0.tgz"; + sha512 = "/v7xWEcyyahs3hwX4baH/GekuHz3LRt9NoIYwg869G1eeqjuwY6NsowRIujZ100anJQwm9v5A9/sLtHBFvbgYg=="; }; }; - "apollo-server-core-2.1.0" = { + "apollo-server-core-2.2.0" = { name = "apollo-server-core"; packageName = "apollo-server-core"; - version = "2.1.0"; + version = "2.2.0"; src = fetchurl { - url = "https://registry.npmjs.org/apollo-server-core/-/apollo-server-core-2.1.0.tgz"; - sha512 = "D1Tw0o3NzCQ2KGM8EWh9AHELHmn/SE361dtlqJxkbelxXqAkCIGIFywF30h+0ezhMbgbO7eqBBJfvRilF/oJHA=="; + url = "https://registry.npmjs.org/apollo-server-core/-/apollo-server-core-2.2.0.tgz"; + sha512 = "Pd9YpC/xSzpVOr6KM5bDHQdcI8jjKu3hb8x7eyevh/Q7eyrF+ClmfPZvY5EnG4ETIJsTS0+fU1dnoGMmyxCBKw=="; }; }; - "apollo-server-env-2.0.3" = { + "apollo-server-env-2.2.0" = { name = "apollo-server-env"; packageName = "apollo-server-env"; - version = "2.0.3"; + version = "2.2.0"; src = fetchurl { - url = "https://registry.npmjs.org/apollo-server-env/-/apollo-server-env-2.0.3.tgz"; - sha512 = "uIfKFH8n8xKO0eLb9Fa79+s2DdMuVethgznvW6SrOYq5VzgkIIobqKEuZPKa5wObw9CkCyju/+Sr7b7WWMFxUQ=="; + url = "https://registry.npmjs.org/apollo-server-env/-/apollo-server-env-2.2.0.tgz"; + sha512 = "wjJiI5nQWPBpNmpiLP389Ezpstp71szS6DHAeTgYLb/ulCw3CTuuA+0/E1bsThVWiQaDeHZE0sE3yI8q2zrYiA=="; }; }; - "apollo-server-errors-2.0.2" = { + "apollo-server-errors-2.2.0" = { name = "apollo-server-errors"; packageName = "apollo-server-errors"; - version = "2.0.2"; + version = "2.2.0"; src = fetchurl { - url = "https://registry.npmjs.org/apollo-server-errors/-/apollo-server-errors-2.0.2.tgz"; - sha512 = "zyWDqAVDCkj9espVsoUpZr9PwDznM8UW6fBfhV+i1br//s2AQb07N6ektZ9pRIEvkhykDZW+8tQbDwAO0vUROg=="; + url = "https://registry.npmjs.org/apollo-server-errors/-/apollo-server-errors-2.2.0.tgz"; + sha512 = "gV9EZG2tovFtT1cLuCTavnJu2DaKxnXPRNGSTo+SDI6IAk6cdzyW0Gje5N2+3LybI0Wq5KAbW6VLei31S4MWmg=="; }; }; - "apollo-server-express-2.1.0" = { + "apollo-server-express-2.2.0" = { name = "apollo-server-express"; packageName = "apollo-server-express"; - version = "2.1.0"; + version = "2.2.0"; src = fetchurl { - url = "https://registry.npmjs.org/apollo-server-express/-/apollo-server-express-2.1.0.tgz"; - sha512 = "jLFIz1VLduMA/rme4OAy3IPeoaMEZOPoQXpio8AhfjIqCijRPPfoWJ2QMqz56C/g3vas7rZtgcVOrHpjBKudjw=="; + url = "https://registry.npmjs.org/apollo-server-express/-/apollo-server-express-2.2.0.tgz"; + sha512 = "E6WpImvCHKR9MHs64gTHhMrehk6/1NRE2+bblsHZg7ot8Iy6hVmzsCIzSmlPYh5uozpcyeRdC1pV0nwERtQKog=="; }; }; - "apollo-tracing-0.2.5" = { + "apollo-server-plugin-base-0.1.0" = { + name = "apollo-server-plugin-base"; + packageName = "apollo-server-plugin-base"; + version = "0.1.0"; + src = fetchurl { + url = "https://registry.npmjs.org/apollo-server-plugin-base/-/apollo-server-plugin-base-0.1.0.tgz"; + sha512 = "ptaVBjR+Q1swdzsh84tY5Qb0yyTMO/IOBsBJzCdxuAKs+PAVFw7ZMQoe5bT0DJjKJXHjtfMiTF77mRLLBq2dEw=="; + }; + }; + "apollo-tracing-0.3.0" = { name = "apollo-tracing"; packageName = "apollo-tracing"; - version = "0.2.5"; + version = "0.3.0"; src = fetchurl { - url = "https://registry.npmjs.org/apollo-tracing/-/apollo-tracing-0.2.5.tgz"; - sha512 = "DZO7pfL5LATHeJdVFoTZ/N3HwA+IMf1YnIt5K+uMQW+/MrRgYOtTszUv5tYX2cUIqHYHcbdDaBQUuIXwSpaV2Q=="; + url = "https://registry.npmjs.org/apollo-tracing/-/apollo-tracing-0.3.0.tgz"; + sha512 = "fkSpvzldDo1jBFap0d5lJYghEiH55eRVQzrC6vGvwr7rZNK5Moznwn9sBqy+4QsOaIp+wYc6pz/a+hwG4pasig=="; }; }; - "apollo-upload-client-8.1.0" = { + "apollo-upload-client-9.1.0" = { name = "apollo-upload-client"; packageName = "apollo-upload-client"; - version = "8.1.0"; + version = "9.1.0"; src = fetchurl { - url = "https://registry.npmjs.org/apollo-upload-client/-/apollo-upload-client-8.1.0.tgz"; - sha512 = "JEgStzhnwybj1ifE2nViLEl7NTM5+zS++fKbDL95PIpodg2AdYeeN7eEa7RXpYD14iC3FVcsfqgGMREv2+cSxw=="; + url = "https://registry.npmjs.org/apollo-upload-client/-/apollo-upload-client-9.1.0.tgz"; + sha512 = "ZN5gsbBjImEZTWWTUHpCEGDasnoBGbaODpznQ5EawyNHceuFYSNJbbft+ZZ841vZAcj9XZdKUKoaLBlMZ/r7nw=="; }; }; - "apollo-utilities-1.0.21" = { + "apollo-utilities-1.0.25" = { name = "apollo-utilities"; packageName = "apollo-utilities"; - version = "1.0.21"; + version = "1.0.25"; + src = fetchurl { + url = "https://registry.npmjs.org/apollo-utilities/-/apollo-utilities-1.0.25.tgz"; + sha512 = "AXvqkhni3Ir1ffm4SA1QzXn8k8I5BBl4PVKEyak734i4jFdp+xgfUyi2VCqF64TJlFTA/B73TRDUvO2D+tKtZg=="; + }; + }; + "app-builder-5.2.0" = { + name = "app-builder"; + packageName = "app-builder"; + version = "5.2.0"; src = fetchurl { - url = "https://registry.npmjs.org/apollo-utilities/-/apollo-utilities-1.0.21.tgz"; - sha512 = "ZcxELlEl+sDCYBgEMdNXJAsZtRVm8wk4HIA58bMsqYfd1DSAJQEtZ93F0GZgYNAGy3QyaoBeZtbb0/01++G8JQ=="; + url = "https://registry.npmjs.org/app-builder/-/app-builder-5.2.0.tgz"; + sha512 = "RRj/vu8WhmMM71G9BxMLRvcwpr1QUJZ9NXURGGo1v3fPiauzkQfNi31kM7irRNqR87NV+lJ/qI62iTzcAc+V0Q=="; }; }; "append-0.1.1" = { @@ -2479,15 +3190,6 @@ let sha1 = "d8220cf466081525efea50614f3de6514dfa58f1"; }; }; - "append-field-0.1.0" = { - name = "append-field"; - packageName = "append-field"; - version = "0.1.0"; - src = fetchurl { - url = "https://registry.npmjs.org/append-field/-/append-field-0.1.0.tgz"; - sha1 = "6ddc58fa083c7bc545d3c5995b2830cc2366d44a"; - }; - }; "append-field-1.0.0" = { name = "append-field"; packageName = "append-field"; @@ -2551,6 +3253,15 @@ let sha512 = "BLM56aPo9vLLFVa8+/+pJLnrZ7QGGTVHWsCwieAWT9o9K8UeGaQbzZbGoabWLOo2ksBCztoXdqBZBplqLDDCSg=="; }; }; + "archive-type-4.0.0" = { + name = "archive-type"; + packageName = "archive-type"; + version = "4.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/archive-type/-/archive-type-4.0.0.tgz"; + sha1 = "f92e72233056dfc6969472749c267bdb046b1d70"; + }; + }; "archiver-2.1.1" = { name = "archiver"; packageName = "archiver"; @@ -3271,15 +3982,6 @@ let sha1 = "d16901d10ccec59516c197b9ccd8930689b813b4"; }; }; - "atomic-file-0.0.1" = { - name = "atomic-file"; - packageName = "atomic-file"; - version = "0.0.1"; - src = fetchurl { - url = "https://registry.npmjs.org/atomic-file/-/atomic-file-0.0.1.tgz"; - sha1 = "6c36658f6c4ece33fba3877731e7c25fc82999bb"; - }; - }; "atomic-file-1.1.5" = { name = "atomic-file"; packageName = "atomic-file"; @@ -3316,13 +4018,13 @@ let sha1 = "00f35b2d27ac91b1f0d3ef2084c98cf1d1f0adc3"; }; }; - "aws-sdk-2.334.0" = { + "aws-sdk-2.353.0" = { name = "aws-sdk"; packageName = "aws-sdk"; - version = "2.334.0"; + version = "2.353.0"; src = fetchurl { - url = "https://registry.npmjs.org/aws-sdk/-/aws-sdk-2.334.0.tgz"; - sha512 = "JiqtB2t/PklHCfo86HA6g6a8CXu5SDNa8XiaQ0rYyVBlzDR41p/s/yNlva3D1/QGiBTojl2fd9ZxBUxKa2Q9cg=="; + url = "https://registry.npmjs.org/aws-sdk/-/aws-sdk-2.353.0.tgz"; + sha512 = "c5MwJhfcHwA2lC1Wq9csQvP9gz8dVGpZ64s5j9f/sWY6eZiDCQ6OWjxj+VJfpnCmfxyC/pdZO7JDGwems7dqIQ=="; }; }; "aws-sign-0.2.1" = { @@ -3379,31 +4081,31 @@ let sha1 = "56b558ba43b9cb5657662251dabe3cb34c16c56f"; }; }; - "azure-arm-batch-3.1.2" = { + "azure-arm-batch-3.2.0" = { name = "azure-arm-batch"; packageName = "azure-arm-batch"; - version = "3.1.2"; + version = "3.2.0"; src = fetchurl { - url = "https://registry.npmjs.org/azure-arm-batch/-/azure-arm-batch-3.1.2.tgz"; - sha512 = "4jAqSLNrQvdjq6/BmKSkvIUZj7gUpJnf/cOgxs/gbHNluOhIm19RRrD7yzeriGcx1fzIDZGQ7iPmF6kI9CW7xQ=="; + url = "https://registry.npmjs.org/azure-arm-batch/-/azure-arm-batch-3.2.0.tgz"; + sha512 = "DDfgAiRruGAiL8Yot5nufG3O8GLA0r5lf1CGYhuF8pEzQ+vYfhLpgJzme7LPh3ASPb8UBSVYHm1IK4W4StvVnw=="; }; }; - "azure-arm-cdn-4.0.2" = { + "azure-arm-cdn-4.1.0" = { name = "azure-arm-cdn"; packageName = "azure-arm-cdn"; - version = "4.0.2"; + version = "4.1.0"; src = fetchurl { - url = "https://registry.npmjs.org/azure-arm-cdn/-/azure-arm-cdn-4.0.2.tgz"; - sha512 = "qDxDfmBGpV4oDodfWo1BQmPs8ibOL55To+cu9OlhBGHbbzLIZclsHZucOElCtQHSKWuQMjhWRc+RF8eUSRqrxA=="; + url = "https://registry.npmjs.org/azure-arm-cdn/-/azure-arm-cdn-4.1.0.tgz"; + sha512 = "5xD2CkCx5ONn1vaGa4USAzv3LtCs0kmZCkdSNj98eQlQJLJQ7RPpIsNAXHGuHX4yN+EKHdaA2/hC/ynuQujNEQ=="; }; }; - "azure-arm-commerce-2.0.0" = { + "azure-arm-commerce-2.1.0" = { name = "azure-arm-commerce"; packageName = "azure-arm-commerce"; - version = "2.0.0"; + version = "2.1.0"; src = fetchurl { - url = "https://registry.npmjs.org/azure-arm-commerce/-/azure-arm-commerce-2.0.0.tgz"; - sha512 = "scKBmo3nZXbzXtox+SoEYf8Ij+c2y1r47Ga0MVxm1kUTs1UT8KaAiAlC269KKDNYpuXXuV7+CKUs52VCiM06JQ=="; + url = "https://registry.npmjs.org/azure-arm-commerce/-/azure-arm-commerce-2.1.0.tgz"; + sha512 = "zhZ9b1Comp1Owa8/Pn7ORTL0l+uX9elz5A5yOoL/XdYXC8S6bN2QaiRLPmue9ZB55qGE1Tn7Cf+KRlpskL17hQ=="; }; }; "azure-arm-compute-3.0.0-preview" = { @@ -3438,7 +4140,7 @@ let packageName = "azure-arm-devtestlabs"; version = "2.1.1"; src = fetchurl { - url = "https://registry.npmjs.org/azure-arm-devtestlabs/-/azure-arm-devtestlabs-2.1.1.tgz"; + url = "http://registry.npmjs.org/azure-arm-devtestlabs/-/azure-arm-devtestlabs-2.1.1.tgz"; sha512 = "S5dCYTMrqL+BJc699fIQtXwLFuv5m8jTDqPdXTFpn/CSkyBcOyJwuZH2zPExQjGNZTyjIR6GWi8oeg/IpYLBWw=="; }; }; @@ -3501,7 +4203,7 @@ let packageName = "azure-arm-powerbiembedded"; version = "0.1.1"; src = fetchurl { - url = "https://registry.npmjs.org/azure-arm-powerbiembedded/-/azure-arm-powerbiembedded-0.1.1.tgz"; + url = "http://registry.npmjs.org/azure-arm-powerbiembedded/-/azure-arm-powerbiembedded-0.1.1.tgz"; sha1 = "7103c94e06b3ddf628293f60e02fd0ba8f9c3ca9"; }; }; @@ -3510,7 +4212,7 @@ let packageName = "azure-arm-rediscache"; version = "0.2.3"; src = fetchurl { - url = "https://registry.npmjs.org/azure-arm-rediscache/-/azure-arm-rediscache-0.2.3.tgz"; + url = "http://registry.npmjs.org/azure-arm-rediscache/-/azure-arm-rediscache-0.2.3.tgz"; sha1 = "b6898abe8b4c3e1b2ec5be82689ef212bc2b1a06"; }; }; @@ -3523,13 +4225,13 @@ let sha1 = "aa9a49fb9081a210f2f4cc6596ca4653b68306e6"; }; }; - "azure-arm-resource-7.0.0" = { + "azure-arm-resource-7.1.0" = { name = "azure-arm-resource"; packageName = "azure-arm-resource"; - version = "7.0.0"; + version = "7.1.0"; src = fetchurl { - url = "https://registry.npmjs.org/azure-arm-resource/-/azure-arm-resource-7.0.0.tgz"; - sha512 = "LW1OmW49d5xQo/KDBK2BNfoFVOlP8Gq9yKqP2kz0e6RURl5UXhIfN65Y4GeJramuyGIOXeGPV+NrXrzl1k4d4g=="; + url = "https://registry.npmjs.org/azure-arm-resource/-/azure-arm-resource-7.1.0.tgz"; + sha512 = "EzLJJYn1Qzwjc/ukikdj9N89J4Y9MphVL2gTxt092jqAZND3ecLS4QTVPzpwxQkLZF/Jo+ZPPQozxEDWuCRAQQ=="; }; }; "azure-arm-servermanagement-1.1.0" = { @@ -3559,13 +4261,13 @@ let sha1 = "b46cfcf7f1690e4739864dcdb5c8de322e82ec50"; }; }; - "azure-arm-website-5.3.0" = { + "azure-arm-website-5.6.0" = { name = "azure-arm-website"; packageName = "azure-arm-website"; - version = "5.3.0"; + version = "5.6.0"; src = fetchurl { - url = "https://registry.npmjs.org/azure-arm-website/-/azure-arm-website-5.3.0.tgz"; - sha512 = "R2x44/SIGCuTBkRvnZuEjagIMAqcec38HnCl1AEO9NwpEh0HiD9eIa1XEM7j6wa7vHqyQdL7hNwYnCS0QRDkNQ=="; + url = "https://registry.npmjs.org/azure-arm-website/-/azure-arm-website-5.6.0.tgz"; + sha512 = "rG7SIGe5KFHmUW7V3Fia4mb7YSsnXWHYdXfCzpHXPBBxeY2gmpeyHXolrlpSFgvarsi5ucC+0B3iPiFxZZ53LA=="; }; }; "azure-asm-compute-0.18.0" = { @@ -3636,7 +4338,7 @@ let packageName = "azure-asm-subscription"; version = "0.10.1"; src = fetchurl { - url = "https://registry.npmjs.org/azure-asm-subscription/-/azure-asm-subscription-0.10.1.tgz"; + url = "http://registry.npmjs.org/azure-asm-subscription/-/azure-asm-subscription-0.10.1.tgz"; sha1 = "917a5e87a04b69c0f5c29339fe910bb5e5e7a04c"; }; }; @@ -3712,22 +4414,22 @@ let sha512 = "6HNA8VuC5qYvQMjcQt2/zlB7oyAJ7n6KGIYGstS6KS9Orux0peqxlrGPDeQRa4jDNq6ili83KiGc7RhWcgsE4Q=="; }; }; - "azure-servicefabric-2.0.0" = { + "azure-servicefabric-2.1.0" = { name = "azure-servicefabric"; packageName = "azure-servicefabric"; - version = "2.0.0"; + version = "2.1.0"; src = fetchurl { - url = "https://registry.npmjs.org/azure-servicefabric/-/azure-servicefabric-2.0.0.tgz"; - sha512 = "SkMg4vVrQ7Vd7/h8h3qZzURQysV4KJqUIy4pjs/XRjVbCduSePlJ3EOgAl9ed739RWkT906xIAU3tu2Pf5RKFQ=="; + url = "https://registry.npmjs.org/azure-servicefabric/-/azure-servicefabric-2.1.0.tgz"; + sha512 = "A/9b+iHbOy1Ix7OFMmzhn7+TyYxgoe0nOXI/cQJTvP6neoP5J64F4P5r/LmxS1I6TDmSe+3jGlqdql9PawChNw=="; }; }; - "azure-storage-2.10.1" = { + "azure-storage-2.10.2" = { name = "azure-storage"; packageName = "azure-storage"; - version = "2.10.1"; + version = "2.10.2"; src = fetchurl { - url = "https://registry.npmjs.org/azure-storage/-/azure-storage-2.10.1.tgz"; - sha512 = "rnFo1uMIPtilusRCpK91tfY3P4Q7qRsDNwriXdp+OeTIGkGt0cTxL4mhqYfNPYPK+WBQmBdGWhOk+iROM05dcw=="; + url = "https://registry.npmjs.org/azure-storage/-/azure-storage-2.10.2.tgz"; + sha512 = "pOyGPya9+NDpAfm5YcFfklo57HfjDbYLXxs4lomPwvRxmb0Di/A+a+RkUmEFzaQ8S13CqxK40bRRB0sjj2ZQxA=="; }; }; "babel-code-frame-6.26.0" = { @@ -3748,6 +4450,24 @@ let sha512 = "6jyFLuDmeidKmUEb3NM+/yawG0M2bDZ9Z1qbZP59cyHLz8kYGKYwpJP0UwUKKUiTRNvxfLesJnTedqczP7cTDA=="; }; }; + "babel-core-7.0.0-bridge.0" = { + name = "babel-core"; + packageName = "babel-core"; + version = "7.0.0-bridge.0"; + src = fetchurl { + url = "https://registry.npmjs.org/babel-core/-/babel-core-7.0.0-bridge.0.tgz"; + sha512 = "poPX9mZH/5CSanm50Q+1toVci6pv5KSRv/5TWCwtzQS5XEwn40BcCrgIeMFWP9CKKIniKXNxoIOnOq4VVlGXhg=="; + }; + }; + "babel-eslint-10.0.1" = { + name = "babel-eslint"; + packageName = "babel-eslint"; + version = "10.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/babel-eslint/-/babel-eslint-10.0.1.tgz"; + sha512 = "z7OT1iNV+TjOwHNLLyJk+HN+YVWX+CLE6fPD2SymJZOZQBs+QIexFjhm4keGTm8MW9xr4EC9Q0PbaLB24V5GoQ=="; + }; + }; "babel-generator-6.26.1" = { name = "babel-generator"; packageName = "babel-generator"; @@ -3766,6 +4486,69 @@ let sha1 = "39ff8313b75c8b65dceff1f31d383e0ff2a408a0"; }; }; + "babel-helper-evaluate-path-0.5.0" = { + name = "babel-helper-evaluate-path"; + packageName = "babel-helper-evaluate-path"; + version = "0.5.0"; + src = fetchurl { + url = "https://registry.npmjs.org/babel-helper-evaluate-path/-/babel-helper-evaluate-path-0.5.0.tgz"; + sha512 = "mUh0UhS607bGh5wUMAQfOpt2JX2ThXMtppHRdRU1kL7ZLRWIXxoV2UIV1r2cAeeNeU1M5SB5/RSUgUxrK8yOkA=="; + }; + }; + "babel-helper-flip-expressions-0.4.3" = { + name = "babel-helper-flip-expressions"; + packageName = "babel-helper-flip-expressions"; + version = "0.4.3"; + src = fetchurl { + url = "https://registry.npmjs.org/babel-helper-flip-expressions/-/babel-helper-flip-expressions-0.4.3.tgz"; + sha1 = "3696736a128ac18bc25254b5f40a22ceb3c1d3fd"; + }; + }; + "babel-helper-is-nodes-equiv-0.0.1" = { + name = "babel-helper-is-nodes-equiv"; + packageName = "babel-helper-is-nodes-equiv"; + version = "0.0.1"; + src = fetchurl { + url = "http://registry.npmjs.org/babel-helper-is-nodes-equiv/-/babel-helper-is-nodes-equiv-0.0.1.tgz"; + sha1 = "34e9b300b1479ddd98ec77ea0bbe9342dfe39684"; + }; + }; + "babel-helper-is-void-0-0.4.3" = { + name = "babel-helper-is-void-0"; + packageName = 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fetchurl { + url = "https://registry.npmjs.org/babel-loader/-/babel-loader-8.0.4.tgz"; + sha512 = "fhBhNkUToJcW9nV46v8w87AJOwAJDz84c1CL57n3Stj73FANM/b9TbCUK4YhdOwEyZ+OxhYpdeZDNzSI29Firw=="; + }; + }; "babel-messages-6.23.0" = { name = "babel-messages"; packageName = "babel-messages"; @@ -3784,6 +4585,132 @@ let sha1 = "f3cdf4703858035b2a2951c6ec5edf6c62f2630e"; }; }; + "babel-plugin-istanbul-4.1.6" = { + name = "babel-plugin-istanbul"; + packageName = "babel-plugin-istanbul"; + version = "4.1.6"; + src = fetchurl { + url = "http://registry.npmjs.org/babel-plugin-istanbul/-/babel-plugin-istanbul-4.1.6.tgz"; + sha512 = "PWP9FQ1AhZhS01T/4qLSKoHGY/xvkZdVBGlKM/HuxxS3+sC66HhTNR7+MpbO/so/cz/wY94MeSWJuP1hXIPfwQ=="; + }; + }; + "babel-plugin-jest-hoist-23.2.0" = { + name = "babel-plugin-jest-hoist"; + packageName = "babel-plugin-jest-hoist"; + version = "23.2.0"; + src = fetchurl { + url = "https://registry.npmjs.org/babel-plugin-jest-hoist/-/babel-plugin-jest-hoist-23.2.0.tgz"; + sha1 = "e61fae05a1ca8801aadee57a6d66b8cefaf44167"; + }; + }; + "babel-plugin-minify-builtins-0.5.0" = { + name = "babel-plugin-minify-builtins"; + packageName = "babel-plugin-minify-builtins"; + version = "0.5.0"; + src = fetchurl { + url = "https://registry.npmjs.org/babel-plugin-minify-builtins/-/babel-plugin-minify-builtins-0.5.0.tgz"; + sha512 = "wpqbN7Ov5hsNwGdzuzvFcjgRlzbIeVv1gMIlICbPj0xkexnfoIDe7q+AZHMkQmAE/F9R5jkrB6TLfTegImlXag=="; + }; + }; + "babel-plugin-minify-constant-folding-0.5.0" = { + name = "babel-plugin-minify-constant-folding"; + packageName = "babel-plugin-minify-constant-folding"; + version = "0.5.0"; + src = fetchurl { + url = "https://registry.npmjs.org/babel-plugin-minify-constant-folding/-/babel-plugin-minify-constant-folding-0.5.0.tgz"; + sha512 = "Vj97CTn/lE9hR1D+jKUeHfNy+m1baNiJ1wJvoGyOBUx7F7kJqDZxr9nCHjO/Ad+irbR3HzR6jABpSSA29QsrXQ=="; + }; + }; + "babel-plugin-minify-dead-code-elimination-0.5.0" = { + name = "babel-plugin-minify-dead-code-elimination"; + packageName = "babel-plugin-minify-dead-code-elimination"; + version = "0.5.0"; + src = fetchurl { + url = "https://registry.npmjs.org/babel-plugin-minify-dead-code-elimination/-/babel-plugin-minify-dead-code-elimination-0.5.0.tgz"; + sha512 = "XQteBGXlgEoAKc/BhO6oafUdT4LBa7ARi55mxoyhLHNuA+RlzRmeMAfc31pb/UqU01wBzRc36YqHQzopnkd/6Q=="; + }; + }; + "babel-plugin-minify-flip-comparisons-0.4.3" = { + name = "babel-plugin-minify-flip-comparisons"; + packageName = "babel-plugin-minify-flip-comparisons"; + version = "0.4.3"; + src = fetchurl { + url = "https://registry.npmjs.org/babel-plugin-minify-flip-comparisons/-/babel-plugin-minify-flip-comparisons-0.4.3.tgz"; + sha1 = "00ca870cb8f13b45c038b3c1ebc0f227293c965a"; + }; + }; + "babel-plugin-minify-guarded-expressions-0.4.3" = { + name = "babel-plugin-minify-guarded-expressions"; + packageName = "babel-plugin-minify-guarded-expressions"; + version = "0.4.3"; + src = fetchurl { + url = "https://registry.npmjs.org/babel-plugin-minify-guarded-expressions/-/babel-plugin-minify-guarded-expressions-0.4.3.tgz"; + sha1 = "cc709b4453fd21b1f302877444c89f88427ce397"; + }; + }; + "babel-plugin-minify-infinity-0.4.3" = { + name = "babel-plugin-minify-infinity"; + packageName = "babel-plugin-minify-infinity"; + version = "0.4.3"; + src = fetchurl { + url = "https://registry.npmjs.org/babel-plugin-minify-infinity/-/babel-plugin-minify-infinity-0.4.3.tgz"; + sha1 = "dfb876a1b08a06576384ef3f92e653ba607b39ca"; + }; + }; + "babel-plugin-minify-mangle-names-0.5.0" = { + name = "babel-plugin-minify-mangle-names"; + packageName = "babel-plugin-minify-mangle-names"; + version = "0.5.0"; + src = fetchurl { + url = "https://registry.npmjs.org/babel-plugin-minify-mangle-names/-/babel-plugin-minify-mangle-names-0.5.0.tgz"; + sha512 = "3jdNv6hCAw6fsX1p2wBGPfWuK69sfOjfd3zjUXkbq8McbohWy23tpXfy5RnToYWggvqzuMOwlId1PhyHOfgnGw=="; + }; + }; + "babel-plugin-minify-numeric-literals-0.4.3" = { + name = "babel-plugin-minify-numeric-literals"; + packageName = "babel-plugin-minify-numeric-literals"; + version = "0.4.3"; + src = fetchurl { + url = "https://registry.npmjs.org/babel-plugin-minify-numeric-literals/-/babel-plugin-minify-numeric-literals-0.4.3.tgz"; + sha1 = "8e4fd561c79f7801286ff60e8c5fd9deee93c0bc"; + }; + }; + "babel-plugin-minify-replace-0.5.0" = { + name = "babel-plugin-minify-replace"; + packageName = "babel-plugin-minify-replace"; + version = "0.5.0"; + src = fetchurl { + url = "https://registry.npmjs.org/babel-plugin-minify-replace/-/babel-plugin-minify-replace-0.5.0.tgz"; + sha512 = "aXZiaqWDNUbyNNNpWs/8NyST+oU7QTpK7J9zFEFSA0eOmtUNMU3fczlTTTlnCxHmq/jYNFEmkkSG3DDBtW3Y4Q=="; + }; + }; + "babel-plugin-minify-simplify-0.5.0" = { + name = "babel-plugin-minify-simplify"; + packageName = "babel-plugin-minify-simplify"; + version = "0.5.0"; + src = fetchurl { + url = "https://registry.npmjs.org/babel-plugin-minify-simplify/-/babel-plugin-minify-simplify-0.5.0.tgz"; + sha512 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"997bb1f1ab967f682d2b0876fe358d60e765c56d"; }; }; + "babel-plugin-transform-flow-strip-types-6.22.0" = { + name = "babel-plugin-transform-flow-strip-types"; + packageName = "babel-plugin-transform-flow-strip-types"; + version = "6.22.0"; + src = fetchurl { + url = "https://registry.npmjs.org/babel-plugin-transform-flow-strip-types/-/babel-plugin-transform-flow-strip-types-6.22.0.tgz"; + sha1 = "84cb672935d43714fdc32bce84568d87441cf7cf"; + }; + }; + "babel-plugin-transform-inline-consecutive-adds-0.4.3" = { + name = "babel-plugin-transform-inline-consecutive-adds"; + packageName = "babel-plugin-transform-inline-consecutive-adds"; + version = "0.4.3"; + src = fetchurl { + url = "https://registry.npmjs.org/babel-plugin-transform-inline-consecutive-adds/-/babel-plugin-transform-inline-consecutive-adds-0.4.3.tgz"; + sha1 = "323d47a3ea63a83a7ac3c811ae8e6941faf2b0d1"; + }; + }; + "babel-plugin-transform-member-expression-literals-6.9.4" = { + name = "babel-plugin-transform-member-expression-literals"; + packageName = "babel-plugin-transform-member-expression-literals"; + version = "6.9.4"; + src = fetchurl { + url = "https://registry.npmjs.org/babel-plugin-transform-member-expression-literals/-/babel-plugin-transform-member-expression-literals-6.9.4.tgz"; + sha1 = "37039c9a0c3313a39495faac2ff3a6b5b9d038bf"; + }; + }; + "babel-plugin-transform-merge-sibling-variables-6.9.4" = { + name = "babel-plugin-transform-merge-sibling-variables"; + packageName = "babel-plugin-transform-merge-sibling-variables"; + version = "6.9.4"; + src = fetchurl { + url = "https://registry.npmjs.org/babel-plugin-transform-merge-sibling-variables/-/babel-plugin-transform-merge-sibling-variables-6.9.4.tgz"; + sha1 = "85b422fc3377b449c9d1cde44087203532401dae"; + }; + }; + "babel-plugin-transform-minify-booleans-6.9.4" = { + name = "babel-plugin-transform-minify-booleans"; + packageName = "babel-plugin-transform-minify-booleans"; + version = "6.9.4"; + src = fetchurl { + url = "https://registry.npmjs.org/babel-plugin-transform-minify-booleans/-/babel-plugin-transform-minify-booleans-6.9.4.tgz"; + sha1 = "acbb3e56a3555dd23928e4b582d285162dd2b198"; + }; + }; "babel-plugin-transform-object-rest-spread-6.26.0" = { name = "babel-plugin-transform-object-rest-spread"; packageName = "babel-plugin-transform-object-rest-spread"; @@ -3820,6 +4792,15 @@ let sha1 = "0f36692d50fef6b7e2d4b3ac1478137a963b7b06"; }; }; + "babel-plugin-transform-property-literals-6.9.4" = { + name = "babel-plugin-transform-property-literals"; + packageName = "babel-plugin-transform-property-literals"; + version = "6.9.4"; + src = fetchurl { + url = "https://registry.npmjs.org/babel-plugin-transform-property-literals/-/babel-plugin-transform-property-literals-6.9.4.tgz"; + sha1 = "98c1d21e255736573f93ece54459f6ce24985d39"; + }; + }; "babel-plugin-transform-react-jsx-6.24.1" = { name = "babel-plugin-transform-react-jsx"; packageName = "babel-plugin-transform-react-jsx"; @@ -3829,6 +4810,60 @@ let sha1 = "840a028e7df460dfc3a2d29f0c0d91f6376e66a3"; }; }; + "babel-plugin-transform-regexp-constructors-0.4.3" = { + name = "babel-plugin-transform-regexp-constructors"; + packageName = "babel-plugin-transform-regexp-constructors"; + version = "0.4.3"; + src = fetchurl { + url = "https://registry.npmjs.org/babel-plugin-transform-regexp-constructors/-/babel-plugin-transform-regexp-constructors-0.4.3.tgz"; + sha1 = "58b7775b63afcf33328fae9a5f88fbd4fb0b4965"; + }; + }; + "babel-plugin-transform-remove-console-6.9.4" = { + name = "babel-plugin-transform-remove-console"; + packageName = "babel-plugin-transform-remove-console"; + version = "6.9.4"; + src = fetchurl { + url = "https://registry.npmjs.org/babel-plugin-transform-remove-console/-/babel-plugin-transform-remove-console-6.9.4.tgz"; + sha1 = "b980360c067384e24b357a588d807d3c83527780"; + }; + }; + "babel-plugin-transform-remove-debugger-6.9.4" = { + name = "babel-plugin-transform-remove-debugger"; + packageName = "babel-plugin-transform-remove-debugger"; + version = "6.9.4"; + src = fetchurl { + url = "https://registry.npmjs.org/babel-plugin-transform-remove-debugger/-/babel-plugin-transform-remove-debugger-6.9.4.tgz"; + sha1 = "42b727631c97978e1eb2d199a7aec84a18339ef2"; + }; + }; + "babel-plugin-transform-remove-undefined-0.5.0" = { + name = "babel-plugin-transform-remove-undefined"; + packageName = "babel-plugin-transform-remove-undefined"; + version = "0.5.0"; + src = fetchurl { + url = "https://registry.npmjs.org/babel-plugin-transform-remove-undefined/-/babel-plugin-transform-remove-undefined-0.5.0.tgz"; + sha512 = "+M7fJYFaEE/M9CXa0/IRkDbiV3wRELzA1kKQFCJ4ifhrzLKn/9VCCgj9OFmYWwBd8IB48YdgPkHYtbYq+4vtHQ=="; + }; + }; + "babel-plugin-transform-simplify-comparison-operators-6.9.4" = { + name = "babel-plugin-transform-simplify-comparison-operators"; + packageName = "babel-plugin-transform-simplify-comparison-operators"; + version = "6.9.4"; + src = fetchurl { + url = "https://registry.npmjs.org/babel-plugin-transform-simplify-comparison-operators/-/babel-plugin-transform-simplify-comparison-operators-6.9.4.tgz"; + sha1 = "f62afe096cab0e1f68a2d753fdf283888471ceb9"; + }; + }; + "babel-plugin-transform-undefined-to-void-6.9.4" = { + name = "babel-plugin-transform-undefined-to-void"; + packageName = "babel-plugin-transform-undefined-to-void"; + version = "6.9.4"; + src = fetchurl { + url = "https://registry.npmjs.org/babel-plugin-transform-undefined-to-void/-/babel-plugin-transform-undefined-to-void-6.9.4.tgz"; + sha1 = "be241ca81404030678b748717322b89d0c8fe280"; + }; + }; "babel-polyfill-6.16.0" = { name = "babel-polyfill"; packageName = "babel-polyfill"; @@ -3847,6 +4882,24 @@ let sha1 = "379937abc67d7895970adc621f284cd966cf2153"; }; }; + "babel-preset-jest-23.2.0" = { + name = "babel-preset-jest"; + packageName = "babel-preset-jest"; + version = "23.2.0"; + src = fetchurl { + url = "https://registry.npmjs.org/babel-preset-jest/-/babel-preset-jest-23.2.0.tgz"; + sha1 = "8ec7a03a138f001a1a8fb1e8113652bf1a55da46"; + }; + }; + "babel-preset-minify-0.5.0" = { + name = "babel-preset-minify"; + packageName = "babel-preset-minify"; + version = "0.5.0"; + src = fetchurl { + url = "https://registry.npmjs.org/babel-preset-minify/-/babel-preset-minify-0.5.0.tgz"; + sha512 = "xj1s9Mon+RFubH569vrGCayA9Fm2GMsCgDRm1Jb8SgctOB7KFcrVc2o8K3YHUyMz+SWP8aea75BoS8YfsXXuiA=="; + }; + }; "babel-register-6.26.0" = { name = "babel-register"; packageName = "babel-register"; @@ -4108,15 +5161,6 @@ let sha1 = "45221ee429f7ee1e5035be3f51533f1cdfd29884"; }; }; - "basic-auth-2.0.0" = { - name = "basic-auth"; - packageName = "basic-auth"; - version = "2.0.0"; - src = fetchurl { - url = "https://registry.npmjs.org/basic-auth/-/basic-auth-2.0.0.tgz"; - sha1 = "015db3f353e02e56377755f962742e8981e7bbba"; - }; - }; "basic-auth-2.0.1" = { name = "basic-auth"; packageName = "basic-auth"; @@ -4293,7 +5337,7 @@ let packageName = "bin-version"; version = "2.0.0"; src = fetchurl { - url = "https://registry.npmjs.org/bin-version/-/bin-version-2.0.0.tgz"; + url = "http://registry.npmjs.org/bin-version/-/bin-version-2.0.0.tgz"; sha1 = "2cc95d83b522bdef2e99978e76aeb5491c8114ff"; }; }; @@ -4302,7 +5346,7 @@ let packageName = "bin-version-check"; version = "3.0.0"; src = fetchurl { - url = "https://registry.npmjs.org/bin-version-check/-/bin-version-check-3.0.0.tgz"; + url = "http://registry.npmjs.org/bin-version-check/-/bin-version-check-3.0.0.tgz"; sha1 = "e24ebfa6b63cb0387c5fc174f86e5cc812ca7cc9"; }; }; @@ -4527,7 +5571,7 @@ let packageName = "blob"; version = "0.0.2"; src = fetchurl { - url = "https://registry.npmjs.org/blob/-/blob-0.0.2.tgz"; + url = "http://registry.npmjs.org/blob/-/blob-0.0.2.tgz"; sha1 = "b89562bd6994af95ba1e812155536333aa23cf24"; }; }; @@ -4536,10 +5580,19 @@ let packageName = "blob"; version = "0.0.4"; src = fetchurl { - url = "https://registry.npmjs.org/blob/-/blob-0.0.4.tgz"; + url = "http://registry.npmjs.org/blob/-/blob-0.0.4.tgz"; sha1 = "bcf13052ca54463f30f9fc7e95b9a47630a94921"; }; }; + "blob-0.0.5" = { + name = "blob"; + packageName = "blob"; + version = "0.0.5"; + src = fetchurl { + url = "https://registry.npmjs.org/blob/-/blob-0.0.5.tgz"; + sha512 = "gaqbzQPqOoamawKg0LGVd7SzLgXS+JH61oWprSLH+P+abTczqJbhTR8CmJ2u9/bUYNmHTGJx/UEmn6doAvvuig=="; + }; + }; "blob-to-buffer-1.2.8" = { name = "blob-to-buffer"; packageName = "blob-to-buffer"; @@ -4585,13 +5638,22 @@ let sha1 = "61a26904d43d7f6b19dff7ed917dbc92452ad6d3"; }; }; - "bluebird-3.5.2" = { + "bluebird-3.4.7" = { name = "bluebird"; packageName = "bluebird"; - version = "3.5.2"; + version = "3.4.7"; src = fetchurl { - url = "https://registry.npmjs.org/bluebird/-/bluebird-3.5.2.tgz"; - sha512 = "dhHTWMI7kMx5whMQntl7Vr9C6BvV10lFXDAasnqnrMYhXVCzzk6IO9Fo2L75jXHT07WrOngL1WDXOp+yYS91Yg=="; + url = "http://registry.npmjs.org/bluebird/-/bluebird-3.4.7.tgz"; + sha1 = "f72d760be09b7f76d08ed8fae98b289a8d05fab3"; + }; + }; + "bluebird-3.5.3" = { + name = "bluebird"; + packageName = "bluebird"; + version = "3.5.3"; + src = fetchurl { + url = "https://registry.npmjs.org/bluebird/-/bluebird-3.5.3.tgz"; + sha512 = "/qKPUQlaW1OyR51WeCPBvRnAlnZFUJkCSG5HzGnuIqhgyJtF+T94lFnn33eiazjRm2LAHVy2guNnaq48X9SJuw=="; }; }; "blueimp-md5-2.10.0" = { @@ -4644,7 +5706,7 @@ let packageName = "body-parser"; version = "1.12.4"; src = fetchurl { - url = "https://registry.npmjs.org/body-parser/-/body-parser-1.12.4.tgz"; + url = "http://registry.npmjs.org/body-parser/-/body-parser-1.12.4.tgz"; sha1 = "090700c4ba28862a8520ef378395fdee5f61c229"; }; }; @@ -4653,19 +5715,10 @@ let packageName = "body-parser"; version = "1.13.3"; src = fetchurl { - url = "https://registry.npmjs.org/body-parser/-/body-parser-1.13.3.tgz"; + url = "http://registry.npmjs.org/body-parser/-/body-parser-1.13.3.tgz"; sha1 = "c08cf330c3358e151016a05746f13f029c97fa97"; }; }; - "body-parser-1.18.2" = { - name = "body-parser"; - packageName = "body-parser"; - version = "1.18.2"; - src = fetchurl { - url = "https://registry.npmjs.org/body-parser/-/body-parser-1.18.2.tgz"; - sha1 = "87678a19d84b47d859b83199bd59bce222b10454"; - }; - }; "body-parser-1.18.3" = { name = "body-parser"; packageName = "body-parser"; @@ -4698,7 +5751,7 @@ let packageName = "boom"; version = "0.3.8"; src = fetchurl { - url = "https://registry.npmjs.org/boom/-/boom-0.3.8.tgz"; + url = "http://registry.npmjs.org/boom/-/boom-0.3.8.tgz"; sha1 = "c8cdb041435912741628c044ecc732d1d17c09ea"; }; }; @@ -4707,7 +5760,7 @@ let packageName = "boom"; version = "2.10.1"; src = fetchurl { - url = "https://registry.npmjs.org/boom/-/boom-2.10.1.tgz"; + url = "http://registry.npmjs.org/boom/-/boom-2.10.1.tgz"; sha1 = "39c8918ceff5799f83f9492a848f625add0c766f"; }; }; @@ -5013,7 +6066,7 @@ let packageName = "browserify-transform-tools"; version = "1.7.0"; src = fetchurl { - url = "https://registry.npmjs.org/browserify-transform-tools/-/browserify-transform-tools-1.7.0.tgz"; + url = "http://registry.npmjs.org/browserify-transform-tools/-/browserify-transform-tools-1.7.0.tgz"; sha1 = "83e277221f63259bed2e7eb2a283a970a501f4c4"; }; }; @@ -5035,6 +6088,15 @@ let sha512 = "Z942RysHXmJrhqk88FmKBVq/v5tqmSkDz7p54G/MGyjMnCFFnC79XWNbg+Vta8W6Wb2qtSZTSxIGkJrRpCFEiA=="; }; }; + "browserslist-4.3.4" = { + name = "browserslist"; + packageName = "browserslist"; + version = "4.3.4"; + src = fetchurl { + url = "https://registry.npmjs.org/browserslist/-/browserslist-4.3.4.tgz"; + sha512 = "u5iz+ijIMUlmV8blX82VGFrB9ecnUg5qEt55CMZ/YJEhha+d8qpBfOFuutJ6F/VKRXjZoD33b6uvarpPxcl3RA=="; + }; + }; "bson-0.1.8" = { name = "bson"; packageName = "bson"; @@ -5188,6 +6250,24 @@ let sha512 = "4/rOEg86jivtPTeOUUT61jJO1Ya1TrR/OkqCSZDyq84WJh3LuuiphBYJN+fm5xufIk4XAFcEwte/8WzC8If/1g=="; }; }; + "buffer-indexof-polyfill-1.0.1" = { + name = "buffer-indexof-polyfill"; + packageName = "buffer-indexof-polyfill"; + version = "1.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/buffer-indexof-polyfill/-/buffer-indexof-polyfill-1.0.1.tgz"; + sha1 = "a9fb806ce8145d5428510ce72f278bb363a638bf"; + }; + }; + "buffer-queue-1.0.0" = { + name = "buffer-queue"; + packageName = "buffer-queue"; + version = "1.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/buffer-queue/-/buffer-queue-1.0.0.tgz"; + sha1 = "3d253fe2f0ab70e851d728712e8cd6f914a8c002"; + }; + }; "buffer-xor-1.0.3" = { name = "buffer-xor"; packageName = "buffer-xor"; @@ -5278,6 +6358,15 @@ let sha1 = "270f076c5a72c02f5b65a47df94c5fe3a278892f"; }; }; + "builtin-modules-2.0.0" = { + name = "builtin-modules"; + packageName = "builtin-modules"; + version = "2.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/builtin-modules/-/builtin-modules-2.0.0.tgz"; + sha512 = "3U5kUA5VPsRUA3nofm/BXX7GVHKfxz0hOBAPxXrIvHzlDRkQVqEn6yi8QJegxl4LzOHLdvb7XF5dVawa/VVYBg=="; + }; + }; "builtin-status-codes-3.0.0" = { name = "builtin-status-codes"; packageName = "builtin-status-codes"; @@ -5350,13 +6439,13 @@ let sha1 = "741c5216468eadc457b03410118ad77de8c1ddb1"; }; }; - "byte-size-4.0.3" = { + "byte-size-4.0.4" = { name = "byte-size"; packageName = "byte-size"; - version = "4.0.3"; + version = "4.0.4"; src = fetchurl { - url = "https://registry.npmjs.org/byte-size/-/byte-size-4.0.3.tgz"; - sha512 = "JGC3EV2bCzJH/ENSh3afyJrH4vwxbHTuO5ljLoI5+2iJOcEpMgP8T782jH9b5qGxf2mSUIp1lfGnfKNrRHpvVg=="; + url = "https://registry.npmjs.org/byte-size/-/byte-size-4.0.4.tgz"; + sha512 = "82RPeneC6nqCdSwCX2hZUz3JPOvN5at/nTEw/CMf05Smu3Hrpo9Psb7LjN+k+XndNArG1EY8L4+BM3aTM4BCvw=="; }; }; "bytebuffer-3.5.5" = { @@ -5454,17 +6543,17 @@ let packageName = "cacache"; version = "10.0.4"; src = fetchurl { - url = "https://registry.npmjs.org/cacache/-/cacache-10.0.4.tgz"; + url = "http://registry.npmjs.org/cacache/-/cacache-10.0.4.tgz"; sha512 = "Dph0MzuH+rTQzGPNT9fAnrPmMmjKfST6trxJeK7NQuHRaVw24VzPRWTmg9MpcwOVQZO0E1FBICUlFeNaKPIfHA=="; }; }; - "cacache-11.2.0" = { + "cacache-11.3.1" = { name = "cacache"; packageName = "cacache"; - version = "11.2.0"; + version = "11.3.1"; src = fetchurl { - url = "https://registry.npmjs.org/cacache/-/cacache-11.2.0.tgz"; - sha512 = "IFWl6lfK6wSeYCHUXh+N1lY72UDrpyrYQJNIVQf48paDuWbv5RbAtJYf/4gUQFObTCHZwdZ5sI8Iw7nqwP6nlQ=="; + url = "https://registry.npmjs.org/cacache/-/cacache-11.3.1.tgz"; + sha512 = "2PEw4cRRDu+iQvBTTuttQifacYjLPhET+SYO/gEFMy8uhi+jlJREDAjSF5FWSdV/Aw5h18caHA7vMTw2c+wDzA=="; }; }; "cache-base-1.0.1" = { @@ -5485,13 +6574,22 @@ let sha1 = "0d808801b6342ad33c91df9d0b44dc09b91e5c3d"; }; }; - "cached-path-relative-1.0.1" = { + "cacheable-request-5.1.0" = { + name = "cacheable-request"; + packageName = "cacheable-request"; + version = "5.1.0"; + src = fetchurl { + url = "https://registry.npmjs.org/cacheable-request/-/cacheable-request-5.1.0.tgz"; + sha512 = "UCdjX4N/QjymZGpKY7hW4VJsxsVJM+drIiCxPa9aTvFQN5sL2+kJCYyeys8f2W0dJ0sU6Et54Ovl0sAmCpHHsA=="; + }; + }; + "cached-path-relative-1.0.2" = { name = "cached-path-relative"; packageName = "cached-path-relative"; - version = "1.0.1"; + version = "1.0.2"; src = fetchurl { - url = "https://registry.npmjs.org/cached-path-relative/-/cached-path-relative-1.0.1.tgz"; - sha1 = "d09c4b52800aa4c078e2dd81a869aac90d2e54e7"; + url = "https://registry.npmjs.org/cached-path-relative/-/cached-path-relative-1.0.2.tgz"; + sha512 = "5r2GqsoEb4qMTTN9J+WzXfjov+hjxT+j3u5K+kIVNIwAd99DLCJE9pBIMP1qVeybV6JiijL385Oz0DcYxfbOIg=="; }; }; "call-me-maybe-1.0.1" = { @@ -5629,12 +6727,21 @@ let sha1 = "d545635be1e33c542649c69173e5de6acfae34dd"; }; }; + "camelcase-5.0.0" = { + name = "camelcase"; + packageName = "camelcase"; + version = "5.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/camelcase/-/camelcase-5.0.0.tgz"; + sha512 = "faqwZqnWxbxn+F1d399ygeamQNy3lPp/H9H6rNrqYh4FSVCtcY+3cub1MxA8o9mDd55mM8Aghuu/kuyYA6VTsA=="; + }; + }; "camelcase-keys-2.1.0" = { name = "camelcase-keys"; packageName = "camelcase-keys"; version = "2.1.0"; src = fetchurl { - url = "https://registry.npmjs.org/camelcase-keys/-/camelcase-keys-2.1.0.tgz"; + url = "http://registry.npmjs.org/camelcase-keys/-/camelcase-keys-2.1.0.tgz"; sha1 = "308beeaffdf28119051efa1d932213c91b8f92e7"; }; }; @@ -5647,6 +6754,15 @@ let sha1 = "a2aa5fb1af688758259c32c141426d78923b9b77"; }; }; + "caniuse-lite-1.0.30000907" = { + name = "caniuse-lite"; + packageName = "caniuse-lite"; + version = "1.0.30000907"; + src = fetchurl { + url = "https://registry.npmjs.org/caniuse-lite/-/caniuse-lite-1.0.30000907.tgz"; + sha512 = "No5sQ/OB2Nmka8MNOOM6nJx+Hxt6MQ6h7t7kgJFu9oTuwjykyKRSBP/+i/QAyFHxeHB+ddE0Da1CG5ihx9oehQ=="; + }; + }; "capture-stack-trace-1.0.1" = { name = "capture-stack-trace"; packageName = "capture-stack-trace"; @@ -5940,7 +7056,7 @@ let packageName = "cheerio"; version = "0.17.0"; src = fetchurl { - url = "https://registry.npmjs.org/cheerio/-/cheerio-0.17.0.tgz"; + url = "http://registry.npmjs.org/cheerio/-/cheerio-0.17.0.tgz"; sha1 = "fa5ae42cc60121133d296d0b46d983215f7268ea"; }; }; @@ -5949,7 +7065,7 @@ let packageName = "cheerio"; version = "0.20.0"; src = fetchurl { - url = "https://registry.npmjs.org/cheerio/-/cheerio-0.20.0.tgz"; + url = "http://registry.npmjs.org/cheerio/-/cheerio-0.20.0.tgz"; sha1 = "5c710f2bab95653272842ba01c6ea61b3545ec35"; }; }; @@ -5958,7 +7074,7 @@ let packageName = "cheerio"; version = "0.22.0"; src = fetchurl { - url = "https://registry.npmjs.org/cheerio/-/cheerio-0.22.0.tgz"; + url = "http://registry.npmjs.org/cheerio/-/cheerio-0.22.0.tgz"; sha1 = "a9baa860a3f9b595a6b81b1a86873121ed3a269e"; }; }; @@ -5971,6 +7087,15 @@ let sha1 = "4b9f53a81b27e4d5dac31c0ffd0cfa03cc6830db"; }; }; + "cherow-1.6.8" = { + name = "cherow"; + packageName = "cherow"; + version = "1.6.8"; + src = fetchurl { + url = "https://registry.npmjs.org/cherow/-/cherow-1.6.8.tgz"; + sha512 = "if2GIw3fjE/KnFD5tddg4YJn2zveJ7PU7VcTrVHvsAdqJClB5555AsSti53XHjUyaOEiqq9x3/lZZVJ8s+VPkA=="; + }; + }; "chloride-2.2.10" = { name = "chloride"; packageName = "chloride"; @@ -6133,13 +7258,13 @@ let sha512 = "UZK3NBx2Mca+b5LsG7bY183pHWt5Y1xts4P3Pz7ENTwGVnJOUWbRb3ocjvX7hx9tq/yTAdclXm9sZ38gNuem4A=="; }; }; - "circular-json-0.5.7" = { + "circular-json-0.5.9" = { name = "circular-json"; packageName = "circular-json"; - version = "0.5.7"; + version = "0.5.9"; src = fetchurl { - url = "https://registry.npmjs.org/circular-json/-/circular-json-0.5.7.tgz"; - sha512 = "/pXoV1JA847qRKPrHbBK6YIBGFF8GOP4wzSgUOA7q0ew0vAv0iJswP+2/nZQ9uzA3Azi7eTrg9L2yzXc/7ZMIA=="; + url = "https://registry.npmjs.org/circular-json/-/circular-json-0.5.9.tgz"; + sha512 = "4ivwqHpIFJZBuhN3g/pEcdbnGUywkBblloGbkglyloVjjR3uT6tieI89MVOfbP2tHX5sgb01FuLgAOzebNlJNQ=="; }; }; "clarinet-0.11.0" = { @@ -6210,7 +7335,7 @@ let packageName = "cli-color"; version = "0.1.7"; src = fetchurl { - url = "https://registry.npmjs.org/cli-color/-/cli-color-0.1.7.tgz"; + url = "http://registry.npmjs.org/cli-color/-/cli-color-0.1.7.tgz"; sha1 = "adc3200fa471cc211b0da7f566b71e98b9d67347"; }; }; @@ -6714,7 +7839,7 @@ let packageName = "colors"; version = "0.5.1"; src = fetchurl { - url = "https://registry.npmjs.org/colors/-/colors-0.5.1.tgz"; + url = "http://registry.npmjs.org/colors/-/colors-0.5.1.tgz"; sha1 = "7d0023eaeb154e8ee9fce75dcb923d0ed1667774"; }; }; @@ -6723,7 +7848,7 @@ let packageName = "colors"; version = "0.6.2"; src = fetchurl { - url = "https://registry.npmjs.org/colors/-/colors-0.6.2.tgz"; + url = "http://registry.npmjs.org/colors/-/colors-0.6.2.tgz"; sha1 = "2423fe6678ac0c5dae8852e5d0e5be08c997abcc"; }; }; @@ -6732,7 +7857,7 @@ let packageName = "colors"; version = "1.0.3"; src = fetchurl { - url = "https://registry.npmjs.org/colors/-/colors-1.0.3.tgz"; + url = "http://registry.npmjs.org/colors/-/colors-1.0.3.tgz"; sha1 = "0433f44d809680fdeb60ed260f1b0c262e82a40b"; }; }; @@ -6741,7 +7866,7 @@ let packageName = "colors"; version = "1.1.2"; src = fetchurl { - url = "https://registry.npmjs.org/colors/-/colors-1.1.2.tgz"; + url = "http://registry.npmjs.org/colors/-/colors-1.1.2.tgz"; sha1 = "168a4701756b6a7f51a12ce0c97bfa28c084ed63"; }; }; @@ -6826,15 +7951,6 @@ let sha1 = "0137e657baa5a7541c57ac37ac5fc07d73b4dc1f"; }; }; - "combined-stream-1.0.6" = { - name = "combined-stream"; - packageName = "combined-stream"; - version = "1.0.6"; - src = fetchurl { - url = "http://registry.npmjs.org/combined-stream/-/combined-stream-1.0.6.tgz"; - sha1 = "723e7df6e801ac5613113a7e445a9b69cb632818"; - }; - }; "combined-stream-1.0.7" = { name = "combined-stream"; packageName = "combined-stream"; @@ -7561,53 +8677,53 @@ let packageName = "conventional-changelog-angular"; version = "1.6.6"; src = fetchurl { - url = "https://registry.npmjs.org/conventional-changelog-angular/-/conventional-changelog-angular-1.6.6.tgz"; + url = "http://registry.npmjs.org/conventional-changelog-angular/-/conventional-changelog-angular-1.6.6.tgz"; sha512 = "suQnFSqCxRwyBxY68pYTsFkG0taIdinHLNEAX5ivtw8bCRnIgnpvcHmlR/yjUyZIrNPYAoXlY1WiEKWgSE4BNg=="; }; }; - "conventional-changelog-angular-5.0.1" = { + "conventional-changelog-angular-5.0.2" = { name = "conventional-changelog-angular"; packageName = "conventional-changelog-angular"; - version = "5.0.1"; + version = "5.0.2"; src = fetchurl { - url = "https://registry.npmjs.org/conventional-changelog-angular/-/conventional-changelog-angular-5.0.1.tgz"; - sha512 = "q4ylJ68fWZDdrFC9z4zKcf97HW6hp7Mo2YlqD4owfXhecFKy/PJCU/1oVFF4TqochchChqmZ0Vb0e0g8/MKNlA=="; + url = "https://registry.npmjs.org/conventional-changelog-angular/-/conventional-changelog-angular-5.0.2.tgz"; + sha512 = "yx7m7lVrXmt4nKWQgWZqxSALEiAKZhOAcbxdUaU9575mB0CzXVbgrgpfSnSP7OqWDUTYGD0YVJ0MSRdyOPgAwA=="; }; }; - "conventional-changelog-core-3.1.0" = { + "conventional-changelog-core-3.1.5" = { name = "conventional-changelog-core"; packageName = "conventional-changelog-core"; - version = "3.1.0"; + version = "3.1.5"; src = fetchurl { - url = "https://registry.npmjs.org/conventional-changelog-core/-/conventional-changelog-core-3.1.0.tgz"; - sha512 = "bcZkcFXkqVgG2W8m/1wjlp2wn/BKDcrPgw3/mvSEQtzs8Pax8JbAPFpEQReHY92+EKNNXC67wLA8y2xcNx0rDA=="; + url = "https://registry.npmjs.org/conventional-changelog-core/-/conventional-changelog-core-3.1.5.tgz"; + sha512 = "iwqAotS4zk0wA4S84YY1JCUG7X3LxaRjJxuUo6GI4dZuIy243j5nOg/Ora35ExT4DOiw5dQbMMQvw2SUjh6moQ=="; }; }; - "conventional-changelog-preset-loader-2.0.1" = { + "conventional-changelog-preset-loader-2.0.2" = { name = "conventional-changelog-preset-loader"; packageName = "conventional-changelog-preset-loader"; - version = "2.0.1"; + version = "2.0.2"; src = fetchurl { - url = "https://registry.npmjs.org/conventional-changelog-preset-loader/-/conventional-changelog-preset-loader-2.0.1.tgz"; - sha512 = "HiSfhXNzAzG9klIqJaA97MMiNBR4js+53g4Px0k7tgKeCNVXmrDrm+CY+nIqcmG5NVngEPf8rAr7iji1TWW7zg=="; + url = "https://registry.npmjs.org/conventional-changelog-preset-loader/-/conventional-changelog-preset-loader-2.0.2.tgz"; + sha512 = "pBY+qnUoJPXAXXqVGwQaVmcye05xi6z231QM98wHWamGAmu/ghkBprQAwmF5bdmyobdVxiLhPY3PrCfSeUNzRQ=="; }; }; - "conventional-changelog-writer-4.0.0" = { + "conventional-changelog-writer-4.0.2" = { name = "conventional-changelog-writer"; packageName = "conventional-changelog-writer"; - version = "4.0.0"; + version = "4.0.2"; src = fetchurl { - url = "https://registry.npmjs.org/conventional-changelog-writer/-/conventional-changelog-writer-4.0.0.tgz"; - sha512 = "hMZPe0AQ6Bi05epeK/7hz80xxk59nPA5z/b63TOHq2wigM0/akreOc8N4Jam5b9nFgKWX1e9PdPv2ewgW6bcfg=="; + url = "https://registry.npmjs.org/conventional-changelog-writer/-/conventional-changelog-writer-4.0.2.tgz"; + sha512 = "d8/FQY/fix2xXEBUhOo8u3DCbyEw3UOQgYHxLsPDw+wHUDma/GQGAGsGtoH876WyNs32fViHmTOUrgRKVLvBug=="; }; }; - "conventional-commits-filter-2.0.0" = { + "conventional-commits-filter-2.0.1" = { name = "conventional-commits-filter"; packageName = "conventional-commits-filter"; - version = "2.0.0"; + version = "2.0.1"; src = fetchurl { - url = "https://registry.npmjs.org/conventional-commits-filter/-/conventional-commits-filter-2.0.0.tgz"; - sha512 = "Cfl0j1/NquB/TMVx7Wrmyq7uRM+/rPQbtVVGwzfkhZ6/yH6fcMmP0Q/9044TBZPTNdGzm46vXFXL14wbET0/Mg=="; + url = "https://registry.npmjs.org/conventional-commits-filter/-/conventional-commits-filter-2.0.1.tgz"; + sha512 = "92OU8pz/977udhBjgPEbg3sbYzIxMDFTlQT97w7KdhR9igNqdJvy8smmedAAgn4tPiqseFloKkrVfbXCVd+E7A=="; }; }; "conventional-commits-parser-2.1.7" = { @@ -7615,26 +8731,26 @@ let packageName = "conventional-commits-parser"; version = "2.1.7"; src = fetchurl { - url = "https://registry.npmjs.org/conventional-commits-parser/-/conventional-commits-parser-2.1.7.tgz"; + url = "http://registry.npmjs.org/conventional-commits-parser/-/conventional-commits-parser-2.1.7.tgz"; sha512 = "BoMaddIEJ6B4QVMSDu9IkVImlGOSGA1I2BQyOZHeLQ6qVOJLcLKn97+fL6dGbzWEiqDzfH4OkcveULmeq2MHFQ=="; }; }; - "conventional-commits-parser-3.0.0" = { + "conventional-commits-parser-3.0.1" = { name = "conventional-commits-parser"; packageName = "conventional-commits-parser"; - version = "3.0.0"; + version = "3.0.1"; src = fetchurl { - url = "https://registry.npmjs.org/conventional-commits-parser/-/conventional-commits-parser-3.0.0.tgz"; - sha512 = "GWh71U26BLWgMykCp+VghZ4s64wVbtseECcKQ/PvcPZR2cUnz+FUc2J9KjxNl7/ZbCxST8R03c9fc+Vi0umS9Q=="; + url = "https://registry.npmjs.org/conventional-commits-parser/-/conventional-commits-parser-3.0.1.tgz"; + sha512 = "P6U5UOvDeidUJ8ebHVDIoXzI7gMlQ1OF/id6oUvp8cnZvOXMt1n8nYl74Ey9YMn0uVQtxmCtjPQawpsssBWtGg=="; }; }; - "conventional-recommended-bump-4.0.1" = { + "conventional-recommended-bump-4.0.4" = { name = "conventional-recommended-bump"; packageName = "conventional-recommended-bump"; - version = "4.0.1"; + version = "4.0.4"; src = fetchurl { - url = "https://registry.npmjs.org/conventional-recommended-bump/-/conventional-recommended-bump-4.0.1.tgz"; - sha512 = "9waJvW01TUs4HQJ3khwGSSlTlKsY+5u7OrxHL+oWEoGNvaNO/0qL6qqnhS3J0Fq9fNKA9bmlf5cOXjCQoW+I4Q=="; + url = "https://registry.npmjs.org/conventional-recommended-bump/-/conventional-recommended-bump-4.0.4.tgz"; + sha512 = "9mY5Yoblq+ZMqJpBzgS+RpSq+SUfP2miOR3H/NR9drGf08WCrY9B6HAGJZEm6+ThsVP917VHAahSOjM6k1vhPg=="; }; }; "convert-source-map-1.1.3" = { @@ -7799,13 +8915,13 @@ let sha512 = "Mw+adcfzPxcPeI+0WlvRrr/3lGVO0bD75SxX6811cxSh1Wbxx7xZBGK1eVtDf6si8rg2lhnUjsVLMFMfbRIuwA=="; }; }; - "cookies-0.7.2" = { + "cookies-0.7.3" = { name = "cookies"; packageName = "cookies"; - version = "0.7.2"; + version = "0.7.3"; src = fetchurl { - url = "https://registry.npmjs.org/cookies/-/cookies-0.7.2.tgz"; - sha512 = "J2JjH9T3PUNKPHknprxgCrCaZshIfxW2j49gq1E1CP5Micj1LppWAR2y9EHSQAzEiX84zOsScWNwUZ0b/ChlMw=="; + url = "https://registry.npmjs.org/cookies/-/cookies-0.7.3.tgz"; + sha512 = "+gixgxYSgQLTaTIilDHAdlNPZDENDQernEMiIcZpYYP14zgHsCt4Ce1FEjFtcp6GefhozebB6orvhAAWx/IS0A=="; }; }; "copy-concurrently-1.0.5" = { @@ -7912,7 +9028,7 @@ let packageName = "core-js"; version = "2.3.0"; src = fetchurl { - url = "https://registry.npmjs.org/core-js/-/core-js-2.3.0.tgz"; + url = "http://registry.npmjs.org/core-js/-/core-js-2.3.0.tgz"; sha1 = "fab83fbb0b2d8dc85fa636c4b9d34c75420c6d65"; }; }; @@ -7943,6 +9059,15 @@ let sha1 = "2bd381f2eb201020105cd50ea59da63090694686"; }; }; + "cors-2.8.5" = { + name = "cors"; + packageName = "cors"; + version = "2.8.5"; + src = fetchurl { + url = "https://registry.npmjs.org/cors/-/cors-2.8.5.tgz"; + sha512 = "KIHbLJqu73RGr/hnbrO9uBeixNGuvSQjul/jdFvS/KFSIH1hWVd1ng7zOHx+YrEfInLG7q4n6GHQ9cDtxv/P6g=="; + }; + }; "corser-2.0.1" = { name = "corser"; packageName = "corser"; @@ -7979,13 +9104,13 @@ let sha512 = "6e5vDdrXZD+t5v0L8CrurPeybg4Fmf+FCSYxXKYVAqLUtyCSbuyqE059d0kDthTNRzKVjL7QMgNpEUlsoYH3iQ=="; }; }; - "cosmiconfig-5.0.6" = { + "cosmiconfig-5.0.7" = { name = "cosmiconfig"; packageName = "cosmiconfig"; - version = "5.0.6"; + version = "5.0.7"; src = fetchurl { - url = "https://registry.npmjs.org/cosmiconfig/-/cosmiconfig-5.0.6.tgz"; - sha512 = "6DWfizHriCrFWURP1/qyhsiFvYdlJzbCzmtFWh744+KyWsJo5+kPzUZZaMRSSItoYc0pxFX7gEO7ZC1/gN/7AQ=="; + url = "https://registry.npmjs.org/cosmiconfig/-/cosmiconfig-5.0.7.tgz"; + sha512 = "PcLqxTKiDmNT6pSpy4N6KtuPwb53W+2tzNvwOZw0WH9N6O0vLIBq0x8aj8Oj75ere4YcGi48bDFCL+3fRJdlNA=="; }; }; "couch-login-0.1.20" = { @@ -8105,13 +9230,22 @@ let sha512 = "KMd0KuvwVUg1grlRd5skG9ZkSbBYDDkAjDUMLnvxdRn0rL7ph3IwoOk7I8u1yLX4HYjGiLVlWYO55YWNNPjJFA=="; }; }; - "cron-1.4.1" = { + "cron-1.5.0" = { name = "cron"; packageName = "cron"; - version = "1.4.1"; + version = "1.5.0"; + src = fetchurl { + url = "https://registry.npmjs.org/cron/-/cron-1.5.0.tgz"; + sha512 = "j7zMFLrcSta53xqOvETUt8ge+PM14GtF47gEGJJeVlM6qP24/eWHSgtiWiEiKBR2sHS8xZaBQZq4D7vFXg8dcQ=="; + }; + }; + "cross-env-5.2.0" = { + name = "cross-env"; + packageName = "cross-env"; + version = "5.2.0"; src = fetchurl { - url = "https://registry.npmjs.org/cron/-/cron-1.4.1.tgz"; - sha512 = "HlglwQUNh6bhgfoDR6aEzyHN2T4bc0XhxJxkNPp+Ry7lK7Noby94pHcngYf634+MtxplwZm8okFgNe+R9PGDjg=="; + url = "https://registry.npmjs.org/cross-env/-/cross-env-5.2.0.tgz"; + sha512 = "jtdNFfFW1hB7sMhr/H6rW1Z45LFqyI431m3qU6bFXcQ3Eh7LtBuG3h74o7ohHZ3crrRkkqHlo4jYHFPcjroANg=="; }; }; "cross-fetch-2.2.2" = { @@ -8164,7 +9298,7 @@ let packageName = "cross-spawn-async"; version = "2.2.5"; src = fetchurl { - url = "https://registry.npmjs.org/cross-spawn-async/-/cross-spawn-async-2.2.5.tgz"; + url = "http://registry.npmjs.org/cross-spawn-async/-/cross-spawn-async-2.2.5.tgz"; sha1 = "845ff0c0834a3ded9d160daca6d390906bb288cc"; }; }; @@ -8209,7 +9343,7 @@ let packageName = "cryptiles"; version = "0.1.3"; src = fetchurl { - url = "https://registry.npmjs.org/cryptiles/-/cryptiles-0.1.3.tgz"; + url = "http://registry.npmjs.org/cryptiles/-/cryptiles-0.1.3.tgz"; sha1 = "1a556734f06d24ba34862ae9cb9e709a3afbff1c"; }; }; @@ -8218,17 +9352,17 @@ let packageName = "cryptiles"; version = "2.0.5"; src = fetchurl { - url = "https://registry.npmjs.org/cryptiles/-/cryptiles-2.0.5.tgz"; + url = "http://registry.npmjs.org/cryptiles/-/cryptiles-2.0.5.tgz"; sha1 = "3bdfecdc608147c1c67202fa291e7dca59eaa3b8"; }; }; - "cryptiles-3.1.2" = { + "cryptiles-3.1.4" = { name = "cryptiles"; packageName = "cryptiles"; - version = "3.1.2"; + version = "3.1.4"; src = fetchurl { - url = "https://registry.npmjs.org/cryptiles/-/cryptiles-3.1.2.tgz"; - sha1 = "a89fbb220f5ce25ec56e8c4aa8a4fd7b5b0d29fe"; + url = "https://registry.npmjs.org/cryptiles/-/cryptiles-3.1.4.tgz"; + sha512 = "8I1sgZHfVwcSOY6mSGpVU3lw/GSIZvusg8dD2+OGehCJpOhQRLNcH0qb9upQnOH4XhgxxFJSg6E2kx95deb1Tw=="; }; }; "crypto-0.0.3" = { @@ -8308,26 +9442,26 @@ let packageName = "css-select"; version = "1.2.0"; src = fetchurl { - url = "https://registry.npmjs.org/css-select/-/css-select-1.2.0.tgz"; + url = "http://registry.npmjs.org/css-select/-/css-select-1.2.0.tgz"; sha1 = "2b3a110539c5355f1cd8d314623e870b121ec858"; }; }; - "css-select-2.0.0" = { + "css-select-2.0.2" = { name = "css-select"; packageName = "css-select"; - version = "2.0.0"; + version = "2.0.2"; src = fetchurl { - url = "https://registry.npmjs.org/css-select/-/css-select-2.0.0.tgz"; - sha512 = "MGhoq1S9EyPgZIGnts8Yz5WwUOyHmPMdlqeifsYs/xFX7AAm3hY0RJe1dqVlXtYPI66Nsk39R/sa5/ree6L2qg=="; + url = "https://registry.npmjs.org/css-select/-/css-select-2.0.2.tgz"; + sha512 = "dSpYaDVoWaELjvZ3mS6IKZM/y2PMPa/XYoEfYNZePL4U/XgyxZNroHEHReDx/d+VgXh9VbCTtFqLkFbmeqeaRQ=="; }; }; - "css-select-base-adapter-0.1.0" = { + "css-select-base-adapter-0.1.1" = { name = "css-select-base-adapter"; packageName = "css-select-base-adapter"; - version = "0.1.0"; + version = "0.1.1"; src = fetchurl { - url = "https://registry.npmjs.org/css-select-base-adapter/-/css-select-base-adapter-0.1.0.tgz"; - sha1 = "0102b3d14630df86c3eb9fa9f5456270106cf990"; + url = "https://registry.npmjs.org/css-select-base-adapter/-/css-select-base-adapter-0.1.1.tgz"; + sha512 = "jQVeeRG70QI08vSTwf1jHxp74JoZsr2XSgETae8/xC8ovSnL2WF87GTLO86Sbwdt2lK4Umg4HnnwMO4YF3Ce7w=="; }; }; "css-stringify-1.0.5" = { @@ -8366,13 +9500,13 @@ let sha1 = "83834230cc9f74c457de59eebd1543feeb83b7ec"; }; }; - "css-what-2.1.0" = { + "css-what-2.1.2" = { name = "css-what"; packageName = "css-what"; - version = "2.1.0"; + version = "2.1.2"; src = fetchurl { - url = "https://registry.npmjs.org/css-what/-/css-what-2.1.0.tgz"; - sha1 = "9467d032c38cfaefb9f2d79501253062f87fa1bd"; + url = "https://registry.npmjs.org/css-what/-/css-what-2.1.2.tgz"; + sha512 = "wan8dMWQ0GUeF7DGEPVjhHemVW/vy6xUYmFzRY8RYqgA0JtXC9rJmbScBjqSu6dg9q0lwPQy6ZAmJVr3PPTvqQ=="; }; }; "cssauron-1.4.0" = { @@ -8456,6 +9590,15 @@ let sha1 = "d1cfd8743c2f849a0abb2fd544db56695d19a490"; }; }; + "csv-parser-1.12.1" = { + name = "csv-parser"; + packageName = "csv-parser"; + version = "1.12.1"; + src = fetchurl { + url = "http://registry.npmjs.org/csv-parser/-/csv-parser-1.12.1.tgz"; + sha512 = "r45M92nLnGP246ot0Yo5RvbiiMF5Bw/OTIdWJ3OQ4Vbv4hpOeoXVIPxdSmUw+fPJlQOseY+iigJyLSfPMIrddQ=="; + }; + }; "csv-stringify-0.0.8" = { name = "csv-stringify"; packageName = "csv-stringify"; @@ -8470,7 +9613,7 @@ let packageName = "ctype"; version = "0.5.2"; src = fetchurl { - url = "https://registry.npmjs.org/ctype/-/ctype-0.5.2.tgz"; + url = "http://registry.npmjs.org/ctype/-/ctype-0.5.2.tgz"; sha1 = "fe8091d468a373a0b0c9ff8bbfb3425c00973a1d"; }; }; @@ -8479,7 +9622,7 @@ let packageName = "ctype"; version = "0.5.3"; src = fetchurl { - url = "https://registry.npmjs.org/ctype/-/ctype-0.5.3.tgz"; + url = "http://registry.npmjs.org/ctype/-/ctype-0.5.3.tgz"; sha1 = "82c18c2461f74114ef16c135224ad0b9144ca12f"; }; }; @@ -8578,7 +9721,7 @@ let packageName = "d"; version = "1.0.0"; src = fetchurl { - url = "https://registry.npmjs.org/d/-/d-1.0.0.tgz"; + url = "http://registry.npmjs.org/d/-/d-1.0.0.tgz"; sha1 = "754bb5bfe55451da69a58b94d45f4c5b0462d58f"; }; }; @@ -8807,6 +9950,15 @@ let sha512 = "jyCETtSl3VMZMWeRo7iY1FL19ges1t55hMo5yaam4Jrsm5EPL89UQkoQRyiI+Yf4k8r2ZpdngkV8hr1lIdjb3Q=="; }; }; + "death-1.1.0" = { + name = "death"; + packageName = "death"; + version = "1.1.0"; + src = fetchurl { + url = "https://registry.npmjs.org/death/-/death-1.1.0.tgz"; + sha1 = "01aa9c401edd92750514470b8266390c66c67318"; + }; + }; "debounce-1.1.0" = { name = "debounce"; packageName = "debounce"; @@ -9149,15 +10301,6 @@ let sha512 = "Q89Z26KAfA3lpPGhbF6XMfYAm3jIV3avViy6KOJ2JLzFbeWHOvPQUu5aSJIWXap3gDZC2y1eF5HXEPI2wGqgvw=="; }; }; - "deepmerge-2.1.1" = { - name = "deepmerge"; - packageName = "deepmerge"; - version = "2.1.1"; - src = fetchurl { - url = "https://registry.npmjs.org/deepmerge/-/deepmerge-2.1.1.tgz"; - sha512 = "urQxA1smbLZ2cBbXbaYObM1dJ82aJ2H57A1C/Kklfh/ZN1bgH4G/n5KWhdNfOK11W98gqZfyYj7W4frJJRwA2w=="; - }; - }; "deepmerge-2.2.1" = { name = "deepmerge"; packageName = "deepmerge"; @@ -9203,6 +10346,15 @@ let sha1 = "c656051e9817d9ff08ed881477f3fe4019f3ef7d"; }; }; + "defer-to-connect-1.0.1" = { + name = "defer-to-connect"; + packageName = "defer-to-connect"; + version = "1.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/defer-to-connect/-/defer-to-connect-1.0.1.tgz"; + sha512 = "2e0FJesseUqQj671gvZWfUyxpnFx/5n4xleamlpCD3U6Fm5dh5qzmmLNxNhtmHF06+SYVHH8QU6FACffYTnj0Q=="; + }; + }; "deferred-leveldown-0.2.0" = { name = "deferred-leveldown"; packageName = "deferred-leveldown"; @@ -9221,6 +10373,15 @@ let sha512 = "ajbXqRPMXRlcdyt0TuWqknOJkp1JgQjGB7xOl2V+ebol7/U11E9h3/nCZAtN1M7djmAJEIhypCUc1tIWxdQAuQ=="; }; }; + "deferred-leveldown-4.0.2" = { + name = "deferred-leveldown"; + packageName = "deferred-leveldown"; + version = "4.0.2"; + src = fetchurl { + url = "https://registry.npmjs.org/deferred-leveldown/-/deferred-leveldown-4.0.2.tgz"; + sha512 = "5fMC8ek8alH16QiV0lTCis610D1Zt1+LA4MS4d63JgS32lrCjTFDUFz2ao09/j2I4Bqb5jL4FZYwu7Jz0XO1ww=="; + }; + }; "define-properties-1.1.3" = { name = "define-properties"; packageName = "define-properties"; @@ -9284,13 +10445,13 @@ let sha1 = "fcf490a37ece266464d9cc431ab98c5819ced095"; }; }; - "del-2.2.2" = { + "del-3.0.0" = { name = "del"; packageName = "del"; - version = "2.2.2"; + version = "3.0.0"; src = fetchurl { - url = "https://registry.npmjs.org/del/-/del-2.2.2.tgz"; - sha1 = "c12c981d067846c84bcaf862cff930d907ffd1a8"; + url = "https://registry.npmjs.org/del/-/del-3.0.0.tgz"; + sha1 = "53ecf699ffcbcb39637691ab13baf160819766e5"; }; }; "delayed-stream-0.0.5" = { @@ -9352,19 +10513,10 @@ let packageName = "depd"; version = "1.0.1"; src = fetchurl { - url = "https://registry.npmjs.org/depd/-/depd-1.0.1.tgz"; + url = "http://registry.npmjs.org/depd/-/depd-1.0.1.tgz"; sha1 = "80aec64c9d6d97e65cc2a9caa93c0aa6abf73aaa"; }; }; - "depd-1.1.1" = { - name = "depd"; - packageName = "depd"; - version = "1.1.1"; - src = fetchurl { - url = "https://registry.npmjs.org/depd/-/depd-1.1.1.tgz"; - sha1 = "5783b4e1c459f06fa5ca27f991f3d06e7a310359"; - }; - }; "depd-1.1.2" = { name = "depd"; packageName = "depd"; @@ -9635,6 +10787,15 @@ let sha1 = "4d5afc5187edba67ec6ab0e55f6422a0e2cb7338"; }; }; + "discontinuous-range-1.0.0" = { + name = "discontinuous-range"; + packageName = "discontinuous-range"; + version = "1.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/discontinuous-range/-/discontinuous-range-1.0.0.tgz"; + sha1 = "e38331f0844bba49b9a9cb71c771585aab1bc65a"; + }; + }; "discovery-channel-5.5.1" = { name = "discovery-channel"; packageName = "discovery-channel"; @@ -9662,13 +10823,13 @@ let sha1 = "57ddacb47324ae5f58d2cc0da886db4ce9eeb718"; }; }; - "dispensary-0.22.0" = { + "dispensary-0.26.0" = { name = "dispensary"; packageName = "dispensary"; - version = "0.22.0"; + version = "0.26.0"; src = fetchurl { - url = "https://registry.npmjs.org/dispensary/-/dispensary-0.22.0.tgz"; - sha512 = "iwpIOQ4T+fJ55PAPE4G7b8MubUN8dGyZa78VrD6A+XqSnqs844npoGvpwSEETnn064JaaS4gqLcgAfTGR4p2+g=="; + url = "https://registry.npmjs.org/dispensary/-/dispensary-0.26.0.tgz"; + sha512 = "Cw0N6Hf8/y4vH9/NvDPGLd2+Mve9xs+41+sULJ4ODHuhZ+9CnJ2eMl2ju2udL/UACY0Vcxw3TzyoDRBNaU/0DQ=="; }; }; "diveSync-0.3.0" = { @@ -9874,7 +11035,7 @@ let packageName = "domelementtype"; version = "1.1.3"; src = fetchurl { - url = "https://registry.npmjs.org/domelementtype/-/domelementtype-1.1.3.tgz"; + url = "http://registry.npmjs.org/domelementtype/-/domelementtype-1.1.3.tgz"; sha1 = "bd28773e2642881aec51544924299c5cd822185b"; }; }; @@ -9883,7 +11044,7 @@ let packageName = "domelementtype"; version = "1.3.0"; src = fetchurl { - url = "https://registry.npmjs.org/domelementtype/-/domelementtype-1.3.0.tgz"; + url = "http://registry.npmjs.org/domelementtype/-/domelementtype-1.3.0.tgz"; sha1 = "b17aed82e8ab59e52dd9c19b1756e0fc187204c2"; }; }; @@ -10013,6 +11174,15 @@ let sha1 = "63537f977f99266a30eb8a2a2fbd1f20b8000f7a"; }; }; + "download-7.1.0" = { + name = "download"; + packageName = "download"; + version = "7.1.0"; + src = fetchurl { + url = "https://registry.npmjs.org/download/-/download-7.1.0.tgz"; + sha512 = "xqnBTVd/E+GxJVrX5/eUJiLYjCGPwMpdL+jGhGU57BvtcA7wwhtHVbXBeUk51kOpW3S7Jn3BQbN9Q1R1Km2qDQ=="; + }; + }; "download-git-repo-1.1.0" = { name = "download-git-repo"; packageName = "download-git-repo"; @@ -10274,6 +11444,15 @@ let sha512 = "0xy4A/twfrRCnkhfk8ErDi5DqdAsAqeGxht4xkCUrsvhhbQNs7E+4jV0CN7+NKIY0aHE72+XvqtBIXzD31ZbXQ=="; }; }; + "electron-to-chromium-1.3.84" = { + name = "electron-to-chromium"; + packageName = "electron-to-chromium"; + version = "1.3.84"; + src = fetchurl { + url = "https://registry.npmjs.org/electron-to-chromium/-/electron-to-chromium-1.3.84.tgz"; + sha512 = "IYhbzJYOopiTaNWMBp7RjbecUBsbnbDneOP86f3qvS0G0xfzwNSvMJpTrvi5/Y1gU7tg2NAgeg8a8rCYvW9Whw=="; + }; + }; "elegant-spinner-1.0.1" = { name = "elegant-spinner"; packageName = "elegant-spinner"; @@ -10379,7 +11558,7 @@ let packageName = "enabled"; version = "1.0.2"; src = fetchurl { - url = "https://registry.npmjs.org/enabled/-/enabled-1.0.2.tgz"; + url = "http://registry.npmjs.org/enabled/-/enabled-1.0.2.tgz"; sha1 = "965f6513d2c2d1c5f4652b64a2e3396467fc2f93"; }; }; @@ -10410,6 +11589,15 @@ let sha512 = "AlSE+ugBIpLL0i9if2SlnOZ4oWj/XvBb8tw2Ie/pFB73vdYs5O/6plRyqIgjbZbz8onaL20AAuMP87LWbP56IQ=="; }; }; + "encoding-down-5.0.4" = { + name = "encoding-down"; + packageName = "encoding-down"; + version = "5.0.4"; + src = fetchurl { + url = "https://registry.npmjs.org/encoding-down/-/encoding-down-5.0.4.tgz"; + sha512 = "8CIZLDcSKxgzT+zX8ZVfgNbu8Md2wq/iqa1Y7zyVR18QBEAc0Nmzuvj/N5ykSKpfGzjM8qxbaFntLPwnVoUhZw=="; + }; + }; "end-of-stream-0.1.5" = { name = "end-of-stream"; packageName = "end-of-stream"; @@ -10460,7 +11648,7 @@ let packageName = "engine.io"; version = "1.3.1"; src = fetchurl { - url = "https://registry.npmjs.org/engine.io/-/engine.io-1.3.1.tgz"; + url = "http://registry.npmjs.org/engine.io/-/engine.io-1.3.1.tgz"; sha1 = "2d968308fffae5d17f5209b6775246e90d8a705e"; }; }; @@ -10473,13 +11661,13 @@ let sha512 = "j1DWIcktw4hRwrv6nWx++5nFH2X64x16MAG2P0Lmi5Dvdfi3I+Jhc7JKJIdAmDJa+5aZ/imHV7dWRPy2Cqjh3A=="; }; }; - "engine.io-3.2.0" = { + "engine.io-3.2.1" = { name = "engine.io"; packageName = "engine.io"; - version = "3.2.0"; + version = "3.2.1"; src = fetchurl { - url = "https://registry.npmjs.org/engine.io/-/engine.io-3.2.0.tgz"; - sha512 = "mRbgmAtQ4GAlKwuPnnAvXXwdPhEx+jkc0OBCLrXuD/CRvwNK3AxRSnqK4FSqmAMRRHryVJP8TopOvmEaA64fKw=="; + url = "https://registry.npmjs.org/engine.io/-/engine.io-3.2.1.tgz"; + sha512 = "+VlKzHzMhaU+GsCIg4AoXF1UdDFjHHwMmMKqMJNDNLlUlejz58FCy4LBqB2YVJskHGYl06BatYWKP2TVdVXE5w=="; }; }; "engine.io-client-1.3.1" = { @@ -10487,7 +11675,7 @@ let packageName = "engine.io-client"; version = "1.3.1"; src = fetchurl { - url = "https://registry.npmjs.org/engine.io-client/-/engine.io-client-1.3.1.tgz"; + url = "http://registry.npmjs.org/engine.io-client/-/engine.io-client-1.3.1.tgz"; sha1 = "1c5a65d5c5af6d04b44c22c3dbcd95c39ed1c989"; }; }; @@ -10505,7 +11693,7 @@ let packageName = "engine.io-client"; version = "3.2.1"; src = fetchurl { - url = "https://registry.npmjs.org/engine.io-client/-/engine.io-client-3.2.1.tgz"; + url = "http://registry.npmjs.org/engine.io-client/-/engine.io-client-3.2.1.tgz"; sha512 = "y5AbkytWeM4jQr7m/koQLc5AxpRKC1hEVUb/s1FUAWEJq5AzJJ4NLvzuKPuxtDi5Mq755WuDvZ6Iv2rXj4PTzw=="; }; }; @@ -10514,7 +11702,7 @@ let packageName = "engine.io-parser"; version = "1.0.6"; src = fetchurl { - url = "https://registry.npmjs.org/engine.io-parser/-/engine.io-parser-1.0.6.tgz"; + url = "http://registry.npmjs.org/engine.io-parser/-/engine.io-parser-1.0.6.tgz"; sha1 = "d38813143a411cb3b914132ab05bf99e6f7a248e"; }; }; @@ -10523,17 +11711,17 @@ let packageName = "engine.io-parser"; version = "1.3.2"; src = fetchurl { - url = "https://registry.npmjs.org/engine.io-parser/-/engine.io-parser-1.3.2.tgz"; + url = "http://registry.npmjs.org/engine.io-parser/-/engine.io-parser-1.3.2.tgz"; sha1 = "937b079f0007d0893ec56d46cb220b8cb435220a"; }; }; - "engine.io-parser-2.1.2" = { + "engine.io-parser-2.1.3" = { name = "engine.io-parser"; packageName = "engine.io-parser"; - version = "2.1.2"; + version = "2.1.3"; src = fetchurl { - url = "https://registry.npmjs.org/engine.io-parser/-/engine.io-parser-2.1.2.tgz"; - sha512 = "dInLFzr80RijZ1rGpx1+56/uFoH7/7InhH3kZt+Ms6hT8tNx3NGW/WNSA/f8As1WkOfkuyb3tnRyuXGxusclMw=="; + url = "https://registry.npmjs.org/engine.io-parser/-/engine.io-parser-2.1.3.tgz"; + sha512 = "6HXPre2O4Houl7c4g7Ic/XzPnHBvaEmN90vtRO9uLmwtRqQmTOw0QMevL1TOfL2Cpu1VzsaTmMotQgMdkzGkVA=="; }; }; "enhanced-resolve-2.3.0" = { @@ -10577,17 +11765,17 @@ let packageName = "entities"; version = "1.0.0"; src = fetchurl { - url = "https://registry.npmjs.org/entities/-/entities-1.0.0.tgz"; + url = "http://registry.npmjs.org/entities/-/entities-1.0.0.tgz"; sha1 = "b2987aa3821347fcde642b24fdfc9e4fb712bf26"; }; }; - "entities-1.1.1" = { + "entities-1.1.2" = { name = "entities"; packageName = "entities"; - version = "1.1.1"; + version = "1.1.2"; src = fetchurl { - url = "https://registry.npmjs.org/entities/-/entities-1.1.1.tgz"; - sha1 = "6e5c2d0a5621b5dadaecef80b90edfb5cd7772f0"; + url = "https://registry.npmjs.org/entities/-/entities-1.1.2.tgz"; + sha512 = "f2LZMYl1Fzu7YSBKg+RoROelpOaNrcGmE9AZubeDfrCEia483oW4MI4VyFd5VNHIgQ/7qm1I0wUHK1eJnn2y2w=="; }; }; "env-paths-1.0.0" = { @@ -10626,13 +11814,13 @@ let sha512 = "rXbzXWvnQxy+TcqZlARbWVQwgGVVouVJgFZhLVN5htjLxl1thstrP2ZGi0pXC309AbK7gVOPU+ulz/tmpCI7iw=="; }; }; - "epidemic-broadcast-trees-6.3.4" = { + "epidemic-broadcast-trees-6.3.5" = { name = "epidemic-broadcast-trees"; packageName = "epidemic-broadcast-trees"; - version = "6.3.4"; + version = "6.3.5"; src = fetchurl { - url = "https://registry.npmjs.org/epidemic-broadcast-trees/-/epidemic-broadcast-trees-6.3.4.tgz"; - sha512 = "ucs3AI3ebPCDFGw8B0SUBwzcY2WqKrbJeqYeeX9KF+XvsO7GFEe0L+1hXPfJcEScfGPByXJNACkYwUFnNaOueQ=="; + url = "https://registry.npmjs.org/epidemic-broadcast-trees/-/epidemic-broadcast-trees-6.3.5.tgz"; + sha512 = "FYCOslXU7OBkz8A9FXsykcpgby3WKcRdLTCr1LivLLSU2nzaO/x86jBGNFEZkezZPx9/Z5fDVX8SGQyXLz8WZQ=="; }; }; "err-code-1.1.2" = { @@ -10820,7 +12008,7 @@ let packageName = "es6-promisify"; version = "5.0.0"; src = fetchurl { - url = "https://registry.npmjs.org/es6-promisify/-/es6-promisify-5.0.0.tgz"; + url = "http://registry.npmjs.org/es6-promisify/-/es6-promisify-5.0.0.tgz"; sha1 = "5109d62f3e56ea967c4b63505aef08291c8a5203"; }; }; @@ -10838,7 +12026,7 @@ let packageName = "es6-shim"; version = "0.21.1"; src = fetchurl { - url = "https://registry.npmjs.org/es6-shim/-/es6-shim-0.21.1.tgz"; + url = "http://registry.npmjs.org/es6-shim/-/es6-shim-0.21.1.tgz"; sha1 = "6621bce72e1ac80a6e1f002abd4e789f12489fd2"; }; }; @@ -10959,13 +12147,13 @@ let sha512 = "D5nG2rErquLUstgUaxJlWB5+gu+U/3VDY0fk/Iuq8y9CUFy/7Y6oF4N2cR1tV8knzQvciIbfqfohd359xTLIKQ=="; }; }; - "eslint-5.7.0" = { + "eslint-5.9.0" = { name = "eslint"; packageName = "eslint"; - version = "5.7.0"; + version = "5.9.0"; src = fetchurl { - url = "https://registry.npmjs.org/eslint/-/eslint-5.7.0.tgz"; - sha512 = "zYCeFQahsxffGl87U2aJ7DPyH8CbWgxBC213Y8+TCanhUTf2gEvfq3EKpHmEcozTLyPmGe9LZdMAwC/CpJBM5A=="; + url = "https://registry.npmjs.org/eslint/-/eslint-5.9.0.tgz"; + sha512 = "g4KWpPdqN0nth+goDNICNXGfJF7nNnepthp46CAlJoJtC5K/cLu3NgCM3AHu1CkJ5Hzt9V0Y0PBAO6Ay/gGb+w=="; }; }; "eslint-plugin-no-unsafe-innerhtml-1.0.16" = { @@ -10977,6 +12165,15 @@ let sha1 = "7d02878c8e9bf7916b88836d5ac122b42f151932"; }; }; + "eslint-scope-3.7.1" = { + name = "eslint-scope"; + packageName = "eslint-scope"; + version = "3.7.1"; + src = fetchurl { + url = "https://registry.npmjs.org/eslint-scope/-/eslint-scope-3.7.1.tgz"; + sha1 = "3d63c3edfda02e06e01a452ad88caacc7cdcb6e8"; + }; + }; "eslint-scope-4.0.0" = { name = "eslint-scope"; packageName = "eslint-scope"; @@ -11018,7 +12215,7 @@ let packageName = "espree"; version = "3.5.4"; src = fetchurl { - url = "https://registry.npmjs.org/espree/-/espree-3.5.4.tgz"; + url = "http://registry.npmjs.org/espree/-/espree-3.5.4.tgz"; sha512 = "yAcIQxtmMiB/jL32dzEp2enBeidsB7xWPLNiw3IIkpVds1P+h7qF9YwJq1yUNzp2OKXgAprs4F61ih66UsoD1A=="; }; }; @@ -11031,6 +12228,15 @@ let sha512 = "kapdTCt1bjmspxStVKX6huolXVV5ZfyZguY1lcfhVVZstce3bqxH9mcLzNn3/mlgW6wQ732+0fuG9v7h0ZQoKg=="; }; }; + "espree-4.1.0" = { + name = "espree"; + packageName = "espree"; + version = "4.1.0"; + src = fetchurl { + url = "https://registry.npmjs.org/espree/-/espree-4.1.0.tgz"; + sha512 = "I5BycZW6FCVIub93TeVY1s7vjhP9CY6cXCznIRfiig7nRviKZYdRnj/sHEWC6A7WE9RDWOFq9+7OsWSYz8qv2w=="; + }; + }; "esprima-1.0.4" = { name = "esprima"; packageName = "esprima"; @@ -11112,6 +12318,15 @@ let sha1 = "0dee3fed31fcd469618ce7342099fc1afa0bdb13"; }; }; + "estree-walker-0.5.2" = { + name = "estree-walker"; + packageName = "estree-walker"; + version = "0.5.2"; + src = fetchurl { + url = "https://registry.npmjs.org/estree-walker/-/estree-walker-0.5.2.tgz"; + sha512 = "XpCnW/AE10ws/kDAs37cngSkvgIR8aN3G0MS85m7dUpuK2EREo9VJ00uvw6Dg/hXEpfsE1I1TvJOJr+Z+TL+ig=="; + }; + }; "esutils-2.0.2" = { name = "esutils"; packageName = "esutils"; @@ -11373,6 +12588,15 @@ let sha1 = "d8d76bbc1b55217ed190fd6dd49d3c774ecfc8da"; }; }; + "execa-0.9.0" = { + name = "execa"; + packageName = "execa"; + version = "0.9.0"; + src = fetchurl { + url = "https://registry.npmjs.org/execa/-/execa-0.9.0.tgz"; + sha512 = "BbUMBiX4hqiHZUA5+JujIjNb6TyAlp2D5KLheMjMluwOuzcnylDL4AxZYLLn1n2AGB49eSWwyKvvEQoRpnAtmA=="; + }; + }; "execa-1.0.0" = { name = "execa"; packageName = "execa"; @@ -11544,15 +12768,6 @@ let sha1 = "8df3d5a9ac848585f00a0777601823faecd3b148"; }; }; - "express-4.16.3" = { - name = "express"; - packageName = "express"; - version = "4.16.3"; - src = fetchurl { - url = "http://registry.npmjs.org/express/-/express-4.16.3.tgz"; - sha1 = "6af8a502350db3246ecc4becf6b5a34d22f7ed53"; - }; - }; "express-4.16.4" = { name = "express"; packageName = "express"; @@ -11562,13 +12777,13 @@ let sha512 = "j12Uuyb4FMrd/qQAm6uCHAkPtO8FDTRJZBDd5D2KOL2eLaz1yUNdUB/NOIyq0iU4q4cFarsUCrnFDPBcnksuOg=="; }; }; - "express-5.0.0-alpha.6" = { + "express-5.0.0-alpha.7" = { name = "express"; packageName = "express"; - version = "5.0.0-alpha.6"; + version = "5.0.0-alpha.7"; src = fetchurl { - url = "https://registry.npmjs.org/express/-/express-5.0.0-alpha.6.tgz"; - sha1 = "85dc44d7e90d4809041407f388f239b5bd2f681e"; + url = "https://registry.npmjs.org/express/-/express-5.0.0-alpha.7.tgz"; + sha512 = "3FW+yXzYCViXf6Ty9TN9IKLW+rC8qok3ktS4hS1FILAEnMnfnDpQ+23rZVvWC0Ul1alYpJXx7xSBSBp073970g=="; }; }; "express-handlebars-3.0.0" = { @@ -11661,6 +12876,15 @@ let sha1 = "07e4418737cb1f513c32c6ea48d8b8c8e0471abb"; }; }; + "ext-name-5.0.0" = { + name = "ext-name"; + packageName = "ext-name"; + version = "5.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/ext-name/-/ext-name-5.0.0.tgz"; + sha512 = "yblEwXAbGv1VQDmow7s38W77hzAgJAO50ztBLMcUyUBfxv1HC+LGwtiEN+Co6LtlqT/5uwVOxsD4TNIilWhwdQ=="; + }; + }; "extend-1.2.1" = { name = "extend"; packageName = "extend"; @@ -11769,13 +12993,13 @@ let sha512 = "Nmb6QXkELsuBr24CJSkilo6UHHgbekK5UiZgfE6UHD3Eb27YC6oD+bhcT+tJ6cl8dmsgdQxnWlcry8ksBIBLpw=="; }; }; - "extract-files-3.1.0" = { + "extract-files-4.1.0" = { name = "extract-files"; packageName = "extract-files"; - version = "3.1.0"; + version = "4.1.0"; src = fetchurl { - url = "https://registry.npmjs.org/extract-files/-/extract-files-3.1.0.tgz"; - sha512 = "urkJPM4N88CMy1AfDw+Avudon6fToTsaG5j5VN0aybn88udv1yrERFCweV78NaZg7DOFsQULkFgvP64vNQFNMQ=="; + url = "https://registry.npmjs.org/extract-files/-/extract-files-4.1.0.tgz"; + sha512 = "2gjdb3dVzr1ie9+K8pupPTnsNkK4qmzbTFOIxghiWoh6nCTajGCGC72ZNYX0nBWy5IOq1FXfRVgvkkLqqE4sdw=="; }; }; "extract-opts-3.3.1" = { @@ -11891,7 +13115,7 @@ let packageName = "fast-deep-equal"; version = "1.1.0"; src = fetchurl { - url = "https://registry.npmjs.org/fast-deep-equal/-/fast-deep-equal-1.1.0.tgz"; + url = "http://registry.npmjs.org/fast-deep-equal/-/fast-deep-equal-1.1.0.tgz"; sha1 = "c053477817c86b51daa853c81e059b733d023614"; }; }; @@ -12021,15 +13245,6 @@ let sha1 = "f0efe18c4f56e4f40afc7e06c719fd5ee6188f38"; }; }; - "fclone-1.0.11" = { - name = "fclone"; - packageName = "fclone"; - version = "1.0.11"; - src = fetchurl { - url = "https://registry.npmjs.org/fclone/-/fclone-1.0.11.tgz"; - sha1 = "10e85da38bfea7fc599341c296ee1d77266ee640"; - }; - }; "fd-read-stream-1.1.0" = { name = "fd-read-stream"; packageName = "fd-read-stream"; @@ -12062,7 +13277,7 @@ let packageName = "fecha"; version = "2.3.3"; src = fetchurl { - url = "https://registry.npmjs.org/fecha/-/fecha-2.3.3.tgz"; + url = "http://registry.npmjs.org/fecha/-/fecha-2.3.3.tgz"; sha512 = "lUGBnIamTAwk4znq5BcqsDaxSmZ9nDVJaij6NvRt/Tg4R69gERA+otPKbS86ROw9nxVMw2/mp1fnaiWqbs6Sdg=="; }; }; @@ -12080,7 +13295,7 @@ let packageName = "fibers"; version = "1.0.15"; src = fetchurl { - url = "https://registry.npmjs.org/fibers/-/fibers-1.0.15.tgz"; + url = "http://registry.npmjs.org/fibers/-/fibers-1.0.15.tgz"; sha1 = "22f039c8f18b856190fbbe4decf056154c1eae9c"; }; }; @@ -12147,6 +13362,15 @@ let sha1 = "257a078384d1db8087bc449d107d52a52672b9e9"; }; }; + "file-type-4.4.0" = { + name = "file-type"; + packageName = "file-type"; + version = "4.4.0"; + src = fetchurl { + url = "https://registry.npmjs.org/file-type/-/file-type-4.4.0.tgz"; + sha1 = "1b600e5fca1fbdc6e80c0a70c71c8dba5f7906c5"; + }; + }; "file-type-5.2.0" = { name = "file-type"; packageName = "file-type"; @@ -12165,6 +13389,15 @@ let sha512 = "YPcTBDV+2Tm0VqjybVd32MHdlEGAtuxS3VAYsumFokDSMG+ROT5wawGlnHDoz7bfMcMDt9hxuXvXwoKUx2fkOg=="; }; }; + "file-type-8.1.0" = { + name = "file-type"; + packageName = "file-type"; + version = "8.1.0"; + src = fetchurl { + url = "https://registry.npmjs.org/file-type/-/file-type-8.1.0.tgz"; + sha512 = "qyQ0pzAy78gVoJsmYeNgl8uH8yKhr1lVhW7JbzJmnlRi0I4R2eEDEJZVKG8agpDnLpacwNbDhLNG/LMdxHD2YQ=="; + }; + }; "file-uri-to-path-1.0.0" = { name = "file-uri-to-path"; packageName = "file-uri-to-path"; @@ -12273,15 +13506,6 @@ let sha1 = "2c400d8d4530935bc232549c5fa385ec07de6fcd"; }; }; - "finalhandler-1.0.6" = { - name = "finalhandler"; - packageName = "finalhandler"; - version = "1.0.6"; - src = fetchurl { - url = "https://registry.npmjs.org/finalhandler/-/finalhandler-1.0.6.tgz"; - sha1 = "007aea33d1a4d3e42017f624848ad58d212f814f"; - }; - }; "finalhandler-1.1.0" = { name = "finalhandler"; packageName = "finalhandler"; @@ -12377,7 +13601,7 @@ let packageName = "find-versions"; version = "2.0.0"; src = fetchurl { - url = "https://registry.npmjs.org/find-versions/-/find-versions-2.0.0.tgz"; + url = "http://registry.npmjs.org/find-versions/-/find-versions-2.0.0.tgz"; sha1 = "2ad90d490f6828c1aa40292cf709ac3318210c3c"; }; }; @@ -12462,6 +13686,15 @@ let sha1 = "b88673c42009f8821fac2926e99720acee924fae"; }; }; + "fkill-5.3.0" = { + name = "fkill"; + packageName = "fkill"; + version = "5.3.0"; + src = fetchurl { + url = "https://registry.npmjs.org/fkill/-/fkill-5.3.0.tgz"; + sha512 = "AHe4x/k9xHlSNPRya0FOCd42qa6ggmW4gtdy6mR0R1vdWtNq9zMd8nmMR5LB7fTNOA1f1nOU+uqaQHP7NMWmVA=="; + }; + }; "flagged-respawn-1.0.0" = { name = "flagged-respawn"; packageName = "flagged-respawn"; @@ -12471,13 +13704,13 @@ let sha1 = "4e79ae9b2eb38bf86b3bb56bf3e0a56aa5fcabd7"; }; }; - "flat-cache-1.3.0" = { + "flat-cache-1.3.2" = { name = "flat-cache"; packageName = "flat-cache"; - version = "1.3.0"; + version = "1.3.2"; src = fetchurl { - url = "https://registry.npmjs.org/flat-cache/-/flat-cache-1.3.0.tgz"; - sha1 = "d3030b32b38154f4e3b7e9c709f490f7ef97c481"; + url = "https://registry.npmjs.org/flat-cache/-/flat-cache-1.3.2.tgz"; + sha512 = "KByBY8c98sLUAGpnmjEdWTrtrLZRtZdwds+kAL/ciFXTCb7AZgqKsAnVnYFQj1hxepwO8JKN/8AsRWwLq+RK0A=="; }; }; "flat-tree-1.6.0" = { @@ -12534,6 +13767,15 @@ let sha1 = "dae46a9d78fbe25292258cc1e780a41d95c03782"; }; }; + "flow-bin-0.85.0" = { + name = "flow-bin"; + packageName = "flow-bin"; + version = "0.85.0"; + src = fetchurl { + url = "https://registry.npmjs.org/flow-bin/-/flow-bin-0.85.0.tgz"; + sha512 = "ougBA2q6Rn9sZrjZQ9r5pTFxCotlGouySpD2yRIuq5AYwwfIT8HHhVMeSwrN5qJayjHINLJyrnsSkkPCZyfMrQ=="; + }; + }; "fluent-ffmpeg-2.1.2" = { name = "fluent-ffmpeg"; packageName = "fluent-ffmpeg"; @@ -12561,22 +13803,13 @@ let sha1 = "36ce06abe2e0e01c44dd69f2a165305a2320649b"; }; }; - "flumecodec-0.0.1" = { - name = "flumecodec"; - packageName = "flumecodec"; - version = "0.0.1"; - src = fetchurl { - url = "https://registry.npmjs.org/flumecodec/-/flumecodec-0.0.1.tgz"; - sha1 = "ae049a714386bb83e342657a82924b70364a90d6"; - }; - }; - "flumedb-0.5.1" = { + "flumedb-1.0.1" = { name = "flumedb"; packageName = "flumedb"; - version = "0.5.1"; + version = "1.0.1"; src = fetchurl { - url = "https://registry.npmjs.org/flumedb/-/flumedb-0.5.1.tgz"; - sha512 = "WB/q5YYEvVB2ozp7xhp3ur5NfX03HZywx6EEV6AlKjd1PodZdHVspz3NpakV++mVB89CRoH2nq+WdY33ntbfQw=="; + url = "https://registry.npmjs.org/flumedb/-/flumedb-1.0.1.tgz"; + sha512 = "mT0v0dY9EkWRGwDtTfavYNv2Z6nrMNlVZCNJD7qxjfPJymfv8kNYB4UvDdBHleHegvzjufjnE73IkRG5DgMjww=="; }; }; "flumelog-offset-3.3.2" = { @@ -12755,7 +13988,7 @@ let packageName = "form-data"; version = "0.0.10"; src = fetchurl { - url = "https://registry.npmjs.org/form-data/-/form-data-0.0.10.tgz"; + url = "http://registry.npmjs.org/form-data/-/form-data-0.0.10.tgz"; sha1 = "db345a5378d86aeeb1ed5d553b869ac192d2f5ed"; }; }; @@ -12764,7 +13997,7 @@ let packageName = "form-data"; version = "0.1.3"; src = fetchurl { - url = "https://registry.npmjs.org/form-data/-/form-data-0.1.3.tgz"; + url = "http://registry.npmjs.org/form-data/-/form-data-0.1.3.tgz"; sha1 = "4ee4346e6eb5362e8344a02075bd8dbd8c7373ea"; }; }; @@ -12773,7 +14006,7 @@ let packageName = "form-data"; version = "1.0.0-rc3"; src = fetchurl { - url = "https://registry.npmjs.org/form-data/-/form-data-1.0.0-rc3.tgz"; + url = "http://registry.npmjs.org/form-data/-/form-data-1.0.0-rc3.tgz"; sha1 = "d35bc62e7fbc2937ae78f948aaa0d38d90607577"; }; }; @@ -12782,7 +14015,7 @@ let packageName = "form-data"; version = "1.0.1"; src = fetchurl { - url = "https://registry.npmjs.org/form-data/-/form-data-1.0.1.tgz"; + url = "http://registry.npmjs.org/form-data/-/form-data-1.0.1.tgz"; sha1 = "ae315db9a4907fa065502304a66d7733475ee37c"; }; }; @@ -12795,13 +14028,13 @@ let sha1 = "33c183acf193276ecaa98143a69e94bfee1750d1"; }; }; - "form-data-2.3.2" = { + "form-data-2.3.3" = { name = "form-data"; packageName = "form-data"; - version = "2.3.2"; + version = "2.3.3"; src = fetchurl { - url = "https://registry.npmjs.org/form-data/-/form-data-2.3.2.tgz"; - sha1 = "4970498be604c20c005d4f5c23aecd21d6b49099"; + url = "https://registry.npmjs.org/form-data/-/form-data-2.3.3.tgz"; + sha512 = "1lLKB2Mu3aGP1Q/2eCOx0fNbRMe7XdwktwOruhfqqd0rIJWwN4Dh+E3hrPSlDCXnSR7UtZ1N38rVXm+6+MEhJQ=="; }; }; "format-util-1.0.3" = { @@ -12989,7 +14222,7 @@ let packageName = "fs-extra"; version = "0.24.0"; src = fetchurl { - url = "https://registry.npmjs.org/fs-extra/-/fs-extra-0.24.0.tgz"; + url = "http://registry.npmjs.org/fs-extra/-/fs-extra-0.24.0.tgz"; sha1 = "d4e4342a96675cb7846633a6099249332b539952"; }; }; @@ -12998,7 +14231,7 @@ let packageName = "fs-extra"; version = "0.26.7"; src = fetchurl { - url = "https://registry.npmjs.org/fs-extra/-/fs-extra-0.26.7.tgz"; + url = "http://registry.npmjs.org/fs-extra/-/fs-extra-0.26.7.tgz"; sha1 = "9ae1fdd94897798edab76d0918cf42d0c3184fa9"; }; }; @@ -13007,7 +14240,7 @@ let packageName = "fs-extra"; version = "0.30.0"; src = fetchurl { - url = "https://registry.npmjs.org/fs-extra/-/fs-extra-0.30.0.tgz"; + url = "http://registry.npmjs.org/fs-extra/-/fs-extra-0.30.0.tgz"; sha1 = "f233ffcc08d4da7d432daa449776989db1df93f0"; }; }; @@ -13016,7 +14249,7 @@ let packageName = "fs-extra"; version = "0.6.4"; src = fetchurl { - url = "https://registry.npmjs.org/fs-extra/-/fs-extra-0.6.4.tgz"; + url = "http://registry.npmjs.org/fs-extra/-/fs-extra-0.6.4.tgz"; sha1 = "f46f0c75b7841f8d200b3348cd4d691d5a099d15"; }; }; @@ -13025,7 +14258,7 @@ let packageName = "fs-extra"; version = "1.0.0"; src = fetchurl { - url = "https://registry.npmjs.org/fs-extra/-/fs-extra-1.0.0.tgz"; + url = "http://registry.npmjs.org/fs-extra/-/fs-extra-1.0.0.tgz"; sha1 = "cd3ce5f7e7cb6145883fcae3191e9877f8587950"; }; }; @@ -13065,13 +14298,13 @@ let sha512 = "GnyIkKhhzXZUWFCaJzvyDLEEgDkPfb4/TPvJCJVuS8MWZgoSsErf++QpiAlDnKFcqhRlm+tIOcencCjyJE6ZCA=="; }; }; - "fs-extra-7.0.0" = { + "fs-extra-7.0.1" = { name = "fs-extra"; packageName = "fs-extra"; - version = "7.0.0"; + version = "7.0.1"; src = fetchurl { - url = "https://registry.npmjs.org/fs-extra/-/fs-extra-7.0.0.tgz"; - sha512 = "EglNDLRpmaTWiD/qraZn6HREAEAHJcJOmxNEYwq6xeMKnVMAy3GUcFB+wXt2C6k4CNvB/mP1y/U3dzvKKj5OtQ=="; + url = "https://registry.npmjs.org/fs-extra/-/fs-extra-7.0.1.tgz"; + sha512 = "YJDaCJZEnBmcbw13fvdAM9AwNOJwOzrE4pqMqBq5nFiEqXUqHwlK4B+3pUw6JNvfSPtX05xFHtYy/1ni01eGCw=="; }; }; "fs-minipass-1.2.5" = { @@ -13290,6 +14523,15 @@ let sha1 = "336a98f81510f9ae0af2a494e17468a116a9dc04"; }; }; + "generate-function-1.1.0" = { + name = "generate-function"; + packageName = "generate-function"; + version = "1.1.0"; + src = fetchurl { + url = "http://registry.npmjs.org/generate-function/-/generate-function-1.1.0.tgz"; + sha1 = "54c21b080192b16d9877779c5bb81666e772365f"; + }; + }; "generate-function-2.3.1" = { name = "generate-function"; packageName = "generate-function"; @@ -13317,13 +14559,13 @@ let sha1 = "8b465c1a7588ea9dd2bb133bda0bb66bfef8a63e"; }; }; - "genfun-4.0.1" = { + "genfun-5.0.0" = { name = "genfun"; packageName = "genfun"; - version = "4.0.1"; + version = "5.0.0"; src = fetchurl { - url = "https://registry.npmjs.org/genfun/-/genfun-4.0.1.tgz"; - sha1 = "ed10041f2e4a7f1b0a38466d17a5c3e27df1dfc1"; + url = "https://registry.npmjs.org/genfun/-/genfun-5.0.0.tgz"; + sha512 = "KGDOARWVga7+rnB3z9Sd2Letx515owfk0hSxHGuqjANb1M+x2bGZGqHLiozPsYMdM2OubeMni/Hpwmjq6qIUhA=="; }; }; "get-assigned-identifiers-1.2.0" = { @@ -13493,7 +14735,7 @@ let packageName = "gettext-parser"; version = "1.1.0"; src = fetchurl { - url = "https://registry.npmjs.org/gettext-parser/-/gettext-parser-1.1.0.tgz"; + url = "http://registry.npmjs.org/gettext-parser/-/gettext-parser-1.1.0.tgz"; sha1 = "2c5a6638d893934b9b55037d0ad82cb7004b2679"; }; }; @@ -13529,7 +14771,7 @@ let packageName = "git-raw-commits"; version = "1.3.6"; src = fetchurl { - url = "https://registry.npmjs.org/git-raw-commits/-/git-raw-commits-1.3.6.tgz"; + url = "http://registry.npmjs.org/git-raw-commits/-/git-raw-commits-1.3.6.tgz"; sha512 = "svsK26tQ8vEKnMshTDatSIQSMDdz8CxIIqKsvPqbtV23Etmw6VNaFAitu8zwZ0VrOne7FztwPyRLxK7/DIUTQg=="; }; }; @@ -13569,13 +14811,13 @@ let sha1 = "a0c2e3dd392abcf6b76962e27fc75fb3223449ce"; }; }; - "git-semver-tags-2.0.0" = { + "git-semver-tags-2.0.2" = { name = "git-semver-tags"; packageName = "git-semver-tags"; - version = "2.0.0"; + version = "2.0.2"; src = fetchurl { - url = "https://registry.npmjs.org/git-semver-tags/-/git-semver-tags-2.0.0.tgz"; - sha512 = "lSgFc3zQTul31nFje2Q8XdNcTOI6B4I3mJRPCgFzHQQLfxfqdWTYzdtCaynkK5Xmb2wQlSJoKolhXJ1VhKROnQ=="; + url = "https://registry.npmjs.org/git-semver-tags/-/git-semver-tags-2.0.2.tgz"; + sha512 = "34lMF7Yo1xEmsK2EkbArdoU79umpvm0MfzaDkSNYSJqtM5QLAVTPWgpiXSVI5o/O9EvZPSrP4Zvnec/CqhSd5w=="; }; }; "git-ssb-web-2.8.0" = { @@ -13822,6 +15064,15 @@ let sha512 = "sKzpEkf11GpOFuw0Zzjzmt4B4UZwjOcG757PPvrfhxcLFbq0wpsgpOqxpxtxFiCG4DtG93M6XRVbF2oGdev7bg=="; }; }; + "global-modules-path-2.3.0" = { + name = "global-modules-path"; + packageName = "global-modules-path"; + version = "2.3.0"; + src = fetchurl { + url = "https://registry.npmjs.org/global-modules-path/-/global-modules-path-2.3.0.tgz"; + sha512 = "HchvMJNYh9dGSCy8pOQ2O8u/hoXaL+0XhnrwH0RyLiSXMMTl9W3N6KUU73+JFOg5PGjtzl6VZzUQsnrpm7Szag=="; + }; + }; "global-paths-1.0.0" = { name = "global-paths"; packageName = "global-paths"; @@ -13885,13 +15136,13 @@ let sha1 = "080f54549ec1b82a6c60e631fc82e1211dbe95f8"; }; }; - "globby-5.0.0" = { + "globby-6.1.0" = { name = "globby"; packageName = "globby"; - version = "5.0.0"; + version = "6.1.0"; src = fetchurl { - url = "https://registry.npmjs.org/globby/-/globby-5.0.0.tgz"; - sha1 = "ebd84667ca0dbb330b99bcfc68eac2bc54370e0d"; + url = "https://registry.npmjs.org/globby/-/globby-6.1.0.tgz"; + sha1 = "f5a6d70e8395e21c858fb0489d64df02424d506c"; }; }; "globby-8.0.1" = { @@ -13930,6 +15181,15 @@ let sha1 = "d53b30cdf9313dffb7dc9a0d477096aa6d145c50"; }; }; + "google-closure-compiler-js-20170910.0.1" = { + name = "google-closure-compiler-js"; + packageName = "google-closure-compiler-js"; + version = "20170910.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/google-closure-compiler-js/-/google-closure-compiler-js-20170910.0.1.tgz"; + sha512 = "Vric7QFWxzHFxITZ10bmlG1H/5rhODb7hJuWyKWMD8GflpQzRmbMVqkFp3fKvN+U9tPwZItGVhkiOR+84PX3ew=="; + }; + }; "got-1.2.2" = { name = "got"; packageName = "got"; @@ -13966,12 +15226,21 @@ let sha512 = "qjUJ5U/hawxosMryILofZCkm3C84PLJS/0grRIpjAwu+Lkxxj5cxeCU25BG0/3mDSpXKTyZr8oh8wIgLaH0QCw=="; }; }; + "got-9.3.2" = { + name = "got"; + packageName = "got"; + version = "9.3.2"; + src = fetchurl { + url = "https://registry.npmjs.org/got/-/got-9.3.2.tgz"; + sha512 = "OyKOUg71IKvwb8Uj0KP6EN3+qVVvXmYsFznU1fnwUnKtDbZnwSlAi7muNlu4HhBfN9dImtlgg9e7H0g5qVdaeQ=="; + }; + }; "graceful-fs-1.2.3" = { name = "graceful-fs"; packageName = "graceful-fs"; version = "1.2.3"; src = fetchurl { - url = "https://registry.npmjs.org/graceful-fs/-/graceful-fs-1.2.3.tgz"; + url = "http://registry.npmjs.org/graceful-fs/-/graceful-fs-1.2.3.tgz"; sha1 = "15a4806a57547cb2d2dbf27f42e89a8c3451b364"; }; }; @@ -13980,7 +15249,7 @@ let packageName = "graceful-fs"; version = "2.0.3"; src = fetchurl { - url = "https://registry.npmjs.org/graceful-fs/-/graceful-fs-2.0.3.tgz"; + url = "http://registry.npmjs.org/graceful-fs/-/graceful-fs-2.0.3.tgz"; sha1 = "7cd2cdb228a4a3f36e95efa6cc142de7d1a136d0"; }; }; @@ -13989,7 +15258,7 @@ let packageName = "graceful-fs"; version = "3.0.11"; src = fetchurl { - url = "https://registry.npmjs.org/graceful-fs/-/graceful-fs-3.0.11.tgz"; + url = "http://registry.npmjs.org/graceful-fs/-/graceful-fs-3.0.11.tgz"; sha1 = "7613c778a1afea62f25c630a086d7f3acbbdd818"; }; }; @@ -13998,10 +15267,19 @@ let packageName = "graceful-fs"; version = "4.1.11"; src = fetchurl { - url = "https://registry.npmjs.org/graceful-fs/-/graceful-fs-4.1.11.tgz"; + url = "http://registry.npmjs.org/graceful-fs/-/graceful-fs-4.1.11.tgz"; sha1 = "0e8bdfe4d1ddb8854d64e04ea7c00e2a026e5658"; }; }; + "graceful-fs-4.1.15" = { + name = "graceful-fs"; + packageName = "graceful-fs"; + version = "4.1.15"; + src = fetchurl { + url = "https://registry.npmjs.org/graceful-fs/-/graceful-fs-4.1.15.tgz"; + sha512 = "6uHUhOPEBgQ24HM+r6b/QwWfZq+yiFcipKFrOFiBEnWdy5sdzYoi+pJeQaPI5qOLRFqWmAXUPQNsielzdLoecA=="; + }; + }; "graceful-readlink-1.0.1" = { name = "graceful-readlink"; packageName = "graceful-readlink"; @@ -14056,13 +15334,22 @@ let sha512 = "QZ5BL8ZO/B20VA8APauGBg3GyEgZ19eduvpLWoq5x7gMmWnHoy8rlQWPLmWgFvo1yNgjSEFMesmS4R6pPr7xog=="; }; }; - "graphql-anywhere-4.1.19" = { + "graphql-14.0.2" = { + name = "graphql"; + packageName = "graphql"; + version = "14.0.2"; + src = fetchurl { + url = "https://registry.npmjs.org/graphql/-/graphql-14.0.2.tgz"; + sha512 = "gUC4YYsaiSJT1h40krG3J+USGlwhzNTXSb4IOZljn9ag5Tj+RkoXrWp+Kh7WyE3t1NCfab5kzCuxBIvOMERMXw=="; + }; + }; + "graphql-anywhere-4.1.22" = { name = "graphql-anywhere"; packageName = "graphql-anywhere"; - version = "4.1.19"; + version = "4.1.22"; src = fetchurl { - url = "https://registry.npmjs.org/graphql-anywhere/-/graphql-anywhere-4.1.19.tgz"; - sha512 = "mQlvbECzYPBcgBC9JsdM4v+DSvNmcIP+8Vwr+ij3gktbaLSE0Iza30mztuz40Jlf7ooMs+0emBZucNjLzqz7tA=="; + url = "https://registry.npmjs.org/graphql-anywhere/-/graphql-anywhere-4.1.22.tgz"; + sha512 = "qm2/1cKM8nfotxDhm4J0r1znVlK0Yge/yEKt26EVVBgpIhvxjXYFALCGbr7cvfDlvzal1iSPpaYa+8YTtjsxQA=="; }; }; "graphql-cli-prepare-1.4.19" = { @@ -14083,58 +15370,40 @@ let sha512 = "BOtbEOn/fD13jT0peCy3Fzp1DSTsA/1AcZp266AQ5Sk3wFndKCEa/H7donbu5UriOw1V/N1WDirYPnr7rd8E7Q=="; }; }; - "graphql-config-2.0.0" = { - name = "graphql-config"; - packageName = "graphql-config"; - version = "2.0.0"; - src = fetchurl { - url = "http://registry.npmjs.org/graphql-config/-/graphql-config-2.0.0.tgz"; - sha512 = "//hZmROEk79zzPlH6SVTQeXd8NVV65rquz1zxZeO6oEuX5KNnii8+oznLu7d897EfJ+NShTZtsY9FMmxxkWmJw=="; - }; - }; - "graphql-config-2.0.1" = { + "graphql-config-2.2.1" = { name = "graphql-config"; packageName = "graphql-config"; - version = "2.0.1"; + version = "2.2.1"; src = fetchurl { - url = "http://registry.npmjs.org/graphql-config/-/graphql-config-2.0.1.tgz"; - sha512 = "eb4FzlODifHE/Q+91QptAmkGw39wL5ToinJ2556UUsGt2drPc4tzifL+HSnHSaxiIbH8EUhc/Fa6+neinF04qA=="; + url = "https://registry.npmjs.org/graphql-config/-/graphql-config-2.2.1.tgz"; + sha512 = "U8+1IAhw9m6WkZRRcyj8ZarK96R6lQBQ0an4lp76Ps9FyhOXENC5YQOxOFGm5CxPrX2rD0g3Je4zG5xdNJjwzQ=="; }; }; - "graphql-config-extension-graphcool-1.0.8" = { + "graphql-config-extension-graphcool-1.0.11" = { name = "graphql-config-extension-graphcool"; packageName = "graphql-config-extension-graphcool"; - version = "1.0.8"; - src = fetchurl { - url = "http://registry.npmjs.org/graphql-config-extension-graphcool/-/graphql-config-extension-graphcool-1.0.8.tgz"; - sha512 = "eMvL/RAo88EHo8SmP40Zcsrx7nrLTE82G4ZochsHYoEvP+QMo0XA+Vq9lxYeRTJEtGMFD4imjHXGHWh4B0srQw=="; - }; - }; - "graphql-config-extension-openapi-1.0.6" = { - name = "graphql-config-extension-openapi"; - packageName = "graphql-config-extension-openapi"; - version = "1.0.6"; + version = "1.0.11"; src = fetchurl { - url = "https://registry.npmjs.org/graphql-config-extension-openapi/-/graphql-config-extension-openapi-1.0.6.tgz"; - sha512 = "Do6tHyQyxaPhaZdJ+ZCpYbVhczlqNqMVuO46aG/YkMuRQPoj/FRmeH9BFXniFkz60TZyRpLTQNel2sllMekRLQ=="; + url = "https://registry.npmjs.org/graphql-config-extension-graphcool/-/graphql-config-extension-graphcool-1.0.11.tgz"; + sha512 = "uNhyMqj30M4KLkD/gGEEr6cPuVX/jtm0C9O5Bj9V2jFhN5IdHXWJx+fC/p/xxh82iOuR8uibKNCXzwA7R6F6IA=="; }; }; - "graphql-config-extension-prisma-0.2.1" = { + "graphql-config-extension-prisma-0.2.5" = { name = "graphql-config-extension-prisma"; packageName = "graphql-config-extension-prisma"; - version = "0.2.1"; + version = "0.2.5"; src = fetchurl { - url = "https://registry.npmjs.org/graphql-config-extension-prisma/-/graphql-config-extension-prisma-0.2.1.tgz"; - sha512 = "OIqa5hjX3bqHR5x2uPE5ssdaI6DEr/P/+utAaqdM6ZEAi8vgupye4AT5AOyDzwK5iDmbJAkShgwQlHiAm4Srvg=="; + url = "https://registry.npmjs.org/graphql-config-extension-prisma/-/graphql-config-extension-prisma-0.2.5.tgz"; + sha512 = "7Qh3TzZS3hwZpJbTNfTHXBM6UbzV7DMik9Mc95Rz76yTAs7Wr83xBFsH4Ap1NWlqBgANfO3cLLI4YomDJmO5SA=="; }; }; - "graphql-extensions-0.2.1" = { + "graphql-extensions-0.3.0" = { name = "graphql-extensions"; packageName = "graphql-extensions"; - version = "0.2.1"; + version = "0.3.0"; src = fetchurl { - url = "https://registry.npmjs.org/graphql-extensions/-/graphql-extensions-0.2.1.tgz"; - sha512 = "/1FTPSWSffDjlRyMAV2UwQhojLmca9aQD0ieo1IYiqT5SE+uOWi4r83QF1CoER0sREIsH3s+nTmdH3cvQVG3MA=="; + url = "https://registry.npmjs.org/graphql-extensions/-/graphql-extensions-0.3.0.tgz"; + sha512 = 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url = "https://registry.npmjs.org/graphql-playground-html/-/graphql-playground-html-1.6.4.tgz"; + sha512 = "mnpAVYSR3TesYsJ5OLJVJMA0muTCw4npsCI1cKMtW35lbA6KljZkLkz3ZWXhEIYPnHKIeUHEtbn1ZGkEXtAxLg=="; }; }; - "graphql-playground-middleware-express-1.6.2" = { + "graphql-playground-middleware-express-1.7.6" = { name = "graphql-playground-middleware-express"; packageName = "graphql-playground-middleware-express"; - version = "1.6.2"; + version = "1.7.6"; src = fetchurl { - url = "https://registry.npmjs.org/graphql-playground-middleware-express/-/graphql-playground-middleware-express-1.6.2.tgz"; - sha512 = "BHaEZe2J2lQ1TX2W73a6PI2zVjB9Nb0J9pFdbG1L7ugYdbait/elDrsNMxLCsDHVOGJF009VlYszrk7Cq7FiTg=="; + url = "https://registry.npmjs.org/graphql-playground-middleware-express/-/graphql-playground-middleware-express-1.7.6.tgz"; + sha512 = "fICPxYGIdhCxtFlwCnP3uZ2uRWeQ9wj7OkcWUiHNwaFma2TbRD5nNKaPA2u21YWha9xv26qIDxxcdW27F/lcbQ=="; }; }; "graphql-request-1.8.2" = { @@ -14191,15 +15469,6 @@ let sha512 = "C8+EqwNCiQxUhbrWEokxN16oINAkhIDBzEpKHXeatBRaAyMczXm0J6HMaMSKOuQmk7P1PbDHIVW3FVZwXF2WJQ=="; }; }; - "graphql-subscriptions-0.5.8" = { - name = "graphql-subscriptions"; - packageName = "graphql-subscriptions"; - version = "0.5.8"; - src = fetchurl { - url = "http://registry.npmjs.org/graphql-subscriptions/-/graphql-subscriptions-0.5.8.tgz"; - sha512 = "0CaZnXKBw2pwnIbvmVckby5Ge5e2ecmjofhYCdyeACbCly2j3WXDP/pl+s+Dqd2GQFC7y99NB+53jrt55CKxYQ=="; - }; - }; "graphql-subscriptions-1.0.0" = { name = "graphql-subscriptions"; packageName = "graphql-subscriptions"; @@ -14218,13 +15487,13 @@ let sha512 = "9FD6cw976TLLf9WYIUPCaaTpniawIjHWZSwIRZSjrfufJamcXbVVYfN2TWvJYbw0Xf2JjYbl1/f2+wDnBVw3/w=="; }; }; - "graphql-tools-3.1.1" = { + "graphql-tools-4.0.3" = { name = "graphql-tools"; packageName = "graphql-tools"; - version = "3.1.1"; + version = "4.0.3"; src = fetchurl { - url = "https://registry.npmjs.org/graphql-tools/-/graphql-tools-3.1.1.tgz"; - sha512 = "yHvPkweUB0+Q/GWH5wIG60bpt8CTwBklCSzQdEHmRUgAdEQKxw+9B7zB3dG7wB3Ym7M7lfrS4Ej+jtDZfA2UXg=="; + url = "https://registry.npmjs.org/graphql-tools/-/graphql-tools-4.0.3.tgz"; + sha512 = "NNZM0WSnVLX1zIMUxu7SjzLZ4prCp15N5L2T2ro02OVyydZ0fuCnZYRnx/yK9xjGWbZA0Q58yEO//Bv/psJWrg=="; }; }; "graphql-type-json-0.2.1" = { @@ -14236,15 +15505,6 @@ let sha1 = "d2c177e2f1b17d87f81072cd05311c0754baa420"; }; }; - "graphreduce-3.0.4" = { - name = "graphreduce"; - packageName = "graphreduce"; - version = "3.0.4"; - src = fetchurl { - url = "https://registry.npmjs.org/graphreduce/-/graphreduce-3.0.4.tgz"; - sha1 = "bf442d0a878e83901e5ef3e652d23ffb5b831ed7"; - }; - }; "gray-matter-2.1.1" = { name = "gray-matter"; packageName = "gray-matter"; @@ -14412,7 +15672,7 @@ let packageName = "har-validator"; version = "2.0.6"; src = fetchurl { - url = "https://registry.npmjs.org/har-validator/-/har-validator-2.0.6.tgz"; + url = "http://registry.npmjs.org/har-validator/-/har-validator-2.0.6.tgz"; sha1 = "cdcbc08188265ad119b6a5a7c8ab70eecfb5d27d"; }; }; @@ -14754,7 +16014,7 @@ let packageName = "hawk"; version = "0.10.2"; src = fetchurl { - url = "https://registry.npmjs.org/hawk/-/hawk-0.10.2.tgz"; + url = "http://registry.npmjs.org/hawk/-/hawk-0.10.2.tgz"; sha1 = "9b361dee95a931640e6d504e05609a8fc3ac45d2"; }; }; @@ -14763,7 +16023,7 @@ let packageName = "hawk"; version = "3.1.3"; src = fetchurl { - url = "https://registry.npmjs.org/hawk/-/hawk-3.1.3.tgz"; + url = "http://registry.npmjs.org/hawk/-/hawk-3.1.3.tgz"; sha1 = "078444bd7c1640b0fe540d2c9b73d59678e8e1c4"; }; }; @@ -14848,13 +16108,13 @@ let sha1 = "b8a9c5493212a9392f0222b649c9611497ebfb88"; }; }; - "highlight.js-9.13.0" = { + "highlight.js-9.13.1" = { name = "highlight.js"; packageName = "highlight.js"; - version = "9.13.0"; + version = "9.13.1"; src = fetchurl { - url = "https://registry.npmjs.org/highlight.js/-/highlight.js-9.13.0.tgz"; - sha512 = "2B90kcNnErqRTmzdZw6IPLEC9CdsiIMhj+r8L3LJKRCgtEJ+LY5yzWuQCVnADTI0wwocQinFzaaL/JjTQNqI/g=="; + url = "https://registry.npmjs.org/highlight.js/-/highlight.js-9.13.1.tgz"; + sha512 = "Sc28JNQNDzaH6PORtRLMvif9RSn1mYuOoX3omVjnb0+HbpPygU2ALBI0R/wsiqCb4/fcp07Gdo8g+fhtFrQl6A=="; }; }; "hiredis-0.4.1" = { @@ -14880,7 +16140,7 @@ let packageName = "hoek"; version = "0.7.6"; src = fetchurl { - url = "https://registry.npmjs.org/hoek/-/hoek-0.7.6.tgz"; + url = "http://registry.npmjs.org/hoek/-/hoek-0.7.6.tgz"; sha1 = "60fbd904557541cd2b8795abf308a1b3770e155a"; }; }; @@ -14889,7 +16149,7 @@ let packageName = "hoek"; version = "2.16.3"; src = fetchurl { - url = "https://registry.npmjs.org/hoek/-/hoek-2.16.3.tgz"; + url = "http://registry.npmjs.org/hoek/-/hoek-2.16.3.tgz"; sha1 = "20bb7403d3cea398e91dc4710a8ff1b8274a25ed"; }; }; @@ -14898,7 +16158,7 @@ let packageName = "hoek"; version = "4.2.1"; src = fetchurl { - url = "https://registry.npmjs.org/hoek/-/hoek-4.2.1.tgz"; + url = "http://registry.npmjs.org/hoek/-/hoek-4.2.1.tgz"; sha512 = "QLg82fGkfnJ/4iy1xZ81/9SIJiq1NGFUMGs6ParyjBZr6jW2Ufj/snDqTHixNlHdPNwN2RLVD0Pi3igeK9+JfA=="; }; }; @@ -14911,6 +16171,15 @@ let sha512 = "Alr4ZQgoMlnere5FZJsIyfIjORBqZll5POhDsF4q64dPuJR6rNxXdDxtHSQq8OXRurhmx+PWYEE8bXRROY8h0w=="; }; }; + "hoek-6.0.2" = { + name = "hoek"; + packageName = "hoek"; + version = "6.0.2"; + src = fetchurl { + url = "https://registry.npmjs.org/hoek/-/hoek-6.0.2.tgz"; + sha512 = "0RGPLkyxpsMJVj/iOCaJaIWFEch988eUicJJpRiQ+Or1CMvBXcoZPlSx9FhreDWw4hxMYy8xgTEdlsYQDTnxWA=="; + }; + }; "hogan.js-3.0.2" = { name = "hogan.js"; packageName = "hogan.js"; @@ -14929,6 +16198,15 @@ let sha1 = "e36c3f2d2cae7d746a857e38d18d5f32a7882db8"; }; }; + "home-or-tmp-3.0.0" = { + name = "home-or-tmp"; + packageName = "home-or-tmp"; + version = "3.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/home-or-tmp/-/home-or-tmp-3.0.0.tgz"; + sha1 = "57a8fe24cf33cdd524860a15821ddc25c86671fb"; + }; + }; "homedir-polyfill-1.0.1" = { name = "homedir-polyfill"; packageName = "homedir-polyfill"; @@ -14988,16 +16266,25 @@ let packageName = "htmlescape"; version = "1.1.1"; src = fetchurl { - url = "https://registry.npmjs.org/htmlescape/-/htmlescape-1.1.1.tgz"; + url = "http://registry.npmjs.org/htmlescape/-/htmlescape-1.1.1.tgz"; sha1 = "3a03edc2214bca3b66424a3e7959349509cb0351"; }; }; + "htmlparser2-3.10.0" = { + name = "htmlparser2"; + packageName = "htmlparser2"; + version = "3.10.0"; + src = fetchurl { + url = "https://registry.npmjs.org/htmlparser2/-/htmlparser2-3.10.0.tgz"; + sha512 = "J1nEUGv+MkXS0weHNWVKJJ+UrLfePxRWpN3C9bEi9fLxL2+ggW94DQvgYVXsaT30PGwYRIZKNZXuyMhp3Di4bQ=="; + }; + }; "htmlparser2-3.7.3" = { name = "htmlparser2"; packageName = "htmlparser2"; version = "3.7.3"; src = fetchurl { - url = "https://registry.npmjs.org/htmlparser2/-/htmlparser2-3.7.3.tgz"; + url = "http://registry.npmjs.org/htmlparser2/-/htmlparser2-3.7.3.tgz"; sha1 = "6a64c77637c08c6f30ec2a8157a53333be7cb05e"; }; }; @@ -15006,19 +16293,10 @@ let packageName = "htmlparser2"; version = "3.8.3"; src = fetchurl { - url = "https://registry.npmjs.org/htmlparser2/-/htmlparser2-3.8.3.tgz"; + url = "http://registry.npmjs.org/htmlparser2/-/htmlparser2-3.8.3.tgz"; sha1 = "996c28b191516a8be86501a7d79757e5c70c1068"; }; }; - "htmlparser2-3.9.2" = { - name = "htmlparser2"; - packageName = "htmlparser2"; - version = "3.9.2"; - src = fetchurl { - url = "https://registry.npmjs.org/htmlparser2/-/htmlparser2-3.9.2.tgz"; - sha1 = "1bdf87acca0f3f9e53fa4fcceb0f4b4cbb00b338"; - }; - }; "http-auth-2.0.7" = { name = "http-auth"; packageName = "http-auth"; @@ -15055,6 +16333,15 @@ let sha512 = "5ai2iksyV8ZXmnZhHH4rWPoxxistEexSi5936zIQ1bnNTW5VnA85B6P/VpXiRM017IgRvb2kKo1a//y+0wSp3w=="; }; }; + "http-cache-semantics-4.0.0" = { + name = "http-cache-semantics"; + packageName = "http-cache-semantics"; + version = "4.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/http-cache-semantics/-/http-cache-semantics-4.0.0.tgz"; + sha512 = "NtexGRtaV5z3ZUX78W9UDTOJPBdpqms6RmwQXmOhHws7CuQK3cqIoQtnmeqi1VvVD6u6eMMRL0sKE9BCZXTDWQ=="; + }; + }; "http-errors-1.3.1" = { name = "http-errors"; packageName = "http-errors"; @@ -15064,15 +16351,6 @@ let sha1 = "197e22cdebd4198585e8694ef6786197b91ed942"; }; }; - "http-errors-1.6.2" = { - name = "http-errors"; - packageName = "http-errors"; - version = "1.6.2"; - src = fetchurl { - url = "https://registry.npmjs.org/http-errors/-/http-errors-1.6.2.tgz"; - sha1 = "0a002cc85707192a7e7946ceedc11155f60ec736"; - }; - }; "http-errors-1.6.3" = { name = "http-errors"; packageName = "http-errors"; @@ -15109,13 +16387,13 @@ let sha1 = "29691b6fc58f4f7e81a3605dca82682b068e4430"; }; }; - "http-parser-js-0.4.13" = { + "http-parser-js-0.5.0" = { name = "http-parser-js"; packageName = "http-parser-js"; - version = "0.4.13"; + version = "0.5.0"; src = fetchurl { - url = "https://registry.npmjs.org/http-parser-js/-/http-parser-js-0.4.13.tgz"; - sha1 = "3bd6d6fde6e3172c9334c3b33b6c193d80fe1137"; + url = "https://registry.npmjs.org/http-parser-js/-/http-parser-js-0.5.0.tgz"; + sha512 = "cZdEF7r4gfRIq7ezX9J0T+kQmJNOub71dWbgAXVHDct80TKP4MCETtZQ31xyv38UwgzkWPYF/Xc0ge55dW9Z9w=="; }; }; "http-proxy-1.0.2" = { @@ -15123,7 +16401,7 @@ let packageName = "http-proxy"; version = "1.0.2"; src = fetchurl { - url = "https://registry.npmjs.org/http-proxy/-/http-proxy-1.0.2.tgz"; + url = "http://registry.npmjs.org/http-proxy/-/http-proxy-1.0.2.tgz"; sha1 = "08060ff2edb2189e57aa3a152d3ac63ed1af7254"; }; }; @@ -15258,7 +16536,7 @@ let packageName = "humanize-plus"; version = "1.8.2"; src = fetchurl { - url = "https://registry.npmjs.org/humanize-plus/-/humanize-plus-1.8.2.tgz"; + url = "http://registry.npmjs.org/humanize-plus/-/humanize-plus-1.8.2.tgz"; sha1 = "a65b34459ad6367adbb3707a82a3c9f916167030"; }; }; @@ -15271,13 +16549,13 @@ let sha512 = "PH5GBkXqFxw5+4eKaKRIkD23y6vRd/IXSl7IldyJxEXpDH9SEIXRORkBtkGni/ae2P7RVOw6Wxypd2tGXhha1w=="; }; }; - "hypercore-6.20.2" = { + "hypercore-6.21.0" = { name = "hypercore"; packageName = "hypercore"; - version = "6.20.2"; + version = "6.21.0"; src = fetchurl { - url = "https://registry.npmjs.org/hypercore/-/hypercore-6.20.2.tgz"; - sha512 = "VALfzDCqS0cIxoRvlQmCn4QYnQcUDCazyOQq3c0lbp1AvzEjaq62BvYDH28pmWeASokBszuysgsrPFTn704DbA=="; + url = "https://registry.npmjs.org/hypercore/-/hypercore-6.21.0.tgz"; + sha512 = "LPKI+nvgbFTKbXD1y6It3PUZDIQFHSYIeSDbqIZeIVuSoeI4PYcCehKdqB9Wls31AIZL7cFwA5o64uOtBxF1cA=="; }; }; "hypercore-crypto-1.0.0" = { @@ -15379,15 +16657,6 @@ let sha1 = "fe265a218ac6a57cfe854927e9d04c19825eddeb"; }; }; - "iconv-lite-0.4.19" = { - name = "iconv-lite"; - packageName = "iconv-lite"; - version = "0.4.19"; - src = fetchurl { - url = "https://registry.npmjs.org/iconv-lite/-/iconv-lite-0.4.19.tgz"; - sha512 = 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"immutable-tuple-0.4.9" = { name = "immutable-tuple"; packageName = "immutable-tuple"; - version = "0.4.8"; + version = "0.4.9"; + src = fetchurl { + url = "https://registry.npmjs.org/immutable-tuple/-/immutable-tuple-0.4.9.tgz"; + sha512 = "LWbJPZnidF8eczu7XmcnLBsumuyRBkpwIRPCZxlojouhBo5jEBO4toj6n7hMy6IxHU/c+MqDSWkvaTpPlMQcyA=="; + }; + }; + "import-fresh-2.0.0" = { + name = "import-fresh"; + packageName = "import-fresh"; + version = "2.0.0"; src = fetchurl { - url = "https://registry.npmjs.org/immutable-tuple/-/immutable-tuple-0.4.8.tgz"; - sha512 = "1m29EVSrF+LJJAyVo1v12NsIalVKjyi4HNQVQDBx+LNCIuRXnfeMCHuLao5CyN1m3Sn0T63U5JEkmPArPCipQA=="; + url = "https://registry.npmjs.org/import-fresh/-/import-fresh-2.0.0.tgz"; + sha1 = "d81355c15612d386c61f9ddd3922d4304822a546"; }; }; "import-global-0.1.0" = { @@ -15577,6 +16855,15 @@ let sha512 = "vAaZHieK9qjGo58agRBg+bhHX3hoTZU/Oa3GESWLz7t1U62fk63aHuDJJEteXoDeTCcPmUT+z38gkHPZkkmpmQ=="; }; }; + "import-local-2.0.0" = { + name = "import-local"; + packageName = "import-local"; + version = "2.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/import-local/-/import-local-2.0.0.tgz"; + sha512 = "b6s04m3O+s3CGSbqDIyP4R6aAwAeYlVq9+WUWep6iHa8ETRf9yei1U48C5MmfJmV9AiLYYBKPMq/W+/WRpQmCQ=="; + }; + }; "imurmurhash-0.1.4" = { name = "imurmurhash"; packageName = "imurmurhash"; @@ -15892,6 +17179,15 @@ let sha1 = "332650e10854d8c0ac58c192bdc27a8bf7e7a30c"; }; }; + "into-stream-2.0.1" = { + name = "into-stream"; + packageName = "into-stream"; + version = "2.0.1"; + src = fetchurl { + url = "http://registry.npmjs.org/into-stream/-/into-stream-2.0.1.tgz"; + sha1 = "db9b003694453eae091d8a5c84cc11507b781d31"; + }; + }; "into-stream-3.1.0" = { name = "into-stream"; packageName = "into-stream"; @@ -15928,15 +17224,6 @@ let sha512 = "wPVv/y/QQ/Uiirj/vh3oP+1Ww+AWehmi1g5fFWGPF6IpCBCDVrhgHRMvrLfdYcwDh3QJbGXDW4JAuzxElLSqKA=="; }; }; - "ip-0.3.3" = { - name = "ip"; - packageName = "ip"; - version = "0.3.3"; - src = fetchurl { - url = "https://registry.npmjs.org/ip/-/ip-0.3.3.tgz"; - sha1 = "8ee8309e92f0b040d287f72efaca1a21702d3fb4"; - }; - }; "ip-1.1.5" = { name = "ip"; packageName = "ip"; @@ -15973,15 +17260,6 @@ let sha1 = "5fa78cf301b825c78abc3042d812723049ea23c7"; }; }; - "ipaddr.js-1.4.0" = { - name = "ipaddr.js"; - packageName = "ipaddr.js"; - version = "1.4.0"; - src = fetchurl { - url = "https://registry.npmjs.org/ipaddr.js/-/ipaddr.js-1.4.0.tgz"; - sha1 = "296aca878a821816e5b85d0a285a99bcff4582f0"; - }; - }; "ipaddr.js-1.8.0" = { name = "ipaddr.js"; packageName = "ipaddr.js"; @@ -16090,13 +17368,13 @@ let sha512 = "pyfU/0kHdISIgslFfZN9nfY1Gk3MquQgUm1mJTjdkEPpkAKNWuBTSqFwewOpR7N351VkErCiyV71zX7mlQQqsg=="; }; }; - "is-arguments-1.0.2" = { + "is-arguments-1.0.4" = { name = "is-arguments"; packageName = "is-arguments"; - version = "1.0.2"; + version = "1.0.4"; src = fetchurl { - url = "https://registry.npmjs.org/is-arguments/-/is-arguments-1.0.2.tgz"; - sha1 = "07e30ad79531844179b642d2d8399435182c8727"; + url = "https://registry.npmjs.org/is-arguments/-/is-arguments-1.0.4.tgz"; + sha512 = "xPh0Rmt8NE65sNzvyUmWgI1tz3mKq74lGA0mL8LYZcoIzKOzDh6HmrYm3d18k60nHerC8A9Km8kYu87zfSFnLA=="; }; }; "is-arrayish-0.2.1" = { @@ -16162,6 +17440,15 @@ let sha512 = "r5p9sxJjYnArLjObpjA4xu5EKI3CuKHkJXMhT7kwbpUyIFD1n5PMAsoPvWnvtZiNz7LjkYDRZhd7FlI0eMijEA=="; }; }; + "is-canonical-base64-1.1.1" = { + name = "is-canonical-base64"; + packageName = "is-canonical-base64"; + version = "1.1.1"; + src = fetchurl { + url = "https://registry.npmjs.org/is-canonical-base64/-/is-canonical-base64-1.1.1.tgz"; + sha512 = "o6t/DwgEapC0bsloqtegAQyZzQXaQ5+8fzsyf2KmLqupC2ifLFq/lMQiFCJeGpdSrK1o6GL+WW2lRU050lLlFg=="; + }; + }; "is-ci-1.2.1" = { name = "is-ci"; packageName = "is-ci"; @@ -16252,13 +17539,13 @@ let sha1 = "a6a2f32ffd2dfb04f5ca25ecd0f6b83cf798a1e1"; }; }; - "is-electron-2.1.0" = { + "is-electron-2.2.0" = { name = "is-electron"; packageName = "is-electron"; - version = "2.1.0"; + version = "2.2.0"; src = fetchurl { - url = "https://registry.npmjs.org/is-electron/-/is-electron-2.1.0.tgz"; - sha512 = "dkg5xT383+M6zIbbXW/z7n2nz4SFUi2OSyhntnFYkRdtV+HVEfdjEK+5AWisfYgkpe3WYjTIuh7toaKmSfFVWw=="; + url = "https://registry.npmjs.org/is-electron/-/is-electron-2.2.0.tgz"; + sha512 = "SpMppC2XR3YdxSzczXReBjqs2zGscWQpBIKqwXYBFic0ERaxNVgwLCHwOLZeESfdJQjX0RDvrJ1lBXX2ij+G1Q=="; }; }; "is-equal-shallow-0.1.3" = { @@ -16441,6 +17728,15 @@ let sha512 = "JfyDDwUdtS4yHCgUpxOyKB9dnfZ0gecufxB0eytX6BmSXSE+8dbxDGt+V7CNRIRJ9sYFV/WQt2KJG6hNob2sBw=="; }; }; + "is-module-1.0.0" = { + name = "is-module"; + packageName = "is-module"; + version = "1.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/is-module/-/is-module-1.0.0.tgz"; + sha1 = "3258fb69f78c14d5b815d664336b4cffb6441591"; + }; + }; "is-my-ip-valid-1.0.0" = { name = "is-my-ip-valid"; packageName = "is-my-ip-valid"; @@ -16945,13 +18241,13 @@ let sha512 = "8cJBL5tTd2OS0dM4jz07wQd5g0dCCqIhUxPIGtZfa5L6hWlvV5MHTITy/DBAsF+Oe2LS1X3krBUhNwaGUWpWxw=="; }; }; - "isemail-3.1.3" = { + "isemail-3.2.0" = { name = "isemail"; packageName = "isemail"; - version = "3.1.3"; + version = "3.2.0"; src = fetchurl { - url = "https://registry.npmjs.org/isemail/-/isemail-3.1.3.tgz"; - sha512 = "5xbsG5wYADIcB+mfLsd+nst1V/D+I7EU7LEZPo2GOIMu4JzfcRs5yQoypP4avA7QtUqgxYLKBYNv4IdzBmbhdw=="; + url = "https://registry.npmjs.org/isemail/-/isemail-3.2.0.tgz"; + sha512 = "zKqkK+O+dGqevc93KNsbZ/TqTUFd46MwWjYOoMrjIMZ51eU7DtQG3Wmd9SQQT7i7RVnuTPEiYEWHU3MSbxC1Tg=="; }; }; "isexe-1.1.2" = { @@ -17008,6 +18304,24 @@ let sha1 = "47e63f7af55afa6f92e1500e690eb8b8529c099a"; }; }; + "istanbul-lib-coverage-1.2.1" = { + name = "istanbul-lib-coverage"; + packageName = "istanbul-lib-coverage"; + version = "1.2.1"; + src = fetchurl { + url = "https://registry.npmjs.org/istanbul-lib-coverage/-/istanbul-lib-coverage-1.2.1.tgz"; + sha512 = "PzITeunAgyGbtY1ibVIUiV679EFChHjoMNRibEIobvmrCRaIgwLxNucOSimtNWUhEib/oO7QY2imD75JVgCJWQ=="; + }; + }; + "istanbul-lib-instrument-1.10.2" = { + name = "istanbul-lib-instrument"; + packageName = "istanbul-lib-instrument"; + version = "1.10.2"; + src = fetchurl { + url = "https://registry.npmjs.org/istanbul-lib-instrument/-/istanbul-lib-instrument-1.10.2.tgz"; + sha512 = "aWHxfxDqvh/ZlxR8BBaEPVSWDPUkGD63VjGQn3jcw8jCp7sHEMKcrj4xfJn/ABzdMEHiQNyvDQhqm5o8+SQg7A=="; + }; + }; "isurl-1.0.0" = { name = "isurl"; packageName = "isurl"; @@ -17179,6 +18493,15 @@ let sha512 = "xcinL3AuDJk7VSzsHgb9DvvIXayBbadtMZ4HFPx8rUszbW1MuNMlwYVC4zzCZ6e1sqZpnNS5ZFYOhXqA39T7LQ=="; }; }; + "js-levenshtein-1.1.4" = { + name = "js-levenshtein"; + packageName = "js-levenshtein"; + version = "1.1.4"; + src = fetchurl { + url = "https://registry.npmjs.org/js-levenshtein/-/js-levenshtein-1.1.4.tgz"; + sha512 = "PxfGzSs0ztShKrUYPIn5r0MtyAhYcCwmndozzpz8YObbPnD1jFxzlBGbRnX2mIu6Z13xN6+PTu05TQFnZFlzow=="; + }; + }; "js-message-1.0.5" = { name = "js-message"; packageName = "js-message"; @@ -17206,6 +18529,15 @@ let sha1 = "c284e22824d5927aec962dcdf247174aefb0d190"; }; }; + "js-string-escape-1.0.1" = { + name = "js-string-escape"; + packageName = "js-string-escape"; + version = "1.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/js-string-escape/-/js-string-escape-1.0.1.tgz"; + sha1 = "e2625badbc0d67c7533e9edc1068c587ae4137ef"; + }; + }; "js-stringify-1.0.2" = { name = "js-stringify"; packageName = "js-stringify"; @@ -17296,22 +18628,31 @@ let sha1 = "40b402770c2bda23469096bee91ab675e3b1fc6e"; }; }; + "jsesc-0.5.0" = { + name = "jsesc"; + packageName = "jsesc"; + version = "0.5.0"; + src = fetchurl { + url = "http://registry.npmjs.org/jsesc/-/jsesc-0.5.0.tgz"; + sha1 = "e7dee66e35d6fc16f710fe91d5cf69f70f08911d"; + }; + }; "jsesc-1.3.0" = { name = "jsesc"; packageName = "jsesc"; version = "1.3.0"; src = fetchurl { - url = "https://registry.npmjs.org/jsesc/-/jsesc-1.3.0.tgz"; + url = "http://registry.npmjs.org/jsesc/-/jsesc-1.3.0.tgz"; sha1 = "46c3fec8c1892b12b0833db9bc7622176dbab34b"; }; }; - "jsesc-2.5.1" = { + "jsesc-2.5.2" = { name = "jsesc"; packageName = "jsesc"; - version = "2.5.1"; + version = "2.5.2"; src = fetchurl { - url = "https://registry.npmjs.org/jsesc/-/jsesc-2.5.1.tgz"; - sha1 = "e421a2a8e20d6b0819df28908f782526b96dd1fe"; + url = "https://registry.npmjs.org/jsesc/-/jsesc-2.5.2.tgz"; + sha512 = "OYu7XEzjkCQ3C5Ps3QIZsQfNpqoJyZZA99wd9aWd05NCtC5pWOkShK2mkL6HXQR6/Cy2lbNdPlZBpuQHXE63gA=="; }; }; "jshint-2.9.6" = { @@ -17755,6 +19096,16 @@ let sha512 = "5W8NUaFRFRqTOL7ZDDrx5qWHJyBXy6velVudIzQUSoqAAYqzSh2Z7/m0Rf1QbmQJccegD0r+YZxBjzqoBiEeJQ=="; }; }; + "jszip-git://github.com/anmonteiro/jszip#patch-1" = { + name = "jszip"; + packageName = "jszip"; + version = "2.6.1"; + src = fetchgit { + url = "git://github.com/anmonteiro/jszip"; + rev = "5a92e8c9153a3557daa8d3540b00c50bd8554c49"; + sha256 = "00016993634d04b6f7eea8fae529b804d5a0b7ed2636361c7546a48b866e9c5c"; + }; + }; "junk-2.1.0" = { name = "junk"; packageName = "junk"; @@ -17941,7 +19292,7 @@ let packageName = "kew"; version = "0.1.7"; src = fetchurl { - url = "https://registry.npmjs.org/kew/-/kew-0.1.7.tgz"; + url = "http://registry.npmjs.org/kew/-/kew-0.1.7.tgz"; sha1 = "0a32a817ff1a9b3b12b8c9bacf4bc4d679af8e72"; }; }; @@ -17950,7 +19301,7 @@ let packageName = "kew"; version = "0.7.0"; src = fetchurl { - url = "https://registry.npmjs.org/kew/-/kew-0.7.0.tgz"; + url = "http://registry.npmjs.org/kew/-/kew-0.7.0.tgz"; sha1 = "79d93d2d33363d6fdd2970b335d9141ad591d79b"; }; }; @@ -18287,6 +19638,15 @@ let sha512 = "2qYbbiptPsPWGUI+AgB1gTNXqIjPpALRqrQyNx1zWYNZxhhuzEj/IE4Unu9weEBnsUEocfYe56xOGlAceb8/Fg=="; }; }; + "level-4.0.0" = { + name = "level"; + packageName = "level"; + version = "4.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/level/-/level-4.0.0.tgz"; + sha512 = "4epzCOlEcJ529NOdlAYiuiakS/kZTDdiKSBNJmE1B8bsmA+zEVwcpxyH86qJSQTpOu7SODrlaD9WgPRHLkGutA=="; + }; + }; "level-codec-6.2.0" = { name = "level-codec"; packageName = "level-codec"; @@ -18305,6 +19665,15 @@ let sha512 = "gNZlo1HRHz0BWxzGCyNf7xntAs2HKOPvvRBWtXsoDvEX4vMYnSTBS6ZnxoaiX7nhxSBPpegRa8CQ/hnfGBKk3Q=="; }; }; + "level-codec-9.0.0" = { + name = "level-codec"; + packageName = "level-codec"; + version = "9.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/level-codec/-/level-codec-9.0.0.tgz"; + sha512 = "OIpVvjCcZNP5SdhcNupnsI1zo5Y9Vpm+k/F1gfG5kXrtctlrwanisakweJtE0uA0OpLukRfOQae+Fg0M5Debhg=="; + }; + }; "level-errors-1.1.2" = { name = "level-errors"; packageName = "level-errors"; @@ -18314,6 +19683,15 @@ let sha512 = "Sw/IJwWbPKF5Ai4Wz60B52yj0zYeqzObLh8k1Tk88jVmD51cJSKWSYpRyhVIvFzZdvsPqlH5wfhp/yxdsaQH4w=="; }; }; + "level-errors-2.0.0" = { + name = "level-errors"; + packageName = "level-errors"; + version = "2.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/level-errors/-/level-errors-2.0.0.tgz"; + sha512 = "AmY4HCp9h3OiU19uG+3YWkdELgy05OTP/r23aNHaQKWv8DO787yZgsEuGVkoph40uwN+YdUKnANlrxSsoOaaxg=="; + }; + }; "level-iterator-stream-2.0.3" = { name = "level-iterator-stream"; packageName = "level-iterator-stream"; @@ -18323,6 +19701,15 @@ let sha512 = "I6Heg70nfF+e5Y3/qfthJFexhRw/Gi3bIymCoXAlijZdAcLaPuWSJs3KXyTYf23ID6g0o2QF62Yh+grOXY3Rig=="; }; }; + "level-iterator-stream-3.0.1" = { + name = "level-iterator-stream"; + packageName = "level-iterator-stream"; + version = "3.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/level-iterator-stream/-/level-iterator-stream-3.0.1.tgz"; + sha512 = "nEIQvxEED9yRThxvOrq8Aqziy4EGzrxSZK+QzEFAVuJvQ8glfyZ96GB6BoI4sBbLfjMXm2w4vu3Tkcm9obcY0g=="; + }; + }; "level-packager-0.18.0" = { name = "level-packager"; packageName = "level-packager"; @@ -18341,6 +19728,15 @@ let sha512 = "6l3G6dVkmdvHwOJrEA9d9hL6SSFrzwjQoLP8HsvohOgfY/8Z9LyTKNCM5Gc84wtsUWCuIHu6r+S6WrCtTWUJCw=="; }; }; + "level-packager-3.1.0" = { + name = "level-packager"; + packageName = "level-packager"; + version = "3.1.0"; + src = fetchurl { + url = "https://registry.npmjs.org/level-packager/-/level-packager-3.1.0.tgz"; + sha512 = "UxVEfK5WH0u0InR3WxTCSAroiorAGKzXWZT6i+nBjambmvINuXFUsFx2Ai3UIjUUtnyWhluv42jMlzUZCsAk9A=="; + }; + }; "level-post-1.0.7" = { name = "level-post"; packageName = "level-post"; @@ -18377,6 +19773,15 @@ let sha512 = "+ANRScj1npQQzv6e4DYAKRjVQZZ+ahMoubKrNP68nIq+l9bYgb+WiXF+14oTcQTg2f7qE9WHGW7rBG9nGSsA+A=="; }; }; + "leveldown-4.0.1" = { + name = "leveldown"; + packageName = "leveldown"; + version = "4.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/leveldown/-/leveldown-4.0.1.tgz"; + sha512 = "ZlBKVSsglPIPJnz4ggB8o2R0bxDxbsMzuQohbfgoFMVApyTE118DK5LNRG0cRju6rt3OkGxe0V6UYACGlq/byg=="; + }; + }; "levelup-0.18.6" = { name = "levelup"; packageName = "levelup"; @@ -18404,6 +19809,15 @@ let sha512 = "us+nTLUyd/eLnclYYddOCdAVw1hnymGx/9p4Jr5ThohStsjLqMVmbYiz6/SYFZEPXNF+AKQSvh6fA2e2KZpC8w=="; }; }; + "levelup-3.1.1" = { + name = "levelup"; + packageName = "levelup"; + version = "3.1.1"; + src = fetchurl { + url = "https://registry.npmjs.org/levelup/-/levelup-3.1.1.tgz"; + sha512 = "9N10xRkUU4dShSRRFTBdNaBxofz+PGaIZO962ckboJZiNmLuhVT6FZ6ZKAsICKfUBO76ySaYU6fJWX/jnj3Lcg=="; + }; + }; "leven-1.0.2" = { name = "leven"; packageName = "leven"; @@ -18566,6 +19980,15 @@ let sha1 = "d94a4648f9b1c179d64fa97291268bdb6ce9434f"; }; }; + "listenercount-1.0.1" = { + name = "listenercount"; + packageName = "listenercount"; + version = "1.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/listenercount/-/listenercount-1.0.1.tgz"; + sha1 = "84c8a72ab59c4725321480c975e6508342e70937"; + }; + }; "listify-1.0.0" = { name = "listify"; packageName = "listify"; @@ -20132,6 +21555,15 @@ let sha512 = "mmLbumEYMi5nXReB9js3WGsB8UE6cDBWyIO62Z4DNx6GbRhDxHNjA1MlzSpJ2S2KM1wyiPRA0d19uHWYYvMHjA=="; }; }; + "magic-string-0.25.1" = { + name = "magic-string"; + packageName = "magic-string"; + version = "0.25.1"; + src = fetchurl { + url = "https://registry.npmjs.org/magic-string/-/magic-string-0.25.1.tgz"; + sha512 = "sCuTz6pYom8Rlt4ISPFn6wuFodbKMIHUMv4Qko9P17dpxb7s52KJTmRuZZqHdGmLCK9AOcDare039nRIcfdkEg=="; + }; + }; "magnet-uri-2.0.1" = { name = "magnet-uri"; packageName = "magnet-uri"; @@ -20258,13 +21690,13 @@ let sha1 = "632b127c3ae5d6ad9e21cfdd9691b63b8944fcd2"; }; }; - "map-filter-reduce-3.2.1" = { + "map-filter-reduce-3.2.2" = { name = "map-filter-reduce"; packageName = "map-filter-reduce"; - version = "3.2.1"; + version = "3.2.2"; src = fetchurl { - url = "https://registry.npmjs.org/map-filter-reduce/-/map-filter-reduce-3.2.1.tgz"; - sha512 = "0+0C/3IVCX8PLXRyBL0umF/YMy3/ch7Zgxu91ZUIXS6YHyv4UVMZlkclUk9rQI63FQ+uvBdHYzo8VPJbIxKTVw=="; + url = "https://registry.npmjs.org/map-filter-reduce/-/map-filter-reduce-3.2.2.tgz"; + sha512 = "p+NIGQbEBxlw/qWwG+NME98G/9kjOQI70hmaH8QEZtIWfTmfMYLKQW4PJChP4izPHNAxlOfv/qefP0+2ZXn84A=="; }; }; "map-merge-1.1.0" = { @@ -20497,7 +21929,7 @@ let packageName = "media-typer"; version = "0.3.0"; src = fetchurl { - url = "https://registry.npmjs.org/media-typer/-/media-typer-0.3.0.tgz"; + url = "http://registry.npmjs.org/media-typer/-/media-typer-0.3.0.tgz"; sha1 = "8710d7af0aa626f8fffa1ce00168545263255748"; }; }; @@ -20528,15 +21960,6 @@ let sha1 = "5edd52b485ca1d900fe64895505399a0dfa45f76"; }; }; - "mem-3.0.1" = { - name = "mem"; - packageName = "mem"; - version = "3.0.1"; - src = fetchurl { - url = "https://registry.npmjs.org/mem/-/mem-3.0.1.tgz"; - sha512 = "QKs47bslvOE0NbXOqG6lMxn6Bk0Iuw0vfrIeLykmQle2LkCw1p48dZDdzE+D88b/xqRJcZGcMNeDvSVma+NuIQ=="; - }; - }; "mem-4.0.0" = { name = "mem"; packageName = "mem"; @@ -20641,7 +22064,7 @@ let packageName = "meow"; version = "3.7.0"; src = fetchurl { - url = "https://registry.npmjs.org/meow/-/meow-3.7.0.tgz"; + url = "http://registry.npmjs.org/meow/-/meow-3.7.0.tgz"; sha1 = "72cb668b425228290abbfa856892587308a801fb"; }; }; @@ -20663,13 +22086,13 @@ let sha512 = "CbTqYU17ABaLefO8vCU153ZZlprKYWDljcndKKDCFcYQITzWCXZAVk4QMFZPgvzrnUQ3uItnIE/LoUOwrT15Ig=="; }; }; - "merge-1.2.0" = { + "merge-1.2.1" = { name = "merge"; packageName = "merge"; - version = "1.2.0"; + version = "1.2.1"; src = fetchurl { - url = "https://registry.npmjs.org/merge/-/merge-1.2.0.tgz"; - sha1 = "7531e39d4949c281a66b8c5a6e0265e8b05894da"; + url = "https://registry.npmjs.org/merge/-/merge-1.2.1.tgz"; + sha512 = "VjFo4P5Whtj4vsLzsYBu5ayHhoHJ0UqNm7ibvShmbmoz7tGi0vXaoJbGdB+GmDMLUdg8DpQXEIeVDAe8MaABvQ=="; }; }; "merge-descriptors-0.0.2" = { @@ -20780,6 +22203,15 @@ let sha1 = "5529a4d67654134edcc5266656835b0f851afcee"; }; }; + "microbuffer-1.0.0" = { + name = "microbuffer"; + packageName = "microbuffer"; + version = "1.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/microbuffer/-/microbuffer-1.0.0.tgz"; + sha1 = "8b3832ed40c87d51f47bb234913a698a756d19d2"; + }; + }; "microee-0.0.6" = { name = "microee"; packageName = "microee"; @@ -20884,7 +22316,7 @@ let packageName = "mime-db"; version = "1.12.0"; src = fetchurl { - url = "https://registry.npmjs.org/mime-db/-/mime-db-1.12.0.tgz"; + url = "http://registry.npmjs.org/mime-db/-/mime-db-1.12.0.tgz"; sha1 = "3d0c63180f458eb10d325aaa37d7c58ae312e9d7"; }; }; @@ -20893,17 +22325,17 @@ let packageName = "mime-db"; version = "1.33.0"; src = fetchurl { - url = "https://registry.npmjs.org/mime-db/-/mime-db-1.33.0.tgz"; + url = "http://registry.npmjs.org/mime-db/-/mime-db-1.33.0.tgz"; sha512 = "BHJ/EKruNIqJf/QahvxwQZXKygOQ256myeN/Ew+THcAa5q+PjyTTMMeNQC4DZw5AwfvelsUrA6B67NKMqXDbzQ=="; }; }; - "mime-db-1.36.0" = { + "mime-db-1.37.0" = { name = "mime-db"; packageName = "mime-db"; - version = "1.36.0"; + version = "1.37.0"; src = fetchurl { - url = "https://registry.npmjs.org/mime-db/-/mime-db-1.36.0.tgz"; - sha512 = "L+xvyD9MkoYMXb1jAmzI/lWYAxAMCPvIBSWur0PZ5nOf5euahRLVqH//FKW9mWp2lkqUgYiXPgkzfMUFi4zVDw=="; + url = "https://registry.npmjs.org/mime-db/-/mime-db-1.37.0.tgz"; + sha512 = "R3C4db6bgQhlIhPU48fUtdVmKnflq+hRdad7IyKhtFj06VPNVdk2RhiYL3UjQIlso8L+YxAtFkobT0VK+S/ybg=="; }; }; "mime-types-2.0.14" = { @@ -20911,7 +22343,7 @@ let packageName = "mime-types"; version = "2.0.14"; src = fetchurl { - url = "https://registry.npmjs.org/mime-types/-/mime-types-2.0.14.tgz"; + url = "http://registry.npmjs.org/mime-types/-/mime-types-2.0.14.tgz"; sha1 = "310e159db23e077f8bb22b748dabfa4957140aa6"; }; }; @@ -20920,17 +22352,17 @@ let packageName = "mime-types"; version = "2.1.18"; src = fetchurl { - url = "https://registry.npmjs.org/mime-types/-/mime-types-2.1.18.tgz"; + url = "http://registry.npmjs.org/mime-types/-/mime-types-2.1.18.tgz"; sha512 = "lc/aahn+t4/SWV/qcmumYjymLsWfN3ELhpmVuUFjgsORruuZPVSwAQryq+HHGvO/SI2KVX26bx+En+zhM8g8hQ=="; }; }; - "mime-types-2.1.20" = { + "mime-types-2.1.21" = { name = "mime-types"; packageName = "mime-types"; - version = "2.1.20"; + version = "2.1.21"; src = fetchurl { - url = "https://registry.npmjs.org/mime-types/-/mime-types-2.1.20.tgz"; - sha512 = "HrkrPaP9vGuWbLK1B1FfgAkbqNjIuy4eHlIYnFi7kamZyLLrGlo2mpcx0bBmNpKqBtYtAfGbodDddIgddSJC2A=="; + url = "https://registry.npmjs.org/mime-types/-/mime-types-2.1.21.tgz"; + sha512 = "3iL6DbwpyLzjR3xHSFNFeb9Nz/M8WDkX33t1GFQnFOllWk8pOrh/LSrB5OXlnlW5P9LH73X6loW/eogc+F5lJg=="; }; }; "mimelib-0.3.1" = { @@ -21086,13 +22518,13 @@ let sha512 = "FyBrT/d0d4+uiZRbqznPXqw3IpZZG3gl3wKWiX784FycUKVwBt0uLBFkQrtE4tZOrgo78nZp2jnKz3L65T5LdQ=="; }; }; - "minipass-2.3.4" = { + "minipass-2.3.5" = { name = "minipass"; packageName = "minipass"; - version = "2.3.4"; + version = "2.3.5"; src = fetchurl { - url = "https://registry.npmjs.org/minipass/-/minipass-2.3.4.tgz"; - sha512 = "mlouk1OHlaUE8Odt1drMtG1bAJA4ZA6B/ehysgV0LUIrDHdKgo1KorZq3pK0b/7Z7LJIQ12MNM6aC+Tn6lUZ5w=="; + url = "https://registry.npmjs.org/minipass/-/minipass-2.3.5.tgz"; + sha512 = "Gi1W4k059gyRbyVUZQ4mEqLm0YIUiGYfvxhF6SIlk3ui1WVxMTGfGdQ2SInh3PDrRTVvPKgULkpJtT4RH10+VA=="; }; }; "minizlib-1.1.1" = { @@ -21226,7 +22658,7 @@ let packageName = "modern-syslog"; version = "1.1.2"; src = fetchurl { - url = "https://registry.npmjs.org/modern-syslog/-/modern-syslog-1.1.2.tgz"; + url = "http://registry.npmjs.org/modern-syslog/-/modern-syslog-1.1.2.tgz"; sha1 = "f1fa58899f3f452d788f1573401212a4ef898de5"; }; }; @@ -21302,13 +22734,13 @@ let sha1 = "359a19ec634cda3c706c8709adda54c0329aaec4"; }; }; - "moment-timezone-0.5.21" = { + "moment-timezone-0.5.23" = { name = "moment-timezone"; packageName = "moment-timezone"; - version = "0.5.21"; + version = "0.5.23"; src = fetchurl { - url = "https://registry.npmjs.org/moment-timezone/-/moment-timezone-0.5.21.tgz"; - sha512 = "j96bAh4otsgj3lKydm3K7kdtA3iKf2m6MY2iSYCzCm5a1zmHo1g+aK3068dDEeocLZQIS9kU8bsdQHLqEvgW0A=="; + url = "https://registry.npmjs.org/moment-timezone/-/moment-timezone-0.5.23.tgz"; + sha512 = "WHFH85DkCfiNMDX5D3X7hpNH3/PUhjTGcD0U1SgfBGZxJ3qUmJh5FdvaFjcClxOvB3rzdfj4oRffbI38jEnC1w=="; }; }; "mongodb-1.2.14" = { @@ -21347,6 +22779,15 @@ let sha1 = "5ba5adc7aac85e1d7ce77be847161ed246b39603"; }; }; + "moo-0.4.3" = { + name = "moo"; + packageName = "moo"; + version = "0.4.3"; + src = fetchurl { + url = "https://registry.npmjs.org/moo/-/moo-0.4.3.tgz"; + sha512 = "gFD2xGCl8YFgGHsqJ9NKRVdwlioeW3mI1iqfLNYQOv0+6JRwG58Zk9DIGQgyIaffSYaO1xsKnMaYzzNr1KyIAw=="; + }; + }; "mooremachine-2.2.1" = { name = "mooremachine"; packageName = "mooremachine"; @@ -21572,15 +23013,6 @@ let sha512 = "6HuCZHA57WtNUzrKIvjJ8OMxigzveJ6D5i13y6TsgGu3X3zxABpuBvChpppOoGdB9SyWZcmqUs1fwUV/PpSQ7Q=="; }; }; - "multer-1.3.1" = { - name = "multer"; - packageName = "multer"; - version = "1.3.1"; - src = fetchurl { - url = "https://registry.npmjs.org/multer/-/multer-1.3.1.tgz"; - sha512 = "JHdEoxkA/5NgZRo91RNn4UT+HdcJV9XUo01DTkKC7vo1erNIngtuaw9Y0WI8RdTlyi+wMIbunflhghzVLuGJyw=="; - }; - }; "multer-1.4.1" = { name = "multer"; packageName = "multer"; @@ -21707,13 +23139,22 @@ let sha1 = "2a8f2ddf70eed564dff2d57f1e1a137d9f05078b"; }; }; - "multiserver-1.13.5" = { + "multiserver-1.13.7" = { name = "multiserver"; packageName = "multiserver"; - version = "1.13.5"; + version = "1.13.7"; + src = fetchurl { + url = "https://registry.npmjs.org/multiserver/-/multiserver-1.13.7.tgz"; + sha512 = "nQKAe6+u7nWJY29pJjegltw0ROj2bDc2bCTm9Bnr4EQrp5H5Tav+ESUjgl3D4vuQgCeveb4h+CtLtjB8QnK1Dw=="; + }; + }; + "multiserver-address-1.0.1" = { + name = "multiserver-address"; + packageName = "multiserver-address"; + version = "1.0.1"; src = fetchurl { - url = "https://registry.npmjs.org/multiserver/-/multiserver-1.13.5.tgz"; - sha512 = "1bxts3gFkHKJsGAaWR9D4nFLVH995eiEt38n/jPf1dni/FI0o6PH3hlar3ge/bMs58FX/T+DzrGNXZhEkMVFqA=="; + url = "https://registry.npmjs.org/multiserver-address/-/multiserver-address-1.0.1.tgz"; + sha512 = "IfZMAGs9onCLkYNSnNBri3JxuvhQYllMyh3W9ry86iEDcfW9uPVsHTHDsjDxQtL+dPq3byshmA+Y4LN2wLHwNw=="; }; }; "multistream-2.1.1" = { @@ -21941,22 +23382,31 @@ let sha1 = "4f3152e09540fde28c76f44b19bbcd1d5a42478d"; }; }; - "nanobus-4.3.4" = { + "nanobus-4.3.5" = { name = "nanobus"; packageName = "nanobus"; - version = "4.3.4"; + version = "4.3.5"; src = fetchurl { - url = "https://registry.npmjs.org/nanobus/-/nanobus-4.3.4.tgz"; - sha512 = "N1IBreECNaxmsaOLMqqm01K7XIp+sMvoVX8mvmT/p1VjM2FLcBU0lj0FalKooi2/2i+ph9WsEoEogOJevqQ6LQ=="; + url = "https://registry.npmjs.org/nanobus/-/nanobus-4.3.5.tgz"; + sha512 = "6UlqagLV9/ADqcTU60mipAPEd16WDbO+a9WeeGVn9RucHKNDTcPt9MOf8ZmAvbA3V2CV+EJS28eupNalg4YF8Q=="; }; }; - "nanoid-1.3.0" = { + "nanoid-1.3.4" = { name = "nanoid"; packageName = "nanoid"; - version = "1.3.0"; + version = "1.3.4"; + src = fetchurl { + url = "https://registry.npmjs.org/nanoid/-/nanoid-1.3.4.tgz"; + sha512 = "4ug4BsuHxiVHoRUe1ud6rUFT3WUMmjXt1W0quL0CviZQANdan7D8kqN5/maw53hmAApY/jfzMRkC57BNNs60ZQ=="; + }; + }; + "nanoid-2.0.0" = { + name = "nanoid"; + packageName = "nanoid"; + version = "2.0.0"; src = fetchurl { - url = "https://registry.npmjs.org/nanoid/-/nanoid-1.3.0.tgz"; - sha512 = "OP8SoC91Kyjl1sdSTEnM1xYh4gUEOSkUl6wRBUklWOPyfPRbeJbhvdhQYXEjVtZ1LI9amVMkIWQI2nO8O7DL9A=="; + url = "https://registry.npmjs.org/nanoid/-/nanoid-2.0.0.tgz"; + sha512 = "SG2qscLE3iM4C0CNzGrsAojJHSVHMS1J8NnvJ31P1lH8P0hGHOiafmniNJz6w6q7vuoDlV7RdySlJgtqkFEVtQ=="; }; }; "nanolru-1.0.0" = { @@ -22143,6 +23593,24 @@ let sha1 = "ae603b36b134bcec347b452422b0bf98d5832ec8"; }; }; + "nearley-2.15.1" = { + name = "nearley"; + packageName = "nearley"; + version = "2.15.1"; + src = fetchurl { + url = "https://registry.npmjs.org/nearley/-/nearley-2.15.1.tgz"; + sha512 = "8IUY/rUrKz2mIynUGh8k+tul1awMKEjeHHC5G3FHvvyAW6oq4mQfNp2c0BMea+sYZJvYcrrM6GmZVIle/GRXGw=="; + }; + }; + "neat-csv-2.1.0" = { + name = "neat-csv"; + packageName = "neat-csv"; + version = "2.1.0"; + src = fetchurl { + url = "http://registry.npmjs.org/neat-csv/-/neat-csv-2.1.0.tgz"; + sha1 = "06f58360c4c3b955bd467ddc85ae4511a3907a4c"; + }; + }; "neat-input-1.8.0" = { name = "neat-input"; packageName = "neat-input"; @@ -22315,6 +23783,15 @@ let sha1 = "4aa7bfd43f03f0b81c9702b13d6a858ddb326f3e"; }; }; + "nexe-3.0.0-beta.7" = { + name = "nexe"; + packageName = "nexe"; + version = "3.0.0-beta.7"; + src = fetchurl { + url = "https://registry.npmjs.org/nexe/-/nexe-3.0.0-beta.7.tgz"; + sha512 = "Vnvd/rHCDyvc3ZxEX/sSw6lCMsBLHqkhGQS627MtetIiFBj1G7oRw9y1All8a7Tzi560o+SGIkAbnjFR60wNlQ=="; + }; + }; "next-event-1.0.0" = { name = "next-event"; packageName = "next-event"; @@ -22338,7 +23815,7 @@ let packageName = "next-tick"; version = "1.0.0"; src = fetchurl { - url = "https://registry.npmjs.org/next-tick/-/next-tick-1.0.0.tgz"; + url = "http://registry.npmjs.org/next-tick/-/next-tick-1.0.0.tgz"; sha1 = "ca86d1fe8828169b0120208e3dc8424b9db8342c"; }; }; @@ -22369,13 +23846,13 @@ let sha512 = "rmTZ9kz+f3rCvK2TD1Ue/oZlns7OGoIWP4fc3llxxRXlOkHKoWPPWJOfFYpITabSow43QJbRIoHQXtt10VldyQ=="; }; }; - "node-abi-2.4.5" = { + "node-abi-2.5.0" = { name = "node-abi"; packageName = "node-abi"; - version = "2.4.5"; + version = "2.5.0"; src = fetchurl { - url = "https://registry.npmjs.org/node-abi/-/node-abi-2.4.5.tgz"; - sha512 = "aa/UC6Nr3+tqhHGRsAuw/edz7/q9nnetBrKWxj6rpTtm+0X9T1qU7lIEHMS3yN9JwAbRiKUbRRFy1PLz/y3aaA=="; + url = "https://registry.npmjs.org/node-abi/-/node-abi-2.5.0.tgz"; + sha512 = "9g2twBGSP6wIR5PW7tXvAWnEWKJDH/VskdXp168xsw9VVxpEGov8K4jsP4/VeoC7b2ZAyzckvMCuQuQlw44lXg=="; }; }; "node-alias-1.0.4" = { @@ -22387,13 +23864,13 @@ let sha1 = "1f1b916b56b9ea241c0135f97ced6940f556f292"; }; }; - "node-appc-0.2.48" = { + "node-appc-0.2.49" = { name = "node-appc"; packageName = "node-appc"; - version = "0.2.48"; + version = "0.2.49"; src = fetchurl { - url = "https://registry.npmjs.org/node-appc/-/node-appc-0.2.48.tgz"; - sha512 = "fKPynW61a+PmqssitvJXxN2FZAN/w4eBvmE5zqJXl+eDfOip/b26y7SIGGJOn23KjAYX2uyl2Oy/+qTaRz/gHQ=="; + url = "https://registry.npmjs.org/node-appc/-/node-appc-0.2.49.tgz"; + sha512 = "PldEN7CgEy7ekSZyomgpajLX7STCZPDJI6rGy7FCbWi7ZJgTt9/C3omCxPkIKVjtwcXzXoSA31zUWUnBzTkEUg=="; }; }; "node-cache-4.2.0" = { @@ -22432,13 +23909,13 @@ let sha1 = "ab884e8e7e57e38a944753cec706f788d1768bb5"; }; }; - "node-fetch-2.2.0" = { + "node-fetch-2.2.1" = { name = "node-fetch"; packageName = "node-fetch"; - version = "2.2.0"; + version = "2.2.1"; src = fetchurl { - url = "https://registry.npmjs.org/node-fetch/-/node-fetch-2.2.0.tgz"; - sha512 = "OayFWziIxiHY8bCUyLX6sTpDH8Jsbp4FfYd1j1f7vZyfgkcOnAyM4oQR16f8a0s7Gl/viMGRey8eScYk4V4EZA=="; + url = "https://registry.npmjs.org/node-fetch/-/node-fetch-2.2.1.tgz"; + sha512 = "ObXBpNCD3A/vYQiQtEWl7DuqjAXjfptYFuGHLdPl5U19/6kJuZV+8uMHLrkj3wJrJoyfg4nhgyFixZdaZoAiEQ=="; }; }; "node-fetch-npm-2.0.2" = { @@ -22522,6 +23999,15 @@ let sha512 = "5AzFzdoIMb89hBGMZglEegffzgRg+ZFoUmisQ8HI4j1KDdpx13J0taNp2y9xPbur6W61gepGDDotGBVQ7mfUCg=="; }; }; + "node-modules-regexp-1.0.0" = { + name = "node-modules-regexp"; + packageName = "node-modules-regexp"; + version = "1.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/node-modules-regexp/-/node-modules-regexp-1.0.0.tgz"; + sha1 = "8d9dbe28964a4ac5712e9131642107c71e90ec40"; + }; + }; "node-notifier-5.2.1" = { name = "node-notifier"; packageName = "node-notifier"; @@ -22531,6 +24017,15 @@ let sha512 = "MIBs+AAd6dJ2SklbbE8RUDRlIVhU8MaNLh1A9SUZDUHPiZkWLFde6UNwG41yQHZEToHgJMXqyVZ9UcS/ReOVTg=="; }; }; + "node-notifier-5.3.0" = { + name = "node-notifier"; + packageName = "node-notifier"; + version = "5.3.0"; + src = fetchurl { + url = "https://registry.npmjs.org/node-notifier/-/node-notifier-5.3.0.tgz"; + sha512 = "AhENzCSGZnZJgBARsUjnQ7DnZbzyP+HxlVXuD0xqAnvL8q+OqtSX7lGg9e8nHzwXkMMXNdVeqq4E2M3EUAqX6Q=="; + }; + }; "node-phantom-simple-2.2.4" = { name = "node-phantom-simple"; packageName = "node-phantom-simple"; @@ -22576,31 +24071,40 @@ let sha512 = "Bb9M5bFrOqoFxBVxfstBM/g+VPaV4EPQptXQBMrlsCd3P40CXcGL0mDylXU+3cekWNd5hLHfqTHvXJdkowHGDw=="; }; }; - "node-red-node-rbe-0.2.3" = { + "node-red-node-rbe-0.2.4" = { name = "node-red-node-rbe"; packageName = "node-red-node-rbe"; - version = "0.2.3"; + version = "0.2.4"; src = fetchurl { - url = "https://registry.npmjs.org/node-red-node-rbe/-/node-red-node-rbe-0.2.3.tgz"; - sha512 = "5+MtH9t8tX6Aw6M+SeoyGR23XplNTOln3aTQ7El9tj/606bxea4GxYyvV4ymTmuoODz3GXQlLLQVdGkFLyIdDQ=="; + url = "https://registry.npmjs.org/node-red-node-rbe/-/node-red-node-rbe-0.2.4.tgz"; + sha512 = "ft/8/dTRGzGQ9vCnAzuBxzR+aDv4Yun/vuSKi/eI5Qj2/ZBal28L9HpWziSTWlLrMhZns8CRz7s2p84P2ee/vA=="; }; }; - "node-red-node-twitter-1.1.3" = { + "node-red-node-twitter-1.1.4" = { name = "node-red-node-twitter"; packageName = "node-red-node-twitter"; - version = "1.1.3"; + version = "1.1.4"; + src = fetchurl { + url = "https://registry.npmjs.org/node-red-node-twitter/-/node-red-node-twitter-1.1.4.tgz"; + sha512 = "mkw8HOosXHMBRdyJkio77vPx4Ls5IY26P5ZyoMWmKMkimXKTnX00DdpmNlkW+dHwMDYq1H66WzFtQhNOdEAbgA=="; + }; + }; + "node-releases-1.0.3" = { + name = "node-releases"; + packageName = "node-releases"; + version = "1.0.3"; src = fetchurl { - url = "https://registry.npmjs.org/node-red-node-twitter/-/node-red-node-twitter-1.1.3.tgz"; - sha512 = "H4q6wfIeDkDp7ykFh4nK7vrnJa9NI3FmC2rASabup/9LEJ5XD5KXH07eqo+B3Cf3jAzJDmL7RFEFucA8C1oqCw=="; + url = "https://registry.npmjs.org/node-releases/-/node-releases-1.0.3.tgz"; + sha512 = "ZaZWMsbuDcetpHmYeKWPO6e63pSXLb50M7lJgCbcM2nC/nQC3daNifmtp5a2kp7EWwYfhuvH6zLPWkrF8IiDdw=="; }; }; - "node-request-by-swagger-1.1.3" = { + "node-request-by-swagger-1.1.4" = { name = "node-request-by-swagger"; packageName = "node-request-by-swagger"; - version = "1.1.3"; + version = "1.1.4"; src = fetchurl { - url = "https://registry.npmjs.org/node-request-by-swagger/-/node-request-by-swagger-1.1.3.tgz"; - sha512 = "granjsEA0c+1GnJaKnOjJy1E3wWLADUnAg+x1eopWOo+oMDfRYKJjCBaInUgrli/yEnvUAJoymGhExP/6tcOyQ=="; + url = "https://registry.npmjs.org/node-request-by-swagger/-/node-request-by-swagger-1.1.4.tgz"; + sha512 = "hwaTaFPUwNKns5qXwGJpLQM3Z5zRluYeAxpYy1L8fWmWdT/DjLmsnW8/oGlSN8Vo4R28c2znfUoBUiB/RlPptw=="; }; }; "node-ssdp-2.9.1" = { @@ -22662,7 +24166,7 @@ let packageName = "node.extend"; version = "1.0.0"; src = fetchurl { - url = "https://registry.npmjs.org/node.extend/-/node.extend-1.0.0.tgz"; + url = "http://registry.npmjs.org/node.extend/-/node.extend-1.0.0.tgz"; sha1 = "ab83960c477280d01ba5554a0d8fd3acfe39336e"; }; }; @@ -22675,6 +24179,15 @@ let sha1 = "7525a2875677ea534784a5e10ac78956139614df"; }; }; + "node.extend-2.0.1" = { + name = "node.extend"; + packageName = "node.extend"; + version = "2.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/node.extend/-/node.extend-2.0.1.tgz"; + sha512 = "42zXr2Cy16E58KEHm8vz2LE3IJWW0xUrQw0L+R2sII7NIiqKMa9JlwX02YFHg5+IKDg+Es1ZE8nD7ucUWR16UA=="; + }; + }; "nodebmc-0.0.7" = { name = "nodebmc"; packageName = "nodebmc"; @@ -22747,13 +24260,13 @@ let sha1 = "586db8101db30cb4438eb546737a41aad0cf13d5"; }; }; - "nodemon-1.18.4" = { + "nodemon-1.18.6" = { name = "nodemon"; packageName = "nodemon"; - version = "1.18.4"; + version = "1.18.6"; src = fetchurl { - url = "https://registry.npmjs.org/nodemon/-/nodemon-1.18.4.tgz"; - sha512 = "hyK6vl65IPnky/ee+D3IWvVGgJa/m3No2/Xc/3wanS6Ce1MWjCzH6NnhPJ/vZM+6JFym16jtHx51lmCMB9HDtg=="; + url = "https://registry.npmjs.org/nodemon/-/nodemon-1.18.6.tgz"; + sha512 = "4pHQNYEZun+IkIC2jCaXEhkZnfA7rQe73i8RkdRyDJls/K+WxR7IpI5uNUsAvQ0zWvYcCDNGD+XVtw2ZG86/uQ=="; }; }; "nodesecurity-npm-utils-6.0.0" = { @@ -22765,6 +24278,15 @@ let sha512 = "NLRle1woNaT2orR6fue2jNqkhxDTktgJj3sZxvR/8kp21pvOY7Gwlx5wvo0H8ZVPqdgd2nE2ADB9wDu5Cl8zNg=="; }; }; + "nomnom-1.6.2" = { + name = "nomnom"; + packageName = "nomnom"; + version = "1.6.2"; + src = fetchurl { + url = "https://registry.npmjs.org/nomnom/-/nomnom-1.6.2.tgz"; + sha1 = "84a66a260174408fc5b77a18f888eccc44fb6971"; + }; + }; "nomnom-1.8.1" = { name = "nomnom"; packageName = "nomnom"; @@ -22882,6 +24404,15 @@ let sha512 = "D6MUW4K/VzoJ4rJ01JFKxDrtY1v9wrgzCX5f2qj/lzH1m/lW6MhUZFKerVsnyjOhOsYzI9Kqqak+10l4LvLpMw=="; }; }; + "normalize-url-3.3.0" = { + name = "normalize-url"; + packageName = "normalize-url"; + version = "3.3.0"; + src = fetchurl { + url = "https://registry.npmjs.org/normalize-url/-/normalize-url-3.3.0.tgz"; + sha512 = "U+JJi7duF1o+u2pynbp2zXDW2/PADgC30f0GsHZtRh+HOcXHnw137TrNlyxxRvWW5fjKd3bcLHPxofWuCjaeZg=="; + }; + }; "now-and-later-2.0.0" = { name = "now-and-later"; packageName = "now-and-later"; @@ -22981,13 +24512,13 @@ let sha512 = "COlxSO5PK9UvZXIa7/sqJDZOlffWFx9+CKJJWkdbhUJMBwcf9sof2jxt4uiVsl+nY3sy0/XFGl4iGr8GoKfiXA=="; }; }; - "npm-pick-manifest-2.1.0" = { + "npm-pick-manifest-2.2.3" = { name = "npm-pick-manifest"; packageName = "npm-pick-manifest"; - version = "2.1.0"; + version = "2.2.3"; src = fetchurl { - url = "https://registry.npmjs.org/npm-pick-manifest/-/npm-pick-manifest-2.1.0.tgz"; - sha512 = "q9zLP8cTr8xKPmMZN3naxp1k/NxVFsjxN6uWuO1tiw9gxg7wZWQ/b5UTfzD0ANw2q1lQxdLKTeCCksq+bPSgbQ=="; + url = "https://registry.npmjs.org/npm-pick-manifest/-/npm-pick-manifest-2.2.3.tgz"; + sha512 = "+IluBC5K201+gRU85vFlUwX3PFShZAbAgDNp2ewJdWMVSppdo/Zih0ul2Ecky/X7b51J7LrrUAP+XOmOCvYZqA=="; }; }; "npm-prefix-1.2.0" = { @@ -23112,7 +24643,7 @@ let packageName = "npmlog"; version = "2.0.4"; src = fetchurl { - url = "https://registry.npmjs.org/npmlog/-/npmlog-2.0.4.tgz"; + url = "http://registry.npmjs.org/npmlog/-/npmlog-2.0.4.tgz"; sha1 = "98b52530f2514ca90d09ec5b22c8846722375692"; }; }; @@ -23130,7 +24661,7 @@ let packageName = "nprogress"; version = "0.2.0"; src = fetchurl { - url = "https://registry.npmjs.org/nprogress/-/nprogress-0.2.0.tgz"; + url = "http://registry.npmjs.org/nprogress/-/nprogress-0.2.0.tgz"; sha1 = "cb8f34c53213d895723fcbab907e9422adbcafb1"; }; }; @@ -23143,13 +24674,13 @@ let sha1 = "883ca2ec605f5ed64a4d5190b2625401928f8f8d"; }; }; - "nth-check-1.0.1" = { + "nth-check-1.0.2" = { name = "nth-check"; packageName = "nth-check"; - version = "1.0.1"; + version = "1.0.2"; src = fetchurl { - url = "https://registry.npmjs.org/nth-check/-/nth-check-1.0.1.tgz"; - sha1 = "9929acdf628fc2c41098deab82ac580cf149aae4"; + url = "https://registry.npmjs.org/nth-check/-/nth-check-1.0.2.tgz"; + sha512 = "WeBOdju8SnzPN5vTUJYxYUxLeXpCaVP5i5e0LF8fg7WORF2Wd7wFX/pk0tYZk7s8T+J7VLy0Da6J1+wCT0AtHg=="; }; }; "number-is-nan-1.0.1" = { @@ -23621,13 +25152,13 @@ let sha1 = "42c3e18ec95466b6bf0dc42f3a2945c3f0cad8fc"; }; }; - "opencollective-postinstall-2.0.0" = { + "opencollective-postinstall-2.0.1" = { name = "opencollective-postinstall"; packageName = "opencollective-postinstall"; - version = "2.0.0"; + version = "2.0.1"; src = fetchurl { - url = "https://registry.npmjs.org/opencollective-postinstall/-/opencollective-postinstall-2.0.0.tgz"; - sha512 = "XAe80GycLe2yRGnJsUtt+EO5lk06XYRQt4kJJe53O2kJHPZJOZ+XMF/b47HW96e6LhfKVpwnXVr/s56jhV98jg=="; + url = "https://registry.npmjs.org/opencollective-postinstall/-/opencollective-postinstall-2.0.1.tgz"; + sha512 = "saQQ9hjLwu/oS0492eyYotoh+bra1819cfAT5rjY/e4REWwuc8IgZ844Oo44SiftWcJuBiqp0SA0BFVbmLX0IQ=="; }; }; "opener-1.4.3" = { @@ -23702,13 +25233,13 @@ let sha512 = "YF9MNdVy/0qvJvDtunAOzFw9iasOQHpVthTCvGzxt61Il64AYSGdK+rYwld7NAfk9qJ7dt+hymBNSc9LNYS+Sw=="; }; }; - "optimism-0.6.6" = { + "optimism-0.6.8" = { name = "optimism"; packageName = "optimism"; - version = "0.6.6"; + version = "0.6.8"; src = fetchurl { - url = "https://registry.npmjs.org/optimism/-/optimism-0.6.6.tgz"; - sha512 = "1Y6LY7pYbXP5y6yeXYfXhxJi9hsxYAZWpt7bBp4seAwfcYtaN7tq9wot/pdrhyI809/K4gDm3BcZcEkmwGevjg=="; + url = "https://registry.npmjs.org/optimism/-/optimism-0.6.8.tgz"; + sha512 = "bN5n1KCxSqwBDnmgDnzMtQTHdL+uea2HYFx1smvtE+w2AMl0Uy31g0aXnP/Nt85OINnMJPRpJyfRQLTCqn5Weg=="; }; }; "optimist-0.2.8" = { @@ -23801,6 +25332,15 @@ let sha512 = "hNNlAd3gfv/iPmsNxYoAPLvxg7HuPozww7fFonMZvL84tP6Ox5igfk5j/+a9rtJJwqMgKK+JgWsAQik5o0HTLA=="; }; }; + "ora-3.0.0" = { + name = "ora"; + packageName = "ora"; + version = "3.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/ora/-/ora-3.0.0.tgz"; + sha512 = "LBS97LFe2RV6GJmXBi6OKcETKyklHNMV0xw7BtsVn2MlsgsydyZetSCbCANr+PFLmDyv4KV88nn0eCKza665Mg=="; + }; + }; "orchestrator-0.3.8" = { name = "orchestrator"; packageName = "orchestrator"; @@ -23851,7 +25391,7 @@ let packageName = "os-homedir"; version = "1.0.2"; src = fetchurl { - url = "https://registry.npmjs.org/os-homedir/-/os-homedir-1.0.2.tgz"; + url = "http://registry.npmjs.org/os-homedir/-/os-homedir-1.0.2.tgz"; sha1 = "ffbc4988336e0e833de0c168c7ef152121aa7fb3"; }; }; @@ -23873,15 +25413,6 @@ let sha512 = "3sslG3zJbEYcaC4YVAvDorjGxc7tv6KVATnLPZONiljsUncvihe9BQoVCEs0RZ1kmf4Hk9OBqlZfJZWI4GanKA=="; }; }; - "os-locale-3.0.0" = { - name = "os-locale"; - packageName = "os-locale"; - version = "3.0.0"; - src = fetchurl { - url = "https://registry.npmjs.org/os-locale/-/os-locale-3.0.0.tgz"; - sha512 = "4mi6ZXIp4OtcV/Bwzl9p9Cvae7KJv/czGIm/HK0iaXCuRh7BMpy4l4o4CLjN+atsRQpCW9Rs4FdhfnK0zaR1Jg=="; - }; - }; "os-locale-3.0.1" = { name = "os-locale"; packageName = "os-locale"; @@ -23923,7 +25454,7 @@ let packageName = "os-tmpdir"; version = "1.0.2"; src = fetchurl { - url = "https://registry.npmjs.org/os-tmpdir/-/os-tmpdir-1.0.2.tgz"; + url = "http://registry.npmjs.org/os-tmpdir/-/os-tmpdir-1.0.2.tgz"; sha1 = "bbe67406c79aa85c5cfec766fe5734555dfa1274"; }; }; @@ -23981,6 +25512,15 @@ let sha512 = "HNa1A8LvB1kie7cERyy21VNeHb2CWJJYqyyC2o3klWFfMGlFmWv2Z7sFgZH8ZiaYL95ydToKTFVXgMV/Os0bBQ=="; }; }; + "p-cancelable-1.0.0" = { + name = "p-cancelable"; + packageName = "p-cancelable"; + version = "1.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/p-cancelable/-/p-cancelable-1.0.0.tgz"; + sha512 = "USgPoaC6tkTGlS831CxsVdmZmyb8tR1D+hStI84MyckLOzfJlYQUweomrwE3D8T7u5u5GVuW064LT501wHTYYA=="; + }; + }; "p-defer-1.0.0" = { name = "p-defer"; packageName = "p-defer"; @@ -23990,6 +25530,15 @@ let sha1 = "9f6eb182f6c9aa8cd743004a7d4f96b196b0fb0c"; }; }; + "p-event-2.1.0" = { + name = "p-event"; + packageName = "p-event"; + version = "2.1.0"; + src = fetchurl { + url = "https://registry.npmjs.org/p-event/-/p-event-2.1.0.tgz"; + sha512 = "sDEpDVnzLGlJj3k590uUdpfEUySP5yAYlvfTCu5hTDvSTXQVecYWKcEwdO49PrZlnJ5wkfAvtawnno/jyXeqvA=="; + }; + }; "p-finally-1.0.0" = { name = "p-finally"; packageName = "p-finally"; @@ -24206,13 +25755,13 @@ let sha1 = "79b302fc144cdfbb4ab6feba7040e6a5d99c79c7"; }; }; - "pacote-9.1.0" = { + "pacote-9.2.3" = { name = "pacote"; packageName = "pacote"; - version = "9.1.0"; + version = "9.2.3"; src = fetchurl { - url = "https://registry.npmjs.org/pacote/-/pacote-9.1.0.tgz"; - sha512 = "AFXaSWhOtQf3jHqEvg+ZYH/dfT8TKq6TKspJ4qEFwVVuh5aGvMIk6SNF8vqfzz+cBceDIs9drOcpBbrPai7i+g=="; + url = "https://registry.npmjs.org/pacote/-/pacote-9.2.3.tgz"; + sha512 = "Y3+yY3nBRAxMlZWvr62XLJxOwCmG9UmkGZkFurWHoCjqF0cZL72cTOCRJTvWw8T4OhJS2RTg13x4oYYriauvEw=="; }; }; "pad-0.0.5" = { @@ -24269,6 +25818,15 @@ let sha1 = "df94fd8cf6531ecf75e6bef9a0858fbc72be2247"; }; }; + "paredit.js-0.3.4" = { + name = "paredit.js"; + packageName = "paredit.js"; + version = "0.3.4"; + src = fetchurl { + url = "https://registry.npmjs.org/paredit.js/-/paredit.js-0.3.4.tgz"; + sha512 = "b6t7ORo/MwT6xvRiuu1c1do3+CAUd7/0rgc1d3qNHUeP64zxy4ttLIvK7SEHzyfyDLvD9pPuV9mYKHf6MgUkmg=="; + }; + }; "parents-1.0.1" = { name = "parents"; packageName = "parents"; @@ -24715,7 +26273,7 @@ let packageName = "path-is-absolute"; version = "1.0.1"; src = fetchurl { - url = "https://registry.npmjs.org/path-is-absolute/-/path-is-absolute-1.0.1.tgz"; + url = "http://registry.npmjs.org/path-is-absolute/-/path-is-absolute-1.0.1.tgz"; sha1 = "174b9268735534ffbc7ace6bf53a5a9e1b5c5f5f"; }; }; @@ -24986,7 +26544,7 @@ let packageName = "phantomjs"; version = "1.9.20"; src = fetchurl { - url = "https://registry.npmjs.org/phantomjs/-/phantomjs-1.9.20.tgz"; + url = "http://registry.npmjs.org/phantomjs/-/phantomjs-1.9.20.tgz"; sha1 = "4424aca20e14d255c0b0889af6f6b8973da10e0d"; }; }; @@ -24999,6 +26557,15 @@ let sha1 = "efd212a4a3966d3647684ea8ba788549be2aefef"; }; }; + "pid-from-port-1.1.3" = { + name = "pid-from-port"; + packageName = "pid-from-port"; + version = "1.1.3"; + src = fetchurl { + url = "https://registry.npmjs.org/pid-from-port/-/pid-from-port-1.1.3.tgz"; + sha512 = "OlE82n3yMOE5dY9RMOwxhoWefeMlxwk5IVxoj0sSzSFIlmvhN4obzTvO3s/d/b5JhcgXikjaspsy/HuUDTqbBg=="; + }; + }; "piece-length-1.0.0" = { name = "piece-length"; packageName = "piece-length"; @@ -25013,7 +26580,7 @@ let packageName = "pify"; version = "2.3.0"; src = fetchurl { - url = "https://registry.npmjs.org/pify/-/pify-2.3.0.tgz"; + url = "http://registry.npmjs.org/pify/-/pify-2.3.0.tgz"; sha1 = "ed141a6ac043a849ea588498e7dca8b15330e90c"; }; }; @@ -25026,6 +26593,24 @@ let sha1 = "e5a4acd2c101fdf3d9a4d07f0dbc4db49dd28176"; }; }; + "pify-4.0.1" = { + name = "pify"; + packageName = "pify"; + version = "4.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/pify/-/pify-4.0.1.tgz"; + sha512 = "uB80kBFb/tfd68bVleG9T5GGsGPjJrLAUpR5PZIrhBnIaRTQRjqdJSsIKkOP6OAIFbj7GOrcudc5pNjZ+geV2g=="; + }; + }; + "pinkie-1.0.0" = { + name = "pinkie"; + packageName = "pinkie"; + version = "1.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/pinkie/-/pinkie-1.0.0.tgz"; + sha1 = "5a47f28ba1015d0201bda7bf0f358e47bec8c7e4"; + }; + }; "pinkie-2.0.4" = { name = "pinkie"; packageName = "pinkie"; @@ -25035,6 +26620,15 @@ let sha1 = "72556b80cfa0d48a974e80e77248e80ed4f7f870"; }; }; + "pinkie-promise-1.0.0" = { + name = "pinkie-promise"; + packageName = "pinkie-promise"; + version = "1.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/pinkie-promise/-/pinkie-promise-1.0.0.tgz"; + sha1 = "d1da67f5482563bb7cf57f286ae2822ecfbf3670"; + }; + }; "pinkie-promise-2.0.1" = { name = "pinkie-promise"; packageName = "pinkie-promise"; @@ -25044,13 +26638,22 @@ let sha1 = "2135d6dfa7a358c069ac9b178776288228450ffa"; }; }; - "pino-5.0.4" = { + "pino-5.5.0" = { name = "pino"; packageName = "pino"; - version = "5.0.4"; + version = "5.5.0"; src = fetchurl { - url = "https://registry.npmjs.org/pino/-/pino-5.0.4.tgz"; - sha512 = "w7UohXesFggN77UyTnt0A7FqkEiq6TbeXgTvY7g1wFGXoGbxmF780uFm8oQKaWlFi7vnzDRkBnYHNaaHFUKEoQ=="; + url = "https://registry.npmjs.org/pino/-/pino-5.5.0.tgz"; + sha512 = "cCaBKVwutiaGwgKXyOvsRSCeBxgi2j0X1PEK1cog1/9SMDhgL8+iJwWvTKUef20HDyGfZIUq5KaH0ZOhWLHYSw=="; + }; + }; + "pino-5.8.1" = { + name = "pino"; + packageName = "pino"; + version = "5.8.1"; + src = fetchurl { + url = "https://registry.npmjs.org/pino/-/pino-5.8.1.tgz"; + sha512 = "7bVFzUw3ffIfOM3t7MuQ9KsH+wX5bdGdQhGfccKgleoY7qG4FO3CmVSjywlFmmYGyMOISi1LDGC6JMEH7XkZJg=="; }; }; "pino-std-serializers-2.3.0" = { @@ -25062,6 +26665,15 @@ let sha512 = "klfGoOsP6sJH7ON796G4xoUSx2fkpFgKHO4YVVO2zmz31jR+etzc/QzGJILaOIiCD6HTCFgkPx+XN8nk+ruqPw=="; }; }; + "pirates-4.0.0" = { + name = "pirates"; + packageName = "pirates"; + version = "4.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/pirates/-/pirates-4.0.0.tgz"; + sha512 = "8t5BsXy1LUIjn3WWOlOuFDuKswhQb/tkak641lvBgmPOBUQHXveORtlMCp6OdPV1dtuTaEahKA8VNz6uLfKBtA=="; + }; + }; "pkg-dir-2.0.0" = { name = "pkg-dir"; packageName = "pkg-dir"; @@ -25071,6 +26683,15 @@ let sha1 = "f6d5d1109e19d63edf428e0bd57e12777615334b"; }; }; + "pkg-dir-3.0.0" = { + name = "pkg-dir"; + packageName = "pkg-dir"; + version = "3.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/pkg-dir/-/pkg-dir-3.0.0.tgz"; + sha512 = "/E57AYkoeQ25qkxMj5PBOVgF8Kiu/h7cYS30Z5+R7WaiCCBfLq58ZI/dSeaEKb9WVJV5n/03QwrN3IeWIFllvw=="; + }; + }; "pkg-up-2.0.0" = { name = "pkg-up"; packageName = "pkg-up"; @@ -25296,13 +26917,13 @@ let sha1 = "8dd70c4fe7c694109add784ffe80eacac1e7b28d"; }; }; - "portfinder-1.0.17" = { + "portfinder-1.0.19" = { name = "portfinder"; packageName = "portfinder"; - version = "1.0.17"; + version = "1.0.19"; src = fetchurl { - url = "https://registry.npmjs.org/portfinder/-/portfinder-1.0.17.tgz"; - sha512 = "syFcRIRzVI1BoEFOCaAiizwDolh1S1YXSodsVhncbhjzjZQulhczNRbqnUl9N31Q4dKGOXsNDqxC2BWBgSMqeQ=="; + url = "https://registry.npmjs.org/portfinder/-/portfinder-1.0.19.tgz"; + sha512 = "23aeQKW9KgHe6citUrG3r9HjeX6vls0h713TAa+CwTKZwNIr/pD2ApaxYF4Um3ZZyq4ar+Siv3+fhoHaIwSOSw=="; }; }; "posix-character-classes-0.1.1" = { @@ -25314,6 +26935,16 @@ let sha1 = "01eac0fe3b5af71a2a6c02feabb8c1fef7e00eab"; }; }; + "posix-getopt-git://github.com/anmonteiro/node-getopt#master" = { + name = "posix-getopt"; + packageName = "posix-getopt"; + version = "1.2.0"; + src = fetchgit { + url = "git://github.com/anmonteiro/node-getopt"; + rev = "a3123885e3559c9b70903948d6e5c34852520d74"; + sha256 = "0092766ac49279342f7d17677359880b44b245ad9d32237a11a5ea45cb0d03fa"; + }; + }; "postcss-6.0.23" = { name = "postcss"; packageName = "postcss"; @@ -25323,6 +26954,15 @@ let sha512 = "soOk1h6J3VMTZtVeVpv15/Hpdl2cBLX3CAw4TAbkpTJiNPk9YP/zWcD1ND+xEtvyuuvKzbxliTOIyvkSeSJ6ag=="; }; }; + "postcss-7.0.5" = { + name = "postcss"; + packageName = "postcss"; + version = "7.0.5"; + src = fetchurl { + url = "https://registry.npmjs.org/postcss/-/postcss-7.0.5.tgz"; + sha512 = "HBNpviAUFCKvEh7NZhw1e8MBPivRszIiUnhrJ+sBFVSYSqubrzwX3KG51mYgcRHX8j/cAgZJedONZcm5jTBdgQ=="; + }; + }; "prebuild-install-2.1.2" = { name = "prebuild-install"; packageName = "prebuild-install"; @@ -25386,6 +27026,15 @@ let sha1 = "815ed1f6ebc65926f865b310c0713bcb3315ce4b"; }; }; + "prettier-1.15.1" = { + name = "prettier"; + packageName = "prettier"; + version = "1.15.1"; + src = fetchurl { + url = "https://registry.npmjs.org/prettier/-/prettier-1.15.1.tgz"; + sha512 = "4rgV2hyc/5Pk0XHH4VjJWHRgVjgRbpMfLQjREAhHBtyW1UvTFkjJEsueGYNYYZd9mn97K+1qv0EBwm11zoaSgA=="; + }; + }; "prettier-bytes-1.0.4" = { name = "prettier-bytes"; packageName = "prettier-bytes"; @@ -25440,22 +27089,22 @@ let sha1 = "c438ca2ca33e3927671db4ab69c0e52f936a4f0f"; }; }; - "prisma-json-schema-0.1.1" = { + "prisma-json-schema-0.1.3" = { name = "prisma-json-schema"; packageName = "prisma-json-schema"; - version = "0.1.1"; + version = "0.1.3"; src = fetchurl { - url = "https://registry.npmjs.org/prisma-json-schema/-/prisma-json-schema-0.1.1.tgz"; - sha512 = "epi2cDTQu/xk//H79dqRIzqk9ZEEqgcvHR7M/UhG/9UcSYY3OP/tJKDj5AYk86Xt2p5muDp3+y8ZGVNGZVQgNw=="; + url = "https://registry.npmjs.org/prisma-json-schema/-/prisma-json-schema-0.1.3.tgz"; + sha512 = "XZrf2080oR81mY8/OC8al68HiwBm0nXlFE727JIia0ZbNqwuV4MyRYk6E0+OIa6/9KEYxZrcAmoBs3EW1cCvnA=="; }; }; - "prisma-yml-1.0.93" = { + "prisma-yml-1.20.0-beta.18" = { name = "prisma-yml"; packageName = "prisma-yml"; - version = "1.0.93"; + version = "1.20.0-beta.18"; src = fetchurl { - url = "https://registry.npmjs.org/prisma-yml/-/prisma-yml-1.0.93.tgz"; - sha512 = "np7VXqA4t+qhmn2GXGIOL19IMWSyrI1T8uJH8Lrla9uslvSxch6bzarYcQgKsc+sTL/g1zbvNgRl19cr/CUuNQ=="; + url = "https://registry.npmjs.org/prisma-yml/-/prisma-yml-1.20.0-beta.18.tgz"; + sha512 = "wI/lOQrD78de2+ZNzJlbEYcYiUANtpdyT0VzAS+YbF5+1/O+shOnpwYsBtjrVL5Er0RwMkwH7j+oZQM61ENBMQ=="; }; }; "prismjs-1.15.0" = { @@ -25512,6 +27161,15 @@ let sha1 = "1638d8a8e34c2f440a91db95ab9aeb677fc185cf"; }; }; + "process-exists-3.1.0" = { + name = "process-exists"; + packageName = "process-exists"; + version = "3.1.0"; + src = fetchurl { + url = "https://registry.npmjs.org/process-exists/-/process-exists-3.1.0.tgz"; + sha512 = "X11vso1oNLtyDa2j8fsMol2fph1+5PoQ4vpEc1it/rM8eLuRTmrmTg4jfn82WhNur241AYitgjKCgmlgMRZesw=="; + }; + }; "process-nextick-args-1.0.7" = { name = "process-nextick-args"; packageName = "process-nextick-args"; @@ -25535,17 +27193,17 @@ let packageName = "progress"; version = "1.1.8"; src = fetchurl { - url = "https://registry.npmjs.org/progress/-/progress-1.1.8.tgz"; + url = "http://registry.npmjs.org/progress/-/progress-1.1.8.tgz"; sha1 = "e260c78f6161cdd9b0e56cc3e0a85de17c7a57be"; }; }; - "progress-2.0.0" = { + "progress-2.0.1" = { name = "progress"; packageName = "progress"; - version = "2.0.0"; + version = "2.0.1"; src = fetchurl { - url = "https://registry.npmjs.org/progress/-/progress-2.0.0.tgz"; - sha1 = "8a1be366bf8fc23db2bd23f10c6fe920b4389d1f"; + url = "https://registry.npmjs.org/progress/-/progress-2.0.1.tgz"; + sha512 = "OE+a6vzqazc+K6LxJrX5UPyKFvGnL5CYmq2jFGNIBWHpc4QyE49/YOumcrpQFJpfejmvRtbJzgO1zPmMCqlbBg=="; }; }; "progress-string-1.2.2" = { @@ -25746,13 +27404,13 @@ let sha512 = "SmjEuAf3hc3h3rWZ6V1YaaQw2MNJWK848gLJgzx/sefOJdNLujKinJVXIS0q2cBQpQn2Q32TinawZyDZPzm4kQ=="; }; }; - "protoduck-5.0.0" = { + "protoduck-5.0.1" = { name = "protoduck"; packageName = "protoduck"; - version = "5.0.0"; + version = "5.0.1"; src = fetchurl { - url = "https://registry.npmjs.org/protoduck/-/protoduck-5.0.0.tgz"; - sha512 = "agsGWD8/RZrS4ga6v82Fxb0RHIS2RZnbsSue6A9/MBRhB/jcqOANAMNrqM9900b8duj+Gx+T/JMy5IowDoO/hQ=="; + url = "https://registry.npmjs.org/protoduck/-/protoduck-5.0.1.tgz"; + sha512 = "WxoCeDCoCBY55BMvj4cAEjdVUFGRWed9ZxPlqTKYyw1nDDTQ4pqmnIMAGfJlg7Dx35uB/M+PHJPTmGOvaCaPTg=="; }; }; "proxy-addr-1.0.10" = { @@ -25764,15 +27422,6 @@ let sha1 = "0d40a82f801fc355567d2ecb65efe3f077f121c5"; }; }; - "proxy-addr-1.1.5" = { - name = "proxy-addr"; - packageName = "proxy-addr"; - version = "1.1.5"; - src = fetchurl { - url = "https://registry.npmjs.org/proxy-addr/-/proxy-addr-1.1.5.tgz"; - sha1 = "71c0ee3b102de3f202f3b64f608d173fcba1a918"; - }; - }; "proxy-addr-2.0.4" = { name = "proxy-addr"; packageName = "proxy-addr"; @@ -25836,6 +27485,15 @@ let sha1 = "d3fc114ba06995a45ec6893f484ceb1d78f5f476"; }; }; + "ps-list-4.1.0" = { + name = "ps-list"; + packageName = "ps-list"; + version = "4.1.0"; + src = fetchurl { + url = "https://registry.npmjs.org/ps-list/-/ps-list-4.1.0.tgz"; + sha512 = "DSpMj8PI5W7v2G4+rE+BymTKZPjlu6t/M1N6rPAa6Hwn+/e8jDmFJaq8/kpoGCvwd75g2h5DbjF2MduOMNyrsQ=="; + }; + }; "ps-tree-0.0.3" = { name = "ps-tree"; packageName = "ps-tree"; @@ -26007,15 +27665,6 @@ let sha1 = "7017a984c3b834de77bac38c10b776f22dfc1843"; }; }; - "pull-abortable-4.1.1" = { - name = "pull-abortable"; - packageName = "pull-abortable"; - version = "4.1.1"; - src = fetchurl { - url = "https://registry.npmjs.org/pull-abortable/-/pull-abortable-4.1.1.tgz"; - sha1 = "b3ad5aefb4116b25916d26db89393ac98d0dcea1"; - }; - }; "pull-block-filter-1.0.0" = { name = "pull-block-filter"; packageName = "pull-block-filter"; @@ -26241,13 +27890,13 @@ let sha1 = "5f99af15e8846d48ecf625edc248ec2cf57f6b0d"; }; }; - "pull-inactivity-2.1.2" = { + "pull-inactivity-2.1.3" = { name = "pull-inactivity"; packageName = "pull-inactivity"; - version = "2.1.2"; + version = "2.1.3"; src = fetchurl { - url = "https://registry.npmjs.org/pull-inactivity/-/pull-inactivity-2.1.2.tgz"; - sha1 = "37a3d6ebbfac292cd435f5e481e5074c8c1fad75"; + url = "https://registry.npmjs.org/pull-inactivity/-/pull-inactivity-2.1.3.tgz"; + sha512 = "swJ/jwkIN/O1bQCE3iY7Xy9r3gYuJ50MXaxZilw/HIduAy4tJu+vcz2/If0L+xNK7Ku/FfjtVbTpRTe7sf3hmA=="; }; }; "pull-kvdiff-0.0.0" = { @@ -26394,13 +28043,13 @@ let sha1 = "95d0c60ce6ea9c8bab8ca0b16e1f518352ed4e4f"; }; }; - "pull-sort-1.0.1" = { + "pull-sort-1.0.2" = { name = "pull-sort"; packageName = "pull-sort"; - version = "1.0.1"; + version = "1.0.2"; src = fetchurl { - url = "https://registry.npmjs.org/pull-sort/-/pull-sort-1.0.1.tgz"; - sha1 = "a8ab0c70c86f45343c9accc939fc42769ad3dc6d"; + url = "https://registry.npmjs.org/pull-sort/-/pull-sort-1.0.2.tgz"; + sha512 = "jGcAHMP+0Le+bEIhSODlbNNd3jW+S6XrXOlhVzfcKU5HQZjP92OzQSgHHSlwvWRsiTWi+UGgbFpL/5gGgmFoVQ=="; }; }; "pull-stream-2.27.0" = { @@ -26439,22 +28088,13 @@ let sha512 = "hJn4POeBrkttshdNl0AoSCVjMVSuBwuHocMerUdoZ2+oIUzrWHFTwJMlbHND7OiKLVgvz6TFj8ZUVywUMXccbw=="; }; }; - "pull-stream-to-stream-1.3.4" = { - name = "pull-stream-to-stream"; - packageName = "pull-stream-to-stream"; - version = "1.3.4"; - src = fetchurl { - url = "https://registry.npmjs.org/pull-stream-to-stream/-/pull-stream-to-stream-1.3.4.tgz"; - sha1 = "3f81d8216bd18d2bfd1a198190471180e2738399"; - }; - }; - "pull-stringify-1.2.2" = { + "pull-stringify-2.0.0" = { name = "pull-stringify"; packageName = "pull-stringify"; - version = "1.2.2"; + version = "2.0.0"; src = fetchurl { - url = "http://registry.npmjs.org/pull-stringify/-/pull-stringify-1.2.2.tgz"; - sha1 = "5a1c34e0075faf2f2f6d46004e36dccd33bd7c7c"; + url = "http://registry.npmjs.org/pull-stringify/-/pull-stringify-2.0.0.tgz"; + sha1 = "22ba31da95af0888e0fb559238b1fa915a6a5b64"; }; }; "pull-through-1.0.18" = { @@ -26772,24 +28412,6 @@ let sha1 = "13e26d28ad6b0ffaa91312cd3bf708ed351e7233"; }; }; - "qs-6.5.0" = { - name = "qs"; - packageName = "qs"; - version = "6.5.0"; - src = fetchurl { - url = "https://registry.npmjs.org/qs/-/qs-6.5.0.tgz"; - sha512 = "fjVFjW9yhqMhVGwRExCXLhJKrLlkYSaxNWdyc9rmHlrVZbk35YHH312dFd7191uQeXkI3mKLZTIbSvIeFwFemg=="; - }; - }; - "qs-6.5.1" = { - name = "qs"; - packageName = "qs"; - version = "6.5.1"; - src = fetchurl { - url = "https://registry.npmjs.org/qs/-/qs-6.5.1.tgz"; - sha512 = "eRzhrN1WSINYCDCbrz796z37LOe3m5tmW7RQf6oBntukAG1nmovJvhnwHHRMAfeoItc1m2Hk02WER2aQ/iqs+A=="; - }; - }; "qs-6.5.2" = { name = "qs"; packageName = "qs"; @@ -26844,13 +28466,13 @@ let sha1 = "9ec61f79049875707d69414596fd907a4d711e73"; }; }; - "quick-format-unescaped-3.0.0" = { + "quick-format-unescaped-3.0.1" = { name = "quick-format-unescaped"; packageName = "quick-format-unescaped"; - version = "3.0.0"; + version = "3.0.1"; src = fetchurl { - url = "https://registry.npmjs.org/quick-format-unescaped/-/quick-format-unescaped-3.0.0.tgz"; - sha512 = "XmIOc07VM2kPm6m3j/U6jgxyUgDm2Rgh2c1PPy0JUHoQRdoh86hOym0bHyF6G1T6sn+N5lildhvl/T59H5KVyA=="; + url = "https://registry.npmjs.org/quick-format-unescaped/-/quick-format-unescaped-3.0.1.tgz"; + sha512 = "Tnk4iJQ8x3V8ml3x9sLIf4tSDaVB9OJY/5gOrnxgK63CXKphhn8oYOPI4tqnXPQcZ3tCv7GFjeoYY5h6UAvuzg=="; }; }; "quick-lru-1.1.0" = { @@ -26889,6 +28511,24 @@ let sha1 = "8ccfd014d0f9608630dd73c19b8e4b057754a6a6"; }; }; + "railroad-diagrams-1.0.0" = { + name = "railroad-diagrams"; + packageName = "railroad-diagrams"; + version = "1.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/railroad-diagrams/-/railroad-diagrams-1.0.0.tgz"; + sha1 = "eb7e6267548ddedfb899c1b90e57374559cddb7e"; + }; + }; + "randexp-0.4.6" = { + name = "randexp"; + packageName = "randexp"; + version = "0.4.6"; + src = fetchurl { + url = "https://registry.npmjs.org/randexp/-/randexp-0.4.6.tgz"; + sha512 = "80WNmd9DA0tmZrw9qQa62GPPWfuXJknrmVmLcxvq4uZBdYqb1wYoKTmnlGUchvVWe0XiLupYkBoXVOxz3C8DYQ=="; + }; + }; "random-access-file-2.0.1" = { name = "random-access-file"; packageName = "random-access-file"; @@ -26934,13 +28574,13 @@ let sha1 = "f7d97d92dee6665ec5f6da08c7f963cad4b2ac99"; }; }; - "randomatic-3.1.0" = { + "randomatic-3.1.1" = { name = "randomatic"; packageName = "randomatic"; - version = "3.1.0"; + version = "3.1.1"; src = fetchurl { - url = "https://registry.npmjs.org/randomatic/-/randomatic-3.1.0.tgz"; - sha512 = "KnGPVE0lo2WoXxIZ7cPR8YBpiol4gsSuOwDSg410oHh80ZMp5EiypNqL2K4Z77vJn6lB5rap7IkAmcUlalcnBQ=="; + url = "https://registry.npmjs.org/randomatic/-/randomatic-3.1.1.tgz"; + sha512 = "TuDE5KxZ0J461RVjrJZCJc+J+zCkTb1MbH9AQUq68sMhOMcy9jLcb3BrZKgp9q9Ncltdg4QVqWrH02W2EFFVYw=="; }; }; "randombytes-2.0.6" = { @@ -27042,15 +28682,6 @@ let sha1 = "adfeace2e4fb3098058014d08c072dcc59758774"; }; }; - "raw-body-2.3.2" = { - name = "raw-body"; - packageName = "raw-body"; - version = "2.3.2"; - src = fetchurl { - url = "https://registry.npmjs.org/raw-body/-/raw-body-2.3.2.tgz"; - sha1 = "bcd60c77d3eb93cde0050295c3f379389bc88f89"; - }; - }; "raw-body-2.3.3" = { name = "raw-body"; packageName = "raw-body"; @@ -27060,13 +28691,13 @@ let sha512 = "9esiElv1BrZoI3rCDuOuKCBRbuApGGaDPQfjSflGxdy4oyzqghxu6klEkkVIvBje+FF0BX9coEv8KqW6X/7njw=="; }; }; - "raw-socket-1.6.3" = { + "raw-socket-1.6.4" = { name = "raw-socket"; packageName = "raw-socket"; - version = "1.6.3"; + version = "1.6.4"; src = fetchurl { - url = "https://registry.npmjs.org/raw-socket/-/raw-socket-1.6.3.tgz"; - sha512 = "OcplcSbIIyEZxW6YFsqbvyrUrqvwFNmA4jhA9ZmMhquLrd9VBzIrFRRZ2qaD98UpyVk/VYJLemO8haECHMmEgQ=="; + url = "https://registry.npmjs.org/raw-socket/-/raw-socket-1.6.4.tgz"; + sha512 = "ab/By3tp0gTDzwEJxgKUv+uIma0JFVnJElNMKNAqNiET+GQ2VAfR6eUVfnm0yRG/vxGu8gO2BYWhR30sQOTebg=="; }; }; "rc-0.4.0" = { @@ -27195,6 +28826,15 @@ let sha1 = "9cbc686978fee65d16c00e2b19c237fcf6e38389"; }; }; + "read-pkg-4.0.1" = { + name = "read-pkg"; + packageName = "read-pkg"; + version = "4.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/read-pkg/-/read-pkg-4.0.1.tgz"; + sha1 = "963625378f3e1c4d48c85872b5a6ec7d5d093237"; + }; + }; "read-pkg-up-1.0.1" = { name = "read-pkg-up"; packageName = "read-pkg-up"; @@ -27438,6 +29078,24 @@ let sha1 = "e0c93542c574521bea13df0f9488ed82ab77c5da"; }; }; + "regenerate-1.4.0" = { + name = "regenerate"; + packageName = "regenerate"; + version = "1.4.0"; + src = fetchurl { + url = "https://registry.npmjs.org/regenerate/-/regenerate-1.4.0.tgz"; + sha512 = "1G6jJVDWrt0rK99kBjvEtziZNCICAuvIPkSiUFIQxVP06RCVpq3dmDo2oi6ABpYaDYaTRr67BEhL8r1wgEZZKg=="; + }; + }; + "regenerate-unicode-properties-7.0.0" = { + name = "regenerate-unicode-properties"; + packageName = "regenerate-unicode-properties"; + version = "7.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/regenerate-unicode-properties/-/regenerate-unicode-properties-7.0.0.tgz"; + sha512 = "s5NGghCE4itSlUS+0WUj88G6cfMVMmH8boTPNvABf8od+2dhT9WDlWu8n01raQAJZMOK8Ch6jSexaRO7swd6aw=="; + }; + }; "regenerator-runtime-0.10.5" = { name = "regenerator-runtime"; packageName = "regenerator-runtime"; @@ -27474,6 +29132,15 @@ let sha1 = "d33eb95d0d2001a4be39659707c51b0cb71ce029"; }; }; + "regenerator-transform-0.13.3" = { + name = "regenerator-transform"; + packageName = "regenerator-transform"; + version = "0.13.3"; + src = fetchurl { + url = "https://registry.npmjs.org/regenerator-transform/-/regenerator-transform-0.13.3.tgz"; + sha512 = "5ipTrZFSq5vU2YoGoww4uaRVAK4wyYC4TSICibbfEPOruUu8FFP7ErV0BjmbIOEpn3O/k9na9UEdYR/3m7N6uA=="; + }; + }; "regex-cache-0.4.4" = { name = "regex-cache"; packageName = "regex-cache"; @@ -27519,6 +29186,15 @@ let sha512 = "lv0M6+TkDVniA3aD1Eg0DVpfU/booSu7Eev3TDO/mZKHBfVjgCGTV4t4buppESEYDtkArYFOxTJWv6S5C+iaNw=="; }; }; + "regexpu-core-4.2.0" = { + name = "regexpu-core"; + packageName = "regexpu-core"; + version = "4.2.0"; + src = fetchurl { + url = "https://registry.npmjs.org/regexpu-core/-/regexpu-core-4.2.0.tgz"; + sha512 = "Z835VSnJJ46CNBttalHD/dB+Sj2ezmY6Xp38npwU87peK6mqOzOpV8eYktdkLTEkzzD+JsTcxd84ozd8I14+rw=="; + }; + }; "registry-auth-token-3.3.2" = { name = "registry-auth-token"; packageName = "registry-auth-token"; @@ -27537,6 +29213,24 @@ let sha1 = "3d4ef870f73dde1d77f0cf9a381432444e174942"; }; }; + "regjsgen-0.4.0" = { + name = "regjsgen"; + packageName = "regjsgen"; + version = "0.4.0"; + src = fetchurl { + url = "https://registry.npmjs.org/regjsgen/-/regjsgen-0.4.0.tgz"; + sha512 = "X51Lte1gCYUdlwhF28+2YMO0U6WeN0GLpgpA7LK7mbdDnkQYiwvEpmpe0F/cv5L14EbxgrdayAG3JETBv0dbXA=="; + }; + }; + "regjsparser-0.3.0" = { + name = "regjsparser"; + packageName = "regjsparser"; + version = "0.3.0"; + src = fetchurl { + url = "https://registry.npmjs.org/regjsparser/-/regjsparser-0.3.0.tgz"; + sha512 = "zza72oZBBHzt64G7DxdqrOo/30bhHkwMUoT0WqfGu98XLd7N+1tsy5MJ96Bk4MD0y74n629RhmrGW6XlnLLwCA=="; + }; + }; "reinterval-1.1.0" = { name = "reinterval"; packageName = "reinterval"; @@ -27587,7 +29281,7 @@ let packageName = "remark"; version = "3.2.3"; src = fetchurl { - url = "https://registry.npmjs.org/remark/-/remark-3.2.3.tgz"; + url = "http://registry.npmjs.org/remark/-/remark-3.2.3.tgz"; sha1 = "802a38c3aa98c9e1e3ea015eeba211d27cb65e1f"; }; }; @@ -27843,13 +29537,13 @@ let sha1 = "5281770f68e0c9719e5163fd3fab482215f4fda5"; }; }; - "requestretry-3.0.1" = { + "requestretry-3.0.2" = { name = "requestretry"; packageName = "requestretry"; - version = "3.0.1"; + version = "3.0.2"; src = fetchurl { - url = "https://registry.npmjs.org/requestretry/-/requestretry-3.0.1.tgz"; - sha512 = "vJUdB4xucpx+Hc5N1hV44/fHmT4ovhrwGWfG9MtZR6AeO1G350IqPUXJL4gfZND6RtqoSqB+Zs9EeCsMizYf9A=="; + url = "https://registry.npmjs.org/requestretry/-/requestretry-3.0.2.tgz"; + sha512 = "3UXO4EOBwRFXm2AeAElyhM3bmMb57jZi5QC2httyXXSyT49O6o+AdzUZRA/vj5O2tE6xbdpDygRZb5Q19Q7lCA=="; }; }; "require-directory-2.1.1" = { @@ -27893,7 +29587,7 @@ let packageName = "require-uncached"; version = "1.0.3"; src = fetchurl { - url = "https://registry.npmjs.org/require-uncached/-/require-uncached-1.0.3.tgz"; + url = "http://registry.npmjs.org/require-uncached/-/require-uncached-1.0.3.tgz"; sha1 = "4e0d56d6c9662fd31e43011c4b95aa49955421d3"; }; }; @@ -27960,6 +29654,15 @@ let sha1 = "00a9f7387556e27038eae232caa372a6a59b665a"; }; }; + "resolve-dependencies-2.1.1" = { + name = "resolve-dependencies"; + packageName = "resolve-dependencies"; + version = "2.1.1"; + src = fetchurl { + url = "https://registry.npmjs.org/resolve-dependencies/-/resolve-dependencies-2.1.1.tgz"; + sha512 = "Qmd1eEp9CmAZZx1e3scW2Cof0kauO3Y6jKMoZIm8RN/BWwkfhUdfLV+qpb7+ONITVmqWFUdHb6r62HSlmAMv5Q=="; + }; + }; "resolve-dir-1.0.1" = { name = "resolve-dir"; packageName = "resolve-dir"; @@ -28055,7 +29758,7 @@ let packageName = "restify"; version = "4.0.3"; src = fetchurl { - url = "https://registry.npmjs.org/restify/-/restify-4.0.3.tgz"; + url = "http://registry.npmjs.org/restify/-/restify-4.0.3.tgz"; sha1 = "e1e5b7ad9d4f6aeacd20e28f44a045f26c146dbc"; }; }; @@ -28257,6 +29960,78 @@ let sha1 = "f33fe9cfb52bbfd520aa18323bc65db110a1b76c"; }; }; + "rollup-0.67.0" = { + name = "rollup"; + packageName = "rollup"; + version = "0.67.0"; + src = fetchurl { + url = "https://registry.npmjs.org/rollup/-/rollup-0.67.0.tgz"; + sha512 = "p34buXxArhwv9ieTdHvdhdo65Cbig68s/Z8llbZuiX5e+3zCqnBF02Ck9IH0tECrmvvrJVMws32Ry84hTnS1Tw=="; + }; + }; + "rollup-plugin-babel-4.0.3" = { + name = "rollup-plugin-babel"; + packageName = "rollup-plugin-babel"; + version = "4.0.3"; + src = fetchurl { + url = "https://registry.npmjs.org/rollup-plugin-babel/-/rollup-plugin-babel-4.0.3.tgz"; + sha512 = "/PP0MgbPQyRywI4zRIJim6ySjTcOLo4kQbEbROqp9kOR3kHC3FeU++QpBDZhS2BcHtJTVZMVbBV46flbBN5zxQ=="; + }; + }; + "rollup-plugin-babel-minify-6.1.1" = { + name = "rollup-plugin-babel-minify"; + packageName = "rollup-plugin-babel-minify"; + version = "6.1.1"; + src = fetchurl { + url = "https://registry.npmjs.org/rollup-plugin-babel-minify/-/rollup-plugin-babel-minify-6.1.1.tgz"; + sha512 = "MX0lqOHp1vHd7WbHTK5OG679msgPxzGzYf4VBEg6kKptO05fgheCbN51i3EoFYSa+8/VtNDjPc23iDdZfhO2uw=="; + }; + }; + "rollup-plugin-commonjs-9.2.0" = { + name = "rollup-plugin-commonjs"; + packageName = "rollup-plugin-commonjs"; + version = "9.2.0"; + src = fetchurl { + url = "https://registry.npmjs.org/rollup-plugin-commonjs/-/rollup-plugin-commonjs-9.2.0.tgz"; + sha512 = "0RM5U4Vd6iHjL6rLvr3lKBwnPsaVml+qxOGaaNUWN1lSq6S33KhITOfHmvxV3z2vy9Mk4t0g4rNlVaJJsNQPWA=="; + }; + }; + "rollup-plugin-node-resolve-3.4.0" = { + name = "rollup-plugin-node-resolve"; + packageName = "rollup-plugin-node-resolve"; + version = "3.4.0"; + src = fetchurl { + url = "https://registry.npmjs.org/rollup-plugin-node-resolve/-/rollup-plugin-node-resolve-3.4.0.tgz"; + sha512 = "PJcd85dxfSBWih84ozRtBkB731OjXk0KnzN0oGp7WOWcarAFkVa71cV5hTJg2qpVsV2U8EUwrzHP3tvy9vS3qg=="; + }; + }; + "rollup-plugin-replace-2.1.0" = { + name = "rollup-plugin-replace"; + packageName = "rollup-plugin-replace"; + version = "2.1.0"; + src = fetchurl { + url = "https://registry.npmjs.org/rollup-plugin-replace/-/rollup-plugin-replace-2.1.0.tgz"; + sha512 = "SxrAIgpH/B5/W4SeULgreOemxcpEgKs2gcD42zXw50bhqGWmcnlXneVInQpAqzA/cIly4bJrOpeelmB9p4YXSQ=="; + }; + }; + "rollup-plugin-uglify-3.0.0" = { + name = "rollup-plugin-uglify"; + packageName = "rollup-plugin-uglify"; + version = "3.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/rollup-plugin-uglify/-/rollup-plugin-uglify-3.0.0.tgz"; + sha512 = "dehLu9eRRoV4l09aC+ySntRw1OAfoyKdbk8Nelblj03tHoynkSybqyEpgavemi1LBOH6S1vzI58/mpxkZIe1iQ=="; + }; + }; + "rollup-pluginutils-2.3.3" = { + name = "rollup-pluginutils"; + packageName = "rollup-pluginutils"; + version = "2.3.3"; + src = fetchurl { + url = "https://registry.npmjs.org/rollup-pluginutils/-/rollup-pluginutils-2.3.3.tgz"; + sha512 = "2XZwja7b6P5q4RZ5FhyX1+f46xi1Z3qBKigLRZ6VTZjwbN0K1IFGMlwm06Uu0Emcre2Z63l77nq/pzn+KxIEoA=="; + }; + }; "root-2.0.0" = { name = "root"; packageName = "root"; @@ -28284,13 +30059,22 @@ let sha1 = "6f04063a2d04eba3303a1bbc6765eef63037cf3d"; }; }; - "router-1.3.3" = { + "router-2.0.0-alpha.1" = { name = "router"; packageName = "router"; - version = "1.3.3"; + version = "2.0.0-alpha.1"; src = fetchurl { - url = "https://registry.npmjs.org/router/-/router-1.3.3.tgz"; - sha1 = "c142f6b5ea4d6b3359022ca95b6580bd217f89cf"; + url = "https://registry.npmjs.org/router/-/router-2.0.0-alpha.1.tgz"; + sha512 = "fz/T/qLkJM6RTtbqGqA1+uZ88ejqJoPyKeJAeXPYjebA7HzV/UyflH4gXWqW/Y6SERnp4kDwNARjqy6se3PcOw=="; + }; + }; + "rss-parser-3.5.3" = { + name = "rss-parser"; + packageName = "rss-parser"; + version = "3.5.3"; + src = fetchurl { + url = "https://registry.npmjs.org/rss-parser/-/rss-parser-3.5.3.tgz"; + sha512 = "oByqqKTuB6tCg/4UTPXUpJmG4Wr+H72qsBcSnBZM9nH1NhjV8lXzx8uKibN9Sq+mZwwZQyOitjoQvZ/ePsttKA=="; }; }; "rsvp-3.6.2" = { @@ -28428,6 +30212,15 @@ let sha512 = "JTWmoY9tWCs7zvIk/CvRjhjGaOd+OVBM987mxFo+OW66cGpdKjZcpmc74ES1sB//7Kl/PAe8+wEakuhG4pcgOw=="; }; }; + "s3-stream-upload-2.0.2" = { + name = "s3-stream-upload"; + packageName = "s3-stream-upload"; + version = "2.0.2"; + src = fetchurl { + url = "https://registry.npmjs.org/s3-stream-upload/-/s3-stream-upload-2.0.2.tgz"; + sha1 = "60342f12d4aa06ea8f389fb761a5393aedca017f"; + }; + }; "safe-buffer-5.0.1" = { name = "safe-buffer"; packageName = "safe-buffer"; @@ -28469,7 +30262,7 @@ let packageName = "safe-regex"; version = "1.1.0"; src = fetchurl { - url = "https://registry.npmjs.org/safe-regex/-/safe-regex-1.1.0.tgz"; + url = "http://registry.npmjs.org/safe-regex/-/safe-regex-1.1.0.tgz"; sha1 = "40a3669f3b077d1e943d44629e157dd48023bf2e"; }; }; @@ -28590,6 +30383,15 @@ let sha512 = "MuCAyrGZcTLfQoH2XoBlQ8C6bzwN88XT/0slOGz0pn8+gIP85BOAfYa44ZXQUTOwRwPU0QvgU+V+OSajl/59Xg=="; }; }; + "sec-1.0.0" = { + name = "sec"; + packageName = "sec"; + version = "1.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/sec/-/sec-1.0.0.tgz"; + sha1 = "033d60a3ad20ecf2e00940d14f97823465774335"; + }; + }; "secret-handshake-1.1.14" = { name = "secret-handshake"; packageName = "secret-handshake"; @@ -28617,13 +30419,13 @@ let sha1 = "f0c82d98a3b139a8776a8808050b824431087fca"; }; }; - "secure-scuttlebutt-18.5.0" = { + "secure-scuttlebutt-18.6.0" = { name = "secure-scuttlebutt"; packageName = "secure-scuttlebutt"; - version = "18.5.0"; + version = "18.6.0"; src = fetchurl { - url = "https://registry.npmjs.org/secure-scuttlebutt/-/secure-scuttlebutt-18.5.0.tgz"; - sha512 = "b50xp0XAWtd6y4ygw2RRgDxaFNgGqC7XahRt/mC4XhiCe6HoTjpt6j07HVnTDcRtLzNiCPKlFJnYySFTFay2lQ=="; + url = "https://registry.npmjs.org/secure-scuttlebutt/-/secure-scuttlebutt-18.6.0.tgz"; + sha512 = "gKQ8tJVnxd8WJEMusXyVkcHGZHoYB+F+TuQYisFYlhAntqlKBExdN+IT6DjVmHev7DvxE68PVtR8Ijqme93d2w=="; }; }; "seek-bzip-1.0.5" = { @@ -28860,15 +30662,6 @@ let sha1 = "765e7607c8055452bba6f0b052595350986036de"; }; }; - "send-0.15.6" = { - name = "send"; - packageName = "send"; - version = "0.15.6"; - src = fetchurl { - url = "https://registry.npmjs.org/send/-/send-0.15.6.tgz"; - sha1 = "20f23a9c925b762ab82705fe2f9db252ace47e34"; - }; - }; "send-0.16.2" = { name = "send"; packageName = "send"; @@ -28995,15 +30788,6 @@ let sha1 = "ce5a6ecd3101fed5ec09827dac22a9c29bfb0535"; }; }; - "serve-static-1.12.6" = { - name = "serve-static"; - packageName = "serve-static"; - version = "1.12.6"; - src = fetchurl { - url = "https://registry.npmjs.org/serve-static/-/serve-static-1.12.6.tgz"; - sha1 = "b973773f63449934da54e5beba5e31d9f4211577"; - }; - }; "serve-static-1.13.2" = { name = "serve-static"; packageName = "serve-static"; @@ -29085,15 +30869,6 @@ let sha1 = "290cbb232e306942d7d7ea9b83732ab7856f8285"; }; }; - "setprototypeof-1.0.3" = { - name = "setprototypeof"; - packageName = "setprototypeof"; - version = "1.0.3"; - src = fetchurl { - url = "https://registry.npmjs.org/setprototypeof/-/setprototypeof-1.0.3.tgz"; - sha1 = "66567e37043eeb4f04d91bd658c0cbefb55b8e04"; - }; - }; "setprototypeof-1.1.0" = { name = "setprototypeof"; packageName = "setprototypeof"; @@ -29229,13 +31004,13 @@ let sha512 = "vFwSUfQvqybiICwZY5+DAWIPLKsWO31Q91JSKl3UYv+K5c2QRPzn0qzec6QPu1Qc9eHYItiP3NdJqNVqetYAww=="; }; }; - "shortid-2.2.13" = { + "shortid-2.2.14" = { name = "shortid"; packageName = "shortid"; - version = "2.2.13"; + version = "2.2.14"; src = fetchurl { - url = "https://registry.npmjs.org/shortid/-/shortid-2.2.13.tgz"; - sha512 = "dBuNnQGKrJNfjunmXI2X7bl1gnMO4PwbNxrTzO1JvilODmL7WyyCtA+DYxe9XunLXmxmgzFIvKPQ6XRAQrr46Q=="; + url = "https://registry.npmjs.org/shortid/-/shortid-2.2.14.tgz"; + sha512 = "4UnZgr9gDdA1kaKj/38IiudfC3KHKhDc1zi/HSxd9FQDR0VLwH3/y79tZJLsVYPsJgIjeHjqIWaWVRJUj9qZOQ=="; }; }; "shush-1.0.0" = { @@ -29337,13 +31112,13 @@ let sha512 = "Wvre/Jq5vgoz31Z9stYWPLn0PqRqmBDpFSdypAnHu5AvRVCYPRYGnvryNLiXu8GOBNDH82J2FRHUGMjjHUpXFw=="; }; }; - "simple-git-1.105.0" = { + "simple-git-1.107.0" = { name = "simple-git"; packageName = "simple-git"; - version = "1.105.0"; + version = "1.107.0"; src = fetchurl { - url = "https://registry.npmjs.org/simple-git/-/simple-git-1.105.0.tgz"; - sha512 = "ZrGcCPRIKCm6Q8gNJ+gx+leHqaokKpXae6K9lZpVD4sfeA2/rVvxcIR4KVVujNOmA6wHE2xaQ0GQWuIY88o6pA=="; + url = "https://registry.npmjs.org/simple-git/-/simple-git-1.107.0.tgz"; + sha512 = "t4OK1JRlp4ayKRfcW6owrWcRVLyHRUlhGd0uN6ZZTqfDq8a5XpcUdOKiGRNobHEuMtNqzp0vcJNvhYWwh5PsQA=="; }; }; "simple-lru-cache-0.0.2" = { @@ -29531,7 +31306,7 @@ let packageName = "slice-ansi"; version = "0.0.4"; src = fetchurl { - url = "https://registry.npmjs.org/slice-ansi/-/slice-ansi-0.0.4.tgz"; + url = "http://registry.npmjs.org/slice-ansi/-/slice-ansi-0.0.4.tgz"; sha1 = "edbf8903f66f7ce2f8eafd6ceed65e264c831b35"; }; }; @@ -29544,6 +31319,15 @@ let sha512 = "POqxBK6Lb3q6s047D/XsDVNPnF9Dl8JSaqe9h9lURl0OdNqy/ujDrOiIHtsqXMGbWWTIomRzAMaTyawAU//Reg=="; }; }; + "slice-ansi-2.0.0" = { + name = "slice-ansi"; + packageName = "slice-ansi"; + version = "2.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/slice-ansi/-/slice-ansi-2.0.0.tgz"; + sha512 = "4j2WTWjp3GsZ+AOagyzVbzp4vWGtZ0hEZ/gDY/uTvm6MTxUfTUIsnMIFb1bn8o0RuXiqUw15H1bue8f22Vw2oQ=="; + }; + }; "sliced-0.0.3" = { name = "sliced"; packageName = "sliced"; @@ -29684,7 +31468,7 @@ let packageName = "sntp"; version = "0.1.4"; src = fetchurl { - url = "https://registry.npmjs.org/sntp/-/sntp-0.1.4.tgz"; + url = "http://registry.npmjs.org/sntp/-/sntp-0.1.4.tgz"; sha1 = "5ef481b951a7b29affdf4afd7f26838fc1120f84"; }; }; @@ -29693,7 +31477,7 @@ let packageName = "sntp"; version = "1.0.9"; src = fetchurl { - url = "https://registry.npmjs.org/sntp/-/sntp-1.0.9.tgz"; + url = "http://registry.npmjs.org/sntp/-/sntp-1.0.9.tgz"; sha1 = "6541184cc90aeea6c6e7b35e2659082443c66198"; }; }; @@ -29706,13 +31490,22 @@ let sha512 = "FL1b58BDrqS3A11lJ0zEdnJ3UOKqVxawAkF3k7F0CVN7VQ34aZrV+G8BZ1WC9ZL7NyrwsW0oviwsWDgRuVYtJg=="; }; }; - "snyk-1.103.4" = { + "snyk-1.103.2" = { + name = "snyk"; + packageName = "snyk"; + version = "1.103.2"; + src = fetchurl { + url = "https://registry.npmjs.org/snyk/-/snyk-1.103.2.tgz"; + sha512 = "rmMsNW94SQdmWQEtVDW1hiGKb3r7Gx1hVb0bTuK9mCm4/lHGmyuAG7QYdcwdhMrhGjg7yQDWCEXorEnq2JLs7Q=="; + }; + }; + "snyk-1.108.2" = { name = "snyk"; packageName = "snyk"; - version = "1.103.4"; + version = "1.108.2"; src = fetchurl { - url = "https://registry.npmjs.org/snyk/-/snyk-1.103.4.tgz"; - sha512 = "ynLlsLDjAkzymd0qi1il6f34S4oNTfIgvFCFvkYxvqfBkedfOoDQT4TLU8gi+55MGM6iornf2iefC2FW92BwnQ=="; + url = "https://registry.npmjs.org/snyk/-/snyk-1.108.2.tgz"; + sha512 = "VfSHSRj4ISWf4EfySTdAVqUWnDspoFUaGs4uGp7FIbjZb35+JPaQ/hqgWKcDal+ZwTtzQvxKAdPsB3WUCBoSKg=="; }; }; "snyk-config-2.2.0" = { @@ -29733,6 +31526,15 @@ let sha512 = "QqKq2bGdnf1L2PNGQrHoqcoaV/PIlJv1qjKIzwA93gfhToKGkgJ31oPXwfef/l9N+ui0Y44c4POBHFbFf8PlJw=="; }; }; + "snyk-docker-plugin-1.12.2" = { + name = "snyk-docker-plugin"; + packageName = "snyk-docker-plugin"; + version = "1.12.2"; + src = fetchurl { + url = "https://registry.npmjs.org/snyk-docker-plugin/-/snyk-docker-plugin-1.12.2.tgz"; + sha512 = "8bEn6tDSXPtNS6d1XRM6CSRMwM0bI3N0vRzcKVMZ9E52W9sIpv2E50noYjxcMpoRFxpLWAJ4WMtamcMtLPnNeQ=="; + }; + }; "snyk-go-plugin-1.5.2" = { name = "snyk-go-plugin"; packageName = "snyk-go-plugin"; @@ -29742,6 +31544,15 @@ let sha512 = "XWajcSh6Ld+I+WdcyU3DGDuE2ydThQd8ORkESy0nQ2LwekygLYVYN66OBy0uxpqYfd4qoqeg+J8lb4oGzCmyGA=="; }; }; + "snyk-go-plugin-1.6.0" = { + name = "snyk-go-plugin"; + packageName = "snyk-go-plugin"; + version = "1.6.0"; + src = fetchurl { + url = "https://registry.npmjs.org/snyk-go-plugin/-/snyk-go-plugin-1.6.0.tgz"; + sha512 = "E6aYw7XAXSs2wJR3fU+vGQ1lVyjAw8PHIQYQwBwMkTHByhJIWPcu6Hy/jT5LcjJHlhYXlpOuk53HeLVK+kcXrQ=="; + }; + }; "snyk-gradle-plugin-2.1.0" = { name = "snyk-gradle-plugin"; packageName = "snyk-gradle-plugin"; @@ -29751,6 +31562,15 @@ let sha512 = "9gYJluomFZ5kaww5FoBvp4zUIsr27pEJ12jQJaVf0FJ0BmyYHmbCoxvHdqjCSYS2fVtF+fmPnvw0XKQOIwA1SA=="; }; }; + "snyk-gradle-plugin-2.1.1" = { + name = "snyk-gradle-plugin"; + packageName = "snyk-gradle-plugin"; + version = "2.1.1"; + src = fetchurl { + url = "https://registry.npmjs.org/snyk-gradle-plugin/-/snyk-gradle-plugin-2.1.1.tgz"; + sha512 = "aFeVC5y3XkJ5BxknHhtYo76as3xJbzSQlXACGZrQZGQ/w/UhNdM8VI1QB6Eq4uEzexleB/hcJwYxNmhI2CNCeA=="; + }; + }; "snyk-module-1.8.2" = { name = "snyk-module"; packageName = "snyk-module"; @@ -29760,6 +31580,15 @@ let sha512 = "XqhdbZ/CUuJ5gSaYdYfapLqx9qm2Mp6nyRMBCLXe9tJSiohOJsc9fQuUDbdOiRCqpA4BD6WLl+qlwOJmJoszBg=="; }; }; + "snyk-module-1.9.1" = { + name = "snyk-module"; + packageName = "snyk-module"; + version = "1.9.1"; + src = fetchurl { + url = "https://registry.npmjs.org/snyk-module/-/snyk-module-1.9.1.tgz"; + sha512 = "A+CCyBSa4IKok5uEhqT+hV/35RO6APFNLqk9DRRHg7xW2/j//nPX8wTSZUPF8QeRNEk/sX+6df7M1y6PBHGSHA=="; + }; + }; "snyk-mvn-plugin-2.0.0" = { name = "snyk-mvn-plugin"; packageName = "snyk-mvn-plugin"; @@ -29769,13 +31598,22 @@ let sha512 = "9jAhZhv+7YcqtoQYCYlgMoxK+dWBKlk+wkX27Ebg3vNddNop9q5jZitRXTjsXwfSUZHRt+Ptw1f8vei9kjzZVg=="; }; }; - "snyk-nodejs-lockfile-parser-1.5.3" = { + "snyk-nodejs-lockfile-parser-1.5.1" = { name = "snyk-nodejs-lockfile-parser"; packageName = "snyk-nodejs-lockfile-parser"; - version = "1.5.3"; + version = "1.5.1"; src = fetchurl { - url = "https://registry.npmjs.org/snyk-nodejs-lockfile-parser/-/snyk-nodejs-lockfile-parser-1.5.3.tgz"; - sha512 = "hVUUxRm7f8mN3RdTbeZGJn+w4VMKb7ke4/OB8Qhr4O5S04AMb4YOcsZ80niur05VUykPT32IyFwyGRTBi99WUw=="; + url = "https://registry.npmjs.org/snyk-nodejs-lockfile-parser/-/snyk-nodejs-lockfile-parser-1.5.1.tgz"; + sha512 = "rfFcW+ZrOEH3NxufUCpMBpNLSb4BPOxLbAM6MoRqfYH5DhSdTHsecwRDf1gU6XzQok/9Koav+1qtP8+welJC2A=="; + }; + }; + "snyk-nodejs-lockfile-parser-1.7.0" = { + name = "snyk-nodejs-lockfile-parser"; + packageName = "snyk-nodejs-lockfile-parser"; + version = "1.7.0"; + src = fetchurl { + url = "https://registry.npmjs.org/snyk-nodejs-lockfile-parser/-/snyk-nodejs-lockfile-parser-1.7.0.tgz"; + sha512 = "57Gnw8o3HQbheb808GRsofnYPaJCbpt7n+zec+C7J/GZE6GJk+WA2u1EPsNQAsfTLQ3rxBwA1Sonhg498T4COA=="; }; }; "snyk-nuget-plugin-1.6.5" = { @@ -29805,6 +31643,15 @@ let sha512 = "CEioNnDzccHyid7UIVl3bJ1dnG4co4ofI+KxuC1mo0IUXy64gxnBTeVoZF5gVLWbAyxGxSeW8f0+8GmWMHVb7w=="; }; }; + "snyk-policy-1.13.1" = { + name = "snyk-policy"; + packageName = "snyk-policy"; + version = "1.13.1"; + src = fetchurl { + url = "https://registry.npmjs.org/snyk-policy/-/snyk-policy-1.13.1.tgz"; + sha512 = "l9evS3Yk70xyvajjg+I6Ij7fr7gxpVRMZl0J1xNpWps/IVu4DSGih3aMmXi47VJozr4A/eFyj7R1lIr2GhqJCA=="; + }; + }; "snyk-python-plugin-1.8.2" = { name = "snyk-python-plugin"; packageName = "snyk-python-plugin"; @@ -29814,6 +31661,15 @@ let sha512 = "LBvjztnXarSHKyhivzM567icOOLOB98I7S9EEnjepuG+EZ0jiZzqOEMVRmzuYi+hRq3Cwh0hhjkwgJAQpKDz+g=="; }; }; + "snyk-python-plugin-1.9.0" = { + name = "snyk-python-plugin"; + packageName = "snyk-python-plugin"; + version = "1.9.0"; + src = fetchurl { + url = "https://registry.npmjs.org/snyk-python-plugin/-/snyk-python-plugin-1.9.0.tgz"; + sha512 = "zlyOHoCpmyVym9AwkboeepzEGrY3gHsM7eWP/nJ85TgCnQO5H5orKm3RL57PNbWRY+BnDmoQQ+udQgjym2+3sg=="; + }; + }; "snyk-resolve-1.0.1" = { name = "snyk-resolve"; packageName = "snyk-resolve"; @@ -29823,6 +31679,15 @@ let sha512 = "7+i+LLhtBo1Pkth01xv+RYJU8a67zmJ8WFFPvSxyCjdlKIcsps4hPQFebhz+0gC5rMemlaeIV6cqwqUf9PEDpw=="; }; }; + "snyk-resolve-deps-4.0.1" = { + name = "snyk-resolve-deps"; + packageName = "snyk-resolve-deps"; + version = "4.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/snyk-resolve-deps/-/snyk-resolve-deps-4.0.1.tgz"; + sha512 = "gieaYoOuJLXzUmDDKfQJAqfwaxa43KmSqN2d9abRfgMXnLlX9IqyoZ1wqZMbd3WN7tsHSkpWvVwc4FHdQEkUKA=="; + }; + }; "snyk-resolve-deps-4.0.2" = { name = "snyk-resolve-deps"; packageName = "snyk-resolve-deps"; @@ -29963,7 +31828,7 @@ let packageName = "socket.io-parser"; version = "2.1.2"; src = fetchurl { - url = "https://registry.npmjs.org/socket.io-parser/-/socket.io-parser-2.1.2.tgz"; + url = "http://registry.npmjs.org/socket.io-parser/-/socket.io-parser-2.1.2.tgz"; sha1 = "876655b9edd555c5bdf7301cedf30a436c67b8b0"; }; }; @@ -29972,7 +31837,7 @@ let packageName = "socket.io-parser"; version = "2.2.0"; src = fetchurl { - url = "https://registry.npmjs.org/socket.io-parser/-/socket.io-parser-2.2.0.tgz"; + url = "http://registry.npmjs.org/socket.io-parser/-/socket.io-parser-2.2.0.tgz"; sha1 = "2609601f59e6a7fab436a53be3d333fbbfcbd30a"; }; }; @@ -29981,7 +31846,7 @@ let packageName = "socket.io-parser"; version = "2.3.1"; src = fetchurl { - url = "https://registry.npmjs.org/socket.io-parser/-/socket.io-parser-2.3.1.tgz"; + url = "http://registry.npmjs.org/socket.io-parser/-/socket.io-parser-2.3.1.tgz"; sha1 = "dd532025103ce429697326befd64005fcfe5b4a0"; }; }; @@ -29990,7 +31855,7 @@ let packageName = "socket.io-parser"; version = "3.2.0"; src = fetchurl { - url = "https://registry.npmjs.org/socket.io-parser/-/socket.io-parser-3.2.0.tgz"; + url = "http://registry.npmjs.org/socket.io-parser/-/socket.io-parser-3.2.0.tgz"; sha512 = "FYiBx7rc/KORMJlgsXysflWx/RIvtqZbyGLlHZvjfmPTPeuD/I8MaW7cfFrj5tRltICJdgwflhfZ3NVVbVLFQA=="; }; }; @@ -30012,6 +31877,15 @@ let sha512 = "0GabKw7n9mI46vcNrVfs0o6XzWzjVa3h6GaSo2UPxtWAROXUWavfJWh1M4PR5tnE0dcnQXZIDFP4yrAysLze/w=="; }; }; + "socks-2.2.2" = { + name = "socks"; + packageName = "socks"; + version = "2.2.2"; + src = fetchurl { + url = "https://registry.npmjs.org/socks/-/socks-2.2.2.tgz"; + sha512 = "g6wjBnnMOZpE0ym6e0uHSddz9p3a+WsBaaYQaBaSCJYvrC4IXykQR9MNGjLQf38e9iIIhp3b1/Zk8YZI3KGJ0Q=="; + }; + }; "socks-proxy-agent-3.0.1" = { name = "socks-proxy-agent"; packageName = "socks-proxy-agent"; @@ -30066,13 +31940,13 @@ let sha512 = "UMmCHovws/sxIBZsIRhIl8uRPou/RFDD0vVop81T1hG106NLLgqajKKuHAOtAP6hflnZ0UrVA2VFwddTd/NQyA=="; }; }; - "sodium-native-2.2.2" = { + "sodium-native-2.2.3" = { name = "sodium-native"; packageName = "sodium-native"; - version = "2.2.2"; + version = "2.2.3"; src = fetchurl { - url = "https://registry.npmjs.org/sodium-native/-/sodium-native-2.2.2.tgz"; - sha512 = "TdAa+PlmWki2Spx3TJyGFVkj6gLsxs5HV/i/j2COZ5INEaCmLz15NIHgUAT/GQ0KrG8Ddy6tkvuP7B5YJpmW6g=="; + url = "https://registry.npmjs.org/sodium-native/-/sodium-native-2.2.3.tgz"; + sha512 = "0rQvKwlWW86YmmAhosnJ6/2PR3mdAtfuWW147L4x3/gwfL7XiJ7mf2BPvBwU16vsYQNY1yxOQg9YT/MN6qoZOA=="; }; }; "sodium-universal-2.0.0" = { @@ -30084,13 +31958,13 @@ let sha512 = "csdVyakzHJRyCevY4aZC2Eacda8paf+4nmRGF2N7KxCLKY2Ajn72JsExaQlJQ2BiXJncp44p3T+b80cU+2TTsg=="; }; }; - "sonic-boom-0.6.1" = { + "sonic-boom-0.6.2" = { name = "sonic-boom"; packageName = "sonic-boom"; - version = "0.6.1"; + version = "0.6.2"; src = fetchurl { - url = "https://registry.npmjs.org/sonic-boom/-/sonic-boom-0.6.1.tgz"; - sha512 = "3qx6XXDeG+hPNa+jla1H6BMBLcjLl8L8NRERLVeIf/EuPqoqmq4K8owG29Xu7OypT/7/YT/0uKW6YitsKA+nLQ=="; + url = "https://registry.npmjs.org/sonic-boom/-/sonic-boom-0.6.2.tgz"; + sha512 = "JVftM6ZJanmU/akt+bfiHUKQq0MtRe0ayXyEXjB1yiZYRH6ettF4gu7Dbei4HbzTmBVNshHpPJLZ9R9lY2FjWA=="; }; }; "sorcery-0.10.0" = { @@ -30174,6 +32048,15 @@ let sha1 = "558e7f57a5bf6baf6501baf2ae2c9076c4502006"; }; }; + "source-list-map-0.1.8" = { + name = "source-list-map"; + packageName = "source-list-map"; + version = "0.1.8"; + src = fetchurl { + url = "https://registry.npmjs.org/source-list-map/-/source-list-map-0.1.8.tgz"; + sha1 = "c550b2ab5427f6b3f21f5afead88c4f5587b2106"; + }; + }; "source-list-map-2.0.1" = { name = "source-list-map"; packageName = "source-list-map"; @@ -30390,13 +32273,13 @@ let sha512 = "Yg6D3XpRD4kkOmTpdgbUiEJFKghJH03fiC1OPll5h/0sO6neh2jqRDVHOQ4o/LMea0tgCkbMgea5ip/e+MkWyg=="; }; }; - "spdx-license-ids-3.0.1" = { + "spdx-license-ids-3.0.2" = { name = "spdx-license-ids"; packageName = "spdx-license-ids"; - version = "3.0.1"; + version = "3.0.2"; src = fetchurl { - url = "https://registry.npmjs.org/spdx-license-ids/-/spdx-license-ids-3.0.1.tgz"; - sha512 = "TfOfPcYGBB5sDuPn3deByxPhmfegAhpDYKSOXZQN81Oyrrif8ZCodOLzK3AesELnCx03kikhyDwh0pfvvQvF8w=="; + url = "https://registry.npmjs.org/spdx-license-ids/-/spdx-license-ids-3.0.2.tgz"; + sha512 = "qky9CVt0lVIECkEsYbNILVnPvycuEBkXoMFLRWsREkomQLevYhtRKC+R91a5TOAQ3bCMjikRwhyaRqj1VYatYg=="; }; }; "spdy-1.32.5" = { @@ -30404,7 +32287,7 @@ let packageName = "spdy"; version = "1.32.5"; src = fetchurl { - url = "https://registry.npmjs.org/spdy/-/spdy-1.32.5.tgz"; + url = "http://registry.npmjs.org/spdy/-/spdy-1.32.5.tgz"; sha1 = "70eff23cde4e97d52a445f65afddcc5695eb5edb"; }; }; @@ -30543,13 +32426,13 @@ let sha1 = "06cd70795ee58d1462d100a45c660df3179d3b39"; }; }; - "ssb-blobs-1.1.5" = { + "ssb-blobs-1.1.6" = { name = "ssb-blobs"; packageName = "ssb-blobs"; - version = "1.1.5"; + version = "1.1.6"; src = fetchurl { - url = "https://registry.npmjs.org/ssb-blobs/-/ssb-blobs-1.1.5.tgz"; - sha512 = "DeeInkFU8oN1mYlPVrqrm9tupf6wze4HuowK7N2vv/O+UeSLuYPU1p4HrxSqdAPvUabr0OtvbFA6z1T4nw+9fw=="; + url = "https://registry.npmjs.org/ssb-blobs/-/ssb-blobs-1.1.6.tgz"; + sha512 = "/dQIhg19Sk/cnRg25yUFFKhY67eB+Mlx00rK138dCVz3JhKLdmgDbK8kF5Ik/C/DdxDVya3xJZRW0fexwGOAkw=="; }; }; "ssb-client-4.6.0" = { @@ -30561,31 +32444,31 @@ let sha512 = "LyH5Y/U7xvafmAuG1puyhNv4G3Ew9xC67dYgRX0wwbUf5iT422WB1Cvat9qGFAu3/BQbdctXtdEQPxaAn0+hYA=="; }; }; - "ssb-config-2.3.5" = { + "ssb-config-2.3.7" = { name = "ssb-config"; packageName = "ssb-config"; - version = "2.3.5"; + version = "2.3.7"; src = fetchurl { - url = "https://registry.npmjs.org/ssb-config/-/ssb-config-2.3.5.tgz"; - sha512 = "lT30POSTXX6nsACYwMkNto0M74YMoEzLqpSpZqK+AwaRWlNvFqGmjEMwLb5G5jz7deCrXJFo87O3IubiQrwdGg=="; + url = "https://registry.npmjs.org/ssb-config/-/ssb-config-2.3.7.tgz"; + sha512 = "djjLoNpDlE0K/UfhU1mNuJqOy8oJsv/6Q8RLDTHdby2Z+r2MxKRaACH3R9DMZyzgnd3wLjXba5ntNvsuabjx5g=="; }; }; - "ssb-ebt-5.2.3" = { + "ssb-ebt-5.2.7" = { name = "ssb-ebt"; packageName = "ssb-ebt"; - version = "5.2.3"; + version = "5.2.7"; src = fetchurl { - url = "https://registry.npmjs.org/ssb-ebt/-/ssb-ebt-5.2.3.tgz"; - sha512 = "LTIry3qRZRLqv3l97tcd22dNiLjZHz7Ynot0OQFG10zL4jsECSkSxMUqSwrFUTfZEySUxhAx92TDcafDy+/J3A=="; + url = "https://registry.npmjs.org/ssb-ebt/-/ssb-ebt-5.2.7.tgz"; + sha512 = "dLiLRtGMagSKRuOIBQzPDfAQf7LNFR8+g91tKxMPbV6WMENF2bojz3POd75i6BhXJhJx1A6zpO6IrMz3StmtbA=="; }; }; - "ssb-friends-3.1.3" = { + "ssb-friends-3.1.6" = { name = "ssb-friends"; packageName = "ssb-friends"; - version = "3.1.3"; + version = "3.1.6"; src = fetchurl { - url = "https://registry.npmjs.org/ssb-friends/-/ssb-friends-3.1.3.tgz"; - sha512 = "bufgvAcqjAyjKfmh788dr3fV9YYrIgdkIhfETPHidbgIKgx15clNUzjP/s7FZk2PwwrjHyQ54kE0BR2em6u/nQ=="; + url = "https://registry.npmjs.org/ssb-friends/-/ssb-friends-3.1.6.tgz"; + sha512 = "0wKk/MpQ+Xdteso7Ipmgq1AO7m0sAyJjtbEpaAPLR8Mb5uPcK0n/rgGG6nnI6Vl8z1fuhkiqy4BtLQshaSBi/A=="; }; }; "ssb-git-0.5.0" = { @@ -30696,31 +32579,31 @@ let sha512 = "y4OA2MvGl1jU7bUTYsTmMNSqlPt4eh9401THUW1DO4aFyBFEWvpa3eKJHc8aTmaph2hutPPbdKgEFsWDzw26uw=="; }; }; - "ssb-ref-2.12.0" = { + "ssb-ref-2.13.6" = { name = "ssb-ref"; packageName = "ssb-ref"; - version = "2.12.0"; + version = "2.13.6"; src = fetchurl { - url = "https://registry.npmjs.org/ssb-ref/-/ssb-ref-2.12.0.tgz"; - sha512 = "xcVFLYgvWkxZoNDCOQHLqgHYsjmfunVkdby9OPEygjufXbiW6zpnFTBqlqEBojBetxxtVdwCgZreD9kYXED/ZA=="; + url = "https://registry.npmjs.org/ssb-ref/-/ssb-ref-2.13.6.tgz"; + sha512 = "l4mvU4PwXYTWJFhps4g9RkvPAEqJ5klR3oFBEaUqXTHfDzEq2pAn11Np2JqH0CM9JnW/AbK9H+Uzw4aofA9D8A=="; }; }; - "ssb-validate-3.0.11" = { + "ssb-validate-4.0.3" = { name = "ssb-validate"; packageName = "ssb-validate"; - version = "3.0.11"; + version = "4.0.3"; src = fetchurl { - url = "https://registry.npmjs.org/ssb-validate/-/ssb-validate-3.0.11.tgz"; - sha512 = "mZPI9HKZtqPP7Qi26B0GR7HqYmmcELEaoj5zr8TlUcULg9BOZy7f4VSzcKZ36LIkvpuK2sfA6znxIlBLq78fjg=="; + url = "https://registry.npmjs.org/ssb-validate/-/ssb-validate-4.0.3.tgz"; + sha512 = "ee0HgdtRef+dL98sbcEVB7+gnr8u5TqJcQqRdISWyfKcLKv1GXsmXb7VSYVRGveIkbnxHvOWps+XEJzmqqgxHQ=="; }; }; - "ssb-ws-3.0.0" = { + "ssb-ws-3.0.2" = { name = "ssb-ws"; packageName = "ssb-ws"; - version = "3.0.0"; + version = "3.0.2"; src = fetchurl { - url = "https://registry.npmjs.org/ssb-ws/-/ssb-ws-3.0.0.tgz"; - sha512 = "Qna9Oa9+MYhv+Xtqmidb6xww2JZAdO6ZzidJleWbOLJTSV2QkkB7aAFpWdYst/N78ZhThPqT/mdgEmWpaCqTbw=="; + url = "https://registry.npmjs.org/ssb-ws/-/ssb-ws-3.0.2.tgz"; + sha512 = "rQnbFIdzyQrB77y1UD0cWlW/TYO6rqCT1RO95p0ka6UQsEBtm/O7TN8h5AgroD9XqyxdusXhEbhobpUt41s1Cw=="; }; }; "ssh-config-1.1.3" = { @@ -30750,13 +32633,13 @@ let sha1 = "130f5975eddad963f1d56f92b9ac6c51fa9f83eb"; }; }; - "sshpk-1.15.1" = { + "sshpk-1.15.2" = { name = "sshpk"; packageName = "sshpk"; - version = "1.15.1"; + version = "1.15.2"; src = fetchurl { - url = "https://registry.npmjs.org/sshpk/-/sshpk-1.15.1.tgz"; - sha512 = "mSdgNUaidk+dRU5MhYtN9zebdzF2iG0cNPWy8HG+W8y+fT1JnSkh0fzzpjOa0L7P8i1Rscz38t0h4gPcKz43xA=="; + url = "https://registry.npmjs.org/sshpk/-/sshpk-1.15.2.tgz"; + sha512 = "Ra/OXQtuh0/enyl4ETZAfTaeksa6BXks5ZcjpSUNrjBr0DvrJKX+1fsKDPpT9TBXgHAFsa4510aNVgI8g/+SzA=="; }; }; "sshpk-1.7.1" = { @@ -31484,7 +33367,7 @@ let packageName = "strip-eof"; version = "1.0.0"; src = fetchurl { - url = "https://registry.npmjs.org/strip-eof/-/strip-eof-1.0.0.tgz"; + url = "http://registry.npmjs.org/strip-eof/-/strip-eof-1.0.0.tgz"; sha1 = "bb43ff5598a6eb05d89b59fcd129c983313606bf"; }; }; @@ -31767,13 +33650,13 @@ let sha1 = "a4316ccb0d40a77d30dadf91f0f4db7e475f948a"; }; }; - "swagger-test-templates-1.5.0" = { + "swagger-test-templates-1.5.1" = { name = "swagger-test-templates"; packageName = "swagger-test-templates"; - version = "1.5.0"; + version = "1.5.1"; src = fetchurl { - url = "https://registry.npmjs.org/swagger-test-templates/-/swagger-test-templates-1.5.0.tgz"; - sha512 = "1IBHCamO7uJuFo11a/aaA0ZPWJkAfiuvadmLO9TwXiY2Op+SigTL9er/GabuhK4gXMNJ2MaoPQ4F90HQlNFYJQ=="; + url = "https://registry.npmjs.org/swagger-test-templates/-/swagger-test-templates-1.5.1.tgz"; + sha512 = "p5EotTsyVunfNGvIr07r33Tij5p4r1aUv7QFvYYW3iO6pEUo2OXxINufkx8jBjD4/4hvP2ZlCjgLDexT2ClnGw=="; }; }; "swagger-tools-0.9.16" = { @@ -31962,7 +33845,7 @@ let packageName = "tar"; version = "0.1.17"; src = fetchurl { - url = "https://registry.npmjs.org/tar/-/tar-0.1.17.tgz"; + url = "http://registry.npmjs.org/tar/-/tar-0.1.17.tgz"; sha1 = "408c8a95deb8e78a65b59b1a51a333183a32badc"; }; }; @@ -31971,7 +33854,7 @@ let packageName = "tar"; version = "2.2.1"; src = fetchurl { - url = "https://registry.npmjs.org/tar/-/tar-2.2.1.tgz"; + url = "http://registry.npmjs.org/tar/-/tar-2.2.1.tgz"; sha1 = "8e4d2a256c0e2185c6b18ad694aec968b83cb1d1"; }; }; @@ -31984,13 +33867,13 @@ let sha512 = "pQNFsg+Wb6VXsrIPUnuQwrHR4wD5ASBR0jRyiT4/AALFA2Nl+CjhkDX5fTmIwCuULRtyQR3Dae2BBnP2EFHscw=="; }; }; - "tar-4.4.6" = { + "tar-4.4.8" = { name = "tar"; packageName = "tar"; - version = "4.4.6"; + version = "4.4.8"; src = fetchurl { - url = "https://registry.npmjs.org/tar/-/tar-4.4.6.tgz"; - sha512 = "tMkTnh9EdzxyfW+6GK6fCahagXsnYk6kE6S9Gr9pjVdys769+laCTbodXDhPAjzVtEBazRgP0gYqOjnk9dQzLg=="; + url = "https://registry.npmjs.org/tar/-/tar-4.4.8.tgz"; + sha512 = "LzHF64s5chPQQS0IYBn9IN5h3i98c12bo4NCO7e0sGM2llXQ3p2FGC5sdENN4cTW48O915Sh+x+EXx7XW96xYQ=="; }; }; "tar-fs-1.16.3" = { @@ -32020,6 +33903,24 @@ let sha512 = "rzS0heiNf8Xn7/mpdSVVSMAWAoy9bfb1WOTYC78Z0UQKeKa/CWS8FOq0lKGNa8DWKAn9gxjCvMLYc5PGXYlK2A=="; }; }; + "taskkill-2.0.0" = { + name = "taskkill"; + packageName = "taskkill"; + version = "2.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/taskkill/-/taskkill-2.0.0.tgz"; + sha1 = "a354305702a964357033027aa949eaed5331b784"; + }; + }; + "tasklist-3.1.1" = { + name = "tasklist"; + packageName = "tasklist"; + version = "3.1.1"; + src = fetchurl { + url = "https://registry.npmjs.org/tasklist/-/tasklist-3.1.1.tgz"; + sha512 = "G3I7QWUBSNWaekrJcDabydF6dcvy+vZ2PrX04JYq1p914TOLgpN+ryMtheGavs1LYVevTbTmwjQY8aeX8yLsyA=="; + }; + }; "temp-0.6.0" = { name = "temp"; packageName = "temp"; @@ -32083,6 +33984,15 @@ let sha1 = "a87ee424be01a1d28f2f301045043a5bcd679a05"; }; }; + "test-exclude-4.2.3" = { + name = "test-exclude"; + packageName = "test-exclude"; + version = "4.2.3"; + src = fetchurl { + url = "https://registry.npmjs.org/test-exclude/-/test-exclude-4.2.3.tgz"; + sha512 = "SYbXgY64PT+4GAL2ocI3HwPa4Q4TBKm0cwAVeKOt/Aoc0gSpNRjJX8w0pA1LMKZ3LBmd8pYBqApFNQLII9kavA=="; + }; + }; "text-extensions-1.9.0" = { name = "text-extensions"; packageName = "text-extensions"; @@ -32232,7 +34142,7 @@ let packageName = "through2"; version = "0.6.5"; src = fetchurl { - url = "https://registry.npmjs.org/through2/-/through2-0.6.5.tgz"; + url = "http://registry.npmjs.org/through2/-/through2-0.6.5.tgz"; sha1 = "41ab9c67b29d57209071410e1d7a7a968cd3ad48"; }; }; @@ -32241,10 +34151,19 @@ let packageName = "through2"; version = "2.0.3"; src = fetchurl { - url = "https://registry.npmjs.org/through2/-/through2-2.0.3.tgz"; + url = "http://registry.npmjs.org/through2/-/through2-2.0.3.tgz"; sha1 = "0004569b37c7c74ba39c43f3ced78d1ad94140be"; }; }; + "through2-2.0.5" = { + name = "through2"; + packageName = "through2"; + version = "2.0.5"; + src = fetchurl { + url = "https://registry.npmjs.org/through2/-/through2-2.0.5.tgz"; + sha512 = "/mrRod8xqpA+IHSLyGCQ2s8SPHiCDEeQJSep1jqLYeEUClOFG2Qsh+4FU6G9VeqpZnGW/Su8LQGc4YKni5rYSQ=="; + }; + }; "through2-filter-2.0.0" = { name = "through2-filter"; packageName = "through2-filter"; @@ -32277,17 +34196,17 @@ let packageName = "thunky"; version = "0.1.0"; src = fetchurl { - url = "https://registry.npmjs.org/thunky/-/thunky-0.1.0.tgz"; + url = "http://registry.npmjs.org/thunky/-/thunky-0.1.0.tgz"; sha1 = "bf30146824e2b6e67b0f2d7a4ac8beb26908684e"; }; }; - "thunky-1.0.2" = { + "thunky-1.0.3" = { name = "thunky"; packageName = "thunky"; - version = "1.0.2"; + version = "1.0.3"; src = fetchurl { - url = "https://registry.npmjs.org/thunky/-/thunky-1.0.2.tgz"; - sha1 = "a862e018e3fb1ea2ec3fce5d55605cf57f247371"; + url = "https://registry.npmjs.org/thunky/-/thunky-1.0.3.tgz"; + sha512 = "YwT8pjmNcAXBZqrubu22P4FYsh2D4dxRmnWBOL8Jk8bUcRUtc5326kx32tuTmFDAZtLOGEVNl8POAR8j896Iow=="; }; }; "tildify-1.2.0" = { @@ -32434,6 +34353,15 @@ let sha512 = "jRCJlojKnZ3addtTOjdIqoRuPEKBvNXcGYqzO6zWZX8KfKEpnGY5jfggJQ3EjKuu8D4bJRr0y+cYJFmYbImXGw=="; }; }; + "tmp-graphql-config-extension-openapi-1.0.7" = { + name = "tmp-graphql-config-extension-openapi"; + packageName = "tmp-graphql-config-extension-openapi"; + version = "1.0.7"; + src = fetchurl { + url = "https://registry.npmjs.org/tmp-graphql-config-extension-openapi/-/tmp-graphql-config-extension-openapi-1.0.7.tgz"; + sha512 = "NQPUaywaVC2hzWkBBsTX3sV2XfxU0mc409rJyrA7iCu5DSTjMLUqI+U4KJVSy/Ltp0zgbWMWua471R7zMql9Pw=="; + }; + }; "to-absolute-glob-2.0.2" = { name = "to-absolute-glob"; packageName = "to-absolute-glob"; @@ -32515,6 +34443,15 @@ let sha1 = "297588b7b0e7e0ac08e04e672f85c1f4999e17af"; }; }; + "to-readable-stream-1.0.0" = { + name = "to-readable-stream"; + packageName = "to-readable-stream"; + version = "1.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/to-readable-stream/-/to-readable-stream-1.0.0.tgz"; + sha512 = "Iq25XBt6zD5npPhlLVXGFN3/gyR2/qODcKNNyTMd4vbm39HUaOiAM4PMq0eMVC/Tkxz+Zjdsc55g9yyz+Yq00Q=="; + }; + }; "to-regex-3.0.2" = { name = "to-regex"; packageName = "to-regex"; @@ -32547,7 +34484,7 @@ let packageName = "to-vfile"; version = "1.0.0"; src = fetchurl { - url = "https://registry.npmjs.org/to-vfile/-/to-vfile-1.0.0.tgz"; + url = "http://registry.npmjs.org/to-vfile/-/to-vfile-1.0.0.tgz"; sha1 = "88defecd43adb2ef598625f0e3d59f7f342941ba"; }; }; @@ -32587,13 +34524,13 @@ let sha512 = "O7L5hhSQHxuufWUdcTRPfuTh3phKfAZ/dqfxZFoxPCj2RYmpaSGLEIs016FCXItQwNr08yefUB5TSjzRYnajTA=="; }; }; - "topo-3.0.0" = { + "topo-3.0.3" = { name = "topo"; packageName = "topo"; - version = "3.0.0"; + version = "3.0.3"; src = fetchurl { - url = "https://registry.npmjs.org/topo/-/topo-3.0.0.tgz"; - sha512 = "Tlu1fGlR90iCdIPURqPiufqAlCZYzLjHYVVbcFWDMcX7+tK8hdZWAfsMrD/pBul9jqHHwFjNdf1WaxA9vTRRhw=="; + url = "https://registry.npmjs.org/topo/-/topo-3.0.3.tgz"; + sha512 = "IgpPtvD4kjrJ7CRA3ov2FhWQADwv+Tdqbsf1ZnPUSAtCJ9e1Z44MmoSGDXGk4IppoZA7jd/QRkNddlLJWlUZsQ=="; }; }; "torrent-discovery-5.4.0" = { @@ -32785,6 +34722,15 @@ let sha512 = "DlX6dR0lOIRDFxI0mjL9IYg6OTncLm/Zt+JiBhE5OlFcAR8yc9S7FFXU9so0oda47frdM/JFsk7UjNt9vscKcg=="; }; }; + "tree-kill-1.2.1" = { + name = "tree-kill"; + packageName = "tree-kill"; + version = "1.2.1"; + src = fetchurl { + url = "https://registry.npmjs.org/tree-kill/-/tree-kill-1.2.1.tgz"; + sha512 = "4hjqbObwlh2dLyW4tcz0Ymw0ggoaVDMveUB9w8kFSQScdRLo0gxO9J7WFcUBo+W3C1TLdFIEwNOWebgZZ0RH9Q=="; + }; + }; "trim-0.0.1" = { name = "trim"; packageName = "trim"; @@ -33100,13 +35046,13 @@ let sha512 = "kk80vLW9iGtjMnIv11qyxLqZm20UklzuR2tL0QAnDIygIUIemcZMxlMWudl9OOt76H3ntVzcTiddQ1/pAAJMYg=="; }; }; - "typescript-3.1.3" = { + "typescript-3.1.6" = { name = "typescript"; packageName = "typescript"; - version = "3.1.3"; + version = "3.1.6"; src = fetchurl { - url = "https://registry.npmjs.org/typescript/-/typescript-3.1.3.tgz"; - sha512 = "+81MUSyX+BaSo+u2RbozuQk/UWx6hfG0a5gHu4ANEM4sU96XbuIyAB+rWBW1u70c6a5QuZfuYICn3s2UjuHUpA=="; + url = "https://registry.npmjs.org/typescript/-/typescript-3.1.6.tgz"; + sha512 = "tDMYfVtvpb96msS1lDX9MEdHrW4yOuZ4Kdc4Him9oU796XldPYF/t2+uKoX0BBa0hXXwDlqYQbXY5Rzjzc5hBA=="; }; }; "typewise-1.0.3" = { @@ -33487,6 +35433,15 @@ let sha512 = "KVGLW1Bri30x00yv4HNM8kBxoqFXr0Sbo55735nvrlsx4PYBZol3UtoWgO492fSwmsetzPEZzy73rbU8OGXJcA=="; }; }; + "unicode-canonical-property-names-ecmascript-1.0.4" = { + name = "unicode-canonical-property-names-ecmascript"; + packageName = "unicode-canonical-property-names-ecmascript"; + version = "1.0.4"; + src = fetchurl { + url = "https://registry.npmjs.org/unicode-canonical-property-names-ecmascript/-/unicode-canonical-property-names-ecmascript-1.0.4.tgz"; + sha512 = "jDrNnXWHd4oHiTZnx/ZG7gtUTVp+gCcTTKr8L0HjlwphROEW3+Him+IpvC+xcJEFegapiMZyZe02CyuOnRmbnQ=="; + }; + }; "unicode-emoji-modifier-base-1.0.0" = { name = "unicode-emoji-modifier-base"; packageName = "unicode-emoji-modifier-base"; @@ -33496,12 +35451,39 @@ let sha1 = "dbbd5b54ba30f287e2a8d5a249da6c0cef369459"; }; }; + "unicode-match-property-ecmascript-1.0.4" = { + name = "unicode-match-property-ecmascript"; + packageName = "unicode-match-property-ecmascript"; + version = "1.0.4"; + src = fetchurl { + url = "https://registry.npmjs.org/unicode-match-property-ecmascript/-/unicode-match-property-ecmascript-1.0.4.tgz"; + sha512 = "L4Qoh15vTfntsn4P1zqnHulG0LdXgjSO035fEpdtp6YxXhMT51Q6vgM5lYdG/5X3MjS+k/Y9Xw4SFCY9IkR0rg=="; + }; + }; + "unicode-match-property-value-ecmascript-1.0.2" = { + name = "unicode-match-property-value-ecmascript"; + packageName = "unicode-match-property-value-ecmascript"; + version = "1.0.2"; + src = fetchurl { + url = "https://registry.npmjs.org/unicode-match-property-value-ecmascript/-/unicode-match-property-value-ecmascript-1.0.2.tgz"; + sha512 = "Rx7yODZC1L/T8XKo/2kNzVAQaRE88AaMvI1EF/Xnj3GW2wzN6fop9DDWuFAKUVFH7vozkz26DzP0qyWLKLIVPQ=="; + }; + }; + "unicode-property-aliases-ecmascript-1.0.4" = { + name = "unicode-property-aliases-ecmascript"; + packageName = "unicode-property-aliases-ecmascript"; + version = "1.0.4"; + src = fetchurl { + url = "https://registry.npmjs.org/unicode-property-aliases-ecmascript/-/unicode-property-aliases-ecmascript-1.0.4.tgz"; + sha512 = "2WSLa6OdYd2ng8oqiGIWnJqyFArvhn+5vgx5GTxMbUYjCYKUcuKS62YLFF0R/BDGlB1yzXjQOLtPAfHsgirEpg=="; + }; + }; "unified-2.1.4" = { name = "unified"; packageName = "unified"; version = "2.1.4"; src = fetchurl { - url = "https://registry.npmjs.org/unified/-/unified-2.1.4.tgz"; + url = "http://registry.npmjs.org/unified/-/unified-2.1.4.tgz"; sha1 = "14bc6cd40d98ffff75b405506bad873ecbbac3ba"; }; }; @@ -33739,6 +35721,15 @@ let sha1 = "d2f0f737d16b0615e72a6935ed04214572d56f97"; }; }; + "unzipper-0.9.4" = { + name = "unzipper"; + packageName = "unzipper"; + version = "0.9.4"; + src = fetchurl { + url = "https://registry.npmjs.org/unzipper/-/unzipper-0.9.4.tgz"; + sha512 = "kGrkTaphmXE+0/A5Q7rwcm/xHlDkXDOGEh6wuiN3SUQsyVWd7V51rwqttlNTT91JrLkfn34MoBNf38unF0vhRw=="; + }; + }; "upath-1.1.0" = { name = "upath"; packageName = "upath"; @@ -33987,7 +35978,7 @@ let packageName = "utf8"; version = "2.0.0"; src = fetchurl { - url = "https://registry.npmjs.org/utf8/-/utf8-2.0.0.tgz"; + url = "http://registry.npmjs.org/utf8/-/utf8-2.0.0.tgz"; sha1 = "79ce59eced874809cab9a71fc7102c7d45d4118d"; }; }; @@ -34014,7 +36005,7 @@ let packageName = "util"; version = "0.10.3"; src = fetchurl { - url = "https://registry.npmjs.org/util/-/util-0.10.3.tgz"; + url = "http://registry.npmjs.org/util/-/util-0.10.3.tgz"; sha1 = "7afb1afe50805246489e3db7fe0ed379336ac0f9"; }; }; @@ -34032,7 +36023,7 @@ let packageName = "util"; version = "0.4.9"; src = fetchurl { - url = "https://registry.npmjs.org/util/-/util-0.4.9.tgz"; + url = "http://registry.npmjs.org/util/-/util-0.4.9.tgz"; sha1 = "d95d5830d2328ec17dee3c80bfc50c33562b75a3"; }; }; @@ -34171,6 +36162,15 @@ let sha512 = "yXJmeNaw3DnnKAOKJE51sL/ZaYfWJRl1pK9dr19YFCu0ObS231AB1/LbqTKRAQ5kw8A90rA6fr4riOUpTZvQZA=="; }; }; + "v8-compile-cache-2.0.2" = { + name = "v8-compile-cache"; + packageName = "v8-compile-cache"; + version = "2.0.2"; + src = fetchurl { + url = "https://registry.npmjs.org/v8-compile-cache/-/v8-compile-cache-2.0.2.tgz"; + sha512 = "1wFuMUIM16MDJRCrpbpuEPTUGmM5QMUg0cr3KFwra2XgOgFcPGDQHDh3CszSCD2Zewc/dh/pamNEW8CbfDebUw=="; + }; + }; "v8-debug-1.0.1" = { name = "v8-debug"; packageName = "v8-debug"; @@ -34198,15 +36198,6 @@ let sha1 = "aab1a1fa30d45f88dd321148875ac02c0b55e5b4"; }; }; - "v8flags-3.0.2" = { - name = "v8flags"; - packageName = "v8flags"; - version = "3.0.2"; - src = fetchurl { - url = "https://registry.npmjs.org/v8flags/-/v8flags-3.0.2.tgz"; - sha512 = "6sgSKoFw1UpUPd3cFdF7QGnrH6tDeBgW1F3v9gy8gLY0mlbiBXq8soy8aQpY6xeeCjH5K+JvC62Acp7gtl7wWA=="; - }; - }; "v8flags-3.1.1" = { name = "v8flags"; packageName = "v8flags"; @@ -34252,13 +36243,13 @@ let sha1 = "5fa912d81eb7d0c74afc140de7317f0ca7df437e"; }; }; - "validator-10.8.0" = { + "validator-10.9.0" = { name = "validator"; packageName = "validator"; - version = "10.8.0"; + version = "10.9.0"; src = fetchurl { - url = "https://registry.npmjs.org/validator/-/validator-10.8.0.tgz"; - sha512 = "mXqMxfCh5NLsVgYVKl9WvnHNDPCcbNppHSPPowu0VjtSsGWVY+z8hJF44edLR1nbLNzi3jYoYsIl8KZpioIk6g=="; + url = "https://registry.npmjs.org/validator/-/validator-10.9.0.tgz"; + sha512 = "hZJcZSWz9poXBlAkjjcsNAdrZ6JbjD3kWlNjq/+vE7RLLS/+8PAj3qVVwrwsOz/WL8jPmZ1hYkRvtlUeZAm4ug=="; }; }; "validator-5.2.0" = { @@ -34419,7 +36410,7 @@ let packageName = "vfile"; version = "1.4.0"; src = fetchurl { - url = "https://registry.npmjs.org/vfile/-/vfile-1.4.0.tgz"; + url = "http://registry.npmjs.org/vfile/-/vfile-1.4.0.tgz"; sha1 = "c0fd6fa484f8debdb771f68c31ed75d88da97fe7"; }; }; @@ -34428,7 +36419,7 @@ let packageName = "vfile-find-down"; version = "1.0.0"; src = fetchurl { - url = "https://registry.npmjs.org/vfile-find-down/-/vfile-find-down-1.0.0.tgz"; + url = "http://registry.npmjs.org/vfile-find-down/-/vfile-find-down-1.0.0.tgz"; sha1 = "84a4d66d03513f6140a84e0776ef0848d4f0ad95"; }; }; @@ -34437,7 +36428,7 @@ let packageName = "vfile-find-up"; version = "1.0.0"; src = fetchurl { - url = "https://registry.npmjs.org/vfile-find-up/-/vfile-find-up-1.0.0.tgz"; + url = "http://registry.npmjs.org/vfile-find-up/-/vfile-find-up-1.0.0.tgz"; sha1 = "5604da6fe453b34350637984eb5fe4909e280390"; }; }; @@ -34446,7 +36437,7 @@ let packageName = "vfile-reporter"; version = "1.5.0"; src = fetchurl { - url = "https://registry.npmjs.org/vfile-reporter/-/vfile-reporter-1.5.0.tgz"; + url = "http://registry.npmjs.org/vfile-reporter/-/vfile-reporter-1.5.0.tgz"; sha1 = "21a7009bfe55e24df8ff432aa5bf6f6efa74e418"; }; }; @@ -34455,7 +36446,7 @@ let packageName = "vfile-sort"; version = "1.0.0"; src = fetchurl { - url = "https://registry.npmjs.org/vfile-sort/-/vfile-sort-1.0.0.tgz"; + url = "http://registry.npmjs.org/vfile-sort/-/vfile-sort-1.0.0.tgz"; sha1 = "17ee491ba43e8951bb22913fcff32a7dc4d234d4"; }; }; @@ -34720,13 +36711,13 @@ let sha1 = "13587190f34e72ba7a07ebbaa7e70ac147b1fb7d"; }; }; - "vue-cli-plugin-apollo-0.16.6" = { + "vue-cli-plugin-apollo-0.17.4" = { name = "vue-cli-plugin-apollo"; packageName = "vue-cli-plugin-apollo"; - version = "0.16.6"; + version = "0.17.4"; src = fetchurl { - url = "https://registry.npmjs.org/vue-cli-plugin-apollo/-/vue-cli-plugin-apollo-0.16.6.tgz"; - sha512 = "2GFJQg84BrdgLZXkvwxndlAljOvPOhoNVXrVChSTpiOgEu5JqPkVn71fAeVZ/OYzlcs+48trQQ32SXoHrJyQ0A=="; + url = "https://registry.npmjs.org/vue-cli-plugin-apollo/-/vue-cli-plugin-apollo-0.17.4.tgz"; + sha512 = "3bB+Vc4kqvZYF8NW9D77HcIQpqwfLM3MvQEDjRvKEFeN+ZdJ9jtmcg+CUPm7li6xMkYWyFJcOSyI8kMYRfYFcw=="; }; }; "walk-2.3.14" = { @@ -34801,13 +36792,13 @@ let sha1 = "79691584d98607f5070bd3b70a40e6bb22e401eb"; }; }; - "webassemblyjs-1.7.8" = { + "webassemblyjs-1.7.11" = { name = "webassemblyjs"; packageName = "webassemblyjs"; - version = "1.7.8"; + version = "1.7.11"; src = fetchurl { - url = "https://registry.npmjs.org/webassemblyjs/-/webassemblyjs-1.7.8.tgz"; - sha512 = "7J64n2yTf2apgtRJypiHUFNRc2twQrMAFIWsm8u4qih7nG+sry2Bna1zq3qFI35fazIF1m42VGHHvdp9bBXmBA=="; + url = "https://registry.npmjs.org/webassemblyjs/-/webassemblyjs-1.7.11.tgz"; + sha512 = "vTwNncSEfuE51O1yHdcsino4LN1SYCiI4ws9OU1cImsqJ3vsydceDtzPcYXPFHm6Tie1ZH0HobXpYFExjronYw=="; }; }; "webidl-conversions-2.0.1" = { @@ -34828,6 +36819,33 @@ let sha512 = "YQ+BmxuTgd6UXZW3+ICGfyqRyHXVlD5GtQr5+qjiNW7bF0cqrzX500HVXPBOvgXb5YnzDd+h0zqyv61KUD7+Sg=="; }; }; + "webpack-4.25.1" = { + name = "webpack"; + packageName = "webpack"; + version = "4.25.1"; + src = fetchurl { + url = "https://registry.npmjs.org/webpack/-/webpack-4.25.1.tgz"; + sha512 = "T0GU/3NRtO4tMfNzsvpdhUr8HnzA4LTdP2zd+e5zd6CdOH5vNKHnAlO+DvzccfhPdzqRrALOFcjYxx7K5DWmvA=="; + }; + }; + "webpack-cli-3.1.2" = { + name = "webpack-cli"; + packageName = "webpack-cli"; + version = "3.1.2"; + src = fetchurl { + url = "https://registry.npmjs.org/webpack-cli/-/webpack-cli-3.1.2.tgz"; + sha512 = "Cnqo7CeqeSvC6PTdts+dywNi5CRlIPbLx1AoUPK2T6vC1YAugMG3IOoO9DmEscd+Dghw7uRlnzV1KwOe5IrtgQ=="; + }; + }; + "webpack-core-0.6.9" = { + name = "webpack-core"; + packageName = "webpack-core"; + version = "0.6.9"; + src = fetchurl { + url = "https://registry.npmjs.org/webpack-core/-/webpack-core-0.6.9.tgz"; + sha1 = "fc571588c8558da77be9efb6debdc5a3b172bdc2"; + }; + }; "webpack-sources-1.3.0" = { name = "webpack-sources"; packageName = "webpack-sources"; @@ -34882,15 +36900,6 @@ let sha512 = "dcQ1GWpOD/eEQ97k66aiEVpNnapVj90/+R+SXTPYGHpYBBypfKJEQjLrvMZ7YXbKm21gXd4NcuxUTjiv1YtLng=="; }; }; - "whatwg-url-6.5.0" = { - name = "whatwg-url"; - packageName = "whatwg-url"; - version = "6.5.0"; - src = fetchurl { - url = "https://registry.npmjs.org/whatwg-url/-/whatwg-url-6.5.0.tgz"; - sha512 = "rhRZRqx/TLJQWUpQ6bmrt2UV4f0HCQ463yQuONJqC6fO2VoEb1pTYddbe59SkYq87aoM5A3bdhMZiUiVws+fzQ=="; - }; - }; "whatwg-url-7.0.0" = { name = "whatwg-url"; packageName = "whatwg-url"; @@ -34990,6 +36999,15 @@ let sha1 = "670b3afbc552e0b55df6b7780ca74615f23ad1cb"; }; }; + "which-promise-1.0.0" = { + name = "which-promise"; + packageName = "which-promise"; + version = "1.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/which-promise/-/which-promise-1.0.0.tgz"; + sha1 = "20b721df05b35b706176ffa10b0909aba4603035"; + }; + }; "wide-align-1.1.3" = { name = "wide-align"; packageName = "wide-align"; @@ -34999,13 +37017,13 @@ let sha512 = "QGkOQc8XL6Bt5PwnsExKBPuMKBxnGxWWW3fU55Xt4feHozMUhdUMaBCk290qpm/wG5u/RSKzwdAC4i51YigihA=="; }; }; - "widest-line-2.0.0" = { + "widest-line-2.0.1" = { name = "widest-line"; packageName = "widest-line"; - version = "2.0.0"; + version = "2.0.1"; src = fetchurl { - url = "https://registry.npmjs.org/widest-line/-/widest-line-2.0.0.tgz"; - sha1 = "0142a4e8a243f8882c0233aa0e0281aa76152273"; + url = "https://registry.npmjs.org/widest-line/-/widest-line-2.0.1.tgz"; + sha512 = "Ba5m9/Fa4Xt9eb2ELXt77JxVDV8w7qQrH0zS/TWSJdLyAwQjWoOzpzj5lwVftDz6n/EOu3tNACS84v509qwnJA=="; }; }; "win-detect-browsers-1.0.2" = { @@ -35810,22 +37828,22 @@ let sha512 = "Rjp+lMYQOWtgqojx1dEWorjCofi1YN7AoFvYV7b1gx/7dAAeuI4kN5SZiEvr0ZmsZTOpDRcCqrpI10L31tFkBw=="; }; }; - "yargs-12.0.1" = { + "yargs-12.0.2" = { name = "yargs"; packageName = "yargs"; - version = "12.0.1"; + version = "12.0.2"; src = fetchurl { - url = "https://registry.npmjs.org/yargs/-/yargs-12.0.1.tgz"; - sha512 = "B0vRAp1hRX4jgIOWFtjfNjd9OA9RWYZ6tqGA9/I/IrTMsxmKvtWy+ersM+jzpQqbC3YfLzeABPdeTgcJ9eu1qQ=="; + url = "https://registry.npmjs.org/yargs/-/yargs-12.0.2.tgz"; + sha512 = "e7SkEx6N6SIZ5c5H22RTZae61qtn3PYUE8JYbBFlK9sYmh3DMQ6E5ygtaG/2BW0JZi4WGgTR2IV5ChqlqrDGVQ=="; }; }; - "yargs-12.0.2" = { + "yargs-12.0.4" = { name = "yargs"; packageName = "yargs"; - version = "12.0.2"; + version = "12.0.4"; src = fetchurl { - url = "https://registry.npmjs.org/yargs/-/yargs-12.0.2.tgz"; - sha512 = "e7SkEx6N6SIZ5c5H22RTZae61qtn3PYUE8JYbBFlK9sYmh3DMQ6E5ygtaG/2BW0JZi4WGgTR2IV5ChqlqrDGVQ=="; + url = "https://registry.npmjs.org/yargs/-/yargs-12.0.4.tgz"; + sha512 = "f5esswlPO351AnejaO2A1ZZr0zesz19RehQKwiRDqWtrraWrJy16tsUIKgDXFMVytvNOHPVmTiaTh3wO67I0fQ=="; }; }; "yargs-3.10.0" = { @@ -35891,6 +37909,15 @@ let sha512 = "VCIyR1wJoEBZUqk5PA+oOBF6ypbwh5aNB3I50guxAL/quggdfs4TtNHQrSazFA3fYZ+tEqfs0zIGlv0c/rgjbQ=="; }; }; + "yargs-parser-11.1.0" = { + name = "yargs-parser"; + packageName = "yargs-parser"; + version = "11.1.0"; + src = fetchurl { + url = "https://registry.npmjs.org/yargs-parser/-/yargs-parser-11.1.0.tgz"; + sha512 = "lGA5HsbjkpCfekDBHAhgE5OE8xEoqiUDylowr+BvhRCwG1xVYTsd8hx2CYC0NY4k9RIgJeybFTG2EZW4P2aN1w=="; + }; + }; "yargs-parser-4.2.1" = { name = "yargs-parser"; packageName = "yargs-parser"; @@ -35990,13 +38017,13 @@ let sha512 = "/KbouQdKgnqxG6K3Tc8VBPAQLPbruQ7KkbinwR+ah507oOFobHnGs8kqj8oMfafY6rXInHdh7nC5YzicCR4Z0g=="; }; }; - "yeoman-environment-2.3.3" = { + "yeoman-environment-2.3.4" = { name = "yeoman-environment"; packageName = "yeoman-environment"; - version = "2.3.3"; + version = "2.3.4"; src = fetchurl { - url = "https://registry.npmjs.org/yeoman-environment/-/yeoman-environment-2.3.3.tgz"; - sha512 = "HBpXdNw8V66EwqIFt01rNhSgX33BOzgVb9CxpIvESvCI4ELeOSniB6gV6RXwrBur8kmHZCIAkYQYpib7Qxx8FQ=="; + url = "https://registry.npmjs.org/yeoman-environment/-/yeoman-environment-2.3.4.tgz"; + sha512 = "KLxE5ft/74Qj7h3AsQZv8G6MEEHYJwmD5F99nfOVaep3rBzCtbrJKkdqWc7bDV141Nr8UZZsIXmzc3IcCm6E2w=="; }; }; "yn-2.0.0" = { @@ -36035,13 +38062,13 @@ let sha512 = "Dhp/R0pqSHj3vPs5O1gVd9kZx5Iew2lqVcfJQOBHx3llM/dLea8vl9wSa9FK8wLdSBQJ6mmgKi9+Rk2DRH3i9Q=="; }; }; - "zen-observable-0.8.9" = { + "zen-observable-0.8.11" = { name = "zen-observable"; packageName = "zen-observable"; - version = "0.8.9"; + version = "0.8.11"; src = fetchurl { - url = "https://registry.npmjs.org/zen-observable/-/zen-observable-0.8.9.tgz"; - sha512 = "Y9kPzjGvIZ5jchSlqlCpBW3I82zBBL4z+ulXDRVA1NwsKzjt5kwAi+gOYIy0htNkfuehGZZtP5mRXHRV6TjDWw=="; + url = "https://registry.npmjs.org/zen-observable/-/zen-observable-0.8.11.tgz"; + sha512 = "N3xXQVr4L61rZvGMpWe8XoCGX8vhU35dPyQ4fm5CY/KDlG0F75un14hjbckPXTDuKUY6V0dqR2giT6xN8Y4GEQ=="; }; }; "zen-observable-ts-0.8.10" = { @@ -36113,10 +38140,10 @@ in alloy = nodeEnv.buildNodePackage { name = "alloy"; packageName = "alloy"; - version = "1.13.3"; + version = "1.13.4"; src = fetchurl { - url = "https://registry.npmjs.org/alloy/-/alloy-1.13.3.tgz"; - sha512 = "IU15/1dufp+iI9FmXshIo9z9x4HmDk5Wslo2VkHlA1k8pYzHQ3XapRflDkEdV1tZ9LXTEMJW40t8mnWLjZjDqg=="; + url = "https://registry.npmjs.org/alloy/-/alloy-1.13.4.tgz"; + sha512 = "EjH9edCzDZzUFj5Cko6Za/nd9pQsxwL/kza+EI8sfH0UFA8YYuFBriOITnE/T9E4bJC3kEJEakGKaag0CcGWbw=="; }; dependencies = [ sources."JSV-4.0.2" @@ -36171,7 +38198,7 @@ in ]; }) sources."globals-9.18.0" - sources."graceful-fs-4.1.11" + sources."graceful-fs-4.1.15" sources."has-ansi-2.0.0" sources."has-color-0.1.7" sources."home-or-tmp-2.0.0" @@ -36283,16 +38310,12 @@ in sources."fast-deep-equal-1.1.0" sources."fast-json-stable-stringify-2.0.0" sources."forever-agent-0.6.1" - (sources."form-data-2.3.2" // { - dependencies = [ - sources."combined-stream-1.0.6" - ]; - }) + sources."form-data-2.3.3" sources."fs-extra-0.26.7" sources."fs.realpath-1.0.0" sources."getpass-0.1.7" sources."glob-6.0.4" - sources."graceful-fs-4.1.11" + sources."graceful-fs-4.1.15" sources."har-schema-2.0.0" sources."har-validator-5.1.0" sources."http-signature-1.2.0" @@ -36308,8 +38331,8 @@ in sources."jsonfile-2.4.0" sources."jsprim-1.4.1" sources."klaw-1.3.1" - sources."mime-db-1.36.0" - sources."mime-types-2.1.20" + sources."mime-db-1.37.0" + sources."mime-types-2.1.21" sources."minimatch-3.0.4" sources."minimist-0.0.8" sources."mkdirp-0.5.1" @@ -36334,7 +38357,7 @@ in }) sources."safe-buffer-5.1.2" sources."safer-buffer-2.1.2" - sources."sshpk-1.15.1" + sources."sshpk-1.15.2" sources."string_decoder-0.10.31" sources."tmp-0.0.28" (sources."touch-0.0.3" // { @@ -36368,7 +38391,7 @@ in sha512 = "MMiK5sFfIocNMWCc5PshUCAe6aY4P13/GCmSwudOziA/pFdQMHU8jhu+jU2SSWFug4K1ugeuCwtMXe43oL0PhQ=="; }; dependencies = [ - sources."@types/node-8.10.36" + sources."@types/node-8.10.37" sources."JSV-4.0.2" sources."adal-node-0.1.28" sources."ajv-5.5.2" @@ -36384,9 +38407,9 @@ in sources."aws-sign2-0.6.0" sources."aws4-1.8.0" sources."azure-arm-authorization-2.0.0" - sources."azure-arm-batch-3.1.2" - sources."azure-arm-cdn-4.0.2" - sources."azure-arm-commerce-2.0.0" + sources."azure-arm-batch-3.2.0" + sources."azure-arm-cdn-4.1.0" + sources."azure-arm-commerce-2.1.0" sources."azure-arm-compute-3.0.0-preview" (sources."azure-arm-datalake-analytics-1.0.2-preview" // { dependencies = [ @@ -36431,11 +38454,11 @@ in sources."request-2.74.0" ]; }) - sources."azure-arm-resource-7.0.0" + sources."azure-arm-resource-7.1.0" sources."azure-arm-servermanagement-1.1.0" sources."azure-arm-storage-5.2.0" sources."azure-arm-trafficmanager-1.1.0-preview" - sources."azure-arm-website-5.3.0" + sources."azure-arm-website-5.6.0" sources."azure-asm-compute-0.18.0" sources."azure-asm-hdinsight-0.10.2" sources."azure-asm-mgmt-0.10.1" @@ -36469,14 +38492,14 @@ in sources."underscore-1.9.1" ]; }) - sources."azure-servicefabric-2.0.0" - (sources."azure-storage-2.10.1" // { + sources."azure-servicefabric-2.1.0" + (sources."azure-storage-2.10.2" // { dependencies = [ - sources."extend-1.2.1" sources."readable-stream-2.0.6" sources."underscore-1.8.3" sources."validator-9.4.1" sources."xml2js-0.2.8" + sources."xmlbuilder-9.0.7" ]; }) sources."balanced-match-1.0.0" @@ -36607,8 +38630,8 @@ in sources."lodash-4.17.11" sources."map-stream-0.1.0" sources."md5.js-1.3.4" - sources."mime-db-1.36.0" - sources."mime-types-2.1.20" + sources."mime-db-1.37.0" + sources."mime-types-2.1.21" sources."minimatch-3.0.4" sources."minimist-0.0.8" sources."mkdirp-0.5.1" @@ -36675,11 +38698,7 @@ in sources."assert-plus-1.0.0" sources."aws-sign2-0.7.0" sources."caseless-0.12.0" - (sources."form-data-2.3.2" // { - dependencies = [ - sources."combined-stream-1.0.6" - ]; - }) + sources."form-data-2.3.3" sources."har-validator-5.1.0" sources."http-signature-1.2.0" sources."oauth-sign-0.9.0" @@ -36701,7 +38720,7 @@ in sources."asn1-0.1.11" ]; }) - (sources."sshpk-1.15.1" // { + (sources."sshpk-1.15.2" // { dependencies = [ sources."assert-plus-1.0.0" ]; @@ -36762,6 +38781,76 @@ in production = true; bypassCache = true; }; + azure-functions-core-tools = nodeEnv.buildNodePackage { + name = "azure-functions-core-tools"; + packageName = "azure-functions-core-tools"; + version = "2.1.748"; + src = fetchurl { + url = "https://registry.npmjs.org/azure-functions-core-tools/-/azure-functions-core-tools-2.1.748.tgz"; + sha512 = "Zi4/o7479cSZ0Ln5Ygf2FPdN5G2uXOOnoPG/8GGBQkdCkOtYECiOy5Py4A21MHJ/XvfIY4cRH7EVkbzZN5Cwwg=="; + }; + dependencies = [ + sources."agent-base-4.2.1" + sources."ansi-styles-3.2.1" + sources."balanced-match-1.0.0" + sources."big-integer-1.6.36" + sources."binary-0.3.0" + sources."bluebird-3.4.7" + sources."brace-expansion-1.1.11" + sources."buffer-indexof-polyfill-1.0.1" + sources."buffers-0.1.1" + sources."chainsaw-0.1.0" + sources."chalk-2.4.1" + sources."color-convert-1.9.3" + sources."color-name-1.1.3" + sources."command-exists-1.2.8" + sources."concat-map-0.0.1" + sources."core-util-is-1.0.2" + sources."debug-3.2.6" + sources."duplexer2-0.1.4" + sources."es6-promise-4.2.5" + sources."es6-promisify-5.0.0" + sources."escape-string-regexp-1.0.5" + sources."fs.realpath-1.0.0" + sources."fstream-1.0.11" + sources."glob-7.1.3" + sources."graceful-fs-4.1.15" + sources."has-flag-3.0.0" + sources."https-proxy-agent-2.2.1" + sources."inflight-1.0.6" + sources."inherits-2.0.3" + sources."isarray-1.0.0" + sources."listenercount-1.0.1" + sources."minimatch-3.0.4" + sources."minimist-0.0.8" + sources."mkdirp-0.5.1" + sources."ms-2.1.1" + sources."once-1.4.0" + sources."os-tmpdir-1.0.2" + sources."path-is-absolute-1.0.1" + sources."process-nextick-args-2.0.0" + sources."progress-2.0.1" + sources."readable-stream-2.3.6" + sources."rimraf-2.6.2" + sources."safe-buffer-5.1.2" + sources."setimmediate-1.0.5" + sources."string_decoder-1.1.1" + sources."supports-color-5.5.0" + sources."tmp-0.0.33" + sources."traverse-0.3.9" + sources."unzipper-0.9.4" + sources."util-deprecate-1.0.2" + sources."wrappy-1.0.2" + ]; + buildInputs = globalBuildInputs; + meta = { + description = "Azure Functions Core Tools"; + homepage = "https://github.com/Azure/azure-functions-core-tools#readme"; + license = "MIT"; + }; + production = true; + bypassCache = true; + }; bower = nodeEnv.buildNodePackage { name = "bower"; packageName = "bower"; @@ -36811,7 +38900,7 @@ in sources."find-up-1.1.2" (sources."fs-extra-0.26.7" // { dependencies = [ - sources."graceful-fs-4.1.11" + sources."graceful-fs-4.1.15" ]; }) sources."fs.realpath-1.0.0" @@ -36830,24 +38919,24 @@ in sources."is-utf8-0.2.1" (sources."jsonfile-2.4.0" // { dependencies = [ - sources."graceful-fs-4.1.11" + sources."graceful-fs-4.1.15" ]; }) (sources."klaw-1.3.1" // { dependencies = [ - sources."graceful-fs-4.1.11" + sources."graceful-fs-4.1.15" ]; }) (sources."load-json-file-1.1.0" // { dependencies = [ - sources."graceful-fs-4.1.11" + sources."graceful-fs-4.1.15" ]; }) sources."lodash-4.2.1" sources."loud-rejection-1.6.0" sources."map-obj-1.0.1" sources."meow-3.7.0" - sources."mime-db-1.36.0" + sources."mime-db-1.37.0" sources."minimatch-3.0.4" sources."minimist-1.2.0" (sources."mkdirp-0.5.1" // { @@ -36867,7 +38956,7 @@ in sources."path-is-absolute-1.0.1" (sources."path-type-1.1.0" // { dependencies = [ - sources."graceful-fs-4.1.11" + sources."graceful-fs-4.1.15" ]; }) sources."pify-2.3.0" @@ -36891,7 +38980,7 @@ in sources."spdx-correct-3.0.2" sources."spdx-exceptions-2.2.0" sources."spdx-expression-parse-3.0.0" - sources."spdx-license-ids-3.0.1" + sources."spdx-license-ids-3.0.2" sources."sprintf-js-1.0.3" sources."strip-bom-2.0.0" sources."strip-indent-1.0.1" @@ -36923,8 +39012,9 @@ in }; dependencies = [ sources."JSONStream-1.3.5" - sources."acorn-6.0.2" - sources."acorn-node-1.6.0" + sources."acorn-6.0.4" + sources."acorn-dynamic-import-4.0.0" + sources."acorn-node-1.6.2" sources."acorn-walk-6.1.0" sources."array-filter-0.0.1" sources."array-map-0.0.0" @@ -36957,7 +39047,7 @@ in sources."buffer-from-1.1.1" sources."buffer-xor-1.0.3" sources."builtin-status-codes-3.0.0" - sources."cached-path-relative-1.0.1" + sources."cached-path-relative-1.0.2" sources."cipher-base-1.0.4" sources."combine-source-map-0.8.0" sources."concat-map-0.0.1" @@ -37059,7 +39149,7 @@ in }) sources."syntax-error-1.4.0" sources."through-2.3.8" - sources."through2-2.0.3" + sources."through2-2.0.5" sources."timers-browserify-1.4.2" sources."to-arraybuffer-1.0.1" sources."tty-browserify-0.0.1" @@ -37197,7 +39287,7 @@ in dependencies = [ sources."minimist-0.0.8" sources."mkdirp-0.5.1" - sources."thunky-1.0.2" + sources."thunky-1.0.3" ]; }) sources."fs.realpath-1.0.0" @@ -37205,7 +39295,7 @@ in sources."get-stdin-4.0.1" sources."glob-7.1.3" sources."got-1.2.2" - sources."graceful-fs-4.1.11" + sources."graceful-fs-4.1.15" sources."has-ansi-1.0.3" sources."hat-0.0.3" sources."hawk-0.10.2" @@ -37397,7 +39487,7 @@ in sources."spdx-correct-3.0.2" sources."spdx-exceptions-2.2.0" sources."spdx-expression-parse-3.0.0" - sources."spdx-license-ids-3.0.1" + sources."spdx-license-ids-3.0.2" sources."speedometer-0.1.4" sources."srt2vtt-1.3.1" sources."stream-transcoder-0.0.5" @@ -37626,9 +39716,10 @@ in sources."abbrev-1.1.1" sources."accepts-1.3.5" sources."acorn-5.7.3" - (sources."acorn-node-1.6.0" // { + sources."acorn-dynamic-import-4.0.0" + (sources."acorn-node-1.6.2" // { dependencies = [ - sources."acorn-6.0.2" + sources."acorn-6.0.4" ]; }) sources."acorn-walk-6.1.0" @@ -37700,7 +39791,7 @@ in sources."builtin-status-codes-3.0.0" sources."builtins-1.0.3" sources."bytes-3.0.0" - sources."cached-path-relative-1.0.1" + sources."cached-path-relative-1.0.2" sources."camelcase-4.1.0" sources."capture-stack-trace-1.0.1" sources."caseless-0.12.0" @@ -37820,11 +39911,7 @@ in sources."finalhandler-1.1.1" sources."foreach-2.0.5" sources."forever-agent-0.6.1" - (sources."form-data-2.3.2" // { - dependencies = [ - sources."combined-stream-1.0.6" - ]; - }) + sources."form-data-2.3.3" sources."forwarded-0.1.2" sources."fresh-0.5.2" sources."fs.realpath-1.0.0" @@ -37836,7 +39923,7 @@ in sources."glob-5.0.15" sources."global-dirs-0.1.1" sources."got-6.7.1" - sources."graceful-fs-4.1.11" + sources."graceful-fs-4.1.15" sources."har-schema-2.0.0" sources."har-validator-5.1.0" sources."has-1.0.3" @@ -37930,8 +40017,8 @@ in sources."methods-1.1.2" sources."miller-rabin-4.0.1" sources."mime-1.4.1" - sources."mime-db-1.36.0" - sources."mime-types-2.1.20" + sources."mime-db-1.37.0" + sources."mime-types-2.1.21" sources."minimalistic-assert-1.0.1" sources."minimalistic-crypto-utils-1.0.1" sources."minimatch-3.0.4" @@ -38064,8 +40151,8 @@ in sources."spdx-correct-3.0.2" sources."spdx-exceptions-2.2.0" sources."spdx-expression-parse-3.0.0" - sources."spdx-license-ids-3.0.1" - sources."sshpk-1.15.1" + sources."spdx-license-ids-3.0.2" + sources."sshpk-1.15.2" sources."statuses-1.4.0" sources."stream-browserify-2.0.1" sources."stream-buffers-2.2.0" @@ -38090,7 +40177,7 @@ in sources."tar-2.2.1" sources."term-size-1.2.0" sources."through-2.3.8" - sources."through2-2.0.3" + sources."through2-2.0.5" sources."timed-out-4.0.1" sources."timers-browserify-1.4.2" sources."to-arraybuffer-1.0.1" @@ -38131,7 +40218,7 @@ in sources."verror-1.10.0" sources."vm-browserify-0.0.4" sources."which-1.3.1" - sources."widest-line-2.0.0" + sources."widest-line-2.0.1" sources."win-release-1.1.1" sources."wrappy-1.0.2" sources."write-file-atomic-2.3.0" @@ -38174,7 +40261,7 @@ in sources."@cycle/run-3.4.0" sources."@cycle/time-0.10.1" sources."@types/cookiejar-2.1.0" - sources."@types/node-10.11.7" + sources."@types/node-10.12.5" sources."@types/superagent-3.8.2" sources."ansi-escapes-3.1.0" sources."ansi-regex-2.1.1" @@ -38192,7 +40279,7 @@ in sources."color-convert-1.9.3" sources."color-name-1.1.3" sources."combine-errors-3.0.3" - sources."combined-stream-1.0.6" + sources."combined-stream-1.0.7" sources."component-emitter-1.2.1" sources."cookiejar-2.1.2" sources."core-util-is-1.0.2" @@ -38213,7 +40300,7 @@ in sources."extend-3.0.2" sources."external-editor-2.2.0" sources."figures-2.0.0" - sources."form-data-2.3.2" + sources."form-data-2.3.3" sources."formidable-1.2.1" sources."has-ansi-2.0.0" sources."has-flag-3.0.0" @@ -38240,8 +40327,8 @@ in sources."lru-cache-4.1.3" sources."methods-1.1.2" sources."mime-1.6.0" - sources."mime-db-1.36.0" - sources."mime-types-2.1.20" + sources."mime-db-1.37.0" + sources."mime-types-2.1.21" sources."mimic-fn-1.2.0" sources."minimist-1.2.0" sources."ms-2.1.1" @@ -38305,10 +40392,10 @@ in create-react-app = nodeEnv.buildNodePackage { name = "create-react-app"; packageName = "create-react-app"; - version = "2.0.4"; + version = "2.1.1"; src = fetchurl { - url = "https://registry.npmjs.org/create-react-app/-/create-react-app-2.0.4.tgz"; - sha512 = "8FP0i8GNAVADIH6zc1INmpkxDZADi+wWNOveq/ja/vjpkfgXcHd0bglNC5mg03cVmJUZWm/Am9qNY1IsUW+PGQ=="; + url = "https://registry.npmjs.org/create-react-app/-/create-react-app-2.1.1.tgz"; + sha512 = "ZCDwk0joko6JqKscWEaNPs32GyxVQZOIXxa7KmzZwnxiUyWfsWoiXfbivK5KyPnUT8AYztexCH9VI0tBTiqlsg=="; }; dependencies = [ sources."ansi-regex-2.1.1" @@ -38332,7 +40419,7 @@ in sources."fstream-1.0.11" sources."fstream-ignore-1.0.5" sources."glob-7.1.3" - sources."graceful-fs-4.1.11" + sources."graceful-fs-4.1.15" sources."has-ansi-2.0.0" sources."hyperquest-2.1.3" sources."inflight-1.0.6" @@ -38407,7 +40494,7 @@ in sources."cross-spawn-5.1.0" sources."escape-string-regexp-1.0.5" sources."fs-extra-4.0.3" - sources."graceful-fs-4.1.11" + sources."graceful-fs-4.1.15" sources."has-flag-3.0.0" sources."isexe-2.0.0" sources."jsonfile-4.0.0" @@ -38618,11 +40705,7 @@ in sources."for-in-1.0.2" sources."for-own-0.1.5" sources."forever-agent-0.6.1" - (sources."form-data-2.3.2" // { - dependencies = [ - sources."combined-stream-1.0.6" - ]; - }) + sources."form-data-2.3.3" sources."from2-2.3.0" sources."fs.realpath-1.0.0" sources."get-stream-3.0.0" @@ -38633,13 +40716,13 @@ in sources."global-4.3.2" sources."global-dirs-0.1.1" sources."got-6.7.1" - sources."graceful-fs-4.1.11" + sources."graceful-fs-4.1.15" sources."har-schema-2.0.0" sources."har-validator-5.1.0" sources."has-flag-3.0.0" sources."http-methods-0.1.0" sources."http-signature-1.2.0" - (sources."hypercore-6.20.2" // { + (sources."hypercore-6.21.0" // { dependencies = [ sources."process-nextick-args-1.0.7" sources."unordered-set-2.0.1" @@ -38722,8 +40805,8 @@ in sources."merkle-tree-stream-3.0.3" sources."micromatch-2.3.11" sources."mime-2.3.1" - sources."mime-db-1.36.0" - sources."mime-types-2.1.20" + sources."mime-db-1.37.0" + sources."mime-types-2.1.21" sources."min-document-2.19.0" sources."minimatch-3.0.4" sources."minimist-1.2.0" @@ -38742,7 +40825,7 @@ in sources."mutexify-1.2.0" sources."nan-2.11.1" sources."nanoassert-1.1.0" - sources."nanobus-4.3.4" + sources."nanobus-4.3.5" sources."nanoscheduler-1.0.3" sources."nanotiming-7.3.1" sources."ncp-1.0.1" @@ -38790,7 +40873,7 @@ in sources."random-access-file-2.0.1" sources."random-access-memory-3.0.0" sources."random-access-storage-1.3.0" - (sources."randomatic-3.1.0" // { + (sources."randomatic-3.1.1" // { dependencies = [ sources."is-number-4.0.0" sources."kind-of-6.0.2" @@ -38829,13 +40912,13 @@ in sources."siphash24-1.1.1" sources."slice-ansi-1.0.0" sources."sodium-javascript-0.5.5" - sources."sodium-native-2.2.2" + sources."sodium-native-2.2.3" sources."sodium-universal-2.0.0" sources."sorted-array-functions-1.2.0" sources."sorted-indexof-1.0.0" sources."sparse-bitfield-3.0.3" sources."speedometer-1.1.0" - sources."sshpk-1.15.1" + sources."sshpk-1.15.2" sources."stack-trace-0.0.10" sources."stream-collector-1.0.1" sources."stream-each-1.2.3" @@ -38858,7 +40941,7 @@ in sources."supports-color-5.5.0" sources."term-size-1.2.0" sources."throttle-1.0.3" - sources."thunky-1.0.2" + sources."thunky-1.0.3" sources."timed-out-4.0.1" sources."to-buffer-1.1.1" (sources."toiletdb-1.4.1" // { @@ -38889,7 +40972,7 @@ in sources."varint-3.0.1" sources."verror-1.10.0" sources."which-1.3.1" - sources."widest-line-2.0.0" + sources."widest-line-2.0.1" (sources."winston-2.1.1" // { dependencies = [ sources."async-1.0.0" @@ -38985,7 +41068,7 @@ in sources."fresh-0.2.4" sources."from-0.1.7" sources."hiredis-0.4.1" - sources."http-parser-js-0.4.13" + sources."http-parser-js-0.5.0" sources."inherits-2.0.3" sources."ini-1.3.5" sources."ipaddr.js-1.0.5" @@ -39004,8 +41087,8 @@ in sources."merge-descriptors-0.0.2" sources."methods-1.1.2" sources."mime-1.2.11" - sources."mime-db-1.36.0" - sources."mime-types-2.1.20" + sources."mime-db-1.37.0" + sources."mime-types-2.1.21" sources."minimist-0.0.10" sources."ms-0.7.0" sources."nan-2.11.1" @@ -39105,7 +41188,7 @@ in sources."bytewise-core-1.2.3" sources."cookie-signature-1.1.0" sources."core-util-is-1.0.2" - sources."cors-2.8.4" + sources."cors-2.8.5" sources."deferred-leveldown-0.2.0" sources."docker-parse-image-3.0.1" (sources."duplexify-3.6.1" // { @@ -39173,7 +41256,7 @@ in sources."readable-stream-2.3.6" sources."split2-2.2.0" sources."string_decoder-1.1.1" - sources."through2-2.0.3" + sources."through2-2.0.5" ]; }) sources."network-address-0.0.5" @@ -39246,10 +41329,10 @@ in elasticdump = nodeEnv.buildNodePackage { name = "elasticdump"; packageName = "elasticdump"; - version = "4.0.3"; + version = "4.1.1"; src = fetchurl { - url = "https://registry.npmjs.org/elasticdump/-/elasticdump-4.0.3.tgz"; - sha512 = "Rxbsh4LWdIlMUO+NxET9g1xHZ9Q93i7jtPESYcCyEOnRiSsZXi/AF6UmCdvmM38IgHrklI2e4DwuG1OwRIGQAA=="; + url = "https://registry.npmjs.org/elasticdump/-/elasticdump-4.1.1.tgz"; + sha512 = "xOHUFO48K7bHLhx8hVuIZlz7i8Zn8NVmsMGqx1YUGhsmSb1zwW/dCUfBqEHvH4iPtJf9pQPpc51wad0SmvR5XQ=="; }; dependencies = [ sources."JSONStream-1.3.5" @@ -39258,12 +41341,13 @@ in sources."assert-plus-1.0.0" sources."async-2.6.1" sources."asynckit-0.4.0" - sources."aws-sdk-2.334.0" + sources."aws-sdk-2.353.0" sources."aws-sign2-0.7.0" sources."aws4-1.8.0" sources."base64-js-1.3.0" sources."bcrypt-pbkdf-1.0.2" sources."buffer-4.9.1" + sources."buffer-queue-1.0.0" sources."bytes-3.0.0" sources."caseless-0.12.0" sources."co-4.6.0" @@ -39279,16 +41363,13 @@ in sources."fast-deep-equal-1.1.0" sources."fast-json-stable-stringify-2.0.0" sources."forever-agent-0.6.1" - (sources."form-data-2.3.2" // { - dependencies = [ - sources."combined-stream-1.0.6" - ]; - }) + sources."form-data-2.3.3" sources."getpass-0.1.7" sources."har-schema-2.0.0" sources."har-validator-5.1.0" sources."http-signature-1.2.0" sources."ieee754-1.1.8" + sources."inherits-2.0.3" sources."ini-1.3.5" sources."is-typedarray-1.0.0" sources."isarray-1.0.0" @@ -39302,26 +41383,30 @@ in sources."jsprim-1.4.1" sources."lodash-4.17.11" sources."lossless-json-1.0.3" - sources."mime-db-1.36.0" - sources."mime-types-2.1.20" + sources."mime-db-1.37.0" + sources."mime-types-2.1.21" sources."minimist-0.0.10" sources."oauth-sign-0.9.0" sources."optimist-0.6.1" sources."performance-now-2.1.0" + sources."process-nextick-args-2.0.0" sources."psl-1.1.29" sources."punycode-1.3.2" sources."qs-6.5.2" sources."querystring-0.2.0" + sources."readable-stream-2.3.6" (sources."request-2.88.0" // { dependencies = [ sources."uuid-3.3.2" ]; }) - sources."requestretry-3.0.1" + sources."requestretry-3.0.2" + sources."s3-stream-upload-2.0.2" sources."safe-buffer-5.1.2" sources."safer-buffer-2.1.2" sources."sax-1.2.1" - sources."sshpk-1.15.1" + sources."sshpk-1.15.2" + sources."string_decoder-1.1.1" sources."through-2.3.8" (sources."tough-cookie-2.4.3" // { dependencies = [ @@ -39331,6 +41416,7 @@ in sources."tunnel-agent-0.6.0" sources."tweetnacl-0.14.5" sources."url-0.10.3" + sources."util-deprecate-1.0.2" sources."uuid-3.1.0" sources."verror-1.10.0" sources."when-3.7.8" @@ -39494,11 +41580,7 @@ in sources."firstline-1.2.1" sources."for-in-1.0.2" sources."forever-agent-0.6.1" - (sources."form-data-2.3.2" // { - dependencies = [ - sources."combined-stream-1.0.6" - ]; - }) + sources."form-data-2.3.3" sources."fragment-cache-0.2.1" sources."fs-extra-0.30.0" sources."fs.realpath-1.0.0" @@ -39512,7 +41594,7 @@ in sources."is-glob-3.1.0" ]; }) - sources."graceful-fs-4.1.11" + sources."graceful-fs-4.1.15" sources."har-schema-2.0.0" sources."har-validator-5.1.0" sources."has-flag-2.0.0" @@ -39559,8 +41641,8 @@ in sources."map-cache-0.2.2" sources."map-visit-1.0.0" sources."micromatch-3.1.10" - sources."mime-db-1.36.0" - sources."mime-types-2.1.20" + sources."mime-db-1.37.0" + sources."mime-types-2.1.21" sources."minimatch-3.0.4" sources."minimist-1.2.0" sources."mixin-deep-1.3.1" @@ -39660,7 +41742,7 @@ in sources."source-map-url-0.4.0" sources."split-1.0.1" sources."split-string-3.1.0" - sources."sshpk-1.15.1" + sources."sshpk-1.15.2" (sources."static-extend-0.1.2" // { dependencies = [ sources."define-property-0.2.5" @@ -39807,7 +41889,7 @@ in sources."get-stream-3.0.0" sources."globals-9.18.0" sources."got-7.1.0" - sources."graceful-fs-4.1.11" + sources."graceful-fs-4.1.15" sources."has-ansi-3.0.0" sources."has-flag-3.0.0" sources."has-symbol-support-x-1.4.2" @@ -39929,7 +42011,7 @@ in sources."spdx-correct-3.0.2" sources."spdx-exceptions-2.2.0" sources."spdx-expression-parse-3.0.0" - sources."spdx-license-ids-3.0.1" + sources."spdx-license-ids-3.0.2" (sources."string-width-2.1.1" // { dependencies = [ sources."strip-ansi-4.0.0" @@ -39973,24 +42055,23 @@ in eslint = nodeEnv.buildNodePackage { name = "eslint"; packageName = "eslint"; - version = "5.7.0"; + version = "5.9.0"; src = fetchurl { - url = "https://registry.npmjs.org/eslint/-/eslint-5.7.0.tgz"; - sha512 = "zYCeFQahsxffGl87U2aJ7DPyH8CbWgxBC213Y8+TCanhUTf2gEvfq3EKpHmEcozTLyPmGe9LZdMAwC/CpJBM5A=="; + url = "https://registry.npmjs.org/eslint/-/eslint-5.9.0.tgz"; + sha512 = "g4KWpPdqN0nth+goDNICNXGfJF7nNnepthp46CAlJoJtC5K/cLu3NgCM3AHu1CkJ5Hzt9V0Y0PBAO6Ay/gGb+w=="; }; dependencies = [ sources."@babel/code-frame-7.0.0" sources."@babel/highlight-7.0.0" - sources."acorn-5.7.3" - sources."acorn-jsx-4.1.1" - sources."ajv-6.5.4" + sources."acorn-6.0.4" + sources."acorn-jsx-5.0.0" + sources."ajv-6.5.5" sources."ansi-escapes-3.1.0" sources."ansi-regex-3.0.0" sources."ansi-styles-3.2.1" sources."argparse-1.0.10" sources."array-union-1.0.2" sources."array-uniq-1.0.3" - sources."arrify-1.0.1" sources."balanced-match-1.0.0" sources."brace-expansion-1.1.11" sources."caller-path-0.1.0" @@ -40006,13 +42087,13 @@ in sources."cross-spawn-6.0.5" sources."debug-4.1.0" sources."deep-is-0.1.3" - sources."del-2.2.2" + sources."del-3.0.0" sources."doctrine-2.1.0" sources."escape-string-regexp-1.0.5" sources."eslint-scope-4.0.0" sources."eslint-utils-1.3.1" sources."eslint-visitor-keys-1.0.0" - sources."espree-4.0.0" + sources."espree-4.1.0" sources."esprima-4.0.1" sources."esquery-1.0.1" sources."esrecurse-4.2.1" @@ -40024,13 +42105,17 @@ in sources."fast-levenshtein-2.0.6" sources."figures-2.0.0" sources."file-entry-cache-2.0.0" - sources."flat-cache-1.3.0" + sources."flat-cache-1.3.2" sources."fs.realpath-1.0.0" sources."functional-red-black-tree-1.0.1" sources."glob-7.1.3" sources."globals-11.8.0" - sources."globby-5.0.0" - sources."graceful-fs-4.1.11" + (sources."globby-6.1.0" // { + dependencies = [ + sources."pify-2.3.0" + ]; + }) + sources."graceful-fs-4.1.15" sources."has-flag-3.0.0" sources."iconv-lite-0.4.24" sources."ignore-4.0.6" @@ -40064,15 +42149,16 @@ in sources."onetime-2.0.1" sources."optionator-0.8.2" sources."os-tmpdir-1.0.2" + sources."p-map-1.2.0" sources."path-is-absolute-1.0.1" sources."path-is-inside-1.0.2" sources."path-key-2.0.1" - sources."pify-2.3.0" + sources."pify-3.0.0" sources."pinkie-2.0.4" sources."pinkie-promise-2.0.1" sources."pluralize-7.0.0" sources."prelude-ls-1.1.2" - sources."progress-2.0.0" + sources."progress-2.0.1" sources."punycode-2.1.1" sources."regexpp-2.0.1" sources."require-uncached-1.0.3" @@ -40124,16 +42210,15 @@ in dependencies = [ sources."@babel/code-frame-7.0.0" sources."@babel/highlight-7.0.0" - sources."acorn-5.7.3" - sources."acorn-jsx-4.1.1" - sources."ajv-6.5.4" + sources."acorn-6.0.4" + sources."acorn-jsx-5.0.0" + sources."ajv-6.5.5" sources."ansi-escapes-3.1.0" sources."ansi-regex-3.0.0" sources."ansi-styles-3.2.1" sources."argparse-1.0.10" sources."array-union-1.0.2" sources."array-uniq-1.0.3" - sources."arrify-1.0.1" sources."balanced-match-1.0.0" sources."brace-expansion-1.1.11" sources."caller-path-0.1.0" @@ -40149,14 +42234,14 @@ in sources."cross-spawn-6.0.5" sources."debug-4.1.0" sources."deep-is-0.1.3" - sources."del-2.2.2" + sources."del-3.0.0" sources."doctrine-2.1.0" sources."escape-string-regexp-1.0.5" - sources."eslint-5.7.0" + sources."eslint-5.9.0" sources."eslint-scope-4.0.0" sources."eslint-utils-1.3.1" sources."eslint-visitor-keys-1.0.0" - sources."espree-4.0.0" + sources."espree-4.1.0" sources."esprima-4.0.1" sources."esquery-1.0.1" sources."esrecurse-4.2.1" @@ -40168,13 +42253,17 @@ in sources."fast-levenshtein-2.0.6" sources."figures-2.0.0" sources."file-entry-cache-2.0.0" - sources."flat-cache-1.3.0" + sources."flat-cache-1.3.2" sources."fs.realpath-1.0.0" sources."functional-red-black-tree-1.0.1" sources."glob-7.1.3" sources."globals-11.8.0" - sources."globby-5.0.0" - sources."graceful-fs-4.1.11" + (sources."globby-6.1.0" // { + dependencies = [ + sources."pify-2.3.0" + ]; + }) + sources."graceful-fs-4.1.15" sources."has-flag-3.0.0" sources."iconv-lite-0.4.24" sources."ignore-4.0.6" @@ -40209,16 +42298,17 @@ in sources."onetime-2.0.1" sources."optionator-0.8.2" sources."os-tmpdir-1.0.2" + sources."p-map-1.2.0" sources."path-is-absolute-1.0.1" sources."path-is-inside-1.0.2" sources."path-key-2.0.1" sources."path-parse-1.0.6" - sources."pify-2.3.0" + sources."pify-3.0.0" sources."pinkie-2.0.4" sources."pinkie-promise-2.0.1" sources."pluralize-7.0.0" sources."prelude-ls-1.1.2" - sources."progress-2.0.0" + sources."progress-2.0.1" sources."punycode-2.1.1" sources."regexpp-2.0.1" sources."require-uncached-1.0.3" @@ -40328,15 +42418,11 @@ in sources."fd-slicer-1.0.1" sources."find-up-1.1.2" sources."forever-agent-0.6.1" - (sources."form-data-2.3.2" // { - dependencies = [ - sources."combined-stream-1.0.6" - ]; - }) + sources."form-data-2.3.3" sources."fs-extra-1.0.0" sources."get-stdin-4.0.1" sources."getpass-0.1.7" - sources."graceful-fs-4.1.11" + sources."graceful-fs-4.1.15" sources."har-schema-2.0.0" sources."har-validator-5.1.0" sources."has-ansi-2.0.0" @@ -40375,8 +42461,8 @@ in sources."loud-rejection-1.6.0" sources."map-obj-1.0.1" sources."meow-3.7.0" - sources."mime-db-1.36.0" - sources."mime-types-2.1.20" + sources."mime-db-1.37.0" + sources."mime-types-2.1.21" sources."mimic-fn-1.2.0" sources."minimist-1.2.0" (sources."mkdirp-0.5.1" // { @@ -40433,8 +42519,8 @@ in sources."spdx-correct-3.0.2" sources."spdx-exceptions-2.2.0" sources."spdx-expression-parse-3.0.0" - sources."spdx-license-ids-3.0.1" - sources."sshpk-1.15.1" + sources."spdx-license-ids-3.0.2" + sources."sshpk-1.15.2" sources."string_decoder-1.1.1" sources."strip-ansi-3.0.1" sources."strip-bom-2.0.0" @@ -40604,7 +42690,7 @@ in sources."glob-7.1.3" sources."glob-base-0.3.0" sources."glob-parent-2.0.0" - sources."graceful-fs-4.1.11" + sources."graceful-fs-4.1.15" (sources."has-value-1.0.0" // { dependencies = [ sources."isobject-3.0.1" @@ -40737,7 +42823,7 @@ in sources."process-nextick-args-2.0.0" sources."prompt-0.2.14" sources."ps-tree-0.0.3" - (sources."randomatic-3.1.0" // { + (sources."randomatic-3.1.1" // { dependencies = [ sources."is-number-4.0.0" sources."kind-of-6.0.2" @@ -40923,7 +43009,7 @@ in sources."microee-0.0.6" sources."minilog-3.1.0" sources."ms-2.1.1" - sources."simple-git-1.105.0" + sources."simple-git-1.107.0" sources."tabtab-git+https://github.com/mixu/node-tabtab.git" ]; buildInputs = globalBuildInputs; @@ -40947,9 +43033,11 @@ in sources."asyncmemo-1.0.0" sources."chloride-2.2.10" sources."chloride-test-1.2.2" + sources."colors-0.5.1" sources."deep-equal-1.0.1" sources."deep-extend-0.6.0" sources."diff-3.5.0" + sources."discontinuous-range-1.0.0" sources."ed2curve-0.1.4" sources."emoji-named-characters-1.0.2" sources."explain-error-1.0.4" @@ -40959,12 +43047,13 @@ in sources."git-remote-ssb-2.0.4" sources."git-ssb-web-2.8.0" sources."hashlru-2.2.1" - sources."highlight.js-9.13.0" + sources."highlight.js-9.13.1" sources."increment-buffer-1.0.1" sources."inherits-2.0.3" sources."ini-1.3.5" sources."ip-1.1.5" - sources."is-electron-2.1.0" + sources."is-canonical-base64-1.1.1" + sources."is-electron-2.2.0" sources."is-my-ip-valid-1.0.0" sources."is-my-json-valid-2.19.0" sources."is-property-1.0.2" @@ -40977,8 +43066,8 @@ in sources."libsodium-wrappers-0.7.3" sources."looper-4.0.0" sources."lrucache-1.0.3" - sources."mime-db-1.36.0" - sources."mime-types-2.1.20" + sources."mime-db-1.37.0" + sources."mime-types-2.1.21" sources."minimist-1.2.0" (sources."mkdirp-0.5.1" // { dependencies = [ @@ -40986,12 +43075,16 @@ in ]; }) sources."moment-2.22.2" + sources."moo-0.4.3" sources."multicb-1.2.2" - sources."multiserver-1.13.5" + sources."multiserver-1.13.7" + sources."multiserver-address-1.0.1" sources."muxrpc-6.4.1" sources."nan-2.11.1" + sources."nearley-2.15.1" sources."node-gyp-build-3.5.0" sources."node-polyglot-1.0.0" + sources."nomnom-1.6.2" sources."non-private-ip-1.4.4" sources."options-0.0.6" sources."os-homedir-1.0.2" @@ -41044,9 +43137,12 @@ in ]; }) sources."pull-ws-3.3.1" + sources."railroad-diagrams-1.0.0" + sources."randexp-0.4.6" sources."rc-1.2.8" sources."relative-url-1.0.2" sources."remove-markdown-0.1.0" + sources."ret-0.1.15" sources."safe-buffer-5.1.2" sources."secret-handshake-1.1.14" sources."semver-5.6.0" @@ -41061,11 +43157,11 @@ in ]; }) sources."sodium-chloride-1.1.2" - sources."sodium-native-2.2.2" + sources."sodium-native-2.2.3" sources."split-buffer-1.0.0" sources."ssb-avatar-0.2.0" sources."ssb-client-4.6.0" - sources."ssb-config-2.3.5" + sources."ssb-config-2.3.7" sources."ssb-git-0.5.0" sources."ssb-git-repo-2.8.3" sources."ssb-issues-1.0.0" @@ -41083,7 +43179,7 @@ in }) sources."ssb-msgs-5.2.0" sources."ssb-pull-requests-1.0.0" - sources."ssb-ref-2.12.0" + sources."ssb-ref-2.13.6" (sources."stream-to-pull-stream-1.7.2" // { dependencies = [ sources."looper-3.0.0" @@ -41094,6 +43190,7 @@ in sources."tweetnacl-0.14.5" sources."tweetnacl-auth-0.3.1" sources."ultron-1.0.2" + sources."underscore-1.4.4" sources."ws-1.1.5" sources."xtend-4.0.1" ]; @@ -41126,10 +43223,10 @@ in graphql-cli = nodeEnv.buildNodePackage { name = "graphql-cli"; packageName = "graphql-cli"; - version = "2.16.7"; + version = "2.17.0"; src = fetchurl { - url = "https://registry.npmjs.org/graphql-cli/-/graphql-cli-2.16.7.tgz"; - sha512 = "I1kkJ9mqgctjOHDTo3bg7CLpZDeuLrOhKeNmohWhka2bWb0jf5T9IspHLDDTIEsOB56KEnvW2fUwRsTFHJK2HQ=="; + url = "https://registry.npmjs.org/graphql-cli/-/graphql-cli-2.17.0.tgz"; + sha512 = "K82gG79pA3G8GzMeqFq5+kkdZi7K6UWlvmrWLuGaIvo8F1wdHAKDvfexjRGb5CPisqAJqQqbsGsfrg7If488kA=="; }; dependencies = [ sources."@babel/generator-7.0.0-beta.38" @@ -41174,7 +43271,7 @@ in sources."babel-runtime-6.26.0" sources."balanced-match-1.0.0" sources."bcrypt-pbkdf-1.0.2" - sources."bluebird-3.5.2" + sources."bluebird-3.5.3" (sources."body-parser-1.18.3" // { dependencies = [ sources."iconv-lite-0.4.23" @@ -41224,11 +43321,7 @@ in sources."cookie-signature-1.0.6" sources."core-js-2.5.7" sources."core-util-is-1.0.2" - (sources."cosmiconfig-3.1.0" // { - dependencies = [ - sources."parse-json-3.0.0" - ]; - }) + sources."cosmiconfig-3.1.0" sources."create-error-class-3.0.2" (sources."cross-fetch-2.2.2" // { dependencies = [ @@ -41299,11 +43392,7 @@ in sources."find-0.2.9" sources."find-up-2.1.0" sources."forever-agent-0.6.1" - (sources."form-data-2.3.2" // { - dependencies = [ - sources."combined-stream-1.0.6" - ]; - }) + sources."form-data-2.3.3" sources."format-util-1.0.3" sources."forwarded-0.1.2" sources."fresh-0.5.2" @@ -41317,7 +43406,7 @@ in sources."global-modules-1.0.0" sources."global-prefix-1.0.2" sources."got-6.7.1" - sources."graceful-fs-4.1.11" + sources."graceful-fs-4.1.15" sources."graphcool-json-schema-1.2.1" (sources."graphcool-yml-0.4.15" // { dependencies = [ @@ -41338,17 +43427,16 @@ in sources."lodash-4.17.5" ]; }) - sources."graphql-config-2.0.1" - sources."graphql-config-extension-graphcool-1.0.8" - sources."graphql-config-extension-openapi-1.0.6" - sources."graphql-config-extension-prisma-0.2.1" - sources."graphql-import-0.4.5" - (sources."graphql-playground-html-1.5.5" // { + (sources."graphql-config-2.2.1" // { dependencies = [ - sources."graphql-config-2.0.0" + sources."graphql-import-0.7.1" ]; }) - sources."graphql-playground-middleware-express-1.6.2" + sources."graphql-config-extension-graphcool-1.0.11" + sources."graphql-config-extension-prisma-0.2.5" + sources."graphql-import-0.4.5" + sources."graphql-playground-html-1.6.4" + sources."graphql-playground-middleware-express-1.7.6" sources."graphql-request-1.8.2" sources."graphql-schema-linter-0.1.1" sources."graphql-static-binding-0.9.3" @@ -41413,7 +43501,7 @@ in sources."js-base64-2.4.9" sources."js-yaml-3.12.0" sources."jsbn-0.1.1" - sources."jsesc-2.5.1" + sources."jsesc-2.5.2" sources."json-schema-0.2.3" (sources."json-schema-ref-parser-3.3.1" // { dependencies = [ @@ -41436,7 +43524,11 @@ in sources."jws-3.1.5" sources."latest-version-3.1.0" sources."lcid-1.0.0" - sources."load-json-file-2.0.0" + (sources."load-json-file-2.0.0" // { + dependencies = [ + sources."parse-json-2.2.0" + ]; + }) sources."locate-path-2.0.0" sources."lodash-4.17.11" sources."lodash.get-4.4.2" @@ -41463,8 +43555,8 @@ in sources."merge-descriptors-1.0.1" sources."methods-1.1.2" sources."mime-1.4.1" - sources."mime-db-1.36.0" - sources."mime-types-2.1.20" + sources."mime-db-1.37.0" + sources."mime-types-2.1.21" sources."mimic-fn-1.2.0" sources."minimatch-3.0.4" sources."minimist-0.0.8" @@ -41474,8 +43566,8 @@ in sources."negotiator-0.6.1" sources."nice-try-1.0.5" sources."no-case-2.3.2" - sources."node-fetch-2.2.0" - sources."node-request-by-swagger-1.1.3" + sources."node-fetch-2.2.1" + sources."node-request-by-swagger-1.1.4" sources."normalize-package-data-2.4.0" sources."npm-path-2.0.4" sources."npm-paths-1.0.0" @@ -41505,7 +43597,7 @@ in sources."package-json-4.0.1" sources."param-case-2.1.1" sources."parse-github-url-1.0.2" - sources."parse-json-2.2.0" + sources."parse-json-3.0.0" sources."parse-passwd-1.0.0" sources."parseurl-1.3.2" sources."pascal-case-2.0.1" @@ -41519,11 +43611,12 @@ in sources."performance-now-2.1.0" sources."pify-2.3.0" sources."prepend-http-1.0.4" - sources."prisma-json-schema-0.1.1" - (sources."prisma-yml-1.0.93" // { + sources."prisma-json-schema-0.1.3" + (sources."prisma-yml-1.20.0-beta.18" // { dependencies = [ sources."debug-3.2.6" sources."dotenv-4.0.0" + sources."fs-extra-7.0.1" sources."ms-2.1.1" ]; }) @@ -41564,6 +43657,7 @@ in sources."require-from-string-2.0.2" sources."require-main-filename-1.0.1" sources."resolve-dir-1.0.1" + sources."resolve-from-4.0.0" sources."restore-cursor-2.0.0" sources."rimraf-2.6.2" sources."run-async-2.3.0" @@ -41593,9 +43687,9 @@ in sources."spdx-correct-3.0.2" sources."spdx-exceptions-2.2.0" sources."spdx-expression-parse-3.0.0" - sources."spdx-license-ids-3.0.1" + sources."spdx-license-ids-3.0.2" sources."sprintf-js-1.0.3" - sources."sshpk-1.15.1" + sources."sshpk-1.15.2" sources."statuses-1.4.0" sources."stealthy-require-1.1.1" (sources."string-width-2.1.1" // { @@ -41614,10 +43708,11 @@ in sources."sync-exec-0.6.2" sources."term-size-1.2.0" sources."through-2.3.8" - sources."through2-2.0.3" + sources."through2-2.0.5" sources."timed-out-4.0.1" sources."title-case-2.1.1" sources."tmp-0.0.33" + sources."tmp-graphql-config-extension-openapi-1.0.7" sources."to-fast-properties-2.0.0" sources."tough-cookie-2.4.3" sources."traverse-chain-0.1.0" @@ -41639,14 +43734,14 @@ in sources."utils-merge-1.0.1" sources."uuid-3.3.2" sources."validate-npm-package-license-3.0.4" - sources."validator-10.8.0" + sources."validator-10.9.0" sources."vary-1.1.2" sources."verror-1.10.0" sources."wcwidth-1.0.1" sources."whatwg-fetch-2.0.4" sources."which-1.3.1" sources."which-module-2.0.0" - sources."widest-line-2.0.0" + sources."widest-line-2.0.1" (sources."wrap-ansi-2.1.0" // { dependencies = [ sources."ansi-regex-2.1.1" @@ -41681,10 +43776,10 @@ in grunt-cli = nodeEnv.buildNodePackage { name = "grunt-cli"; packageName = "grunt-cli"; - version = "1.3.1"; + version = "1.3.2"; src = fetchurl { - url = "https://registry.npmjs.org/grunt-cli/-/grunt-cli-1.3.1.tgz"; - sha512 = "UwBRu/QpAjDc53DRLEkyilFdL0zenpxu+fddTIlsF/KJqdNcHaQmvyu1W3cDesZ9rqqZdKK5A8+QDIyLUEWoZQ=="; + url = "https://registry.npmjs.org/grunt-cli/-/grunt-cli-1.3.2.tgz"; + sha512 = "8OHDiZZkcptxVXtMfDxJvmN7MVJNE8L/yIcPb4HB7TlyFD1kDvjHrb62uhySsU14wJx9ORMnTuhRMQ40lH/orQ=="; }; dependencies = [ sources."abbrev-1.1.1" @@ -41936,7 +44031,7 @@ in }) sources."urix-0.1.0" sources."use-3.1.1" - sources."v8flags-3.0.2" + sources."v8flags-3.1.1" sources."which-1.3.1" ]; buildInputs = globalBuildInputs; @@ -42366,7 +44461,7 @@ in sources."strip-ansi-3.0.1" sources."strip-bom-1.0.0" sources."supports-color-2.0.0" - (sources."through2-2.0.3" // { + (sources."through2-2.0.5" // { dependencies = [ sources."isarray-1.0.0" sources."readable-stream-2.3.6" @@ -42536,7 +44631,7 @@ in sources."global-modules-1.0.0" sources."global-prefix-1.0.2" sources."glogg-1.0.1" - sources."graceful-fs-4.1.11" + sources."graceful-fs-4.1.15" sources."gulplog-1.0.0" sources."has-value-1.0.0" (sources."has-values-1.0.0" // { @@ -42703,7 +44798,7 @@ in sources."spdx-correct-3.0.2" sources."spdx-exceptions-2.2.0" sources."spdx-expression-parse-3.0.0" - sources."spdx-license-ids-3.0.1" + sources."spdx-license-ids-3.0.2" sources."split-string-3.1.0" sources."stack-trace-0.0.10" (sources."static-extend-0.1.2" // { @@ -42868,7 +44963,7 @@ in (sources."dom-serializer-0.1.0" // { dependencies = [ sources."domelementtype-1.1.3" - sources."entities-1.1.1" + sources."entities-1.1.2" ]; }) sources."domelementtype-1.3.0" @@ -42905,11 +45000,7 @@ in sources."for-in-1.0.2" sources."for-own-1.0.0" sources."forever-agent-0.6.1" - (sources."form-data-2.3.2" // { - dependencies = [ - sources."combined-stream-1.0.6" - ]; - }) + sources."form-data-2.3.3" sources."fs-extra-1.0.0" sources."fs.realpath-1.0.0" (sources."ftp-0.3.10" // { @@ -42927,7 +45018,7 @@ in sources."glob-7.1.3" sources."glob-base-0.3.0" sources."glob-parent-2.0.0" - sources."graceful-fs-4.1.11" + sources."graceful-fs-4.1.15" sources."graphlib-2.1.5" sources."har-schema-2.0.0" sources."har-validator-5.1.0" @@ -43020,8 +45111,8 @@ in sources."lru-cache-4.1.3" sources."macos-release-1.1.0" sources."make-dir-1.3.0" - sources."mime-db-1.36.0" - sources."mime-types-2.1.20" + sources."mime-db-1.37.0" + sources."mime-types-2.1.21" sources."mimic-fn-1.2.0" sources."minimatch-3.0.4" sources."minimist-0.0.8" @@ -43112,22 +45203,22 @@ in sources."shelljs-0.3.0" sources."signal-exit-3.0.2" sources."smart-buffer-1.1.15" - sources."snyk-1.103.4" + sources."snyk-1.108.2" sources."snyk-config-2.2.0" - sources."snyk-docker-plugin-1.12.0" - sources."snyk-go-plugin-1.5.2" - sources."snyk-gradle-plugin-2.1.0" - sources."snyk-module-1.8.2" + sources."snyk-docker-plugin-1.12.2" + sources."snyk-go-plugin-1.6.0" + sources."snyk-gradle-plugin-2.1.1" + sources."snyk-module-1.9.1" sources."snyk-mvn-plugin-2.0.0" - (sources."snyk-nodejs-lockfile-parser-1.5.3" // { + (sources."snyk-nodejs-lockfile-parser-1.7.0" // { dependencies = [ sources."lodash-4.17.10" ]; }) sources."snyk-nuget-plugin-1.6.5" sources."snyk-php-plugin-1.5.1" - sources."snyk-policy-1.12.0" - sources."snyk-python-plugin-1.8.2" + sources."snyk-policy-1.13.1" + sources."snyk-python-plugin-1.9.0" sources."snyk-resolve-1.0.1" sources."snyk-resolve-deps-4.0.2" sources."snyk-sbt-plugin-2.0.0" @@ -43139,7 +45230,7 @@ in sources."source-map-support-0.5.9" sources."split-1.0.1" sources."sprintf-js-1.0.3" - sources."sshpk-1.15.1" + sources."sshpk-1.15.2" sources."stack-trace-0.0.10" sources."statuses-1.5.0" sources."string-width-2.1.1" @@ -43223,16 +45314,16 @@ in html-minifier = nodeEnv.buildNodePackage { name = "html-minifier"; packageName = "html-minifier"; - version = "3.5.20"; + version = "3.5.21"; src = fetchurl { - url = "https://registry.npmjs.org/html-minifier/-/html-minifier-3.5.20.tgz"; - sha512 = "ZmgNLaTp54+HFKkONyLFEfs5dd/ZOtlquKaTnqIWFmx3Av5zG6ZPcV2d0o9XM2fXOTxxIf6eDcwzFFotke/5zA=="; + url = "https://registry.npmjs.org/html-minifier/-/html-minifier-3.5.21.tgz"; + sha512 = "LKUKwuJDhxNa3uf/LPR/KVjm/l3rBqtYeCOAekvG8F1vItxMUpueGd94i/asDDr8/1u7InxzFA5EeGjhhG5mMA=="; }; dependencies = [ sources."camel-case-3.0.0" sources."clean-css-4.2.1" sources."commander-2.17.1" - sources."he-1.1.1" + sources."he-1.2.0" sources."lower-case-1.1.4" sources."no-case-2.3.2" sources."param-case-2.1.1" @@ -43282,7 +45373,7 @@ in sources."minimist-0.0.10" ]; }) - (sources."portfinder-1.0.17" // { + (sources."portfinder-1.0.19" // { dependencies = [ sources."debug-2.6.9" ]; @@ -43305,22 +45396,23 @@ in ionic = nodeEnv.buildNodePackage { name = "ionic"; packageName = "ionic"; - version = "4.2.1"; + version = "4.3.1"; src = fetchurl { - url = "https://registry.npmjs.org/ionic/-/ionic-4.2.1.tgz"; - sha512 = "4QwbtBxHYTaa/wxlYx+iXdSALs8aoEAw8poR24tTUtJRd0aKoAJM4K815DuNKLUFdgn3v0pTixdTTPLH8CADxw=="; + url = "https://registry.npmjs.org/ionic/-/ionic-4.3.1.tgz"; + sha512 = "zPMaUqiQTrDtZRjwaes0EUbqge+3CaUZRPPbusp7xCRCaT9H81ybhgVKNDzhWUvtWYPurarm4kIRPptoTv3LFA=="; }; dependencies = [ - sources."@ionic/cli-framework-1.1.1" - sources."@ionic/discover-1.0.6" - sources."@ionic/utils-fs-0.0.3" - sources."@ionic/utils-network-0.0.3" + sources."@ionic/cli-framework-1.3.0" + sources."@ionic/discover-1.0.7" + sources."@ionic/utils-fs-0.0.4" + sources."@ionic/utils-network-0.0.4" sources."agent-base-4.2.1" sources."ansi-align-2.0.0" sources."ansi-escapes-3.1.0" sources."ansi-regex-3.0.0" sources."ansi-styles-3.2.1" sources."ast-types-0.11.6" + sources."astral-regex-1.0.0" sources."async-limiter-1.0.0" sources."asynckit-0.4.0" sources."balanced-match-1.0.0" @@ -43339,7 +45431,7 @@ in sources."co-4.6.0" sources."color-convert-1.9.3" sources."color-name-1.1.3" - sources."combined-stream-1.0.6" + sources."combined-stream-1.0.7" sources."component-emitter-1.2.1" sources."concat-map-0.0.1" sources."configstore-3.1.2" @@ -43373,7 +45465,7 @@ in sources."fast-levenshtein-2.0.6" sources."figures-2.0.0" sources."file-uri-to-path-1.0.0" - sources."form-data-2.3.2" + sources."form-data-2.3.3" sources."formidable-1.2.1" sources."fs-minipass-1.2.5" sources."fs.realpath-1.0.0" @@ -43394,7 +45486,7 @@ in sources."glob-7.1.3" sources."global-dirs-0.1.1" sources."got-6.7.1" - sources."graceful-fs-4.1.11" + sources."graceful-fs-4.1.15" sources."has-flag-3.0.0" sources."http-errors-1.6.3" (sources."http-proxy-agent-2.1.0" // { @@ -43453,18 +45545,24 @@ in sources."lodash.isarray-3.0.4" sources."lodash.keys-3.1.2" sources."lodash.restparam-3.6.1" + (sources."log-update-2.3.0" // { + dependencies = [ + sources."strip-ansi-4.0.0" + sources."wrap-ansi-3.0.1" + ]; + }) sources."lowercase-keys-1.0.1" sources."lru-cache-4.1.3" sources."macos-release-1.1.0" sources."make-dir-1.3.0" sources."methods-1.1.2" sources."mime-1.6.0" - sources."mime-db-1.36.0" - sources."mime-types-2.1.20" + sources."mime-db-1.37.0" + sources."mime-types-2.1.21" sources."mimic-fn-1.2.0" sources."minimatch-3.0.4" sources."minimist-1.2.0" - (sources."minipass-2.3.4" // { + (sources."minipass-2.3.5" // { dependencies = [ sources."yallist-3.0.2" ]; @@ -43532,9 +45630,9 @@ in sources."shebang-command-1.2.0" sources."shebang-regex-1.0.0" sources."signal-exit-3.0.2" - sources."slice-ansi-1.0.0" + sources."slice-ansi-2.0.0" sources."smart-buffer-4.0.1" - sources."socks-2.2.1" + sources."socks-2.2.2" sources."socks-proxy-agent-4.0.1" sources."source-map-0.6.1" sources."split2-2.2.0" @@ -43565,14 +45663,14 @@ in ]; }) sources."supports-color-5.5.0" - (sources."tar-4.4.6" // { + (sources."tar-4.4.8" // { dependencies = [ sources."yallist-3.0.2" ]; }) sources."term-size-1.2.0" sources."through-2.3.8" - sources."through2-2.0.3" + sources."through2-2.0.5" sources."thunkify-2.1.2" sources."timed-out-4.0.1" sources."tmp-0.0.33" @@ -43588,7 +45686,7 @@ in sources."util-deprecate-1.0.2" sources."uuid-3.3.2" sources."which-1.3.1" - sources."widest-line-2.0.0" + sources."widest-line-2.0.1" sources."win-release-1.1.1" sources."wordwrap-1.0.0" (sources."wrap-ansi-4.0.0" // { @@ -43616,10 +45714,10 @@ in ios-deploy = nodeEnv.buildNodePackage { name = "ios-deploy"; packageName = "ios-deploy"; - version = "1.9.3"; + version = "1.9.4"; src = fetchurl { - url = "https://registry.npmjs.org/ios-deploy/-/ios-deploy-1.9.3.tgz"; - sha512 = "i/8DxXzcL2feqqL6DjUfjqUHyWVmHYNkzZFTyf6yoC4glrI3jQ+8Hhg63vzw/5OoFXN7OyXqjkshAj9c1EsVSw=="; + url = "https://registry.npmjs.org/ios-deploy/-/ios-deploy-1.9.4.tgz"; + sha512 = "pgyc19zgtwGrfx3GL8yV0c0dAPucTpJ0VZkuS3DcqxIZYC48+UW+tBTxI43u1ZDk17mop0ABLs1SkAy5SUQ6pQ=="; }; buildInputs = globalBuildInputs; meta = { @@ -43776,10 +45874,10 @@ in jake = nodeEnv.buildNodePackage { name = "jake"; packageName = "jake"; - version = "8.0.18"; + version = "8.0.19"; src = fetchurl { - url = "https://registry.npmjs.org/jake/-/jake-8.0.18.tgz"; - sha512 = "KSF3QH/uNR7pKcWgBuS7U1nYoYdcqitLEB86nvIcYztiiDsePkn2/JoSutiKP77O1MTNlbhTiNHorIrlpyy4sA=="; + url = "https://registry.npmjs.org/jake/-/jake-8.0.19.tgz"; + sha512 = "iilJduYCUwxRqH3fJ3b4cP5rqeh43pGM8OS62LDwoKCRoeYAj4t/KJAtBJ4jcsVKEOPJ1jNg4o1sKibk3ZnVUw=="; }; dependencies = [ sources."ansi-styles-1.0.0" @@ -43904,7 +46002,7 @@ in }) sources."glob-7.1.3" sources."global-dirs-0.1.1" - sources."graceful-fs-4.1.11" + sources."graceful-fs-4.1.15" sources."has-flag-3.0.0" sources."hosted-git-info-2.7.1" sources."indent-string-3.2.0" @@ -44002,7 +46100,7 @@ in sources."spdx-correct-3.0.2" sources."spdx-exceptions-2.2.0" sources."spdx-expression-parse-3.0.0" - sources."spdx-license-ids-3.0.1" + sources."spdx-license-ids-3.0.2" sources."split2-2.2.0" sources."sprintf-js-1.0.3" sources."string-similarity-1.2.2" @@ -44017,7 +46115,7 @@ in sources."thenify-all-1.6.0" sources."thriftrw-3.11.3" sources."through-2.3.8" - sources."through2-2.0.3" + sources."through2-2.0.5" sources."trim-newlines-2.0.0" sources."trim-off-newlines-1.0.1" sources."type-detect-4.0.8" @@ -44078,10 +46176,10 @@ in }; dependencies = [ sources."babylon-7.0.0-beta.19" - sources."bluebird-3.5.2" + sources."bluebird-3.5.3" sources."catharsis-0.8.9" sources."escape-string-regexp-1.0.5" - sources."graceful-fs-4.1.11" + sources."graceful-fs-4.1.15" sources."js2xmlparser-3.0.0" sources."klaw-2.0.0" sources."marked-0.3.19" @@ -44154,7 +46252,7 @@ in (sources."dom-serializer-0.1.0" // { dependencies = [ sources."domelementtype-1.1.3" - sources."entities-1.1.1" + sources."entities-1.1.2" ]; }) sources."domelementtype-1.3.0" @@ -44172,16 +46270,12 @@ in sources."fast-json-stable-stringify-2.0.0" sources."fd-slicer-1.0.1" sources."forever-agent-0.6.1" - (sources."form-data-2.3.2" // { - dependencies = [ - sources."combined-stream-1.0.6" - ]; - }) + sources."form-data-2.3.3" sources."fs-extra-1.0.0" sources."fs.realpath-1.0.0" sources."getpass-0.1.7" sources."glob-7.1.3" - sources."graceful-fs-4.1.11" + sources."graceful-fs-4.1.15" sources."har-schema-2.0.0" sources."har-validator-5.1.0" sources."hasha-2.2.0" @@ -44203,8 +46297,8 @@ in sources."kew-0.7.0" sources."klaw-1.3.1" sources."lodash-4.17.11" - sources."mime-db-1.36.0" - sources."mime-types-2.1.20" + sources."mime-db-1.37.0" + sources."mime-types-2.1.21" sources."minimatch-3.0.4" sources."minimist-0.0.8" sources."mkdirp-0.5.1" @@ -44230,7 +46324,7 @@ in sources."safer-buffer-2.1.2" sources."shelljs-0.3.0" sources."split-1.0.1" - sources."sshpk-1.15.1" + sources."sshpk-1.15.2" sources."stack-trace-0.0.10" sources."string_decoder-0.10.31" sources."strip-json-comments-1.0.4" @@ -44277,13 +46371,13 @@ in js-beautify = nodeEnv.buildNodePackage { name = "js-beautify"; packageName = "js-beautify"; - version = "1.8.7"; + version = "1.8.8"; src = fetchurl { - url = "https://registry.npmjs.org/js-beautify/-/js-beautify-1.8.7.tgz"; - sha512 = "yhAMCTv0L9GNg6Gql7i+g4C1z9rQhfHXy4J0TGYFoBzzHR4reWYS573gkRrPuE58dYOH451LmBeAb8L1pLEfdA=="; + url = "https://registry.npmjs.org/js-beautify/-/js-beautify-1.8.8.tgz"; + sha512 = "qVNq7ZZ7ZbLdzorvSlRDadS0Rh5oyItaE95v6I4wbbuSiijxn7SnnsV6dvKlcXuO2jX7lK8tn9fBulx34K/Ejg=="; }; dependencies = [ - sources."@types/node-10.11.7" + sources."@types/node-10.12.5" sources."@types/semver-5.5.0" sources."abbrev-1.1.1" sources."commander-2.19.0" @@ -44388,7 +46482,7 @@ in dependencies = [ sources."argparse-1.0.10" sources."asynckit-0.4.0" - sources."combined-stream-1.0.6" + sources."combined-stream-1.0.7" sources."commander-2.11.0" sources."component-emitter-1.2.1" sources."cookiejar-2.1.2" @@ -44397,7 +46491,7 @@ in sources."delayed-stream-1.0.0" sources."esprima-4.0.1" sources."extend-3.0.2" - sources."form-data-2.3.2" + sources."form-data-2.3.3" sources."formidable-1.2.1" sources."graphlib-2.1.5" sources."inherits-2.0.3" @@ -44406,8 +46500,8 @@ in sources."lodash-4.17.11" sources."methods-1.1.2" sources."mime-1.6.0" - sources."mime-db-1.36.0" - sources."mime-types-2.1.20" + sources."mime-db-1.37.0" + sources."mime-types-2.1.21" sources."ms-2.1.1" sources."native-promise-only-0.8.1" sources."path-loader-1.0.9" @@ -44478,7 +46572,7 @@ in sources."cookie-0.3.1" sources."cookie-signature-1.0.6" sources."core-util-is-1.0.2" - sources."cors-2.8.4" + sources."cors-2.8.5" sources."create-error-class-3.0.2" sources."cross-spawn-5.1.0" sources."crypto-random-string-1.0.0" @@ -44520,11 +46614,7 @@ in }) sources."find-up-2.1.0" sources."forever-agent-0.6.1" - (sources."form-data-2.3.2" // { - dependencies = [ - sources."combined-stream-1.0.6" - ]; - }) + sources."form-data-2.3.3" sources."forwarded-0.1.2" sources."fresh-0.5.2" sources."get-caller-file-1.0.3" @@ -44532,7 +46622,7 @@ in sources."getpass-0.1.7" sources."global-dirs-0.1.1" sources."got-6.7.1" - sources."graceful-fs-4.1.11" + sources."graceful-fs-4.1.15" sources."har-schema-2.0.0" sources."har-validator-5.1.0" sources."has-flag-3.0.0" @@ -44581,13 +46671,13 @@ in sources."method-override-2.3.10" sources."methods-1.1.2" sources."mime-1.4.1" - sources."mime-db-1.36.0" - sources."mime-types-2.1.20" + sources."mime-db-1.37.0" + sources."mime-types-2.1.21" sources."mimic-fn-1.2.0" sources."minimist-1.2.0" sources."morgan-1.9.1" sources."ms-2.0.0" - sources."nanoid-1.3.0" + sources."nanoid-1.3.4" sources."negotiator-0.6.1" sources."npm-run-path-2.0.2" sources."number-is-nan-1.0.1" @@ -44641,7 +46731,7 @@ in sources."shebang-command-1.2.0" sources."shebang-regex-1.0.0" sources."signal-exit-3.0.2" - sources."sshpk-1.15.1" + sources."sshpk-1.15.2" sources."statuses-1.5.0" sources."steno-0.4.4" sources."string-width-2.1.1" @@ -44666,7 +46756,7 @@ in sources."verror-1.10.0" sources."which-1.3.1" sources."which-module-2.0.0" - sources."widest-line-2.0.0" + sources."widest-line-2.0.1" (sources."wrap-ansi-2.1.0" // { dependencies = [ sources."ansi-regex-2.1.1" @@ -44716,10 +46806,10 @@ in karma = nodeEnv.buildNodePackage { name = "karma"; packageName = "karma"; - version = "3.0.0"; + version = "3.1.1"; src = fetchurl { - url = "https://registry.npmjs.org/karma/-/karma-3.0.0.tgz"; - sha512 = "ZTjyuDXVXhXsvJ1E4CnZzbCjSxD6sEdzEsFYogLuZM0yqvg/mgz+O+R1jb0J7uAQeuzdY8kJgx6hSNXLwFuHIQ=="; + url = "https://registry.npmjs.org/karma/-/karma-3.1.1.tgz"; + sha512 = "NetT3wPCQMNB36uiL9LLyhrOt8SQwrEKt0xD3+KpTCfm0VxVyUJdPL5oTq2Ic5ouemgL/Iz4wqXEbF3zea9kQQ=="; }; dependencies = [ sources."accepts-1.3.5" @@ -44746,8 +46836,8 @@ in sources."base64id-1.0.0" sources."better-assert-1.0.2" sources."binary-extensions-1.12.0" - sources."blob-0.0.4" - sources."bluebird-3.5.2" + sources."blob-0.0.5" + sources."bluebird-3.5.3" sources."body-parser-1.18.3" sources."brace-expansion-1.1.11" (sources."braces-2.3.2" // { @@ -44763,7 +46853,7 @@ in sources."cache-base-1.0.1" sources."callsite-1.0.0" sources."chokidar-2.0.4" - sources."circular-json-0.5.7" + sources."circular-json-0.5.9" (sources."class-utils-0.3.6" // { dependencies = [ sources."define-property-0.2.5" @@ -44804,7 +46894,7 @@ in sources."dom-serialize-2.2.1" sources."ee-first-1.1.1" sources."encodeurl-1.0.2" - (sources."engine.io-3.2.0" // { + (sources."engine.io-3.2.1" // { dependencies = [ sources."debug-3.1.0" ]; @@ -44814,7 +46904,7 @@ in sources."debug-3.1.0" ]; }) - sources."engine.io-parser-2.1.2" + sources."engine.io-parser-2.1.3" sources."ent-2.2.0" sources."escape-html-1.0.3" sources."eventemitter3-3.1.0" @@ -44885,7 +46975,7 @@ in sources."is-glob-3.1.0" ]; }) - sources."graceful-fs-4.1.11" + sources."graceful-fs-4.1.15" (sources."has-binary2-1.0.3" // { dependencies = [ sources."isarray-2.0.1" @@ -44937,8 +47027,8 @@ in sources."media-typer-0.3.0" sources."micromatch-3.1.10" sources."mime-2.3.1" - sources."mime-db-1.36.0" - sources."mime-types-2.1.20" + sources."mime-db-1.37.0" + sources."mime-types-2.1.21" sources."minimatch-3.0.4" sources."minimist-0.0.8" sources."mixin-deep-1.3.1" @@ -45198,8 +47288,8 @@ in }) sources."methods-1.1.2" sources."mime-1.3.4" - sources."mime-db-1.36.0" - sources."mime-types-2.1.20" + sources."mime-db-1.37.0" + sources."mime-types-2.1.21" sources."minimist-0.0.8" sources."mkdirp-0.5.1" sources."morgan-1.6.1" @@ -45317,7 +47407,7 @@ in sources."glob-7.1.3" sources."glob-parent-3.1.0" sources."glob-stream-6.1.0" - sources."graceful-fs-4.1.11" + sources."graceful-fs-4.1.15" sources."has-symbols-1.0.0" sources."inflight-1.0.6" sources."inherits-2.0.3" @@ -45357,7 +47447,7 @@ in sources."safe-buffer-5.1.2" sources."stream-shift-1.0.0" sources."string_decoder-1.1.1" - sources."through2-2.0.3" + sources."through2-2.0.5" sources."through2-filter-2.0.0" sources."to-absolute-glob-2.0.2" sources."to-through-2.0.0" @@ -45383,10 +47473,10 @@ in leetcode-cli = nodeEnv.buildNodePackage { name = "leetcode-cli"; packageName = "leetcode-cli"; - version = "2.5.2"; + version = "2.5.3"; src = fetchurl { - url = "https://registry.npmjs.org/leetcode-cli/-/leetcode-cli-2.5.2.tgz"; - sha512 = "KneaqL2/SAfJQpxR1yheLrnB10f8vwJJbVBA4vxtRl6aENbO+JKsJSgE1cZvO/4isD+MPI7C5HPjJbL5+MOmnw=="; + url = "https://registry.npmjs.org/leetcode-cli/-/leetcode-cli-2.5.3.tgz"; + sha512 = "FlV2bYtdELx6NPSyd+ZfiQ9LKpjNr/UZ3orAhwx2Llg361QvS03XIxFFAi/RuvMKDi01zvHfRzsONPJt4hRXlQ=="; }; dependencies = [ sources."abab-1.0.4" @@ -45427,13 +47517,13 @@ in sources."concat-map-0.0.1" sources."core-util-is-1.0.2" sources."cross-spawn-5.1.0" - (sources."cryptiles-3.1.2" // { + (sources."cryptiles-3.1.4" // { dependencies = [ sources."boom-5.2.0" ]; }) sources."css-select-1.2.0" - sources."css-what-2.1.0" + sources."css-what-2.1.2" sources."cssom-0.3.4" sources."cssstyle-0.2.37" sources."cycle-1.0.3" @@ -45451,7 +47541,7 @@ in sources."domhandler-2.3.0" sources."domutils-1.5.1" sources."ecc-jsbn-0.1.2" - sources."entities-1.1.1" + sources."entities-1.1.2" sources."escape-string-regexp-1.0.5" sources."escodegen-1.11.0" sources."esprima-3.1.3" @@ -45466,11 +47556,7 @@ in sources."fast-levenshtein-2.0.6" sources."find-up-2.1.0" sources."forever-agent-0.6.1" - (sources."form-data-2.3.2" // { - dependencies = [ - sources."combined-stream-1.0.6" - ]; - }) + sources."form-data-2.3.3" sources."fs.realpath-1.0.0" sources."get-caller-file-1.0.3" sources."get-stream-3.0.0" @@ -45512,8 +47598,8 @@ in sources."log-symbols-2.2.0" sources."lru-cache-4.1.3" sources."mem-1.1.0" - sources."mime-db-1.36.0" - sources."mime-types-2.1.20" + sources."mime-db-1.37.0" + sources."mime-types-2.1.21" sources."mimic-fn-1.2.0" sources."minimatch-3.0.4" sources."minimist-0.0.8" @@ -45527,7 +47613,7 @@ in }) sources."ncp-1.0.1" sources."npm-run-path-2.0.2" - sources."nth-check-1.0.1" + sources."nth-check-1.0.2" sources."number-is-nan-1.0.1" sources."nwmatcher-1.4.4" sources."oauth-sign-0.8.2" @@ -45575,7 +47661,7 @@ in sources."sntp-2.1.0" sources."source-map-0.6.1" sources."sprintf-js-1.1.1" - sources."sshpk-1.15.1" + sources."sshpk-1.15.2" sources."stack-trace-0.0.10" sources."string-width-1.0.2" sources."string_decoder-0.10.31" @@ -45663,7 +47749,11 @@ in sources."@lerna/collect-updates-3.3.2" sources."@lerna/command-3.3.0" sources."@lerna/conventional-commits-3.4.1" - sources."@lerna/create-3.4.1" + (sources."@lerna/create-3.4.1" // { + dependencies = [ + sources."camelcase-4.1.0" + ]; + }) sources."@lerna/create-symlink-3.3.0" sources."@lerna/describe-ref-3.3.0" sources."@lerna/diff-3.3.0" @@ -45701,11 +47791,11 @@ in sources."@lerna/version-3.4.1" sources."@lerna/write-log-file-3.0.0" sources."@mrmlnc/readdir-enhanced-2.2.1" - sources."@nodelib/fs.stat-1.1.2" + sources."@nodelib/fs.stat-1.1.3" sources."JSONStream-1.3.5" sources."abbrev-1.1.1" sources."agent-base-4.2.1" - sources."agentkeepalive-3.5.1" + sources."agentkeepalive-3.5.2" sources."ajv-5.5.2" sources."ansi-escapes-3.1.0" sources."ansi-regex-2.1.1" @@ -45740,7 +47830,7 @@ in }) sources."bcrypt-pbkdf-1.0.2" sources."block-stream-0.0.9" - sources."bluebird-3.5.2" + sources."bluebird-3.5.3" sources."brace-expansion-1.1.11" (sources."braces-2.3.2" // { dependencies = [ @@ -45751,12 +47841,19 @@ in sources."builtin-modules-1.1.1" sources."builtins-1.0.3" sources."byline-5.0.0" - sources."byte-size-4.0.3" - sources."cacache-11.2.0" + sources."byte-size-4.0.4" + sources."cacache-11.3.1" sources."cache-base-1.0.1" sources."call-me-maybe-1.0.1" - sources."camelcase-4.1.0" - sources."camelcase-keys-4.2.0" + sources."caller-callsite-2.0.0" + sources."caller-path-2.0.0" + sources."callsites-2.0.0" + sources."camelcase-5.0.0" + (sources."camelcase-keys-4.2.0" // { + dependencies = [ + sources."camelcase-4.1.0" + ]; + }) sources."caseless-0.12.0" sources."chalk-2.4.1" sources."chardet-0.7.0" @@ -45807,26 +47904,17 @@ in sources."concat-stream-1.6.2" sources."config-chain-1.1.12" sources."console-control-strings-1.1.0" - sources."conventional-changelog-angular-5.0.1" - (sources."conventional-changelog-core-3.1.0" // { - dependencies = [ - sources."load-json-file-1.1.0" - sources."parse-json-2.2.0" - sources."path-type-1.1.0" - sources."pify-2.3.0" - sources."read-pkg-1.1.0" - sources."strip-bom-2.0.0" - ]; - }) - sources."conventional-changelog-preset-loader-2.0.1" - sources."conventional-changelog-writer-4.0.0" - sources."conventional-commits-filter-2.0.0" - sources."conventional-commits-parser-3.0.0" - sources."conventional-recommended-bump-4.0.1" + sources."conventional-changelog-angular-5.0.2" + sources."conventional-changelog-core-3.1.5" + sources."conventional-changelog-preset-loader-2.0.2" + sources."conventional-changelog-writer-4.0.2" + sources."conventional-commits-filter-2.0.1" + sources."conventional-commits-parser-3.0.1" + sources."conventional-recommended-bump-4.0.4" sources."copy-concurrently-1.0.5" sources."copy-descriptor-0.1.1" sources."core-util-is-1.0.2" - sources."cosmiconfig-5.0.6" + sources."cosmiconfig-5.0.7" sources."cross-spawn-6.0.5" sources."currently-unhandled-0.4.1" sources."cyclist-0.2.2" @@ -45835,10 +47923,9 @@ in sources."dateformat-3.0.3" sources."debug-2.6.9" sources."debuglog-1.0.1" - sources."decamelize-2.0.0" + sources."decamelize-1.2.0" (sources."decamelize-keys-1.1.0" // { dependencies = [ - sources."decamelize-1.2.0" sources."map-obj-1.0.1" ]; }) @@ -45914,14 +48001,10 @@ in sources."flush-write-stream-1.0.3" sources."for-in-1.0.2" sources."forever-agent-0.6.1" - (sources."form-data-2.3.2" // { - dependencies = [ - sources."combined-stream-1.0.6" - ]; - }) + sources."form-data-2.3.3" sources."fragment-cache-0.2.1" sources."from2-2.3.0" - sources."fs-extra-7.0.0" + sources."fs-extra-7.0.1" sources."fs-minipass-1.2.5" sources."fs-write-stream-atomic-1.0.10" sources."fs.realpath-1.0.0" @@ -45932,17 +48015,25 @@ in sources."string-width-1.0.2" ]; }) - sources."genfun-4.0.1" + sources."genfun-5.0.0" sources."get-caller-file-1.0.3" (sources."get-pkg-repo-1.4.0" // { dependencies = [ sources."camelcase-2.1.1" sources."camelcase-keys-2.1.0" - sources."decamelize-1.2.0" + sources."find-up-1.1.2" sources."indent-string-2.1.0" + sources."load-json-file-1.1.0" sources."map-obj-1.0.1" sources."meow-3.7.0" + sources."parse-json-2.2.0" + sources."path-exists-2.1.0" + sources."path-type-1.1.0" + sources."pify-2.3.0" + sources."read-pkg-1.1.0" + sources."read-pkg-up-1.0.1" sources."redent-1.0.0" + sources."strip-bom-2.0.0" sources."strip-indent-1.0.1" sources."trim-newlines-1.0.0" ]; @@ -45958,13 +48049,13 @@ in sources."pify-2.3.0" ]; }) - sources."git-semver-tags-2.0.0" + sources."git-semver-tags-2.0.2" sources."gitconfiglocal-1.0.0" sources."glob-7.1.3" sources."glob-parent-3.1.0" sources."glob-to-regexp-0.3.0" sources."globby-8.0.1" - sources."graceful-fs-4.1.11" + sources."graceful-fs-4.1.15" (sources."handlebars-4.0.12" // { dependencies = [ sources."source-map-0.6.1" @@ -45999,6 +48090,11 @@ in sources."iferr-0.1.5" sources."ignore-3.3.10" sources."ignore-walk-3.0.1" + (sources."import-fresh-2.0.0" // { + dependencies = [ + sources."resolve-from-3.0.0" + ]; + }) sources."import-local-1.0.0" sources."imurmurhash-0.1.4" sources."indent-string-3.2.0" @@ -46078,25 +48174,16 @@ in sources."map-obj-2.0.0" sources."map-visit-1.0.0" sources."mem-4.0.0" - (sources."meow-4.0.1" // { - dependencies = [ - sources."find-up-2.1.0" - sources."locate-path-2.0.0" - sources."p-limit-1.3.0" - sources."p-locate-2.0.0" - sources."p-try-1.0.0" - sources."read-pkg-up-3.0.0" - ]; - }) + sources."meow-4.0.1" sources."merge2-1.2.3" sources."micromatch-3.1.10" - sources."mime-db-1.36.0" - sources."mime-types-2.1.20" + sources."mime-db-1.37.0" + sources."mime-types-2.1.21" sources."mimic-fn-1.2.0" sources."minimatch-3.0.4" sources."minimist-1.2.0" sources."minimist-options-3.0.2" - (sources."minipass-2.3.4" // { + (sources."minipass-2.3.5" // { dependencies = [ sources."yallist-3.0.2" ]; @@ -46133,7 +48220,7 @@ in sources."npm-lifecycle-2.1.0" sources."npm-package-arg-6.1.0" sources."npm-packlist-1.1.12" - sources."npm-pick-manifest-2.1.0" + sources."npm-pick-manifest-2.2.3" sources."npm-registry-fetch-3.8.0" sources."npm-run-path-2.0.2" sources."npmlog-4.1.2" @@ -46182,11 +48269,7 @@ in sources."p-reduce-1.0.0" sources."p-try-2.0.0" sources."p-waterfall-1.0.0" - (sources."pacote-9.1.0" // { - dependencies = [ - sources."get-stream-3.0.0" - ]; - }) + sources."pacote-9.2.3" sources."parallel-transform-1.1.0" sources."parse-github-repo-url-1.4.1" sources."parse-json-4.0.0" @@ -46215,7 +48298,7 @@ in sources."promise-retry-1.1.1" sources."promzard-0.3.0" sources."proto-list-1.2.4" - sources."protoduck-5.0.0" + sources."protoduck-5.0.1" sources."pseudomap-1.0.2" sources."psl-1.1.29" sources."pump-3.0.0" @@ -46233,16 +48316,13 @@ in sources."read-package-json-2.0.13" sources."read-package-tree-5.2.1" sources."read-pkg-3.0.0" - (sources."read-pkg-up-1.0.1" // { + (sources."read-pkg-up-3.0.0" // { dependencies = [ - sources."find-up-1.1.2" - sources."load-json-file-1.1.0" - sources."parse-json-2.2.0" - sources."path-exists-2.1.0" - sources."path-type-1.1.0" - sources."pify-2.3.0" - sources."read-pkg-1.1.0" - sources."strip-bom-2.0.0" + sources."find-up-2.1.0" + sources."locate-path-2.0.0" + sources."p-limit-1.3.0" + sources."p-locate-2.0.0" + sources."p-try-1.0.0" ]; }) sources."readable-stream-2.3.6" @@ -46313,7 +48393,7 @@ in sources."kind-of-3.2.2" ]; }) - sources."socks-2.2.1" + sources."socks-2.2.2" sources."socks-proxy-agent-4.0.1" sources."sort-keys-2.0.0" sources."source-map-0.5.7" @@ -46322,12 +48402,12 @@ in sources."spdx-correct-3.0.2" sources."spdx-exceptions-2.2.0" sources."spdx-expression-parse-3.0.0" - sources."spdx-license-ids-3.0.1" + sources."spdx-license-ids-3.0.2" sources."split-1.0.1" sources."split-string-3.1.0" sources."split2-2.2.0" sources."sprintf-js-1.0.3" - sources."sshpk-1.15.1" + sources."sshpk-1.15.2" sources."ssri-6.0.1" (sources."static-extend-0.1.2" // { dependencies = [ @@ -46361,7 +48441,7 @@ in sources."strip-indent-2.0.0" sources."strong-log-transformer-2.0.0" sources."supports-color-5.5.0" - (sources."tar-4.4.6" // { + (sources."tar-4.4.8" // { dependencies = [ sources."yallist-3.0.2" ]; @@ -46370,7 +48450,7 @@ in sources."temp-write-3.4.0" sources."text-extensions-1.9.0" sources."through-2.3.8" - sources."through2-2.0.3" + sources."through2-2.0.5" sources."tmp-0.0.33" (sources."to-object-path-0.3.0" // { dependencies = [ @@ -46441,12 +48521,11 @@ in sources."write-file-atomic-2.3.0" sources."write-json-file-2.3.0" sources."write-pkg-3.2.0" - sources."xregexp-4.0.0" sources."xtend-4.0.1" sources."y18n-4.0.0" sources."yallist-2.1.2" - sources."yargs-12.0.2" - sources."yargs-parser-10.1.0" + sources."yargs-12.0.4" + sources."yargs-parser-11.1.0" ]; buildInputs = globalBuildInputs; meta = { @@ -46488,13 +48567,9 @@ in sources."fast-deep-equal-1.1.0" sources."fast-json-stable-stringify-2.0.0" sources."forever-agent-0.6.1" - (sources."form-data-2.3.2" // { - dependencies = [ - sources."combined-stream-1.0.6" - ]; - }) + sources."form-data-2.3.3" sources."getpass-0.1.7" - sources."graceful-fs-4.1.11" + sources."graceful-fs-4.1.15" sources."har-schema-2.0.0" sources."har-validator-5.1.0" sources."http-signature-1.2.0" @@ -46507,8 +48582,8 @@ in sources."json-stringify-safe-5.0.1" sources."jsprim-1.4.1" sources."mime-1.6.0" - sources."mime-db-1.36.0" - sources."mime-types-2.1.20" + sources."mime-db-1.37.0" + sources."mime-types-2.1.21" sources."minimist-0.0.8" sources."mkdirp-0.5.1" sources."oauth-sign-0.9.0" @@ -46522,7 +48597,7 @@ in sources."safe-buffer-5.1.2" sources."safer-buffer-2.1.2" sources."source-map-0.6.1" - sources."sshpk-1.15.1" + sources."sshpk-1.15.2" sources."tough-cookie-2.4.3" sources."tunnel-agent-0.6.0" sources."tweetnacl-0.14.5" @@ -46627,7 +48702,7 @@ in }) sources."copy-descriptor-0.1.1" sources."core-util-is-1.0.2" - sources."cors-2.8.4" + sources."cors-2.8.5" sources."debug-2.6.9" sources."decode-uri-component-0.2.0" (sources."define-property-2.0.2" // { @@ -46669,7 +48744,7 @@ in sources."get-value-2.0.6" sources."glob-base-0.3.0" sources."glob-parent-2.0.0" - sources."graceful-fs-4.1.11" + sources."graceful-fs-4.1.15" (sources."has-value-1.0.0" // { dependencies = [ sources."isobject-3.0.1" @@ -46691,7 +48766,7 @@ in sources."statuses-1.5.0" ]; }) - sources."http-parser-js-0.4.13" + sources."http-parser-js-0.5.0" sources."inherits-2.0.3" (sources."is-accessor-descriptor-1.0.0" // { dependencies = [ @@ -46734,8 +48809,8 @@ in sources."math-random-1.0.1" sources."micromatch-2.3.11" sources."mime-1.4.1" - sources."mime-db-1.36.0" - sources."mime-types-2.1.20" + sources."mime-db-1.37.0" + sources."mime-types-2.1.21" (sources."mixin-deep-1.3.1" // { dependencies = [ sources."is-extendable-1.0.1" @@ -46789,7 +48864,7 @@ in sources."preserve-0.2.0" sources."process-nextick-args-2.0.0" sources."proxy-middleware-0.15.0" - (sources."randomatic-3.1.0" // { + (sources."randomatic-3.1.1" // { dependencies = [ sources."is-number-4.0.0" sources."kind-of-6.0.2" @@ -47005,7 +49080,7 @@ in sources."bcrypt-pbkdf-1.0.2" sources."better-assert-1.0.2" sources."binary-extensions-1.12.0" - sources."blob-0.0.4" + sources."blob-0.0.5" sources."body-parser-1.18.3" sources."braces-1.8.5" sources."bytes-3.0.0" @@ -47062,7 +49137,7 @@ in sources."ee-first-1.1.1" sources."emoji-regex-6.1.1" sources."encodeurl-1.0.2" - (sources."engine.io-3.2.0" // { + (sources."engine.io-3.2.1" // { dependencies = [ sources."debug-3.1.0" ]; @@ -47072,8 +49147,8 @@ in sources."debug-3.1.0" ]; }) - sources."engine.io-parser-2.1.2" - sources."entities-1.1.1" + sources."engine.io-parser-2.1.3" + sources."entities-1.1.2" sources."escape-html-1.0.3" sources."etag-1.8.1" sources."expand-brackets-0.1.5" @@ -47103,11 +49178,7 @@ in sources."for-in-1.0.2" sources."for-own-0.1.5" sources."forever-agent-0.6.1" - (sources."form-data-2.3.2" // { - dependencies = [ - sources."combined-stream-1.0.6" - ]; - }) + sources."form-data-2.3.3" sources."forwarded-0.1.2" sources."fragment-cache-0.2.1" sources."fresh-0.5.2" @@ -47117,7 +49188,7 @@ in sources."github-slugger-1.2.0" sources."glob-base-0.3.0" sources."glob-parent-2.0.0" - sources."graceful-fs-4.1.11" + sources."graceful-fs-4.1.15" sources."har-schema-2.0.0" sources."har-validator-5.1.0" (sources."has-binary2-1.0.3" // { @@ -47205,8 +49276,8 @@ in sources."methods-1.1.2" sources."micromatch-2.3.11" sources."mime-1.4.1" - sources."mime-db-1.36.0" - sources."mime-types-2.1.20" + sources."mime-db-1.37.0" + sources."mime-types-2.1.21" sources."minimist-1.2.0" (sources."mixin-deep-1.3.1" // { dependencies = [ @@ -47266,7 +49337,7 @@ in sources."psl-1.1.29" sources."punycode-1.4.1" sources."qs-6.5.2" - (sources."randomatic-3.1.0" // { + (sources."randomatic-3.1.1" // { dependencies = [ sources."is-number-4.0.0" sources."kind-of-6.0.2" @@ -47396,7 +49467,7 @@ in sources."source-map-url-0.4.0" sources."split-string-3.1.0" sources."sprintf-js-1.0.3" - sources."sshpk-1.15.1" + sources."sshpk-1.15.2" (sources."static-extend-0.1.2" // { dependencies = [ sources."define-property-0.2.5" @@ -47468,166 +49539,330 @@ in production = true; bypassCache = true; }; - madoko = nodeEnv.buildNodePackage { - name = "madoko"; - packageName = "madoko"; - version = "1.1.4"; - src = fetchurl { - url = "https://registry.npmjs.org/madoko/-/madoko-1.1.4.tgz"; - sha1 = "3a2bec6219a2658fcb955494a21d0db11a9e6fe4"; - }; + "lumo-build-deps-../interpreters/clojurescript/lumo" = nodeEnv.buildNodePackage { + name = "lumo-build-deps"; + packageName = "lumo-build-deps"; + version = "1.9.0"; + src = ../interpreters/clojurescript/lumo; dependencies = [ + sources."@babel/code-frame-7.0.0" + sources."@babel/core-7.1.5" + sources."@babel/generator-7.1.5" + sources."@babel/helper-annotate-as-pure-7.0.0" + sources."@babel/helper-builder-binary-assignment-operator-visitor-7.1.0" + sources."@babel/helper-call-delegate-7.1.0" + sources."@babel/helper-define-map-7.1.0" + sources."@babel/helper-explode-assignable-expression-7.1.0" + sources."@babel/helper-function-name-7.1.0" + sources."@babel/helper-get-function-arity-7.0.0" + sources."@babel/helper-hoist-variables-7.0.0" + sources."@babel/helper-member-expression-to-functions-7.0.0" + sources."@babel/helper-module-imports-7.0.0" + sources."@babel/helper-module-transforms-7.1.0" + sources."@babel/helper-optimise-call-expression-7.0.0" + sources."@babel/helper-plugin-utils-7.0.0" + sources."@babel/helper-regex-7.0.0" + sources."@babel/helper-remap-async-to-generator-7.1.0" + sources."@babel/helper-replace-supers-7.1.0" + sources."@babel/helper-simple-access-7.1.0" + sources."@babel/helper-split-export-declaration-7.0.0" + sources."@babel/helper-wrap-function-7.1.0" + sources."@babel/helpers-7.1.5" + sources."@babel/highlight-7.0.0" + sources."@babel/parser-7.1.5" + sources."@babel/plugin-external-helpers-7.0.0" + sources."@babel/plugin-proposal-async-generator-functions-7.1.0" + sources."@babel/plugin-proposal-class-properties-7.1.0" + sources."@babel/plugin-proposal-json-strings-7.0.0" + sources."@babel/plugin-proposal-object-rest-spread-7.0.0" + sources."@babel/plugin-proposal-optional-catch-binding-7.0.0" + sources."@babel/plugin-proposal-unicode-property-regex-7.0.0" + sources."@babel/plugin-syntax-async-generators-7.0.0" + sources."@babel/plugin-syntax-class-properties-7.0.0" + sources."@babel/plugin-syntax-json-strings-7.0.0" + sources."@babel/plugin-syntax-object-rest-spread-7.0.0" + sources."@babel/plugin-syntax-optional-catch-binding-7.0.0" + sources."@babel/plugin-transform-arrow-functions-7.0.0" + sources."@babel/plugin-transform-async-to-generator-7.1.0" + sources."@babel/plugin-transform-block-scoped-functions-7.0.0" + sources."@babel/plugin-transform-block-scoping-7.1.5" + sources."@babel/plugin-transform-classes-7.1.0" + sources."@babel/plugin-transform-computed-properties-7.0.0" + sources."@babel/plugin-transform-destructuring-7.1.3" + sources."@babel/plugin-transform-dotall-regex-7.0.0" + sources."@babel/plugin-transform-duplicate-keys-7.0.0" + sources."@babel/plugin-transform-exponentiation-operator-7.1.0" + sources."@babel/plugin-transform-for-of-7.0.0" + sources."@babel/plugin-transform-function-name-7.1.0" + sources."@babel/plugin-transform-literals-7.0.0" + sources."@babel/plugin-transform-modules-amd-7.1.0" + sources."@babel/plugin-transform-modules-commonjs-7.1.0" + sources."@babel/plugin-transform-modules-systemjs-7.1.3" + sources."@babel/plugin-transform-modules-umd-7.1.0" + sources."@babel/plugin-transform-new-target-7.0.0" + sources."@babel/plugin-transform-object-super-7.1.0" + sources."@babel/plugin-transform-parameters-7.1.0" + sources."@babel/plugin-transform-regenerator-7.0.0" + sources."@babel/plugin-transform-runtime-7.1.0" + sources."@babel/plugin-transform-shorthand-properties-7.0.0" + sources."@babel/plugin-transform-spread-7.0.0" + sources."@babel/plugin-transform-sticky-regex-7.0.0" + sources."@babel/plugin-transform-template-literals-7.0.0" + sources."@babel/plugin-transform-typeof-symbol-7.0.0" + sources."@babel/plugin-transform-unicode-regex-7.0.0" + sources."@babel/preset-env-7.1.5" + sources."@babel/preset-stage-2-7.0.0" + sources."@babel/runtime-7.1.5" + sources."@babel/template-7.1.2" + sources."@babel/traverse-7.1.5" + sources."@babel/types-7.1.5" + sources."@calebboyd/semaphore-1.3.1" + sources."@comandeer/babel-plugin-banner-4.0.0" + sources."@mrmlnc/readdir-enhanced-2.2.1" + sources."@nodelib/fs.stat-1.1.3" + sources."@sindresorhus/is-0.7.0" + sources."@szmarczak/http-timer-1.1.1" + sources."@types/estree-0.0.39" + sources."@types/node-10.12.5" + sources."@webassemblyjs/ast-1.7.11" + sources."@webassemblyjs/floating-point-hex-parser-1.7.11" + sources."@webassemblyjs/helper-api-error-1.7.11" + sources."@webassemblyjs/helper-buffer-1.7.11" + sources."@webassemblyjs/helper-code-frame-1.7.11" + sources."@webassemblyjs/helper-fsm-1.7.11" + sources."@webassemblyjs/helper-module-context-1.7.11" + sources."@webassemblyjs/helper-wasm-bytecode-1.7.11" + sources."@webassemblyjs/helper-wasm-section-1.7.11" + sources."@webassemblyjs/ieee754-1.7.11" + sources."@webassemblyjs/leb128-1.7.11" + sources."@webassemblyjs/utf8-1.7.11" + sources."@webassemblyjs/wasm-edit-1.7.11" + sources."@webassemblyjs/wasm-gen-1.7.11" + sources."@webassemblyjs/wasm-opt-1.7.11" + sources."@webassemblyjs/wasm-parser-1.7.11" + sources."@webassemblyjs/wast-parser-1.7.11" + sources."@webassemblyjs/wast-printer-1.7.11" + sources."@xtuc/ieee754-1.2.0" + sources."@xtuc/long-4.2.1" + sources."ace.improved-0.2.1" + sources."acorn-5.7.3" + sources."acorn-dynamic-import-3.0.0" + sources."ajv-6.5.5" + sources."ajv-keywords-3.2.0" sources."amdefine-1.0.1" - sources."minimist-0.0.8" - sources."mkdirp-0.5.1" - sources."requirejs-2.3.6" - ]; - buildInputs = globalBuildInputs; - meta = { - description = "Madoko is a fast scholarly Markdown processor written in Koka"; - homepage = http://madoko.codeplex.com/; - }; - production = true; - bypassCache = true; - }; - mathjax = nodeEnv.buildNodePackage { - name = "mathjax"; - packageName = "mathjax"; - version = "2.7.5"; - src = fetchurl { - url = "https://registry.npmjs.org/mathjax/-/mathjax-2.7.5.tgz"; - sha512 = "OzsJNitEHAJB3y4IIlPCAvS0yoXwYjlo2Y4kmm9KQzyIBZt2d8yKRalby3uTRNN4fZQiGL2iMXjpdP1u2Rq2DQ=="; - }; - buildInputs = globalBuildInputs; - meta = { - description = "Beautiful math in all browsers. MathJax is an open-source JavaScript display engine for LaTeX, MathML, and AsciiMath notation that works in all browsers."; - homepage = "https://github.com/mathjax/MathJax#readme"; - license = "Apache-2.0"; - }; - production = true; - bypassCache = true; - }; - meat = nodeEnv.buildNodePackage { - name = "meat"; - packageName = "meat"; - version = "0.3.4"; - src = fetchurl { - url = "https://registry.npmjs.org/meat/-/meat-0.3.4.tgz"; - sha1 = "e2b6b721014096e30de9c97114e1dd6696135d13"; - }; - dependencies = [ - sources."async-0.1.22" - sources."colors-0.6.2" - sources."commander-0.6.1" - sources."connect-1.9.2" - sources."cycle-1.0.3" - sources."express-2.5.11" - sources."eyes-0.1.8" - sources."formidable-1.0.17" - sources."jade-0.27.0" - sources."mime-1.2.4" - sources."mkdirp-0.3.0" - sources."node.extend-1.0.0" - sources."open-0.0.2" - sources."pkginfo-0.2.3" - sources."qs-0.4.2" - sources."request-2.9.203" - sources."stack-trace-0.0.10" - sources."winston-0.6.2" - ]; - buildInputs = globalBuildInputs; - meta = { - description = "Meeting room kiosk app for displaying meeting room schedules and booking rooms in your organization. Built against Google Apps, but other sources can be defined."; - homepage = https://bitbucket.org/aahmed/meat; - }; - production = true; - bypassCache = true; - }; - meguca = nodeEnv.buildNodePackage { - name = "meguca"; - packageName = "meguca"; - version = "1.1.2"; - src = fetchurl { - url = "https://registry.npmjs.org/meguca/-/meguca-1.1.2.tgz"; - sha512 = "WW3e3r7fCcjX5GH793OaF2SVMdMAhljVZNNCLBXrQhe7RhbhZiEVIGR/6lDLxgySfIF7Hf33ANoH1ytehnxnbg=="; - }; - dependencies = [ - (sources."@gulp-sourcemaps/identity-map-1.0.2" // { + sources."ansi-regex-2.1.1" + sources."ansi-styles-2.2.1" + (sources."anymatch-2.0.0" // { dependencies = [ - sources."readable-stream-2.3.6" - sources."source-map-0.6.1" - sources."string_decoder-1.1.1" - sources."through2-2.0.3" + sources."arr-diff-4.0.0" + sources."array-unique-0.3.2" + sources."braces-2.3.2" + sources."debug-2.6.9" + sources."define-property-1.0.0" + (sources."expand-brackets-2.1.4" // { + dependencies = [ + sources."define-property-0.2.5" + ]; + }) + sources."extend-shallow-2.0.1" + sources."extglob-2.0.4" + sources."fill-range-4.0.0" + (sources."is-accessor-descriptor-0.1.6" // { + dependencies = [ + sources."kind-of-3.2.2" + ]; + }) + (sources."is-data-descriptor-0.1.4" // { + dependencies = [ + sources."kind-of-3.2.2" + ]; + }) + (sources."is-descriptor-0.1.6" // { + dependencies = [ + sources."kind-of-5.1.0" + ]; + }) + (sources."is-number-3.0.0" // { + dependencies = [ + sources."kind-of-3.2.2" + ]; + }) + sources."isobject-3.0.1" + sources."kind-of-6.0.2" + sources."micromatch-3.1.10" + sources."ms-2.0.0" ]; }) - (sources."@gulp-sourcemaps/map-sources-1.0.0" // { + sources."app-builder-5.2.0" + sources."aproba-1.2.0" + (sources."archive-type-4.0.0" // { dependencies = [ - sources."readable-stream-2.3.6" - sources."string_decoder-1.1.1" - sources."through2-2.0.3" + sources."file-type-4.4.0" ]; }) - (sources."accord-0.29.0" // { + sources."arr-diff-2.0.0" + sources."arr-flatten-1.1.0" + sources."arr-union-3.1.0" + sources."array-union-1.0.2" + sources."array-uniq-1.0.3" + sources."array-unique-0.2.1" + sources."arrify-1.0.1" + sources."asn1.js-4.10.1" + (sources."assert-1.4.1" // { dependencies = [ - sources."glob-7.1.3" - sources."minimatch-3.0.4" - sources."semver-5.6.0" - sources."uglify-js-2.8.29" + sources."inherits-2.0.1" + sources."util-0.10.3" ]; }) - sources."acorn-5.7.3" - sources."ajv-5.5.2" - (sources."align-text-0.1.4" // { + sources."assign-symbols-1.0.0" + sources."async-each-1.0.1" + sources."async-retry-1.2.3" + sources."atob-2.1.2" + (sources."babel-code-frame-6.26.0" // { dependencies = [ - sources."kind-of-3.2.2" + sources."chalk-1.1.3" + sources."js-tokens-3.0.2" ]; }) - sources."almond-0.3.3" - sources."ansi-colors-1.1.0" - sources."ansi-cyan-0.1.1" - sources."ansi-gray-0.1.1" - sources."ansi-red-0.1.1" - sources."ansi-regex-2.1.1" - sources."ansi-styles-2.2.1" - sources."ansi-wrap-0.1.0" - sources."append-buffer-1.0.2" - sources."archy-1.0.0" - sources."arr-diff-4.0.0" - sources."arr-flatten-1.1.0" - sources."arr-union-3.1.0" - sources."array-differ-1.0.0" - sources."array-each-1.0.1" - sources."array-slice-1.1.0" - sources."array-uniq-1.0.3" - sources."array-unique-0.3.2" - sources."asap-2.0.6" - sources."asn1-0.2.4" - sources."assert-plus-1.0.0" - sources."assign-symbols-1.0.0" - sources."asynckit-0.4.0" - sources."atob-2.1.2" - sources."aws-sign2-0.7.0" - sources."aws4-1.8.0" + sources."babel-core-7.0.0-bridge.0" + sources."babel-eslint-10.0.1" + (sources."babel-generator-6.26.1" // { + dependencies = [ + sources."jsesc-1.3.0" + ]; + }) + sources."babel-helper-evaluate-path-0.5.0" + sources."babel-helper-flip-expressions-0.4.3" + sources."babel-helper-is-nodes-equiv-0.0.1" + sources."babel-helper-is-void-0-0.4.3" + sources."babel-helper-mark-eval-scopes-0.4.3" + sources."babel-helper-remove-or-void-0.4.3" + sources."babel-helper-to-multiple-sequence-expressions-0.5.0" + sources."babel-jest-23.6.0" + sources."babel-loader-8.0.4" + sources."babel-messages-6.23.0" + sources."babel-plugin-istanbul-4.1.6" + sources."babel-plugin-jest-hoist-23.2.0" + sources."babel-plugin-minify-builtins-0.5.0" + sources."babel-plugin-minify-constant-folding-0.5.0" + sources."babel-plugin-minify-dead-code-elimination-0.5.0" + sources."babel-plugin-minify-flip-comparisons-0.4.3" + sources."babel-plugin-minify-guarded-expressions-0.4.3" + sources."babel-plugin-minify-infinity-0.4.3" + sources."babel-plugin-minify-mangle-names-0.5.0" + sources."babel-plugin-minify-numeric-literals-0.4.3" + sources."babel-plugin-minify-replace-0.5.0" + sources."babel-plugin-minify-simplify-0.5.0" + sources."babel-plugin-minify-type-constructors-0.4.3" + sources."babel-plugin-syntax-flow-6.18.0" + sources."babel-plugin-syntax-object-rest-spread-6.13.0" + sources."babel-plugin-transform-flow-strip-types-6.22.0" + sources."babel-plugin-transform-inline-consecutive-adds-0.4.3" + sources."babel-plugin-transform-member-expression-literals-6.9.4" + sources."babel-plugin-transform-merge-sibling-variables-6.9.4" + sources."babel-plugin-transform-minify-booleans-6.9.4" + sources."babel-plugin-transform-property-literals-6.9.4" + sources."babel-plugin-transform-regexp-constructors-0.4.3" + sources."babel-plugin-transform-remove-console-6.9.4" + sources."babel-plugin-transform-remove-debugger-6.9.4" + sources."babel-plugin-transform-remove-undefined-0.5.0" + sources."babel-plugin-transform-simplify-comparison-operators-6.9.4" + sources."babel-plugin-transform-undefined-to-void-6.9.4" + sources."babel-preset-jest-23.2.0" + sources."babel-preset-minify-0.5.0" + (sources."babel-runtime-6.26.0" // { + dependencies = [ + sources."regenerator-runtime-0.11.1" + ]; + }) + sources."babel-template-6.26.0" + (sources."babel-traverse-6.26.0" // { + dependencies = [ + sources."debug-2.6.9" + sources."globals-9.18.0" + sources."ms-2.0.0" + ]; + }) + (sources."babel-types-6.26.0" // { + dependencies = [ + sources."to-fast-properties-1.0.3" + ]; + }) + sources."babylon-6.18.0" sources."balanced-match-1.0.0" (sources."base-0.11.2" // { dependencies = [ sources."define-property-1.0.0" + sources."isobject-3.0.1" ]; }) - sources."bcrypt-pbkdf-1.0.2" - sources."beeper-1.1.1" + sources."base64-js-0.0.8" + sources."big.js-3.2.0" + sources."binary-extensions-1.12.0" + sources."bl-1.2.2" + sources."bluebird-3.5.3" + sources."bn.js-4.11.8" sources."brace-expansion-1.1.11" - (sources."braces-2.3.2" // { + sources."braces-1.8.5" + sources."brorand-1.1.0" + sources."browserify-aes-1.2.0" + sources."browserify-cipher-1.0.1" + sources."browserify-des-1.0.2" + sources."browserify-rsa-4.0.1" + sources."browserify-sign-4.0.4" + sources."browserify-zlib-0.2.0" + sources."browserslist-4.3.4" + sources."buffer-3.6.0" + sources."buffer-alloc-1.2.0" + sources."buffer-alloc-unsafe-1.1.0" + sources."buffer-crc32-0.2.13" + sources."buffer-fill-1.0.0" + sources."buffer-from-1.1.1" + sources."buffer-xor-1.0.3" + sources."builtin-modules-1.1.1" + sources."builtin-status-codes-3.0.0" + sources."cacache-10.0.4" + (sources."cache-base-1.0.1" // { + dependencies = [ + sources."isobject-3.0.1" + ]; + }) + (sources."cacheable-request-2.1.4" // { + dependencies = [ + sources."lowercase-keys-1.0.0" + ]; + }) + sources."call-me-maybe-1.0.1" + sources."camelcase-5.0.0" + sources."caniuse-lite-1.0.30000907" + sources."caw-2.0.1" + (sources."chalk-2.4.1" // { + dependencies = [ + sources."ansi-styles-3.2.1" + sources."supports-color-5.5.0" + ]; + }) + sources."cherow-1.6.8" + (sources."chokidar-2.0.4" // { dependencies = [ + sources."array-unique-0.3.2" + sources."braces-2.3.2" sources."extend-shallow-2.0.1" + sources."fill-range-4.0.0" + (sources."glob-parent-3.1.0" // { + dependencies = [ + sources."is-glob-3.1.0" + ]; + }) + sources."is-extglob-2.1.1" + sources."is-glob-4.0.0" + sources."is-number-3.0.0" + sources."isobject-3.0.1" ]; }) - sources."buffer-equal-1.0.0" - sources."cache-base-1.0.1" - sources."camelcase-1.2.1" - sources."caseless-0.12.0" - sources."center-align-0.1.3" - sources."chalk-1.1.3" + sources."chownr-1.1.1" + sources."chrome-trace-event-1.0.0" + sources."cipher-base-1.0.4" (sources."class-utils-0.3.6" // { dependencies = [ sources."define-property-0.2.5" @@ -47642,59 +49877,1146 @@ in ]; }) sources."is-descriptor-0.1.6" + sources."isobject-3.0.1" sources."kind-of-5.1.0" ]; }) - (sources."clean-css-4.2.1" // { + sources."cli-cursor-2.1.0" + sources."cli-spinners-1.3.1" + (sources."cliui-4.1.0" // { dependencies = [ - sources."source-map-0.6.1" + sources."ansi-regex-3.0.0" + sources."strip-ansi-4.0.0" ]; }) - sources."cliui-2.1.0" - sources."clone-1.0.4" + sources."clone-2.1.2" sources."clone-buffer-1.0.0" - sources."clone-stats-0.0.1" - (sources."cloneable-readable-1.1.2" // { - dependencies = [ - sources."readable-stream-2.3.6" - sources."string_decoder-1.1.1" - ]; - }) - sources."co-4.6.0" + sources."clone-response-1.0.2" + sources."clone-stats-1.0.0" + sources."cloneable-readable-1.1.2" + sources."code-point-at-1.1.0" sources."collection-visit-1.0.0" - sources."color-support-1.1.3" - sources."combined-stream-1.0.7" - sources."commander-2.17.1" + sources."color-convert-1.9.3" + sources."color-name-1.1.3" + sources."commander-2.14.1" + sources."commondir-1.0.1" sources."component-emitter-1.2.1" sources."concat-map-0.0.1" + sources."concat-stream-1.6.2" + sources."config-chain-1.1.12" + sources."console-browserify-1.1.0" + sources."constants-browserify-1.0.0" + sources."content-disposition-0.5.2" sources."convert-source-map-1.6.0" + sources."copy-concurrently-1.0.5" sources."copy-descriptor-0.1.1" sources."core-js-2.5.7" sources."core-util-is-1.0.2" - (sources."css-2.2.4" // { + sources."create-ecdh-4.0.3" + sources."create-hash-1.2.0" + sources."create-hmac-1.1.7" + sources."cross-env-5.2.0" + sources."cross-spawn-6.0.5" + sources."crypto-browserify-3.12.0" + sources."cyclist-0.2.2" + sources."date-now-0.1.4" + sources."death-1.1.0" + sources."debug-3.2.6" + sources."decamelize-1.2.0" + sources."decode-uri-component-0.2.0" + sources."decompress-4.2.0" + sources."decompress-response-3.3.0" + (sources."decompress-tar-4.1.1" // { dependencies = [ - sources."source-map-0.6.1" + sources."file-type-5.2.0" ]; }) - sources."d-1.0.0" - sources."dashdash-1.14.1" - sources."dateformat-2.2.0" - sources."debug-2.6.9" - (sources."debug-fabulous-1.1.0" // { + (sources."decompress-tarbz2-4.1.1" // { dependencies = [ - sources."debug-3.2.6" - sources."ms-2.1.1" + sources."file-type-6.2.0" ]; }) - sources."decamelize-1.2.0" - sources."decode-uri-component-0.2.0" - sources."defaults-1.0.3" - sources."define-properties-1.1.3" - sources."define-property-2.0.2" - sources."delayed-stream-1.0.0" - sources."deprecated-0.0.1" - sources."detect-file-1.0.0" - sources."detect-newline-2.1.0" + (sources."decompress-targz-4.1.1" // { + dependencies = [ + sources."file-type-5.2.0" + ]; + }) + (sources."decompress-unzip-4.0.1" // { + dependencies = [ + sources."file-type-3.9.0" + sources."get-stream-2.3.1" + ]; + }) + (sources."defaults-1.0.3" // { + dependencies = [ + sources."clone-1.0.4" + ]; + }) + sources."defer-to-connect-1.0.1" + sources."define-properties-1.1.3" + (sources."define-property-2.0.2" // { + dependencies = [ + sources."isobject-3.0.1" + ]; + }) + sources."des.js-1.0.0" + sources."detect-indent-4.0.0" + sources."diffie-hellman-5.0.3" + (sources."dir-glob-2.0.0" // { + dependencies = [ + sources."path-type-3.0.0" + sources."pify-3.0.0" + ]; + }) + sources."domain-browser-1.2.0" + (sources."download-7.1.0" // { + dependencies = [ + sources."got-8.3.2" + sources."pify-3.0.0" + ]; + }) + sources."duplexer3-0.1.4" + sources."duplexify-3.6.1" + sources."electron-to-chromium-1.3.84" + sources."elliptic-6.4.1" + sources."emojis-list-2.1.0" + sources."end-of-stream-1.4.1" + sources."enhanced-resolve-4.1.0" + sources."errno-0.1.7" + sources."error-ex-1.3.2" + sources."es-abstract-1.12.0" + sources."es-to-primitive-1.2.0" + sources."escape-string-regexp-1.0.5" + sources."eslint-scope-3.7.1" + sources."eslint-visitor-keys-1.0.0" + sources."esrecurse-4.2.1" + sources."estraverse-4.2.0" + sources."estree-walker-0.5.2" + sources."esutils-2.0.2" + sources."events-1.1.1" + sources."evp_bytestokey-1.0.3" + sources."execa-0.10.0" + sources."expand-brackets-0.1.5" + sources."expand-range-1.8.2" + sources."ext-list-2.2.2" + sources."ext-name-5.0.0" + (sources."extend-shallow-3.0.2" // { + dependencies = [ + sources."is-extendable-1.0.1" + ]; + }) + sources."extglob-0.3.2" + sources."fast-deep-equal-2.0.1" + (sources."fast-glob-2.2.3" // { + dependencies = [ + sources."arr-diff-4.0.0" + sources."array-unique-0.3.2" + (sources."braces-2.3.2" // { + dependencies = [ + sources."extend-shallow-2.0.1" + ]; + }) + sources."debug-2.6.9" + (sources."expand-brackets-2.1.4" // { + dependencies = [ + sources."define-property-0.2.5" + sources."extend-shallow-2.0.1" + ]; + }) + (sources."extglob-2.0.4" // { + dependencies = [ + sources."define-property-1.0.0" + sources."extend-shallow-2.0.1" + ]; + }) + (sources."fill-range-4.0.0" // { + dependencies = [ + sources."extend-shallow-2.0.1" + ]; + }) + (sources."glob-parent-3.1.0" // { + dependencies = [ + sources."is-glob-3.1.0" + ]; + }) + (sources."is-accessor-descriptor-0.1.6" // { + dependencies = [ + sources."kind-of-3.2.2" + ]; + }) + (sources."is-data-descriptor-0.1.4" // { + dependencies = [ + sources."kind-of-3.2.2" + ]; + }) + (sources."is-descriptor-0.1.6" // { + dependencies = [ + sources."kind-of-5.1.0" + ]; + }) + sources."is-extglob-2.1.1" + sources."is-glob-4.0.0" + (sources."is-number-3.0.0" // { + dependencies = [ + sources."kind-of-3.2.2" + ]; + }) + sources."isobject-3.0.1" + sources."kind-of-6.0.2" + sources."micromatch-3.1.10" + sources."ms-2.0.0" + ]; + }) + sources."fast-json-stable-stringify-2.0.0" + sources."fd-slicer-1.1.0" + sources."file-type-8.1.0" + sources."filename-regex-2.0.1" + sources."filename-reserved-regex-2.0.0" + sources."filenamify-2.1.0" + sources."fill-range-2.2.4" + sources."find-cache-dir-1.0.0" + sources."find-up-2.1.0" + sources."flow-bin-0.85.0" + sources."flush-write-stream-1.0.3" + sources."for-in-1.0.2" + sources."for-own-0.1.5" + sources."fragment-cache-0.2.1" + sources."from2-2.3.0" + sources."fs-constants-1.0.0" + sources."fs-write-stream-atomic-1.0.10" + sources."fs.realpath-1.0.0" + sources."fsevents-1.2.4" + sources."function-bind-1.1.1" + sources."get-caller-file-1.0.3" + sources."get-proxy-2.1.0" + sources."get-stream-3.0.0" + sources."get-value-2.0.6" + sources."glob-7.1.3" + sources."glob-base-0.3.0" + sources."glob-parent-2.0.0" + sources."glob-to-regexp-0.3.0" + sources."global-modules-path-2.3.0" + sources."globals-11.8.0" + (sources."globby-8.0.1" // { + dependencies = [ + sources."pify-3.0.0" + ]; + }) + (sources."google-closure-compiler-js-20170910.0.1" // { + dependencies = [ + sources."minimist-1.2.0" + ]; + }) + (sources."got-9.3.2" // { + dependencies = [ + sources."@sindresorhus/is-0.12.0" + sources."cacheable-request-5.1.0" + sources."get-stream-4.1.0" + sources."http-cache-semantics-4.0.0" + sources."normalize-url-3.3.0" + sources."p-cancelable-1.0.0" + ]; + }) + sources."graceful-fs-4.1.15" + sources."graceful-readlink-1.0.1" + sources."has-1.0.3" + sources."has-ansi-2.0.0" + sources."has-flag-3.0.0" + sources."has-symbol-support-x-1.4.2" + sources."has-symbols-1.0.0" + sources."has-to-string-tag-x-1.4.1" + (sources."has-value-1.0.0" // { + dependencies = [ + sources."isobject-3.0.1" + ]; + }) + (sources."has-values-1.0.0" // { + dependencies = [ + (sources."is-number-3.0.0" // { + dependencies = [ + sources."kind-of-3.2.2" + ]; + }) + sources."kind-of-4.0.0" + ]; + }) + sources."hash-base-3.0.4" + sources."hash.js-1.1.5" + sources."hmac-drbg-1.0.1" + sources."hosted-git-info-2.7.1" + sources."http-cache-semantics-3.8.1" + sources."https-browserify-1.0.0" + sources."ieee754-1.1.12" + sources."iferr-0.1.5" + sources."ignore-3.3.10" + (sources."import-local-2.0.0" // { + dependencies = [ + sources."find-up-3.0.0" + sources."locate-path-3.0.0" + sources."p-limit-2.0.0" + sources."p-locate-3.0.0" + sources."p-try-2.0.0" + sources."pkg-dir-3.0.0" + ]; + }) + sources."imurmurhash-0.1.4" + sources."indexof-0.0.1" + sources."inflight-1.0.6" + sources."inherits-2.0.3" + sources."ini-1.3.5" + sources."interpret-1.1.0" + sources."into-stream-3.1.0" + sources."invariant-2.2.4" + sources."invert-kv-2.0.0" + (sources."is-accessor-descriptor-1.0.0" // { + dependencies = [ + sources."kind-of-6.0.2" + ]; + }) + sources."is-arrayish-0.2.1" + sources."is-binary-path-1.0.1" + sources."is-buffer-1.1.6" + sources."is-builtin-module-1.0.0" + sources."is-callable-1.1.4" + (sources."is-data-descriptor-1.0.0" // { + dependencies = [ + sources."kind-of-6.0.2" + ]; + }) + sources."is-date-object-1.0.1" + (sources."is-descriptor-1.0.2" // { + dependencies = [ + sources."kind-of-6.0.2" + ]; + }) + sources."is-dotfile-1.0.3" + sources."is-equal-shallow-0.1.3" + sources."is-extendable-0.1.1" + sources."is-extglob-1.0.0" + sources."is-finite-1.0.2" + sources."is-fullwidth-code-point-1.0.0" + sources."is-glob-2.0.1" + sources."is-module-1.0.0" + sources."is-natural-number-4.0.1" + sources."is-number-2.1.0" + sources."is-object-1.0.1" + sources."is-plain-obj-1.1.0" + (sources."is-plain-object-2.0.4" // { + dependencies = [ + sources."isobject-3.0.1" + ]; + }) + sources."is-posix-bracket-0.1.1" + sources."is-primitive-2.0.0" + sources."is-regex-1.0.4" + sources."is-retry-allowed-1.1.0" + sources."is-stream-1.1.0" + sources."is-symbol-1.0.2" + sources."is-utf8-0.2.1" + sources."is-windows-1.0.2" + sources."isarray-1.0.0" + sources."isexe-2.0.0" + sources."isobject-2.1.0" + sources."istanbul-lib-coverage-1.2.1" + sources."istanbul-lib-instrument-1.10.2" + sources."isurl-1.0.0" + sources."js-levenshtein-1.1.4" + sources."js-tokens-4.0.0" + sources."jsesc-2.5.2" + sources."json-buffer-3.0.0" + sources."json-parse-better-errors-1.0.2" + sources."json-schema-traverse-0.4.1" + sources."json5-0.5.1" + sources."jszip-git://github.com/anmonteiro/jszip#patch-1" + sources."keyv-3.0.0" + sources."kind-of-3.2.2" + sources."lcid-2.0.0" + sources."load-json-file-1.1.0" + sources."loader-runner-2.3.1" + sources."loader-utils-1.1.0" + sources."locate-path-2.0.0" + sources."lodash-4.17.11" + sources."lodash.debounce-4.0.8" + sources."lodash.isplainobject-4.0.6" + sources."lodash.some-4.6.0" + sources."log-symbols-2.2.0" + sources."loose-envify-1.4.0" + sources."lowercase-keys-1.0.1" + sources."lru-cache-4.1.3" + sources."magic-string-0.25.1" + (sources."make-dir-1.3.0" // { + dependencies = [ + sources."pify-3.0.0" + ]; + }) + sources."map-age-cleaner-0.1.2" + sources."map-cache-0.2.2" + sources."map-visit-1.0.0" + sources."math-random-1.0.1" + sources."md5.js-1.3.5" + sources."mem-4.0.0" + sources."memory-fs-0.4.1" + sources."merge2-1.2.3" + sources."micromatch-2.3.11" + sources."miller-rabin-4.0.1" + sources."mime-db-1.37.0" + sources."mimic-fn-1.2.0" + sources."mimic-response-1.0.1" + sources."minimalistic-assert-1.0.1" + sources."minimalistic-crypto-utils-1.0.1" + sources."minimatch-3.0.4" + sources."minimist-0.0.8" + (sources."mississippi-2.0.0" // { + dependencies = [ + sources."pump-2.0.1" + ]; + }) + (sources."mixin-deep-1.3.1" // { + dependencies = [ + sources."is-extendable-1.0.1" + ]; + }) + sources."mkdirp-0.5.1" + sources."move-concurrently-1.0.1" + sources."ms-2.1.1" + sources."multistream-2.1.1" + sources."nan-2.11.1" + (sources."nanomatch-1.2.13" // { + dependencies = [ + sources."arr-diff-4.0.0" + sources."array-unique-0.3.2" + sources."kind-of-6.0.2" + ]; + }) + sources."neo-async-2.6.0" + (sources."nexe-3.0.0-beta.7" // { + dependencies = [ + sources."minimist-1.2.0" + sources."pify-4.0.1" + ]; 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Built against Google Apps, but other sources can be defined."; + homepage = https://bitbucket.org/aahmed/meat; + }; + production = true; + bypassCache = true; + }; + meguca = nodeEnv.buildNodePackage { + name = "meguca"; + packageName = "meguca"; + version = "1.1.2"; + src = fetchurl { + url = "https://registry.npmjs.org/meguca/-/meguca-1.1.2.tgz"; + sha512 = "WW3e3r7fCcjX5GH793OaF2SVMdMAhljVZNNCLBXrQhe7RhbhZiEVIGR/6lDLxgySfIF7Hf33ANoH1ytehnxnbg=="; + }; + dependencies = [ + (sources."@gulp-sourcemaps/identity-map-1.0.2" // { + dependencies = [ + sources."readable-stream-2.3.6" + sources."source-map-0.6.1" + sources."string_decoder-1.1.1" + sources."through2-2.0.5" + ]; + }) + (sources."@gulp-sourcemaps/map-sources-1.0.0" // { + dependencies = [ + sources."readable-stream-2.3.6" + sources."string_decoder-1.1.1" + sources."through2-2.0.5" + ]; + }) + (sources."accord-0.29.0" // { + dependencies = [ + sources."glob-7.1.3" + sources."minimatch-3.0.4" + sources."semver-5.6.0" + sources."uglify-js-2.8.29" + ]; 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+ }) + sources."buffer-equal-1.0.0" + sources."cache-base-1.0.1" + sources."camelcase-1.2.1" + sources."caseless-0.12.0" + sources."center-align-0.1.3" + sources."chalk-1.1.3" + (sources."class-utils-0.3.6" // { + dependencies = [ + sources."define-property-0.2.5" + (sources."is-accessor-descriptor-0.1.6" // { + dependencies = [ + sources."kind-of-3.2.2" + ]; + }) + (sources."is-data-descriptor-0.1.4" // { + dependencies = [ + sources."kind-of-3.2.2" + ]; + }) + sources."is-descriptor-0.1.6" + sources."kind-of-5.1.0" + ]; + }) + (sources."clean-css-4.2.1" // { + dependencies = [ + sources."source-map-0.6.1" + ]; + }) + sources."cliui-2.1.0" + sources."clone-1.0.4" + sources."clone-buffer-1.0.0" + sources."clone-stats-0.0.1" + (sources."cloneable-readable-1.1.2" // { + dependencies = [ + sources."readable-stream-2.3.6" + sources."string_decoder-1.1.1" + ]; + }) + sources."co-4.6.0" + sources."collection-visit-1.0.0" + sources."color-support-1.1.3" + sources."combined-stream-1.0.7" + sources."commander-2.17.1" + sources."component-emitter-1.2.1" + sources."concat-map-0.0.1" + sources."convert-source-map-1.6.0" + sources."copy-descriptor-0.1.1" + sources."core-js-2.5.7" + sources."core-util-is-1.0.2" + (sources."css-2.2.4" // { + dependencies = [ + sources."source-map-0.6.1" + ]; + }) + sources."d-1.0.0" + sources."dashdash-1.14.1" + sources."dateformat-2.2.0" + sources."debug-2.6.9" + (sources."debug-fabulous-1.1.0" // { + dependencies = [ + sources."debug-3.2.6" + sources."ms-2.1.1" + ]; + }) + sources."decamelize-1.2.0" + sources."decode-uri-component-0.2.0" + sources."defaults-1.0.3" + sources."define-properties-1.1.3" + sources."define-property-2.0.2" + sources."delayed-stream-1.0.0" + sources."deprecated-0.0.1" + sources."detect-file-1.0.0" + sources."detect-newline-2.1.0" sources."dom4-2.1.3" (sources."duplexer2-0.0.2" // { dependencies = [ @@ -47773,18 +51095,14 @@ in sources."for-in-1.0.2" sources."for-own-1.0.0" sources."forever-agent-0.6.1" - (sources."form-data-2.3.2" // { - dependencies = [ - sources."combined-stream-1.0.6" - ]; - }) + sources."form-data-2.3.3" sources."fragment-cache-0.2.1" (sources."fs-mkdirp-stream-1.0.0" // { dependencies = [ - sources."graceful-fs-4.1.11" + sources."graceful-fs-4.1.15" sources."readable-stream-2.3.6" sources."string_decoder-1.1.1" - sources."through2-2.0.3" + sources."through2-2.0.5" ]; }) sources."fs.realpath-1.0.0" @@ -47827,16 +51145,16 @@ in sources."plugin-error-0.1.2" sources."readable-stream-2.3.6" sources."string_decoder-1.1.1" - sources."through2-2.0.3" + sources."through2-2.0.5" ]; }) (sources."gulp-sourcemaps-2.6.4" // { dependencies = [ - sources."graceful-fs-4.1.11" + sources."graceful-fs-4.1.15" sources."readable-stream-2.3.6" sources."source-map-0.6.1" sources."string_decoder-1.1.1" - sources."through2-2.0.3" + sources."through2-2.0.5" ]; }) (sources."gulp-typescript-5.0.0-alpha.3" // { @@ -47846,13 +51164,13 @@ in sources."clone-stats-1.0.0" sources."glob-7.1.3" sources."glob-stream-6.1.0" - sources."graceful-fs-4.1.11" + sources."graceful-fs-4.1.15" sources."minimatch-3.0.4" sources."ordered-read-streams-1.0.1" sources."readable-stream-2.3.6" sources."source-map-0.7.3" sources."string_decoder-1.1.1" - sources."through2-2.0.3" + sources."through2-2.0.5" sources."unique-stream-2.2.1" sources."vinyl-2.2.0" sources."vinyl-fs-3.0.3" @@ -47863,7 +51181,7 @@ in sources."lodash-4.17.11" sources."readable-stream-2.3.6" sources."string_decoder-1.1.1" - sources."through2-2.0.3" + sources."through2-2.0.5" ]; }) (sources."gulp-util-3.0.8" // { @@ -47872,7 +51190,7 @@ in sources."readable-stream-2.3.6" sources."replace-ext-0.0.1" sources."string_decoder-1.1.1" - sources."through2-2.0.3" + sources."through2-2.0.5" sources."vinyl-0.5.3" ]; }) @@ -47941,7 +51259,7 @@ in (sources."less-3.8.1" // { dependencies = [ sources."clone-2.1.2" - sources."graceful-fs-4.1.11" + sources."graceful-fs-4.1.15" sources."source-map-0.6.1" ]; }) @@ -47981,8 +51299,8 @@ in sources."memoizee-0.4.14" sources."micromatch-3.1.10" sources."mime-1.6.0" - sources."mime-db-1.36.0" - sources."mime-types-2.1.20" + sources."mime-db-1.37.0" + sources."mime-types-2.1.21" sources."minimatch-2.0.10" sources."minimist-1.2.0" (sources."mixin-deep-1.3.1" // { @@ -48067,7 +51385,7 @@ in dependencies = [ sources."readable-stream-2.3.6" sources."string_decoder-1.1.1" - sources."through2-2.0.3" + sources."through2-2.0.5" ]; }) sources."remove-trailing-separator-1.1.0" @@ -48125,7 +51443,7 @@ in sources."source-map-url-0.4.0" sources."sparkles-1.0.1" sources."split-string-3.1.0" - sources."sshpk-1.15.1" + sources."sshpk-1.15.2" (sources."static-extend-0.1.2" // { dependencies = [ sources."define-property-0.2.5" @@ -48155,7 +51473,7 @@ in dependencies = [ sources."readable-stream-2.3.6" sources."string_decoder-1.1.1" - sources."through2-2.0.3" + sources."through2-2.0.5" ]; }) sources."tildify-1.2.0" @@ -48173,13 +51491,13 @@ in dependencies = [ sources."readable-stream-2.3.6" sources."string_decoder-1.1.1" - sources."through2-2.0.3" + sources."through2-2.0.5" ]; }) sources."tough-cookie-2.4.3" sources."tunnel-agent-0.6.0" sources."tweetnacl-0.14.5" - sources."typescript-3.1.3" + sources."typescript-3.1.6" (sources."uglify-js-3.4.9" // { dependencies = [ sources."source-map-0.6.1" @@ -48222,7 +51540,7 @@ in dependencies = [ sources."clone-2.1.2" sources."clone-stats-1.0.0" - sources."graceful-fs-4.1.11" + sources."graceful-fs-4.1.15" sources."vinyl-2.2.0" ]; }) @@ -48297,7 +51615,7 @@ in dependencies = [ sources."argparse-1.0.10" sources."asynckit-0.4.0" - sources."combined-stream-1.0.6" + sources."combined-stream-1.0.7" sources."commander-2.19.0" sources."component-emitter-1.2.1" sources."cookiejar-2.1.2" @@ -48306,7 +51624,7 @@ in sources."delayed-stream-1.0.0" sources."esprima-4.0.1" sources."extend-3.0.2" - sources."form-data-2.3.2" + sources."form-data-2.3.3" sources."formidable-1.2.1" sources."graphlib-2.1.5" sources."inherits-2.0.3" @@ -48316,8 +51634,8 @@ in sources."lodash-4.17.11" sources."methods-1.1.2" sources."mime-1.6.0" - sources."mime-db-1.36.0" - sources."mime-types-2.1.20" + sources."mime-db-1.37.0" + sources."mime-types-2.1.21" sources."ms-2.1.1" sources."native-promise-only-0.8.1" sources."path-loader-1.0.9" @@ -48405,11 +51723,7 @@ in sources."findit-2.0.0" sources."foreachasync-3.0.0" sources."forever-agent-0.6.1" - (sources."form-data-2.3.2" // { - dependencies = [ - sources."combined-stream-1.0.6" - ]; - }) + sources."form-data-2.3.3" (sources."fs-extra-0.6.4" // { dependencies = [ sources."mkdirp-0.3.5" @@ -48422,7 +51736,7 @@ in }) sources."gauge-2.7.4" sources."getpass-0.1.7" - sources."graceful-fs-4.1.11" + sources."graceful-fs-4.1.15" sources."har-schema-2.0.0" sources."har-validator-5.1.0" sources."has-unicode-2.0.1" @@ -48441,10 +51755,10 @@ in sources."json-stringify-safe-5.0.1" sources."jsonfile-1.0.1" sources."jsprim-1.4.1" - sources."mime-db-1.36.0" - sources."mime-types-2.1.20" + sources."mime-db-1.37.0" + sources."mime-types-2.1.21" sources."minimist-0.0.8" - sources."minipass-2.3.4" + sources."minipass-2.3.5" sources."minizlib-1.1.1" sources."mkdirp-0.5.1" sources."ncp-0.4.2" @@ -48488,8 +51802,8 @@ in sources."spdx-correct-3.0.2" sources."spdx-exceptions-2.2.0" sources."spdx-expression-parse-3.0.0" - sources."spdx-license-ids-3.0.1" - sources."sshpk-1.15.1" + sources."spdx-license-ids-3.0.2" + sources."sshpk-1.15.2" sources."ssri-5.3.0" sources."string-width-1.0.2" sources."string_decoder-1.1.1" @@ -48559,17 +51873,13 @@ in sources."fast-deep-equal-1.1.0" sources."fast-json-stable-stringify-2.0.0" sources."forever-agent-0.6.1" - (sources."form-data-2.3.2" // { - dependencies = [ - sources."combined-stream-1.0.6" - ]; - }) + sources."form-data-2.3.3" sources."fs.realpath-1.0.0" sources."fstream-1.0.11" sources."gauge-2.7.4" sources."getpass-0.1.7" sources."glob-7.1.3" - sources."graceful-fs-4.1.11" + sources."graceful-fs-4.1.15" sources."har-schema-2.0.0" sources."har-validator-5.1.0" sources."has-unicode-2.0.1" @@ -48586,8 +51896,8 @@ in sources."json-schema-traverse-0.3.1" sources."json-stringify-safe-5.0.1" sources."jsprim-1.4.1" - sources."mime-db-1.36.0" - sources."mime-types-2.1.20" + sources."mime-db-1.37.0" + sources."mime-types-2.1.21" sources."minimatch-3.0.4" sources."minimist-0.0.8" sources."mkdirp-0.5.1" @@ -48614,7 +51924,7 @@ in sources."semver-5.3.0" sources."set-blocking-2.0.0" sources."signal-exit-3.0.2" - sources."sshpk-1.15.1" + sources."sshpk-1.15.2" sources."string-width-1.0.2" sources."string_decoder-1.1.1" sources."strip-ansi-3.0.1" @@ -48748,7 +52058,7 @@ in ]; }) sources."glob-5.0.15" - sources."graceful-fs-4.1.11" + sources."graceful-fs-4.1.15" sources."har-schema-1.0.5" sources."har-validator-4.2.1" sources."has-unicode-2.0.1" @@ -48794,8 +52104,8 @@ in sources."merge-descriptors-1.0.1" sources."methods-1.1.2" sources."mime-1.4.1" - sources."mime-db-1.36.0" - sources."mime-types-2.1.20" + sources."mime-db-1.37.0" + sources."mime-types-2.1.21" sources."minimatch-3.0.4" sources."minimist-1.2.0" (sources."mkdirp-0.5.1" // { @@ -48873,8 +52183,8 @@ in sources."spdx-correct-3.0.2" sources."spdx-exceptions-2.2.0" sources."spdx-expression-parse-3.0.0" - sources."spdx-license-ids-3.0.1" - (sources."sshpk-1.15.1" // { + sources."spdx-license-ids-3.0.2" + (sources."sshpk-1.15.2" // { dependencies = [ sources."assert-plus-1.0.0" ]; @@ -48986,7 +52296,7 @@ in sources."isarray-1.0.0" sources."minimatch-3.0.4" sources."minimist-0.0.8" - sources."minipass-2.3.4" + sources."minipass-2.3.5" sources."minizlib-1.1.1" sources."mkdirp-0.5.1" sources."ms-2.0.0" @@ -49020,7 +52330,7 @@ in sources."string_decoder-1.1.1" sources."strip-ansi-3.0.1" sources."strip-json-comments-2.0.1" - sources."tar-4.4.6" + sources."tar-4.4.8" sources."util-deprecate-1.0.2" sources."wide-align-1.1.3" sources."wrappy-1.0.2" @@ -49038,10 +52348,10 @@ in nodemon = nodeEnv.buildNodePackage { name = "nodemon"; packageName = "nodemon"; - version = "1.18.4"; + version = "1.18.6"; src = fetchurl { - url = "https://registry.npmjs.org/nodemon/-/nodemon-1.18.4.tgz"; - sha512 = "hyK6vl65IPnky/ee+D3IWvVGgJa/m3No2/Xc/3wanS6Ce1MWjCzH6NnhPJ/vZM+6JFym16jtHx51lmCMB9HDtg=="; + url = "https://registry.npmjs.org/nodemon/-/nodemon-1.18.6.tgz"; + sha512 = "4pHQNYEZun+IkIC2jCaXEhkZnfA7rQe73i8RkdRyDJls/K+WxR7IpI5uNUsAvQ0zWvYcCDNGD+XVtw2ZG86/uQ=="; }; dependencies = [ sources."abbrev-1.1.1" @@ -49168,7 +52478,7 @@ in }) sources."global-dirs-0.1.1" sources."got-6.7.1" - sources."graceful-fs-4.1.11" + sources."graceful-fs-4.1.15" sources."has-flag-3.0.0" sources."has-value-1.0.0" (sources."has-values-1.0.0" // { @@ -49382,7 +52692,7 @@ in sources."use-3.1.1" sources."util-deprecate-1.0.2" sources."which-1.3.1" - sources."widest-line-2.0.0" + sources."widest-line-2.0.1" sources."write-file-atomic-2.3.0" sources."xdg-basedir-3.0.0" sources."yallist-2.1.2" @@ -49399,18 +52709,18 @@ in node-red = nodeEnv.buildNodePackage { name = "node-red"; packageName = "node-red"; - version = "0.19.4"; + version = "0.19.5"; src = fetchurl { - url = "https://registry.npmjs.org/node-red/-/node-red-0.19.4.tgz"; - sha512 = "BcFaU1bCAl0fsu6t3sSPXXPuvUiIKcHj3jrpV3zvVols+dp0zgM9xPX9N8D7978h402H8h2A+0DDQA1vENQIEA=="; + url = "https://registry.npmjs.org/node-red/-/node-red-0.19.5.tgz"; + sha512 = "Bwt5RYc77MqQjw9tSGFQHgfn6/3PTy0f9v4I4Nw4waJutGdxuAhdQJuPy6ouJpFt6CRI1ChmfJvC2ZBUMnaUCQ=="; }; dependencies = [ sources."abbrev-1.1.1" sources."accepts-1.3.5" sources."addressparser-0.3.2" sources."agent-base-4.2.1" - sources."ajv-6.5.3" - sources."append-field-0.1.0" + sources."ajv-6.5.4" + sources."append-field-1.0.0" sources."argparse-1.0.10" sources."array-flatten-1.1.1" sources."array-indexofobject-0.0.1" @@ -49422,11 +52732,15 @@ in sources."aws-sign2-0.7.0" sources."aws4-1.8.0" sources."balanced-match-1.0.0" - sources."basic-auth-2.0.0" + sources."basic-auth-2.0.1" sources."bcrypt-2.0.1" sources."bcrypt-pbkdf-1.0.2" sources."bcryptjs-2.4.3" - sources."bl-1.2.2" + (sources."bl-1.2.2" // { + dependencies = [ + sources."readable-stream-2.3.6" + ]; + }) sources."body-parser-1.18.3" sources."boolbase-1.0.0" sources."brace-expansion-1.1.11" @@ -49444,7 +52758,11 @@ in ]; }) sources."bytes-3.0.0" - sources."callback-stream-1.1.0" + (sources."callback-stream-1.1.0" // { + dependencies = [ + sources."readable-stream-2.3.6" + ]; + }) sources."caseless-0.12.0" sources."cheerio-0.22.0" sources."clone-2.1.2" @@ -49453,7 +52771,11 @@ in sources."commander-2.17.1" sources."commist-1.0.0" sources."concat-map-0.0.1" - sources."concat-stream-1.6.2" + (sources."concat-stream-1.6.2" // { + dependencies = [ + sources."readable-stream-2.3.6" + ]; + }) sources."content-disposition-0.5.2" sources."content-type-1.0.4" sources."cookie-0.3.1" @@ -49462,9 +52784,9 @@ in sources."core-util-is-1.0.2" sources."cors-2.8.4" sources."crc-3.4.4" - sources."cron-1.4.1" + sources."cron-1.5.0" sources."css-select-1.2.0" - sources."css-what-2.1.0" + sources."css-what-2.1.2" sources."d-1.0.0" sources."dashdash-1.14.1" sources."debug-2.6.9" @@ -49487,13 +52809,17 @@ in sources."domelementtype-1.3.0" sources."domhandler-2.4.2" sources."domutils-1.5.1" - sources."duplexify-3.6.1" + (sources."duplexify-3.6.1" // { + dependencies = [ + sources."readable-stream-2.3.6" + ]; + }) sources."ecc-jsbn-0.1.2" sources."ee-first-1.1.1" sources."encodeurl-1.0.2" sources."encoding-0.1.12" sources."end-of-stream-1.4.1" - sources."entities-1.1.1" + sources."entities-1.1.2" sources."es5-ext-0.10.46" sources."es6-iterator-2.0.3" sources."es6-map-0.1.5" @@ -49506,18 +52832,8 @@ in sources."esprima-4.0.1" sources."etag-1.8.1" sources."event-emitter-0.3.5" - (sources."express-4.16.3" // { + (sources."express-4.16.4" // { dependencies = [ - sources."body-parser-1.18.2" - (sources."http-errors-1.6.2" // { - dependencies = [ - sources."depd-1.1.1" - sources."setprototypeof-1.0.3" - ]; - }) - sources."iconv-lite-0.4.19" - sources."qs-6.5.1" - sources."raw-body-2.3.2" sources."statuses-1.4.0" ]; }) @@ -49529,6 +52845,7 @@ in (sources."feedparser-2.2.9" // { dependencies = [ sources."addressparser-1.0.1" + sources."readable-stream-2.3.6" ]; }) (sources."finalhandler-1.1.1" // { @@ -49537,11 +52854,7 @@ in ]; }) sources."forever-agent-0.6.1" - (sources."form-data-2.3.2" // { - dependencies = [ - sources."combined-stream-1.0.6" - ]; - }) + sources."form-data-2.3.3" sources."forwarded-0.1.2" sources."fresh-0.5.2" sources."fs-extra-5.0.0" @@ -49550,8 +52863,12 @@ in sources."getpass-0.1.7" sources."glob-7.1.3" sources."glob-parent-3.1.0" - sources."glob-stream-6.1.0" - sources."graceful-fs-4.1.11" + (sources."glob-stream-6.1.0" // { + dependencies = [ + sources."readable-stream-2.3.6" + ]; + }) + sources."graceful-fs-4.1.15" sources."har-schema-2.0.0" (sources."har-validator-5.1.0" // { dependencies = [ @@ -49562,7 +52879,7 @@ in }) sources."hash-sum-1.0.2" sources."help-me-1.1.0" - sources."htmlparser2-3.9.2" + sources."htmlparser2-3.10.0" sources."http-errors-1.6.3" sources."http-signature-1.2.0" (sources."https-proxy-agent-2.2.1" // { @@ -49636,8 +52953,8 @@ in sources."merge-descriptors-1.0.1" sources."methods-1.1.2" sources."mime-1.4.1" - sources."mime-db-1.36.0" - sources."mime-types-2.1.20" + sources."mime-db-1.37.0" + sources."mime-types-2.1.21" (sources."mimelib-0.3.1" // { dependencies = [ sources."addressparser-1.0.1" @@ -49651,16 +52968,16 @@ in ]; }) sources."moment-2.22.2" - sources."moment-timezone-0.5.21" - sources."mqtt-2.18.8" - sources."mqtt-packet-5.6.0" - sources."mri-1.1.1" - sources."ms-2.0.0" - (sources."multer-1.3.1" // { + sources."moment-timezone-0.5.23" + (sources."mqtt-2.18.8" // { dependencies = [ - sources."object-assign-3.0.0" + sources."readable-stream-2.3.6" ]; }) + sources."mqtt-packet-5.6.0" + sources."mri-1.1.1" + sources."ms-2.0.0" + sources."multer-1.4.1" sources."mustache-2.3.2" sources."nan-2.10.0" sources."needle-0.11.0" @@ -49668,8 +52985,8 @@ in sources."next-tick-1.0.0" sources."node-red-node-email-0.1.29" sources."node-red-node-feedparser-0.1.14" - sources."node-red-node-rbe-0.2.3" - sources."node-red-node-twitter-1.1.3" + sources."node-red-node-rbe-0.2.4" + sources."node-red-node-twitter-1.1.4" sources."nodemailer-1.11.0" sources."nodemailer-direct-transport-1.1.0" (sources."nodemailer-smtp-transport-1.1.0" // { @@ -49679,7 +52996,7 @@ in }) sources."nodemailer-wellknown-0.1.10" sources."nopt-4.0.1" - sources."nth-check-1.0.1" + sources."nth-check-1.0.2" sources."oauth-0.9.15" sources."oauth-sign-0.9.0" sources."oauth2orize-1.11.0" @@ -49693,7 +53010,11 @@ in ]; }) sources."options-0.0.6" - sources."ordered-read-streams-1.0.1" + (sources."ordered-read-streams-1.0.1" // { + dependencies = [ + sources."readable-stream-2.3.6" + ]; + }) sources."os-homedir-1.0.2" sources."os-tmpdir-1.0.2" sources."osenv-0.1.5" @@ -49723,19 +53044,15 @@ in sources."random-bytes-1.0.0" sources."range-parser-1.2.0" sources."raw-body-2.3.3" - sources."readable-stream-2.3.6" + sources."readable-stream-3.0.6" sources."reinterval-1.1.0" sources."remove-trailing-separator-1.1.0" - (sources."request-2.88.0" // { - dependencies = [ - sources."safe-buffer-5.1.2" - ]; - }) + sources."request-2.88.0" sources."retry-0.6.1" - sources."safe-buffer-5.1.1" + sources."safe-buffer-5.1.2" sources."safer-buffer-2.1.2" sources."sax-1.2.4" - sources."semver-5.5.1" + sources."semver-5.6.0" (sources."send-0.16.2" // { dependencies = [ sources."statuses-1.4.0" @@ -49748,12 +53065,16 @@ in sources."source-map-0.6.1" sources."split2-2.2.0" sources."sprintf-js-1.0.3" - sources."sshpk-1.15.1" + sources."sshpk-1.15.2" sources."statuses-1.5.0" sources."stream-shift-1.0.0" sources."streamsearch-0.1.2" sources."string_decoder-1.1.1" - sources."through2-2.0.3" + (sources."through2-2.0.5" // { + dependencies = [ + sources."readable-stream-2.3.6" + ]; + }) sources."through2-filter-2.0.0" sources."to-absolute-glob-2.0.2" (sources."tough-cookie-2.4.3" // { @@ -49788,6 +53109,7 @@ in sources."verror-1.10.0" (sources."websocket-stream-5.1.2" // { dependencies = [ + sources."readable-stream-2.3.6" sources."ws-3.3.3" ]; }) @@ -49906,7 +53228,7 @@ in sources."qs-0.5.1" sources."rai-0.1.12" sources."range-parser-0.0.4" - (sources."raw-socket-1.6.3" // { + (sources."raw-socket-1.6.4" // { dependencies = [ sources."nan-2.10.0" ]; @@ -50010,11 +53332,7 @@ in sources."findit-1.2.0" sources."foreachasync-3.0.0" sources."forever-agent-0.6.1" - (sources."form-data-2.3.2" // { - dependencies = [ - sources."combined-stream-1.0.6" - ]; - }) + sources."form-data-2.3.3" (sources."fs-extra-0.6.4" // { dependencies = [ sources."rimraf-2.2.8" @@ -50049,8 +53367,8 @@ in sources."json-stringify-safe-5.0.1" sources."jsonfile-1.0.1" sources."jsprim-1.4.1" - sources."mime-db-1.36.0" - sources."mime-types-2.1.20" + sources."mime-db-1.37.0" + sources."mime-types-2.1.21" sources."minimatch-3.0.4" sources."minimist-0.0.8" sources."mkdirp-0.3.5" @@ -50092,7 +53410,7 @@ in sources."set-blocking-2.0.0" sources."signal-exit-3.0.2" sources."slide-1.1.6" - sources."sshpk-1.15.1" + sources."sshpk-1.15.2" sources."string-width-1.0.2" sources."string_decoder-1.1.1" sources."strip-ansi-3.0.1" @@ -50140,7 +53458,7 @@ in sources."ansi-regex-2.1.1" sources."ansi-styles-2.2.1" sources."argparse-1.0.10" - sources."bluebird-3.5.2" + sources."bluebird-3.5.3" (sources."boxen-1.3.0" // { dependencies = [ sources."ansi-styles-3.2.1" @@ -50176,7 +53494,7 @@ in sources."get-stream-3.0.0" sources."global-dirs-0.1.1" sources."got-6.7.1" - sources."graceful-fs-4.1.11" + sources."graceful-fs-4.1.15" sources."has-ansi-2.0.0" sources."has-flag-3.0.0" sources."import-lazy-2.1.0" @@ -50264,7 +53582,7 @@ in }) sources."url-parse-lax-1.0.0" sources."which-1.3.1" - sources."widest-line-2.0.0" + sources."widest-line-2.0.1" sources."write-file-atomic-2.3.0" sources."xdg-basedir-3.0.0" sources."yallist-2.1.2" @@ -50318,7 +53636,7 @@ in sources."find-up-2.1.0" sources."get-caller-file-1.0.3" sources."get-stream-3.0.0" - sources."graceful-fs-4.1.11" + sources."graceful-fs-4.1.15" sources."has-flag-3.0.0" sources."hoek-4.2.1" sources."hosted-git-info-2.7.1" @@ -50383,7 +53701,7 @@ in sources."spdx-correct-3.0.2" sources."spdx-exceptions-2.2.0" sources."spdx-expression-parse-3.0.0" - sources."spdx-license-ids-3.0.1" + sources."spdx-license-ids-3.0.2" sources."string-width-1.0.2" sources."strip-ansi-3.0.1" sources."strip-bom-3.0.0" @@ -50490,7 +53808,7 @@ in sources."string_decoder-1.1.1" ]; }) - sources."bluebird-3.5.2" + sources."bluebird-3.5.3" (sources."body-parser-1.18.3" // { dependencies = [ sources."content-type-1.0.4" @@ -50537,7 +53855,7 @@ in sources."ecc-jsbn-0.1.2" sources."ee-first-1.1.1" sources."encodeurl-1.0.2" - sources."entities-1.1.1" + sources."entities-1.1.2" sources."error-ex-1.3.2" sources."escape-html-1.0.3" sources."esprima-4.0.1" @@ -50560,11 +53878,7 @@ in }) sources."find-up-1.1.2" sources."forever-agent-0.6.1" - (sources."form-data-2.3.2" // { - dependencies = [ - sources."combined-stream-1.0.6" - ]; - }) + sources."form-data-2.3.3" sources."forwarded-0.1.2" sources."fresh-0.5.2" sources."function-bind-1.1.1" @@ -50573,7 +53887,7 @@ in sources."get-caller-file-1.0.3" sources."getpass-0.1.7" sources."glob-6.0.4" - sources."graceful-fs-4.1.11" + sources."graceful-fs-4.1.15" (sources."handlebars-4.0.12" // { dependencies = [ sources."async-2.6.1" @@ -50592,7 +53906,7 @@ in sources."inherits-2.0.3" sources."invert-kv-1.0.0" sources."ipaddr.js-1.8.0" - sources."is-arguments-1.0.2" + sources."is-arguments-1.0.4" sources."is-arrayish-0.2.1" sources."is-builtin-module-1.0.0" sources."is-fullwidth-code-point-1.0.0" @@ -50641,12 +53955,12 @@ in sources."lodash.clone-4.3.2" sources."media-typer-0.3.0" sources."mediawiki-title-0.6.5" - sources."merge-1.2.0" + sources."merge-1.2.1" sources."merge-descriptors-1.0.1" sources."methods-1.1.2" sources."mime-1.4.1" - sources."mime-db-1.36.0" - sources."mime-types-2.1.20" + sources."mime-db-1.37.0" + sources."mime-types-2.1.21" sources."minimatch-3.0.4" sources."minimist-0.0.10" (sources."mkdirp-0.5.1" // { @@ -50728,9 +54042,9 @@ in sources."spdx-correct-3.0.2" sources."spdx-exceptions-2.2.0" sources."spdx-expression-parse-3.0.0" - sources."spdx-license-ids-3.0.1" + sources."spdx-license-ids-3.0.2" sources."sprintf-js-1.0.3" - sources."sshpk-1.15.1" + sources."sshpk-1.15.2" sources."statuses-1.5.0" sources."streamsearch-0.1.2" sources."string-width-1.0.2" @@ -50861,7 +54175,7 @@ in sources."get-browser-rtc-1.0.2" sources."get-stdin-4.0.1" sources."glob-7.1.3" - sources."graceful-fs-4.1.11" + sources."graceful-fs-4.1.15" sources."has-ansi-2.0.0" sources."has-flag-3.0.0" sources."hat-0.0.3" @@ -51010,7 +54324,7 @@ in sources."spdx-correct-3.0.2" sources."spdx-exceptions-2.2.0" sources."spdx-expression-parse-3.0.0" - sources."spdx-license-ids-3.0.1" + sources."spdx-license-ids-3.0.2" sources."speedometer-0.1.4" sources."stream-buffers-2.2.0" sources."string-width-1.0.2" @@ -51024,7 +54338,7 @@ in sources."symbol-observable-1.0.1" sources."thirty-two-1.0.2" sources."through-2.3.8" - sources."thunky-1.0.2" + sources."thunky-1.0.3" sources."tmp-0.0.33" sources."torrent-discovery-5.4.0" sources."torrent-piece-1.1.2" @@ -51240,7 +54554,7 @@ in sources."fs.realpath-1.0.0" sources."get-browser-rtc-1.0.2" sources."glob-7.1.3" - sources."graceful-fs-4.1.11" + sources."graceful-fs-4.1.15" (sources."has-binary-0.1.7" // { dependencies = [ sources."isarray-0.0.1" @@ -51297,8 +54611,8 @@ in }) sources."methods-1.1.2" sources."mime-1.3.4" - sources."mime-db-1.36.0" - sources."mime-types-2.1.20" + sources."mime-db-1.37.0" + sources."mime-types-2.1.21" sources."mimic-response-1.0.1" sources."minimatch-3.0.4" sources."minimist-0.0.8" @@ -51454,7 +54768,7 @@ in sources."string_decoder-1.1.1" sources."tar-stream-1.6.2" sources."thirty-two-0.0.2" - sources."thunky-1.0.2" + sources."thunky-1.0.3" sources."to-array-0.1.4" sources."to-buffer-1.1.1" sources."toidentifier-1.0.0" @@ -51502,7 +54816,7 @@ in packageName = "phantomjs"; version = "2.1.7"; src = fetchurl { - url = "https://registry.npmjs.org/phantomjs/-/phantomjs-2.1.7.tgz"; + url = "http://registry.npmjs.org/phantomjs/-/phantomjs-2.1.7.tgz"; sha1 = "c6910f67935c37285b6114329fc2f27d5f3e3134"; }; dependencies = [ @@ -51550,7 +54864,7 @@ in ]; }) sources."glob-7.1.3" - sources."graceful-fs-4.1.11" + sources."graceful-fs-4.1.15" sources."har-validator-2.0.6" sources."has-ansi-2.0.0" sources."hasha-2.2.0" @@ -51580,8 +54894,8 @@ in sources."kew-0.7.0" sources."klaw-1.3.1" sources."lodash-4.17.11" - sources."mime-db-1.36.0" - sources."mime-types-2.1.20" + sources."mime-db-1.37.0" + sources."mime-types-2.1.21" sources."minimatch-3.0.4" sources."minimist-0.0.8" sources."mkdirp-0.5.0" @@ -51601,7 +54915,7 @@ in sources."rimraf-2.6.2" sources."safer-buffer-2.1.2" sources."sntp-1.0.9" - (sources."sshpk-1.15.1" // { + (sources."sshpk-1.15.2" // { dependencies = [ sources."assert-plus-1.0.0" ]; @@ -51638,10 +54952,10 @@ in pnpm = nodeEnv.buildNodePackage { name = "pnpm"; packageName = "pnpm"; - version = "2.16.3"; + version = "2.17.8"; src = fetchurl { - url = "https://registry.npmjs.org/pnpm/-/pnpm-2.16.3.tgz"; - sha512 = "W63qZOC9YGr+33JYvZjvhzvYL4YKT2gAywDJQrHvKTL6vmnnSh+GdM3ZdGIIZ6A57YB3NgvQaq/BJ2uYjwn3ZQ=="; + url = "https://registry.npmjs.org/pnpm/-/pnpm-2.17.8.tgz"; + sha512 = "Lfqyq7foOu0HTHhimOAOmgDwN5uH1e4VwfyRnTJgalhVC317QL9y1df6jHATGf0Vy3uhW3AAt4JMuX48wDeFlg=="; }; buildInputs = globalBuildInputs; meta = { @@ -51655,10 +54969,10 @@ in prettier = nodeEnv.buildNodePackage { name = "prettier"; packageName = "prettier"; - version = "1.14.3"; + version = "1.15.2"; src = fetchurl { - url = "https://registry.npmjs.org/prettier/-/prettier-1.14.3.tgz"; - sha512 = "qZDVnCrnpsRJJq5nSsiHCE3BYMED2OtsI+cmzIzF1QIfqm5ALf8tEJcO27zV1gKNKRPdhjO0dNWnrzssDQ1tFg=="; + url = "https://registry.npmjs.org/prettier/-/prettier-1.15.2.tgz"; + sha512 = "YgPLFFA0CdKL4Eg2IHtUSjzj/BWgszDHiNQAe0VAIBse34148whfdzLagRL+QiKS+YfK5ftB6X4v/MBw8yCoug=="; }; buildInputs = globalBuildInputs; meta = { @@ -51679,8 +54993,9 @@ in }; dependencies = [ sources."JSONStream-1.3.5" - sources."acorn-6.0.2" - sources."acorn-node-1.6.0" + sources."acorn-6.0.4" + sources."acorn-dynamic-import-4.0.0" + sources."acorn-node-1.6.2" sources."acorn-walk-6.1.0" sources."anymatch-2.0.0" sources."arr-diff-4.0.0" @@ -51752,7 +55067,7 @@ in sources."buffer-xor-1.0.3" sources."builtin-status-codes-3.0.0" sources."cache-base-1.0.1" - sources."cached-path-relative-1.0.1" + sources."cached-path-relative-1.0.2" sources."chokidar-2.0.4" sources."cipher-base-1.0.4" (sources."class-utils-0.3.6" // { @@ -51852,7 +55167,7 @@ in sources."is-glob-3.1.0" ]; }) - sources."graceful-fs-4.1.11" + sources."graceful-fs-4.1.15" sources."has-1.0.3" sources."has-value-1.0.0" (sources."has-values-1.0.0" // { @@ -52077,7 +55392,7 @@ in ]; }) sources."through-2.3.8" - sources."through2-2.0.3" + sources."through2-2.0.5" sources."timers-browserify-1.4.2" sources."to-arraybuffer-1.0.1" (sources."to-object-path-0.3.0" // { @@ -52087,7 +55402,7 @@ in }) sources."to-regex-3.0.2" sources."to-regex-range-2.1.1" - sources."tree-kill-1.2.0" + sources."tree-kill-1.2.1" sources."tty-browserify-0.0.1" sources."typedarray-0.0.6" sources."umd-3.0.3" @@ -52145,7 +55460,7 @@ in }; dependencies = [ sources."@types/babel-types-7.0.4" - sources."@types/babylon-6.16.3" + sources."@types/babylon-6.16.4" sources."accepts-1.3.5" sources."acorn-3.3.0" (sources."acorn-globals-3.1.0" // { @@ -52252,7 +55567,7 @@ in ]; }) sources."github-from-package-0.0.0" - sources."graceful-fs-4.1.11" + sources."graceful-fs-4.1.15" sources."har-schema-1.0.5" sources."har-validator-4.2.1" sources."has-1.0.3" @@ -52304,8 +55619,8 @@ in sources."merge-descriptors-1.0.1" sources."methods-1.1.2" sources."mime-1.4.1" - sources."mime-db-1.36.0" - sources."mime-types-2.1.20" + sources."mime-db-1.37.0" + sources."mime-types-2.1.21" sources."minimist-0.0.8" sources."mkdirp-0.5.1" sources."morgan-1.9.1" @@ -52313,8 +55628,8 @@ in sources."nan-2.5.1" sources."negotiator-0.6.1" sources."net-browserify-alt-1.1.0" - sources."node-abi-2.4.5" - sources."node.extend-2.0.0" + sources."node-abi-2.5.0" + sources."node.extend-2.0.1" sources."noop-logger-0.1.1" sources."npmlog-4.1.2" sources."number-is-nan-1.0.1" @@ -52393,7 +55708,7 @@ in sources."simple-get-1.4.3" sources."sntp-1.0.9" sources."source-map-0.5.7" - (sources."sshpk-1.15.1" // { + (sources."sshpk-1.15.2" // { dependencies = [ sources."assert-plus-1.0.0" ]; @@ -52473,7 +55788,7 @@ in sources."esprima-3.1.3" sources."esprima-fb-13001.1001.0-dev-harmony-fb" sources."glob-5.0.15" - sources."graceful-fs-4.1.11" + sources."graceful-fs-4.1.15" sources."iconv-lite-0.4.24" sources."inflight-1.0.6" sources."inherits-2.0.3" @@ -52629,11 +55944,7 @@ in sources."fast-deep-equal-1.1.0" sources."fast-json-stable-stringify-2.0.0" sources."forever-agent-0.6.1" - (sources."form-data-2.3.2" // { - dependencies = [ - sources."combined-stream-1.0.6" - ]; - }) + sources."form-data-2.3.3" sources."formidable-1.0.11" sources."fresh-0.2.0" sources."getpass-0.1.7" @@ -52653,8 +55964,8 @@ in sources."keypress-0.1.0" sources."methods-0.1.0" sources."mime-1.2.11" - sources."mime-db-1.36.0" - sources."mime-types-2.1.20" + sources."mime-db-1.37.0" + sources."mime-types-2.1.21" sources."mkdirp-0.3.5" sources."ms-2.1.1" sources."multiparty-2.2.0" @@ -52683,7 +55994,7 @@ in sources."safer-buffer-2.1.2" sources."sax-1.2.4" sources."send-0.1.4" - sources."sshpk-1.15.1" + sources."sshpk-1.15.2" sources."stream-counter-0.2.0" sources."string-1.6.1" sources."string_decoder-0.10.31" @@ -52706,14 +56017,14 @@ in scuttlebot = nodeEnv.buildNodePackage { name = "scuttlebot"; packageName = "scuttlebot"; - version = "13.0.0"; + version = "13.0.3"; src = fetchurl { - url = "https://registry.npmjs.org/scuttlebot/-/scuttlebot-13.0.0.tgz"; - sha512 = "niRO3ySzMcXXIrx88zBMdLZ53zvC3DALiFZL42hELL0nE3ohGlhSYQNYefgPB1KiVyMomuNvlhusw9yQsYs/dQ=="; + url = "https://registry.npmjs.org/scuttlebot/-/scuttlebot-13.0.3.tgz"; + sha512 = "/Axzh0wWOSb8n9i/7t+HaN+71rj+Q7oCnObpph7WAoroHKb2GtgZALLW2ioJ10PXbRrEPHFTkHhmvBKUKRYu4w=="; }; dependencies = [ sources."abstract-leveldown-4.0.3" - (sources."aligned-block-file-1.1.3" // { + (sources."aligned-block-file-1.1.4" // { dependencies = [ sources."obv-0.0.0" ]; @@ -52737,7 +56048,7 @@ in sources."async-single-1.0.5" sources."async-write-2.1.0" sources."atob-2.1.2" - sources."atomic-file-0.0.1" + sources."atomic-file-1.1.5" sources."attach-ware-1.1.1" sources."bail-1.0.3" sources."balanced-match-1.0.0" @@ -52803,6 +56114,7 @@ in sources."code-point-at-1.1.0" sources."collapse-white-space-1.0.4" sources."collection-visit-1.0.0" + sources."colors-0.5.1" sources."commander-2.19.0" sources."compare-at-paths-1.0.0" sources."component-emitter-1.2.1" @@ -52825,7 +56137,7 @@ in sources."continuable-series-1.2.0" sources."copy-descriptor-0.1.1" sources."core-util-is-1.0.2" - sources."cross-spawn-5.1.0" + sources."cross-spawn-6.0.5" sources."debug-2.6.9" sources."decode-uri-component-0.2.0" sources."decompress-response-3.3.0" @@ -52842,18 +56154,15 @@ in sources."delegates-1.0.0" sources."detab-1.0.2" sources."detect-libc-1.0.3" + sources."discontinuous-range-1.0.0" sources."dynamic-dijkstra-1.0.0" sources."ed2curve-0.1.4" sources."elegant-spinner-1.0.1" sources."emoji-named-characters-1.0.2" sources."emoji-server-1.0.0" - (sources."encoding-down-4.0.1" // { - dependencies = [ - sources."level-codec-8.0.0" - ]; - }) + sources."encoding-down-4.0.1" sources."end-of-stream-1.4.1" - sources."epidemic-broadcast-trees-6.3.4" + sources."epidemic-broadcast-trees-6.3.5" sources."errno-0.1.7" sources."es-abstract-1.12.0" sources."es-to-primitive-1.2.0" @@ -52874,32 +56183,35 @@ in sources."fast-future-1.0.2" sources."filename-regex-2.0.1" sources."fill-range-2.2.4" - sources."flumecodec-0.0.1" - sources."flumedb-0.5.1" - (sources."flumelog-offset-3.3.2" // { + (sources."flumecodec-0.0.0" // { dependencies = [ - sources."looper-4.0.0" + sources."level-codec-6.2.0" ]; }) - (sources."flumeview-hashtable-1.0.4" // { + (sources."flumedb-1.0.1" // { dependencies = [ - sources."atomic-file-1.1.5" + sources."pull-cont-0.0.0" ]; }) + (sources."flumelog-offset-3.3.2" // { + dependencies = [ + sources."looper-4.0.0" + ]; + }) + sources."flumeview-hashtable-1.0.4" (sources."flumeview-level-3.0.6" // { dependencies = [ + sources."level-3.0.2" sources."obv-0.0.0" ]; }) (sources."flumeview-query-6.3.0" // { dependencies = [ - sources."map-filter-reduce-3.2.1" + sources."map-filter-reduce-3.2.2" ]; }) (sources."flumeview-reduce-1.3.14" // { dependencies = [ - sources."atomic-file-1.1.5" - sources."flumecodec-0.0.0" sources."obv-0.0.0" ]; }) @@ -52918,8 +56230,7 @@ in sources."glob-base-0.3.0" sources."glob-parent-2.0.0" sources."globby-4.1.0" - sources."graceful-fs-4.1.11" - sources."graphreduce-3.0.4" + sources."graceful-fs-4.1.15" sources."has-1.0.3" sources."has-ansi-2.0.0" sources."has-network-0.0.1" @@ -52949,7 +56260,7 @@ in sources."inherits-2.0.3" sources."ini-1.3.5" sources."int53-0.2.4" - sources."ip-0.3.3" + sources."ip-1.1.5" sources."irregular-plurals-1.4.0" (sources."is-accessor-descriptor-1.0.0" // { dependencies = [ @@ -52961,6 +56272,7 @@ in sources."is-binary-path-1.0.1" sources."is-buffer-1.1.6" sources."is-callable-1.1.4" + sources."is-canonical-base64-1.1.1" (sources."is-data-descriptor-1.0.0" // { dependencies = [ sources."kind-of-6.0.2" @@ -52974,7 +56286,7 @@ in ]; }) sources."is-dotfile-1.0.3" - sources."is-electron-2.1.0" + sources."is-electron-2.2.0" sources."is-equal-shallow-0.1.3" sources."is-extendable-0.1.1" sources."is-extglob-1.0.0" @@ -52998,13 +56310,22 @@ in sources."isobject-2.1.0" sources."json-buffer-2.0.11" sources."kind-of-3.2.2" - (sources."layered-graph-1.1.1" // { - dependencies = [ - sources."pull-cont-0.1.1" + sources."layered-graph-1.1.1" + (sources."level-4.0.0" // { + dependencies = [ + sources."abstract-leveldown-5.0.0" + sources."deferred-leveldown-4.0.2" + sources."encoding-down-5.0.4" + sources."level-codec-9.0.0" + sources."level-errors-2.0.0" + sources."level-iterator-stream-3.0.1" + sources."level-packager-3.1.0" + sources."leveldown-4.0.1" + sources."levelup-3.1.1" + sources."nan-2.10.0" ]; }) - sources."level-3.0.2" - sources."level-codec-6.2.0" + sources."level-codec-8.0.0" sources."level-errors-1.1.2" sources."level-iterator-stream-2.0.3" sources."level-packager-2.1.1" @@ -53045,7 +56366,6 @@ in sources."longest-streak-1.0.0" sources."looper-3.0.0" sources."lossy-store-1.2.3" - sources."lru-cache-4.1.3" sources."ltgt-2.2.1" sources."map-cache-0.2.2" sources."map-filter-reduce-2.2.1" @@ -53069,6 +56389,7 @@ in ]; }) sources."monotonic-timestamp-0.0.9" + sources."moo-0.4.3" sources."ms-2.0.0" (sources."multiblob-1.13.1" // { dependencies = [ @@ -53078,7 +56399,8 @@ in }) sources."multiblob-http-0.4.2" sources."multicb-1.2.2" - sources."multiserver-1.13.5" + sources."multiserver-1.13.7" + sources."multiserver-address-1.0.1" sources."muxrpc-6.4.1" (sources."muxrpc-validation-2.0.1" // { dependencies = [ @@ -53104,13 +56426,12 @@ in ]; }) sources."ncp-2.0.0" - sources."node-abi-2.4.5" + sources."nearley-2.15.1" + sources."nice-try-1.0.5" + sources."node-abi-2.5.0" sources."node-gyp-build-3.5.0" - (sources."non-private-ip-1.4.4" // { - dependencies = [ - sources."ip-1.1.5" - ]; - }) + sources."nomnom-1.6.2" + sources."non-private-ip-1.4.4" sources."noop-logger-0.1.1" sources."normalize-path-2.1.1" sources."normalize-uri-1.1.1" @@ -53150,7 +56471,7 @@ in sources."on-wakeup-1.0.1" sources."once-1.4.0" sources."onetime-1.1.0" - sources."opencollective-postinstall-2.0.0" + sources."opencollective-postinstall-2.0.1" sources."options-0.0.6" sources."os-homedir-1.0.2" sources."os-tmpdir-1.0.2" @@ -53161,6 +56482,7 @@ in sources."parse-glob-3.0.4" sources."pascalcase-0.1.1" sources."path-is-absolute-1.0.1" + sources."path-key-2.0.1" sources."path-parse-1.0.6" sources."pify-2.3.0" sources."pinkie-2.0.4" @@ -53172,11 +56494,10 @@ in sources."private-box-0.3.0" sources."process-nextick-args-2.0.0" sources."prr-1.0.1" - sources."pseudomap-1.0.2" - sources."pull-abortable-4.1.1" + sources."pull-abortable-4.0.0" sources."pull-box-stream-1.0.13" sources."pull-cat-1.1.11" - sources."pull-cont-0.0.0" + sources."pull-cont-0.1.1" sources."pull-core-1.1.0" (sources."pull-cursor-3.0.0" // { dependencies = [ @@ -53199,11 +56520,7 @@ in }) sources."pull-handshake-1.1.4" sources."pull-hash-1.0.0" - (sources."pull-inactivity-2.1.2" // { - dependencies = [ - sources."pull-abortable-4.0.0" - ]; - }) + sources."pull-inactivity-2.1.3" sources."pull-level-2.0.4" sources."pull-live-1.0.1" (sources."pull-looper-1.0.0" // { @@ -53225,10 +56542,9 @@ in sources."pull-rate-1.0.2" sources."pull-reader-1.3.1" sources."pull-sink-through-0.0.0" - sources."pull-sort-1.0.1" + sources."pull-sort-1.0.2" sources."pull-stream-3.6.9" - sources."pull-stream-to-stream-1.3.4" - sources."pull-stringify-1.2.2" + sources."pull-stringify-2.0.0" sources."pull-through-1.0.18" sources."pull-traverse-1.0.3" sources."pull-utf8-decoder-1.0.2" @@ -53247,7 +56563,9 @@ in sources."pump-2.0.1" sources."push-stream-10.0.4" sources."push-stream-to-pull-stream-1.0.3" - (sources."randomatic-3.1.0" // { + sources."railroad-diagrams-1.0.0" + sources."randexp-0.4.6" + (sources."randomatic-3.1.1" // { dependencies = [ sources."is-number-4.0.0" sources."kind-of-6.0.2" @@ -53327,16 +56645,8 @@ in sources."safe-buffer-5.1.2" sources."safe-regex-1.1.0" sources."secret-handshake-1.1.14" - (sources."secret-stack-4.2.4" // { - dependencies = [ - sources."ip-1.1.5" - ]; - }) - (sources."secure-scuttlebutt-18.5.0" // { - dependencies = [ - sources."deep-equal-0.2.2" - ]; - }) + sources."secret-stack-4.2.4" + sources."secure-scuttlebutt-18.6.0" sources."semver-5.6.0" sources."separator-escape-0.0.0" sources."set-blocking-2.0.0" @@ -53378,11 +56688,7 @@ in ]; }) sources."snapdragon-util-3.0.1" - (sources."socks-2.2.1" // { - dependencies = [ - sources."ip-1.1.5" - ]; - }) + sources."socks-2.2.1" sources."sodium-browserify-1.2.4" (sources."sodium-browserify-tweetnacl-0.2.3" // { dependencies = [ @@ -53390,37 +56696,29 @@ in ]; }) sources."sodium-chloride-1.1.2" - sources."sodium-native-2.2.2" + sources."sodium-native-2.2.3" sources."source-map-0.5.7" sources."source-map-resolve-0.5.2" sources."source-map-url-0.4.0" sources."split-buffer-1.0.0" sources."split-string-3.1.0" - sources."ssb-blobs-1.1.5" + sources."ssb-blobs-1.1.6" sources."ssb-client-4.6.0" - sources."ssb-config-2.3.5" - sources."ssb-ebt-5.2.3" - (sources."ssb-friends-3.1.3" // { - dependencies = [ - sources."pull-cont-0.1.1" - ]; - }) + sources."ssb-config-2.3.7" + sources."ssb-ebt-5.2.7" + sources."ssb-friends-3.1.6" sources."ssb-keys-7.1.3" sources."ssb-links-3.0.3" sources."ssb-msgs-5.2.0" (sources."ssb-query-2.3.0" // { dependencies = [ sources."flumeview-query-7.1.0" - sources."map-filter-reduce-3.2.1" + sources."map-filter-reduce-3.2.2" ]; }) - (sources."ssb-ref-2.12.0" // { - dependencies = [ - sources."ip-1.1.5" - ]; - }) - sources."ssb-validate-3.0.11" - sources."ssb-ws-3.0.0" + sources."ssb-ref-2.13.6" + sources."ssb-validate-4.0.3" + sources."ssb-ws-3.0.2" sources."stack-0.1.0" (sources."static-extend-0.1.2" // { dependencies = [ @@ -53482,6 +56780,7 @@ in sources."typewiselite-1.0.0" sources."uint48be-1.0.2" sources."ultron-1.0.2" + sources."underscore-1.4.4" sources."unherit-1.1.1" sources."unified-2.1.4" (sources."union-value-1.0.0" // { @@ -53523,7 +56822,6 @@ in sources."wrappy-1.0.2" sources."ws-1.1.5" sources."xtend-4.0.1" - sources."yallist-2.1.2" sources."zerr-1.0.4" ]; buildInputs = globalBuildInputs; @@ -53633,7 +56931,7 @@ in sources."update-check-1.5.2" sources."uri-js-4.2.2" sources."which-1.3.1" - sources."widest-line-2.0.0" + sources."widest-line-2.0.1" sources."yallist-2.1.2" ]; buildInputs = globalBuildInputs; @@ -53717,7 +57015,7 @@ in ]; }) sources."engine.io-parser-1.0.6" - sources."entities-1.1.1" + sources."entities-1.1.2" sources."escape-html-1.0.3" sources."etag-1.8.1" sources."event-stream-3.3.6" @@ -53729,11 +57027,7 @@ in sources."finalhandler-1.1.1" sources."flatmap-stream-0.1.1" sources."forever-agent-0.6.1" - (sources."form-data-2.3.2" // { - dependencies = [ - sources."combined-stream-1.0.6" - ]; - }) + sources."form-data-2.3.3" sources."forwarded-0.1.2" sources."fresh-0.5.2" sources."from-0.1.7" @@ -53772,8 +57066,8 @@ in sources."merge-descriptors-1.0.1" sources."methods-1.1.2" sources."mime-1.4.1" - sources."mime-db-1.36.0" - sources."mime-types-2.1.20" + sources."mime-db-1.37.0" + sources."mime-types-2.1.21" sources."minimist-0.0.8" sources."mkdirp-0.5.1" sources."moment-2.7.0" @@ -53835,7 +57129,7 @@ in ]; }) sources."split-1.0.1" - sources."sshpk-1.15.1" + sources."sshpk-1.15.2" sources."statuses-1.4.0" sources."stream-combiner-0.2.2" sources."string_decoder-0.10.31" @@ -53896,12 +57190,10 @@ in (sources."body-parser-1.18.3" // { dependencies = [ sources."bytes-3.0.0" + sources."debug-2.6.9" sources."http-errors-1.6.3" sources."iconv-lite-0.4.23" - sources."qs-6.5.2" sources."raw-body-2.3.3" - sources."setprototypeof-1.1.0" - sources."statuses-1.5.0" ]; }) sources."brace-expansion-1.1.11" @@ -53918,6 +57210,7 @@ in (sources."compression-1.7.3" // { dependencies = [ sources."bytes-3.0.0" + sources."debug-2.6.9" ]; }) sources."concat-map-0.0.1" @@ -53925,11 +57218,11 @@ in sources."content-type-1.0.4" sources."cookie-0.3.1" sources."cookie-signature-1.0.6" - sources."cookies-0.7.2" + sources."cookies-0.7.3" sources."core-util-is-1.0.2" sources."crypt3-0.2.0" sources."dashdash-1.14.1" - sources."debug-2.6.9" + sources."debug-3.1.0" sources."delayed-stream-1.0.0" sources."depd-1.1.2" sources."destroy-1.0.4" @@ -53945,25 +57238,25 @@ in sources."ecc-jsbn-0.1.2" sources."ee-first-1.1.1" sources."encodeurl-1.0.2" - sources."entities-1.1.1" + sources."entities-1.1.2" sources."es6-shim-0.21.1" sources."escape-html-1.0.3" sources."escape-string-regexp-1.0.5" sources."esprima-4.0.1" sources."etag-1.8.1" - sources."express-5.0.0-alpha.6" + sources."express-5.0.0-alpha.7" sources."express-json5-0.1.0" sources."extend-3.0.2" sources."extsprintf-1.3.0" sources."fast-deep-equal-1.1.0" sources."fast-json-stable-stringify-2.0.0" - sources."finalhandler-1.0.6" - sources."forever-agent-0.6.1" - (sources."form-data-2.3.2" // { + (sources."finalhandler-1.1.1" // { dependencies = [ - sources."combined-stream-1.0.6" + sources."debug-2.6.9" ]; }) + sources."forever-agent-0.6.1" + sources."form-data-2.3.3" sources."forwarded-0.1.2" sources."fresh-0.5.2" sources."fs-ext-0.6.0" @@ -53978,14 +57271,13 @@ in sources."har-validator-5.1.0" sources."has-flag-3.0.0" sources."highlight.js-8.9.1" - (sources."htmlparser2-3.9.2" // { + (sources."htmlparser2-3.10.0" // { dependencies = [ - sources."readable-stream-2.3.6" + sources."readable-stream-3.0.6" ]; }) (sources."http-errors-1.7.1" // { dependencies = [ - sources."setprototypeof-1.1.0" sources."statuses-1.5.0" ]; }) @@ -53993,9 +57285,9 @@ in sources."iconv-lite-0.4.8" sources."inflight-1.0.6" sources."inherits-2.0.3" - sources."ipaddr.js-1.4.0" + sources."ipaddr.js-1.8.0" sources."is-typedarray-1.0.0" - sources."isarray-1.0.0" + sources."isarray-0.0.1" sources."isstream-0.1.2" sources."jju-1.4.0" sources."js-yaml-3.12.0" @@ -54019,9 +57311,9 @@ in sources."media-typer-0.3.0" sources."merge-descriptors-1.0.1" sources."methods-1.1.2" - sources."mime-1.3.4" - sources."mime-db-1.36.0" - sources."mime-types-2.1.20" + sources."mime-1.4.1" + sources."mime-db-1.37.0" + sources."mime-types-2.1.21" sources."minimatch-1.0.0" sources."minimist-0.0.8" sources."mkdirp-0.5.1" @@ -54046,56 +57338,41 @@ in sources."source-map-0.6.1" ]; }) - sources."process-nextick-args-2.0.0" - sources."proxy-addr-1.1.5" + sources."proxy-addr-2.0.4" sources."psl-1.1.29" sources."punycode-1.4.1" - sources."qs-6.5.0" + sources."qs-6.5.2" sources."range-parser-1.2.0" sources."raw-body-1.3.4" (sources."readable-stream-1.1.14" // { dependencies = [ - sources."isarray-0.0.1" sources."string_decoder-0.10.31" ]; }) sources."render-readme-1.3.1" - (sources."request-2.88.0" // { - dependencies = [ - sources."qs-6.5.2" - ]; - }) + sources."request-2.88.0" sources."rimraf-2.4.5" - (sources."router-1.3.3" // { - dependencies = [ - sources."setprototypeof-1.1.0" - sources."utils-merge-1.0.1" - ]; - }) + sources."router-2.0.0-alpha.1" sources."safe-buffer-5.1.2" sources."safe-json-stringify-1.2.0" sources."safer-buffer-2.1.2" sources."sanitize-html-1.19.1" sources."semver-4.3.6" - (sources."send-0.15.6" // { + (sources."send-0.16.2" // { dependencies = [ - (sources."http-errors-1.6.3" // { - dependencies = [ - sources."statuses-1.5.0" - ]; - }) - sources."setprototypeof-1.1.0" + sources."debug-2.6.9" + sources."http-errors-1.6.3" ]; }) - sources."serve-static-1.12.6" - sources."setprototypeof-1.0.3" + sources."serve-static-1.13.2" + sources."setprototypeof-1.1.0" sources."sigmund-1.0.1" sources."sinopia-htpasswd-0.4.5" sources."source-map-0.1.43" sources."sprintf-js-1.0.3" sources."srcset-1.0.0" - sources."sshpk-1.15.1" - sources."statuses-1.3.1" + sources."sshpk-1.15.2" + sources."statuses-1.4.0" sources."string_decoder-1.1.1" sources."supports-color-5.5.0" sources."through-2.3.8" @@ -54112,7 +57389,7 @@ in }) sources."unpipe-1.0.0" sources."util-deprecate-1.0.2" - sources."utils-merge-1.0.0" + sources."utils-merge-1.0.1" sources."uuid-3.3.2" sources."vary-1.1.2" sources."verror-1.10.0" @@ -54223,7 +57500,7 @@ in sources."for-in-1.0.2" sources."fragment-cache-0.2.1" sources."get-value-2.0.6" - sources."graceful-fs-4.1.11" + sources."graceful-fs-4.1.15" sources."graceful-readlink-1.0.1" sources."has-value-1.0.0" (sources."has-values-1.0.0" // { @@ -54521,10 +57798,10 @@ in snyk = nodeEnv.buildNodePackage { name = "snyk"; packageName = "snyk"; - version = "1.103.4"; + version = "1.108.2"; src = fetchurl { - url = "https://registry.npmjs.org/snyk/-/snyk-1.103.4.tgz"; - sha512 = "ynLlsLDjAkzymd0qi1il6f34S4oNTfIgvFCFvkYxvqfBkedfOoDQT4TLU8gi+55MGM6iornf2iefC2FW92BwnQ=="; + url = "https://registry.npmjs.org/snyk/-/snyk-1.108.2.tgz"; + sha512 = "VfSHSRj4ISWf4EfySTdAVqUWnDspoFUaGs4uGp7FIbjZb35+JPaQ/hqgWKcDal+ZwTtzQvxKAdPsB3WUCBoSKg=="; }; dependencies = [ sources."@yarnpkg/lockfile-1.1.0" @@ -54599,7 +57876,7 @@ in sources."ms-2.0.0" ]; }) - sources."graceful-fs-4.1.11" + sources."graceful-fs-4.1.15" sources."graphlib-2.1.5" sources."has-flag-3.0.0" sources."hasbin-1.2.3" @@ -54724,20 +58001,20 @@ in sources."signal-exit-3.0.2" sources."smart-buffer-1.1.15" sources."snyk-config-2.2.0" - sources."snyk-docker-plugin-1.12.0" - sources."snyk-go-plugin-1.5.2" - sources."snyk-gradle-plugin-2.1.0" - sources."snyk-module-1.8.2" + sources."snyk-docker-plugin-1.12.2" + sources."snyk-go-plugin-1.6.0" + sources."snyk-gradle-plugin-2.1.1" + sources."snyk-module-1.9.1" sources."snyk-mvn-plugin-2.0.0" - (sources."snyk-nodejs-lockfile-parser-1.5.3" // { + (sources."snyk-nodejs-lockfile-parser-1.7.0" // { dependencies = [ sources."lodash-4.17.10" ]; }) sources."snyk-nuget-plugin-1.6.5" sources."snyk-php-plugin-1.5.1" - sources."snyk-policy-1.12.0" - sources."snyk-python-plugin-1.8.2" + sources."snyk-policy-1.13.1" + sources."snyk-python-plugin-1.9.0" sources."snyk-resolve-1.0.1" sources."snyk-resolve-deps-4.0.2" sources."snyk-sbt-plugin-2.0.0" @@ -54826,22 +58103,22 @@ in sources."base64-arraybuffer-0.1.5" sources."base64id-1.0.0" sources."better-assert-1.0.2" - sources."blob-0.0.4" + sources."blob-0.0.5" sources."callsite-1.0.0" sources."component-bind-1.0.0" sources."component-emitter-1.2.1" sources."component-inherit-0.0.3" sources."cookie-0.3.1" sources."debug-3.1.0" - sources."engine.io-3.2.0" + sources."engine.io-3.2.1" sources."engine.io-client-3.2.1" - sources."engine.io-parser-2.1.2" + sources."engine.io-parser-2.1.3" sources."has-binary2-1.0.3" sources."has-cors-1.1.0" sources."indexof-0.0.1" sources."isarray-2.0.1" - sources."mime-db-1.36.0" - sources."mime-types-2.1.20" + sources."mime-db-1.37.0" + sources."mime-types-2.1.21" sources."ms-2.0.0" sources."negotiator-0.6.1" sources."object-component-0.0.3" @@ -55000,11 +58277,11 @@ in sources."boolbase-1.0.0" sources."coa-2.0.1" sources."colors-1.1.2" - sources."css-select-2.0.0" - sources."css-select-base-adapter-0.1.0" + sources."css-select-2.0.2" + sources."css-select-base-adapter-0.1.1" sources."css-tree-1.0.0-alpha.28" sources."css-url-regex-1.1.0" - sources."css-what-2.1.0" + sources."css-what-2.1.2" (sources."csso-3.5.1" // { dependencies = [ sources."css-tree-1.0.0-alpha.29" @@ -55018,7 +58295,7 @@ in }) sources."domelementtype-1.3.0" sources."domutils-1.7.0" - sources."entities-1.1.1" + sources."entities-1.1.2" sources."es-abstract-1.12.0" sources."es-to-primitive-1.2.0" sources."esprima-4.0.1" @@ -55033,7 +58310,7 @@ in sources."mdn-data-1.1.4" sources."minimist-0.0.8" sources."mkdirp-0.5.1" - sources."nth-check-1.0.1" + sources."nth-check-1.0.2" sources."object-keys-1.0.12" sources."object.getownpropertydescriptors-2.0.3" sources."object.values-1.0.4" @@ -55153,7 +58430,7 @@ in sources."collection-visit-1.0.0" sources."color-convert-1.9.3" sources."color-name-1.1.3" - sources."combined-stream-1.0.6" + sources."combined-stream-1.0.7" sources."commander-2.19.0" sources."component-emitter-1.2.1" sources."concat-map-0.0.1" @@ -55239,7 +58516,7 @@ in sources."finalhandler-1.1.0" sources."flatmap-stream-0.1.1" sources."for-in-1.0.2" - sources."form-data-2.3.2" + sources."form-data-2.3.3" sources."formidable-1.2.1" sources."fragment-cache-0.2.1" sources."fresh-0.5.2" @@ -55257,7 +58534,7 @@ in }) sources."global-dirs-0.1.1" sources."got-6.7.1" - sources."graceful-fs-4.1.11" + sources."graceful-fs-4.1.15" (sources."graphlib-2.1.5" // { dependencies = [ sources."lodash-4.17.11" @@ -55332,6 +58609,7 @@ in sources."mkdirp-0.3.0" ]; }) + sources."js-string-escape-1.0.1" sources."js-yaml-3.12.0" sources."json-refs-2.1.7" (sources."json-schema-deref-sync-0.3.4" // { @@ -55386,8 +58664,8 @@ in sources."methods-1.1.2" sources."micromatch-3.1.10" sources."mime-1.4.1" - sources."mime-db-1.36.0" - sources."mime-types-2.1.20" + sources."mime-db-1.37.0" + sources."mime-types-2.1.21" sources."minimatch-3.0.4" sources."minimist-0.0.8" sources."mixin-deep-1.3.1" @@ -55410,7 +58688,7 @@ in sources."nan-2.11.1" sources."nanomatch-1.2.13" sources."native-promise-only-0.8.1" - (sources."nodemon-1.18.4" // { + (sources."nodemon-1.18.6" // { dependencies = [ sources."debug-3.2.6" sources."ms-2.1.1" @@ -55606,7 +58884,7 @@ in sources."supports-color-2.0.0" sources."swagger-converter-0.2.0" sources."swagger-editor-2.10.5" - sources."swagger-test-templates-1.5.0" + sources."swagger-test-templates-1.5.1" (sources."swagger-tools-0.9.16" // { dependencies = [ sources."swagger-converter-0.1.7" @@ -55671,9 +58949,9 @@ in sources."util-deprecate-1.0.2" sources."utils-merge-1.0.1" sources."valid-url-1.0.9" - sources."validator-10.8.0" + sources."validator-10.9.0" sources."which-1.3.1" - sources."widest-line-2.0.0" + sources."widest-line-2.0.1" sources."wordwrap-0.0.3" sources."wrappy-1.0.2" sources."write-file-atomic-2.3.0" @@ -55694,13 +58972,15 @@ in tern = nodeEnv.buildNodePackage { name = "tern"; packageName = "tern"; - version = "0.22.3"; + version = "0.23.0"; src = fetchurl { - url = "https://registry.npmjs.org/tern/-/tern-0.22.3.tgz"; - sha512 = "A2C8GbR6uJWjHUwxtxF14oY1g8oJDEhM+n9ugRowX+jr8JHgNUeOLrYTOi/LV/JK9KHpxnYwyuhnal9YDXeeDQ=="; + url = "https://registry.npmjs.org/tern/-/tern-0.23.0.tgz"; + sha512 = "lST8jq/DougDUADb+vBaufwjqNChwABSJTkWf+5GG4xNVJoR/atEaMe/G7buaVZrpGCy+zoaq1TuycQy8xX+Bg=="; }; dependencies = [ - sources."acorn-5.7.3" + sources."acorn-6.0.4" + sources."acorn-loose-6.0.0" + sources."acorn-walk-6.1.0" sources."balanced-match-1.0.0" sources."brace-expansion-1.1.11" sources."concat-map-0.0.1" @@ -55709,7 +58989,7 @@ in sources."errno-0.1.7" sources."fs.realpath-1.0.0" sources."glob-7.1.3" - sources."graceful-fs-4.1.11" + sources."graceful-fs-4.1.15" sources."inflight-1.0.6" sources."inherits-2.0.3" sources."isarray-1.0.0" @@ -55740,10 +59020,10 @@ in three = nodeEnv.buildNodePackage { name = "three"; packageName = "three"; - version = "0.97.0"; + version = "0.98.0"; src = fetchurl { - url = "https://registry.npmjs.org/three/-/three-0.97.0.tgz"; - sha512 = "ctZF79O1R2aMIDnz9cV5GUIONyFnYvfQKg4+EAwEVaEr1mgy99rglstH6hhRdIThu3SOa4Ns5da/Ee5fTbWc9A=="; + url = "https://registry.npmjs.org/three/-/three-0.98.0.tgz"; + sha512 = "fihjYVjCmQbI03zt1+YCl/m+UrZCcDHFNLexgqBOIdPwnO6PYkQaYUsIbqtvNNse+BiMeu+pQWzZn9/NSnIv6A=="; }; buildInputs = globalBuildInputs; meta = { @@ -55812,16 +59092,12 @@ in ]; }) sources."forever-agent-0.6.1" - (sources."form-data-2.3.2" // { - dependencies = [ - sources."combined-stream-1.0.6" - ]; - }) - sources."fs-extra-7.0.0" + sources."form-data-2.3.3" + sources."fs-extra-7.0.1" sources."getpass-0.1.7" - sources."graceful-fs-4.1.11" + sources."graceful-fs-4.1.15" sources."har-schema-2.0.0" - sources."har-validator-5.0.3" + sources."har-validator-5.1.0" sources."http-signature-1.2.0" sources."humanize-0.0.9" sources."is-typedarray-1.0.0" @@ -55835,23 +59111,30 @@ in sources."keypress-0.2.1" sources."lodash-4.17.11" sources."longjohn-0.2.12" - sources."mime-db-1.36.0" - sources."mime-types-2.1.20" + sources."mime-db-1.37.0" + sources."mime-types-2.1.21" sources."minimist-0.0.10" sources."moment-2.22.2" - (sources."node-appc-0.2.48" // { + (sources."node-appc-0.2.49" // { dependencies = [ - sources."fs-extra-6.0.1" + sources."request-2.88.0" ]; }) - sources."oauth-sign-0.8.2" + sources."oauth-sign-0.9.0" sources."optimist-0.6.1" sources."os-tmpdir-1.0.2" sources."performance-now-2.1.0" sources."pkginfo-0.3.1" + sources."psl-1.1.29" sources."punycode-1.4.1" sources."qs-6.5.2" - sources."request-2.87.0" + (sources."request-2.87.0" // { + dependencies = [ + sources."har-validator-5.0.3" + sources."oauth-sign-0.8.2" + sources."tough-cookie-2.3.4" + ]; + }) sources."rimraf-2.2.8" sources."safe-buffer-5.1.2" sources."safer-buffer-2.1.2" @@ -55859,10 +59142,10 @@ in sources."source-map-0.6.1" sources."source-map-support-0.5.9" sources."sprintf-0.1.5" - sources."sshpk-1.15.1" + sources."sshpk-1.15.2" sources."stack-trace-0.0.10" sources."temp-0.8.3" - sources."tough-cookie-2.3.4" + sources."tough-cookie-2.4.3" sources."tunnel-agent-0.6.0" sources."tweetnacl-0.14.5" sources."uglify-js-3.4.9" @@ -56070,13 +59353,35 @@ in production = true; bypassCache = true; }; + ttf2eot = nodeEnv.buildNodePackage { + name = "ttf2eot"; + packageName = "ttf2eot"; + version = "2.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/ttf2eot/-/ttf2eot-2.0.0.tgz"; + sha1 = "8e6337a585abd1608a0c84958ab483ce69f6654b"; + }; + dependencies = [ + sources."argparse-1.0.10" + sources."microbuffer-1.0.0" + sources."sprintf-js-1.0.3" + ]; + buildInputs = globalBuildInputs; + meta = { + description = "Convert TTF font to EOT"; + homepage = "https://github.com/fontello/ttf2eot#readme"; + license = "MIT"; + }; + production = true; + bypassCache = true; + }; typescript = nodeEnv.buildNodePackage { name = "typescript"; packageName = "typescript"; - version = "3.1.3"; + version = "3.1.6"; src = fetchurl { - url = "https://registry.npmjs.org/typescript/-/typescript-3.1.3.tgz"; - sha512 = "+81MUSyX+BaSo+u2RbozuQk/UWx6hfG0a5gHu4ANEM4sU96XbuIyAB+rWBW1u70c6a5QuZfuYICn3s2UjuHUpA=="; + url = "https://registry.npmjs.org/typescript/-/typescript-3.1.6.tgz"; + sha512 = "tDMYfVtvpb96msS1lDX9MEdHrW4yOuZ4Kdc4Him9oU796XldPYF/t2+uKoX0BBa0hXXwDlqYQbXY5Rzjzc5hBA=="; }; buildInputs = globalBuildInputs; meta = { @@ -56107,7 +59412,7 @@ in sources."array-uniq-1.0.3" sources."asynckit-0.4.0" sources."balanced-match-1.0.0" - sources."bluebird-3.5.2" + sources."bluebird-3.5.3" (sources."boxen-1.3.0" // { dependencies = [ sources."ansi-styles-3.2.1" @@ -56128,7 +59433,7 @@ in sources."color-convert-1.9.3" sources."color-name-1.1.3" sources."columnify-1.5.4" - sources."combined-stream-1.0.6" + sources."combined-stream-1.0.7" sources."concat-map-0.0.1" sources."concat-stream-1.6.2" sources."configstore-3.1.2" @@ -56149,14 +59454,14 @@ in sources."execa-0.7.0" sources."exit-hook-1.1.1" sources."extend-3.0.2" - sources."form-data-2.3.2" + sources."form-data-2.3.3" sources."fs.realpath-1.0.0" sources."function-bind-1.1.1" sources."get-stream-3.0.0" sources."glob-7.1.3" sources."global-dirs-0.1.1" sources."got-6.7.1" - sources."graceful-fs-4.1.11" + sources."graceful-fs-4.1.15" sources."has-1.0.3" sources."has-ansi-2.0.0" sources."has-flag-3.0.0" @@ -56199,8 +59504,8 @@ in sources."make-dir-1.3.0" sources."make-error-1.3.5" sources."make-error-cause-1.2.2" - sources."mime-db-1.36.0" - sources."mime-types-2.1.20" + sources."mime-db-1.37.0" + sources."mime-types-2.1.21" sources."minimatch-3.0.4" sources."minimist-1.2.0" (sources."mkdirp-0.5.1" // { @@ -56286,7 +59591,7 @@ in sources."util-deprecate-1.0.2" sources."wcwidth-1.0.1" sources."which-1.3.1" - sources."widest-line-2.0.0" + sources."widest-line-2.0.1" sources."wordwrap-1.0.0" sources."wrappy-1.0.2" sources."write-file-atomic-2.3.0" @@ -56328,10 +59633,10 @@ in ungit = nodeEnv.buildNodePackage { name = "ungit"; packageName = "ungit"; - version = "1.4.34"; + version = "1.4.36"; src = fetchurl { - url = "https://registry.npmjs.org/ungit/-/ungit-1.4.34.tgz"; - sha512 = "7sgDDNaWakL7tzp5NwENWHV0SekB6LzcW99nVv0CLthggQnw7wWDnSFAz9iHbBINNj14Sh3gscO7nd73qBtlgA=="; + url = "https://registry.npmjs.org/ungit/-/ungit-1.4.36.tgz"; + sha512 = "Tpr9qHQZX/e4Qhz4dg1c5Y/jOs911E2MengusvNxO9+kxaw3ua/j+U0FCcPdg4vTDFtEydCGli3kJCoiEbK48w=="; }; dependencies = [ sources."abbrev-1.1.1" @@ -56362,8 +59667,8 @@ in sources."base64id-1.0.0" sources."bcrypt-pbkdf-1.0.2" sources."better-assert-1.0.2" - sources."blob-0.0.4" - sources."bluebird-3.5.2" + sources."blob-0.0.5" + sources."bluebird-3.5.3" sources."blueimp-md5-2.10.0" sources."body-parser-1.18.3" sources."brace-expansion-1.1.11" @@ -56372,7 +59677,7 @@ in sources."builtins-1.0.3" sources."bytes-3.0.0" sources."callsite-1.0.0" - sources."camelcase-4.1.0" + sources."camelcase-5.0.0" sources."caseless-0.12.0" (sources."cliui-4.1.0" // { dependencies = [ @@ -56416,7 +59721,7 @@ in sources."cycle-1.0.3" sources."dashdash-1.14.1" sources."debug-2.6.9" - sources."decamelize-2.0.0" + sources."decamelize-1.2.0" sources."deep-extend-0.6.0" sources."delayed-stream-0.0.5" sources."delegates-1.0.0" @@ -56434,7 +59739,7 @@ in sources."editions-2.0.2" sources."ee-first-1.1.1" sources."encodeurl-1.0.2" - (sources."engine.io-3.2.0" // { + (sources."engine.io-3.2.1" // { dependencies = [ sources."debug-3.1.0" ]; @@ -56445,7 +59750,7 @@ in sources."debug-3.1.0" ]; }) - sources."engine.io-parser-2.1.2" + sources."engine.io-parser-2.1.3" (sources."errlop-1.0.3" // { dependencies = [ sources."editions-1.3.4" @@ -56493,7 +59798,7 @@ in sources."getmac-1.4.6" sources."getpass-0.1.7" sources."glob-7.1.3" - sources."graceful-fs-4.1.11" + sources."graceful-fs-4.1.15" sources."har-schema-2.0.0" sources."har-validator-5.1.0" (sources."has-binary2-1.0.3" // { @@ -56513,7 +59818,7 @@ in sources."http-errors-1.6.3" sources."http-signature-1.2.0" sources."iconv-lite-0.4.23" - sources."ignore-5.0.2" + sources."ignore-5.0.4" sources."indexof-0.0.1" sources."inflight-1.0.6" sources."inherits-2.0.3" @@ -56562,8 +59867,8 @@ in sources."merge-descriptors-1.0.1" sources."methods-1.1.2" sources."mime-1.4.1" - sources."mime-db-1.36.0" - sources."mime-types-2.1.20" + sources."mime-db-1.37.0" + sources."mime-types-2.1.21" sources."mimic-fn-1.2.0" sources."minimatch-3.0.4" sources."minimist-0.0.8" @@ -56634,11 +59939,7 @@ in sources."combined-stream-1.0.7" sources."delayed-stream-1.0.0" sources."extend-3.0.2" - (sources."form-data-2.3.2" // { - dependencies = [ - sources."combined-stream-1.0.6" - ]; - }) + sources."form-data-2.3.3" ]; }) sources."require-directory-2.1.1" @@ -56685,8 +59986,8 @@ in sources."spdx-correct-3.0.2" sources."spdx-exceptions-2.2.0" sources."spdx-expression-parse-3.0.0" - sources."spdx-license-ids-3.0.1" - sources."sshpk-1.15.1" + sources."spdx-license-ids-3.0.2" + sources."sshpk-1.15.2" sources."ssri-5.3.0" sources."stack-trace-0.0.10" sources."statuses-1.5.0" @@ -56697,12 +59998,12 @@ in sources."strip-json-comments-2.0.1" (sources."superagent-4.0.0-beta.5" // { dependencies = [ - sources."combined-stream-1.0.6" + sources."combined-stream-1.0.7" sources."component-emitter-1.2.1" sources."cookiejar-2.1.2" sources."debug-4.1.0" sources."delayed-stream-1.0.0" - sources."form-data-2.3.2" + sources."form-data-2.3.3" sources."formidable-1.2.1" sources."mime-2.3.1" sources."ms-2.1.1" @@ -56746,10 +60047,9 @@ in sources."wrappy-1.0.2" sources."ws-3.3.3" sources."xmlhttprequest-ssl-1.5.5" - sources."xregexp-4.0.0" sources."y18n-4.0.0" sources."yallist-2.1.2" - (sources."yargs-12.0.2" // { + (sources."yargs-12.0.4" // { dependencies = [ sources."ansi-regex-3.0.0" sources."is-fullwidth-code-point-2.0.0" @@ -56757,7 +60057,7 @@ in sources."strip-ansi-4.0.0" ]; }) - sources."yargs-parser-10.1.0" + sources."yargs-parser-11.1.0" sources."yeast-0.1.2" ]; buildInputs = globalBuildInputs; @@ -56804,7 +60104,7 @@ in sources."base64-js-0.0.8" sources."bcrypt-pbkdf-1.0.2" sources."bl-1.2.2" - sources."bluebird-3.5.2" + sources."bluebird-3.5.3" sources."brace-expansion-1.1.11" sources."buffer-3.6.0" sources."buffer-alloc-1.2.0" @@ -56871,11 +60171,7 @@ in sources."filename-reserved-regex-2.0.0" sources."filenamify-2.1.0" sources."forever-agent-0.6.1" - (sources."form-data-2.3.2" // { - dependencies = [ - sources."combined-stream-1.0.6" - ]; - }) + sources."form-data-2.3.3" sources."fs-constants-1.0.0" sources."fs-extra-0.26.7" sources."fs.realpath-1.0.0" @@ -56885,7 +60181,7 @@ in sources."git-clone-0.1.0" sources."glob-7.1.3" sources."got-6.7.1" - sources."graceful-fs-4.1.11" + sources."graceful-fs-4.1.15" sources."graceful-readlink-1.0.1" sources."gray-matter-2.1.1" sources."handlebars-4.0.12" @@ -56946,8 +60242,8 @@ in sources."supports-color-2.0.0" ]; }) - sources."mime-db-1.36.0" - sources."mime-types-2.1.20" + sources."mime-db-1.37.0" + sources."mime-types-2.1.21" sources."mimic-fn-1.2.0" sources."minimatch-3.0.4" sources."minimist-0.0.8" @@ -56998,7 +60294,7 @@ in sources."signal-exit-3.0.2" sources."source-map-0.6.1" sources."sprintf-js-1.0.3" - sources."sshpk-1.15.1" + sources."sshpk-1.15.2" sources."stat-mode-0.2.2" sources."string-width-2.1.1" sources."string_decoder-1.1.1" @@ -57057,19 +60353,18 @@ in "@vue/cli" = nodeEnv.buildNodePackage { name = "_at_vue_slash_cli"; packageName = "@vue/cli"; - version = "3.0.5"; + version = "3.1.1"; src = fetchurl { - url = "https://registry.npmjs.org/@vue/cli/-/cli-3.0.5.tgz"; - sha512 = "wNwK6oosaMY5gCmzONatVAVLf8dMmpGqxoT1Z6ne0aBRg6gOUZ+XrLN6MiF34tlETvQ/XhHUC5d+YVWoBVlllQ=="; + url = "https://registry.npmjs.org/@vue/cli/-/cli-3.1.1.tgz"; + sha512 = "FUL6sBmg50/1Y5GtOxMeFniqkpDCXBm2rlVgL+64eN+N9qIOKMZDAtfTy/F/d3TUn9Bc1lvPO6/6Xm9m68TnEg=="; }; dependencies = [ sources."@akryum/winattr-3.0.0" sources."@apollographql/apollo-upload-server-5.0.3" - sources."@apollographql/graphql-playground-html-1.6.0" - sources."@babel/runtime-7.1.2" - sources."@babel/runtime-corejs2-7.1.2" + sources."@apollographql/graphql-playground-html-1.6.4" + sources."@babel/runtime-corejs2-7.1.5" sources."@mrmlnc/readdir-enhanced-2.2.1" - sources."@nodelib/fs.stat-1.1.2" + sources."@nodelib/fs.stat-1.1.3" sources."@protobufjs/aspromise-1.1.2" sources."@protobufjs/base64-1.1.2" sources."@protobufjs/codegen-2.0.4" @@ -57081,7 +60376,7 @@ in sources."@protobufjs/pool-1.1.0" sources."@protobufjs/utf8-1.1.0" sources."@types/accepts-1.3.5" - sources."@types/async-2.0.49" + sources."@types/async-2.0.50" sources."@types/body-parser-1.17.0" sources."@types/connect-3.4.32" sources."@types/cors-2.8.4" @@ -57090,33 +60385,35 @@ in sources."@types/express-serve-static-core-4.16.0" sources."@types/long-4.0.0" sources."@types/mime-2.0.0" - sources."@types/node-10.11.7" + sources."@types/node-10.12.5" sources."@types/range-parser-1.2.2" sources."@types/serve-static-1.13.2" - sources."@types/ws-5.1.2" + sources."@types/ws-6.0.1" sources."@types/zen-observable-0.8.0" - sources."@vue/cli-shared-utils-3.0.5" - (sources."@vue/cli-ui-3.0.5" // { + sources."@vue/cli-shared-utils-3.1.1" + (sources."@vue/cli-ui-3.1.1" // { dependencies = [ sources."clone-2.1.2" ]; }) - sources."@vue/cli-ui-addon-webpack-3.0.5" + sources."@vue/cli-ui-addon-webpack-3.1.1" + sources."@vue/cli-ui-addon-widgets-3.1.1" sources."abbrev-1.1.1" sources."accepts-1.3.5" + sources."aggregate-error-1.0.0" sources."ajv-5.5.2" sources."ansi-align-2.0.0" sources."ansi-escapes-3.1.0" sources."ansi-regex-3.0.0" sources."ansi-styles-3.2.1" sources."anymatch-2.0.0" - sources."apollo-cache-1.1.17" - sources."apollo-cache-control-0.2.5" - sources."apollo-cache-inmemory-1.3.5" - sources."apollo-client-2.4.2" - sources."apollo-datasource-0.1.3" - sources."apollo-engine-reporting-0.0.6" - sources."apollo-engine-reporting-protobuf-0.0.1" + sources."apollo-cache-1.1.20" + sources."apollo-cache-control-0.3.0" + sources."apollo-cache-inmemory-1.3.9" + sources."apollo-client-2.4.5" + sources."apollo-datasource-0.2.0" + sources."apollo-engine-reporting-0.1.0" + sources."apollo-engine-reporting-protobuf-0.1.0" sources."apollo-link-1.2.3" sources."apollo-link-context-1.0.9" sources."apollo-link-dedup-1.0.10" @@ -57124,22 +60421,15 @@ in sources."apollo-link-persisted-queries-0.2.1" sources."apollo-link-state-0.4.2" sources."apollo-link-ws-1.0.9" - sources."apollo-server-caching-0.1.2" - (sources."apollo-server-core-2.1.0" // { - dependencies = [ - sources."graphql-subscriptions-0.5.8" - ]; - }) - sources."apollo-server-env-2.0.3" - sources."apollo-server-errors-2.0.2" - (sources."apollo-server-express-2.1.0" // { - dependencies = [ - sources."graphql-subscriptions-0.5.8" - ]; - }) - sources."apollo-tracing-0.2.5" - sources."apollo-upload-client-8.1.0" - sources."apollo-utilities-1.0.21" + sources."apollo-server-caching-0.2.0" + sources."apollo-server-core-2.2.0" + sources."apollo-server-env-2.2.0" + sources."apollo-server-errors-2.2.0" + sources."apollo-server-express-2.2.0" + sources."apollo-server-plugin-base-0.1.0" + sources."apollo-tracing-0.3.0" + sources."apollo-upload-client-9.1.0" + sources."apollo-utilities-1.0.25" sources."argparse-1.0.10" sources."arr-diff-4.0.0" sources."arr-flatten-1.1.0" @@ -57174,13 +60464,7 @@ in sources."base64-js-0.0.8" sources."bcrypt-pbkdf-1.0.2" sources."binary-extensions-1.12.0" - (sources."bl-1.2.2" // { - dependencies = [ - sources."isarray-1.0.0" - sources."readable-stream-2.3.6" - sources."string_decoder-1.1.1" - ]; - }) + sources."bl-1.2.2" (sources."body-parser-1.18.3" // { dependencies = [ sources."debug-2.6.9" @@ -57189,18 +60473,20 @@ in sources."boxen-1.3.0" sources."brace-expansion-1.1.11" sources."braces-2.3.2" - (sources."buffer-3.6.0" // { - dependencies = [ - sources."isarray-1.0.0" - ]; - }) + sources."buffer-3.6.0" sources."buffer-alloc-1.2.0" sources."buffer-alloc-unsafe-1.1.0" sources."buffer-crc32-0.2.13" sources."buffer-fill-1.0.0" sources."buffer-from-1.1.1" sources."builtins-1.0.3" - sources."busboy-0.2.14" + (sources."busboy-0.2.14" // { + dependencies = [ + sources."isarray-0.0.1" + sources."readable-stream-1.1.14" + sources."string_decoder-0.10.31" + ]; + }) sources."bytes-3.0.0" sources."cache-base-1.0.1" sources."call-me-maybe-1.0.1" @@ -57229,6 +60515,7 @@ in sources."kind-of-5.1.0" ]; }) + sources."clean-stack-1.3.0" sources."cli-boxes-1.0.0" sources."cli-cursor-2.1.0" sources."cli-spinners-1.3.1" @@ -57253,10 +60540,12 @@ in sources."copy-descriptor-0.1.1" sources."core-js-2.5.7" sources."core-util-is-1.0.2" - sources."cors-2.8.4" + sources."cors-2.8.5" sources."create-error-class-3.0.2" - sources."cross-spawn-5.1.0" + sources."cross-spawn-6.0.5" + sources."cross-spawn-async-2.2.5" sources."crypto-random-string-1.0.0" + sources."csv-parser-1.12.1" sources."dashdash-1.14.1" (sources."debug-3.2.6" // { dependencies = [ @@ -57293,7 +60582,13 @@ in sources."depd-1.1.2" sources."deprecated-decorator-0.1.6" sources."destroy-1.0.4" - sources."dicer-0.2.5" + (sources."dicer-0.2.5" // { + dependencies = [ + sources."isarray-0.0.1" + sources."readable-stream-1.1.14" + sources."string_decoder-0.10.31" + ]; + }) sources."diff-3.5.0" sources."dir-glob-2.0.0" sources."dot-prop-4.2.0" @@ -57311,6 +60606,7 @@ in sources."ejs-2.6.1" sources."encodeurl-1.0.2" sources."end-of-stream-1.4.1" + sources."entities-1.1.2" sources."es-abstract-1.12.0" sources."es-to-primitive-1.2.0" sources."escape-html-1.0.3" @@ -57322,9 +60618,9 @@ in sources."event-stream-3.3.6" sources."eventemitter3-3.1.0" sources."exec-sh-0.2.2" - (sources."execa-0.10.0" // { + (sources."execa-1.0.0" // { dependencies = [ - sources."cross-spawn-6.0.5" + sources."get-stream-4.1.0" ]; }) (sources."expand-brackets-2.1.4" // { @@ -57365,12 +60661,11 @@ in sources."define-property-1.0.0" ]; }) - sources."extract-files-3.1.0" + sources."extract-files-4.1.0" sources."extsprintf-1.3.0" sources."fast-deep-equal-1.1.0" sources."fast-glob-2.2.3" sources."fast-json-stable-stringify-2.0.0" - sources."fclone-1.0.11" sources."fd-slicer-1.1.0" sources."figures-2.0.0" sources."file-type-5.2.0" @@ -57383,18 +60678,20 @@ in sources."statuses-1.4.0" ]; }) - sources."flatmap-stream-0.1.1" - sources."for-in-1.0.2" - sources."forever-agent-0.6.1" - (sources."form-data-2.3.2" // { + (sources."fkill-5.3.0" // { dependencies = [ - sources."combined-stream-1.0.6" + sources."execa-0.10.0" ]; }) + sources."flatmap-stream-0.1.1" + sources."for-in-1.0.2" + sources."forever-agent-0.6.1" + sources."form-data-2.3.3" sources."forwarded-0.1.2" sources."fragment-cache-0.2.1" sources."fresh-0.5.2" sources."from-0.1.7" + sources."from2-2.3.0" sources."fs-constants-1.0.0" sources."fs-exists-sync-0.1.0" sources."fs-extra-6.0.1" @@ -57402,6 +60699,8 @@ in sources."fsevents-1.2.4" sources."fswin-2.17.1227" sources."function-bind-1.1.1" + sources."generate-function-1.1.0" + sources."generate-object-property-1.2.0" sources."get-proxy-2.1.0" sources."get-stream-3.0.0" sources."get-value-2.0.6" @@ -57423,14 +60722,14 @@ in }) sources."good-listener-1.2.2" sources."got-6.7.1" - sources."graceful-fs-4.1.11" + sources."graceful-fs-4.1.15" sources."graceful-readlink-1.0.1" - sources."graphql-0.13.2" - sources."graphql-anywhere-4.1.19" - sources."graphql-extensions-0.2.1" + sources."graphql-14.0.2" + sources."graphql-anywhere-4.1.22" + sources."graphql-extensions-0.3.0" sources."graphql-subscriptions-1.0.0" sources."graphql-tag-2.10.0" - sources."graphql-tools-3.1.1" + sources."graphql-tools-4.0.3" sources."graphql-type-json-0.2.1" sources."growly-1.3.0" sources."har-schema-2.0.0" @@ -57455,14 +60754,16 @@ in sources."ieee754-1.1.12" sources."ignore-3.3.10" sources."ignore-by-default-1.0.1" - sources."immutable-tuple-0.4.8" + sources."immutable-tuple-0.4.9" sources."import-global-0.1.0" sources."import-lazy-2.1.0" sources."imurmurhash-0.1.4" + sources."indent-string-3.2.0" sources."inflight-1.0.6" sources."inherits-2.0.3" sources."ini-1.3.5" sources."inquirer-6.2.0" + sources."into-stream-2.0.1" sources."ipaddr.js-1.8.0" sources."is-accessor-descriptor-1.0.0" sources."is-binary-path-1.0.1" @@ -57489,6 +60790,7 @@ in sources."is-path-inside-1.0.1" sources."is-plain-object-2.0.4" sources."is-promise-2.1.0" + sources."is-property-1.0.2" sources."is-redirect-1.0.0" sources."is-regex-1.0.4" sources."is-retry-allowed-1.1.0" @@ -57497,9 +60799,9 @@ in sources."is-typedarray-1.0.0" sources."is-windows-1.0.2" sources."is-wsl-1.1.0" - sources."isarray-0.0.1" + sources."isarray-1.0.0" sources."isbinaryfile-3.0.3" - sources."isemail-3.1.3" + sources."isemail-3.2.0" sources."isexe-2.0.0" sources."isobject-3.0.1" sources."isstream-0.1.2" @@ -57513,6 +60815,7 @@ in sources."jsbn-0.1.1" sources."json-schema-0.2.3" sources."json-schema-traverse-0.3.1" + sources."json-stable-stringify-1.0.1" sources."json-stringify-safe-5.0.1" sources."jsonfile-4.0.0" sources."jsonify-0.0.0" @@ -57536,7 +60839,7 @@ in sources."map-stream-0.0.7" sources."map-visit-1.0.0" sources."media-typer-0.3.0" - sources."merge-1.2.0" + sources."merge-1.2.1" sources."merge-descriptors-1.0.1" sources."merge2-1.2.3" sources."methods-1.1.2" @@ -57547,8 +60850,8 @@ in ]; }) sources."mime-1.4.1" - sources."mime-db-1.36.0" - sources."mime-types-2.1.20" + sources."mime-db-1.37.0" + sources."mime-types-2.1.21" sources."mimic-fn-1.2.0" sources."minimalistic-assert-1.0.1" sources."minimatch-3.0.4" @@ -57566,19 +60869,25 @@ in sources."ms-2.0.0" sources."mute-stream-0.0.7" sources."nan-2.11.1" - sources."nanoid-1.3.0" + sources."nanoid-2.0.0" (sources."nanomatch-1.2.13" // { dependencies = [ sources."extend-shallow-3.0.2" sources."is-extendable-1.0.1" ]; }) + sources."ndjson-1.5.0" + (sources."neat-csv-2.1.0" // { + dependencies = [ + sources."get-stream-2.3.1" + ]; + }) sources."negotiator-0.6.1" sources."nice-try-1.0.5" - sources."node-fetch-2.2.0" + sources."node-fetch-2.2.1" sources."node-ipc-9.1.1" - sources."node-notifier-5.2.1" - sources."nodemon-1.18.4" + sources."node-notifier-5.3.0" + sources."nodemon-1.18.6" sources."nopt-1.0.10" sources."normalize-path-2.1.1" sources."npm-conf-1.1.3" @@ -57607,7 +60916,7 @@ in sources."once-1.4.0" sources."onetime-2.0.1" sources."opn-5.4.0" - sources."optimism-0.6.6" + sources."optimism-0.6.8" sources."ora-2.1.0" sources."os-tmpdir-1.0.2" sources."p-finally-1.0.0" @@ -57626,10 +60935,16 @@ in sources."pause-stream-0.0.11" sources."pend-1.2.0" sources."performance-now-2.1.0" + (sources."pid-from-port-1.1.3" // { + dependencies = [ + sources."cross-spawn-5.1.0" + sources."execa-0.9.0" + ]; + }) sources."pify-3.0.0" sources."pinkie-2.0.4" sources."pinkie-promise-2.0.1" - (sources."portfinder-1.0.17" // { + (sources."portfinder-1.0.19" // { dependencies = [ sources."debug-2.6.9" ]; @@ -57638,27 +60953,24 @@ in sources."prepend-http-1.0.4" sources."prismjs-1.15.0" sources."private-0.1.8" + sources."process-exists-3.1.0" sources."process-nextick-args-2.0.0" sources."proto-list-1.2.4" sources."protobufjs-6.8.8" sources."proxy-addr-2.0.4" + sources."ps-list-4.1.0" sources."ps-tree-1.1.0" sources."pseudomap-1.0.2" sources."psl-1.1.29" sources."pstree.remy-1.1.0" + sources."pump-3.0.0" sources."punycode-2.1.1" sources."qs-6.5.2" sources."range-parser-1.2.0" sources."raw-body-2.3.3" sources."rc-1.2.8" - sources."readable-stream-1.1.14" - (sources."readdirp-2.2.1" // { - dependencies = [ - sources."isarray-1.0.0" - sources."readable-stream-2.3.6" - sources."string_decoder-1.1.1" - ]; - }) + sources."readable-stream-2.3.6" + sources."readdirp-2.2.1" (sources."recast-0.15.5" // { dependencies = [ sources."source-map-0.6.1" @@ -57685,11 +60997,14 @@ in sources."ret-0.1.15" sources."retry-0.12.0" sources."rimraf-2.6.2" + sources."rss-parser-3.5.3" sources."run-async-2.3.0" sources."rxjs-6.3.3" sources."safe-buffer-5.1.2" sources."safe-regex-1.1.0" sources."safer-buffer-2.1.2" + sources."sax-1.2.4" + sources."sec-1.0.0" (sources."seek-bzip-1.0.5" // { dependencies = [ sources."commander-2.8.1" @@ -57711,7 +61026,7 @@ in sources."shebang-regex-1.0.0" sources."shell-quote-1.6.1" sources."shellwords-0.1.1" - sources."shortid-2.2.13" + sources."shortid-2.2.14" sources."signal-exit-3.0.2" sources."slash-2.0.0" (sources."snapdragon-0.8.2" // { @@ -57757,8 +61072,9 @@ in sources."is-extendable-1.0.1" ]; }) + sources."split2-2.2.0" sources."sprintf-js-1.0.3" - sources."sshpk-1.15.1" + sources."sshpk-1.15.2" (sources."static-extend-0.1.2" // { dependencies = [ sources."define-property-0.2.5" @@ -57783,29 +61099,39 @@ in sources."streamsearch-0.1.2" sources."string-width-2.1.1" sources."string.prototype.padstart-3.0.0" - sources."string_decoder-0.10.31" + sources."string_decoder-1.1.1" sources."strip-ansi-4.0.0" sources."strip-dirs-2.1.0" sources."strip-eof-1.0.0" sources."strip-json-comments-2.0.1" sources."strip-outer-1.0.1" - sources."subscriptions-transport-ws-0.9.15" + (sources."subscriptions-transport-ws-0.9.15" // { + dependencies = [ + sources."ws-5.2.2" + ]; + }) sources."supports-color-5.5.0" sources."symbol-observable-1.2.0" - (sources."tar-stream-1.6.2" // { + sources."tar-stream-1.6.2" + (sources."taskkill-2.0.0" // { dependencies = [ - sources."isarray-1.0.0" - sources."readable-stream-2.3.6" - sources."string_decoder-1.1.1" + sources."execa-0.1.1" + ]; + }) + (sources."tasklist-3.1.1" // { + dependencies = [ + sources."pify-2.3.0" ]; }) (sources."term-size-1.2.0" // { dependencies = [ + sources."cross-spawn-5.1.0" sources."execa-0.7.0" ]; }) sources."terminate-2.1.0" sources."through-2.3.8" + sources."through2-2.0.5" sources."timed-out-4.0.1" sources."tiny-emitter-2.0.2" sources."tmp-0.0.33" @@ -57822,7 +61148,11 @@ in ]; }) sources."to-regex-range-2.1.1" - sources."topo-3.0.0" + (sources."topo-3.0.3" // { + dependencies = [ + sources."hoek-6.0.2" + ]; + }) sources."touch-3.1.0" (sources."tough-cookie-2.4.3" // { dependencies = [ @@ -57857,7 +61187,6 @@ in ]; }) sources."has-values-0.1.4" - sources."isarray-1.0.0" ]; }) sources."unzip-response-2.0.1" @@ -57874,15 +61203,17 @@ in sources."validate-npm-package-name-3.0.0" sources."vary-1.1.2" sources."verror-1.10.0" - sources."vue-cli-plugin-apollo-0.16.6" + sources."vue-cli-plugin-apollo-0.17.4" sources."watch-1.0.2" sources."wcwidth-1.0.1" sources."which-1.3.1" - sources."widest-line-2.0.0" + sources."widest-line-2.0.1" sources."wrappy-1.0.2" sources."write-file-atomic-2.3.0" - sources."ws-5.2.2" + sources."ws-6.1.0" sources."xdg-basedir-3.0.0" + sources."xml2js-0.4.19" + sources."xmlbuilder-9.0.7" sources."xtend-4.0.1" sources."yallist-2.1.2" (sources."yaml-front-matter-3.4.1" // { @@ -57892,7 +61223,7 @@ in }) sources."yauzl-2.10.0" sources."yn-2.0.0" - sources."zen-observable-0.8.9" + sources."zen-observable-0.8.11" sources."zen-observable-ts-0.8.10" ]; buildInputs = globalBuildInputs; @@ -57907,30 +61238,30 @@ in "@webassemblyjs/cli" = nodeEnv.buildNodePackage { name = "_at_webassemblyjs_slash_cli"; packageName = "@webassemblyjs/cli"; - version = "1.7.8"; + version = "1.7.11"; src = fetchurl { - url = "https://registry.npmjs.org/@webassemblyjs/cli/-/cli-1.7.8.tgz"; - sha512 = "/zEE5vL2lVlZVv3XYLo6+yeEU5pqi8AByBWBVYSuPSRBu0bY9cTCRU4exS/Jd7bdbF9I3s1Moa1FRG1wCQErfA=="; + url = "https://registry.npmjs.org/@webassemblyjs/cli/-/cli-1.7.11.tgz"; + sha512 = "j2KPAIyvXa6fuOr5bQEEb8UHF7WCbEguia5BMJotgxNo37LA/1c4Do/rxFornYKkcmf5IOLjDr197SMUlys3+g=="; }; dependencies = [ - sources."@webassemblyjs/ast-1.7.8" - sources."@webassemblyjs/floating-point-hex-parser-1.7.8" - sources."@webassemblyjs/helper-api-error-1.7.8" - sources."@webassemblyjs/helper-code-frame-1.7.8" - sources."@webassemblyjs/helper-flaten-ast-1.7.8" - sources."@webassemblyjs/helper-fsm-1.7.8" - sources."@webassemblyjs/helper-module-context-1.7.8" - sources."@webassemblyjs/helper-wasm-bytecode-1.7.8" - sources."@webassemblyjs/ieee754-1.7.8" - sources."@webassemblyjs/leb128-1.7.8" - sources."@webassemblyjs/utf8-1.7.8" - sources."@webassemblyjs/validation-1.7.8" - sources."@webassemblyjs/wasm-parser-1.7.8" - sources."@webassemblyjs/wast-parser-1.7.8" - sources."@webassemblyjs/wast-printer-1.7.8" + sources."@webassemblyjs/ast-1.7.11" + sources."@webassemblyjs/floating-point-hex-parser-1.7.11" + sources."@webassemblyjs/helper-api-error-1.7.11" + sources."@webassemblyjs/helper-code-frame-1.7.11" + sources."@webassemblyjs/helper-flaten-ast-1.7.11" + sources."@webassemblyjs/helper-fsm-1.7.11" + sources."@webassemblyjs/helper-module-context-1.7.11" + sources."@webassemblyjs/helper-wasm-bytecode-1.7.11" + sources."@webassemblyjs/ieee754-1.7.11" + sources."@webassemblyjs/leb128-1.7.11" + sources."@webassemblyjs/utf8-1.7.11" + sources."@webassemblyjs/validation-1.7.11" + sources."@webassemblyjs/wasm-parser-1.7.11" + sources."@webassemblyjs/wast-parser-1.7.11" + sources."@webassemblyjs/wast-printer-1.7.11" sources."@xtuc/ieee754-1.2.0" sources."@xtuc/long-4.2.1" - sources."webassemblyjs-1.7.8" + sources."webassemblyjs-1.7.11" ]; buildInputs = globalBuildInputs; meta = { @@ -57943,30 +61274,30 @@ in "@webassemblyjs/repl" = nodeEnv.buildNodePackage { name = "_at_webassemblyjs_slash_repl"; packageName = "@webassemblyjs/repl"; - version = "1.7.8"; + version = "1.7.11"; src = fetchurl { - url = "https://registry.npmjs.org/@webassemblyjs/repl/-/repl-1.7.8.tgz"; - sha512 = "IClmDKT+XgTiJ3lNaaXbHBAt2LqabugJmsabtF8TIlulG5Y5NEOOeJGjm56/rmwuW3/ul/zvaLQ1pFpU3WEIXg=="; + url = "https://registry.npmjs.org/@webassemblyjs/repl/-/repl-1.7.11.tgz"; + sha512 = "rU4ikGGLw6rXQtYLzAvy3GDGpf/0FhKLmVUc3uQJbMQwDvW6FT8kp7sUiZYCwr/UECUurjj2fnGu4FDuIi2Iqg=="; }; dependencies = [ - sources."@webassemblyjs/ast-1.7.8" - sources."@webassemblyjs/floating-point-hex-parser-1.7.8" - sources."@webassemblyjs/helper-api-error-1.7.8" - sources."@webassemblyjs/helper-code-frame-1.7.8" - sources."@webassemblyjs/helper-flaten-ast-1.7.8" - sources."@webassemblyjs/helper-fsm-1.7.8" - sources."@webassemblyjs/helper-module-context-1.7.8" - sources."@webassemblyjs/helper-wasm-bytecode-1.7.8" - sources."@webassemblyjs/ieee754-1.7.8" - sources."@webassemblyjs/leb128-1.7.8" - sources."@webassemblyjs/utf8-1.7.8" - sources."@webassemblyjs/validation-1.7.8" - sources."@webassemblyjs/wasm-parser-1.7.8" - sources."@webassemblyjs/wast-parser-1.7.8" - sources."@webassemblyjs/wast-printer-1.7.8" + sources."@webassemblyjs/ast-1.7.11" + sources."@webassemblyjs/floating-point-hex-parser-1.7.11" + sources."@webassemblyjs/helper-api-error-1.7.11" + sources."@webassemblyjs/helper-code-frame-1.7.11" + sources."@webassemblyjs/helper-flaten-ast-1.7.11" + sources."@webassemblyjs/helper-fsm-1.7.11" + sources."@webassemblyjs/helper-module-context-1.7.11" + sources."@webassemblyjs/helper-wasm-bytecode-1.7.11" + sources."@webassemblyjs/ieee754-1.7.11" + sources."@webassemblyjs/leb128-1.7.11" + sources."@webassemblyjs/utf8-1.7.11" + sources."@webassemblyjs/validation-1.7.11" + sources."@webassemblyjs/wasm-parser-1.7.11" + sources."@webassemblyjs/wast-parser-1.7.11" + sources."@webassemblyjs/wast-printer-1.7.11" sources."@xtuc/ieee754-1.2.0" sources."@xtuc/long-4.2.1" - sources."webassemblyjs-1.7.8" + sources."webassemblyjs-1.7.11" ]; buildInputs = globalBuildInputs; meta = { @@ -57979,28 +61310,28 @@ in "@webassemblyjs/wasm-strip" = nodeEnv.buildNodePackage { name = "_at_webassemblyjs_slash_wasm-strip"; packageName = "@webassemblyjs/wasm-strip"; - version = "1.7.8"; + version = "1.7.11"; src = fetchurl { - url = "https://registry.npmjs.org/@webassemblyjs/wasm-strip/-/wasm-strip-1.7.8.tgz"; - sha512 = "ZhPzbEX3UKaLjJ7hjPVjNG3tNjiD7B8eriTR11yrctdyD5vAOVoyrUEsBPX0WadxDOzOsGZmSbFD1SHBjJT8jQ=="; + url = "https://registry.npmjs.org/@webassemblyjs/wasm-strip/-/wasm-strip-1.7.11.tgz"; + sha512 = "mHlWMZuNz/Or8GHH38HhMQ7O4m9N4XpVjL3I+oQ6emVyJqHvvgybn76lTaI8mKaEh3e4EmaUeIC9gknEhdaJVA=="; }; dependencies = [ - sources."@webassemblyjs/ast-1.7.8" - sources."@webassemblyjs/floating-point-hex-parser-1.7.8" - sources."@webassemblyjs/helper-api-error-1.7.8" - sources."@webassemblyjs/helper-buffer-1.7.8" - sources."@webassemblyjs/helper-code-frame-1.7.8" - sources."@webassemblyjs/helper-fsm-1.7.8" - sources."@webassemblyjs/helper-module-context-1.7.8" - sources."@webassemblyjs/helper-wasm-bytecode-1.7.8" - sources."@webassemblyjs/helper-wasm-section-1.7.8" - sources."@webassemblyjs/ieee754-1.7.8" - sources."@webassemblyjs/leb128-1.7.8" - sources."@webassemblyjs/utf8-1.7.8" - sources."@webassemblyjs/wasm-gen-1.7.8" - sources."@webassemblyjs/wasm-parser-1.7.8" - sources."@webassemblyjs/wast-parser-1.7.8" - sources."@webassemblyjs/wast-printer-1.7.8" + sources."@webassemblyjs/ast-1.7.11" + sources."@webassemblyjs/floating-point-hex-parser-1.7.11" + sources."@webassemblyjs/helper-api-error-1.7.11" + sources."@webassemblyjs/helper-buffer-1.7.11" + sources."@webassemblyjs/helper-code-frame-1.7.11" + sources."@webassemblyjs/helper-fsm-1.7.11" + sources."@webassemblyjs/helper-module-context-1.7.11" + sources."@webassemblyjs/helper-wasm-bytecode-1.7.11" + sources."@webassemblyjs/helper-wasm-section-1.7.11" + sources."@webassemblyjs/ieee754-1.7.11" + sources."@webassemblyjs/leb128-1.7.11" + sources."@webassemblyjs/utf8-1.7.11" + sources."@webassemblyjs/wasm-gen-1.7.11" + sources."@webassemblyjs/wasm-parser-1.7.11" + sources."@webassemblyjs/wast-parser-1.7.11" + sources."@webassemblyjs/wast-printer-1.7.11" sources."@xtuc/ieee754-1.2.0" sources."@xtuc/long-4.2.1" ]; @@ -58015,31 +61346,31 @@ in "@webassemblyjs/wasm-text-gen" = nodeEnv.buildNodePackage { name = "_at_webassemblyjs_slash_wasm-text-gen"; packageName = "@webassemblyjs/wasm-text-gen"; - version = "1.7.8"; + version = "1.7.11"; src = fetchurl { - url = "https://registry.npmjs.org/@webassemblyjs/wasm-text-gen/-/wasm-text-gen-1.7.8.tgz"; - sha512 = "cDzQh/rniwchQfzGQriAg7Io2xqEu5s1Po29jMkRfJse4OFbh54aWcbKk2DO0ph+9lbNQZ0VYTPBP5NGIKqNmw=="; + url = "https://registry.npmjs.org/@webassemblyjs/wasm-text-gen/-/wasm-text-gen-1.7.11.tgz"; + sha512 = "hU3q8os4NyVxC0QpDcaPyUqsfL3aMw4vjIxhw83QbBUo/nJxqn7hQ5tcB/YiHpUxASrlEAt5dcuIupdto84DZA=="; }; dependencies = [ sources."@babel/code-frame-7.0.0" - sources."@babel/generator-7.1.3" + sources."@babel/generator-7.1.5" sources."@babel/highlight-7.0.0" - sources."@babel/parser-7.1.3" + sources."@babel/parser-7.1.5" sources."@babel/template-7.1.2" - sources."@babel/types-7.1.3" - sources."@webassemblyjs/ast-1.7.8" - sources."@webassemblyjs/floating-point-hex-parser-1.7.8" - sources."@webassemblyjs/helper-api-error-1.7.8" - sources."@webassemblyjs/helper-code-frame-1.7.8" - sources."@webassemblyjs/helper-fsm-1.7.8" - sources."@webassemblyjs/helper-module-context-1.7.8" - sources."@webassemblyjs/helper-wasm-bytecode-1.7.8" - sources."@webassemblyjs/ieee754-1.7.8" - sources."@webassemblyjs/leb128-1.7.8" - sources."@webassemblyjs/utf8-1.7.8" - sources."@webassemblyjs/wasm-parser-1.7.8" - sources."@webassemblyjs/wast-parser-1.7.8" - sources."@webassemblyjs/wast-printer-1.7.8" + sources."@babel/types-7.1.5" + sources."@webassemblyjs/ast-1.7.11" + sources."@webassemblyjs/floating-point-hex-parser-1.7.11" + sources."@webassemblyjs/helper-api-error-1.7.11" + sources."@webassemblyjs/helper-code-frame-1.7.11" + sources."@webassemblyjs/helper-fsm-1.7.11" + sources."@webassemblyjs/helper-module-context-1.7.11" + sources."@webassemblyjs/helper-wasm-bytecode-1.7.11" + sources."@webassemblyjs/ieee754-1.7.11" + sources."@webassemblyjs/leb128-1.7.11" + sources."@webassemblyjs/utf8-1.7.11" + sources."@webassemblyjs/wasm-parser-1.7.11" + sources."@webassemblyjs/wast-parser-1.7.11" + sources."@webassemblyjs/wast-printer-1.7.11" sources."@xtuc/ieee754-1.2.0" sources."@xtuc/long-4.2.1" sources."ansi-styles-3.2.1" @@ -58051,7 +61382,7 @@ in sources."esutils-2.0.2" sources."has-flag-3.0.0" sources."js-tokens-4.0.0" - sources."jsesc-2.5.1" + sources."jsesc-2.5.2" sources."lodash-4.17.11" sources."source-map-0.5.7" sources."supports-color-5.5.0" @@ -58069,21 +61400,21 @@ in "@webassemblyjs/wast-refmt" = nodeEnv.buildNodePackage { name = "_at_webassemblyjs_slash_wast-refmt"; packageName = "@webassemblyjs/wast-refmt"; - version = "1.7.8"; + version = "1.7.11"; src = fetchurl { - url = "https://registry.npmjs.org/@webassemblyjs/wast-refmt/-/wast-refmt-1.7.8.tgz"; - sha512 = "eSkc1/NnfbMYQP/DQaC2W0/DEY/TO4reAS/F/v2cnafFMBrwJ8xQCQwr9IAMiez1aKKYZmL4kyRRbU/0Q9Qbtg=="; + url = "https://registry.npmjs.org/@webassemblyjs/wast-refmt/-/wast-refmt-1.7.11.tgz"; + sha512 = "o5PX9iAsVyEjt5HptTCyHPctSs3J17l33bGSSOejqEZpdRbKqPF3+5AXbBflU4eDOEU1daKqbVq4bRAYcH6dfg=="; }; dependencies = [ - sources."@webassemblyjs/ast-1.7.8" - sources."@webassemblyjs/floating-point-hex-parser-1.7.8" - sources."@webassemblyjs/helper-api-error-1.7.8" - sources."@webassemblyjs/helper-code-frame-1.7.8" - sources."@webassemblyjs/helper-fsm-1.7.8" - sources."@webassemblyjs/helper-module-context-1.7.8" - sources."@webassemblyjs/helper-wasm-bytecode-1.7.8" - sources."@webassemblyjs/wast-parser-1.7.8" - sources."@webassemblyjs/wast-printer-1.7.8" + sources."@webassemblyjs/ast-1.7.11" + sources."@webassemblyjs/floating-point-hex-parser-1.7.11" + sources."@webassemblyjs/helper-api-error-1.7.11" + sources."@webassemblyjs/helper-code-frame-1.7.11" + sources."@webassemblyjs/helper-fsm-1.7.11" + sources."@webassemblyjs/helper-module-context-1.7.11" + sources."@webassemblyjs/helper-wasm-bytecode-1.7.11" + sources."@webassemblyjs/wast-parser-1.7.11" + sources."@webassemblyjs/wast-printer-1.7.11" sources."@xtuc/long-4.2.1" ]; buildInputs = globalBuildInputs; @@ -58159,7 +61490,7 @@ in ]; }) sources."glob-7.1.3" - sources."graceful-fs-4.1.11" + sources."graceful-fs-4.1.15" sources."har-validator-2.0.6" sources."has-ansi-2.0.0" sources."hasha-2.2.0" @@ -58190,8 +61521,8 @@ in sources."kew-0.1.7" sources."klaw-1.3.1" sources."lodash-4.17.11" - sources."mime-db-1.36.0" - sources."mime-types-2.1.20" + sources."mime-db-1.37.0" + sources."mime-types-2.1.21" sources."minimatch-3.0.4" sources."minimist-0.0.8" sources."mkdirp-0.3.5" @@ -58222,7 +61553,7 @@ in sources."safer-buffer-2.1.2" sources."semver-2.3.2" sources."sntp-1.0.9" - (sources."sshpk-1.15.1" // { + (sources."sshpk-1.15.2" // { dependencies = [ sources."assert-plus-1.0.0" ]; @@ -58261,35 +61592,35 @@ in webpack = nodeEnv.buildNodePackage { name = "webpack"; packageName = "webpack"; - version = "4.20.2"; + version = "4.25.1"; src = fetchurl { - url = "https://registry.npmjs.org/webpack/-/webpack-4.20.2.tgz"; - sha512 = "75WFUMblcWYcocjSLlXCb71QuGyH7egdBZu50FtBGl2Nso8CK3Ej+J7bTZz2FPFq5l6fzCisD9modB7t30ikuA=="; + url = "https://registry.npmjs.org/webpack/-/webpack-4.25.1.tgz"; + sha512 = "T0GU/3NRtO4tMfNzsvpdhUr8HnzA4LTdP2zd+e5zd6CdOH5vNKHnAlO+DvzccfhPdzqRrALOFcjYxx7K5DWmvA=="; }; dependencies = [ - sources."@webassemblyjs/ast-1.7.8" - sources."@webassemblyjs/floating-point-hex-parser-1.7.8" - sources."@webassemblyjs/helper-api-error-1.7.8" - sources."@webassemblyjs/helper-buffer-1.7.8" - sources."@webassemblyjs/helper-code-frame-1.7.8" - sources."@webassemblyjs/helper-fsm-1.7.8" - sources."@webassemblyjs/helper-module-context-1.7.8" - sources."@webassemblyjs/helper-wasm-bytecode-1.7.8" - sources."@webassemblyjs/helper-wasm-section-1.7.8" - sources."@webassemblyjs/ieee754-1.7.8" - sources."@webassemblyjs/leb128-1.7.8" - sources."@webassemblyjs/utf8-1.7.8" - sources."@webassemblyjs/wasm-edit-1.7.8" - sources."@webassemblyjs/wasm-gen-1.7.8" - sources."@webassemblyjs/wasm-opt-1.7.8" - sources."@webassemblyjs/wasm-parser-1.7.8" - sources."@webassemblyjs/wast-parser-1.7.8" - sources."@webassemblyjs/wast-printer-1.7.8" + sources."@webassemblyjs/ast-1.7.11" + sources."@webassemblyjs/floating-point-hex-parser-1.7.11" + sources."@webassemblyjs/helper-api-error-1.7.11" + sources."@webassemblyjs/helper-buffer-1.7.11" + sources."@webassemblyjs/helper-code-frame-1.7.11" + sources."@webassemblyjs/helper-fsm-1.7.11" + sources."@webassemblyjs/helper-module-context-1.7.11" + sources."@webassemblyjs/helper-wasm-bytecode-1.7.11" + sources."@webassemblyjs/helper-wasm-section-1.7.11" + sources."@webassemblyjs/ieee754-1.7.11" + sources."@webassemblyjs/leb128-1.7.11" + sources."@webassemblyjs/utf8-1.7.11" + sources."@webassemblyjs/wasm-edit-1.7.11" + sources."@webassemblyjs/wasm-gen-1.7.11" + sources."@webassemblyjs/wasm-opt-1.7.11" + sources."@webassemblyjs/wasm-parser-1.7.11" + sources."@webassemblyjs/wast-parser-1.7.11" + sources."@webassemblyjs/wast-printer-1.7.11" sources."@xtuc/ieee754-1.2.0" sources."@xtuc/long-4.2.1" sources."acorn-5.7.3" sources."acorn-dynamic-import-3.0.0" - sources."ajv-6.5.4" + sources."ajv-6.5.5" sources."ajv-keywords-3.2.0" sources."anymatch-2.0.0" sources."aproba-1.2.0" @@ -58316,7 +61647,7 @@ in sources."base64-js-1.3.0" sources."big.js-3.2.0" sources."binary-extensions-1.12.0" - sources."bluebird-3.5.2" + sources."bluebird-3.5.3" sources."bn.js-4.11.8" sources."brace-expansion-1.1.11" (sources."braces-2.3.2" // { @@ -58444,7 +61775,7 @@ in sources."is-glob-3.1.0" ]; }) - sources."graceful-fs-4.1.11" + sources."graceful-fs-4.1.15" sources."has-value-1.0.0" (sources."has-values-1.0.0" // { dependencies = [ @@ -58640,7 +61971,7 @@ in sources."stream-shift-1.0.0" sources."string_decoder-1.1.1" sources."tapable-1.1.0" - sources."through2-2.0.3" + sources."through2-2.0.5" sources."timers-browserify-2.0.10" sources."to-arraybuffer-1.0.1" (sources."to-object-path-0.3.0" // { @@ -58820,7 +62151,7 @@ in sources."flatten-1.0.2" (sources."fs-chunk-store-1.7.0" // { dependencies = [ - sources."thunky-1.0.2" + sources."thunky-1.0.3" ]; }) sources."fs.realpath-1.0.0" @@ -58882,7 +62213,7 @@ in sources."ms-2.0.0" (sources."multicast-dns-6.2.3" // { dependencies = [ - sources."thunky-1.0.2" + sources."thunky-1.0.3" ]; }) (sources."multistream-2.1.1" // { @@ -59022,15 +62353,21 @@ in web-ext = nodeEnv.buildNodePackage { name = "web-ext"; packageName = "web-ext"; - version = "2.9.1"; + version = "2.9.2"; src = fetchurl { - url = "https://registry.npmjs.org/web-ext/-/web-ext-2.9.1.tgz"; - sha512 = "sK5ebAiUNJFG+KfFjjvWks9ihecy0TdVCrrnSW/tZ15QFO6u4LCIQKCuBr7FyGMjC+IOGJFB7pS1ZbyPNJ72GQ=="; + url = "https://registry.npmjs.org/web-ext/-/web-ext-2.9.2.tgz"; + sha512 = "eJYKR7BMlpWXSeOP91LvsQkLHKcRE8wWkQYdlEkHzntASlFMbGZcIk6/R5myA/Yo5E87WWoCmqKO9rdUSVtQMA=="; }; dependencies = [ + sources."@babel/polyfill-7.0.0" + (sources."@babel/register-7.0.0" // { + dependencies = [ + sources."source-map-support-0.5.9" + ]; + }) sources."@cliqz-oss/firefox-client-0.3.1" sources."@cliqz-oss/node-firefox-connect-1.2.1" - sources."@types/node-10.11.7" + sources."@types/node-10.12.5" sources."@yarnpkg/lockfile-1.1.0" sources."JSONSelect-0.2.1" sources."abbrev-1.1.1" @@ -59043,40 +62380,41 @@ in sources."adbkit-2.11.0" sources."adbkit-logcat-1.1.0" sources."adbkit-monkey-1.0.1" - (sources."addons-linter-1.3.1" // { + (sources."addons-linter-1.3.8" // { dependencies = [ - sources."cross-spawn-5.1.0" - sources."execa-0.7.0" - sources."invert-kv-1.0.0" - sources."lcid-1.0.0" - sources."mem-1.1.0" - sources."source-map-0.6.1" + sources."find-up-3.0.0" + sources."locate-path-3.0.0" + sources."p-limit-2.0.0" + sources."p-locate-3.0.0" + sources."p-try-2.0.0" sources."source-map-support-0.5.6" - (sources."yargs-12.0.1" // { - dependencies = [ - sources."os-locale-2.1.0" - ]; - }) + sources."yargs-12.0.2" + sources."yargs-parser-10.1.0" ]; }) sources."adm-zip-0.4.11" sources."agent-base-4.2.1" - sources."ajv-6.5.2" + sources."ajv-6.5.4" sources."ajv-keywords-3.2.0" sources."ajv-merge-patch-4.1.0" sources."ansi-align-2.0.0" sources."ansi-escapes-3.1.0" sources."ansi-regex-2.1.1" - sources."ansi-styles-2.2.1" + sources."ansi-styles-3.2.1" sources."ansicolors-0.3.2" sources."any-promise-1.3.0" sources."anymatch-2.0.0" (sources."archiver-2.1.1" // { dependencies = [ sources."async-2.6.1" + sources."readable-stream-2.3.6" + ]; + }) + (sources."archiver-utils-1.3.0" // { + dependencies = [ + sources."readable-stream-2.3.6" ]; }) - sources."archiver-utils-1.3.0" sources."archy-1.0.0" sources."argparse-1.0.10" sources."arr-diff-4.0.0" @@ -59104,28 +62442,17 @@ in sources."aws4-1.8.0" (sources."babel-code-frame-6.26.0" // { dependencies = [ + sources."ansi-styles-2.2.1" sources."chalk-1.1.3" + sources."supports-color-2.0.0" ]; }) - sources."babel-core-6.26.3" - sources."babel-generator-6.26.1" - sources."babel-helpers-6.24.1" - sources."babel-messages-6.23.0" (sources."babel-polyfill-6.26.0" // { dependencies = [ sources."regenerator-runtime-0.10.5" ]; }) - (sources."babel-register-6.26.0" // { - dependencies = [ - sources."source-map-support-0.4.18" - ]; - }) sources."babel-runtime-6.26.0" - sources."babel-template-6.26.0" - sources."babel-traverse-6.26.0" - sources."babel-types-6.26.0" - sources."babylon-6.18.0" sources."balanced-match-1.0.0" (sources."base-0.11.2" // { dependencies = [ @@ -59135,7 +62462,11 @@ in sources."base64-js-1.3.0" sources."bcrypt-pbkdf-1.0.2" sources."binary-extensions-1.12.0" - sources."bl-1.2.2" + (sources."bl-1.2.2" // { + dependencies = [ + sources."readable-stream-2.3.6" + ]; + }) sources."bluebird-2.9.34" sources."boolbase-1.0.0" sources."boxen-1.3.0" @@ -59161,12 +62492,7 @@ in sources."camelcase-4.1.0" sources."capture-stack-trace-1.0.1" sources."caseless-0.12.0" - (sources."chalk-2.4.0" // { - dependencies = [ - sources."ansi-styles-3.2.1" - sources."supports-color-5.5.0" - ]; - }) + sources."chalk-2.4.0" sources."chardet-0.4.2" sources."cheerio-1.0.0-rc.2" sources."chokidar-2.0.4" @@ -59209,23 +62535,35 @@ in sources."combined-stream-1.0.7" sources."commander-2.19.0" sources."common-tags-1.8.0" + sources."commondir-1.0.1" sources."component-emitter-1.2.1" - sources."compress-commons-1.2.2" + (sources."compress-commons-1.2.2" // { + dependencies = [ + sources."readable-stream-2.3.6" + ]; + }) sources."concat-map-0.0.1" - sources."concat-stream-1.6.2" + (sources."concat-stream-1.6.2" // { + dependencies = [ + sources."readable-stream-2.3.6" + ]; + }) sources."configstore-3.1.2" - sources."convert-source-map-1.6.0" sources."copy-descriptor-0.1.1" sources."core-js-2.5.7" sources."core-util-is-1.0.2" sources."crc-3.8.0" - sources."crc32-stream-2.0.0" + (sources."crc32-stream-2.0.0" // { + dependencies = [ + sources."readable-stream-2.3.6" + ]; + }) sources."create-error-class-3.0.2" sources."cross-spawn-6.0.5" sources."crx-parser-0.1.2" sources."crypto-random-string-1.0.0" sources."css-select-1.2.0" - sources."css-what-2.1.0" + sources."css-what-2.1.2" sources."d-1.0.0" sources."dashdash-1.14.1" sources."data-uri-to-buffer-1.2.0" @@ -59241,21 +62579,26 @@ in sources."deep-extend-0.6.0" sources."deep-is-0.1.3" sources."deepcopy-0.6.3" - sources."deepmerge-2.1.1" + sources."deepmerge-2.2.1" sources."defaults-1.0.3" sources."define-properties-1.1.3" sources."define-property-2.0.2" sources."degenerator-1.0.4" - sources."del-2.2.2" + sources."del-3.0.0" sources."delayed-stream-1.0.0" sources."depd-1.1.2" - sources."detect-indent-4.0.0" - (sources."dispensary-0.22.0" // { + (sources."dispensary-0.26.0" // { dependencies = [ sources."async-2.6.1" - sources."source-map-0.6.1" + sources."decamelize-1.2.0" + sources."find-up-3.0.0" + sources."locate-path-3.0.0" + sources."p-limit-2.0.0" + sources."p-locate-3.0.0" + sources."p-try-2.0.0" + sources."pino-5.8.1" sources."source-map-support-0.5.9" - sources."yargs-12.0.2" + sources."yargs-12.0.4" ]; }) sources."doctrine-2.1.0" @@ -59275,7 +62618,7 @@ in sources."email-validator-2.0.4" sources."encoding-0.1.12" sources."end-of-stream-1.4.1" - sources."entities-1.1.1" + sources."entities-1.1.2" sources."error-ex-1.3.2" sources."es-abstract-1.12.0" sources."es-to-primitive-1.2.0" @@ -59293,17 +62636,12 @@ in sources."es6-symbol-3.1.1" sources."es6-weak-map-2.0.2" sources."escape-string-regexp-1.0.5" - (sources."escodegen-1.11.0" // { - dependencies = [ - sources."source-map-0.6.1" - ]; - }) + sources."escodegen-1.11.0" sources."escope-3.6.0" (sources."eslint-5.0.1" // { dependencies = [ sources."ansi-regex-3.0.0" sources."debug-3.2.6" - sources."globals-11.8.0" sources."ms-2.1.1" sources."strip-ansi-4.0.0" ]; @@ -59314,11 +62652,13 @@ in sources."ajv-keywords-1.5.1" sources."ansi-escapes-1.4.0" sources."ansi-regex-3.0.0" + sources."ansi-styles-2.2.1" sources."chalk-1.1.3" sources."cli-cursor-1.0.2" sources."eslint-3.19.0" sources."espree-3.5.4" sources."figures-1.7.0" + sources."globals-9.18.0" sources."inquirer-0.12.0" sources."is-fullwidth-code-point-2.0.0" sources."onetime-1.1.0" @@ -59330,6 +62670,7 @@ in sources."slice-ansi-0.0.4" sources."string-width-1.0.2" sources."strip-ansi-4.0.0" + sources."supports-color-2.0.0" (sources."table-3.8.3" // { dependencies = [ sources."string-width-2.1.1" @@ -59401,24 +62742,25 @@ in sources."extend-shallow-2.0.1" ]; }) - sources."find-up-3.0.0" + sources."find-cache-dir-1.0.0" + sources."find-up-2.1.0" (sources."firefox-profile-1.2.0" // { dependencies = [ sources."async-2.5.0" ]; }) - sources."first-chunk-stream-2.0.0" - sources."flat-cache-1.3.0" + (sources."first-chunk-stream-2.0.0" // { + dependencies = [ + sources."readable-stream-2.3.6" + ]; + }) + sources."flat-cache-1.3.2" sources."flatstr-1.0.8" sources."fluent-syntax-0.7.0" sources."for-in-1.0.2" sources."for-own-1.0.0" sources."forever-agent-0.6.1" - (sources."form-data-2.3.2" // { - dependencies = [ - sources."combined-stream-1.0.6" - ]; - }) + sources."form-data-2.3.3" sources."fragment-cache-0.2.1" sources."fs-constants-1.0.0" sources."fs-extra-4.0.3" @@ -59445,26 +62787,35 @@ in sources."generate-object-property-1.2.0" sources."get-caller-file-1.0.3" sources."get-stream-3.0.0" - sources."get-uri-2.0.2" + (sources."get-uri-2.0.2" // { + dependencies = [ + sources."readable-stream-2.3.6" + ]; + }) sources."get-value-2.0.6" sources."getpass-0.1.7" sources."gettext-parser-1.1.0" (sources."git-rev-sync-1.9.1" // { dependencies = [ + sources."graceful-fs-4.1.11" sources."shelljs-0.7.7" ]; }) - sources."glob-7.1.2" + sources."glob-7.1.3" (sources."glob-parent-3.1.0" // { dependencies = [ sources."is-glob-3.1.0" ]; }) sources."global-dirs-0.1.1" - sources."globals-9.18.0" - sources."globby-5.0.0" + sources."globals-11.8.0" + (sources."globby-6.1.0" // { + dependencies = [ + sources."pify-2.3.0" + ]; + }) sources."got-6.7.1" - sources."graceful-fs-4.1.11" + sources."graceful-fs-4.1.15" sources."graceful-readlink-1.0.1" sources."graphlib-2.1.5" sources."growly-1.3.0" @@ -59492,9 +62843,9 @@ in sources."async-1.5.2" ]; }) - sources."home-or-tmp-2.0.0" + sources."home-or-tmp-3.0.0" sources."hosted-git-info-2.7.1" - sources."htmlparser2-3.9.2" + sources."htmlparser2-3.10.0" sources."http-errors-1.6.3" (sources."http-proxy-agent-2.1.0" // { dependencies = [ @@ -59524,7 +62875,6 @@ in ]; }) sources."interpret-1.1.0" - sources."invariant-2.2.4" sources."invert-kv-2.0.0" sources."ip-1.1.5" sources."is-absolute-0.1.7" @@ -59551,7 +62901,6 @@ in }) sources."is-extendable-0.1.1" sources."is-extglob-2.1.1" - sources."is-finite-1.0.2" sources."is-fullwidth-code-point-1.0.0" sources."is-glob-4.0.0" sources."is-installed-globally-0.1.0" @@ -59592,7 +62941,6 @@ in ]; }) sources."jsbn-0.1.1" - sources."jsesc-1.3.0" sources."json-merge-patch-0.2.3" sources."json-parse-better-errors-1.0.2" sources."json-schema-0.2.3" @@ -59600,7 +62948,6 @@ in sources."json-stable-stringify-1.0.1" sources."json-stable-stringify-without-jsonify-1.0.1" sources."json-stringify-safe-5.0.1" - sources."json5-0.5.1" sources."jsonfile-4.0.0" sources."jsonify-0.0.0" sources."jsonpointer-4.0.1" @@ -59624,17 +62971,22 @@ in sources."kind-of-3.2.2" sources."latest-version-3.1.0" sources."lazy-cache-0.2.7" - sources."lazystream-1.0.0" + (sources."lazystream-1.0.0" // { + dependencies = [ + sources."readable-stream-2.3.6" + ]; + }) sources."lcid-2.0.0" sources."levn-0.3.0" sources."lie-3.1.1" (sources."load-json-file-1.1.0" // { dependencies = [ sources."parse-json-2.2.0" + sources."pify-2.3.0" sources."strip-bom-2.0.0" ]; }) - sources."locate-path-3.0.0" + sources."locate-path-2.0.0" sources."lodash-4.17.11" sources."lodash.assign-4.2.0" sources."lodash.assignin-4.2.0" @@ -59652,25 +63004,21 @@ in sources."lodash.once-4.1.1" sources."lodash.set-4.3.2" sources."lodash.sortby-4.7.0" - sources."loose-envify-1.4.0" sources."lowercase-keys-1.0.1" sources."lru-cache-4.1.3" sources."macos-release-1.1.0" - (sources."make-dir-1.3.0" // { - dependencies = [ - sources."pify-3.0.0" - ]; - }) + sources."make-dir-1.3.0" + sources."map-age-cleaner-0.1.2" sources."map-cache-0.2.2" sources."map-visit-1.0.0" - sources."mem-3.0.1" + sources."mem-4.0.0" (sources."micromatch-3.1.10" // { dependencies = [ sources."kind-of-6.0.2" ]; }) - sources."mime-db-1.36.0" - sources."mime-types-2.1.20" + sources."mime-db-1.37.0" + sources."mime-types-2.1.21" sources."mimic-fn-1.2.0" sources."minimatch-3.0.4" sources."minimist-1.2.0" @@ -59729,6 +63077,7 @@ in sources."next-tick-1.0.0" sources."nice-try-1.0.5" sources."node-forge-0.7.6" + sources."node-modules-regexp-1.0.0" sources."node-notifier-5.2.1" (sources."nomnom-1.8.1" // { dependencies = [ @@ -59740,7 +63089,7 @@ in sources."normalize-package-data-2.4.0" sources."normalize-path-2.1.1" sources."npm-run-path-2.0.2" - sources."nth-check-1.0.1" + sources."nth-check-1.0.2" sources."number-is-nan-1.0.1" sources."oauth-sign-0.9.0" sources."object-assign-4.1.1" @@ -59764,15 +63113,17 @@ in sources."opn-5.3.0" sources."optionator-0.8.2" sources."os-homedir-1.0.2" - sources."os-locale-3.0.0" + sources."os-locale-3.0.1" sources."os-name-2.0.1" sources."os-shim-0.1.3" sources."os-tmpdir-1.0.2" + sources."p-defer-1.0.0" sources."p-finally-1.0.0" sources."p-is-promise-1.1.0" - sources."p-limit-2.0.0" - sources."p-locate-3.0.0" - sources."p-try-2.0.0" + sources."p-limit-1.3.0" + sources."p-locate-2.0.0" + sources."p-map-1.2.0" + sources."p-try-1.0.0" (sources."pac-proxy-agent-2.0.2" // { dependencies = [ sources."debug-3.2.6" @@ -59792,32 +63143,34 @@ in sources."path-is-inside-1.0.2" sources."path-key-2.0.1" sources."path-parse-1.0.6" - sources."path-type-1.1.0" + (sources."path-type-1.1.0" // { + dependencies = [ + sources."pify-2.3.0" + ]; + }) sources."pend-1.2.0" sources."performance-now-2.1.0" - sources."pify-2.3.0" + sources."pify-3.0.0" sources."pinkie-2.0.4" sources."pinkie-promise-2.0.1" - sources."pino-5.0.4" + sources."pino-5.5.0" sources."pino-std-serializers-2.3.0" + sources."pirates-4.0.0" + sources."pkg-dir-2.0.0" sources."pluralize-7.0.0" sources."po2json-0.4.5" sources."posix-character-classes-0.1.1" - (sources."postcss-6.0.23" // { + (sources."postcss-7.0.5" // { dependencies = [ - sources."ansi-styles-3.2.1" sources."chalk-2.4.1" - sources."source-map-0.6.1" - sources."supports-color-5.5.0" ]; }) sources."prelude-ls-1.1.2" sources."prepend-http-1.0.4" - sources."private-0.1.8" sources."probe-image-size-4.0.0" sources."process-0.11.10" sources."process-nextick-args-2.0.0" - sources."progress-2.0.0" + sources."progress-2.0.1" sources."promise-7.3.1" (sources."proxy-agent-2.3.1" // { dependencies = [ @@ -59831,7 +63184,7 @@ in sources."pump-3.0.0" sources."punycode-2.1.1" sources."qs-6.5.2" - sources."quick-format-unescaped-3.0.0" + sources."quick-format-unescaped-3.0.1" (sources."raw-body-2.3.3" // { dependencies = [ sources."iconv-lite-0.4.23" @@ -59845,8 +63198,12 @@ in sources."path-exists-2.1.0" ]; }) - sources."readable-stream-2.3.6" - sources."readdirp-2.2.1" + sources."readable-stream-3.0.6" + (sources."readdirp-2.2.1" // { + dependencies = [ + sources."readable-stream-2.3.6" + ]; + }) (sources."readline2-1.0.1" // { dependencies = [ sources."mute-stream-0.0.5" @@ -59862,13 +63219,14 @@ in sources."registry-url-3.1.0" (sources."relaxed-json-1.0.1" // { dependencies = [ + sources."ansi-styles-2.2.1" sources."chalk-1.1.3" + sources."supports-color-2.0.0" ]; }) sources."remove-trailing-separator-1.1.0" sources."repeat-element-1.1.3" sources."repeat-string-1.6.1" - sources."repeating-2.0.1" sources."request-2.88.0" sources."require-directory-2.1.1" sources."require-main-filename-1.0.1" @@ -59889,7 +63247,7 @@ in sources."safer-buffer-2.1.2" sources."sax-1.2.4" sources."secure-keys-1.0.0" - sources."semver-5.5.0" + sources."semver-5.6.0" sources."semver-diff-2.1.0" sources."set-blocking-2.0.0" (sources."set-value-2.0.0" // { @@ -59922,12 +63280,12 @@ in sources."punycode-1.4.1" sources."regenerator-runtime-0.9.6" sources."request-2.87.0" + sources."source-map-0.5.7" sources."source-map-support-0.4.6" sources."tough-cookie-2.3.4" ]; }) sources."signal-exit-3.0.2" - sources."slash-1.0.0" (sources."slice-ansi-1.0.0" // { dependencies = [ sources."is-fullwidth-code-point-2.0.0" @@ -59950,6 +63308,7 @@ in }) sources."is-descriptor-0.1.6" sources."kind-of-5.1.0" + sources."source-map-0.5.7" ]; }) (sources."snapdragon-node-2.1.1" // { @@ -59958,19 +63317,16 @@ in ]; }) sources."snapdragon-util-3.0.1" - (sources."snyk-1.103.4" // { + (sources."snyk-1.103.2" // { dependencies = [ sources."ansi-regex-3.0.0" - sources."ansi-styles-3.2.1" sources."chalk-2.4.1" sources."debug-3.2.6" sources."inquirer-3.3.0" sources."ms-2.1.1" sources."rx-lite-4.0.8" - sources."source-map-0.6.1" sources."source-map-support-0.5.9" sources."strip-ansi-4.0.0" - sources."supports-color-5.5.0" ]; }) (sources."snyk-config-2.2.0" // { @@ -59994,10 +63350,9 @@ in ]; }) sources."snyk-mvn-plugin-2.0.0" - (sources."snyk-nodejs-lockfile-parser-1.5.3" // { + (sources."snyk-nodejs-lockfile-parser-1.5.1" // { dependencies = [ sources."lodash-4.17.10" - sources."source-map-0.6.1" sources."source-map-support-0.5.9" ]; }) @@ -60026,11 +63381,10 @@ in sources."ms-2.1.1" ]; }) - (sources."snyk-resolve-deps-4.0.2" // { + (sources."snyk-resolve-deps-4.0.1" // { dependencies = [ sources."debug-3.2.6" sources."ms-2.1.1" - sources."semver-5.6.0" ]; }) sources."snyk-sbt-plugin-2.0.0" @@ -60043,24 +63397,20 @@ in }) sources."socks-1.1.10" sources."socks-proxy-agent-3.0.1" - sources."sonic-boom-0.6.1" - sources."source-map-0.5.7" + sources."sonic-boom-0.6.2" + sources."source-map-0.6.1" sources."source-map-resolve-0.5.2" - (sources."source-map-support-0.5.3" // { - dependencies = [ - sources."source-map-0.6.1" - ]; - }) + sources."source-map-support-0.5.3" sources."source-map-url-0.4.0" sources."spawn-sync-1.0.15" sources."spdx-correct-3.0.2" sources."spdx-exceptions-2.2.0" sources."spdx-expression-parse-3.0.0" - sources."spdx-license-ids-3.0.1" + sources."spdx-license-ids-3.0.2" sources."split-0.3.3" sources."split-string-3.1.0" sources."sprintf-js-1.0.3" - sources."sshpk-1.15.1" + sources."sshpk-1.15.2" (sources."static-extend-0.1.2" // { dependencies = [ sources."define-property-0.2.5" @@ -60102,10 +63452,14 @@ in sources."strip-bom-stream-3.0.0" sources."strip-eof-1.0.0" sources."strip-json-comments-2.0.1" - sources."supports-color-2.0.0" + sources."supports-color-5.5.0" sources."symbol-observable-1.0.1" sources."table-4.0.3" - sources."tar-stream-1.6.2" + (sources."tar-stream-1.6.2" // { + dependencies = [ + sources."readable-stream-2.3.6" + ]; + }) sources."temp-dir-1.0.0" sources."tempfile-2.0.0" (sources."term-size-1.2.0" // { @@ -60123,7 +63477,6 @@ in sources."timed-out-4.0.1" sources."tmp-0.0.33" sources."to-buffer-1.1.1" - sources."to-fast-properties-1.0.3" sources."to-object-path-0.3.0" sources."to-regex-3.0.2" sources."to-regex-range-2.1.1" @@ -60136,7 +63489,6 @@ in }) sources."tr46-1.0.1" sources."traverse-0.4.6" - sources."trim-right-1.0.1" sources."tslib-1.9.3" sources."tunnel-agent-0.6.0" sources."tweetnacl-0.14.5" @@ -60179,11 +63531,11 @@ in sources."watchpack-1.5.0" sources."wcwidth-1.0.1" sources."webidl-conversions-4.0.2" - sources."whatwg-url-6.5.0" + sources."whatwg-url-7.0.0" sources."when-3.7.7" sources."which-1.3.1" sources."which-module-2.0.0" - sources."widest-line-2.0.0" + sources."widest-line-2.0.1" sources."win-release-1.1.1" sources."window-size-0.1.4" sources."winreg-0.0.12" @@ -60218,7 +63570,12 @@ in sources."yargs-parser-4.2.1" ]; }) - sources."yargs-parser-10.1.0" + (sources."yargs-parser-11.1.0" // { + dependencies = [ + sources."camelcase-5.0.0" + sources."decamelize-1.2.0" + ]; + }) sources."yauzl-2.9.2" (sources."zip-dir-1.0.2" // { dependencies = [ @@ -60226,7 +63583,11 @@ in sources."jszip-2.6.1" ]; }) - sources."zip-stream-1.2.0" + (sources."zip-stream-1.2.0" // { + dependencies = [ + sources."readable-stream-2.3.6" + ]; + }) ]; buildInputs = globalBuildInputs; meta = { @@ -60257,10 +63618,10 @@ in yarn = nodeEnv.buildNodePackage { name = "yarn"; packageName = "yarn"; - version = "1.10.1"; + version = "1.12.3"; src = fetchurl { - url = "https://registry.npmjs.org/yarn/-/yarn-1.10.1.tgz"; - sha512 = "EH0H1fyfFxkE4UpG4b+VCaVY4I488I2EyQNmGjGGKmvsSIb0G3b+1IcfGYPI2gqa1du43g4ZA3jH8fXlq6oVxg=="; + url = "https://registry.npmjs.org/yarn/-/yarn-1.12.3.tgz"; + sha512 = "8f5rWNDvkhAmCxmn8C0LsNWMxTYVk4VGKiq0sIB6HGZjaZTHsGIH87SUmVDUEd2Wk54bqKoUlbVWgQFCQhRkVw=="; }; buildInputs = globalBuildInputs; meta = { @@ -60281,7 +63642,7 @@ in }; dependencies = [ sources."@mrmlnc/readdir-enhanced-2.2.1" - sources."@nodelib/fs.stat-1.1.2" + sources."@nodelib/fs.stat-1.1.3" sources."@sindresorhus/is-0.7.0" sources."aggregate-error-1.0.0" sources."ajv-5.5.2" @@ -60477,11 +63838,7 @@ in sources."for-in-1.0.2" sources."foreachasync-3.0.0" sources."forever-agent-0.6.1" - (sources."form-data-2.3.2" // { - dependencies = [ - sources."combined-stream-1.0.6" - ]; - }) + sources."form-data-2.3.3" sources."fragment-cache-0.2.1" sources."from2-2.3.0" sources."fs.realpath-1.0.0" @@ -60502,7 +63859,7 @@ in sources."global-tunnel-ng-2.6.0" sources."globby-8.0.1" sources."got-8.3.2" - sources."graceful-fs-4.1.11" + sources."graceful-fs-4.1.15" sources."grouped-queue-0.3.3" sources."har-schema-2.0.0" sources."har-validator-5.1.0" @@ -60634,8 +63991,8 @@ in }) sources."merge2-1.2.3" sources."micromatch-3.1.10" - sources."mime-db-1.36.0" - sources."mime-types-2.1.20" + sources."mime-db-1.37.0" + sources."mime-types-2.1.21" sources."mimic-fn-1.2.0" sources."mimic-response-1.0.1" sources."minimatch-3.0.4" @@ -60833,9 +64190,9 @@ in sources."spdx-correct-3.0.2" sources."spdx-exceptions-2.2.0" sources."spdx-expression-parse-3.0.0" - sources."spdx-license-ids-3.0.1" + sources."spdx-license-ids-3.0.2" sources."split-string-3.1.0" - sources."sshpk-1.15.1" + sources."sshpk-1.15.2" (sources."static-extend-0.1.2" // { dependencies = [ sources."define-property-0.2.5" @@ -60903,7 +64260,7 @@ in }) sources."text-table-0.2.0" sources."through-2.3.8" - sources."through2-2.0.3" + sources."through2-2.0.5" sources."timed-out-4.0.1" sources."titleize-1.0.1" sources."tmp-0.0.33" @@ -60959,7 +64316,7 @@ in }) sources."walk-2.3.14" sources."which-1.3.1" - sources."widest-line-2.0.0" + sources."widest-line-2.0.1" sources."win-release-1.1.1" (sources."wrap-ansi-2.1.0" // { dependencies = [ @@ -60981,7 +64338,7 @@ in ]; }) sources."yeoman-doctor-3.0.2" - (sources."yeoman-environment-2.3.3" // { + (sources."yeoman-environment-2.3.4" // { dependencies = [ sources."debug-3.2.6" sources."ms-2.1.1" diff --git a/pkgs/development/ocaml-modules/angstrom/default.nix b/pkgs/development/ocaml-modules/angstrom/default.nix index 0c00dc2ff24e10c9ab6c43f9d7a5c9f66119c970..2bb717168ad78f360fe1d077d40afe96ba8041d9 100644 --- a/pkgs/development/ocaml-modules/angstrom/default.nix +++ b/pkgs/development/ocaml-modules/angstrom/default.nix @@ -1,37 +1,26 @@ -{ stdenv, fetchFromGitHub, ocaml, findlib, dune, alcotest, result -, bigstringaf -}: +{ stdenv, fetchFromGitHub, buildDunePackage, alcotest, result, bigstringaf }: -if !stdenv.lib.versionAtLeast ocaml.version "4.03" -then throw "angstrom is not available for OCaml ${ocaml.version}" -else - -stdenv.mkDerivation rec { +buildDunePackage rec { + pname = "angstrom"; version = "0.10.0"; - name = "ocaml${ocaml.version}-angstrom-${version}"; + + minimumOCamlVersion = "4.03"; src = fetchFromGitHub { owner = "inhabitedtype"; - repo = "angstrom"; - rev = "${version}"; + repo = pname; + rev = version; sha256 = "0lh6024yf9ds0nh9i93r9m6p5psi8nvrqxl5x7jwl13zb0r9xfpw"; }; - buildInputs = [ ocaml findlib dune alcotest ]; + buildInputs = [ alcotest ]; propagatedBuildInputs = [ bigstringaf result ]; - - buildPhase = "dune build -p angstrom"; - doCheck = true; - checkPhase = "dune runtest -p angstrom"; - - inherit (dune) installPhase; meta = { homepage = https://github.com/inhabitedtype/angstrom; description = "OCaml parser combinators built for speed and memory efficiency"; license = stdenv.lib.licenses.bsd3; maintainers = with stdenv.lib.maintainers; [ sternenseemann ]; - inherit (ocaml.meta) platforms; }; } diff --git a/pkgs/development/ocaml-modules/astring/default.nix b/pkgs/development/ocaml-modules/astring/default.nix index 827487be69bf5fb880b3a02c037057589ad9d23b..f5dd92422cc17169e0cc0f4ad783cae331ac2974 100644 --- a/pkgs/development/ocaml-modules/astring/default.nix +++ b/pkgs/development/ocaml-modules/astring/default.nix @@ -9,8 +9,6 @@ stdenv.mkDerivation rec { sha256 = "0ixjwc3plrljvj24za3l9gy0w30lsbggp8yh02lwrzw61ls4cri0"; }; - unpackCmd = "tar -xf $curSrc"; - buildInputs = [ ocaml findlib ocamlbuild topkg ]; inherit (topkg) buildPhase installPhase; diff --git a/pkgs/development/ocaml-modules/atd/default.nix b/pkgs/development/ocaml-modules/atd/default.nix index d5cd38bba72841581f50ed5c27f2ec761a61e0ee..e3e056f54426f85b4e7176f31d946c7643438ea1 100644 --- a/pkgs/development/ocaml-modules/atd/default.nix +++ b/pkgs/development/ocaml-modules/atd/default.nix @@ -1,25 +1,21 @@ -{ stdenv, menhir, easy-format, ocaml, findlib, fetchFromGitHub, dune, which, biniou, yojson }: +{ stdenv, menhir, easy-format, fetchFromGitHub, buildDunePackage, which, biniou, yojson }: -stdenv.mkDerivation rec { +buildDunePackage rec { + pname = "atd"; version = "2.0.0"; - name = "ocaml${ocaml.version}-atd-${version}"; - src = fetchFromGitHub { owner = "mjambon"; - repo = "atd"; + repo = pname; rev = version; sha256 = "0alzmk97rxg7s6irs9lvf89dy9n3r769my5n4j9p9qyigcdgjaia"; }; createFindlibDestdir = true; - buildInputs = [ which dune ocaml findlib menhir ]; + buildInputs = [ which menhir ]; propagatedBuildInputs = [ easy-format biniou yojson ]; - buildPhase = "jbuilder build"; - inherit (dune) installPhase; - meta = with stdenv.lib; { homepage = https://github.com/mjambon/atd; description = "Syntax for cross-language type definitions"; diff --git a/pkgs/development/ocaml-modules/bigstringaf/default.nix b/pkgs/development/ocaml-modules/bigstringaf/default.nix index fc9a5379b178fe34102dbda8f4d9a07d67cbb60e..762e675d51ce3bf904c52d5055a68e7eda6f8d98 100644 --- a/pkgs/development/ocaml-modules/bigstringaf/default.nix +++ b/pkgs/development/ocaml-modules/bigstringaf/default.nix @@ -1,32 +1,25 @@ -{ stdenv, fetchFromGitHub, ocaml, findlib, dune, alcotest }: +{ stdenv, fetchFromGitHub, buildDunePackage, alcotest }: -if !stdenv.lib.versionAtLeast ocaml.version "4.03" -then throw "bigstringaf is not available for OCaml ${ocaml.version}" -else - -stdenv.mkDerivation rec { +buildDunePackage rec { + pname = "bigstringaf"; version = "0.3.0"; - name = "ocaml${ocaml.version}-bigstringaf-${version}"; + + minimumOCamlVersion = "4.03"; src = fetchFromGitHub { owner = "inhabitedtype"; - repo = "bigstringaf"; + repo = pname; rev = version; sha256 = "1yx6hv8rk0ldz1h6kk00rwg8abpfc376z00aifl9f5rn7xavpscs"; }; - buildInputs = [ ocaml findlib dune alcotest ]; - + buildInputs = [ alcotest ]; doCheck = true; - checkPhase = "dune runtest"; - - inherit (dune) installPhase; meta = { description = "Bigstring intrinsics and fast blits based on memcpy/memmove"; license = stdenv.lib.licenses.bsd3; maintainers = [ stdenv.lib.maintainers.vbgl ]; inherit (src.meta) homepage; - inherit (ocaml.meta) platforms; }; } diff --git a/pkgs/development/ocaml-modules/biniou/default.nix b/pkgs/development/ocaml-modules/biniou/default.nix index 439fce3bfd5b783f5a89364623f461f96203f5a7..8f1917d687387e7540a5a9021b673e2904d1ed00 100644 --- a/pkgs/development/ocaml-modules/biniou/default.nix +++ b/pkgs/development/ocaml-modules/biniou/default.nix @@ -1,28 +1,24 @@ -{ stdenv, fetchFromGitHub, ocaml, findlib, dune, easy-format }: +{ stdenv, fetchFromGitHub, buildDunePackage, easy-format }: -stdenv.mkDerivation rec { +buildDunePackage rec { + pname = "biniou"; version = "1.2.0"; - name = "ocaml${ocaml.version}-biniou-${version}"; + src = fetchFromGitHub { owner = "mjambon"; - repo = "biniou"; + repo = pname; rev = "v${version}"; sha256 = "0mjpgwyfq2b2izjw0flmlpvdjgqpq8shs89hxj1np2r50csr8dcb"; }; - buildInputs = [ ocaml findlib dune ]; - propagatedBuildInputs = [ easy-format ]; postPatch = '' patchShebangs . ''; - inherit (dune) installPhase; - meta = { inherit (src.meta) homepage; - inherit (ocaml.meta) platforms; description = "Binary data format designed for speed, safety, ease of use and backward compatibility as protocols evolve"; maintainers = [ stdenv.lib.maintainers.vbgl ]; license = stdenv.lib.licenses.bsd3; diff --git a/pkgs/development/ocaml-modules/bitstring/default.nix b/pkgs/development/ocaml-modules/bitstring/default.nix index 93bcb3cb1e99ae322fd593312af92b33449d6df8..3d1a554b3307ab9e8b54a7d46767def25f74e505 100644 --- a/pkgs/development/ocaml-modules/bitstring/default.nix +++ b/pkgs/development/ocaml-modules/bitstring/default.nix @@ -1,31 +1,22 @@ -{ stdenv, fetchFromGitHub, ocaml, findlib, dune -, ppx_tools_versioned -, ounit -}: +{ stdenv, fetchFromGitHub, buildDunePackage, ppx_tools_versioned, ounit }: -stdenv.mkDerivation rec { - name = "ocaml${ocaml.version}-bitstring-${version}"; +buildDunePackage rec { + pname = "bitstring"; version = "3.0.0"; + src = fetchFromGitHub { owner = "xguerin"; - repo = "bitstring"; + repo = pname; rev = "v${version}"; sha256 = "0r49qax7as48jgknzaq6p9rbpmrvnmlic713wzz5bj60j5h0396f"; }; - buildInputs = [ ocaml findlib dune ppx_tools_versioned ounit ]; - - buildPhase = "jbuilder build"; - + buildInputs = [ ppx_tools_versioned ounit ]; doCheck = true; - checkPhase = "jbuilder runtest"; - - inherit (dune) installPhase; meta = with stdenv.lib; { description = "This library adds Erlang-style bitstrings and matching over bitstrings as a syntax extension and library for OCaml"; homepage = https://github.com/xguerin/bitstring; - inherit (ocaml.meta) platforms; license = licenses.lgpl21Plus; maintainers = [ maintainers.maurer ]; }; diff --git a/pkgs/development/ocaml-modules/bos/default.nix b/pkgs/development/ocaml-modules/bos/default.nix index 3cb9b405d5a2ada4a73b3b593559ced0ce7b8a8b..974348116656f373d7d233206139e8112cbc82da 100644 --- a/pkgs/development/ocaml-modules/bos/default.nix +++ b/pkgs/development/ocaml-modules/bos/default.nix @@ -4,14 +4,12 @@ stdenv.mkDerivation rec { name = "ocaml${ocaml.version}-bos-${version}"; - version = "0.1.6"; + version = "0.2.0"; src = fetchurl { url = "http://erratique.ch/software/bos/releases/bos-${version}.tbz"; - sha256 = "1z9sbziqddf770y94pd0bffsp1wdr1v3kp2p00pr27adv7h7dgls"; + sha256 = "1s10iqx8rgnxr5n93lf4blwirjf8nlm272yg5sipr7lsr35v49wc"; }; - unpackCmd = "tar xjf $src"; - buildInputs = [ ocaml findlib ocamlbuild topkg ]; propagatedBuildInputs = [ astring fmt fpath logs rresult ]; diff --git a/pkgs/development/ocaml-modules/camlimages/default.nix b/pkgs/development/ocaml-modules/camlimages/default.nix index b5ef173c9ff8ea48ff5c0239e6860e15aa487d53..065c5a650b84896ea9389a79c32a37339788e01b 100644 --- a/pkgs/development/ocaml-modules/camlimages/default.nix +++ b/pkgs/development/ocaml-modules/camlimages/default.nix @@ -1,15 +1,16 @@ -{ stdenv, fetchzip, findlib, dune, ocaml, configurator, cppo, lablgtk }: -stdenv.mkDerivation rec { - name = "camlimages-${version}"; +{ stdenv, fetchzip, buildDunePackage, configurator, cppo, lablgtk }: + +buildDunePackage rec { + pname = "camlimages"; version = "5.0.0"; + src = fetchzip { - url = "https://bitbucket.org/camlspotter/camlimages/get/${version}.tar.gz"; + url = "https://bitbucket.org/camlspotter/${pname}/get/${version}.tar.gz"; sha256 = "00qvwxkfnhv93yi1iq7vy3p5lxyi9xigxcq464s4ii6bmp32d998"; }; - buildInputs = [ findlib dune ocaml configurator cppo lablgtk ]; - buildPhase = "dune build -p camlimages"; - inherit (dune) installPhase; - + + buildInputs = [ configurator cppo lablgtk ]; + meta = with stdenv.lib; { branch = "5.0"; homepage = https://bitbucket.org/camlspotter/camlimages; diff --git a/pkgs/development/ocaml-modules/camomile/default.nix b/pkgs/development/ocaml-modules/camomile/default.nix index 5e156776f860f0ce99fb0434a50f2886d78d49aa..f21e7643afe9e8b1ec607be3e3445690f43bbe15 100644 --- a/pkgs/development/ocaml-modules/camomile/default.nix +++ b/pkgs/development/ocaml-modules/camomile/default.nix @@ -1,24 +1,21 @@ -{ stdenv, fetchFromGitHub, ocaml, findlib, dune, cppo }: +{ stdenv, fetchFromGitHub, buildDunePackage, cppo }: -stdenv.mkDerivation rec { +buildDunePackage rec { + pname = "camomile"; version = "1.0.1"; - name = "ocaml${ocaml.version}-camomile-${version}"; src = fetchFromGitHub { owner = "yoriyuki"; - repo = "camomile"; - rev = "${version}"; + repo = pname; + rev = version; sha256 = "1pfxr9kzkpd5bsdqrpxasfxkawwkg4cpx3m1h6203sxi7qv1z3fn"; }; - buildInputs = [ ocaml findlib dune cppo ]; + buildInputs = [ cppo ]; configurePhase = "ocaml configure.ml --share $out/share/camomile"; - inherit (dune) installPhase; - meta = { - inherit (ocaml.meta) platforms; inherit (src.meta) homepage; maintainers = [ stdenv.lib.maintainers.vbgl ]; license = stdenv.lib.licenses.lgpl21; diff --git a/pkgs/development/ocaml-modules/cmdliner/default.nix b/pkgs/development/ocaml-modules/cmdliner/default.nix index 4b055a130fd2fc0f345ca8a504adc26447ebad66..9ba48e6ebfd2123ccd73179e1912cc43fda6dec9 100644 --- a/pkgs/development/ocaml-modules/cmdliner/default.nix +++ b/pkgs/development/ocaml-modules/cmdliner/default.nix @@ -15,8 +15,6 @@ stdenv.mkDerivation rec { sha256 = "18jqphjiifljlh9jg8zpl6310p3iwyaqphdkmf89acyaix0s4kj1"; }; - unpackCmd = "tar xjf $src"; - nativeBuildInputs = [ ocamlbuild topkg ]; buildInputs = [ ocaml findlib ]; propagatedBuildInputs = [ result ]; diff --git a/pkgs/development/ocaml-modules/cohttp/default.nix b/pkgs/development/ocaml-modules/cohttp/default.nix index 0508f2b74f75c4284007c3c3ec556cc6dbd51e18..0110ea0223cb3e61b96f97f22abf57aaa08b86ab 100644 --- a/pkgs/development/ocaml-modules/cohttp/default.nix +++ b/pkgs/development/ocaml-modules/cohttp/default.nix @@ -1,11 +1,11 @@ -{ stdenv, fetchFromGitHub, ocaml, findlib, dune +{ stdenv, fetchFromGitHub, buildDunePackage , ppx_fields_conv, ppx_sexp_conv, ppx_deriving , base64, fieldslib, jsonm, re, stringext, uri }: -stdenv.mkDerivation rec { +buildDunePackage rec { + pname = "cohttp"; version = "1.1.1"; - name = "ocaml${ocaml.version}-cohttp-${version}"; src = fetchFromGitHub { owner = "mirage"; @@ -14,19 +14,14 @@ stdenv.mkDerivation rec { sha256 = "1dzd6vy43b7p9xplzg2whylz5br59zxaqywa14b4l377f31gnwq1"; }; - buildInputs = [ ocaml findlib dune jsonm ppx_fields_conv ppx_sexp_conv ]; + buildInputs = [ jsonm ppx_fields_conv ppx_sexp_conv ]; propagatedBuildInputs = [ ppx_deriving base64 fieldslib re stringext uri ]; - buildPhase = "dune build -p cohttp"; - - inherit (dune) installPhase; - meta = { description = "HTTP(S) library for Lwt, Async and Mirage"; license = stdenv.lib.licenses.isc; maintainers = [ stdenv.lib.maintainers.vbgl ]; inherit (src.meta) homepage; - inherit (ocaml.meta) platforms; }; } diff --git a/pkgs/development/ocaml-modules/cohttp/lwt-unix.nix b/pkgs/development/ocaml-modules/cohttp/lwt-unix.nix index 6489a583198cde25821e90735a6dd0e129bca562..64a8f2416ad466649dd41bfcdc2cc32cd567b938 100644 --- a/pkgs/development/ocaml-modules/cohttp/lwt-unix.nix +++ b/pkgs/development/ocaml-modules/cohttp/lwt-unix.nix @@ -1,4 +1,4 @@ -{ stdenv, ocaml, findlib, dune, cohttp-lwt +{ stdenv, buildDunePackage, cohttp-lwt , conduit-lwt-unix, ppx_sexp_conv , cmdliner, fmt, magic-mime }: @@ -7,13 +7,11 @@ if !stdenv.lib.versionAtLeast cohttp-lwt.version "0.99" then cohttp-lwt else -stdenv.mkDerivation rec { - name = "ocaml${ocaml.version}-cohttp-lwt-unix-${version}"; - inherit (cohttp-lwt) version src installPhase meta; +buildDunePackage rec { + pname = "cohttp-lwt-unix"; + inherit (cohttp-lwt) version src meta; - buildInputs = [ ocaml findlib dune cmdliner ppx_sexp_conv ]; + buildInputs = [ cmdliner ppx_sexp_conv ]; propagatedBuildInputs = [ cohttp-lwt conduit-lwt-unix fmt magic-mime ]; - - buildPhase = "dune build -p cohttp-lwt-unix"; } diff --git a/pkgs/development/ocaml-modules/cohttp/lwt.nix b/pkgs/development/ocaml-modules/cohttp/lwt.nix index 741df5b06145978a06135912f42a859246dde3ff..37348c55262e94b2413478f626012f307c6d157a 100644 --- a/pkgs/development/ocaml-modules/cohttp/lwt.nix +++ b/pkgs/development/ocaml-modules/cohttp/lwt.nix @@ -1,16 +1,14 @@ -{ stdenv, ocaml, findlib, dune, cohttp, ocaml_lwt, uri, ppx_sexp_conv }: +{ stdenv, buildDunePackage, cohttp, ocaml_lwt, uri, ppx_sexp_conv }: if !stdenv.lib.versionAtLeast cohttp.version "0.99" then cohttp else -stdenv.mkDerivation rec { - name = "ocaml${ocaml.version}-cohttp-lwt-${version}"; - inherit (cohttp) version src installPhase meta; +buildDunePackage rec { + pname = "cohttp-lwt"; + inherit (cohttp) version src meta; - buildInputs = [ ocaml findlib dune uri ppx_sexp_conv ]; + buildInputs = [ uri ppx_sexp_conv ]; propagatedBuildInputs = [ cohttp ocaml_lwt ]; - - buildPhase = "dune build -p cohttp-lwt"; } diff --git a/pkgs/development/ocaml-modules/conduit/default.nix b/pkgs/development/ocaml-modules/conduit/default.nix index fdfd2bed1f15ff97341164c736514eae19c5a1f1..39234e86ef1c22c80357f82e40d367df7557eacf 100644 --- a/pkgs/development/ocaml-modules/conduit/default.nix +++ b/pkgs/development/ocaml-modules/conduit/default.nix @@ -1,11 +1,11 @@ -{ stdenv, fetchFromGitHub, ocaml, findlib, dune +{ stdenv, fetchFromGitHub, buildDunePackage , ppx_sexp_conv , astring, ipaddr, uri }: -stdenv.mkDerivation rec { +buildDunePackage rec { + pname = "conduit"; version = "1.0.0"; - name = "ocaml${ocaml.version}-conduit-${version}"; src = fetchFromGitHub { owner = "mirage"; @@ -14,18 +14,13 @@ stdenv.mkDerivation rec { sha256 = "1ryigzh7sfif1mly624fpm87aw5h60n5wzdlrvqsf71qcpxc6iiz"; }; - buildInputs = [ ocaml findlib dune ppx_sexp_conv ]; + buildInputs = [ ppx_sexp_conv ]; propagatedBuildInputs = [ astring ipaddr uri ]; - buildPhase = "dune build -p conduit"; - - inherit (dune) installPhase; - meta = { description = "Network connection library for TCP and SSL"; license = stdenv.lib.licenses.isc; maintainers = [ stdenv.lib.maintainers.vbgl ]; inherit (src.meta) homepage; - inherit (ocaml.meta) platforms; }; } diff --git a/pkgs/development/ocaml-modules/conduit/lwt-unix.nix b/pkgs/development/ocaml-modules/conduit/lwt-unix.nix index b4357979de753664e4246f068de39aa414669a56..b6d2e24ec551522811b5103779ad39380cedeb97 100644 --- a/pkgs/development/ocaml-modules/conduit/lwt-unix.nix +++ b/pkgs/development/ocaml-modules/conduit/lwt-unix.nix @@ -1,4 +1,4 @@ -{ stdenv, ocaml, findlib, dune, conduit-lwt +{ stdenv, buildDunePackage, conduit-lwt , logs, ppx_sexp_conv, lwt_ssl }: @@ -6,13 +6,11 @@ if !stdenv.lib.versionAtLeast conduit-lwt.version "1.0" then conduit-lwt else -stdenv.mkDerivation rec { - name = "ocaml${ocaml.version}-conduit-lwt-unix-${version}"; - inherit (conduit-lwt) version src installPhase meta; +buildDunePackage rec { + pname = "conduit-lwt-unix"; + inherit (conduit-lwt) version src meta; - buildInputs = [ ocaml findlib dune ppx_sexp_conv ]; + buildInputs = [ ppx_sexp_conv ]; propagatedBuildInputs = [ conduit-lwt logs lwt_ssl ]; - - buildPhase = "dune build -p conduit-lwt-unix"; } diff --git a/pkgs/development/ocaml-modules/conduit/lwt.nix b/pkgs/development/ocaml-modules/conduit/lwt.nix index 69d7132a83a43e47ed694a41a6f91d230a863e5e..560600e2fee8ae0ffe7d724343019647de32437b 100644 --- a/pkgs/development/ocaml-modules/conduit/lwt.nix +++ b/pkgs/development/ocaml-modules/conduit/lwt.nix @@ -1,16 +1,14 @@ -{ stdenv, ocaml, findlib, dune, ppx_sexp_conv, conduit, ocaml_lwt }: +{ stdenv, buildDunePackage, ppx_sexp_conv, conduit, ocaml_lwt }: if !stdenv.lib.versionAtLeast conduit.version "1.0" then conduit else -stdenv.mkDerivation rec { - name = "ocaml${ocaml.version}-conduit-lwt-${version}"; - inherit (conduit) version src installPhase meta; +buildDunePackage rec { + pname = "conduit-lwt"; + inherit (conduit) version src meta; - buildInputs = [ ocaml findlib dune ppx_sexp_conv ]; + buildInputs = [ ppx_sexp_conv ]; propagatedBuildInputs = [ conduit ocaml_lwt ]; - - buildPhase = "dune build -p conduit-lwt"; } diff --git a/pkgs/development/ocaml-modules/cpuid/default.nix b/pkgs/development/ocaml-modules/cpuid/default.nix index 37400856f1ae861fe05d01dd494aca7149c7abeb..0695da7ee37b34daebabebd1f3d14da5a2722762 100644 --- a/pkgs/development/ocaml-modules/cpuid/default.nix +++ b/pkgs/development/ocaml-modules/cpuid/default.nix @@ -8,8 +8,6 @@ stdenv.mkDerivation { sha256 = "08k2558a3dnxn8msgpz8c93sfn0y027ganfdi2yvql0fp1ixv97p"; }; - unpackCmd = "tar xjf $src"; - buildInputs = [ ocaml findlib ocamlbuild topkg ocb-stubblr ]; inherit (topkg) buildPhase installPhase; diff --git a/pkgs/development/ocaml-modules/cstruct/default.nix b/pkgs/development/ocaml-modules/cstruct/default.nix index 1a5a992f2be17977ae1a0628d36396aab1d51fbf..37c7f660ca6ba5f365d3ebf074af384a65e1ca02 100644 --- a/pkgs/development/ocaml-modules/cstruct/default.nix +++ b/pkgs/development/ocaml-modules/cstruct/default.nix @@ -1,28 +1,20 @@ -{ stdenv, fetchurl, ocaml, dune, findlib, sexplib, ocplib-endian }: +{ stdenv, fetchurl, buildDunePackage, sexplib, ocplib-endian }: -stdenv.mkDerivation rec { - name = "ocaml${ocaml.version}-cstruct-${version}"; +buildDunePackage rec { + pname = "cstruct"; version = "3.1.1"; + src = fetchurl { url = "https://github.com/mirage/ocaml-cstruct/releases/download/v${version}/cstruct-${version}.tbz"; sha256 = "1x4jxsvd1lrfibnjdjrkfl7hqsc48rljnwbap6faanj9qhwwa6v2"; }; - unpackCmd = "tar -xjf $curSrc"; - - buildInputs = [ ocaml dune findlib ]; - propagatedBuildInputs = [ sexplib ocplib-endian ]; - buildPhase = "dune build -p cstruct"; - - inherit (dune) installPhase; - meta = { description = "Access C-like structures directly from OCaml"; license = stdenv.lib.licenses.isc; homepage = "https://github.com/mirage/ocaml-cstruct"; maintainers = [ stdenv.lib.maintainers.vbgl ]; - inherit (ocaml.meta) platforms; }; } diff --git a/pkgs/development/ocaml-modules/cstruct/lwt.nix b/pkgs/development/ocaml-modules/cstruct/lwt.nix index 065716e68529f6c28616b50920afb4afb7080c41..fc621838966295abce82fd90239b04d5affde64d 100644 --- a/pkgs/development/ocaml-modules/cstruct/lwt.nix +++ b/pkgs/development/ocaml-modules/cstruct/lwt.nix @@ -1,12 +1,10 @@ -{ stdenv, ocaml, cstruct, lwt }: +{ buildDunePackage, cstruct, lwt }: -assert stdenv.lib.versionAtLeast ocaml.version "4.02"; +buildDunePackage { + pname = "cstruct-lwt"; + inherit (cstruct) version src meta; -stdenv.mkDerivation rec { - name = "ocaml${ocaml.version}-cstruct-lwt-${version}"; - inherit (cstruct) version src unpackCmd buildInputs installPhase meta; + minimumOCamlVersion = "4.02"; propagatedBuildInputs = [ cstruct lwt ]; - - buildPhase = "${cstruct.buildPhase}-lwt"; } diff --git a/pkgs/development/ocaml-modules/cstruct/ppx.nix b/pkgs/development/ocaml-modules/cstruct/ppx.nix index 1696e200750c3782845d4dc351ab11a0f558938f..5f4130dc23f2198d1f6df26f2678cc98a1ea9b26 100644 --- a/pkgs/development/ocaml-modules/cstruct/ppx.nix +++ b/pkgs/development/ocaml-modules/cstruct/ppx.nix @@ -1,13 +1,11 @@ -{ stdenv, ocaml, cstruct, ppx_tools_versioned }: +{ buildDunePackage, cstruct, ppx_tools_versioned }: -assert stdenv.lib.versionAtLeast ocaml.version "4.02"; +buildDunePackage { + pname = "ppx_cstruct"; + inherit (cstruct) version src meta; -stdenv.mkDerivation rec { - name = "ocaml${ocaml.version}-ppx_cstruct-${version}"; - inherit (cstruct) version src unpackCmd installPhase meta; + minimumOCamlVersion = "4.02"; - buildInputs = cstruct.buildInputs ++ [ ppx_tools_versioned ]; + buildInputs = [ ppx_tools_versioned ]; propagatedBuildInputs = [ cstruct ]; - - buildPhase = "dune build -p ppx_cstruct"; } diff --git a/pkgs/development/ocaml-modules/cstruct/unix.nix b/pkgs/development/ocaml-modules/cstruct/unix.nix index 2a614579fccc1d3d2b086e519252e8612ce84434..fb7612b5f05e95cba373f22d49a77bf4d5b06f39 100644 --- a/pkgs/development/ocaml-modules/cstruct/unix.nix +++ b/pkgs/development/ocaml-modules/cstruct/unix.nix @@ -1,12 +1,10 @@ -{ stdenv, ocaml, cstruct }: +{ buildDunePackage, cstruct }: -assert stdenv.lib.versionAtLeast ocaml.version "4.02"; +buildDunePackage { + pname = "cstruct-unix"; + inherit (cstruct) version src meta; -stdenv.mkDerivation rec { - name = "ocaml${ocaml.version}-cstruct-unix-${version}"; - inherit (cstruct) version src unpackCmd buildInputs installPhase meta; + minimumOCamlVersion = "4.02"; propagatedBuildInputs = [ cstruct ]; - - buildPhase = "${cstruct.buildPhase}-unix"; } diff --git a/pkgs/development/ocaml-modules/csv/default.nix b/pkgs/development/ocaml-modules/csv/default.nix index 6c6f8a68f8141104c0c8c68bdfaea90299946a6a..e10b21286ddff5102aa0637cf545017cebbcdd6e 100644 --- a/pkgs/development/ocaml-modules/csv/default.nix +++ b/pkgs/development/ocaml-modules/csv/default.nix @@ -1,26 +1,18 @@ -{ stdenv, fetchurl, ocaml, findlib, dune }: +{ stdenv, fetchurl, buildDunePackage }: -stdenv.mkDerivation rec { +buildDunePackage rec { + pname = "csv"; version = "2.1"; - name = "ocaml${ocaml.version}-csv-${version}"; + src = fetchurl { - url = "https://github.com/Chris00/ocaml-csv/releases/download/2.1/csv-2.1.tbz"; + url = "https://github.com/Chris00/ocaml-${pname}/releases/download/${version}/csv-${version}.tbz"; sha256 = "0cgfb6cwhwy7ypc1i3jyfz6sdnykp75aqi6kk0g1a2d81yjwzbcg"; }; - unpackCmd = "tar -xjf $src"; - - buildInputs = [ ocaml findlib dune ]; - - buildPhase = "dune build -p csv"; - - inherit (dune) installPhase; - meta = { description = "A pure OCaml library to read and write CSV files"; license = stdenv.lib.licenses.lgpl21; maintainers = [ stdenv.lib.maintainers.vbgl ]; homepage = https://github.com/Chris00/ocaml-csv; - inherit (ocaml.meta) platforms; }; } diff --git a/pkgs/development/ocaml-modules/digestif/default.nix b/pkgs/development/ocaml-modules/digestif/default.nix index cf8b5335d594f061ad9385e36017ce208c481bb3..d8089bb533f04b606096281e2e905ff1971096be 100644 --- a/pkgs/development/ocaml-modules/digestif/default.nix +++ b/pkgs/development/ocaml-modules/digestif/default.nix @@ -13,8 +13,6 @@ stdenv.mkDerivation rec { sha256 = "0fsyfi5ps17j3wjav5176gf6z3a5xcw9aqhcr1gml9n9ayfbkhrd"; }; - unpackCmd = "tar -xjf $curSrc"; - buildInputs = [ ocaml findlib ocamlbuild topkg ]; inherit (topkg) buildPhase installPhase; diff --git a/pkgs/development/ocaml-modules/doc-ock-html/default.nix b/pkgs/development/ocaml-modules/doc-ock-html/default.nix index cb2756b0977c4558f74a3e4488d6fe5a393bb44c..cd2e2761b50362931a5363f5c81f4a3c8473ec8e 100644 --- a/pkgs/development/ocaml-modules/doc-ock-html/default.nix +++ b/pkgs/development/ocaml-modules/doc-ock-html/default.nix @@ -1,27 +1,22 @@ -{ stdenv, fetchFromGitHub, ocaml, findlib, dune, doc-ock, tyxml, xmlm }: +{ stdenv, fetchFromGitHub, buildDunePackage, doc-ock, tyxml, xmlm }: -stdenv.mkDerivation rec { - name = "ocaml${ocaml.version}-doc-ock-html-${version}"; +buildDunePackage rec { + pname = "doc-ock-html"; version = "1.2.1"; src = fetchFromGitHub { owner = "ocaml-doc"; - repo = "doc-ock-html"; + repo = pname; rev = "v${version}"; sha256 = "1y620h48qrplmcm78g7c78zibpkai4j3icwmnx95zb3r8xq8554y"; }; - buildInputs = [ ocaml findlib dune ]; - propagatedBuildInputs = [ doc-ock tyxml xmlm ]; - inherit (dune) installPhase; - meta = { description = "From doc-ock to HTML"; license = stdenv.lib.licenses.isc; maintainers = [ stdenv.lib.maintainers.vbgl ]; - inherit (ocaml.meta) platforms; inherit (src.meta) homepage; }; } diff --git a/pkgs/development/ocaml-modules/doc-ock-xml/default.nix b/pkgs/development/ocaml-modules/doc-ock-xml/default.nix index 72e562cb5f360fc51c20e4310621c5f3b1eb38bd..cebf7707788d8a20d9b828546d4eea6973d1dede 100644 --- a/pkgs/development/ocaml-modules/doc-ock-xml/default.nix +++ b/pkgs/development/ocaml-modules/doc-ock-xml/default.nix @@ -1,27 +1,22 @@ -{ stdenv, fetchFromGitHub, ocaml, findlib, dune, doc-ock, menhir, xmlm }: +{ stdenv, fetchFromGitHub, buildDunePackage, doc-ock, menhir, xmlm }: -stdenv.mkDerivation rec { - name = "ocaml${ocaml.version}-doc-ock-xml-${version}"; +buildDunePackage rec { + pname = "doc-ock-xml"; version = "1.2.1"; src = fetchFromGitHub { owner = "ocaml-doc"; - repo = "doc-ock-xml"; + repo = pname; rev = "v${version}"; sha256 = "1s27ri7vj9ixi5p5ixg6g6invk96807bvxbqjrr1dm8sxgl1nd20"; }; - buildInputs = [ ocaml findlib dune ]; - propagatedBuildInputs = [ doc-ock menhir xmlm ]; - inherit (dune) installPhase; - meta = { description = "XML printer and parser for Doc-Ock"; license = stdenv.lib.licenses.isc; maintainers = [ stdenv.lib.maintainers.vbgl ]; - inherit (ocaml.meta) platforms; inherit (src.meta) homepage; }; } diff --git a/pkgs/development/ocaml-modules/doc-ock/default.nix b/pkgs/development/ocaml-modules/doc-ock/default.nix index c158f08b0687d408fa9727d7c316a9fc17f26387..ff42c93e5c1c7ca6000a1e94494defd86100aacf 100644 --- a/pkgs/development/ocaml-modules/doc-ock/default.nix +++ b/pkgs/development/ocaml-modules/doc-ock/default.nix @@ -1,27 +1,24 @@ -{ stdenv, fetchFromGitHub, ocaml, findlib, dune, octavius, cppo }: +{ stdenv, fetchFromGitHub, buildDunePackage, octavius, cppo }: -stdenv.mkDerivation rec { - name = "ocaml${ocaml.version}-doc-ock-${version}"; +buildDunePackage rec { + pname = "doc-ock"; version = "1.2.1"; src = fetchFromGitHub { owner = "ocaml-doc"; - repo = "doc-ock"; + repo = pname; rev = "v${version}"; sha256 = "090vprm12jrl55yllk1hdzbsqyr107yjs2qnc49yahdhvnr4h5b7"; }; - buildInputs = [ ocaml findlib dune cppo ]; + buildInputs = [ cppo ]; propagatedBuildInputs = [ octavius ]; - inherit (dune) installPhase; - meta = { description = "Extract documentation from OCaml files"; license = stdenv.lib.licenses.isc; maintainers = [ stdenv.lib.maintainers.vbgl ]; - inherit (ocaml.meta) platforms; inherit (src.meta) homepage; }; } diff --git a/pkgs/development/ocaml-modules/dtoa/default.nix b/pkgs/development/ocaml-modules/dtoa/default.nix index a76e0c61450b6f87319e2bdb1de9f684804fbd78..a5164ab7fa9b1b22e04b73ed7336d8b7118bda74 100644 --- a/pkgs/development/ocaml-modules/dtoa/default.nix +++ b/pkgs/development/ocaml-modules/dtoa/default.nix @@ -1,32 +1,22 @@ -{ stdenv, fetchurl, ocaml, findlib, dune }: +{ stdenv, fetchurl, buildDunePackage }: -assert stdenv.lib.versionAtLeast (stdenv.lib.getVersion ocaml) "4.01"; - -stdenv.mkDerivation rec { +buildDunePackage rec { pname = "dtoa"; - name = "ocaml-${pname}-${version}"; version = "0.3.1"; + minimumOCamlVersion = "4.01"; + src = fetchurl { url = "https://github.com/flowtype/ocaml-${pname}/releases/download/v${version}/${pname}-${version}.tbz"; sha256 = "0rzysj07z2q6gk0yhjxnjnba01vmdb9x32wwna10qk3rrb8r2pnn"; }; - unpackCmd = "tar xjf $src"; - - buildInputs = [ ocaml findlib dune ]; - - buildPhase = "dune build -p dtoa"; - - inherit (dune) installPhase; - hardeningDisable = stdenv.lib.optional stdenv.isDarwin "strictoverflow"; meta = with stdenv.lib; { homepage = https://github.com/flowtype/ocaml-dtoa; description = "Converts OCaml floats into strings (doubles to ascii, \"d to a\"), using the efficient Grisu3 algorithm."; license = licenses.mit; - platforms = ocaml.meta.platforms or []; maintainers = [ maintainers.eqyiel ]; }; } diff --git a/pkgs/development/ocaml-modules/ezjsonm/default.nix b/pkgs/development/ocaml-modules/ezjsonm/default.nix index d38cf51c1531c0b3a1eab31f4137b83b4265a4d2..fc1936c2b4738d51351b490722a04fe6988771ba 100644 --- a/pkgs/development/ocaml-modules/ezjsonm/default.nix +++ b/pkgs/development/ocaml-modules/ezjsonm/default.nix @@ -1,27 +1,20 @@ -{ stdenv, fetchzip, ocaml, findlib, dune, jsonm, hex, sexplib }: +{ stdenv, fetchzip, buildDunePackage, jsonm, hex, sexplib }: -let version = "0.6.0"; in - -stdenv.mkDerivation { - name = "ocaml${ocaml.version}-ezjsonm-${version}"; +buildDunePackage rec { + pname = "ezjsonm"; + version = "0.6.0"; src = fetchzip { - url = "https://github.com/mirage/ezjsonm/archive/${version}.tar.gz"; + url = "https://github.com/mirage/${pname}/archive/${version}.tar.gz"; sha256 = "18g64lhai0bz65b9fil12vlgfpwa9b5apj7x6d7n4zzm18qfazvj"; }; - buildInputs = [ ocaml findlib dune ]; propagatedBuildInputs = [ jsonm hex sexplib ]; - buildPhase = "dune build -p ezjsonm"; - - inherit (dune) installPhase; - meta = { description = "An easy interface on top of the Jsonm library"; homepage = https://github.com/mirage/ezjsonm; license = stdenv.lib.licenses.isc; maintainers = with stdenv.lib.maintainers; [ vbgl ]; - platforms = ocaml.meta.platforms or []; }; } diff --git a/pkgs/development/ocaml-modules/ezxmlm/default.nix b/pkgs/development/ocaml-modules/ezxmlm/default.nix index d40c47dd7a40abb6c5d5daafe648aaabf428b4d6..1740bd77fdb2dd72c7507bf9306d1a9781546e5b 100644 --- a/pkgs/development/ocaml-modules/ezxmlm/default.nix +++ b/pkgs/development/ocaml-modules/ezxmlm/default.nix @@ -1,24 +1,18 @@ -{ stdenv, fetchFromGitHub, ocaml, findlib, dune, xmlm }: +{ stdenv, fetchFromGitHub, buildDunePackage, xmlm }: -stdenv.mkDerivation rec { +buildDunePackage rec { + pname = "ezxmlm"; version = "1.0.2"; - name = "ocaml${ocaml.version}-ezxmlm-${version}"; src = fetchFromGitHub { owner = "avsm"; - repo = "ezxmlm"; + repo = pname; rev = "v${version}"; sha256 = "1dgr61f0hymywikn67inq908x5adrzl3fjx3v14l9k46x7kkacl9"; }; propagatedBuildInputs = [ xmlm ]; - buildInputs = [ ocaml findlib dune ]; - - buildFlags = "build"; - - inherit (dune) installPhase; - meta = with stdenv.lib; { description = "Combinators to use with xmlm for parsing and selection"; longDescription = '' @@ -34,7 +28,6 @@ stdenv.mkDerivation rec { ''; maintainers = [ maintainers.carlosdagos ]; inherit (src.meta) homepage; - inherit (ocaml.meta) platforms; license = licenses.isc; }; } diff --git a/pkgs/development/ocaml-modules/faraday/default.nix b/pkgs/development/ocaml-modules/faraday/default.nix index 6af808654f530bc32abec26884752b401f1a2089..34c8fcbfcbcd0cc453f82c30dbe7f9f73a914eac 100644 --- a/pkgs/development/ocaml-modules/faraday/default.nix +++ b/pkgs/development/ocaml-modules/faraday/default.nix @@ -1,34 +1,25 @@ -{ stdenv, fetchFromGitHub, ocaml, findlib, dune, alcotest }: +{ stdenv, fetchFromGitHub, buildDunePackage, alcotest }: -if !stdenv.lib.versionAtLeast ocaml.version "4.02" -then throw "faraday is not available for OCaml ${ocaml.version}" -else - -stdenv.mkDerivation rec { - name = "ocaml${ocaml.version}-faraday-${version}"; +buildDunePackage rec { + pname = "faraday"; version = "0.5.0"; + minimumOCamlVersion = "4.02"; + src = fetchFromGitHub { owner = "inhabitedtype"; - repo = "faraday"; + repo = pname; rev = version; sha256 = "1kql0il1frsbx6rvwqd7ahi4m14ik6la5an6c2w4x7k00ndm4d7n"; }; - buildInputs = [ ocaml findlib dune alcotest ]; - - buildPhase = "dune build -p faraday"; - + buildInputs = [ alcotest ]; doCheck = true; - checkPhase = "jbuilder runtest"; - - inherit (dune) installPhase; meta = { description = "Serialization library built for speed and memory efficiency"; license = stdenv.lib.licenses.bsd3; maintainers = [ stdenv.lib.maintainers.vbgl ]; inherit (src.meta) homepage; - inherit (ocaml.meta) platforms; }; } diff --git a/pkgs/development/ocaml-modules/farfadet/default.nix b/pkgs/development/ocaml-modules/farfadet/default.nix index 080cc74998df7a789ac73a3dd63b2ca4a9b99f60..20b6f7d0909eb8c77674c07cad6f5fc9bd04527b 100644 --- a/pkgs/development/ocaml-modules/farfadet/default.nix +++ b/pkgs/development/ocaml-modules/farfadet/default.nix @@ -15,8 +15,6 @@ stdenv.mkDerivation rec { sha256 = "06wvd57c8khpq0c2hvm15zng269zvabsw1lcaqphqdcckl67nsxr"; }; - unpackCmd = "tar -xjf $curSrc"; - buildInputs = [ ocaml findlib ocamlbuild topkg ]; propagatedBuildInputs = [ faraday ]; @@ -31,4 +29,3 @@ stdenv.mkDerivation rec { inherit (ocaml.meta) platforms; }; } - diff --git a/pkgs/development/ocaml-modules/fmt/default.nix b/pkgs/development/ocaml-modules/fmt/default.nix index 2aa560e5349b68f1b98ec36d05f9154faf695389..922f85996e14eec546d40c32a69c184b1fe5e837 100644 --- a/pkgs/development/ocaml-modules/fmt/default.nix +++ b/pkgs/development/ocaml-modules/fmt/default.nix @@ -8,8 +8,6 @@ stdenv.mkDerivation { sha256 = "1zj9azcxcn6skmb69ykgmi9z8c50yskwg03wqgh87lypgjdcz060"; }; - unpackCmd = "tar xjf $src"; - buildInputs = [ ocaml findlib ocamlbuild topkg cmdliner ]; propagatedBuildInputs = [ result uchar ]; diff --git a/pkgs/development/ocaml-modules/fpath/default.nix b/pkgs/development/ocaml-modules/fpath/default.nix index f812ab1d48c008b897ee7491547ee3c3f49ab3b2..9317f50717e243d2e709d19aa94fd74c5c9d5f67 100644 --- a/pkgs/development/ocaml-modules/fpath/default.nix +++ b/pkgs/development/ocaml-modules/fpath/default.nix @@ -7,8 +7,6 @@ stdenv.mkDerivation { sha256 = "1hr05d8bpqmqcfdavn4rjk9rxr7v2zl84866f5knjifrm60sxqic"; }; - unpackCmd = "tar xjf $src"; - buildInputs = [ ocaml findlib ocamlbuild topkg ]; propagatedBuildInputs = [ astring ]; diff --git a/pkgs/development/ocaml-modules/functoria/default.nix b/pkgs/development/ocaml-modules/functoria/default.nix index 150d8db16a04c2ab731b897b92f84f4bf26450eb..12b24a43956c5a2e6fc5b33f17c393a1c038e402 100644 --- a/pkgs/development/ocaml-modules/functoria/default.nix +++ b/pkgs/development/ocaml-modules/functoria/default.nix @@ -13,8 +13,6 @@ stdenv.mkDerivation rec { sha256 = "019rl4rir4lwgjyqj2wq3ylw4daih1kxxgbc6ld6kzcq66mwr747"; }; - unpackCmd = "tar xjf $src"; - buildInputs = [ ocaml findlib ocamlbuild topkg ]; propagatedBuildInputs = [ bos cmdliner ocamlgraph ]; diff --git a/pkgs/development/ocaml-modules/gapi-ocaml/default.nix b/pkgs/development/ocaml-modules/gapi-ocaml/default.nix index bf7418ab27ebd586a30db7830f351c9bd62f2055..25f5e35492b2e40b3a3ae5b36a483c3f727d042c 100644 --- a/pkgs/development/ocaml-modules/gapi-ocaml/default.nix +++ b/pkgs/development/ocaml-modules/gapi-ocaml/default.nix @@ -1,28 +1,24 @@ -{ stdenv, fetchFromGitHub, ocaml, findlib, dune, ocurl, cryptokit, ocaml_extlib, yojson, ocamlnet, xmlm }: +{ stdenv, fetchFromGitHub, buildDunePackage, ocurl, cryptokit, ocaml_extlib, yojson, ocamlnet, xmlm }: -if !stdenv.lib.versionAtLeast ocaml.version "4.02" -then throw "gapi-ocaml is not available for OCaml ${ocaml.version}" -else - -stdenv.mkDerivation rec { - name = "gapi-ocaml-${version}"; +buildDunePackage rec { + pname = "gapi-ocaml"; version = "0.3.6"; + + minimumOCamlVersion = "4.02"; + src = fetchFromGitHub { owner = "astrada"; - repo = "gapi-ocaml"; + repo = pname; rev = "v${version}"; sha256 = "0qgsy51bhkpfgl5rdnjw4bqs5fbh2w4vwrfbl8y3lh1wrqmnwci4"; }; - buildInputs = [ ocaml dune findlib ]; - propagatedBuildInputs = [ ocurl cryptokit ocaml_extlib yojson ocamlnet xmlm ]; - inherit (dune) installPhase; + propagatedBuildInputs = [ ocurl cryptokit ocaml_extlib yojson ocamlnet xmlm ]; meta = { description = "OCaml client for google services"; homepage = http://gapi-ocaml.forge.ocamlcore.org; license = stdenv.lib.licenses.mit; maintainers = with stdenv.lib.maintainers; [ bennofs ]; - platforms = ocaml.meta.platforms or []; }; } diff --git a/pkgs/development/ocaml-modules/gg/default.nix b/pkgs/development/ocaml-modules/gg/default.nix index 0c80f39d9d7d68be4f5815d2c030e360bd5f74bd..e32611e0c05fce7fc0c102e0b80b1c98f6bcf9ef 100644 --- a/pkgs/development/ocaml-modules/gg/default.nix +++ b/pkgs/development/ocaml-modules/gg/default.nix @@ -23,8 +23,6 @@ stdenv.mkDerivation rec { createFindlibDestdir = true; - unpackCmd = "tar xjf $src"; - buildPhase = "ocaml pkg/build.ml native=true native-dynlink=true"; installPhase = "opaline -libdir $OCAMLFIND_DESTDIR"; diff --git a/pkgs/development/ocaml-modules/git-http/default.nix b/pkgs/development/ocaml-modules/git-http/default.nix index c6abb0171b036d5c5fe0e31929d4a0f251906978..0869ae659cc3f1f3f43b0dba3754c7bff2351088 100644 --- a/pkgs/development/ocaml-modules/git-http/default.nix +++ b/pkgs/development/ocaml-modules/git-http/default.nix @@ -1,24 +1,15 @@ -{ stdenv, ocaml, findlib, dune, git, cohttp-lwt -, alcotest, mtime, nocrypto -}: +{ buildDunePackage, git, cohttp-lwt, alcotest, mtime, nocrypto }: -stdenv.mkDerivation rec { - name = "ocaml${ocaml.version}-git-http-${version}"; +buildDunePackage rec { + pname = "git-http"; inherit (git) version src; - buildInputs = [ ocaml findlib dune alcotest mtime nocrypto ]; - + buildInputs = [ alcotest mtime nocrypto ]; propagatedBuildInputs = [ git cohttp-lwt ]; - - buildPhase = "dune build -p git-http"; - - inherit (dune) installPhase; - doCheck = true; - checkPhase = "dune runtest -p git-http"; meta = { description = "Client implementation of the “Smart” HTTP Git protocol in pure OCaml"; - inherit (git.meta) homepage license maintainers platforms; + inherit (git.meta) homepage license maintainers; }; } diff --git a/pkgs/development/ocaml-modules/git-unix/default.nix b/pkgs/development/ocaml-modules/git-unix/default.nix index 7a796ca089d548ebf8a677e8f1dcfca483ae12a7..9c8a7c48255f430c04ec7bfa753533df9fb1d753 100644 --- a/pkgs/development/ocaml-modules/git-unix/default.nix +++ b/pkgs/development/ocaml-modules/git-unix/default.nix @@ -1,22 +1,14 @@ -{ stdenv, ocaml, findlib, dune, git-http -, cohttp-lwt-unix -, tls, cmdliner, mtime -}: +{ buildDunePackage, git-http, cohttp-lwt-unix, tls, cmdliner, mtime }: -stdenv.mkDerivation rec { - name = "ocaml${ocaml.version}-git-unix-${version}"; +buildDunePackage rec { + pname = "git-unix"; inherit (git-http) version src; - buildInputs = [ ocaml findlib dune cmdliner mtime ]; - + buildInputs = [ cmdliner mtime ]; propagatedBuildInputs = [ cohttp-lwt-unix git-http tls ]; - buildPhase = "dune build -p git-unix"; - - inherit (dune) installPhase; - meta = { description = "Unix backend for the Git protocol(s)"; - inherit (git-http.meta) homepage license maintainers platforms; + inherit (git-http.meta) homepage license maintainers; }; } diff --git a/pkgs/development/ocaml-modules/git/default.nix b/pkgs/development/ocaml-modules/git/default.nix index 777184ed2e94a1afaafaae2f96e3b13e589ef1a4..944195fd0a3e39fb74562862f0e93d1e12ff2aa8 100644 --- a/pkgs/development/ocaml-modules/git/default.nix +++ b/pkgs/development/ocaml-modules/git/default.nix @@ -1,11 +1,11 @@ -{ stdenv, fetchFromGitHub, ocaml, findlib, dune +{ stdenv, fetchFromGitHub, buildDunePackage , astring, decompress, fmt, hex, logs, mstruct, ocaml_lwt, ocamlgraph, uri , alcotest, mtime, nocrypto }: -stdenv.mkDerivation rec { +buildDunePackage rec { + pname = "git"; version = "1.11.5"; - name = "ocaml${ocaml.version}-git-${version}"; src = fetchFromGitHub { owner = "mirage"; @@ -14,22 +14,14 @@ stdenv.mkDerivation rec { sha256 = "0r1bxpxjjnl9hh8xbabsxl7svzvd19hfy73a2y1m4kljmw64dpfh"; }; - buildInputs = [ ocaml findlib dune alcotest mtime nocrypto ]; - + buildInputs = [ alcotest mtime nocrypto ]; propagatedBuildInputs = [ astring decompress fmt hex logs mstruct ocaml_lwt ocamlgraph uri ]; - - buildPhase = "dune build -p git"; - - inherit (dune) installPhase; - doCheck = true; - checkPhase = "dune runtest -p git"; meta = { description = "Git format and protocol in pure OCaml"; license = stdenv.lib.licenses.isc; maintainers = [ stdenv.lib.maintainers.vbgl ]; inherit (src.meta) homepage; - inherit (ocaml.meta) platforms; }; } diff --git a/pkgs/development/ocaml-modules/hex/default.nix b/pkgs/development/ocaml-modules/hex/default.nix index 71a9ebf9ad5ddaaa07e5b9da455748dc0f6d8a60..172eecbe29db79c926243a590e42e7154f858871 100644 --- a/pkgs/development/ocaml-modules/hex/default.nix +++ b/pkgs/development/ocaml-modules/hex/default.nix @@ -1,34 +1,23 @@ -{ stdenv, fetchurl, ocaml, findlib, dune, cstruct }: +{ stdenv, fetchurl, buildDunePackage, cstruct }: -if !stdenv.lib.versionAtLeast ocaml.version "4.02" -then throw "hex is not available for OCaml ${ocaml.version}" -else +buildDunePackage rec { + pname = "hex"; + version = "1.2.0"; -let version = "1.2.0"; in - -stdenv.mkDerivation { - name = "ocaml${ocaml.version}-hex-${version}"; + minimumOCamlVersion = "4.02"; src = fetchurl { - url = "https://github.com/mirage/ocaml-hex/releases/download/v1.2.0/hex-1.2.0.tbz"; + url = "https://github.com/mirage/ocaml-${pname}/releases/download/v${version}/hex-${version}.tbz"; sha256 = "17hqf7z5afp2z2c55fk5myxkm7cm74259rqm94hcxkqlpdaqhm8h"; }; - unpackCmd = "tar -xjf $curSrc"; - - buildInputs = [ ocaml findlib dune ]; propagatedBuildInputs = [ cstruct ]; - - buildPhase = "dune build -p hex"; doCheck = true; - checkPhase = "jbuilder runtest"; - inherit (dune) installPhase; meta = { description = "Mininal OCaml library providing hexadecimal converters"; homepage = https://github.com/mirage/ocaml-hex; license = stdenv.lib.licenses.isc; maintainers = with stdenv.lib.maintainers; [ vbgl ]; - platforms = ocaml.meta.platforms or []; }; } diff --git a/pkgs/development/ocaml-modules/httpaf/default.nix b/pkgs/development/ocaml-modules/httpaf/default.nix index e8638e4cf184f4d22434d9047d8ec242b25fbe51..bec4f947ce30cd120f8c7d5f6aee7bd61ea589b2 100644 --- a/pkgs/development/ocaml-modules/httpaf/default.nix +++ b/pkgs/development/ocaml-modules/httpaf/default.nix @@ -1,33 +1,24 @@ -{ stdenv, fetchFromGitHub, ocaml, findlib, dune -, angstrom, faraday, alcotest -}: +{ stdenv, fetchFromGitHub, buildDunePackage, angstrom, faraday, alcotest }: -stdenv.mkDerivation rec { +buildDunePackage rec { + pname = "httpaf"; version = "0.4.1"; - name = "ocaml${ocaml.version}-httpaf-${version}"; src = fetchFromGitHub { owner = "inhabitedtype"; - repo = "httpaf"; + repo = pname; rev = version; sha256 = "0i2r004ihj00hd97475y8nhjqjln58xx087zcjl0dfp0n7q80517"; }; - buildInputs = [ ocaml findlib dune alcotest ]; + buildInputs = [ alcotest ]; propagatedBuildInputs = [ angstrom faraday ]; - - buildPhase = "dune build -p httpaf"; - doCheck = true; - checkPhase = "dune runtest -p httpaf"; - - inherit (dune) installPhase; meta = { description = "A high-performance, memory-efficient, and scalable web server for OCaml"; license = stdenv.lib.licenses.bsd3; maintainers = [ stdenv.lib.maintainers.vbgl ]; inherit (src.meta) homepage; - inherit (ocaml.meta) platforms; }; } diff --git a/pkgs/development/ocaml-modules/integers/default.nix b/pkgs/development/ocaml-modules/integers/default.nix index f7d22baf3e9ec0af9ee5cc7509b9c10f9aae304e..bf2d2dd1e8b189bf79810b5eab79156fd138cb32 100644 --- a/pkgs/development/ocaml-modules/integers/default.nix +++ b/pkgs/development/ocaml-modules/integers/default.nix @@ -8,8 +8,6 @@ stdenv.mkDerivation { sha256 = "08b1ljw88ny3l0mdq6xmffjk8anfc77igryva5jz1p6f4f746ywk"; }; - unpackCmd = "tar xjf $src"; - buildInputs = [ ocaml findlib ocamlbuild topkg ]; inherit (topkg) buildPhase installPhase; diff --git a/pkgs/development/ocaml-modules/io-page/default.nix b/pkgs/development/ocaml-modules/io-page/default.nix index 7c3d3a20c4d7c47cd10b390d74019e7d25bb368b..e0f024569626141d9f5951e9c86ea8812f148b10 100644 --- a/pkgs/development/ocaml-modules/io-page/default.nix +++ b/pkgs/development/ocaml-modules/io-page/default.nix @@ -1,23 +1,19 @@ -{ stdenv, fetchzip, ocaml, findlib, dune, configurator, cstruct }: +{ stdenv, fetchzip, buildDunePackage, configurator, cstruct }: -let version = "2.0.1"; in - -stdenv.mkDerivation { - name = "ocaml${ocaml.version}-io-page-${version}"; +buildDunePackage rec { + pname = "io-page"; + version = "2.0.1"; src = fetchzip { - url = "https://github.com/mirage/io-page/archive/${version}.tar.gz"; + url = "https://github.com/mirage/${pname}/archive/${version}.tar.gz"; sha256 = "1rw04dwrlx5hah5dkjf7d63iff82j9cifr8ifjis5pdwhgwcff8i"; }; - buildInputs = [ ocaml findlib dune configurator ]; + buildInputs = [ configurator ]; propagatedBuildInputs = [ cstruct ]; - inherit (dune) installPhase; - meta = { homepage = https://github.com/mirage/io-page; - inherit (ocaml.meta) platforms; license = stdenv.lib.licenses.isc; description = "IO memory page library for Mirage backends"; maintainers = with stdenv.lib.maintainers; [ vbgl ]; diff --git a/pkgs/development/ocaml-modules/ipaddr/default.nix b/pkgs/development/ocaml-modules/ipaddr/default.nix index 9a12fb44fffb16aabe63473a3a53ddd4e5e3d187..3d5959fe64e24b2a751f7cded05d431731d1ad01 100644 --- a/pkgs/development/ocaml-modules/ipaddr/default.nix +++ b/pkgs/development/ocaml-modules/ipaddr/default.nix @@ -1,21 +1,16 @@ -{ stdenv, fetchurl, ocaml, ocamlbuild, findlib -, dune, sexplib, ppx_sexp_conv -}: +{ stdenv, fetchurl, buildDunePackage, sexplib, ppx_sexp_conv }: -stdenv.mkDerivation rec { - name = "ocaml${ocaml.version}-ipaddr-${version}"; +buildDunePackage rec { + pname = "ipaddr"; version = "2.8.0"; src = fetchurl { - url = "https://github.com/mirage/ocaml-ipaddr/archive/${version}.tar.gz"; + url = "https://github.com/mirage/ocaml-${pname}/archive/${version}.tar.gz"; sha256 = "1amb1pbm9ybpxy6190qygpj6nmbzzs2r6vx4xh5r6v89szx9rfxw"; }; - buildInputs = [ ocaml findlib ocamlbuild dune ]; propagatedBuildInputs = [ ppx_sexp_conv sexplib ]; - inherit (dune) installPhase; - meta = with stdenv.lib; { homepage = https://github.com/mirage/ocaml-ipaddr; description = "A library for manipulation of IP (and MAC) address representations "; diff --git a/pkgs/development/ocaml-modules/janestreet/default.nix b/pkgs/development/ocaml-modules/janestreet/default.nix index 040a4ca618b0214315e6dd4a77e2c8663154b362..504e83734d8880571dfdac720a07c53b10c0ba90 100644 --- a/pkgs/development/ocaml-modules/janestreet/default.nix +++ b/pkgs/development/ocaml-modules/janestreet/default.nix @@ -7,26 +7,26 @@ rec { ocaml-compiler-libs = janePackage { - name = "ocaml-compiler-libs"; + pname = "ocaml-compiler-libs"; hash = "03jds7bszh8wwpfwxb3dg0gyr1j1872wxwx1xqhry5ir0i84bg0s"; meta.description = "OCaml compiler libraries repackaged"; }; sexplib0 = janePackage { - name = "sexplib0"; + pname = "sexplib0"; meta.description = "Library containing the definition of S-expressions and some base converters"; hash = "07v3ggyss7xhfv14bjk1n87sr42iqwj4cgjiv2lcdfkqk49i2bmi"; }; parsexp = janePackage { - name = "parsexp"; + pname = "parsexp"; hash = "1nyq23s5igd8cf3n4qxprjvhbmb6ighb3fy5mw7hxl0mdgsw5fvz"; propagatedBuildInputs = [ sexplib0 ]; meta.description = "S-expression parsing library"; }; sexplib = janePackage { - name = "sexplib"; + pname = "sexplib"; meta.description = "Library for serializing OCaml values to and from S-expressions"; hash = "1qfl0m04rpcjvc4yw1hzh6r16jpwmap0sa9ax6zjji67dz4szpyb"; propagatedBuildInputs = [ num parsexp ]; @@ -34,28 +34,28 @@ rec { base = janePackage { version = "0.11.1"; - name = "base"; + pname = "base"; hash = "0j6xb4265jr41vw4fjzak6yr8s30qrnzapnc6rl1dxy8bjai0nir"; propagatedBuildInputs = [ sexplib0 ]; meta.description = "Full standard library replacement for OCaml"; }; stdio = janePackage { - name = "stdio"; + pname = "stdio"; hash = "1facajqhvq34g2wrg368y0ajxd6lrj5b3lyzyj0jhdmraxajjcwn"; propagatedBuildInputs = [ base ]; meta.description = "Standard IO library for OCaml"; }; configurator = janePackage { - name = "configurator"; + pname = "configurator"; hash = "0h686630cscav7pil8c3w0gbh6rj4b41dvbnwmicmlkc746q5bfk"; propagatedBuildInputs = [ stdio ]; meta.description = "Helper library for gathering system configuration"; }; ppx_compare = janePackage { - name = "ppx_compare"; + pname = "ppx_compare"; version = "0.11.1"; hash = "06bq4m1bsm4jlx4g7wh5m99qky7xm4c2g52kaz6pv25hdn5agi2m"; buildInputs = [ ppxlib ]; @@ -64,7 +64,7 @@ rec { }; ppx_sexp_conv = janePackage { - name = "ppx_sexp_conv"; + pname = "ppx_sexp_conv"; version = "0.11.2"; hash = "0pqwnqy1xp309wvdcaax4lg02yk64lq2w03mbgfvf6ps5ry4gis9"; propagatedBuildInputs = [ sexplib0 ppxlib ppx_deriving ]; @@ -72,7 +72,7 @@ rec { }; variantslib = janePackage { - name = "variantslib"; + pname = "variantslib"; hash = "0hbsk34ghc28h8pzbma923ma2bgnz8lzrgcqqx9bzg161jl4s4r3"; buildInputs = [ ppxlib ]; propagatedBuildInputs = [ base ]; @@ -80,7 +80,7 @@ rec { }; ppx_variants_conv = janePackage { - name = "ppx_variants_conv"; + pname = "ppx_variants_conv"; version = "0.11.1"; hash = "1yc0gsds5m2nv39zga8nnrca2n75rkqy5dz4xj1635ybz20hhbjd"; buildInputs = [ ppxlib ]; @@ -89,48 +89,48 @@ rec { }; fieldslib = janePackage { - name = "fieldslib"; + pname = "fieldslib"; hash = "1yvjvfax56lmn2lxbykcmhgmxypws1vp9lhnyb8bhbavsv8yc6da"; propagatedBuildInputs = [ ppxlib ]; meta.description = "OCaml record fields as first class values"; }; ppx_fields_conv = janePackage { - name = "ppx_fields_conv"; + pname = "ppx_fields_conv"; hash = "1bb9cmn4js7p3qh8skzyik1pcz6sj1k4xkhf12fg1bjmb5fd0jx1"; propagatedBuildInputs = [ fieldslib ]; meta.description = "Generation of accessor and iteration functions for OCaml records"; }; ppx_custom_printf = janePackage { - name = "ppx_custom_printf"; + pname = "ppx_custom_printf"; hash = "1dvjzvaxhx53jqwrrlxdckwl1azrhs9kvwb48mhgd0jnz65ny726"; propagatedBuildInputs = [ ppx_sexp_conv ]; meta.description = "Printf-style format-strings for user-defined string conversion"; }; bin_prot = janePackage { - name = "bin_prot"; + pname = "bin_prot"; hash = "1mgbyzsr8h0y4s4j9dv7hsdrxyzhhjww5khwg2spi2my7ia95m0l"; propagatedBuildInputs = [ ppx_compare ppx_custom_printf ppx_fields_conv ppx_variants_conv ]; meta.description = "Binary protocol generator"; }; jane-street-headers = janePackage { - name = "jane-street-headers"; + pname = "jane-street-headers"; hash = "0kij4c7qxrja787f3sm3z6mzr322486h2djrlyhnl66vp8hrv8si"; meta.description = "Jane Street header files"; }; ppx_here = janePackage { - name = "ppx_here"; + pname = "ppx_here"; hash = "04njv8s4n54x9rg0012ymd6y6lrnqprnh0f0f6s0jcp79q7mv43i"; buildInputs = [ ppxlib ]; meta.description = "Expands [%here] into its location"; }; ppx_assert = janePackage { - name = "ppx_assert"; + pname = "ppx_assert"; hash = "0qbdrl0rj0midnb6sdyaz00s0d4nb8zrrdf565lcdsi1rbnyrzan"; buildInputs = [ ppx_here ]; propagatedBuildInputs = [ ppx_compare ppx_sexp_conv ]; @@ -139,14 +139,14 @@ rec { ppx_hash = janePackage { version = "0.11.1"; - name = "ppx_hash"; + pname = "ppx_hash"; hash = "1p0ic6aijxlrdggpmycj12q3cy9xksbq2vq727215maz4snvlf5p"; propagatedBuildInputs = [ ppx_compare ppx_sexp_conv ]; meta.description = "A ppx rewriter that generates hash functions from type expressions and definitions"; }; ppx_inline_test = janePackage { - name = "ppx_inline_test"; + pname = "ppx_inline_test"; hash = "11n94fz1asjf5vqdgriv0pvsa5lbfpqcyk525c7816w23vskcvq6"; buildInputs = [ ppxlib ]; propagatedBuildInputs = [ base ]; @@ -154,7 +154,7 @@ rec { }; ppx_sexp_message = janePackage { - name = "ppx_sexp_message"; + pname = "ppx_sexp_message"; hash = "0d94pf0mrmyp905ncgj4w6cc6zpm4nlib6nclslhgs89pxpzg6a0"; buildInputs = [ ppx_here ]; propagatedBuildInputs = [ ppx_sexp_conv ]; @@ -162,7 +162,7 @@ rec { }; typerep = janePackage { - name = "typerep"; + pname = "typerep"; hash = "00j4by75fl9niqvlpiyw6ymlmlmgfzysm8w25cj5wsfsh4yrgr74"; propagatedBuildInputs = [ base ]; meta.description = "Runtime types for OCaml"; @@ -170,7 +170,7 @@ rec { ppx_typerep_conv = janePackage { version = "0.11.1"; - name = "ppx_typerep_conv"; + pname = "ppx_typerep_conv"; hash = "0a13dpfrrg0rsm8qni1bh7pqcda30l70z8r6yzi5a64bmwk7g5ah"; buildInputs = [ ppxlib ]; propagatedBuildInputs = [ ppx_deriving typerep ]; @@ -178,7 +178,7 @@ rec { }; ppx_js_style = janePackage { - name = "ppx_js_style"; + pname = "ppx_js_style"; hash = "1cwqyrkykc8wi60grbid1w072fcvf7k0hd387jz7mxfw44qyb85g"; propagatedBuildInputs = [ ppxlib octavius ]; meta.description = "Code style checker for Jane Street Packages"; @@ -186,7 +186,7 @@ rec { ppx_enumerate = janePackage { version = "0.11.1"; - name = "ppx_enumerate"; + pname = "ppx_enumerate"; hash = "0spx9k1v7vjjb6sigbfs69yndgq76v114jhxvzjmffw7q989cyhr"; buildInputs = [ ppxlib ]; propagatedBuildInputs = [ ppx_deriving ]; @@ -194,14 +194,14 @@ rec { }; ppx_base = janePackage { - name = "ppx_base"; + pname = "ppx_base"; hash = "079caqjbxk1d33hy69017n3dwslqy52alvzjddwpdjb04vjadlk6"; propagatedBuildInputs = [ ppx_compare ppx_enumerate ppx_hash ppx_js_style ]; meta.description = "Base set of ppx rewriters"; }; ppx_bench = janePackage { - name = "ppx_bench"; + pname = "ppx_bench"; hash = "0z98r6y4lpj6dy265m771ylx126hq3v1zjsk74yqvpwwd63gx3jz"; buildInputs = [ ppxlib ppx_inline_test ]; meta.description = "Syntax extension for writing in-line benchmarks in OCaml code"; @@ -209,7 +209,7 @@ rec { ppx_bin_prot = janePackage { version = "0.11.1"; - name = "ppx_bin_prot"; + pname = "ppx_bin_prot"; hash = "1h60i75bzvhna1axyn662gyrzhh441l79vl142d235i5x31dmnkz"; buildInputs = [ ppxlib ppx_here ]; propagatedBuildInputs = [ bin_prot ]; @@ -217,7 +217,7 @@ rec { }; ppx_expect = janePackage { - name = "ppx_expect"; + pname = "ppx_expect"; hash = "1g0r67vfw9jr75pybiw4ysfiswlzyfpbj0gl91rx62gqdhjh1pga"; buildInputs = [ ppx_assert ppx_custom_printf ppx_fields_conv ppx_here ppx_variants_conv re ]; propagatedBuildInputs = [ fieldslib ppx_compare ppx_inline_test ppx_sexp_conv ]; @@ -225,21 +225,21 @@ rec { }; ppx_fail = janePackage { - name = "ppx_fail"; + pname = "ppx_fail"; hash = "0d0xadcl7mhp81kspcd2b0nh75h34w5a6s6j9qskjjbjif87wiix"; buildInputs = [ ppxlib ppx_here ]; meta.description = "Add location to calls to failwiths"; }; ppx_let = janePackage { - name = "ppx_let"; + pname = "ppx_let"; hash = "1ckzwljlb78cdf6xxd24nddnmsihvjrnq75r1b255aj3xgkzsygx"; buildInputs = [ ppxlib ]; meta.description = "Monadic let-bindings"; }; ppx_optcomp = janePackage { - name = "ppx_optcomp"; + pname = "ppx_optcomp"; hash = "1rahkjq6vpffs7wdz1crgbxkdnlfkj1i3j12c2andy4fhj49glcm"; buildInputs = [ ppxlib ]; propagatedBuildInputs = [ ppx_deriving ]; @@ -247,21 +247,21 @@ rec { }; ppx_optional = janePackage { - name = "ppx_optional"; + pname = "ppx_optional"; hash = "0aw3hvrsdjpw4ik7rf15ghak31vhdr1lgpphr18mj76rnlrhirmx"; propagatedBuildInputs = [ ppxlib ]; meta.description = "Pattern matching on flat options"; }; ppx_pipebang = janePackage { - name = "ppx_pipebang"; + pname = "ppx_pipebang"; hash = "0smgq587amlr3hivbbg153p83dj37w30cssp9cffc0v8kg84lfhr"; buildInputs = [ ppxlib ]; meta.description = "A ppx rewriter that inlines reverse application operators |> and |!"; }; ppx_sexp_value = janePackage { - name = "ppx_sexp_value"; + pname = "ppx_sexp_value"; hash = "107zwb580nrmc0l03dl3y3hf12s3c1vv8b8mz6sa4k5afp3s9nkl"; buildInputs = [ ppx_here ]; propagatedBuildInputs = [ ppx_sexp_conv ]; @@ -269,7 +269,7 @@ rec { }; ppx_jane = janePackage { - name = "ppx_jane"; + pname = "ppx_jane"; hash = "0l1p6llaa60mrc5p9400cqv9yy6h76x5wfq3z1cx5xawy0yz4vlb"; buildInputs = [ ppxlib ]; propagatedBuildInputs = [ ppx_assert ppx_base ppx_bench ppx_bin_prot ppx_expect ppx_fail ppx_here ppx_let ppx_optcomp ppx_optional ppx_pipebang ppx_sexp_message ppx_sexp_value ppx_typerep_conv ]; @@ -277,7 +277,7 @@ rec { }; splittable_random = janePackage { - name = "splittable_random"; + pname = "splittable_random"; hash = "1yrvpm6g62f8k6ihccxhfxpvmxbqxhi7p790a8jkdmyfdd1l6z73"; propagatedBuildInputs = [ ppx_jane ]; meta.description = "PRNG that can be split into independent streams"; @@ -285,7 +285,7 @@ rec { core_kernel = janePackage { version = "0.11.1"; - name = "core_kernel"; + pname = "core_kernel"; hash = "1dg7ygy7i64c5gaakb1cp1b26p9ks81vbxmb8fd7jff2q60j2z2g"; propagatedBuildInputs = [ configurator jane-street-headers sexplib splittable_random ]; meta.description = "Jane Street's standard library overlay (kernel)"; @@ -293,35 +293,35 @@ rec { spawn = janePackage { version = "0.12.0"; - name = "spawn"; + pname = "spawn"; hash = "0amgj7g9sjlbjivn1mg7yjdmxd21hgp4a0ak2zrm95dmm4gi846i"; meta.description = "Spawning sub-processes"; }; core = janePackage { version = "0.11.2"; - name = "core"; + pname = "core"; hash = "0vpsvd75lxb09il2rnzyib9mlr51v1hzqdc9fdxgx353pb5agh8a"; propagatedBuildInputs = [ core_kernel spawn ]; meta.description = "Jane Street's standard library overlay"; }; textutils_kernel = janePackage { - name = "textutils_kernel"; + pname = "textutils_kernel"; hash = "0s1ps7h54vgl76pll3y5qa1bw8f4h8wxc8mg8jq6bz8vxvl0dfv4"; propagatedBuildInputs = [ core_kernel ]; meta.description = "The subset of textutils using only core_kernel and working in javascript"; }; textutils = janePackage { - name = "textutils"; + pname = "textutils"; hash = "1jmhpaihnndf4pr8xsk7ws70n4mvv34ry0ggqqpfs3wb2vkcdg6j"; propagatedBuildInputs = [ core textutils_kernel ]; meta.description = "Text output utilities"; }; re2 = janePackage { - name = "re2"; + pname = "re2"; hash = "0bl65d0nmvr7k1mkkcc4aai86l5qzgn1xxwmszshpwhaz87cqghd"; propagatedBuildInputs = [ core_kernel ]; meta = { @@ -331,7 +331,7 @@ rec { }; core_extended = janePackage { - name = "core_extended"; + pname = "core_extended"; hash = "1fvnr6zkpbl48dl7nn3j1dpsrr6bi00iqh282wg5lgdhcsjbc0dy"; propagatedBuildInputs = [ core re re2 textutils ]; postPatch = '' @@ -342,28 +342,28 @@ rec { async_kernel = janePackage { version = "0.11.1"; - name = "async_kernel"; + pname = "async_kernel"; hash = "1ssv0gqbdns6by1wdjrrs35cj1c1n1qcfkxs8hj04b7x89wzvf1q"; propagatedBuildInputs = [ core_kernel ]; meta.description = "Jane Street Capital's asynchronous execution library (core)"; }; protocol_version_header = janePackage { - name = "protocol_version_header"; + pname = "protocol_version_header"; hash = "159qmkb0dsfmr1lv2ly50aqszpm24bvrm3sw07n2zhkxgy6q613z"; propagatedBuildInputs = [ core_kernel ocaml-migrate-parsetree ]; meta.description = "Protocol aware version negotiation"; }; async_rpc_kernel = janePackage { - name = "async_rpc_kernel"; + pname = "async_rpc_kernel"; hash = "0wl7kp30qxkalk91q5pja9agsvvmdjvb2q7s3m79dlvwwi11l33y"; propagatedBuildInputs = [ core_kernel async_kernel protocol_version_header ]; meta.description = "Platform-independent core of Async RPC library"; }; async_unix = janePackage { - name = "async_unix"; + pname = "async_unix"; hash = "1y5za5fdh0x82zdjigxci9zm9jnpfd2lfgpjcq4rih3s28f16sf7"; propagatedBuildInputs = [ core async_kernel ]; meta.description = "Jane Street Capital's asynchronous execution library (unix)"; @@ -371,91 +371,91 @@ rec { async_extra = janePackage { version = "0.11.1"; - name = "async_extra"; + pname = "async_extra"; hash = "0dmplvqf41820rm5i0l9bx1xmmdlq8zsszi36y2rkjna8991f7s2"; propagatedBuildInputs = [ async_rpc_kernel async_unix ]; meta.description = "Jane Street's asynchronous execution library (extra)"; }; async = janePackage { - name = "async"; + pname = "async"; hash = "1i05hzk4mhzj1mw98b2bdbxhnq03jvhkkkw4d948i6265jzrrbv5"; propagatedBuildInputs = [ async_extra ]; meta.description = "Jane Street Capital's asynchronous execution library"; }; async_find = janePackage { - name = "async_find"; + pname = "async_find"; hash = "0s0qafx74ri1vr2vv3iy1j7s3p6gp7vyg0mw5g17iafk0w6lv2iq"; propagatedBuildInputs = [ async ]; meta.description = "Directory traversal with Async"; }; async_interactive = janePackage { - name = "async_interactive"; + pname = "async_interactive"; hash = "01rlfcylpiak6a2n6q3chp73cvkhvb65n906dj0flmxmagn7dxd1"; propagatedBuildInputs = [ async ]; meta.description = "Utilities for building simple command-line based user interfaces"; }; async_parallel = janePackage { - name = "async_parallel"; + pname = "async_parallel"; hash = "0hak8ba3rfzqhz5hz2annqmsv5bkqzdihhafp0f58ryrlskafwag"; propagatedBuildInputs = [ async ]; meta.description = "Distributed computing library"; }; async_shell = janePackage { - name = "async_shell"; + pname = "async_shell"; hash = "1jb01ygfnhabsy72xlcg11vp7rr37sg555sm0k3yxl4r5az3y2ay"; propagatedBuildInputs = [ core_extended async ]; meta.description = "Shell helpers for Async"; }; async_ssl = janePackage { - name = "async_ssl"; + pname = "async_ssl"; hash = "1p83fzfla4rb820irdrz3f2hp8kq5zrhw47rqmfv6qydlca1bq64"; propagatedBuildInputs = [ async ctypes openssl ]; meta.description = "Async wrappers for SSL"; }; sexp_pretty = janePackage { - name = "sexp_pretty"; + pname = "sexp_pretty"; hash = "0xskahjggbwvvb82fn0jp1didxbgpmgks76xhwp9s3vqkhgz6918"; propagatedBuildInputs = [ ppx_base re sexplib ]; meta.description = "S-expression pretty-printer"; }; expect_test_helpers_kernel = janePackage { - name = "expect_test_helpers_kernel"; + pname = "expect_test_helpers_kernel"; hash = "0m113vq4m1xm3wmwa08r6qjc7p5f0y3ss8s4i2z591ycgs2fxzlj"; propagatedBuildInputs = [ core_kernel sexp_pretty ]; meta.description = "Helpers for writing expectation tests"; }; expect_test_helpers = janePackage { - name = "expect_test_helpers"; + pname = "expect_test_helpers"; hash = "13n6h7mimwkbsjdix96ghfrmxjd036m4h4zgl8qag00aacqclvpi"; propagatedBuildInputs = [ async expect_test_helpers_kernel ]; meta.description = "Async helpers for writing expectation tests"; }; bignum = janePackage { - name = "bignum"; + pname = "bignum"; hash = "0hqd88fb90rsj1wjj4k79gigcf31c6a45msasw99zzifzppr3w3f"; propagatedBuildInputs = [ core_kernel zarith num ]; meta.description = "Core-flavoured wrapper around zarith's arbitrary-precision rationals"; }; cinaps = janePackage { - name = "cinaps"; + pname = "cinaps"; hash = "0f8cx4xkkk4wqpcbvva8kxdndbgawljp17dwppc6zpjpkjl8s84j"; propagatedBuildInputs = [ re ]; meta.description = "Trivial Metaprogramming tool using the OCaml toplevel"; }; command_rpc = janePackage { - name = "command_rpc"; + pname = "command_rpc"; hash = "111v4km0ds8ixmpmwg9ck36ap97400mqzhijf57kj6wfwgzcmr2g"; propagatedBuildInputs = [ async ]; meta.description = "Utilities for Versioned RPC communication with a child process over stdin and stdout"; @@ -464,49 +464,49 @@ rec { # Deprecated libraries ppx_ast = janePackage { - name = "ppx_ast"; + pname = "ppx_ast"; hash = "125bzswcwr3nb26ss8ydh8z4218c8fi3s2kvgqp1j1fhc5wwzqgj"; propagatedBuildInputs = [ ppxlib ]; meta.description = "Deprecated (see ppxlib)"; }; ppx_core = janePackage { - name = "ppx_core"; + pname = "ppx_core"; hash = "11hgm9mxig4cm3c827f6dns9mjv3pf8g6skf10x0gw9xnp1dmzmx"; propagatedBuildInputs = [ ppxlib ]; meta.description = "Deprecated (see ppxlib)"; }; ppx_driver = janePackage { - name = "ppx_driver"; + pname = "ppx_driver"; hash = "00kfx6js2kxk57k4v7hiqvwk7h35whgjihnxf75m82rnaf4yzvfi"; propagatedBuildInputs = [ ppxlib ]; meta.description = "Deprecated (see ppxlib)"; }; ppx_metaquot = janePackage { - name = "ppx_metaquot"; + pname = "ppx_metaquot"; hash = "1vz8bi56jsz8w0894vgbfsfvmdyh5k1dgv45l8vhkks0s7d3ldji"; propagatedBuildInputs = [ ppxlib ]; meta.description = "Deprecated (see ppxlib)"; }; ppx_traverse = janePackage { - name = "ppx_traverse"; + pname = "ppx_traverse"; hash = "1p2n5da4mxh9fk4gvxlibc706bs5xwkbppxd1x0ip1vln5pabbq5"; propagatedBuildInputs = [ ppxlib ]; meta.description = "Deprecated (see ppxlib)"; }; ppx_traverse_builtins = janePackage { - name = "ppx_traverse_builtins"; + pname = "ppx_traverse_builtins"; hash = "0qlf7i8h8k3a9h8nhb0ki3y1knr6wgbm24f1qaqni53fpvzv0pfb"; propagatedBuildInputs = [ ppxlib ]; meta.description = "Deprecated (see ppxlib)"; }; ppx_type_conv = janePackage { - name = "ppx_type_conv"; + pname = "ppx_type_conv"; hash = "04dbrglqqhkas25cpjz8xhjcbpk141c35qggzw66bn69izczfmaf"; propagatedBuildInputs = [ ppxlib ]; meta.description = "Deprecated (see ppxlib)"; @@ -515,35 +515,35 @@ rec { # Miscellaneous Jane Street packages core_bench = janePackage { - name = "core_bench"; + pname = "core_bench"; hash = "10i28ssfdqxxhq0rvnlp581lr1cq2apkhmm8j83fksjkmbxcrasc"; propagatedBuildInputs = [ core_extended ]; meta.description = "Micro-benchmarking library for OCaml"; }; core_profiler = janePackage { - name = "core_profiler"; + pname = "core_profiler"; hash = "1kaaw3jp3qarbd9rgpjfb9md0dqblf2bxiqb245sqmx4c1346v1c"; propagatedBuildInputs = [ core_extended ]; meta.description = "Profiling library"; }; csvfields = janePackage { - name = "csvfields"; + pname = "csvfields"; hash = "10zw4fjlniivfdzzz79lnbvcjnhk5y16m1p8mn4xbs23n6mbix0f"; propagatedBuildInputs = [ core expect_test_helpers ]; meta.description = "Runtime support for ppx_xml_conv and ppx_csv_conv"; }; ecaml = janePackage { - name = "ecaml"; + pname = "ecaml"; hash = "1is5156q59s427x3q5nh9wsi8h1x77670bmyilqxasy39yway7g8"; propagatedBuildInputs = [ async expect_test_helpers_kernel ]; meta.description = "Writing Emacs plugin in OCaml"; }; email_message = janePackage { - name = "email_message"; + pname = "email_message"; hash = "131jd72k4s8cdbgg6gyg7w5v8mphdlvdx4fgvh8d9a1m7kkvbxfg"; propagatedBuildInputs = [ async angstrom core_extended cryptokit magic-mime ounit ]; meta.description = "E-mail message parser"; @@ -551,28 +551,28 @@ rec { incremental_kernel = janePackage { version = "0.11.1"; - name = "incremental_kernel"; + pname = "incremental_kernel"; hash = "1qp9dqncx2h0np0rndqaic4dna8f1dlkqnbjfcdhcim5dp2vg4x6"; propagatedBuildInputs = [ core_kernel ]; meta.description = "Library for incremental computations depending only on core_kernel"; }; incremental = janePackage { - name = "incremental"; + pname = "incremental"; hash = "1xchd3v4kj56wixjrsnj7m7l0374cgkzybihs2b62mn65xf6n7ki"; propagatedBuildInputs = [ core incremental_kernel ]; meta.description = "Library for incremental computations"; }; incr_map = janePackage { - name = "incr_map"; + pname = "incr_map"; hash = "01vx9aldxpigz5ah9h337xcw73a7r8449v8l2xbralljhs0zglx9"; propagatedBuildInputs = [ incremental_kernel ]; meta.description = "Helpers for incremental operations on map like data structures"; }; ocaml_plugin = janePackage { - name = "ocaml_plugin"; + pname = "ocaml_plugin"; hash = "0fal5j59qkbksg6ak1ngn92pcgg3f9gwfaglpxb7l6bck20kaigp"; buildInputs = [ ocamlbuild ]; propagatedBuildInputs = [ async ]; @@ -580,28 +580,28 @@ rec { }; parsexp_io = janePackage { - name = "parsexp_io"; + pname = "parsexp_io"; hash = "0rhdl40jiirvv6fhgjk50n8wzs3jly5d8dyyyfgpjgl39mwkjjnb"; propagatedBuildInputs = [ parsexp ppx_js_style ]; meta.description = "S-expression parsing library (IO functions)"; }; patience_diff = janePackage { - name = "patience_diff"; + pname = "patience_diff"; hash = "0q7a64fgg97qcd6d8c45gyz63x5vq004axxqvvfg92b8f3x2plx4"; propagatedBuildInputs = [ core_kernel ]; meta.description = "Tool and library implementing patience diff"; }; posixat = janePackage { - name = "posixat"; + pname = "posixat"; hash = "04rs4sl0r4rg9m6l9kkqkmc4n87sv4a4w9ibq4zsjk9j4n6r2df8"; propagatedBuildInputs = [ ppx_optcomp ppx_sexp_conv sexplib ]; meta.description = "Binding to the posix *at functions"; }; rpc_parallel = janePackage { - name = "rpc_parallel"; + pname = "rpc_parallel"; hash = "13dx59x73i8mkwv2qkh8gx6kk8arlvghj57k1jdscdmzmyqc9gvn"; propagatedBuildInputs = [ async ]; meta.description = "Type-safe library for building parallel applications"; @@ -609,14 +609,14 @@ rec { shexp = janePackage { version = "0.11.1"; - name = "shexp"; + pname = "shexp"; hash = "06yssp7bsmabaxvw9bqxyrsji1gkvl7if5adba3v6h4kilqy7rqg"; propagatedBuildInputs = [ posixat spawn ]; meta.description = "Process library and s-expression based shell"; }; topological_sort = janePackage { - name = "topological_sort"; + pname = "topological_sort"; hash = "1qnz5b1rs45lsl1ycxd1lglpmh8444gy5khhdp5fvxy987zkzklz"; propagatedBuildInputs = [ core_kernel ]; meta.description = "Topological sort algorithm"; diff --git a/pkgs/development/ocaml-modules/janestreet/janePackage.nix b/pkgs/development/ocaml-modules/janestreet/janePackage.nix index 439c6f500bc95df7496cf8e905008b75b39f779c..b3ffecb38ce9f4fe431ffb998e75f1e82342f191 100644 --- a/pkgs/development/ocaml-modules/janestreet/janePackage.nix +++ b/pkgs/development/ocaml-modules/janestreet/janePackage.nix @@ -1,28 +1,19 @@ -{ stdenv, fetchFromGitHub, ocaml, dune, findlib, defaultVersion ? "0.11.0" }: +{ stdenv, fetchFromGitHub, buildDunePackage, defaultVersion ? "0.11.0" }: -{ name, version ? defaultVersion, buildInputs ? [], hash, meta, ...}@args: +{ pname, version ? defaultVersion, hash, ...}@args: -if !stdenv.lib.versionAtLeast ocaml.version "4.04" -then throw "${name}-${version} is not available for OCaml ${ocaml.version}" else - -stdenv.mkDerivation (args // { - name = "ocaml${ocaml.version}-${name}-${version}"; +buildDunePackage (args // { inherit version; + minimumOCamlVersion = "4.04"; + src = fetchFromGitHub { owner = "janestreet"; - repo = name; + repo = pname; rev = "v${version}"; sha256 = hash; }; - buildInputs = [ ocaml dune findlib ] ++ buildInputs; - - inherit (dune) installPhase; - - meta = { - license = stdenv.lib.licenses.asl20; - inherit (ocaml.meta) platforms; - homepage = "https://github.com/janestreet/${name}"; - } // meta; + meta.license = stdenv.lib.licenses.asl20; + meta.homepage = "https://github.com/janestreet/${pname}"; }) diff --git a/pkgs/development/ocaml-modules/janestreet/old.nix b/pkgs/development/ocaml-modules/janestreet/old.nix index 27a65c502753a2e4c37cb0ad11fc02e589132858..447a9cdf71f50fa813e74236fa1e6d16275852a8 100644 --- a/pkgs/development/ocaml-modules/janestreet/old.nix +++ b/pkgs/development/ocaml-modules/janestreet/old.nix @@ -7,7 +7,7 @@ rec { # Jane Street packages, up to ppx_core sexplib = janePackage { - name = "sexplib"; + pname = "sexplib"; meta.description = "Automated S-expression conversion"; version = "0.10.0"; hash = "1agw649n0rnf6h4y2dr1zs1970nncxgjmf90848vbxv8y9im4yy2"; @@ -15,7 +15,7 @@ rec { }; base = janePackage { - name = "base"; + pname = "base"; version = "0.9.4"; hash = "0x85xi66b4zwlbdwmyc99zcmawgpp75gxqbl55rr67awavw162rw"; propagatedBuildInputs = [ sexplib ]; @@ -23,13 +23,13 @@ rec { }; ocaml-compiler-libs = janePackage { - name = "ocaml-compiler-libs"; + pname = "ocaml-compiler-libs"; hash = "1jz3nfrb6295sj4xj1j0zld8mhfj0xy2k4vlp9yf9sh3748n090l"; meta.description = "OCaml compiler libraries repackaged"; }; ppx_ast = janePackage ({ - name = "ppx_ast"; + pname = "ppx_ast"; propagatedBuildInputs = [ ocaml-compiler-libs ocaml-migrate-parsetree ]; meta.description = "OCaml AST used by Jane Street ppx rewriters"; } // (if lib.versionAtLeast ocaml.version "4.06" @@ -43,13 +43,13 @@ rec { )); ppx_traverse_builtins = janePackage { - name = "ppx_traverse_builtins"; + pname = "ppx_traverse_builtins"; hash = "10ajvz02ka6qimlfrq7py4ljhk8awqkga6240kn8j046b4xfyxzi"; meta.description = "Builtins for Ppx_traverse"; }; stdio = janePackage { - name = "stdio"; + pname = "stdio"; version = "0.9.1"; hash = "13rj3ii0rvmklfim9ild0ib44ssdadig7a9ccjbz22m0pw84a1sx"; propagatedBuildInputs = [ base ]; @@ -57,7 +57,7 @@ rec { }; ppx_core = janePackage { - name = "ppx_core"; + pname = "ppx_core"; hash = "15400zxxkqdimmjpdjcs36gcbxbrhylmaczlzwd6x65v1h9aydz3"; propagatedBuildInputs = [ ppx_ast ppx_traverse_builtins stdio ]; meta.description = "Jane Street's standard library for ppx rewriters"; @@ -66,14 +66,14 @@ rec { # Jane Street packages, up to ppx_base ppx_optcomp = janePackage { - name = "ppx_optcomp"; + pname = "ppx_optcomp"; hash = "1wfj6fnh92s81yncq7yyhmax7j6zpjj1sg1f3qa1f9c5kf4kkzrd"; propagatedBuildInputs = [ ppx_core ]; meta.description = "Optional compilation for OCaml"; }; ppx_driver = janePackage { - name = "ppx_driver"; + pname = "ppx_driver"; version = "0.9.1"; hash = "1amz49x6v4sh1v2my6618cah0zv5i7jmsapbk9ydps6419g5asay"; buildInputs = [ ocamlbuild ]; @@ -82,56 +82,56 @@ rec { }; ppx_metaquot = janePackage { - name = "ppx_metaquot"; + pname = "ppx_metaquot"; hash = "15qfd3s4x2pz006nx5316laxd3gqqi472x432qg4rfx4yh3vn31k"; propagatedBuildInputs = [ ppx_driver ]; meta.description = "Metaquotations for ppx_ast"; }; ppx_type_conv = janePackage { - name = "ppx_type_conv"; + pname = "ppx_type_conv"; hash = "0a0gxjvjiql9vg37k0akn8xr5724nv3xb7v37xpidv7ld927ks7p"; propagatedBuildInputs = [ ppx_metaquot ppx_deriving ]; meta.description = "Support Library for type-driven code generators"; }; ppx_sexp_conv = janePackage { - name = "ppx_sexp_conv"; + pname = "ppx_sexp_conv"; hash = "03cg2sym0wvpd5l7q4w9bclp589z5byygwsmnnq9h1ih56cmd55l"; propagatedBuildInputs = [ ppx_type_conv sexplib ]; meta.description = "Generation of S-expression conversion functions from type definitions"; }; ppx_compare = janePackage { - name = "ppx_compare"; + pname = "ppx_compare"; hash = "0wrszpvn1nms5sb5rb29p7z1wmqyd15gfzdj4ax8f843p5ywx3w9"; propagatedBuildInputs = [ ppx_type_conv ]; meta.description = "Generation of comparison functions from types"; }; ppx_enumerate = janePackage { - name = "ppx_enumerate"; + pname = "ppx_enumerate"; hash = "1dfy86j2z12p5n9yrwaakx1ngphs5246vxy279kz6i6j34cwxm46"; propagatedBuildInputs = [ ppx_type_conv ]; meta.description = "Generate a list containing all values of a finite type"; }; ppx_hash = janePackage { - name = "ppx_hash"; + pname = "ppx_hash"; hash = "1w1riy2sqd9i611sc5f5z2rqqgjl2gvvkzi5xibpv309nacnl01d"; propagatedBuildInputs = [ ppx_compare ppx_sexp_conv ]; meta.description = "A ppx rewriter that generates hash functions from type expressions and definitions"; }; ppx_js_style = janePackage { - name = "ppx_js_style"; + pname = "ppx_js_style"; hash = "09k02b1l2r7svf9l3ls69h8xydsyiang2ziigxnny2i7gy7b0w59"; propagatedBuildInputs = [ ppx_metaquot octavius ]; meta.description = "Code style checker for Jane Street Packages"; }; ppx_base = janePackage { - name = "ppx_base"; + pname = "ppx_base"; hash = "0qikfzbkd2wyxfrvizz6rgi6vg4ykvxkivacj4gr178dbgfl5if3"; propagatedBuildInputs = [ ppx_enumerate ppx_hash ppx_js_style ]; meta.description = "Base set of ppx rewriters"; @@ -140,49 +140,49 @@ rec { # Jane Street packages, up to ppx_bin_prot fieldslib = janePackage { - name = "fieldslib"; + pname = "fieldslib"; hash = "1wxh59888l1bfz9ipnbcas58gwg744icaixzdbsg4v8f7wymc501"; propagatedBuildInputs = [ ppx_driver ]; meta.description = "OCaml record fields as first class values"; }; variantslib = janePackage { - name = "variantslib"; + pname = "variantslib"; hash = "0kj53n62193j58q9vip8lfhhyf6w9d25wyvxzc163hx5m68yw0fz"; propagatedBuildInputs = [ ppx_driver ]; meta.description = "OCaml variants as first class values"; }; ppx_traverse = janePackage { - name = "ppx_traverse"; + pname = "ppx_traverse"; hash = "1sdqgwyq0w71i03vhc5jq4jk6rsbgwhvain48fnrllpkb5kj2la2"; propagatedBuildInputs = [ ppx_type_conv ]; meta.description = "Automatic generation of open recursion classes"; }; ppx_custom_printf = janePackage { - name = "ppx_custom_printf"; + pname = "ppx_custom_printf"; hash = "0cjy2c2c5g3qxqvwx1yb6p7kbmmpnpb1hll55f7a44x215lg8x19"; propagatedBuildInputs = [ ppx_sexp_conv ppx_traverse ]; meta.description = "Printf-style format-strings for user-defined string conversion"; }; ppx_fields_conv = janePackage { - name = "ppx_fields_conv"; + pname = "ppx_fields_conv"; hash = "0qp8zgmk58iskzrkf4g06i471kg6lrh3wqpy9klrb8pp9mg0xr9z"; propagatedBuildInputs = [ fieldslib ppx_type_conv ]; meta.description = "Generation of accessor and iteration functions for OCaml records"; }; ppx_variants_conv = janePackage { - name = "ppx_variants_conv"; + pname = "ppx_variants_conv"; hash = "1xayhyglgbdjqvb9123kjbwjcv0a3n3302nb0j7g8gmja8w5y834"; propagatedBuildInputs = [ ppx_type_conv variantslib ]; meta.description = "Generation of accessor and iteration functions for OCaml variant types"; }; bin_prot = janePackage { - name = "bin_prot"; + pname = "bin_prot"; version = "0.9.1"; hash = "1bgcmkgz6b5i522996x589zsaiy5b3h37887lwbqvpps8by2ayvk"; propagatedBuildInputs = [ ppx_compare ppx_custom_printf ppx_fields_conv ppx_variants_conv ]; @@ -190,14 +190,14 @@ rec { }; ppx_here = janePackage { - name = "ppx_here"; + pname = "ppx_here"; hash = "0pjscw5ydxgy4fcxakgsazpp09ka057w5n2fp2dpkv2k5gil6rzh"; propagatedBuildInputs = [ ppx_driver ]; meta.description = "Expands [%here] into its location"; }; ppx_bin_prot = janePackage { - name = "ppx_bin_prot"; + pname = "ppx_bin_prot"; hash = "0qw9zqrc5yngzrzpk9awnlnd68xrb7wz5lq807c80ibxk0xvnqn3"; propagatedBuildInputs = [ ppx_here bin_prot ]; meta.description = "Generation of bin_prot readers and writers from types"; @@ -206,14 +206,14 @@ rec { # Jane Street packages, up to ppx_jane ppx_assert = janePackage { - name = "ppx_assert"; + pname = "ppx_assert"; hash = "1s5c75wkc46nlcwmgic5h7f439s26ssrzrcil501c5kpib2hlv6z"; propagatedBuildInputs = [ ppx_sexp_conv ppx_here ppx_compare ]; meta.description = "Assert-like extension nodes that raise useful errors on failure"; }; ppx_inline_test = janePackage { - name = "ppx_inline_test"; + pname = "ppx_inline_test"; version = "0.9.2"; hash = "17j36ihiqprbpa2bk02449k93vaidid2sly5djrk848ccjq8n5aa"; propagatedBuildInputs = [ ppx_metaquot ]; @@ -221,77 +221,77 @@ rec { }; typerep = janePackage { - name = "typerep"; + pname = "typerep"; hash = "0hlc0xiznli1k6azv2mhm1s4xghhxqqd957np7828bfp7r8n2jy3"; propagatedBuildInputs = [ base ]; meta.description = "Runtime types for OCaml"; }; ppx_bench = janePackage { - name = "ppx_bench"; + pname = "ppx_bench"; hash = "1qk4y6c2mpw7bqjppi2nam74vs2sc89wzq162j92wsqxyqsv4p93"; propagatedBuildInputs = [ ppx_inline_test ]; meta.description = "Syntax extension for writing in-line benchmarks in OCaml code"; }; ppx_expect = janePackage { - name = "ppx_expect"; + pname = "ppx_expect"; hash = "1bik53k51wcqv088f0h10n3ms9h51yvg6ha3g1s903i2bxr3xs6b"; propagatedBuildInputs = [ ppx_inline_test ppx_fields_conv ppx_custom_printf ppx_assert ppx_variants_conv re ]; meta.description = "Cram like framework for OCaml"; }; ppx_fail = janePackage { - name = "ppx_fail"; + pname = "ppx_fail"; hash = "0qz0vlazasjyg7cv3iwpzxlvsah3zmn9dzd029xxqr1bji067s32"; propagatedBuildInputs = [ ppx_here ppx_metaquot ]; meta.description = "Add location to calls to failwiths"; }; ppx_let = janePackage { - name = "ppx_let"; + pname = "ppx_let"; hash = "1b914a5nynwxjvfx42v61yigvjhnd548m4yqjfchf38dmqi1f4nr"; propagatedBuildInputs = [ ppx_driver ]; meta.description = "Monadic let-bindings"; }; ppx_optional = janePackage { - name = "ppx_optional"; + pname = "ppx_optional"; hash = "1vknsarxba0zcp5k2jb31wfpvqrv3bpanxbahfl5s2fwspsfdc82"; propagatedBuildInputs = [ ppx_metaquot ]; meta.description = "Pattern matching on flat options"; }; ppx_pipebang = janePackage { - name = "ppx_pipebang"; + pname = "ppx_pipebang"; hash = "1wyfyyjvyi94ds1p90l60wdr85q2v3fq1qdf3gnv9zjfy6sb0g9h"; propagatedBuildInputs = [ ppx_metaquot ]; meta.description = "A ppx rewriter that inlines reverse application operators |> and |!"; }; ppx_sexp_message = janePackage { - name = "ppx_sexp_message"; + pname = "ppx_sexp_message"; hash = "0r0skyr1zf2jh48xrxbs45gzywynhlivkq24xwc0qq435fmc2jqv"; propagatedBuildInputs = [ ppx_sexp_conv ppx_here ]; meta.description = "A ppx rewriter for easy construction of s-expressions"; }; ppx_sexp_value = janePackage { - name = "ppx_sexp_value"; + pname = "ppx_sexp_value"; hash = "0hha5mmx700m8fy9g4znb8278l09chgwlpshny83vsmmzgq2jhah"; propagatedBuildInputs = [ ppx_sexp_conv ppx_here ]; meta.description = "A ppx rewriter that simplifies building s-expressions from OCaml values"; }; ppx_typerep_conv = janePackage { - name = "ppx_typerep_conv"; + pname = "ppx_typerep_conv"; hash = "0bzgfpbqijwxm8x9jq1zb4xi5sbzymk17lw5rylri3hf84p60aq1"; propagatedBuildInputs = [ ppx_type_conv typerep ]; meta.description = "Generation of runtime types from type declarations"; }; ppx_jane = janePackage { - name = "ppx_jane"; + pname = "ppx_jane"; hash = "16m5iw0qyp452nqj83kd0g0x3rw40lrz7392hwpd4di1wi6v2qzc"; propagatedBuildInputs = [ ppx_base ppx_bench ppx_bin_prot ppx_expect ppx_fail ppx_let ppx_optional ppx_pipebang ppx_sexp_message ppx_sexp_value ppx_typerep_conv ]; meta.description = "Standard Jane Street ppx rewriters"; @@ -300,7 +300,7 @@ rec { # Jane Street packages, up to core configurator = janePackage { - name = "configurator"; + pname = "configurator"; version = "0.9.1"; hash = "1q0s0ghcrcrxdj6zr9zr27g7sr4qr9l14kizjphwqwwvgbzawdix"; propagatedBuildInputs = [ ppx_base ]; @@ -308,26 +308,26 @@ rec { }; jane-street-headers = janePackage { - name = "jane-street-headers"; + pname = "jane-street-headers"; hash = "0cdab6sblsidjbwvyvmspykyhqh44rpsjzi2djbfd5m4vh2h14gy"; meta.description = "Jane Street header files"; }; core_kernel = janePackage { - name = "core_kernel"; + pname = "core_kernel"; hash = "05iwvggx9m81x7ijgv9gcv5znf5rmsmb76dg909bm9gkr3hbh7wh"; propagatedBuildInputs = [ configurator jane-street-headers ppx_jane ]; meta.description = "Jane Street's standard library overlay (kernel)"; }; spawn = janePackage { - name = "spawn"; + pname = "spawn"; hash = "1w53b8ni06ajj62yaqjy0pkbm952l0m5fzr088yk15078qaxsnb5"; meta.description = "Spawning sub-processes"; }; core = janePackage { - name = "core"; + pname = "core"; version = "0.9.1"; hash = "1643r0namsgj8xwfr9niimcdwyyq4ddiwd02d73ipb4a8710aqi8"; propagatedBuildInputs = [ core_kernel spawn ]; @@ -337,7 +337,7 @@ rec { # Jane Street packages, up to core_extended re2 = janePackage { - name = "re2"; + pname = "re2"; hash = "1qmhl3yd6y0lq401rz72b1bsbpglb0wighpxn3x8y1ixq415p4xi"; propagatedBuildInputs = [ core_kernel ]; meta = { @@ -347,14 +347,14 @@ rec { }; textutils = janePackage { - name = "textutils"; + pname = "textutils"; hash = "1y6j2qw7rc8d80343lfv1dygnfrhn2qllz57mx28pl5kan743f6d"; propagatedBuildInputs = [ core ]; meta.description = "Text output utilities"; }; core_extended = janePackage { - name = "core_extended"; + pname = "core_extended"; hash = "05cnzzj0kigz9c9gsmd6mfar82wmkbqm9qzrydb80sy2fz5b30rk"; propagatedBuildInputs = [ core re2 textutils ]; postPatch = '' @@ -368,63 +368,63 @@ rec { # Jane Street async packages async_kernel = janePackage { - name = "async_kernel"; + pname = "async_kernel"; hash = "1zwxhzy7f9900rcjls2fql9cpfmwrcah3fazzdz4h2i51f41w62x"; propagatedBuildInputs = [ core_kernel ]; meta.description = "Jane Street Capital's asynchronous execution library (core)"; }; async_rpc_kernel = janePackage { - name = "async_rpc_kernel"; + pname = "async_rpc_kernel"; hash = "1xk3s6s3xkj182p10kig2cqy8md6znif3v661h9cd02n8s57c40b"; propagatedBuildInputs = [ core_kernel async_kernel ]; meta.description = "Platform-independent core of Async RPC library"; }; async_unix = janePackage { - name = "async_unix"; + pname = "async_unix"; hash = "0yd4z28j5vdj2zxqi0fkgh2ic1s9h740is2dk0raga0zr5a1z03d"; propagatedBuildInputs = [ core async_kernel ]; meta.description = "Jane Street Capital's asynchronous execution library (unix)"; }; async_extra = janePackage { - name = "async_extra"; + pname = "async_extra"; hash = "0rpy5lc5dh5mir7flq1jrppd8imby8wyw191yg4nmklg28xp5sx0"; propagatedBuildInputs = [ async_rpc_kernel async_unix ]; meta.description = "Jane Street's asynchronous execution library (extra)"; }; async = janePackage { - name = "async"; + pname = "async"; hash = "10ykzym19srgdiikj0s74dndx5nk15hjq1r2hc61iz48f6caxkb1"; propagatedBuildInputs = [ async_extra ]; meta.description = "Jane Street Capital's asynchronous execution library"; }; async_find = janePackage { - name = "async_find"; + pname = "async_find"; hash = "11dmhdzgf5kn4m0cm6zr28wpwhi2kr4lak9nmgxbrxsq28bcncxq"; propagatedBuildInputs = [ async ]; meta.description = "Directory traversal with Async"; }; async_interactive = janePackage { - name = "async_interactive"; + pname = "async_interactive"; hash = "1mmqqp6bi2wg7bmgf0sw34jn3iyl5kbm200dax8yqq6rfprcs49j"; propagatedBuildInputs = [ async ]; meta.description = "Utilities for building simple command-line based user interfaces"; }; async_parallel = janePackage { - name = "async_parallel"; + pname = "async_parallel"; hash = "0mdprhr1pv4g65g10gr3gaifrzknsdgarwfdbjlvhzfs86075kyn"; propagatedBuildInputs = [ async ]; meta.description = "Distributed computing library"; }; async_shell = janePackage { - name = "async_shell"; + pname = "async_shell"; hash = "02clpz3xv3i5avzifwalylb9gfxzpgnr8bnlfsjixxfk2m7kvsj2"; propagatedBuildInputs = [ core_extended async ]; meta = { @@ -433,7 +433,7 @@ rec { }; async_ssl = janePackage { - name = "async_ssl"; + pname = "async_ssl"; hash = "01w3bg38q61lc3hfh8jsr0sy1ylyv0m6g6h9yvsk8ngj6qk70nss"; propagatedBuildInputs = [ async ctypes openssl ]; meta.description = "Async wrappers for SSL"; @@ -442,21 +442,21 @@ rec { # Jane Street packages, up to expect_test_helpers sexp_pretty = janePackage { - name = "sexp_pretty"; + pname = "sexp_pretty"; hash = "1bx8va468j5b813m0vsh1jzgb6h2qnnjfmjlf2hb82sarv8lllfx"; propagatedBuildInputs = [ ppx_base re ]; meta.description = "S-expression pretty-printer"; }; expect_test_helpers_kernel = janePackage { - name = "expect_test_helpers_kernel"; + pname = "expect_test_helpers_kernel"; hash = "1ycqir8sqgq5nialnrfg29nqn0cqg6jjpgv24drdycdhqf5r2zg6"; propagatedBuildInputs = [ core_kernel sexp_pretty ]; meta.description = "Helpers for writing expectation tests"; }; expect_test_helpers = janePackage { - name = "expect_test_helpers"; + pname = "expect_test_helpers"; hash = "0rsh6rwbqfcrqisk8jp7srlnicsadbzrs02ri6zyx0p3lmznw5r2"; propagatedBuildInputs = [ async expect_test_helpers_kernel ]; meta.description = "Async helpers for writing expectation tests"; @@ -465,28 +465,28 @@ rec { # Miscellaneous Jane Street packages bignum = janePackage { - name = "bignum"; + pname = "bignum"; hash = "0g80mzsi7vc1kq4mzha8y9nl95h6cd041vix3wjrqgkdvb1qd4f3"; propagatedBuildInputs = [ core_kernel zarith ]; meta.description = "Core-flavoured wrapper around zarith's arbitrary-precision rationals"; }; cinaps = janePackage { - name = "cinaps"; + pname = "cinaps"; hash = "02fpjiwrygkpx2q4jfldhbqh0mqxmf955wizr8k4vmsq4wsis0p5"; propagatedBuildInputs = [ re ]; meta.description = "Trivial Metaprogramming tool using the OCaml toplevel"; }; command_rpc = janePackage { - name = "command_rpc"; + pname = "command_rpc"; hash = "0w58z9jkz5qzbvf33wrzhfshzdvnrphj6dq8dmi52ykhfvxm7824"; propagatedBuildInputs = [ async ]; meta.description = "Utilities for Versioned RPC communication with a child process over stdin and stdout"; }; core_bench = janePackage { - name = "core_bench"; + pname = "core_bench"; hash = "1m2q7217nmcsck29i59djkm0h6z3aj0i01niijzr5f6ilbnmyd3h"; propagatedBuildInputs = [ core_extended ]; meta = { @@ -495,7 +495,7 @@ rec { }; core_profiler = janePackage { - name = "core_profiler"; + pname = "core_profiler"; hash = "1ir2v3wdfbf5xzqcma16asc73mkx2q6dzq5y1bx6q1rpa7iznx44"; propagatedBuildInputs = [ core_extended ]; meta = { @@ -504,21 +504,21 @@ rec { }; csvfields = janePackage { - name = "csvfields"; + pname = "csvfields"; hash = "0lbvs1kwl22ryxhw6s089f6683hj2920bn518mvr22rnv7qijy0v"; propagatedBuildInputs = [ core ]; meta.description = "Runtime support for ppx_xml_conv and ppx_csv_conv"; }; ecaml = janePackage { - name = "ecaml"; + pname = "ecaml"; hash = "1a2534bzbwgpm71aj3sm71sm0lkcjdfjj1mk91p1pg9kxn8c5x4i"; propagatedBuildInputs = [ async ]; meta.description = "Writing Emacs plugin in OCaml"; }; email_message = janePackage { - name = "email_message"; + pname = "email_message"; hash = "0cpaf6wn5g883bxdz029bksvrfzih99m7hzbb30fhqglmpmmkniz"; propagatedBuildInputs = [ async core_extended cryptokit magic-mime ounit ]; meta = { @@ -527,28 +527,28 @@ rec { }; incremental_kernel = janePackage { - name = "incremental_kernel"; + pname = "incremental_kernel"; hash = "0zq48wbgqcflh84n10iygi8aa3f0zzmgc7r0jwvsyg7i8zccgvf5"; propagatedBuildInputs = [ core_kernel ]; meta.description = "Library for incremental computations depending only on core_kernel"; }; incremental = janePackage { - name = "incremental"; + pname = "incremental"; hash = "05sx8ia46v4dlvzcn7xgjcwxvbd0wmvv9r2bpvniapjnwr1nvcfh"; propagatedBuildInputs = [ core incremental_kernel ]; meta.description = "Library for incremental computations"; }; incr_map = janePackage { - name = "incr_map"; + pname = "incr_map"; hash = "0358qg9irxbbhn18laqww3mn43mdwvlbr0h2mvg3vdbb2c5jp4fv"; propagatedBuildInputs = [ incremental_kernel ]; meta.description = "Helpers for incremental operations on map like data structures"; }; ocaml_plugin = janePackage { - name = "ocaml_plugin"; + pname = "ocaml_plugin"; hash = "0q33swnlx9p1gcn1aj95501kapb7cnbzbsavid69csczwmzcxr14"; buildInputs = [ ocamlbuild ]; propagatedBuildInputs = [ async ]; @@ -556,28 +556,28 @@ rec { }; parsexp = janePackage { - name = "parsexp"; + pname = "parsexp"; hash = "0brrifvnfqbfk873v6y5b2jixs2d73hpispj9r440kca5cfsv23b"; propagatedBuildInputs = [ ppx_compare ppx_fields_conv ppx_js_style ppx_sexp_value ]; meta.description = "S-expression parsing library"; }; parsexp_io = janePackage { - name = "parsexp_io"; + pname = "parsexp_io"; hash = "0gcmh4dg48xgszladq92yhk1hf492zf0smz462xrwknzlfdkz6a5"; propagatedBuildInputs = [ parsexp ]; meta.description = "S-expression parsing library (IO functions)"; }; patience_diff = janePackage { - name = "patience_diff"; + pname = "patience_diff"; hash = "0vpx9xj1ich5qmj3m26vlmix3nsdj7pd1xzhqwbc7ad2kqwy3grg"; propagatedBuildInputs = [ core_kernel ]; meta.description = "Tool and library implementing patience diff"; }; posixat = janePackage { - name = "posixat"; + pname = "posixat"; hash = "0ak93dyzi6sc6gb0j07fj85b24d8bv6g2hm7jj5xwb39kjwh51jl"; propagatedBuildInputs = [ ppx_sexp_conv ]; meta.description = "Binding to the posix *at functions"; @@ -585,28 +585,28 @@ rec { }; rpc_parallel = janePackage { - name = "rpc_parallel"; + pname = "rpc_parallel"; hash = "0s72msl2p27bz0knjlpgy5qwp0w4z76cq801ps0sab35f8jjfs38"; propagatedBuildInputs = [ async ]; meta.description = "Type-safe library for building parallel applications"; }; shexp = janePackage { - name = "shexp"; + pname = "shexp"; hash = "1fkz4l9z4i0fz2kccd5blm2j9x2x4z6y1cn29wjmc3spqfxbq37y"; propagatedBuildInputs = [ posixat spawn ]; meta.description = "Process library and s-expression based shell"; }; topological_sort = janePackage { - name = "topological_sort"; + pname = "topological_sort"; hash = "1d64fyq0clsgham9p1f5rk01z8pxalglp92xmqw2iznyw0vxhvsy"; propagatedBuildInputs = [ core_kernel ]; meta.description = "Topological sort algorithm"; }; typerep_extended = janePackage { - name = "typerep_extended"; + pname = "typerep_extended"; hash = "15gq8mrvlipd616rffr3f0wqw5d0ijnnizix610g2d5viirh0j9p"; propagatedBuildInputs = [ core_kernel ]; meta.description = "Runtime types for OCaml (Extended)"; diff --git a/pkgs/development/ocaml-modules/jsonm/default.nix b/pkgs/development/ocaml-modules/jsonm/default.nix index 0599a5f19fecbbb3d210280eee89285550a8a03c..ca286ee36f8c1005f1edffa5cd8b3738f76f2490 100644 --- a/pkgs/development/ocaml-modules/jsonm/default.nix +++ b/pkgs/development/ocaml-modules/jsonm/default.nix @@ -13,8 +13,6 @@ stdenv.mkDerivation { buildInputs = [ ocaml findlib ocamlbuild topkg ]; propagatedBuildInputs = [ uutf ]; - unpackCmd = "tar xjf $src"; - inherit (topkg) buildPhase installPhase; meta = { diff --git a/pkgs/development/ocaml-modules/lambda-term/default.nix b/pkgs/development/ocaml-modules/lambda-term/default.nix index ba68c0463f8fef562769f7b48723e69d199e20fb..18fe235710f8fcfad1c1832224a2660fd8b39f51 100644 --- a/pkgs/development/ocaml-modules/lambda-term/default.nix +++ b/pkgs/development/ocaml-modules/lambda-term/default.nix @@ -1,26 +1,19 @@ -{ stdenv, fetchurl, libev, ocaml, findlib, dune -, zed, lwt_log, lwt_react -}: +{ stdenv, fetchurl, libev, buildDunePackage, zed, lwt_log, lwt_react }: -assert stdenv.lib.versionAtLeast ocaml.version "4.02"; - -stdenv.mkDerivation rec { +buildDunePackage rec { + pname = "lambda-term"; version = "1.13"; - name = "ocaml${ocaml.version}-lambda-term-${version}"; + + minimumOCamlVersion = "4.02"; src = fetchurl { - url = "https://github.com/diml/lambda-term/archive/${version}.tar.gz"; + url = "https://github.com/diml/${pname}/archive/${version}.tar.gz"; sha256 = "1hy5ryagqclgdm9lzh1qil5mrynlypv7mn6qm858hdcnmz9zzn0l"; }; - buildInputs = [ libev ocaml findlib dune ]; - + buildInputs = [ libev ]; propagatedBuildInputs = [ zed lwt_log lwt_react ]; - buildPhase = "dune build -p lambda-term"; - - inherit (dune) installPhase; - hasSharedObjects = true; meta = { description = "Terminal manipulation library for OCaml"; @@ -41,7 +34,6 @@ stdenv.mkDerivation rec { homepage = https://github.com/diml/lambda-term; license = stdenv.lib.licenses.bsd3; - platforms = ocaml.meta.platforms or []; maintainers = [ stdenv.lib.maintainers.gal_bolle ]; diff --git a/pkgs/development/ocaml-modules/linenoise/default.nix b/pkgs/development/ocaml-modules/linenoise/default.nix index e7120ad385727fda22cc5ea48a7fd3dc431511e5..b6b9b4163ff94e8ac4f274672657c3854b240e62 100644 --- a/pkgs/development/ocaml-modules/linenoise/default.nix +++ b/pkgs/development/ocaml-modules/linenoise/default.nix @@ -1,29 +1,24 @@ -{ stdenv, fetchFromGitHub, ocaml, dune, findlib, result }: +{ stdenv, fetchFromGitHub, buildDunePackage, result }: -if !stdenv.lib.versionAtLeast ocaml.version "4.02" -then throw "linenoise is not available for OCaml ${ocaml.version}" -else - -stdenv.mkDerivation rec { - name = "ocaml${ocaml.version}-linenoise-${version}"; +buildDunePackage rec { + pname = "linenoise"; version = "1.1.0"; + + minimumOCamlVersion = "4.02"; + src = fetchFromGitHub { owner = "fxfactorial"; - repo = "ocaml-linenoise"; + repo = "ocaml-${pname}"; rev = "v${version}"; sha256 = "1h6rqfgmhmd7p5z8yhk6zkbrk4yzw1v2fgwas2b7g3hqs6y0xj0q"; }; - buildInputs = [ ocaml findlib dune ]; propagatedBuildInputs = [ result ]; - inherit (dune) installPhase; - meta = { description = "OCaml bindings to linenoise"; license = stdenv.lib.licenses.bsd3; maintainers = [ stdenv.lib.maintainers.vbgl ]; - inherit (ocaml.meta) platforms; inherit (src.meta) homepage; }; } diff --git a/pkgs/development/ocaml-modules/logs/default.nix b/pkgs/development/ocaml-modules/logs/default.nix index aead4b4756f3b067a60fcd2be6a6cd92956c82fc..4b67b23d97b69ced873018558e8333cfedb07c3f 100644 --- a/pkgs/development/ocaml-modules/logs/default.nix +++ b/pkgs/development/ocaml-modules/logs/default.nix @@ -16,8 +16,6 @@ stdenv.mkDerivation rec { sha256 = "1khbn7jqpid83zn8rvyh1x1sirls7zc878zj4fz985m5xlsfy853"; }; - unpackCmd = "tar xjf $src"; - buildInputs = [ ocaml findlib ocamlbuild topkg fmt cmdliner lwt ]; propagatedBuildInputs = [ result ]; diff --git a/pkgs/development/ocaml-modules/lru/default.nix b/pkgs/development/ocaml-modules/lru/default.nix index 3e474c5653a73deb5b93e7de490149c577c1226f..d6ff17211994fb5479f4838f17c9cf90cdfd9703 100644 --- a/pkgs/development/ocaml-modules/lru/default.nix +++ b/pkgs/development/ocaml-modules/lru/default.nix @@ -9,8 +9,6 @@ stdenv.mkDerivation rec { sha256 = "0bd7js9rrma1fjjjjc3fgr9l5fjbhgihx2nsaf96g2b35iiaimd0"; }; - unpackCmd = "tar -xjf $curSrc"; - buildInputs = [ ocaml findlib ocamlbuild topkg ]; propagatedBuildInputs = [ psq ]; diff --git a/pkgs/development/ocaml-modules/lwt/4.x.nix b/pkgs/development/ocaml-modules/lwt/4.x.nix index f43a65065b9216b207eaca9f066dc55cc2491f34..105104bc308d58bf80447495a0415854e379257b 100644 --- a/pkgs/development/ocaml-modules/lwt/4.x.nix +++ b/pkgs/development/ocaml-modules/lwt/4.x.nix @@ -1,35 +1,29 @@ -{ stdenv, fetchzip, pkgconfig, ncurses, libev, dune -, ocaml, findlib, cppo -, ocaml-migrate-parsetree, ppx_tools_versioned, result +{ stdenv, fetchzip, pkgconfig, ncurses, libev, buildDunePackage, ocaml +, cppo, ocaml-migrate-parsetree, ppx_tools_versioned, result }: let inherit (stdenv.lib) optional versionAtLeast; in -stdenv.mkDerivation rec { +buildDunePackage rec { + pname = "lwt"; version = "4.1.0"; - name = "ocaml${ocaml.version}-lwt-${version}"; src = fetchzip { - url = "https://github.com/ocsigen/lwt/archive/${version}.tar.gz"; + url = "https://github.com/ocsigen/${pname}/archive/${version}.tar.gz"; sha256 = "16wnc61kfj54z4q8sn9f5iik37pswz328hcz3z6rkza3kh3s6wmm"; }; nativeBuildInputs = [ pkgconfig ]; - buildInputs = [ ocaml findlib dune cppo - ocaml-migrate-parsetree ppx_tools_versioned - ] ++ optional (!versionAtLeast ocaml.version "4.07") ncurses; + buildInputs = [ cppo ocaml-migrate-parsetree ppx_tools_versioned ] + ++ optional (!versionAtLeast ocaml.version "4.07") ncurses; propagatedBuildInputs = [ libev result ]; configurePhase = "ocaml src/util/configure.ml -use-libev true"; - buildPhase = "jbuilder build -p lwt"; - inherit (dune) installPhase; meta = { homepage = "https://ocsigen.org/lwt/"; description = "A cooperative threads library for OCaml"; maintainers = [ stdenv.lib.maintainers.vbgl ]; license = stdenv.lib.licenses.lgpl21; - inherit (ocaml.meta) platforms; }; } - diff --git a/pkgs/development/ocaml-modules/lwt/ppx.nix b/pkgs/development/ocaml-modules/lwt/ppx.nix index 89e326557b5d5946a2c42736d58c74af02e1636a..7ba22a025f49f0980d73f95f8225c94eb75845ae 100644 --- a/pkgs/development/ocaml-modules/lwt/ppx.nix +++ b/pkgs/development/ocaml-modules/lwt/ppx.nix @@ -1,19 +1,15 @@ -{ stdenv, dune, ocaml, findlib, lwt, ppx_tools_versioned }: +{ stdenv, buildDunePackage, lwt, ppx_tools_versioned }: -stdenv.mkDerivation { - name = "ocaml${ocaml.version}-lwt_ppx-${lwt.version}"; +buildDunePackage { + pname = "lwt_ppx"; - inherit (lwt) src; - - buildInputs = [ dune ocaml findlib ppx_tools_versioned ]; + inherit (lwt) src version; + buildInputs = [ ppx_tools_versioned ]; propagatedBuildInputs = [ lwt ]; - buildPhase = "dune build -p lwt_ppx"; - installPhase = "${dune.installPhase} lwt_ppx.install"; - meta = { description = "Ppx syntax extension for Lwt"; - inherit (lwt.meta) license platforms homepage maintainers; + inherit (lwt.meta) license homepage maintainers; }; } diff --git a/pkgs/development/ocaml-modules/lwt_log/default.nix b/pkgs/development/ocaml-modules/lwt_log/default.nix index a3d34b190b86fd65a5d3ee7377fab7e7e308eeae..7eea297e3eeb5ae003a023d8833b05df5b859b99 100644 --- a/pkgs/development/ocaml-modules/lwt_log/default.nix +++ b/pkgs/development/ocaml-modules/lwt_log/default.nix @@ -1,33 +1,24 @@ -{ stdenv, fetchFromGitHub, ocaml, findlib, dune, lwt }: +{ stdenv, fetchFromGitHub, buildDunePackage, lwt }: -if !stdenv.lib.versionAtLeast ocaml.version "4.02" -then throw "lwt_log is not available for OCaml ${ocaml.version}" -else - -stdenv.mkDerivation rec { +buildDunePackage rec { + pname = "lwt_log"; version = "1.1.0"; - name = "ocaml${ocaml.version}-lwt_log-${version}"; + + minimumOCamlVersion = "4.02"; src = fetchFromGitHub { owner = "aantron"; - repo = "lwt_log"; + repo = pname; rev = version; sha256 = "1c58gkqfvyf2j11jwj2nh4iq999wj9xpnmr80hz9d0nk9fv333pi"; }; - buildInputs = [ ocaml findlib dune ]; - propagatedBuildInputs = [ lwt ]; - buildPhase = "dune build -p lwt_log"; - - inherit (dune) installPhase; - meta = { description = "Lwt logging library (deprecated)"; homepage = "https://github.com/aantron/lwt_log"; license = stdenv.lib.licenses.lgpl21; - inherit (ocaml.meta) platforms; maintainers = [ stdenv.lib.maintainers.vbgl ]; }; } diff --git a/pkgs/development/ocaml-modules/lwt_react/default.nix b/pkgs/development/ocaml-modules/lwt_react/default.nix index 4d505b23ae0e2642b14c9ca512d1008715c40347..41276668ecc95cc081a41325dd0d09216ad73b89 100644 --- a/pkgs/development/ocaml-modules/lwt_react/default.nix +++ b/pkgs/development/ocaml-modules/lwt_react/default.nix @@ -16,6 +16,7 @@ stdenv.mkDerivation rec { meta = { description = "Helpers for using React with Lwt"; - inherit (lwt.meta) homepage license maintainers platforms; + inherit (lwt.meta) homepage license maintainers; + inherit (ocaml.meta) platforms; }; } diff --git a/pkgs/development/ocaml-modules/lwt_ssl/default.nix b/pkgs/development/ocaml-modules/lwt_ssl/default.nix index a06e72529864ac8db88428abec0ac9da1760b914..49c2b7de39802c8e30acec04eb2fa4e5bd6515c0 100644 --- a/pkgs/development/ocaml-modules/lwt_ssl/default.nix +++ b/pkgs/development/ocaml-modules/lwt_ssl/default.nix @@ -1,28 +1,22 @@ -{ stdenv, fetchzip, ocaml, findlib, dune, ssl, lwt }: +{ stdenv, fetchzip, buildDunePackage, ssl, lwt }: -if !stdenv.lib.versionAtLeast ocaml.version "4.02" -then throw "lwt_ssl is not available for OCaml ${ocaml.version}" -else - -stdenv.mkDerivation rec { +buildDunePackage rec { + pname = "lwt_ssl"; version = "1.1.2"; - name = "ocaml${ocaml.version}-lwt_ssl-${version}"; + + minimumOCamlVersion = "4.02"; src = fetchzip { - url = "https://github.com/aantron/lwt_ssl/archive/${version}.tar.gz"; + url = "https://github.com/aantron/${pname}/archive/${version}.tar.gz"; sha256 = "1q0an3djqjxv83v3iswi7m81braqx93kcrcwrxwmf6jzhdm4pn15"; }; - buildInputs = [ ocaml findlib dune ]; propagatedBuildInputs = [ ssl lwt ]; - inherit (dune) installPhase; - meta = { homepage = "https://github.com/aantron/lwt_ssl"; description = "OpenSSL binding with concurrent I/O"; license = stdenv.lib.licenses.lgpl21; maintainers = [ stdenv.lib.maintainers.vbgl ]; - inherit (ocaml.meta) platforms; }; } diff --git a/pkgs/development/ocaml-modules/mstruct/default.nix b/pkgs/development/ocaml-modules/mstruct/default.nix index 9184975f0698fe5c6ea509a942c7100713db4ecd..ae26f879ef8cb0140dc18ca961635403fae39730 100644 --- a/pkgs/development/ocaml-modules/mstruct/default.nix +++ b/pkgs/development/ocaml-modules/mstruct/default.nix @@ -1,33 +1,24 @@ -{ stdenv, fetchFromGitHub, ocaml, findlib, dune -, cstruct -}: +{ stdenv, fetchFromGitHub, buildDunePackage, cstruct }: -if !stdenv.lib.versionAtLeast ocaml.version "4.02" -then throw "mstruct is not available for OCaml ${ocaml.version}" -else - -stdenv.mkDerivation rec { +buildDunePackage rec { + pname = "mstruct"; version = "1.4.0"; - name = "ocaml${ocaml.version}-mstruct-${version}"; + + minimumOCamlVersion = "4.02"; src = fetchFromGitHub { owner = "mirage"; - repo = "ocaml-mstruct"; + repo = "ocaml-${pname}"; rev = "v${version}"; sha256 = "1p4ygwzs3n1fj4apfib0z0sabpph21bkq1dgjk4bsa59pq4prncm"; }; - buildInputs = [ ocaml findlib dune ]; - propagatedBuildInputs = [ cstruct ]; - inherit (dune) installPhase; - meta = { description = "A thin mutable layer on top of cstruct"; license = stdenv.lib.licenses.isc; maintainers = [ stdenv.lib.maintainers.vbgl ]; inherit (src.meta) homepage; - inherit (ocaml.meta) platforms; }; } diff --git a/pkgs/development/ocaml-modules/mtime/default.nix b/pkgs/development/ocaml-modules/mtime/default.nix index 69921537f5b586de151279b6edf6bfa35110c23a..b067fd99ded43b7be078c8164afeb2582f6b1431 100644 --- a/pkgs/development/ocaml-modules/mtime/default.nix +++ b/pkgs/development/ocaml-modules/mtime/default.nix @@ -23,8 +23,6 @@ stdenv.mkDerivation { inherit (param) sha256; }; - unpackCmd = "tar xjf $src"; - buildInputs = [ ocaml findlib ocamlbuild topkg ] ++ stdenv.lib.optional jsooSupport js_of_ocaml; diff --git a/pkgs/development/ocaml-modules/nocrypto/default.nix b/pkgs/development/ocaml-modules/nocrypto/default.nix index 67de1863e004aa8deee292a0baeea57f67c2978e..813b4d7f7a4a84ed1be5acab9ceec9be361ce6e9 100644 --- a/pkgs/development/ocaml-modules/nocrypto/default.nix +++ b/pkgs/development/ocaml-modules/nocrypto/default.nix @@ -16,8 +16,6 @@ stdenv.mkDerivation rec { sha256 = "0zshi9hlhcz61n5z1k6fx6rsi0pl4xgahsyl2jp0crqkaf3hqwlg"; }; - unpackCmd = "tar xjf $curSrc"; - patches = [ (fetchpatch { url = "https://raw.githubusercontent.com/ocaml/opam-repository/master/packages/nocrypto/nocrypto.0.5.4-1/files/0001-add-missing-runtime-dependencies-in-_tags.patch"; diff --git a/pkgs/development/ocaml-modules/notty/default.nix b/pkgs/development/ocaml-modules/notty/default.nix index 2dffb472f3e8c14ef0ca3dba7644443039e34bee..f273f28a71ebafb01ce7efa7bca0e13302a95464 100644 --- a/pkgs/development/ocaml-modules/notty/default.nix +++ b/pkgs/development/ocaml-modules/notty/default.nix @@ -19,8 +19,6 @@ stdenv.mkDerivation rec { sha256 = "0wdfmgx1mz77s7m451vy8r9i4iqwn7s7b39kpbpckf3w9417riq0"; }; - unpackCmd = "tar -xjf $curSrc"; - buildInputs = [ ocaml findlib ocamlbuild topkg ocb-stubblr ]; propagatedBuildInputs = [ result uucp uuseg uutf ] ++ optional withLwt lwt; diff --git a/pkgs/development/ocaml-modules/ocaml-migrate-parsetree/default.nix b/pkgs/development/ocaml-modules/ocaml-migrate-parsetree/default.nix index e8074a51e52fa7134bb608a4cb1b6483d8914ffc..a9496576875cab158fd3ec5e444848ae8f33618f 100644 --- a/pkgs/development/ocaml-modules/ocaml-migrate-parsetree/default.nix +++ b/pkgs/development/ocaml-modules/ocaml-migrate-parsetree/default.nix @@ -1,30 +1,22 @@ -{ stdenv, fetchFromGitHub, ocaml, findlib, ocamlbuild, dune, result }: +{ stdenv, fetchFromGitHub, buildDunePackage, result }: -if !stdenv.lib.versionAtLeast ocaml.version "4.02" -then throw "ocaml-migrate-parsetree is not available for OCaml ${ocaml.version}" -else - -stdenv.mkDerivation rec { - name = "ocaml${ocaml.version}-ocaml-migrate-parsetree-${version}"; +buildDunePackage rec { + pname = "ocaml-migrate-parsetree"; version = "1.1.0"; src = fetchFromGitHub { owner = "ocaml-ppx"; - repo = "ocaml-migrate-parsetree"; + repo = pname; rev = "v${version}"; sha256 = "1d2n349d1cqm3dr09mwy5m9rfd4bkkqvri5i94wknpsrr35vnrr1"; }; - buildInputs = [ ocaml findlib ocamlbuild dune ]; propagatedBuildInputs = [ result ]; - inherit (dune) installPhase; - meta = { description = "Convert OCaml parsetrees between different major versions"; license = stdenv.lib.licenses.lgpl21; maintainers = [ stdenv.lib.maintainers.vbgl ]; inherit (src.meta) homepage; - inherit (ocaml.meta) platforms; }; } diff --git a/pkgs/development/ocaml-modules/octavius/default.nix b/pkgs/development/ocaml-modules/octavius/default.nix index 57e3c9bfa745114dc6042abd8d16fad34ae17eaf..6c2ee821c0d5982d8e88ca64d75f58af7acbbe1e 100644 --- a/pkgs/development/ocaml-modules/octavius/default.nix +++ b/pkgs/development/ocaml-modules/octavius/default.nix @@ -10,8 +10,6 @@ stdenv.mkDerivation { sha256 = "02milzzlr4xk5aymg2fjz27f528d5pyscqvld3q0dm41zcpkz5ml"; }; - unpackCmd = "tar xjf $src"; - buildInputs = [ ocaml findlib ocamlbuild topkg ]; inherit (topkg) buildPhase installPhase; diff --git a/pkgs/development/ocaml-modules/odoc/default.nix b/pkgs/development/ocaml-modules/odoc/default.nix index 3b1005106272c69e0302c32a4ffcc0d3335a18bb..0b342a654e6ecd41333940b575ce16bf1b9a3436 100644 --- a/pkgs/development/ocaml-modules/odoc/default.nix +++ b/pkgs/development/ocaml-modules/odoc/default.nix @@ -1,30 +1,22 @@ -{ stdenv, fetchFromGitHub, ocaml, findlib, dune -, bos, cmdliner, doc-ock-html, doc-ock-xml -}: +{ stdenv, fetchFromGitHub, buildDunePackage, cppo, bos, cmdliner, tyxml }: + +buildDunePackage rec { + pname = "odoc"; + version = "1.3.0"; -stdenv.mkDerivation rec { - name = "ocaml${ocaml.version}-odoc-${version}"; - version = "1.2.0"; src = fetchFromGitHub { owner = "ocaml"; - repo = "odoc"; - rev = "v${version}"; - sha256 = "0ixnhfpm1nw4bvjj8qhcyy283pdr5acqpg5wxwq3n1l4mad79cgh"; + repo = pname; + rev = version; + sha256 = "0hjan5aj5zk8j8qyagv9r4hqm469mh207cv2m6kxwgnw0c3cz7sy"; }; - buildInputs = [ ocaml findlib dune cmdliner ]; - - propagatedBuildInputs = [ bos doc-ock-html doc-ock-xml ]; - - configurePhase = "ocaml bin/set-etc bin/odoc_etc.ml $out/etc/odoc"; - - inherit (dune) installPhase; + buildInputs = [ cppo bos cmdliner tyxml ]; meta = { description = "A documentation generator for OCaml"; license = stdenv.lib.licenses.isc; maintainers = [ stdenv.lib.maintainers.vbgl ]; - inherit (ocaml.meta) platforms; inherit (src.meta) homepage; }; } diff --git a/pkgs/development/ocaml-modules/otfm/default.nix b/pkgs/development/ocaml-modules/otfm/default.nix index 05c25c81d5a0488c4213d9f86ae808d1ebb41fbc..081876f7075cca3b697c7823afeb0f8e578f7385 100644 --- a/pkgs/development/ocaml-modules/otfm/default.nix +++ b/pkgs/development/ocaml-modules/otfm/default.nix @@ -21,8 +21,6 @@ stdenv.mkDerivation rec { propagatedBuildInputs = [ uutf result ]; - unpackCmd = "tar xjf $src"; - inherit (topkg) buildPhase installPhase; meta = with stdenv.lib; { diff --git a/pkgs/development/ocaml-modules/ppx_blob/default.nix b/pkgs/development/ocaml-modules/ppx_blob/default.nix index 72e0e5e121ad7ee6cb607892eb16e12aa8885074..3b72853e7828f9b5086cc061ae3d9105dd762365 100644 --- a/pkgs/development/ocaml-modules/ppx_blob/default.nix +++ b/pkgs/development/ocaml-modules/ppx_blob/default.nix @@ -1,26 +1,16 @@ -{ stdenv, fetchurl, ocaml, findlib, dune, alcotest -, ocaml-migrate-parsetree -}: +{ stdenv, fetchurl, buildDunePackage, alcotest, ocaml-migrate-parsetree }: -stdenv.mkDerivation rec { - name = "ocaml${ocaml.version}-ppx_blob-${version}"; +buildDunePackage rec { + pname = "ppx_blob"; version = "0.4.0"; src = fetchurl { - url = "https://github.com/johnwhitington/ppx_blob/releases/download/${version}/ppx_blob-${version}.tbz"; + url = "https://github.com/johnwhitington/${pname}/releases/download/${version}/ppx_blob-${version}.tbz"; sha256 = "1xmslk1mwdzhy1bydgsjlcb7h544c39hvxa8lywp8w72gaggjl16"; }; - unpackCmd = "tar xjf $curSrc"; - - buildInputs = [ ocaml findlib dune alcotest ocaml-migrate-parsetree ]; - - buildPhase = "dune build -p ppx_blob"; - + buildInputs = [ alcotest ocaml-migrate-parsetree ]; doCheck = true; - checkPhase = "dune runtest -p ppx_blob"; - - inherit (dune) installPhase; meta = with stdenv.lib; { homepage = https://github.com/johnwhitington/ppx_blob; diff --git a/pkgs/development/ocaml-modules/ppx_derivers/default.nix b/pkgs/development/ocaml-modules/ppx_derivers/default.nix index edd086067610133d0cd95ca92a97d490ad609284..0482e04b1c4adbce168aba57f25588bdaba34675 100644 --- a/pkgs/development/ocaml-modules/ppx_derivers/default.nix +++ b/pkgs/development/ocaml-modules/ppx_derivers/default.nix @@ -1,29 +1,22 @@ -{ stdenv, fetchFromGitHub, ocaml, findlib, dune }: +{ stdenv, fetchFromGitHub, buildDunePackage }: -if !stdenv.lib.versionAtLeast ocaml.version "4.02" -then throw "ppx_derivers is not available for OCaml ${ocaml.version}" -else - -stdenv.mkDerivation rec { - name = "ocaml${ocaml.version}-ppx_derivers-${version}"; +buildDunePackage rec { + pname = "ppx_derivers"; version = "1.2"; + minimumOCamlVersion = "4.02"; + src = fetchFromGitHub { owner = "diml"; - repo = "ppx_derivers"; + repo = pname; rev = version; sha256 = "0bnhihl1w31as5w2czly1v3d6pbir9inmgsjg2cj6aaj9v1dzd85"; }; - buildInputs = [ ocaml findlib dune ]; - - inherit (dune) installPhase; - meta = { description = "Shared [@@deriving] plugin registry"; license = stdenv.lib.licenses.bsd3; maintainers = [ stdenv.lib.maintainers.vbgl ]; inherit (src.meta) homepage; - inherit (ocaml.meta) platforms; }; } diff --git a/pkgs/development/ocaml-modules/ppx_gen_rec/default.nix b/pkgs/development/ocaml-modules/ppx_gen_rec/default.nix index 4c458b983d33b7b935a0ba1a3713e83593f132fc..5d45ee90c2e9378ae948e243b8427ebf40b46d82 100644 --- a/pkgs/development/ocaml-modules/ppx_gen_rec/default.nix +++ b/pkgs/development/ocaml-modules/ppx_gen_rec/default.nix @@ -1,30 +1,22 @@ -{ stdenv, fetchurl, ocaml, findlib, dune, ocaml-migrate-parsetree }: +{ stdenv, fetchurl, buildDunePackage, ocaml-migrate-parsetree }: -assert stdenv.lib.versionAtLeast (stdenv.lib.getVersion ocaml) "4.01"; - -stdenv.mkDerivation rec { +buildDunePackage rec { pname = "ppx_gen_rec"; - name = "ocaml${ocaml.version}-${pname}-${version}"; version = "1.0.0"; + minimumOCamlVersion = "4.01"; + src = fetchurl { url = "https://github.com/flowtype/ocaml-${pname}/releases/download/v${version}/${pname}-${version}.tbz"; sha256 = "0qy0wa3rd5yh1612jijadi1yddfslpsmmmf69phi2dhr3vmkhza7"; }; - unpackCmd = "tar xjf $src"; - - buildInputs = [ ocaml findlib dune ocaml-migrate-parsetree ]; - - buildPhase = "dune build -p ppx_gen_rec"; - - inherit (dune) installPhase; + buildInputs = [ ocaml-migrate-parsetree ]; meta = with stdenv.lib; { homepage = https://github.com/flowtype/ocaml-ppx_gen_rec; description = "ocaml preprocessor that generates a recursive module"; license = licenses.mit; - platforms = ocaml.meta.platforms or []; maintainers = [ maintainers.frontsideair ]; }; } diff --git a/pkgs/development/ocaml-modules/ppxlib/default.nix b/pkgs/development/ocaml-modules/ppxlib/default.nix index 589eb91333707657b7b900b4ff1e5ea624467d9d..a1e43d6d13db87e4b880ed9744cbac9bd669de39 100644 --- a/pkgs/development/ocaml-modules/ppxlib/default.nix +++ b/pkgs/development/ocaml-modules/ppxlib/default.nix @@ -1,34 +1,26 @@ -{ stdenv, fetchFromGitHub, ocaml, findlib, dune +{ stdenv, fetchFromGitHub, buildDunePackage , ocaml-compiler-libs, ocaml-migrate-parsetree, ppx_derivers, stdio }: -stdenv.mkDerivation rec { +buildDunePackage rec { + pname = "ppxlib"; version = "0.3.1"; - name = "ocaml${ocaml.version}-ppxlib-${version}"; src = fetchFromGitHub { owner = "ocaml-ppx"; - repo = "ppxlib"; + repo = pname; rev = version; sha256 = "0qpjl84x8abq9zivifb0k8ld7fa1lrhkbajmmccvfv06ja3as1v4"; }; - buildInputs = [ ocaml findlib dune ]; - propagatedBuildInputs = [ ocaml-compiler-libs ocaml-migrate-parsetree ppx_derivers stdio ]; - buildPhase = "dune build"; - - inherit (dune) installPhase; - meta = { description = "Comprehensive ppx tool set"; license = stdenv.lib.licenses.mit; maintainers = [ stdenv.lib.maintainers.vbgl ]; inherit (src.meta) homepage; - inherit (ocaml.meta) platforms; }; - } diff --git a/pkgs/development/ocaml-modules/psq/default.nix b/pkgs/development/ocaml-modules/psq/default.nix index fc3fa81a02a9cc400d325ac8f7ed3133bbba6c92..08b9c10d982173df94b58301b408d90f7507430a 100644 --- a/pkgs/development/ocaml-modules/psq/default.nix +++ b/pkgs/development/ocaml-modules/psq/default.nix @@ -13,8 +13,6 @@ stdenv.mkDerivation rec { sha256 = "08ghgdivbjrxnaqc3hsb69mr9s2ql5ds0fb97b7z6zimzqibz6lp"; }; - unpackCmd = "tar -xjf $curSrc"; - buildInputs = [ ocaml findlib ocamlbuild topkg ]; inherit (topkg) buildPhase installPhase; diff --git a/pkgs/development/ocaml-modules/ptime/default.nix b/pkgs/development/ocaml-modules/ptime/default.nix index b0067d44911f2c420b99373454b6fb6908df3900..4ac473fef0061188dcb5117952c0639da3a487ec 100644 --- a/pkgs/development/ocaml-modules/ptime/default.nix +++ b/pkgs/development/ocaml-modules/ptime/default.nix @@ -9,8 +9,6 @@ stdenv.mkDerivation rec { sha256 = "0z2snhda8bg136xkw2msw6k2dz84vb49p8bgzrxfs8mawdlk0kkg"; }; - unpackCmd = "tar -xf $curSrc"; - buildInputs = [ ocaml findlib ocamlbuild topkg js_of_ocaml ]; propagatedBuildInputs = [ result ]; diff --git a/pkgs/development/ocaml-modules/re/default.nix b/pkgs/development/ocaml-modules/re/default.nix index c4215b98a50fec3b67cdfbe6362b59040c7df360..b2413b7dddd638b7c7c53f92b48c57c165e5a78f 100644 --- a/pkgs/development/ocaml-modules/re/default.nix +++ b/pkgs/development/ocaml-modules/re/default.nix @@ -1,29 +1,22 @@ -{ stdenv, fetchzip, ocaml, findlib, dune, ounit, seq }: +{ stdenv, fetchzip, buildDunePackage, ounit, seq }: -if !stdenv.lib.versionAtLeast ocaml.version "4.02" -then throw "re is not available for OCaml ${ocaml.version}" -else - -stdenv.mkDerivation rec { - name = "ocaml${ocaml.version}-re-${version}"; +buildDunePackage rec { + pname = "re"; version = "1.8.0"; + minimumOCamlVersion = "4.02"; + src = fetchzip { url = "https://github.com/ocaml/ocaml-re/archive/${version}.tar.gz"; sha256 = "0ch6hvmm4ym3w2vghjxf3ka5j1023a37980fqi4zcb7sx756z20i"; }; - buildInputs = [ ocaml findlib dune ounit ]; + buildInputs = [ ounit ]; propagatedBuildInputs = [ seq ]; - doCheck = true; - checkPhase = "jbuilder runtest"; - - inherit (dune) installPhase; meta = { homepage = https://github.com/ocaml/ocaml-re; - platforms = ocaml.meta.platforms or []; description = "Pure OCaml regular expressions, with support for Perl and POSIX-style strings"; license = stdenv.lib.licenses.lgpl2; maintainers = with stdenv.lib.maintainers; [ vbgl ]; diff --git a/pkgs/development/ocaml-modules/react/default.nix b/pkgs/development/ocaml-modules/react/default.nix index 920ee05244a149cefa715c736a212eb3fe5ea41b..9d070b962b4cb48af3a7b1ab21c0237d76d475cc 100644 --- a/pkgs/development/ocaml-modules/react/default.nix +++ b/pkgs/development/ocaml-modules/react/default.nix @@ -8,7 +8,6 @@ stdenv.mkDerivation { sha256 = "1aj8w79gdd9xnrbz7s5p8glcb4pmimi8jp9f439dqnf6ih3mqb3v"; }; - unpackCmd = "tar xjf $src"; buildInputs = [ ocaml findlib topkg ocamlbuild ]; inherit (topkg) buildPhase installPhase; diff --git a/pkgs/development/ocaml-modules/rope/default.nix b/pkgs/development/ocaml-modules/rope/default.nix index 9e9ebea6b6a76ec3895d1c5b6c05acd59dc2d2b6..4353c606d6187efa3ef4799484240364bc761b8f 100644 --- a/pkgs/development/ocaml-modules/rope/default.nix +++ b/pkgs/development/ocaml-modules/rope/default.nix @@ -8,7 +8,6 @@ let param = sha256 = "06pkbnkad2ck50jn59ggwv154yd9vb01abblihvam6p27m4za1pc"; buildInputs = [ dune ]; extra = { - unpackCmd = "tar -xjf $curSrc"; buildPhase = "dune build -p rope"; inherit (dune) installPhase; }; diff --git a/pkgs/development/ocaml-modules/rresult/default.nix b/pkgs/development/ocaml-modules/rresult/default.nix index d1a796a58e51f060ac1eb59efdb0933515569790..270432b86e94276878f67154cf788c7583158734 100644 --- a/pkgs/development/ocaml-modules/rresult/default.nix +++ b/pkgs/development/ocaml-modules/rresult/default.nix @@ -2,14 +2,12 @@ stdenv.mkDerivation rec { name = "ocaml${ocaml.version}-rresult-${version}"; - version = "0.5.0"; + version = "0.6.0"; src = fetchurl { url = "http://erratique.ch/software/rresult/releases/rresult-${version}.tbz"; - sha256 = "1xxycxhdhaq8p9vhwi93s2mlxjwgm44fcxybx5vghzgbankz9yhm"; + sha256 = "1k69a3gvrk7f2cshwjzvk7818f0bwxhacgd14wxy6d4gmrggci86"; }; - unpackCmd = "tar xjf $src"; - buildInputs = [ ocaml findlib ocamlbuild topkg ]; inherit (topkg) buildPhase installPhase; diff --git a/pkgs/development/ocaml-modules/sequence/default.nix b/pkgs/development/ocaml-modules/sequence/default.nix index 59641458338f4d4f9beb215fd6deeedebebcecce..e5ead36d1c1972a437363cff712318113396efe5 100644 --- a/pkgs/development/ocaml-modules/sequence/default.nix +++ b/pkgs/development/ocaml-modules/sequence/default.nix @@ -1,28 +1,22 @@ -{ stdenv, fetchFromGitHub, ocaml, findlib, dune, qtest, result }: +{ stdenv, fetchFromGitHub, buildDunePackage, qtest, result }: -if !stdenv.lib.versionAtLeast ocaml.version "4.02" -then throw "sequence is not available for OCaml ${ocaml.version}" -else +buildDunePackage rec { + pname = "sequence"; + version = "1.1"; -let version = "1.1"; in - -stdenv.mkDerivation { - name = "ocaml${ocaml.version}-sequence-${version}"; + minimumOCamlVersion = "4.02"; src = fetchFromGitHub { owner = "c-cube"; - repo = "sequence"; + repo = pname; rev = version; sha256 = "08j37nldw47syq3yw4mzhhvya43knl0d7biddp0q9hwbaxhzgi44"; }; - buildInputs = [ ocaml findlib dune qtest ]; + buildInputs = [ qtest ]; propagatedBuildInputs = [ result ]; doCheck = true; - checkPhase = "dune runtest"; - - inherit (dune) installPhase; meta = { homepage = https://github.com/c-cube/sequence; @@ -34,6 +28,5 @@ stdenv.mkDerivation { sequence is iterated/folded on. ''; license = stdenv.lib.licenses.bsd2; - platforms = ocaml.meta.platforms or []; }; } diff --git a/pkgs/development/ocaml-modules/sqlexpr/default.nix b/pkgs/development/ocaml-modules/sqlexpr/default.nix index cad4dcafb6429ac833e18143c1fe76c6f2dcf243..7d988e27ff0ef4d91785a2c6e58367964d3a3b30 100644 --- a/pkgs/development/ocaml-modules/sqlexpr/default.nix +++ b/pkgs/development/ocaml-modules/sqlexpr/default.nix @@ -1,32 +1,24 @@ -{ stdenv, fetchurl, ocaml, findlib, dune, ocaml_lwt +{ stdenv, fetchurl, buildDunePackage, ocaml_lwt , lwt_ppx, ocaml-migrate-parsetree, ppx_tools_versioned, csv, ocaml_sqlite3 }: -stdenv.mkDerivation rec { +buildDunePackage rec { + pname = "sqlexpr"; version = "0.9.0"; - name = "ocaml${ocaml.version}-sqlexpr-${version}"; src = fetchurl { url = "https://github.com/mfp/ocaml-sqlexpr/releases/download/${version}/ocaml-sqlexpr-${version}.tar.gz"; sha256 = "0z0bkzi1mh0m39alzr2ds7hjpfxffx6azpfsj2wpaxrg64ks8ypd"; }; - buildInputs = [ ocaml findlib dune lwt_ppx ocaml-migrate-parsetree ppx_tools_versioned ]; - + buildInputs = [ lwt_ppx ocaml-migrate-parsetree ppx_tools_versioned ]; propagatedBuildInputs = [ ocaml_lwt csv ocaml_sqlite3 ]; - - buildPhase = "dune build -p sqlexpr"; - doCheck = true; - checkPhase = "dune runtest -p sqlexpr"; - - inherit (dune) installPhase; meta = { description = "Type-safe, convenient SQLite database access"; homepage = "https://github.com/mfp/ocaml-sqlexpr"; license = stdenv.lib.licenses.lgpl21; maintainers = [ stdenv.lib.maintainers.vbgl ]; - inherit (ocaml.meta) platforms; }; } diff --git a/pkgs/development/ocaml-modules/sqlexpr/ppx.nix b/pkgs/development/ocaml-modules/sqlexpr/ppx.nix index b908e173257ca44a43dc9a53ca0ab3eb9ae555f0..5ab6ff226f21e6d045859ccc517df147360898c5 100644 --- a/pkgs/development/ocaml-modules/sqlexpr/ppx.nix +++ b/pkgs/development/ocaml-modules/sqlexpr/ppx.nix @@ -1,15 +1,11 @@ -{ stdenv, ocaml, findlib, dune, sqlexpr, ounit +{ stdenv, buildDunePackage, sqlexpr, ounit , ppx_core, ppx_tools_versioned, re, lwt_ppx }: -stdenv.mkDerivation rec { - name = "ocaml${ocaml.version}-ppx_sqlexpr-${version}"; - inherit (sqlexpr) version src installPhase meta; - - buildInputs = [ ocaml findlib dune sqlexpr ounit ppx_core ppx_tools_versioned re lwt_ppx ]; - - buildPhase = "dune build -p ppx_sqlexpr"; +buildDunePackage { + pname = "ppx_sqlexpr"; + inherit (sqlexpr) version src meta; + buildInputs = [ sqlexpr ounit ppx_core ppx_tools_versioned re lwt_ppx ]; doCheck = true; - checkPhase = "dune runtest -p ppx_sqlexpr"; } diff --git a/pkgs/development/ocaml-modules/topkg/default.nix b/pkgs/development/ocaml-modules/topkg/default.nix index 3ff641ff93e585d9d2ac7a0b25a8f21f78054d67..3e6b78a7171900a216268bf06d97172b574dacd4 100644 --- a/pkgs/development/ocaml-modules/topkg/default.nix +++ b/pkgs/development/ocaml-modules/topkg/default.nix @@ -32,7 +32,6 @@ stdenv.mkDerivation rec { buildInputs = [ ocaml findlib ocamlbuild ]; propagatedBuildInputs = [ result ]; - unpackCmd = "tar xjf ${src}"; buildPhase = "${run} build"; createFindlibDestdir = true; installPhase = "${opaline}/bin/opaline -prefix $out -libdir $OCAMLFIND_DESTDIR"; diff --git a/pkgs/development/ocaml-modules/tsdl/default.nix b/pkgs/development/ocaml-modules/tsdl/default.nix index 4230d098e0da46c73c8fe4e929d9c73175c684eb..230aab2617f136ef497a77cc97aeb490b177732f 100644 --- a/pkgs/development/ocaml-modules/tsdl/default.nix +++ b/pkgs/development/ocaml-modules/tsdl/default.nix @@ -22,8 +22,6 @@ stdenv.mkDerivation { buildInputs = [ ocaml findlib ocamlbuild topkg result ocb-stubblr ]; propagatedBuildInputs = [ SDL2 ctypes ]; - unpackCmd = "tar xjf $src"; - preConfigure = '' # The following is done to avoid an additional dependency (ncurses) # due to linking in the custom bytecode runtime. Instead, just diff --git a/pkgs/development/ocaml-modules/uchar/default.nix b/pkgs/development/ocaml-modules/uchar/default.nix index 8fddf883da5ddfd1fd25f2ef176484ec737e899b..c943d3ce35a8df4e4a942d02e6d3cf9e00e77d08 100644 --- a/pkgs/development/ocaml-modules/uchar/default.nix +++ b/pkgs/development/ocaml-modules/uchar/default.nix @@ -8,7 +8,6 @@ stdenv.mkDerivation { sha256 = "1w2saw7zanf9m9ffvz2lvcxvlm118pws2x1wym526xmydhqpyfa7"; }; - unpackCmd = "tar xjf $src"; buildInputs = [ ocaml ocamlbuild findlib opaline ]; buildPhase = "ocaml pkg/build.ml native=true native-dynlink=true"; installPhase = "opaline -libdir $OCAMLFIND_DESTDIR"; diff --git a/pkgs/development/ocaml-modules/uri/default.nix b/pkgs/development/ocaml-modules/uri/default.nix index 4959ef7b34a75dce97342938e10e21687001fd7c..6073411a24d2665781e696645163254213ca1652 100644 --- a/pkgs/development/ocaml-modules/uri/default.nix +++ b/pkgs/development/ocaml-modules/uri/default.nix @@ -1,33 +1,24 @@ -{ stdenv, fetchurl, ocaml, findlib, dune, ppx_sexp_conv, ounit +{ stdenv, fetchurl, buildDunePackage, ppx_sexp_conv, ounit , re, sexplib, stringext }: -stdenv.mkDerivation rec { +buildDunePackage rec { + pname = "uri"; version = "1.9.6"; - name = "ocaml${ocaml.version}-uri-${version}"; src = fetchurl { - url = "https://github.com/mirage/ocaml-uri/releases/download/v${version}/uri-${version}.tbz"; + url = "https://github.com/mirage/ocaml-${pname}/releases/download/v${version}/${pname}-${version}.tbz"; sha256 = "1m845rwd70wi4iijkrigyz939m1x84ba70hvv0d9sgk6971w4kz0"; }; - unpackCmd = "tar -xjf $curSrc"; - - buildInputs = [ ocaml findlib dune ounit ]; + buildInputs = [ ounit ]; propagatedBuildInputs = [ ppx_sexp_conv re sexplib stringext ]; - - buildPhase = "jbuilder build"; - doCheck = true; - checkPhase = "jbuilder runtest"; - - inherit (dune) installPhase; meta = { homepage = "https://github.com/mirage/ocaml-uri"; description = "RFC3986 URI parsing library for OCaml"; license = stdenv.lib.licenses.isc; maintainers = [ stdenv.lib.maintainers.vbgl ]; - inherit (ocaml.meta) platforms; }; } diff --git a/pkgs/development/ocaml-modules/uucd/default.nix b/pkgs/development/ocaml-modules/uucd/default.nix index 60429ca4b401793f479f58592a15b2878a50e353..683ace8cbc57d29b8e14ef4d6230d39b7dafb652 100644 --- a/pkgs/development/ocaml-modules/uucd/default.nix +++ b/pkgs/development/ocaml-modules/uucd/default.nix @@ -15,8 +15,6 @@ stdenv.mkDerivation rec { buildInputs = [ ocaml findlib ocamlbuild topkg ]; - unpackCmd = "tar xjf $src"; - inherit (topkg) buildPhase installPhase; propagatedBuildInputs = [ xmlm ]; diff --git a/pkgs/development/ocaml-modules/uucp/default.nix b/pkgs/development/ocaml-modules/uucp/default.nix index 6e61d39fe8eadcc2e11cbfa8b513acbd4ed96b65..1d3e9f283ce81f0743ede26079b1f47dc1e04db3 100644 --- a/pkgs/development/ocaml-modules/uucp/default.nix +++ b/pkgs/development/ocaml-modules/uucp/default.nix @@ -21,8 +21,6 @@ stdenv.mkDerivation { propagatedBuildInputs = [ uchar ]; - unpackCmd = "tar xjf $src"; - buildPhase = "${topkg.buildPhase} --with-cmdliner false"; inherit (topkg) installPhase; diff --git a/pkgs/development/ocaml-modules/uuidm/default.nix b/pkgs/development/ocaml-modules/uuidm/default.nix index b295143c0bc396cf68f5e78a73cccce8444e8860..0c45e6c8af1888420887346fc9566d8d503cfe3f 100644 --- a/pkgs/development/ocaml-modules/uuidm/default.nix +++ b/pkgs/development/ocaml-modules/uuidm/default.nix @@ -2,14 +2,12 @@ stdenv.mkDerivation rec { version = "0.9.6"; - name = "uuidm-${version}"; + name = "uuidm-${version}"; src = fetchurl { url = "http://erratique.ch/software/uuidm/releases/uuidm-${version}.tbz"; sha256 = "0hz4fdx0x16k0pw9995vkz5d1hmzz6b16wck9li399rcbfnv5jlc"; }; - unpackCmd = "tar -xf $curSrc"; - buildInputs = [ ocaml findlib ocamlbuild topkg cmdliner ]; inherit (topkg) buildPhase installPhase; diff --git a/pkgs/development/ocaml-modules/uunf/default.nix b/pkgs/development/ocaml-modules/uunf/default.nix index 4b0ce9e899c8c01862970c9458960bc2be85ed72..e6ecec3145e454b84b46428c5dfe19cfd5af7e2b 100644 --- a/pkgs/development/ocaml-modules/uunf/default.nix +++ b/pkgs/development/ocaml-modules/uunf/default.nix @@ -19,8 +19,6 @@ stdenv.mkDerivation rec { propagatedBuildInputs = [ uchar ]; - unpackCmd = "tar xjf $src"; - inherit (topkg) buildPhase installPhase; meta = with stdenv.lib; { diff --git a/pkgs/development/ocaml-modules/uuseg/default.nix b/pkgs/development/ocaml-modules/uuseg/default.nix index a0ed74f7cda9f9df0538bbcbb2901684776b3e07..df56e904ab6796af1ade593fbaa6114827eee60a 100644 --- a/pkgs/development/ocaml-modules/uuseg/default.nix +++ b/pkgs/development/ocaml-modules/uuseg/default.nix @@ -18,8 +18,6 @@ stdenv.mkDerivation rec { buildInputs = [ ocaml findlib ocamlbuild cmdliner topkg uutf ]; propagatedBuildInputs = [ uucp uchar ]; - unpackCmd = "tar xjf $src"; - inherit (topkg) buildPhase installPhase; meta = with stdenv.lib; { diff --git a/pkgs/development/ocaml-modules/uutf/default.nix b/pkgs/development/ocaml-modules/uutf/default.nix index 95ec93d8584b0d6f4a10256316842366205fa290..9b6c1868ad329e351aced145a83c235ef6a3eba4 100644 --- a/pkgs/development/ocaml-modules/uutf/default.nix +++ b/pkgs/development/ocaml-modules/uutf/default.nix @@ -16,8 +16,6 @@ stdenv.mkDerivation rec { buildInputs = [ ocaml findlib ocamlbuild topkg cmdliner ]; propagatedBuildInputs = [ uchar ]; - unpackCmd = "tar xjf $src"; - inherit (topkg) buildPhase installPhase; meta = with stdenv.lib; { diff --git a/pkgs/development/ocaml-modules/vg/default.nix b/pkgs/development/ocaml-modules/vg/default.nix index 582b2dc8a2c0a018b769e5d3aebed9ff7c882808..5e0d715b0beb4f9ab68ab26833e6b58348cf65bb 100644 --- a/pkgs/development/ocaml-modules/vg/default.nix +++ b/pkgs/development/ocaml-modules/vg/default.nix @@ -32,8 +32,6 @@ stdenv.mkDerivation rec { ++ optionals pdfBackend [ uutf otfm ] ++ optionals htmlcBackend [ js_of_ocaml js_of_ocaml-ocamlbuild js_of_ocaml-ppx ]; - unpackCmd = "tar xjf $src"; - buildPhase = topkg.buildPhase + " --with-uutf ${boolToString pdfBackend}" + " --with-otfm ${boolToString pdfBackend}" diff --git a/pkgs/development/ocaml-modules/visitors/default.nix b/pkgs/development/ocaml-modules/visitors/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..506721f7bf5e9bed39c8e9792c45743e43d62967 --- /dev/null +++ b/pkgs/development/ocaml-modules/visitors/default.nix @@ -0,0 +1,23 @@ +{ stdenv, fetchurl, ocaml, findlib, ocamlbuild, cppo, ppx_tools, ppx_deriving, result }: + +stdenv.mkDerivation { + name = "ocaml${ocaml.version}-visitors-20171124"; + + src = fetchurl { + url = http://gallium.inria.fr/~fpottier/visitors/visitors-20171124.tar.gz; + sha256 = "04047k2v0pgwcdkgw7jk4955pgil0nj2ji0zfhmlqrdbinyfqzac"; + }; + + buildInputs = [ ocaml findlib ocamlbuild cppo ]; + propagatedBuildInputs = [ ppx_tools ppx_deriving result ]; + + createFindlibDestdir = true; + + meta = with stdenv.lib; { + homepage = https://gitlab.inria.fr/fpottier/visitors; + license = licenses.lgpl21; + description = "An OCaml syntax extension (technically, a ppx_deriving plugin) which generates object-oriented visitors for traversing and transforming data structures"; + inherit (ocaml.meta) platforms; + maintainers = [ maintainers.marsam ]; + }; +} diff --git a/pkgs/development/ocaml-modules/wtf8/default.nix b/pkgs/development/ocaml-modules/wtf8/default.nix index 58ce7778c417c896278a87660982e4e5f2162067..7f3686abb51ad74863c42e377de361bdc287b85c 100644 --- a/pkgs/development/ocaml-modules/wtf8/default.nix +++ b/pkgs/development/ocaml-modules/wtf8/default.nix @@ -1,30 +1,20 @@ -{ stdenv, fetchurl, ocaml, findlib, dune }: +{ stdenv, fetchurl, buildDunePackage }: -assert stdenv.lib.versionAtLeast (stdenv.lib.getVersion ocaml) "4.01"; - -stdenv.mkDerivation rec { +buildDunePackage rec { pname = "wtf8"; - name = "ocaml-${pname}-${version}"; version = "1.0.1"; + minimumOCamlVersion = "4.01"; + src = fetchurl { url = "https://github.com/flowtype/ocaml-${pname}/releases/download/v${version}/${pname}-${version}.tbz"; sha256 = "1msg3vycd3k8qqj61sc23qks541cxpb97vrnrvrhjnqxsqnh6ygq"; }; - unpackCmd = "tar xjf $src"; - - buildInputs = [ ocaml findlib dune ]; - - buildPhase = "dune build -p wtf8"; - - inherit (dune) installPhase; - meta = with stdenv.lib; { homepage = https://github.com/flowtype/ocaml-wtf8; description = "WTF-8 is a superset of UTF-8 that allows unpaired surrogates."; license = licenses.mit; - platforms = ocaml.meta.platforms or []; maintainers = [ maintainers.eqyiel ]; }; } diff --git a/pkgs/development/ocaml-modules/x509/default.nix b/pkgs/development/ocaml-modules/x509/default.nix index 44a25865c1a798878c4e541173da2eee30557267..8d4bd4c82b3907f704792e3c767d6db67a735c63 100644 --- a/pkgs/development/ocaml-modules/x509/default.nix +++ b/pkgs/development/ocaml-modules/x509/default.nix @@ -12,8 +12,6 @@ stdenv.mkDerivation rec { sha256 = "1c62mw9rnzq0rs3ihbhfs18nv4mdzwag7893hlqgji3wmaai70pk"; }; - unpackCmd = "tar -xjf $curSrc"; - buildInputs = [ ocaml findlib ocamlbuild topkg ppx_sexp_conv ounit cstruct-unix ]; propagatedBuildInputs = [ asn1-combinators astring nocrypto ]; diff --git a/pkgs/development/ocaml-modules/xmlm/default.nix b/pkgs/development/ocaml-modules/xmlm/default.nix index a1765296d57da0142cff3db0bc383854bd2fe4e2..d3166d4cd7323bf785f2b5ab9e907b901f2c4123 100644 --- a/pkgs/development/ocaml-modules/xmlm/default.nix +++ b/pkgs/development/ocaml-modules/xmlm/default.nix @@ -19,8 +19,6 @@ stdenv.mkDerivation rec { buildInputs = [ ocaml findlib ocamlbuild topkg ]; - unpackCmd = "tar xjf $src"; - inherit (topkg) buildPhase installPhase; meta = with stdenv.lib; { diff --git a/pkgs/development/ocaml-modules/zmq/default.nix b/pkgs/development/ocaml-modules/zmq/default.nix index a792877e0590a7ff8854e4b483ab3fca588a70b8..fe6a17e876b60d7e4ec327a932767e95f000913b 100644 --- a/pkgs/development/ocaml-modules/zmq/default.nix +++ b/pkgs/development/ocaml-modules/zmq/default.nix @@ -1,8 +1,9 @@ -{ stdenv, fetchFromGitHub, ocaml, findlib, dune, czmq, stdint }: +{ stdenv, fetchFromGitHub, buildDunePackage, czmq, stdint }: -stdenv.mkDerivation rec { - name = "ocaml${ocaml.version}-zmq-${version}"; +buildDunePackage rec { + pname = "zmq"; version = "20180726"; + src = fetchFromGitHub { owner = "issuu"; repo = "ocaml-zmq"; @@ -14,19 +15,13 @@ stdenv.mkDerivation rec { ./ocaml-zmq-issue43.patch ]; - buildInputs = [ ocaml findlib dune czmq ]; - + buildInputs = [ czmq ]; propagatedBuildInputs = [ stdint ]; - buildPhase = "dune build -p zmq"; - - inherit (dune) installPhase; - meta = with stdenv.lib; { description = "ZeroMQ bindings for OCaml"; license = licenses.mit; maintainers = with maintainers; [ akavel ]; inherit (src.meta) homepage; - inherit (ocaml.meta) platforms; }; } diff --git a/pkgs/development/ocaml-modules/zmq/lwt.nix b/pkgs/development/ocaml-modules/zmq/lwt.nix index 80c934b44d64d90f83d7d35effc65f2a7d1f4dea..65595992e2c1eedab54678375dba98b11c2a1f49 100644 --- a/pkgs/development/ocaml-modules/zmq/lwt.nix +++ b/pkgs/development/ocaml-modules/zmq/lwt.nix @@ -1,12 +1,8 @@ -{ stdenv, ocaml, findlib, dune, zmq, ocaml_lwt }: +{ stdenv, buildDunePackage, zmq, ocaml_lwt }: -stdenv.mkDerivation rec { - name = "ocaml${ocaml.version}-zmq-lwt-${version}"; - inherit (zmq) version src installPhase meta; - - buildInputs = [ ocaml findlib dune ]; +buildDunePackage rec { + pname = "zmq-lwt"; + inherit (zmq) version src meta; propagatedBuildInputs = [ zmq ocaml_lwt ]; - - buildPhase = "dune build -p zmq-lwt"; } diff --git a/pkgs/development/python-modules/Flask-PyMongo/default.nix b/pkgs/development/python-modules/Flask-PyMongo/default.nix index 7c37bdaddd510957f19639d061124008f07ebf00..f32f402a3256e9616a8a9b32ed94472504c79fe8 100644 --- a/pkgs/development/python-modules/Flask-PyMongo/default.nix +++ b/pkgs/development/python-modules/Flask-PyMongo/default.nix @@ -9,11 +9,11 @@ buildPythonPackage rec { pname = "Flask-PyMongo"; - version = "2.1.0"; + version = "2.2.0"; src = fetchPypi { inherit pname version; - sha256 = "0b99dd99985660ebbc4b34bb44550f88a527cbc573faa01febccce3c4ab28347"; + sha256 = "0yi1r13p3l1d5dpdfnyp239l6l17nwvyky8y62nmmqxlsp2ja9hi"; }; checkInputs = [ pytest ]; diff --git a/pkgs/development/python-modules/Logbook/default.nix b/pkgs/development/python-modules/Logbook/default.nix index 711f0f5457ba82399c2b12f03766d63820c5667d..5b0e10340bd6e8c27a368173666c841f77fb44f3 100644 --- a/pkgs/development/python-modules/Logbook/default.nix +++ b/pkgs/development/python-modules/Logbook/default.nix @@ -2,11 +2,11 @@ buildPythonPackage rec { pname = "Logbook"; - version = "1.4.0"; + version = "1.4.1"; src = fetchPypi { inherit pname version; - sha256 = "1n8wzm2nc99gbvb44y2fbb59sy3c4awkwfgy4pbwv7z892ykw2iw"; + sha256 = "1nsnz9qdcba85q57qbam6skfvq2k7savn64qdy44cjnh0vkmqdrj"; }; checkInputs = [ pytest ] ++ lib.optionals (!isPy3k) [ mock ]; diff --git a/pkgs/development/python-modules/WazeRouteCalculator/default.nix b/pkgs/development/python-modules/WazeRouteCalculator/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..e67d81eccf7e59b72c6c450b1fdbb64ec5e3aa8e --- /dev/null +++ b/pkgs/development/python-modules/WazeRouteCalculator/default.nix @@ -0,0 +1,24 @@ +{ stdenv, buildPythonPackage, fetchPypi +, requests }: + +buildPythonPackage rec { + pname = "WazeRouteCalculator"; + version = "0.6"; + + src = fetchPypi { + inherit pname version; + sha256 = "0zmnw4198a2kvqvsz1i4a3aa20r4afp2lai6fxbpq1ppv120h857"; + }; + + propagatedBuildInputs = [ requests ]; + + # there are no tests + doCheck = false; + + meta = with stdenv.lib; { + description = "Calculate actual route time and distance with Waze API"; + homepage = https://github.com/kovacsbalu/WazeRouteCalculator; + license = licenses.gpl3; + maintainers = with maintainers; [ peterhoeg ]; + }; +} diff --git a/pkgs/development/python-modules/aioh2/default.nix b/pkgs/development/python-modules/aioh2/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..fdeb5fb0082e32fad544823c22db686afd3554bd --- /dev/null +++ b/pkgs/development/python-modules/aioh2/default.nix @@ -0,0 +1,23 @@ +{ lib, buildPythonPackage, isPy3k, fetchPypi, h2, priority }: + +buildPythonPackage rec { + pname = "aioh2"; + version = "0.2.2"; + disabled = !isPy3k; + + src = fetchPypi { + inherit pname version; + sha256 = "03i24wzpw0mrnrpck3w6qy83iigwl7n99sdrndqzxfyrc69b99wd"; + }; + + propagatedBuildInputs = [ h2 priority ]; + + doCheck = false; # https://github.com/decentfox/aioh2/issues/17 + + meta = with lib; { + homepage = https://github.com/decentfox/aioh2; + description = "HTTP/2 implementation with hyper-h2 on Python 3 asyncio"; + license = licenses.bsd3; + maintainers = [ maintainers.qyliss ]; + }; +} diff --git a/pkgs/development/python-modules/aiohttp-remotes/default.nix b/pkgs/development/python-modules/aiohttp-remotes/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..51120d07121c0f309a14536e343d5d6031151433 --- /dev/null +++ b/pkgs/development/python-modules/aiohttp-remotes/default.nix @@ -0,0 +1,34 @@ +{ lib, fetchpatch, buildPythonPackage, fetchPypi +, aiohttp, pytest, pytestcov, pytest-aiohttp +}: + +buildPythonPackage rec { + pname = "aiohttp_remotes"; + version = "0.1.2"; + + src = fetchPypi { + inherit pname version; + sha256 = "43c3f7e1c5ba27f29fb4dbde5d43b900b5b5fc7e37bf7e35e6eaedabaec4a3fc"; + }; + + patches = [ + (fetchpatch { + url = https://github.com/aio-libs/aiohttp-remotes/commit/188772abcea038c31dae7d607e487eeed44391bc.patch; + sha256 = "0pb1y4jb8ar1szhnjiyj2sdmdk6z9h6c3wrxw59nv9kr3if5igvs"; + }) + ]; + + propagatedBuildInputs = [ aiohttp ]; + + checkInputs = [ pytest pytestcov pytest-aiohttp ]; + checkPhase = '' + python -m pytest + ''; + + meta = with lib; { + homepage = https://github.com/wikibusiness/aiohttp-remotes; + description = "A set of useful tools for aiohttp.web server"; + license = licenses.mit; + maintainers = [ maintainers.qyliss ]; + }; +} diff --git a/pkgs/development/python-modules/alerta-server/default.nix b/pkgs/development/python-modules/alerta-server/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..a16d54af2606bc38500714980608c4a4c3551c85 --- /dev/null +++ b/pkgs/development/python-modules/alerta-server/default.nix @@ -0,0 +1,27 @@ +{ stdenv, buildPythonPackage, fetchPypi, makeWrapper +, python-dateutil, requests, pymongo, raven, bcrypt, flask, pyjwt, flask-cors, psycopg2, pytz, flask-compress, jinja2 +}: + +buildPythonPackage rec { + pname = "alerta-server"; + version = "6.3.2"; + + src = fetchPypi { + inherit pname version; + sha256 = "0mp97scdz2scdzi9va99hghmjz25zssgwg07i6cldzkc8j71kax5"; + }; + + buildInputs = [ python-dateutil requests pymongo raven bcrypt flask pyjwt flask-cors psycopg2 pytz flask-compress jinja2 ]; + + doCheck = false; # We can't run the tests from Nix, because they rely on the presence of a working MongoDB server + + postInstall = '' + wrapProgram $out/bin/alertad --prefix PYTHONPATH : "$PYTHONPATH" + ''; + + meta = with stdenv.lib; { + homepage = https://alerta.io; + description = "Alerta Monitoring System server"; + license = licenses.asl20; + }; +} diff --git a/pkgs/development/python-modules/alerta/default.nix b/pkgs/development/python-modules/alerta/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..47125894e5b9d7958014cd8d3d8d1a9af0932cfe --- /dev/null +++ b/pkgs/development/python-modules/alerta/default.nix @@ -0,0 +1,27 @@ +{ stdenv, buildPythonPackage, fetchPypi, makeWrapper +, six, click, requests, pytz, tabulate +}: + +buildPythonPackage rec { + pname = "alerta"; + version = "6.3.1"; + + src = fetchPypi { + inherit pname version; + sha256 = "08l366g0arpd23bm7bzk0hpmfd3z6brb8p24rjwkb3gvafhk7cz9"; + }; + + buildInputs = [ six click requests pytz tabulate ]; + + doCheck = false; + + postInstall = '' + wrapProgram $out/bin/alerta --prefix PYTHONPATH : "$PYTHONPATH" + ''; + + meta = with stdenv.lib; { + homepage = https://alerta.io; + description = "Alerta Monitoring System command-line interface"; + license = licenses.asl20; + }; +} diff --git a/pkgs/development/python-modules/astral/default.nix b/pkgs/development/python-modules/astral/default.nix index 1be99b5d4ddef7d0447f0dc6bc8fe34b5b9f601c..577a92eb8910559cc05113dcf07f93fd3ac3184b 100644 --- a/pkgs/development/python-modules/astral/default.nix +++ b/pkgs/development/python-modules/astral/default.nix @@ -2,11 +2,11 @@ buildPythonPackage rec { pname = "astral"; - version = "1.6.1"; + version = "1.7.1"; src = fetchPypi { inherit pname version; - sha256 = "ab0c08f2467d35fcaeb7bad15274743d3ac1ad18b5391f64a0058a9cd192d37d"; + sha256 = "01raz1c29v08f05l395v1hxllad35m5ld1jj51knb53c0396y248"; }; propagatedBuildInputs = [ pytz requests ]; diff --git a/pkgs/development/python-modules/atomman/default.nix b/pkgs/development/python-modules/atomman/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..ce4408b84412a40037b84c096de4a0d16e51f4ad --- /dev/null +++ b/pkgs/development/python-modules/atomman/default.nix @@ -0,0 +1,40 @@ +{ stdenv +, buildPythonPackage +, fetchPypi +, xmltodict +, datamodeldict +, numpy +, matplotlib +, scipy +, pandas +, cython +, numericalunits +, pytest +}: + +buildPythonPackage rec { + version = "1.2.3"; + pname = "atomman"; + + src = fetchPypi { + inherit pname version; + sha256 = "9eb6acc5497263cfa89be8d0f383a9a69f0726b4ac6798c1b1d96f26705ec09c"; + }; + + checkInputs = [ pytest ]; + propagatedBuildInputs = [ xmltodict datamodeldict numpy matplotlib scipy pandas cython numericalunits ]; + + # tests not included with Pypi release + doCheck = false; + + checkPhase = '' + py.test tests + ''; + + meta = with stdenv.lib; { + homepage = https://github.com/usnistgov/atomman/; + description = "Atomistic Manipulation Toolkit"; + license = licenses.mit; + maintainers = [ maintainers.costrouc ]; + }; +} diff --git a/pkgs/development/python-modules/authres/default.nix b/pkgs/development/python-modules/authres/default.nix index a0ec276f22d7d7a1ace74a5923ad3fabeb2706d4..8fe664f42310e29510e05180c4e1e09637ef4aea 100644 --- a/pkgs/development/python-modules/authres/default.nix +++ b/pkgs/development/python-modules/authres/default.nix @@ -2,11 +2,11 @@ buildPythonPackage rec { pname = "authres"; - version = "1.1.0"; + version = "1.1.1"; src = fetchPypi { inherit pname version; - sha256 = "1mcllhrwr23hwa2jn3m15k29ks1205ymwafjzchh8ma664hnzv6v"; + sha256 = "0bxclx021zn4hhrpaw5fl61bhnf17yqjd0pvwxqfqwdkxdjpx37b"; }; checkPhase = '' diff --git a/pkgs/development/python-modules/autologging/default.nix b/pkgs/development/python-modules/autologging/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..090eb68675bc430f8c5cf5e168075ba3a0b1883b --- /dev/null +++ b/pkgs/development/python-modules/autologging/default.nix @@ -0,0 +1,19 @@ +{ stdenv, buildPythonPackage, fetchPypi }: + +buildPythonPackage rec { + pname = "Autologging"; + version = "1.2.1"; + + src = fetchPypi { + inherit pname version; + sha256 = "16v2k16m433fxlvl7f0081n67rpxhs2hyn1ivkx1xs5qjxpv5n3k"; + extension = "zip"; + }; + + meta = with stdenv.lib; { + homepage = http://ninthtest.info/python-autologging/; + description = "Easier logging and tracing for Python classes"; + license = licenses.mit; + maintainers = with maintainers; [ twey ]; + }; +} diff --git a/pkgs/development/python-modules/beancount/default.nix b/pkgs/development/python-modules/beancount/default.nix index 1a005d9e42d730fe04595ec623288e1b3fd561e7..e023c721b0e66d6c0191e88beff2e1286f6f5f65 100644 --- a/pkgs/development/python-modules/beancount/default.nix +++ b/pkgs/development/python-modules/beancount/default.nix @@ -1,7 +1,7 @@ { stdenv, buildPythonPackage, fetchPypi, isPy3k , beautifulsoup4, bottle, chardet, dateutil , google_api_python_client, lxml, ply, python_magic -, nose, requests }: +, pytest, requests }: buildPythonPackage rec { version = "2.1.3"; @@ -14,13 +14,8 @@ buildPythonPackage rec { sha256 = "4b7b0d3633c82ca88d3cb3d31ad2fd2e45a42401cfa94eaa1cb938ffece34f22"; }; - checkInputs = [ nose ]; - - # Automatic tests cannot be run because it needs to import some local modules for tests. + # No tests in archive doCheck = false; - checkPhase = '' - nosetests - ''; propagatedBuildInputs = [ beautifulsoup4 @@ -32,6 +27,9 @@ buildPythonPackage rec { ply python_magic requests + # pytest really is a runtime dependency + # https://bitbucket.org/blais/beancount/commits/554e13057551951e113835196770847c788dd592 + pytest ]; meta = { diff --git a/pkgs/development/python-modules/broadlink/default.nix b/pkgs/development/python-modules/broadlink/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..d1ecddded77648af111a6fd5c4e6cfc18ea49520 --- /dev/null +++ b/pkgs/development/python-modules/broadlink/default.nix @@ -0,0 +1,28 @@ +{ lib, fetchPypi, buildPythonPackage +, pyaes, pycrc }: + +buildPythonPackage rec { + pname = "broadlink"; + version = "0.9"; + + src = fetchPypi { + inherit pname version; + sha256 = "10dnd859yjh1h6qrxhvkslbsj5fh5g654xsq2yqblkkv3xd711rs"; + }; + + postPatch = '' + substituteInPlace setup.py \ + --replace pyaes==1.6.0 pyaes + ''; + + propagatedBuildInputs = [ pyaes pycrc ]; + + # no tests available + doCheck = false; + + meta = with lib; { + description = "Python API for controlling Broadlink IR controllers"; + homepage = http://github.com/mjg59/python-broadlink; + license = licenses.mit; + }; +} diff --git a/pkgs/development/python-modules/brotli/default.nix b/pkgs/development/python-modules/brotli/default.nix index 5366eeb9c232d24f490a6df14b3ca13b2a250db5..35b40a3adf1ce5cd442de1d35dfc6bb95cd7efa8 100644 --- a/pkgs/development/python-modules/brotli/default.nix +++ b/pkgs/development/python-modules/brotli/default.nix @@ -2,14 +2,14 @@ buildPythonPackage rec { pname = "brotli"; - version = "1.0.5"; + version = "1.0.7"; # PyPI doesn't contain tests so let's use GitHub src = fetchFromGitHub { owner = "google"; repo = pname; rev = "v${version}"; - sha256 = "0ssj7mnhpdpk7qnwr49qfd4gxhkmvbli5mhs274pz55cx1xp7xja"; + sha256 = "1811b55wdfg4kbsjcgh1kc938g118jpvif97ilgrmbls25dfpvvw"; }; checkInputs = [ pytest ]; diff --git a/pkgs/development/python-modules/bsddb3/default.nix b/pkgs/development/python-modules/bsddb3/default.nix index 971aac70ad8e9a6f80dfc04fc51005e4133dea10..700f5b3d0c524a716dda0f7847ab5cec7388cafb 100644 --- a/pkgs/development/python-modules/bsddb3/default.nix +++ b/pkgs/development/python-modules/bsddb3/default.nix @@ -3,12 +3,12 @@ , fetchPypi , pkgs , isPy3k +, python }: buildPythonPackage rec { pname = "bsddb3"; version = "6.2.6"; - disabled = isPy3k; src = fetchPypi { inherit pname version; @@ -17,8 +17,9 @@ buildPythonPackage rec { buildInputs = [ pkgs.db ]; - # Judging from SyntaxError in test - doCheck = false; # test suite breaks python3 compatibility + checkPhase = '' + ${python.interpreter} test.py + ''; # Path to database need to be set. # Somehow the setup.py flag is not propagated. diff --git a/pkgs/development/python-modules/bt-proximity/default.nix b/pkgs/development/python-modules/bt-proximity/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..dfd4d8f0cbf10796edfa37a3975f78b69589809e --- /dev/null +++ b/pkgs/development/python-modules/bt-proximity/default.nix @@ -0,0 +1,27 @@ +{ stdenv, buildPythonPackage, fetchFromGitHub +, pybluez }: + +buildPythonPackage rec { + pname = "bt-proximity"; + version = "0.0.20180217"; + + # pypi only has a pre-compiled wheel and no sources + src = fetchFromGitHub { + owner = "FrederikBolding"; + repo = "bluetooth-proximity"; + rev = "463bade8a9080b47f09bf4a47830b31c69c5dffd"; + sha256 = "0anfh90cj3c2g7zqrjvq0d6dzpb4hjl6gk8zw0r349j2zw9i4h7y"; + }; + + propagatedBuildInputs = [ pybluez ]; + + # there are no tests + doCheck = false; + + meta = with stdenv.lib; { + description = "Bluetooth Proximity Detection using Python"; + homepage = https://github.com/FrederikBolding/bluetooth-proximity; + maintainers = with maintainers; [ peterhoeg ]; + license = licenses.asl20; + }; +} diff --git a/pkgs/development/python-modules/cassandra-driver/default.nix b/pkgs/development/python-modules/cassandra-driver/default.nix index 110cd1e0bd5ba18775939b4f40d48fa7c347d403..c445c21478b0f88d08918a85c162c3fa9e1b76ae 100644 --- a/pkgs/development/python-modules/cassandra-driver/default.nix +++ b/pkgs/development/python-modules/cassandra-driver/default.nix @@ -20,11 +20,11 @@ buildPythonPackage rec { pname = "cassandra-driver"; - version = "3.6.0"; + version = "3.15.1"; src = fetchPypi { inherit pname version; - sha256 = "1aqmy3psn12lxgp659d0zsxkirxzy5lnbnzxf9xjq1a93s3qm704"; + sha256 = "1xcirbvlj00id8269akhk8gy2sv0mlnbgy3nagi32648jwsrcadg"; }; buildInputs = [ pkgs.libev cython ]; diff --git a/pkgs/development/python-modules/cftime/default.nix b/pkgs/development/python-modules/cftime/default.nix index 9190f274a24fb683479f25d4063dfa797d075d7c..4c11267b041df9a6f975531dbc1f7e3f3bd84de1 100644 --- a/pkgs/development/python-modules/cftime/default.nix +++ b/pkgs/development/python-modules/cftime/default.nix @@ -9,11 +9,11 @@ buildPythonPackage rec { pname = "cftime"; - version = "1.0.1"; + version = "1.0.2.1"; src = fetchPypi { inherit pname version; - sha256 = "20556931f546838d09be5d589482dfae6164e0d403f0aab2163c006b680d3b92"; + sha256 = "1fxpvy3z0b3ga8ylr54ml7nxsfah2bh5azk43nb565rcka3x909c"; }; checkInputs = [ pytest coveralls pytestcov ]; diff --git a/pkgs/development/python-modules/click-completion/default.nix b/pkgs/development/python-modules/click-completion/default.nix index a6b36232531bfe19fd640208aefb5d4fca19f116..0dd5e22abf57191250299e2011a15c10c85d1c81 100644 --- a/pkgs/development/python-modules/click-completion/default.nix +++ b/pkgs/development/python-modules/click-completion/default.nix @@ -4,12 +4,12 @@ buildPythonPackage rec { pname = "click-completion"; - version = "0.4.1"; + version = "0.5.0"; disabled = (!isPy3k); src = fetchPypi { inherit pname version; - sha256 = "1fjm22dyma26jrx4ki2z4dwbhcah4r848fz381x64sz5xxq3xdrk"; + sha256 = "0k3chs301cnyq2jfl12lih5fa6r06nmxmbyp9dwvjm09v8f2c03n"; }; propagatedBuildInputs = [ click jinja2 shellingham six ]; diff --git a/pkgs/development/python-modules/click-repl/default.nix b/pkgs/development/python-modules/click-repl/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..8a487ab241022dcd37e49589729512a1c810e9c6 --- /dev/null +++ b/pkgs/development/python-modules/click-repl/default.nix @@ -0,0 +1,20 @@ +{ stdenv, buildPythonPackage, fetchPypi, click, prompt_toolkit }: + +buildPythonPackage rec { + pname = "click-repl"; + version = "0.1.6"; + + src = fetchPypi { + inherit pname version; + sha256 = "1mcmz95595nrp4r58spy1ac993db26hk4q97isghbmn4md99vwmr"; + }; + + propagatedBuildInputs = [ click prompt_toolkit ]; + + meta = with stdenv.lib; { + homepage = https://github.com/click-contrib/click-repl; + description = "Subcommand REPL for click apps"; + license = licenses.mit; + maintainers = with maintainers; [ twey ]; + }; +} diff --git a/pkgs/development/python-modules/coilmq/default.nix b/pkgs/development/python-modules/coilmq/default.nix index 11d39e411ce52b3d934832f511d4f36039617767..90eb1edc2cda95daadd531df02eed4d835665ed4 100644 --- a/pkgs/development/python-modules/coilmq/default.nix +++ b/pkgs/development/python-modules/coilmq/default.nix @@ -1,5 +1,5 @@ { stdenv, buildPythonPackage, fetchPypi -, stompclient, pythondaemon, redis, pid, pytest, six, click, coverage +, stompclient, python-daemon, redis, pid, pytest, six, click, coverage , sqlalchemy }: buildPythonPackage rec { @@ -11,7 +11,7 @@ buildPythonPackage rec { sha256 = "4cbfeb5ed2459df14902c1380157be6267702b1271682924cd316ccad8a29d1d"; }; - propagatedBuildInputs = [ stompclient pythondaemon redis pid ]; + propagatedBuildInputs = [ stompclient python-daemon redis pid ]; buildInputs = [ pytest six click coverage sqlalchemy ]; # The teste data is not included in the distribution diff --git a/pkgs/development/python-modules/datadog/default.nix b/pkgs/development/python-modules/datadog/default.nix index 47c206fda5e8bfddf4087c88668abfc196844028..7b15d412610a28e0d900cf141a83af5223a7d190 100644 --- a/pkgs/development/python-modules/datadog/default.nix +++ b/pkgs/development/python-modules/datadog/default.nix @@ -1,18 +1,14 @@ -{ lib, buildPythonPackage, fetchFromGitHub +{ lib, buildPythonPackage, fetchPypi , decorator, requests, simplejson , nose, mock }: buildPythonPackage rec { pname = "datadog"; - version = "0.20.0"; + version = "0.23.0"; - # no tests in PyPI tarball - # https://github.com/DataDog/datadogpy/pull/259 - src = fetchFromGitHub { - owner = "DataDog"; - repo = "datadogpy"; - rev = "v${version}"; - sha256 = "1p4p14853yrsl8py4ca7za7a12qzw0xwgz64f5kzx8a6vpv3p3md"; + src = fetchPypi { + inherit pname version; + sha256 = "6ed9aec2b3a26722b74465c2ed36d2efdb9c9fac1a07a84d81fa2fc0cfa66ae4"; }; propagatedBuildInputs = [ decorator requests simplejson ]; diff --git a/pkgs/development/python-modules/datamodeldict/default.nix b/pkgs/development/python-modules/datamodeldict/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..9aac803ccae19c8ce25470151d1231cfedf952cc --- /dev/null +++ b/pkgs/development/python-modules/datamodeldict/default.nix @@ -0,0 +1,27 @@ +{ stdenv +, buildPythonPackage +, fetchPypi +, xmltodict +}: + +buildPythonPackage rec { + version = "0.9.4"; + pname = "DataModelDict"; + + src = fetchPypi { + inherit pname version; + sha256 = "97d8e999e000cf69c48e57b1a72eb45a27d83576a38c6cd8550c230b018be7af"; + }; + + propagatedBuildInputs = [ xmltodict ]; + + # no tests + doCheck = false; + + meta = with stdenv.lib; { + homepage = https://github.com/usnistgov/DataModelDict/; + description = "Class allowing for data models equivalently represented as Python dictionaries, JSON, and XML"; + license = licenses.mit; + maintainers = [ maintainers.costrouc ]; + }; +} diff --git a/pkgs/development/python-modules/distributed/default.nix b/pkgs/development/python-modules/distributed/default.nix index 65d0b1ab77f1ff941fb5b136e8d02e6220406bd0..e1c61ac7c16f08ec06f9202ae77c062c090f6525 100644 --- a/pkgs/development/python-modules/distributed/default.nix +++ b/pkgs/development/python-modules/distributed/default.nix @@ -26,12 +26,12 @@ buildPythonPackage rec { pname = "distributed"; - version = "1.23.3"; + version = "1.24.0"; # get full repository need conftest.py to run tests src = fetchPypi { inherit pname version; - sha256 = "2d48a4de280fd7243ca76f9b12db5fe2486fc89dcdb510c77fa51f51733a04cc"; + sha256 = "1a1wynxzs9i2mdz50fs23r9223fmkpwwr0kprqjyb31ladkk07c4"; }; checkInputs = [ pytest pytest-repeat pytest-faulthandler pytest-timeout mock joblib ]; diff --git a/pkgs/development/python-modules/django/2_1.nix b/pkgs/development/python-modules/django/2_1.nix index f79a7c49ca9bf05004d496fe7b095fec09e88858..adda83ce715863d1980cb5240a51da0b8917a5c3 100644 --- a/pkgs/development/python-modules/django/2_1.nix +++ b/pkgs/development/python-modules/django/2_1.nix @@ -6,13 +6,13 @@ buildPythonPackage rec { pname = "Django"; - version = "2.1.2"; + version = "2.1.3"; disabled = !isPy3k; src = fetchPypi { inherit pname version; - sha256 = "0ibbs76pzy8zd47yviljrp1s66fmbf5b62fixayaznj7pdzavg7g"; + sha256 = "05k990b9zbj0nfkdcn13f5hg7ppfx9vffz5s0m66imd3mmlb5yhz"; }; patches = stdenv.lib.optionals withGdal [ diff --git a/pkgs/development/python-modules/dkimpy/default.nix b/pkgs/development/python-modules/dkimpy/default.nix index 7ce8877bbce01f81c166fa9cc6d9aab5cc943825..fbd94900212e95715b943e4c1d2225081f55782c 100644 --- a/pkgs/development/python-modules/dkimpy/default.nix +++ b/pkgs/development/python-modules/dkimpy/default.nix @@ -3,11 +3,11 @@ buildPythonPackage rec { pname = "dkimpy"; - version = "0.8.1"; + version = "0.9.0"; src = fetchPypi { inherit pname version; - sha256 = "125xakqg2j5jp4k5kafpnpazh9d97ysgayrsgpvm3nkdj4g8hw1j"; + sha256 = "1cfj2jsfqbwkrg9y5inz61wxf8z4rrs5js6dizjgsd4lyb3b5inj"; }; checkInputs = [ pytest ]; diff --git a/pkgs/development/python-modules/dpath/default.nix b/pkgs/development/python-modules/dpath/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..3b878f7d5e4c4875cb6d818e90239901875c14d4 --- /dev/null +++ b/pkgs/development/python-modules/dpath/default.nix @@ -0,0 +1,25 @@ +{ stdenv, fetchPypi, buildPythonPackage +, mock, nose +}: + +buildPythonPackage rec { + pname = "dpath"; + version = "1.4.2"; + + src = fetchPypi { + inherit pname version; + sha256 = "0gr7816pnzbyh9h1ia0qz0q1f9zfzacwb8dc36js8hw8x14myqqg"; + }; + + checkInputs = [ mock nose ]; + checkPhase = '' + nosetests + ''; + + meta = with stdenv.lib; { + homepage = https://github.com/akesterson/dpath-python; + license = [ licenses.mit ]; + description = "A python library for accessing and searching dictionaries via /slashed/paths ala xpath"; + maintainers = [ maintainers.mmlb ]; + }; +} diff --git a/pkgs/development/python-modules/dropbox/default.nix b/pkgs/development/python-modules/dropbox/default.nix index 5d344f180590ff1906f1a0b11961f002d2fa80f9..7693f7f056894d54b26fb5c83b9c9b04c42ed07c 100644 --- a/pkgs/development/python-modules/dropbox/default.nix +++ b/pkgs/development/python-modules/dropbox/default.nix @@ -3,11 +3,11 @@ buildPythonPackage rec { pname = "dropbox"; - version = "9.0.0"; + version = "9.1.0"; src = fetchPypi { inherit pname version; - sha256 = "385c62c2983c3804ba0064762f9e5f4753ea20a132c727b4961d3b68e1372ac8"; + sha256 = "0j6p5hgbglpwqd4jl53iqs83537464lybzc0aszi3w6wm6i0dlyq"; }; # Set DROPBOX_TOKEN environment variable to a valid token. diff --git a/pkgs/development/python-modules/exchangelib/default.nix b/pkgs/development/python-modules/exchangelib/default.nix index b4c2767f9dd66f364f86e1eeebaa5208653d7b10..64686d94813483d55df760f5a216a762d4252c98 100644 --- a/pkgs/development/python-modules/exchangelib/default.nix +++ b/pkgs/development/python-modules/exchangelib/default.nix @@ -6,14 +6,14 @@ buildPythonPackage rec { pname = "exchangelib"; - version = "1.11.4"; + version = "1.12.0"; # tests are not present in the PyPI version src = fetchFromGitHub { owner = "ecederstrand"; repo = pname; rev = "v${version}"; - sha256 = "1fpbnjnmqm62vll3m2ys1naikch70kqm26hz86f1cl0r2l2afbab"; + sha256 = "003c4flgsz6my64qm3mf9cb3wfxw0480aj9glf9wdz7xkwaq2l43"; }; # one test is failing due to it trying to send a request to example.com diff --git a/pkgs/development/python-modules/fastpbkdf2/default.nix b/pkgs/development/python-modules/fastpbkdf2/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..63a7565cf55adadc0ea6ee5214fa37e028293c83 --- /dev/null +++ b/pkgs/development/python-modules/fastpbkdf2/default.nix @@ -0,0 +1,26 @@ +{ stdenv, fetchFromGitHub, buildPythonPackage +, openssl, pytest, cffi, six }: + +buildPythonPackage rec { + pname = "fastpbkdf2"; + version = "0.2"; + + # Fetching from GitHub as tests are missing in PyPI + src = fetchFromGitHub { + owner = "Ayrx"; + repo = "python-fastpbkdf2"; + rev = "v${version}"; + sha256 = "1hvvlk3j28i6nswb6gy3mq7278nq0mgfnpxh1rv6jvi7xhd7qmlc"; + }; + + buildInputs = [ openssl ]; + checkInputs = [ pytest ]; + propagatedBuildInputs = [ cffi six ]; + + meta = with stdenv.lib; { + homepage = https://github.com/Ayrx/python-fastpbkdf2; + description = "Python bindings for fastpbkdf2"; + license = licenses.bsd3; + maintainers = with maintainers; [ jqueiroz ]; + }; +} diff --git a/pkgs/development/python-modules/filelock/default.nix b/pkgs/development/python-modules/filelock/default.nix index 80e3429b644af053f28252818c6084ecb27996f6..a548f1ab5d2e172b16aa2202a45204135d87dbe3 100644 --- a/pkgs/development/python-modules/filelock/default.nix +++ b/pkgs/development/python-modules/filelock/default.nix @@ -2,11 +2,11 @@ buildPythonPackage rec { pname = "filelock"; - version = "3.0.9"; + version = "3.0.10"; src = fetchPypi { inherit pname version; - sha256 = "97694f181bdf58f213cca0a7cb556dc7bf90e2f8eb9aa3151260adac56701afb"; + sha256 = "1rjv7g85smh6hrq6n9h721kh83qjv8mfp0ksdnbqbbsd82xw246n"; }; meta = with stdenv.lib; { diff --git a/pkgs/development/python-modules/fonttools/default.nix b/pkgs/development/python-modules/fonttools/default.nix index ed0b508a8acf6f684d55d7f119786bc15d15b6d0..0cab6fc18a5f6162c8bbc7df302242adb4c7aaa5 100644 --- a/pkgs/development/python-modules/fonttools/default.nix +++ b/pkgs/development/python-modules/fonttools/default.nix @@ -8,11 +8,11 @@ buildPythonPackage rec { pname = "fonttools"; - version = "3.29.1"; + version = "3.32.0"; src = fetchPypi { inherit pname version; - sha256 = "a687ca070daddb7ee25e3472b631acd0e53dbf11ecdf8e76248ee556472ede9d"; + sha256 = "16cg5v50x905c0dr34wqk70b0n3mqzp41iir2rd73f31d1z9jndq"; extension = "zip"; }; diff --git a/pkgs/development/python-modules/gin-config/default.nix b/pkgs/development/python-modules/gin-config/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..3a854646021f1253a199df859d24609433c848a0 --- /dev/null +++ b/pkgs/development/python-modules/gin-config/default.nix @@ -0,0 +1,29 @@ +{ lib +, buildPythonPackage +, fetchPypi +, six +, enum34 +}: + +buildPythonPackage rec { + pname = "gin-config"; + version = "0.1.1.2"; + + src = fetchPypi { + inherit pname version; + sha256 = "1zqzhg8nqdqjx0sjrsrs9bpyiaqqlyihqhhy2ijrpp62x9rjllga"; + + }; + + propagatedBuildInputs = [ six enum34 ]; + + # PyPI archive does not ship with tests + doCheck= false; + + meta = with lib; { + homepage = https://github.com/google/gin-config; + description = "Gin provides a lightweight configuration framework for Python, based on dependency injection."; + license = licenses.asl20; + maintainers = with maintainers; [ jethro ]; + }; +} diff --git a/pkgs/development/python-modules/google_cloud_speech/default.nix b/pkgs/development/python-modules/google_cloud_speech/default.nix index f404c68921d4c7a9ad9cfae822536f74a9d784f1..6a8aefa92c42087a8d42e7171e44f10298d9042e 100644 --- a/pkgs/development/python-modules/google_cloud_speech/default.nix +++ b/pkgs/development/python-modules/google_cloud_speech/default.nix @@ -3,11 +3,11 @@ buildPythonPackage rec { pname = "google-cloud-speech"; - version = "0.35.0"; + version = "0.36.0"; src = fetchPypi { inherit pname version; - sha256 = "5db2d69315b3d95d067c9bffe17994b6ee9252702888cc300d76252b451638e1"; + sha256 = "1jjicvf5r20ibhkkay0p6av8jifvp2wkdd8bs9vmhm4rwvcnlxbf"; }; propagatedBuildInputs = [ google_api_core ]; diff --git a/pkgs/development/python-modules/gphoto2/default.nix b/pkgs/development/python-modules/gphoto2/default.nix index 9757cb950dc19be1e5447a0c08c829ed5da50539..e49012d45025ff3aed7d5968a1979f85d08a4893 100644 --- a/pkgs/development/python-modules/gphoto2/default.nix +++ b/pkgs/development/python-modules/gphoto2/default.nix @@ -4,11 +4,11 @@ buildPythonPackage rec { pname = "gphoto2"; - version = "1.8.3"; + version = "1.8.5"; src = fetchPypi { inherit pname version; - sha256 = "0257f90f0d8342b8bc996ff1b45b2cd3219a29f8123aa21a6da159ee3566e49f"; + sha256 = "1jvwq7qjr2iazmwdzkmr82iza7snylpm6x0kr9p0z5mkicg1l38l"; }; nativeBuildInputs = [ pkgconfig ]; diff --git a/pkgs/development/python-modules/gplaycli/default.nix b/pkgs/development/python-modules/gplaycli/default.nix index 0a88269340892b1c50c57b2ffb48fe80a00e093b..0c7fa8db01c590d65782b588a08c625e9d82c08f 100644 --- a/pkgs/development/python-modules/gplaycli/default.nix +++ b/pkgs/development/python-modules/gplaycli/default.nix @@ -4,18 +4,18 @@ buildPythonPackage rec { pname = "gplaycli"; - version = "3.21"; + version = "3.25"; src = fetchFromGitHub { owner = "matlink"; repo = "gplaycli"; rev = version; - sha256 = "1r5nzi9yzswam0866gypjcvv3f1rw13jwx9s49chp8byxy1dyrs2"; + sha256 = "1rygx5cg4b1vwpkiaq6jcpbc1ly7cspslv3sy7x8n8ba61ryq6h4"; }; - disabled = !isPy3k; + disabled = !isPy3k; - propagatedBuildInputs = [ libffi pyasn1 clint ndg-httpsclient protobuf requests args gpapi pyaxmlparser ]; + propagatedBuildInputs = [ libffi pyasn1 clint ndg-httpsclient protobuf requests args gpapi pyaxmlparser ]; meta = with stdenv.lib; { homepage = https://github.com/matlink/gplaycli; diff --git a/pkgs/development/python-modules/homeassistant-pyozw/default.nix b/pkgs/development/python-modules/homeassistant-pyozw/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..c4410cfdbcf196e00c7ab00ba953e3958f6d7183 --- /dev/null +++ b/pkgs/development/python-modules/homeassistant-pyozw/default.nix @@ -0,0 +1,14 @@ +{ python_openzwave, fetchPypi }: + +python_openzwave.overridePythonAttrs (oldAttrs: rec { + pname = "homeassistant_pyozw"; + version = "0.1.0"; + + src = fetchPypi { + inherit pname version; + extension = "zip"; + sha256 = "bca4062906f65db9b4668388e6755d6ea3ee9e1b02ad3ed81738bb4d32a79342"; + }; + + meta.homepage = https://github.com/home-assistant/python-openzwave; +}) diff --git a/pkgs/development/python-modules/hoomd-blue/default.nix b/pkgs/development/python-modules/hoomd-blue/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..3463f471c5ebd7d83e8262ad1f7b5032ee3ad858 --- /dev/null +++ b/pkgs/development/python-modules/hoomd-blue/default.nix @@ -0,0 +1,67 @@ +{ stdenv, buildPythonPackage, fetchgit +, cmake, pkgconfig +, python +, mpi ? null +}: + +let components = { + cgcmm = true; + depreciated = true; + hpmc = true; + md = true; + metal = true; + testing = false; + }; + onOffBool = b: if b then "ON" else "OFF"; + withMPI = (mpi != null); +in +stdenv.mkDerivation rec { + version = "2.3.4"; + name = "hoomd-blue-${version}"; + + src = fetchgit { + url = "https://bitbucket.org/glotzer/hoomd-blue"; + rev = "v${version}"; + sha256 = "0in49f1dvah33nl5n2qqbssfynb31pw1ds07j8ziryk9w252j1al"; + }; + + passthru = { + inherit components mpi; + }; + + nativeBuildInputs = [ cmake pkgconfig ]; + buildInputs = stdenv.lib.optionals withMPI [ mpi ]; + propagatedBuildInputs = [ python.pkgs.numpy ] + ++ stdenv.lib.optionals withMPI [ python.pkgs.mpi4py ]; + + enableParallelBuilding = true; + + dontAddPrefix = true; + cmakeFlags = [ + "-DENABLE_MPI=${onOffBool withMPI}" + "-DBUILD_CGCMM=${onOffBool components.cgcmm}" + "-DBUILD_DEPRECIATED=${onOffBool components.depreciated}" + "-DBUILD_HPMC=${onOffBool components.hpmc}" + "-DBUILD_MD=${onOffBool components.md}" + "-DBUILD_METAL=${onOffBool components.metal}" + "-DBUILD_TESTING=${onOffBool components.testing}" + ]; + + preConfigure = '' + # Since we can't expand $out in `cmakeFlags` + cmakeFlags="$cmakeFlags -DCMAKE_INSTALL_PREFIX=$out/${python.sitePackages}" + ''; + + # tests fail but have tested that package runs properly + doCheck = false; + checkTarget = "test"; + + meta = with stdenv.lib; { + homepage = http://glotzerlab.engin.umich.edu/hoomd-blue/; + description = "HOOMD-blue is a general-purpose particle simulation toolkit"; + license = licenses.bsdOriginal; + platforms = [ "x86_64-linux" ]; + maintainers = [ maintainers.costrouc ]; + }; + +} diff --git a/pkgs/development/python-modules/hovercraft/default.nix b/pkgs/development/python-modules/hovercraft/default.nix deleted file mode 100644 index e598fd41bab1badd552217e06d7e44b04411d386..0000000000000000000000000000000000000000 --- a/pkgs/development/python-modules/hovercraft/default.nix +++ /dev/null @@ -1,36 +0,0 @@ -{ stdenv -, buildPythonPackage -, fetchPypi -, docutils -, lxml -, manuel -, pygments -, svg-path -, watchdog -, isPy3k -}: - -buildPythonPackage rec { - pname = "hovercraft"; - version = "2.0"; - disabled = ! isPy3k; - - src = fetchPypi { - inherit pname version; - sha256 = "0lqxr816lymgnywln8bbv9nrmkyahjjcjkm9kjyny9bflayz4f1g"; - }; - - propagatedBuildInputs = [ docutils lxml manuel pygments svg-path watchdog ]; - - # one test assumes we have docutils 0.12 - # TODO: enable tests after upgrading docutils to 0.12 - doCheck = false; - - meta = with stdenv.lib; { - description = "A tool to make impress.js presentations from reStructuredText"; - homepage = https://github.com/regebro/hovercraft; - license = licenses.mit; - maintainers = with maintainers; [ goibhniu ]; - }; - -} diff --git a/pkgs/development/python-modules/httmock/default.nix b/pkgs/development/python-modules/httmock/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..b50753c5586491ca07bddde9c35c2d3758d87b94 --- /dev/null +++ b/pkgs/development/python-modules/httmock/default.nix @@ -0,0 +1,22 @@ +{ stdenv, buildPythonPackage, fetchFromGitHub, requests }: + +buildPythonPackage rec { + pname = "httmock"; + version = "1.2.6"; + + src = fetchFromGitHub { + owner = "patrys"; + repo = "httmock"; + rev = version; + sha256 = "0iya8qsb2jm03s9p6sf1yzgm1irxl3dcq0k0a9ygl0skzjz5pvab"; + }; + + checkInputs = [ requests ]; + + meta = with stdenv.lib; { + description = "A mocking library for requests"; + homepage = https://github.com/patrys/httmock; + license = licenses.asl20; + maintainers = with maintainers; [ nyanloutre ]; + }; +} diff --git a/pkgs/development/python-modules/humanize/default.nix b/pkgs/development/python-modules/humanize/default.nix index 25c335c0016f771dc3efd5d75ba278775f3e4247..f1fac28dd93980d7e3d47cbf19d11d1960e16e75 100644 --- a/pkgs/development/python-modules/humanize/default.nix +++ b/pkgs/development/python-modules/humanize/default.nix @@ -22,7 +22,7 @@ buildPythonPackage rec { homepage = https://github.com/jmoiron/humanize; license = licenses.mit; maintainers = with maintainers; [ ]; - platforms = platforms.linux; # can only test on linux + platforms = platforms.unix; }; } diff --git a/pkgs/development/python-modules/imageio/default.nix b/pkgs/development/python-modules/imageio/default.nix index cdbcfee7180f9e2b1694f264701350f8514427f4..de8380280670bd735a38538809f1c345c0a93710 100644 --- a/pkgs/development/python-modules/imageio/default.nix +++ b/pkgs/development/python-modules/imageio/default.nix @@ -1,28 +1,42 @@ { stdenv , buildPythonPackage -, fetchurl +, fetchPypi +, pillow +, psutil , pytest , numpy +, isPy3k +, futures +, enum34 }: buildPythonPackage rec { pname = "imageio"; - version = "1.6"; + version = "2.4.1"; - src = fetchurl { - url = "https://github.com/imageio/imageio/archive/v${version}.tar.gz"; - sha256 = "195snkk3fsbjqd5g1cfsd9alzs5q45gdbi2ka9ph4yxqb31ijrbv"; + src = fetchPypi { + sha256 = "0jjiwf6wjipmykh33prjh448qv8mpgngfi77ndc7mym5r1xhgf0n"; + inherit pname version; }; - buildInputs = [ pytest ]; - propagatedBuildInputs = [ numpy ]; + checkInputs = [ pytest psutil ]; + propagatedBuildInputs = [ numpy pillow ] ++ stdenv.lib.optionals (!isPy3k) [ + futures + enum34 + ]; checkPhase = '' + export IMAGEIO_USERDIR="$TMP" + export IMAGEIO_NO_INTERNET="true" + export HOME="$(mktemp -d)" py.test ''; - # Tries to write in /var/tmp/.imageio - doCheck = false; + # For some reason, importing imageio also imports xml on Nix, see + # https://github.com/imageio/imageio/issues/395 + postPatch = '' + substituteInPlace tests/test_meta.py --replace '"urllib",' "\"urllib\",\"xml\"" + ''; meta = with stdenv.lib; { description = "Library for reading and writing a wide range of image, video, scientific, and volumetric data formats"; diff --git a/pkgs/development/python-modules/lark-parser/default.nix b/pkgs/development/python-modules/lark-parser/default.nix index a1b58a4eb05def589614934acacec99197c718a6..6858a6bcf949d810d917195e9377edfca8172c1a 100644 --- a/pkgs/development/python-modules/lark-parser/default.nix +++ b/pkgs/development/python-modules/lark-parser/default.nix @@ -5,14 +5,14 @@ }: buildPythonPackage rec { - pname = "lark-parser"; # PyPI name - version = "2017-12-18"; + pname = "lark-parser"; + version = "0.6.5"; src = fetchFromGitHub { - owner = "erezsh"; + owner = "lark-parser"; repo = "lark"; - rev = "9d6cde9b1ba971f02ea8106fa3b71a934e83d6fa"; - sha256 = "0nv6nxd8wx9dwhn37m94fkc10gknckrjs1hzajxygla3dpql455j"; + rev = version; + sha256 = "0mf10xm9blqik8mwrpw0r07vqlk2y4r98yqvk1sq849zqlxmqpsr"; }; checkPhase = '' @@ -23,7 +23,7 @@ buildPythonPackage rec { meta = { description = "A modern parsing library for Python, implementing Earley & LALR(1) and an easy interface"; - homepage = https://github.com/erezsh/lark; + homepage = https://github.com/lark-parser/lark; license = lib.licenses.mit; maintainers = with lib.maintainers; [ fridh ]; }; diff --git a/pkgs/development/python-modules/libagent/default.nix b/pkgs/development/python-modules/libagent/default.nix index f70d538bb8d093317ecde63d88700e3a17e2cd18..f939588604092a601ad959fc7602db1e229374b1 100644 --- a/pkgs/development/python-modules/libagent/default.nix +++ b/pkgs/development/python-modules/libagent/default.nix @@ -1,6 +1,6 @@ { stdenv, fetchPypi, buildPythonPackage, ed25519, ecdsa , semver, mnemonic, unidecode, mock, pytest , backports-shutil-which, ConfigArgParse, - pythondaemon, pymsgbox }: + python-daemon, pymsgbox }: buildPythonPackage rec { pname = "libagent"; @@ -12,7 +12,7 @@ buildPythonPackage rec { }; propagatedBuildInputs = [ unidecode backports-shutil-which ConfigArgParse - pythondaemon pymsgbox ecdsa ed25519 mnemonic semver ]; + python-daemon pymsgbox ecdsa ed25519 mnemonic semver ]; checkInputs = [ mock pytest ]; diff --git a/pkgs/development/python-modules/libversion/default.nix b/pkgs/development/python-modules/libversion/default.nix index 75e55944e987dd27b57202b261d062586a69af1b..82d8b8b9c5e28631a7ce11a402579c2a7f29559a 100644 --- a/pkgs/development/python-modules/libversion/default.nix +++ b/pkgs/development/python-modules/libversion/default.nix @@ -2,11 +2,11 @@ buildPythonPackage rec { pname = "libversion"; - version = "1.0.0"; + version = "1.1.2"; src = fetchPypi { inherit pname version; - sha256 = "18hhn7b7458lybs8z8ckh0idm7a2g4c4b5v2p9rr0lb618rchvds"; + sha256 = "040adjp5xjr4vwz3x2mspkymlcmljvqvacr88aw0jijq1h6fm59c"; }; nativeBuildInputs = [ pkgconfig ]; diff --git a/pkgs/development/python-modules/matplotlib/2.nix b/pkgs/development/python-modules/matplotlib/2.nix new file mode 100644 index 0000000000000000000000000000000000000000..f073e7baa4edeb228b72fc095eea206531ff2197 --- /dev/null +++ b/pkgs/development/python-modules/matplotlib/2.nix @@ -0,0 +1,91 @@ +{ stdenv, fetchPypi, python, buildPythonPackage, pycairo, backports_functools_lru_cache +, which, cycler, dateutil, nose, numpy, pyparsing, sphinx, tornado, kiwisolver +, freetype, libpng, pkgconfig, mock, pytz, pygobject3, functools32, subprocess32 +, enableGhostscript ? false, ghostscript ? null, gtk3 +, enableGtk2 ? false, pygtk ? null, gobjectIntrospection +, enableGtk3 ? false, cairo +, enableTk ? false, tcl ? null, tk ? null, tkinter ? null, libX11 ? null +, enableQt ? false, pyqt4 +, libcxx +, Cocoa +, pythonOlder +}: + +assert enableGhostscript -> ghostscript != null; +assert enableGtk2 -> pygtk != null; +assert enableTk -> (tcl != null) + && (tk != null) + && (tkinter != null) + && (libX11 != null) + ; +assert enableQt -> pyqt4 != null; + +buildPythonPackage rec { + version = "2.2.3"; + pname = "matplotlib"; + + src = fetchPypi { + inherit pname version; + sha256 = "7355bf757ecacd5f0ac9dd9523c8e1a1103faadf8d33c22664178e17533f8ce5"; + }; + + NIX_CFLAGS_COMPILE = stdenv.lib.optionalString stdenv.isDarwin "-I${libcxx}/include/c++/v1"; + + XDG_RUNTIME_DIR = "/tmp"; + + buildInputs = [ python which sphinx stdenv ] + ++ stdenv.lib.optional enableGhostscript ghostscript + ++ stdenv.lib.optional stdenv.isDarwin [ Cocoa ]; + + propagatedBuildInputs = + [ cycler dateutil nose numpy pyparsing tornado freetype kiwisolver + libpng pkgconfig mock pytz ] + ++ stdenv.lib.optional (pythonOlder "3.3") backports_functools_lru_cache + ++ stdenv.lib.optional enableGtk2 pygtk + ++ stdenv.lib.optionals enableGtk3 [ cairo pycairo gtk3 gobjectIntrospection pygobject3 ] + ++ stdenv.lib.optionals enableTk [ tcl tk tkinter libX11 ] + ++ stdenv.lib.optionals enableQt [ pyqt4 ] + ++ stdenv.lib.optionals (builtins.hasAttr "isPy2" python) [ functools32 subprocess32 ]; + + patches = + [ ./basedirlist.patch ] ++ + stdenv.lib.optionals stdenv.isDarwin [ ./darwin-stdenv-2.2.3.patch ]; + + # Matplotlib tries to find Tcl/Tk by opening a Tk window and asking the + # corresponding interpreter object for its library paths. This fails if + # `$DISPLAY` is not set. The fallback option assumes that Tcl/Tk are both + # installed under the same path which is not true in Nix. + # With the following patch we just hard-code these paths into the install + # script. + postPatch = + let + inherit (stdenv.lib.strings) substring; + tcl_tk_cache = ''"${tk}/lib", "${tcl}/lib", "${substring 0 3 tk.version}"''; + in + stdenv.lib.optionalString enableTk + "sed -i '/self.tcl_tk_cache = None/s|None|${tcl_tk_cache}|' setupext.py"; + + checkPhase = '' + ${python.interpreter} tests.py + ''; + + # Test data is not included in the distribution (the `tests` folder + # is missing) + doCheck = false; + + prePatch = '' + # Failing test: ERROR: matplotlib.tests.test_style.test_use_url + sed -i 's/test_use_url/fails/' lib/matplotlib/tests/test_style.py + # Failing test: ERROR: test suite for + sed -i 's/TestTinyPages/fails/' lib/matplotlib/sphinxext/tests/test_tinypages.py + # Transient errors + sed -i 's/test_invisible_Line_rendering/noop/' lib/matplotlib/tests/test_lines.py + ''; + + meta = with stdenv.lib; { + description = "Python plotting library, making publication quality plots"; + homepage = "https://matplotlib.org/"; + maintainers = with maintainers; [ lovek323 ]; + }; + +} diff --git a/pkgs/development/python-modules/matplotlib/darwin-stdenv-2.2.3.patch b/pkgs/development/python-modules/matplotlib/darwin-stdenv-2.2.3.patch new file mode 100644 index 0000000000000000000000000000000000000000..ca399b4e68412b3554328356713ac547db57d91e --- /dev/null +++ b/pkgs/development/python-modules/matplotlib/darwin-stdenv-2.2.3.patch @@ -0,0 +1,10 @@ +--- a/src/_macosx.m 2015-10-30 00:46:20.000000000 +0200 ++++ b/src/_macosx.m 2015-11-01 14:52:25.000000000 +0200 +@@ -6264,6 +6264,7 @@ + + static bool verify_framework(void) + { ++ return true; /* nixpkgs darwin stdenv */ + #ifdef COMPILING_FOR_10_6 + NSRunningApplication* app = [NSRunningApplication currentApplication]; + NSApplicationActivationPolicy activationPolicy = [app activationPolicy]; diff --git a/pkgs/development/python-modules/matplotlib/darwin-stdenv.patch b/pkgs/development/python-modules/matplotlib/darwin-stdenv.patch index ca399b4e68412b3554328356713ac547db57d91e..27ed8fc9f964b9dd1800f16b9c852f35a86264da 100644 --- a/pkgs/development/python-modules/matplotlib/darwin-stdenv.patch +++ b/pkgs/development/python-modules/matplotlib/darwin-stdenv.patch @@ -1,10 +1,12 @@ ---- a/src/_macosx.m 2015-10-30 00:46:20.000000000 +0200 -+++ b/src/_macosx.m 2015-11-01 14:52:25.000000000 +0200 -@@ -6264,6 +6264,7 @@ +diff -ruN matplotlib-3.0.0/src/_macosx.m matplotlib-3.0.0.patched/src/_macosx.m +--- matplotlib-3.0.0/src/_macosx.m 2018-09-16 00:35:21.000000000 +0200 ++++ matplotlib-3.0.0.patched/src/_macosx.m 2018-11-03 13:14:33.000000000 +0100 +@@ -2577,6 +2577,7 @@ static bool verify_framework(void) { + return true; /* nixpkgs darwin stdenv */ - #ifdef COMPILING_FOR_10_6 - NSRunningApplication* app = [NSRunningApplication currentApplication]; - NSApplicationActivationPolicy activationPolicy = [app activationPolicy]; + ProcessSerialNumber psn; + /* These methods are deprecated, but they don't require the app to + have started */ + diff --git a/pkgs/development/python-modules/matplotlib/default.nix b/pkgs/development/python-modules/matplotlib/default.nix index f9aa8cb2ebea72a9271b0e75c5b38345cb80efdd..2cd7557bac7ceb11629b9a9c049a94cebade7b4e 100644 --- a/pkgs/development/python-modules/matplotlib/default.nix +++ b/pkgs/development/python-modules/matplotlib/default.nix @@ -1,7 +1,7 @@ -{ stdenv, fetchPypi, python, buildPythonPackage, pycairo, backports_functools_lru_cache +{ stdenv, fetchPypi, python, buildPythonPackage, isPy3k, pycairo, backports_functools_lru_cache , which, cycler, dateutil, nose, numpy, pyparsing, sphinx, tornado, kiwisolver , freetype, libpng, pkgconfig, mock, pytz, pygobject3, functools32, subprocess32 -, enableGhostscript ? false, ghostscript ? null, gtk3 +, enableGhostscript ? true, ghostscript ? null, gtk3 , enableGtk2 ? false, pygtk ? null, gobjectIntrospection , enableGtk3 ? false, cairo , enableTk ? false, tcl ? null, tk ? null, tkinter ? null, libX11 ? null @@ -21,12 +21,14 @@ assert enableTk -> (tcl != null) assert enableQt -> pyqt4 != null; buildPythonPackage rec { - version = "2.2.3"; + version = "3.0.2"; pname = "matplotlib"; + disabled = !isPy3k; + src = fetchPypi { inherit pname version; - sha256 = "7355bf757ecacd5f0ac9dd9523c8e1a1103faadf8d33c22664178e17533f8ce5"; + sha256 = "c94b792af431f6adb6859eb218137acd9a35f4f7442cea57e4a59c54751c36af"; }; NIX_CFLAGS_COMPILE = stdenv.lib.optionalString stdenv.isDarwin "-I${libcxx}/include/c++/v1"; @@ -44,8 +46,7 @@ buildPythonPackage rec { ++ stdenv.lib.optional enableGtk2 pygtk ++ stdenv.lib.optionals enableGtk3 [ cairo pycairo gtk3 gobjectIntrospection pygobject3 ] ++ stdenv.lib.optionals enableTk [ tcl tk tkinter libX11 ] - ++ stdenv.lib.optionals enableQt [ pyqt4 ] - ++ stdenv.lib.optionals (builtins.hasAttr "isPy2" python) [ functools32 subprocess32 ]; + ++ stdenv.lib.optionals enableQt [ pyqt4 ]; patches = [ ./basedirlist.patch ] ++ @@ -84,9 +85,8 @@ buildPythonPackage rec { meta = with stdenv.lib; { description = "Python plotting library, making publication quality plots"; - homepage = "http://matplotlib.sourceforge.net/"; + homepage = "https://matplotlib.org/"; maintainers = with maintainers; [ lovek323 ]; - platforms = platforms.unix; }; } diff --git a/pkgs/development/python-modules/memory_profiler/default.nix b/pkgs/development/python-modules/memory_profiler/default.nix index 7587e5f33c95db7e7afd8b8d22335b43d70d261d..cf976f06ff08f22b3e6b45743dd7ed7be1991e95 100644 --- a/pkgs/development/python-modules/memory_profiler/default.nix +++ b/pkgs/development/python-modules/memory_profiler/default.nix @@ -1,32 +1,28 @@ { stdenv -, buildPythonPackage -, fetchPypi -, psutil , python }: -buildPythonPackage rec { +python.pkgs.buildPythonPackage rec { pname = "memory_profiler"; version = "0.54.0"; - src = fetchPypi { + src = python.pkgs.fetchPypi { inherit pname version; - sha256 = "d64342a23f32e105f4929b408a8b89d9222c3ce8afbbb3359817555811448d1a"; + sha256 = "06ld8h8mhm8pk0sv7fxgx0y2q8nri65qlh4vjbs0bq9j7yi44hyn"; }; - propagatedBuildInputs = [ psutil ]; - - checkPhase = '' - make test PYTHON=${python.interpreter} - ''; - - # Tests don't import profile - # doCheck = false; + propagatedBuildInputs = with python.pkgs; [ + psutil # needed to profile child processes + matplotlib # needed for plotting memory usage + ]; meta = with stdenv.lib; { - description = "A module for monitoring memory usage of a python program"; + description = "A module for monitoring memory usage of a process"; + longDescription = '' + This is a python module for monitoring memory consumption of a process as + well as line-by-line analysis of memory consumption for python programs. + ''; homepage = https://pypi.python.org/pypi/memory_profiler; license = licenses.bsd3; }; - } diff --git a/pkgs/development/python-modules/moviepy/default.nix b/pkgs/development/python-modules/moviepy/default.nix index 63613b516868292359c783431054c42df2750ee4..960fb604ec9b4d68a13d7f0e1567024cf1d70f78 100644 --- a/pkgs/development/python-modules/moviepy/default.nix +++ b/pkgs/development/python-modules/moviepy/default.nix @@ -4,16 +4,17 @@ , numpy , decorator , imageio +, isPy3k , tqdm }: buildPythonPackage rec { pname = "moviepy"; - version = "0.2.2.11"; + version = "0.2.3.5"; src = fetchPypi { inherit pname version; - sha256 = "d937d817e534efc54eaee2fc4c0e70b48fcd81e1528cd6425f22178704681dc3"; + sha256 = "1jrdpnzyk373zlh8lvjdabyvljz3sahshbdgbpk6w9vx5hfacvjk"; }; # No tests diff --git a/pkgs/development/python-modules/murmurhash/default.nix b/pkgs/development/python-modules/murmurhash/default.nix index a3a9096a335c66debabc26d6549e11e7c5edbcb1..b3cea69c098d87d8ee816b846f33c3e536930528 100644 --- a/pkgs/development/python-modules/murmurhash/default.nix +++ b/pkgs/development/python-modules/murmurhash/default.nix @@ -6,11 +6,11 @@ buildPythonPackage rec { pname = "murmurhash"; - version = "0.28.0"; + version = "1.0.1"; src = fetchPypi { inherit pname version; - sha256 = "16id8jppw8r54wisrlaaiprcszzb7d7lbpnskqn38s8i7vnkf4b5"; + sha256 = "02wbyjixvzd6l1mljpm1ci7x835zhk3nqxgy7kvbi4jimvairs9q"; }; buildInputs = [ diff --git a/pkgs/development/python-modules/mwclient/default.nix b/pkgs/development/python-modules/mwclient/default.nix index 3544bd631a54e336c1e7b89669c05d4927daaaf6..37785730252ce17d0d102370b440c2999975af69 100644 --- a/pkgs/development/python-modules/mwclient/default.nix +++ b/pkgs/development/python-modules/mwclient/default.nix @@ -2,7 +2,7 @@ , responses, mock, pytestcov, pytest, pytestcache, pytestpep8, coverage, six }: buildPythonPackage rec { - version = "0.9.1"; + version = "0.9.2"; pname = "mwclient"; name = "${pname}-${version}"; @@ -10,7 +10,7 @@ buildPythonPackage rec { owner = "mwclient"; repo = "mwclient"; rev = "v${version}"; - sha256 = "0l7l5j7znlyn2yqvdfxr4dq23wyp6d8z49pnkjqy2kan11nrjzym"; + sha256 = "0553pa5gm74k0lsrbcw5ic8jypnh5c3p58i50kzjvgcqz4frsafi"; }; buildInputs = [ mock responses pytestcov pytest pytestcache pytestpep8 coverage ]; diff --git a/pkgs/development/python-modules/nbxmpp/default.nix b/pkgs/development/python-modules/nbxmpp/default.nix index 696796740f8bc0d9558f70e9012fad3f677ee2b3..888e1de6aa57e04ebbb78c04460c090d5fe1ce24 100644 --- a/pkgs/development/python-modules/nbxmpp/default.nix +++ b/pkgs/development/python-modules/nbxmpp/default.nix @@ -2,7 +2,7 @@ let pname = "nbxmpp"; - version = "0.6.6"; + version = "0.6.8"; name = "${pname}-${version}"; in buildPythonPackage rec { inherit pname version; @@ -11,7 +11,7 @@ in buildPythonPackage rec { name = "${name}.tar.bz2"; url = "https://dev.gajim.org/gajim/python-nbxmpp/repository/archive.tar.bz2?" + "ref=${name}"; - sha256 = "10n7z613p00q15dplsvdrz11s9yq26jy2qack6nd8k7fivfhlcmz"; + sha256 = "09zrqz01j45kvayfscd66avkrnn237lbjg9li5hjhyw92h6hkkc4"; }; propagatedBuildInputs = [ pyopenssl ]; diff --git a/pkgs/development/python-modules/neovim/default.nix b/pkgs/development/python-modules/neovim/default.nix index 6d96732cbb07888b135da18a7e63538ccb78d6f7..20479093a4712a2feca661e6e30eb9bcf38ff0a9 100644 --- a/pkgs/development/python-modules/neovim/default.nix +++ b/pkgs/development/python-modules/neovim/default.nix @@ -11,11 +11,11 @@ buildPythonPackage rec { pname = "neovim"; - version = "0.2.6"; + version = "0.3.0"; src = fetchPypi { inherit pname version; - sha256 = "0xlj54w9bnmq4vidk6r08hwa6az7drahi08w1qf4j9q45rs8mrbc"; + sha256 = "18x7gi1idsch11hijvy0mm2mk4f42rapz9niax4rnak14x2klqq2"; }; checkInputs = [ nose ]; diff --git a/pkgs/development/python-modules/netcdf4/default.nix b/pkgs/development/python-modules/netcdf4/default.nix index 7e403fb9e563d7b5182b87819d0f1afa61154b37..f592edf2cd901dd19a14f61deb7a6fbfe034cf48 100644 --- a/pkgs/development/python-modules/netcdf4/default.nix +++ b/pkgs/development/python-modules/netcdf4/default.nix @@ -3,13 +3,13 @@ }: buildPythonPackage rec { pname = "netCDF4"; - version = "1.4.1"; + version = "1.4.2"; disabled = isPyPy; src = fetchPypi { inherit pname version; - sha256 = "d4fc65b98e348c39d082ab6b4b7f6d636b1b4e63bec016e5bca189fee5d46403"; + sha256 = "0c0sklgrmv15ygliin8qq0hp7vanmbi74m6zpi0r1ksr0hssyd5r"; }; checkInputs = [ pytest ]; diff --git a/pkgs/development/python-modules/networkx/default.nix b/pkgs/development/python-modules/networkx/default.nix index 3388aef9cef198f5784997c8eeb978211200bd91..85b53bd9df68b5b0b7e4f41b8576ec820789167c 100644 --- a/pkgs/development/python-modules/networkx/default.nix +++ b/pkgs/development/python-modules/networkx/default.nix @@ -7,12 +7,13 @@ buildPythonPackage rec { pname = "networkx"; - version = "2.1"; + # upgrade may break sage, please test the sage build or ping @timokau on upgrade + version = "2.2"; src = fetchPypi { inherit pname version; extension = "zip"; - sha256 = "64272ca418972b70a196cb15d9c85a5a6041f09a2f32e0d30c0255f25d458bb1"; + sha256 = "12swxb15299v9vqjsq4z8rgh5sdhvpx497xwnhpnb0gynrx6zra5"; }; checkInputs = [ nose ]; diff --git a/pkgs/development/python-modules/nibabel/default.nix b/pkgs/development/python-modules/nibabel/default.nix index 11770fa8461c0786c6a1a2e4386bfceb577e1686..7491865057b31e444fcf35b25f2909e2158a6e1c 100644 --- a/pkgs/development/python-modules/nibabel/default.nix +++ b/pkgs/development/python-modules/nibabel/default.nix @@ -8,11 +8,11 @@ buildPythonPackage rec { pname = "nibabel"; - version = "2.3.0"; + version = "2.3.1"; src = fetchPypi { inherit pname version; - sha256 = "bf34aeb0f7ca52dc528ae4f842607cea307b334163857ff1d64d43068f637ada"; + sha256 = "1xb6wgc67c0l7csjdd0k5r2p783rlahknrhqqa13qwgxbybadr53"; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/numericalunits/default.nix b/pkgs/development/python-modules/numericalunits/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..1212bf0039c9039c3eb07f0cc6e2a051ad313e50 --- /dev/null +++ b/pkgs/development/python-modules/numericalunits/default.nix @@ -0,0 +1,24 @@ +{ stdenv +, buildPythonPackage +, fetchPypi +}: + +buildPythonPackage rec { + version = "1.16"; + pname = "numericalunits"; + + src = fetchPypi { + inherit pname version; + sha256 = "71ae8e236c7a223bccefffb670dca68be476dd63b7b9009641fc64099455da25"; + }; + + # no tests + doCheck = false; + + meta = with stdenv.lib; { + homepage = http://pypi.python.org/pypi/numericalunits; + description = "A package that lets you define quantities with unit"; + license = licenses.mit; + maintainers = [ maintainers.costrouc ]; + }; +} diff --git a/pkgs/development/python-modules/ovito/default.nix b/pkgs/development/python-modules/ovito/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..cae337904b2085f7386b8a9ae265a31596815223 --- /dev/null +++ b/pkgs/development/python-modules/ovito/default.nix @@ -0,0 +1,33 @@ +{ stdenv, fetchgit +, cmake +, qtbase, libav, netcdf, qscintilla, zlib, boost, git, fftw, hdf5, libssh +, pythonPackages +}: + +stdenv.mkDerivation rec { + # compilation error in 2.9.0 https://gitlab.com/stuko/ovito/issues/40 + # This is not the "released" 3.0.0 just a commit + version = "3.0.0"; + name = "ovito-${version}"; + + src = fetchgit { + url = "https://gitlab.com/stuko/ovito"; + rev = "a28c28182a879d2a1b511ec56f9845306dd8a4db"; + sha256 = "1vqzv3gzwf8r0g05a7fj8hdyvnzq2h3wdfck7j6n1av6rvp7hi5r"; + }; + + buildInputs = [ cmake libav netcdf qscintilla zlib boost zlib git fftw hdf5 libssh ]; + propagatedBuildInputs = with pythonPackages; [ sphinx numpy sip pyqt5 matplotlib ase ]; + + enableParallelBuilding = true; + + meta = with stdenv.lib; { + description = "Scientific visualization and analysis software for atomistic simulation data"; + homepage = https://www.ovito.org; + license = licenses.gpl3; + maintainers = [ maintainers.costrouc ]; + # ensures not built on hydra + # https://github.com/NixOS/nixpkgs/pull/46846#issuecomment-436388048 + hydraPlatforms = [ ]; + }; +} diff --git a/pkgs/development/python-modules/owslib/default.nix b/pkgs/development/python-modules/owslib/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..7331511568fa9232c1d80ce9caf89c26e2eb99a2 --- /dev/null +++ b/pkgs/development/python-modules/owslib/default.nix @@ -0,0 +1,22 @@ +{ lib, buildPythonPackage, fetchPypi, dateutil, requests, pytz, pyproj , pytest } : +buildPythonPackage rec { + pname = "OWSLib"; + version = "0.17.0"; + + src = fetchPypi { + inherit pname version; + sha256 = "1px2nmbpbpp556kjq0ym0a7j24nbvs4w829727b2gr4a4ff86hxc"; + }; + + buildInputs = [ pytest ]; + propagatedBuildInputs = [ dateutil pyproj pytz requests ]; + + # 'tests' dir not included in pypy distribution archive. + doCheck = false; + + meta = with lib; { + description = "client for Open Geospatial Consortium web service interface standards"; + license = licenses.bsd3; + homepage = https://www.osgeo.org/projects/owslib/; + }; +} diff --git a/pkgs/development/python-modules/patsy/default.nix b/pkgs/development/python-modules/patsy/default.nix index 9efa3126ce3be12994c0d1165f352f501568988c..a21b4027bbb29c3eaa5c141677a7924d4d8e5e63 100644 --- a/pkgs/development/python-modules/patsy/default.nix +++ b/pkgs/development/python-modules/patsy/default.nix @@ -10,11 +10,11 @@ buildPythonPackage rec { pname = "patsy"; - version = "0.5.0"; + version = "0.5.1"; src = fetchPypi { inherit pname version; - sha256 = "0fw888zd2s7f5zxm9f98ss93qhwv0sqnbdy21ipj33ccqgakhpz0"; + sha256 = "149rbrdzwns0ay88caf1zsm1r53v1q5np1mrb36na50y432cw5gi"; }; checkInputs = [ nose parameterized ]; diff --git a/pkgs/development/python-modules/peppercorn/default.nix b/pkgs/development/python-modules/peppercorn/default.nix index 5a07fc217a9563a4ba0d55a7f718c80e1cc2367e..f62ff669c86528e6f616f4581573937453f4f5e9 100644 --- a/pkgs/development/python-modules/peppercorn/default.nix +++ b/pkgs/development/python-modules/peppercorn/default.nix @@ -5,11 +5,11 @@ buildPythonPackage rec { pname = "peppercorn"; - version = "0.5"; + version = "0.6"; src = fetchPypi { inherit pname version; - sha256 = "921cba5d51fa211e6da0fbd2120b9a98d663422a80f5bb669ad81ffb0909774b"; + sha256 = "1ip4bfwcpwkq9hz2dai14k2cyabvwrnvcvrcmzxmqm04g8fnimwn"; }; meta = with stdenv.lib; { diff --git a/pkgs/development/python-modules/plyplus/default.nix b/pkgs/development/python-modules/plyplus/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..2b18d114f3f6df3901ad7a679981096e1f79bab7 --- /dev/null +++ b/pkgs/development/python-modules/plyplus/default.nix @@ -0,0 +1,21 @@ +{ lib, fetchPypi, buildPythonPackage, ply, isPy3k }: +buildPythonPackage rec { + pname = "PlyPlus"; + version = "0.7.5"; + + src = fetchPypi { + inherit pname version; + sha256 = "0g3flgfm3jpb2d8v9z0qmbwca5gxdqr10cs3zvlfhv5cs06ahpnp"; + }; + + propagatedBuildInputs = [ ply ]; + + disabled = isPy3k; + + meta = { + homepage = https://github.com/erezsh/plyplus; + description = "A general-purpose parser built on top of PLY"; + maintainers = with lib.maintainers; [ twey ]; + license = lib.licenses.mit; + }; +} diff --git a/pkgs/development/python-modules/plyvel/default.nix b/pkgs/development/python-modules/plyvel/default.nix index 21561fab0351182190cf3f43952a62104c635248..bb0b56b1e9c05ad7521ef594a51720de2d6acd91 100644 --- a/pkgs/development/python-modules/plyvel/default.nix +++ b/pkgs/development/python-modules/plyvel/default.nix @@ -8,11 +8,11 @@ buildPythonPackage rec { pname = "plyvel"; - version = "0.9"; + version = "1.0.5"; src = fetchPypi { inherit pname version; - sha256 = "1scq75qyks9vmjd19bx57f2y60mkdr44ajvb12p3cjg439l96zaq"; + sha256 = "14cbdyq1s8xmvha3lj942gw478cd6jyhkw8n0mhxpgbz8px9jkfn"; }; buildInputs = [ pkgs.leveldb ] ++ stdenv.lib.optional isPy3k pytest; @@ -22,8 +22,8 @@ buildPythonPackage rec { meta = with stdenv.lib; { description = "Fast and feature-rich Python interface to LevelDB"; + platforms = platforms.linux; homepage = https://github.com/wbolster/plyvel; license = licenses.bsd3; }; - } diff --git a/pkgs/development/python-modules/priority/default.nix b/pkgs/development/python-modules/priority/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..90b58b665de8c0742e9f84736babff380c16733f --- /dev/null +++ b/pkgs/development/python-modules/priority/default.nix @@ -0,0 +1,23 @@ +{ lib, buildPythonPackage, fetchPypi, pytest, hypothesis }: + +buildPythonPackage rec { + pname = "priority"; + version = "1.3.0"; + + src = fetchPypi { + inherit pname version; + sha256 = "1gpzn9k9zgks0iw5wdmad9b4dry8haiz2sbp6gycpjkzdld9dhbb"; + }; + + checkInputs = [ pytest hypothesis ]; + checkPhase = '' + PYTHONPATH="src:$PYTHONPATH" pytest + ''; + + meta = with lib; { + homepage = https://python-hyper.org/priority/; + description = "A pure-Python implementation of the HTTP/2 priority tree"; + license = licenses.mit; + maintainers = [ maintainers.qyliss ]; + }; +} diff --git a/pkgs/development/python-modules/prompt_toolkit/1.nix b/pkgs/development/python-modules/prompt_toolkit/1.nix new file mode 100644 index 0000000000000000000000000000000000000000..e9d44c83f1db2eab10446185c239ee9494a6a869 --- /dev/null +++ b/pkgs/development/python-modules/prompt_toolkit/1.nix @@ -0,0 +1,38 @@ +{ lib +, buildPythonPackage +, fetchPypi +, pytest +, docopt +, six +, wcwidth +, pygments +}: + +buildPythonPackage rec { + pname = "prompt_toolkit"; + version = "1.0.15"; + + src = fetchPypi { + inherit pname version; + sha256 = "858588f1983ca497f1cf4ffde01d978a3ea02b01c8a26a8bbc5cd2e66d816917"; + }; + checkPhase = '' + rm prompt_toolkit/win32_types.py + py.test -k 'not test_pathcompleter_can_expanduser' + ''; + + checkInputs = [ pytest ]; + propagatedBuildInputs = [ docopt six wcwidth pygments ]; + + meta = { + description = "Python library for building powerful interactive command lines"; + longDescription = '' + prompt_toolkit could be a replacement for readline, but it can be + much more than that. It is cross-platform, everything that you build + with it should run fine on both Unix and Windows systems. Also ships + with a nice interactive Python shell (called ptpython) built on top. + ''; + homepage = https://github.com/jonathanslenders/python-prompt-toolkit; + license = lib.licenses.bsd3; + }; +} diff --git a/pkgs/development/python-modules/prompt_toolkit/default.nix b/pkgs/development/python-modules/prompt_toolkit/default.nix index 69a2f47d05ff143633f3881d0fae85224ec9d5dc..cd0df6c52be76af985c949556d58432151286138 100644 --- a/pkgs/development/python-modules/prompt_toolkit/default.nix +++ b/pkgs/development/python-modules/prompt_toolkit/default.nix @@ -2,27 +2,24 @@ , buildPythonPackage , fetchPypi , pytest -, docopt , six , wcwidth -, pygments }: buildPythonPackage rec { pname = "prompt_toolkit"; - version = "1.0.15"; + version = "2.0.7"; src = fetchPypi { inherit pname version; - sha256 = "858588f1983ca497f1cf4ffde01d978a3ea02b01c8a26a8bbc5cd2e66d816917"; + sha256 = "0fgacqk73w7s932vy46pan2yp8rvjmlkag20xvaydh9mhf6h85zx"; }; checkPhase = '' - rm prompt_toolkit/win32_types.py py.test -k 'not test_pathcompleter_can_expanduser' ''; checkInputs = [ pytest ]; - propagatedBuildInputs = [ docopt six wcwidth pygments ]; + propagatedBuildInputs = [ six wcwidth ]; meta = { description = "Python library for building powerful interactive command lines"; @@ -35,4 +32,4 @@ buildPythonPackage rec { homepage = https://github.com/jonathanslenders/python-prompt-toolkit; license = lib.licenses.bsd3; }; -} \ No newline at end of file +} diff --git a/pkgs/development/python-modules/ptpython/default.nix b/pkgs/development/python-modules/ptpython/default.nix index b553d50d130b0b60fed574a2f3ba73d2a14a7c1d..d48e42ef26468a869656d76a78a0b628d443aa0d 100644 --- a/pkgs/development/python-modules/ptpython/default.nix +++ b/pkgs/development/python-modules/ptpython/default.nix @@ -1,17 +1,15 @@ -{ stdenv, buildPythonPackage, fetchPypi, wcwidth, six, prompt_toolkit, docopt -, jedi, pygments }: +{ stdenv, buildPythonPackage, fetchPypi, prompt_toolkit, docopt , jedi, pygments }: buildPythonPackage rec { pname = "ptpython"; - version = "0.41"; - name = "${pname}-${version}"; + version = "2.0.4"; src = fetchPypi { inherit pname version; - sha256 = "1hcaaadkp5n37hxggraynifa33wx1akklzvf6y4rvgjxbjl2g2x7"; + sha256 = "1m34jbwj3j3762mg1vynpgciqw4kqdzdqjvd62mwhbjkly7ddsgb"; }; - propagatedBuildInputs = [ wcwidth six prompt_toolkit docopt jedi pygments ]; + propagatedBuildInputs = [ prompt_toolkit docopt jedi pygments ]; # no tests to run doCheck = false; diff --git a/pkgs/development/python-modules/py3status/default.nix b/pkgs/development/python-modules/py3status/default.nix index fd42faaad2138c738772415383e911511a0847d7..edd98020f06d6f3229030e703cb0b5032dc63794 100644 --- a/pkgs/development/python-modules/py3status/default.nix +++ b/pkgs/development/python-modules/py3status/default.nix @@ -19,17 +19,11 @@ buildPythonPackage rec { pname = "py3status"; - version = "3.12"; + version = "3.14"; src = fetchPypi { inherit pname version; - sha256 = "c9ef49f72c2d83976d2841ab7e70faee3c77f4d7dbb2d3390ef0f0509473ea9a"; - }; - - # ImportError: cannot import name '_to_ascii' - patches = fetchpatch { - url = "${meta.homepage}/commit/8a48e01cb68b514b532f56037e4f5a6c19662de5.patch"; - sha256 = "0v1yja5lvdjk6vh13lvh07n7aw5hjcy7v9lrs2dfb0y0cjw4kx9n"; + sha256 = "8775fb3903458a519593fc22b712ccac598464e319a12b9fdf04803fa60a1583"; }; doCheck = false; diff --git a/pkgs/development/python-modules/pyaxmlparser/default.nix b/pkgs/development/python-modules/pyaxmlparser/default.nix index 9f4f6627e2c81b4443a44be4567bba395c1530d3..9ea3a3eda0718779f1e74263cbdda37a85cec630 100644 --- a/pkgs/development/python-modules/pyaxmlparser/default.nix +++ b/pkgs/development/python-modules/pyaxmlparser/default.nix @@ -1,12 +1,12 @@ { buildPythonPackage, stdenv, lxml, click, fetchPypi }: buildPythonPackage rec { - version = "0.3.11"; + version = "0.3.13"; pname = "pyaxmlparser"; src = fetchPypi { inherit pname version; - sha256 = "dbe5ca9ddcf2f5041f6e5e3acc81d2940c696db89de4f840535a256e78f5e489"; + sha256 = "1mzdrifnaky57vkmdvg0rgjss55xkxaramci3wpv4h65lmk95988"; }; propagatedBuildInputs = [ lxml click ]; diff --git a/pkgs/development/python-modules/pyfiglet/default.nix b/pkgs/development/python-modules/pyfiglet/default.nix index ede8e965db94d15cbb98443b27928f9ab2b29025..f03bd26662159309d93e10f6e358ba934b4eaaeb 100644 --- a/pkgs/development/python-modules/pyfiglet/default.nix +++ b/pkgs/development/python-modules/pyfiglet/default.nix @@ -1,12 +1,12 @@ { stdenv, buildPythonPackage, fetchPypi }: buildPythonPackage rec { - version = "0.7.5"; + version = "0.7.6"; pname = "pyfiglet"; src = fetchPypi { inherit pname version; - sha256 = "04jy4182hn5xfs6jf432gxclfj1rhssd7bsf0b4gymrjzkhr8qa4"; + sha256 = "08npllxf85ccvhd27iyq2j1b813s1947q5b1x7vxv9hdni8rdmcp"; }; doCheck = false; diff --git a/pkgs/development/python-modules/pyfttt/default.nix b/pkgs/development/python-modules/pyfttt/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..44d6679e47c3c49f13ae901ce8e7e16be7d429d5 --- /dev/null +++ b/pkgs/development/python-modules/pyfttt/default.nix @@ -0,0 +1,24 @@ +{ stdenv, buildPythonPackage, fetchPypi +, requests }: + +buildPythonPackage rec { + pname = "pyfttt"; + version = "0.3.2"; + + src = fetchPypi { + inherit pname version; + sha256 = "10iq7c9c832ssl2xrvf62xf7znfvqzax6sq8ppsibq6wpb8dlnj5"; + }; + + propagatedBuildInputs = [ requests ]; + + # tests need a server to run against + doCheck = false; + + meta = with stdenv.lib; { + description = "Package for sending events to the IFTTT Webhooks Channel"; + homepage = https://github.com/briandconnelly/pyfttt; + maintainers = with maintainers; [ peterhoeg ]; + license = licenses.bsd2; + }; +} diff --git a/pkgs/development/python-modules/pyotp/default.nix b/pkgs/development/python-modules/pyotp/default.nix index 504d12d612e68427b2111912572eba0db0267787..05ba24eac396f24a4da544db79cd5ef0c71d46e2 100644 --- a/pkgs/development/python-modules/pyotp/default.nix +++ b/pkgs/development/python-modules/pyotp/default.nix @@ -2,11 +2,11 @@ buildPythonPackage rec { pname = "pyotp"; - version = "2.2.6"; + version = "2.2.7"; src = fetchPypi { inherit pname version; - sha256 = "dd9130dd91a0340d89a0f06f887dbd76dd07fb95a8886dc4bc401239f2eebd69"; + sha256 = "00p69nw431f0s2ilg0hnd77p1l22m06p9rq4f8zfapmavnmzw3xy"; }; meta = with lib; { diff --git a/pkgs/development/python-modules/pytest-datafiles/default.nix b/pkgs/development/python-modules/pytest-datafiles/default.nix index 70a6546189b37db8f12361037235a1a1d6e0edc0..1c323929a8e0ce601d4f7ee7c522747a6f4b0e59 100644 --- a/pkgs/development/python-modules/pytest-datafiles/default.nix +++ b/pkgs/development/python-modules/pytest-datafiles/default.nix @@ -2,10 +2,10 @@ buildPythonPackage rec { pname = "pytest-datafiles"; - version = "1.0"; + version = "2.0"; src = fetchPypi { inherit version pname; - sha256 = "1w5435b5pimk6479ml53lmld3qbag7awcg4gl3ljdywc1v096r5v"; + sha256 = "1yfvaqbqvjfikz215kwn6qiwwn9girka93zq4jphgfyvn75jjcql"; }; buildInputs = [ py pytest ]; diff --git a/pkgs/development/python-modules/pytest-repeat/default.nix b/pkgs/development/python-modules/pytest-repeat/default.nix index eca14c8289a951cdd61dff4d3f7c666bd702ccc5..1b30611eb9d6b673a019cb2e9d20c3852529246a 100644 --- a/pkgs/development/python-modules/pytest-repeat/default.nix +++ b/pkgs/development/python-modules/pytest-repeat/default.nix @@ -7,11 +7,11 @@ buildPythonPackage rec { pname = "pytest-repeat"; - version = "0.6.0"; + version = "0.7.0"; src = fetchPypi { inherit pname version; - sha256 = "84aba2fcca5dc2f32ae626a01708f469f17b3384ec3d1f507698077f274909d6"; + sha256 = "0axbrpqal3cqw9zq6dakdbg49pnf5gvyvq6yn93hp1ayc7fnhzk3"; }; buildInputs = [ setuptools_scm pytest ]; diff --git a/pkgs/development/python-modules/python-gitlab/default.nix b/pkgs/development/python-modules/python-gitlab/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..24ab69f1a0bc60c5c1e85cfff328acfcedb1e050 --- /dev/null +++ b/pkgs/development/python-modules/python-gitlab/default.nix @@ -0,0 +1,22 @@ +{ stdenv, buildPythonPackage, fetchPypi, requests, six, mock, httmock }: + +buildPythonPackage rec { + pname = "python-gitlab"; + version = "1.6.0"; + + src = fetchPypi { + inherit pname version; + sha256 = "20ceb9232f9a412ce6554056a6b5039013d0755261d57b5c8ada7035773de795"; + }; + + propagatedBuildInputs = [ requests six ]; + + checkInputs = [ mock httmock ]; + + meta = with stdenv.lib; { + description = "Interact with GitLab API"; + homepage = https://github.com/python-gitlab/python-gitlab; + license = licenses.lgpl3; + maintainers = with maintainers; [ nyanloutre ]; + }; +} diff --git a/pkgs/development/python-modules/python-stdnum/default.nix b/pkgs/development/python-modules/python-stdnum/default.nix index 381ecec996d1e184ad96632520c658423a291ed3..58219211324352a69ec295b350c1cc2fbf543c54 100644 --- a/pkgs/development/python-modules/python-stdnum/default.nix +++ b/pkgs/development/python-modules/python-stdnum/default.nix @@ -1,13 +1,13 @@ { lib, fetchPypi, buildPythonPackage, isPy3k }: buildPythonPackage rec { - version = "1.9"; + version = "1.10"; pname = "python-stdnum"; # Failing tests and dependency issue on Py3k disabled = isPy3k; src = fetchPypi { inherit pname version; - sha256 = "d587a520182f9d8aef7659cca429f4382881589c8883a0a55322b2f94970bdb3"; + sha256 = "0prs63q8zdgwr5cxc5a43zvsm66l0gf9jk19qdf85m6isnp5186a"; }; meta = { homepage = https://arthurdejong.org/python-stdnum/; diff --git a/pkgs/development/python-modules/pytorch/default.nix b/pkgs/development/python-modules/pytorch/default.nix index 7d56f1990a525a7d56a7ed0a930c8345052bdb11..b0ae9ef0cf55cbd785ba6713882ab106af5aa49d 100644 --- a/pkgs/development/python-modules/pytorch/default.nix +++ b/pkgs/development/python-modules/pytorch/default.nix @@ -72,7 +72,7 @@ in buildPythonPackage rec { ] ++ lib.optional (pythonOlder "3.5") typing; checkPhase = '' - ${cudaStubEnv}python test/run_test.py --exclude dataloader sparse torch utils + ${cudaStubEnv}python test/run_test.py --exclude dataloader sparse torch utils distributed ''; meta = { diff --git a/pkgs/development/python-modules/pyzmq/default.nix b/pkgs/development/python-modules/pyzmq/default.nix index 31b08d0a9e0b76fda9fe5d6e463d5c3c1d8739f3..71243ef6f76e3cca9a02c88dca07ec8b7260c85c 100644 --- a/pkgs/development/python-modules/pyzmq/default.nix +++ b/pkgs/development/python-modules/pyzmq/default.nix @@ -2,7 +2,7 @@ , fetchPypi , pytest , tornado -, zeromq3 +, zeromq , py , python }: @@ -17,7 +17,7 @@ buildPythonPackage rec { }; checkInputs = [ pytest tornado ]; - buildInputs = [ zeromq3]; + buildInputs = [ zeromq ]; propagatedBuildInputs = [ py ]; # test_socket.py seems to be hanging diff --git a/pkgs/development/python-modules/qtconsole/default.nix b/pkgs/development/python-modules/qtconsole/default.nix index 67b9a07a36dbfabf032701bba30eb89db62919c4..8c0be1f0a540f858c06b5c5b498e0d004bca1ae9 100644 --- a/pkgs/development/python-modules/qtconsole/default.nix +++ b/pkgs/development/python-modules/qtconsole/default.nix @@ -14,11 +14,11 @@ buildPythonPackage rec { pname = "qtconsole"; - version = "4.4.1"; + version = "4.4.2"; src = fetchPypi { inherit pname version; - sha256 = "7870b19e6a6b0ab3acc09ee65463c0ca7568b3a01a6902d7c4e1ed2c4fc4e176"; + sha256 = "1yihnxya9kll24fp4a929mria930i9r20kx43sjjwh92gcb2k9gs"; }; buildInputs = [ nose ] ++ lib.optionals isPy27 [mock]; diff --git a/pkgs/development/python-modules/ruamel_yaml/default.nix b/pkgs/development/python-modules/ruamel_yaml/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..59674d82c90c734a5bcba02b98023d32c26635e0 --- /dev/null +++ b/pkgs/development/python-modules/ruamel_yaml/default.nix @@ -0,0 +1,31 @@ +{ stdenv +, buildPythonPackage +, fetchPypi +, ruamel_base +, typing +, ruamel_ordereddict +, isPy3k +}: + +buildPythonPackage rec { + pname = "ruamel.yaml"; + version = "0.15.35"; + + src = fetchPypi { + inherit pname version; + sha256 = "0xggyfaj6vprggahf7cq8kp9j79rb7hn8ndk3bxj2sxvwhhliiwd"; + }; + + # Tests cannot load the module to test + doCheck = false; + + propagatedBuildInputs = [ ruamel_base typing ] + ++ stdenv.lib.optional (!isPy3k) ruamel_ordereddict; + + meta = with stdenv.lib; { + description = "YAML parser/emitter that supports roundtrip preservation of comments, seq/map flow style, and map key order"; + homepage = https://bitbucket.org/ruamel/yaml; + license = licenses.mit; + }; + +} diff --git a/pkgs/development/python-modules/salmon-mail/default.nix b/pkgs/development/python-modules/salmon-mail/default.nix index b278d26b5dda022b3799713be74ecbd9de713e81..9486899c6061bebe9b7f681a660c229ffca832c6 100644 --- a/pkgs/development/python-modules/salmon-mail/default.nix +++ b/pkgs/development/python-modules/salmon-mail/default.nix @@ -1,5 +1,5 @@ { stdenv, buildPythonPackage, fetchPypi, nose, dnspython -, chardet, lmtpd, pythondaemon, six, jinja2, mock }: +, chardet, lmtpd, python-daemon, six, jinja2, mock }: buildPythonPackage rec { pname = "salmon-mail"; @@ -11,7 +11,7 @@ buildPythonPackage rec { }; checkInputs = [ nose jinja2 mock ]; - propagatedBuildInputs = [ chardet dnspython lmtpd pythondaemon six ]; + propagatedBuildInputs = [ chardet dnspython lmtpd python-daemon six ]; # The tests use salmon executable installed by salmon itself so we need to add # that to PATH diff --git a/pkgs/development/python-modules/scikitlearn/default.nix b/pkgs/development/python-modules/scikitlearn/default.nix index 4e22110bf3d41a9edd186e071e156081893ccb5b..c6cd2efcc2feabb7a3112b1860d4489aed8887a6 100644 --- a/pkgs/development/python-modules/scikitlearn/default.nix +++ b/pkgs/development/python-modules/scikitlearn/default.nix @@ -1,34 +1,32 @@ { stdenv, buildPythonPackage, fetchPypi, python -, nose, pillow , gfortran, glibcLocales -, numpy, scipy +, numpy, scipy, pytest, pillow }: buildPythonPackage rec { pname = "scikit-learn"; - version = "0.19.2"; + version = "0.20.0"; # UnboundLocalError: local variable 'message' referenced before assignment - doCheck = false; disabled = stdenv.isi686; # https://github.com/scikit-learn/scikit-learn/issues/5534 src = fetchPypi { inherit pname version; - sha256 = "b276739a5f863ccacb61999a3067d0895ee291c95502929b2ae56ea1f882e888"; + sha256 = "064cbxsis6m7l6pr09ijjwqdv0c0yrfnazabwq8p09gcz1qxklcp"; }; - buildInputs = [ nose pillow gfortran glibcLocales ]; + buildInputs = [ pillow gfortran glibcLocales ]; propagatedBuildInputs = [ numpy scipy numpy.blas ]; + checkInputs = [ pytest ]; LC_ALL="en_US.UTF-8"; - # Disable doctests on OSX: https://github.com/scikit-learn/scikit-learn/issues/10213 - # Disable doctests everywhere: https://github.com/NixOS/nixpkgs/issues/35436 + doCheck = !stdenv.isAarch64; + # Skip test_feature_importance_regression - does web fetch checkPhase = '' - HOME=$TMPDIR OMP_NUM_THREADS=1 nosetests --doctest-options=+SKIP $out/${python.sitePackages}/sklearn/ + cd $TMPDIR + HOME=$TMPDIR OMP_NUM_THREADS=1 pytest -k "not test_feature_importance_regression" --pyargs sklearn ''; - - meta = with stdenv.lib; { description = "A set of python modules for machine learning and data mining"; homepage = http://scikit-learn.org; diff --git a/pkgs/tools/graphics/scour/default.nix b/pkgs/development/python-modules/scour/default.nix similarity index 73% rename from pkgs/tools/graphics/scour/default.nix rename to pkgs/development/python-modules/scour/default.nix index 11932aabe0bbd001b1b280d8cadada9260a569a7..7c198519331b89ce57f3c7b3a1fee7fdc21866c5 100644 --- a/pkgs/tools/graphics/scour/default.nix +++ b/pkgs/development/python-modules/scour/default.nix @@ -1,8 +1,6 @@ -{ stdenv, python3 }: +{ lib, buildPythonPackage, fetchPypi, six }: -with python3.pkgs; - -buildPythonApplication rec { +buildPythonPackage rec { pname = "scour"; version = "0.37"; @@ -13,11 +11,13 @@ buildPythonApplication rec { propagatedBuildInputs = [ six ]; - meta = with stdenv.lib; { + # No tests included in archive + doCheck = false; + + meta = with lib; { description = "An SVG Optimizer / Cleaner "; homepage = https://github.com/scour-project/scour; license = licenses.asl20; maintainers = with maintainers; [ worldofpeace ]; - platforms = platforms.unix; }; } diff --git a/pkgs/development/python-modules/selenium/default.nix b/pkgs/development/python-modules/selenium/default.nix index b64b53fb2fbb88eeecf39c3d6eee51817e267d3a..ada159aaa121c9fc06904794df32e7049838a5d7 100644 --- a/pkgs/development/python-modules/selenium/default.nix +++ b/pkgs/development/python-modules/selenium/default.nix @@ -23,11 +23,11 @@ in buildPythonPackage rec { pname = "selenium"; - version = "3.14.1"; + version = "3.141.0"; src = fetchPypi { inherit pname version; - sha256 = "ab192cd046164c40fabcf44b47c66c8b12495142f4a69dcc55ea6eeef096e614"; + sha256 = "039hf9knvl4s3hp21bzwsp1g5ri9gxsh504dp48lc6nr1av35byy"; }; buildInputs = [xorg.libX11]; diff --git a/pkgs/development/python-modules/snapcast/default.nix b/pkgs/development/python-modules/snapcast/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..bb13754179118eff31db7a2cae02258e534bd19d --- /dev/null +++ b/pkgs/development/python-modules/snapcast/default.nix @@ -0,0 +1,28 @@ +{ stdenv, buildPythonPackage, fetchPypi, isPy3k, pytest +, construct }: + +buildPythonPackage rec { + pname = "snapcast"; + version = "2.0.9"; + + disabled = !isPy3k; + + src = fetchPypi { + inherit pname version; + sha256 = "0hlfcg0qdfavjzhxz4v2spjkj6440a1254wrncfkfkyff6rv9x3s"; + }; + + checkInputs = [ pytest ]; + + propagatedBuildInputs = [ construct ]; + + # no checks from Pypi - https://github.com/happyleavesaoc/python-snapcast/issues/23 + doCheck = false; + + meta = with stdenv.lib; { + description = "Control Snapcast, a multi-room synchronous audio solution"; + homepage = https://github.com/happyleavesaoc/python-snapcast/; + license = licenses.mit; + maintainers = with maintainers; [ peterhoeg ]; + }; +} diff --git a/pkgs/development/python-modules/splinter/default.nix b/pkgs/development/python-modules/splinter/default.nix index 91a94a6e841951660f12d647e3caf1b1c2dc4612..5a2ee5877c9265886b67c7351e72d7b6d065c71c 100644 --- a/pkgs/development/python-modules/splinter/default.nix +++ b/pkgs/development/python-modules/splinter/default.nix @@ -8,11 +8,11 @@ buildPythonPackage rec { pname = "splinter"; - version = "0.8.0"; + version = "0.9.0"; src = fetchPypi { inherit pname version; - sha256 = "463e98135a85ff98f6c0084cb34cea1fe07827444958d224c087a84093a65281"; + sha256 = "0il187zajpiw4p011nkb4bcjxxd85f131bcqz31201ff14ifvih8"; }; propagatedBuildInputs = [ selenium ]; diff --git a/pkgs/development/python-modules/sslib/default.nix b/pkgs/development/python-modules/sslib/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..3e5be211d42bbff3b9609683a54ab5f9e389b9ec --- /dev/null +++ b/pkgs/development/python-modules/sslib/default.nix @@ -0,0 +1,22 @@ +{ stdenv, fetchPypi, buildPythonPackage, isPy3k }: + +buildPythonPackage rec { + pname = "sslib"; + version = "0.2.0"; + disabled = !isPy3k; + + src = fetchPypi { + inherit pname version; + sha256 = "0b5zrjkvx4klmv57pzhcmvbkdlyn745mn02k7hp811hvjrhbz417"; + }; + + # No tests available + doCheck = false; + + meta = with stdenv.lib; { + homepage = https://github.com/jqueiroz/python-sslib; + description = "A Python3 library for sharing secrets"; + license = licenses.mit; + maintainers = with maintainers; [ jqueiroz ]; + }; +} diff --git a/pkgs/development/python-modules/stevedore/default.nix b/pkgs/development/python-modules/stevedore/default.nix index 6d088d52d7e7cf66ab21893df132cb78e340637c..8027688c9ea5033b772828297d225feaa4357431 100644 --- a/pkgs/development/python-modules/stevedore/default.nix +++ b/pkgs/development/python-modules/stevedore/default.nix @@ -2,11 +2,11 @@ buildPythonPackage rec { pname = "stevedore"; - version = "1.29.0"; + version = "1.30.0"; src = fetchPypi { inherit pname version; - sha256 = "1e153545aca7a6a49d8337acca4f41c212fbfa60bf864ecd056df0cafb9627e8"; + sha256 = "0161pwgv6514ks6lky8642phlcqks5w8j5sacdnbfgx5s6nwfaxr"; }; doCheck = false; diff --git a/pkgs/development/python-modules/sympy/default.nix b/pkgs/development/python-modules/sympy/default.nix index fb702e046a48aad66198e56285e8d96f2173ac07..1bf7511d2bb9c3139cdcdab6af1eff0bb8539ce5 100644 --- a/pkgs/development/python-modules/sympy/default.nix +++ b/pkgs/development/python-modules/sympy/default.nix @@ -8,11 +8,11 @@ buildPythonPackage rec { pname = "sympy"; - version = "1.2"; # Upgrades may break sage. Please test. + version = "1.3"; # Upgrades may break sage. Please test or ping @timokau. src = fetchPypi { inherit pname version; - sha256 = "0pr2v7dl51ngch1cfs423qsb472l9ys1m8m7vrhhh99fsxqa0v18"; + sha256 = "0m0vhyv15zszn19mk5xq3py4iijjbr7f3fpy1s57b8q7c9arncg1"; }; checkInputs = [ glibcLocales ]; diff --git a/pkgs/development/python-modules/texttable/default.nix b/pkgs/development/python-modules/texttable/default.nix index fed9a3fd733078c28e6d5c3189ea7c28cb6b3671..6747ae78f49cb6784438695d4b34b9ad379bab02 100644 --- a/pkgs/development/python-modules/texttable/default.nix +++ b/pkgs/development/python-modules/texttable/default.nix @@ -5,11 +5,11 @@ buildPythonPackage rec { pname = "texttable"; - version = "1.4.0"; + version = "1.5.0"; src = fetchPypi { inherit pname version; - sha256 = "95e8cfe85f8395a7eacdfbc8f09d885b9ef3a6ac6ead0364ea721de1127aa36b"; + sha256 = "0mzv6zs8ciwnf83fwikqmmjwbzqmdja3imn4b4k209f80g0rk8qv"; }; meta = { diff --git a/pkgs/development/python-modules/toml/default.nix b/pkgs/development/python-modules/toml/default.nix index 9e408f2cb1693c3c16afd4fa3cdfc4892488969c..29d0a4c692f3d23eb1e2755e27d9f853e9d3c908 100644 --- a/pkgs/development/python-modules/toml/default.nix +++ b/pkgs/development/python-modules/toml/default.nix @@ -2,11 +2,11 @@ buildPythonPackage rec { pname = "toml"; - version = "0.9.6"; + version = "0.10.0"; src = fetchPypi { inherit pname version; - sha256 = "380178cde50a6a79f9d2cf6f42a62a5174febe5eea4126fe4038785f1d888d42"; + sha256 = "0p1xww2mzkhqvxkfvmfzm58bbfj812zhdz4rwdjiv94ifz2q37r2"; }; # This package has a test script (built for Travis) that involves a) diff --git a/pkgs/development/python-modules/trueskill/default.nix b/pkgs/development/python-modules/trueskill/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..2106e4d2e76c01bade62348b35b8d5401c2a268f --- /dev/null +++ b/pkgs/development/python-modules/trueskill/default.nix @@ -0,0 +1,28 @@ +{ stdenv, buildPythonPackage, fetchPypi +, six }: + +buildPythonPackage rec { + pname = "trueskill"; + version = "0.4.5"; + + src = fetchPypi { + inherit pname version; + sha256 = "1fv7g1szyjykja9mzax2w4js7jm2z7wwzgnr5dqrsdi84j6v8qlx"; + }; + + propagatedBuildInputs = [ + six + ]; + + # Can't build distribute, see https://github.com/NixOS/nixpkgs/pull/49340 + doCheck = false; + + meta = with stdenv.lib; { + description = "The video game rating system"; + homepage = https://trueskill.org; + license = licenses.bsd3; + maintainers = with maintainers; [ + eadwu + ]; + }; +} diff --git a/pkgs/development/python-modules/uncertainties/default.nix b/pkgs/development/python-modules/uncertainties/default.nix index 38c46bd11fa8f795355c7f0d79985fd1ddfe5d6a..2d7fdaa7eca51e9411e92b088bad91ac041e1bfa 100644 --- a/pkgs/development/python-modules/uncertainties/default.nix +++ b/pkgs/development/python-modules/uncertainties/default.nix @@ -2,11 +2,11 @@ buildPythonPackage rec { pname = "uncertainties"; - version = "3.0.2"; + version = "3.0.3"; src = fetchPypi { inherit pname version; - sha256 = "91db922d54dff6094b4ea0d6e058f713a992cdf42e3ebaf73278e1893bfa2942"; + sha256 = "1hp00k10d5n69s446flss8b4rd02wq8dscvakv7ylfyf2p8y564s"; }; buildInputs = [ nose numpy ]; diff --git a/pkgs/development/python-modules/uncompyle6/default.nix b/pkgs/development/python-modules/uncompyle6/default.nix index f0428f176034876b6cfc048bc78b445e2d5ac6bc..ed177be1c1958a4f455ed210bbe5733a7c0c326a 100644 --- a/pkgs/development/python-modules/uncompyle6/default.nix +++ b/pkgs/development/python-modules/uncompyle6/default.nix @@ -11,11 +11,11 @@ buildPythonPackage rec { pname = "uncompyle6"; - version = "3.2.3"; + version = "3.2.4"; src = fetchPypi { inherit pname version; - sha256 = "bd882f3c979b49d28ba7accc5ce7380ced8cab12e782e9170769ca15f0b81f8a"; + sha256 = "0lv0ks7w5bsl8bndm6ikl4yprkq2ps23y409ldlycrvlggjg44y5"; }; checkInputs = [ nose pytest hypothesis six ]; diff --git a/pkgs/development/python-modules/uproot-methods/default.nix b/pkgs/development/python-modules/uproot-methods/default.nix index b3c2ce714ce4afa3fcc3d0ef5d17eeb24a78e3c7..3c859ea2d3059468c70a7db7f7ab185bfcbc30a9 100644 --- a/pkgs/development/python-modules/uproot-methods/default.nix +++ b/pkgs/development/python-modules/uproot-methods/default.nix @@ -6,12 +6,12 @@ }: buildPythonPackage rec { - version = "0.2.5"; + version = "0.2.6"; pname = "uproot-methods"; src = fetchPypi { inherit pname version; - sha256 = "7d5563b3335af414a12caf5b350c952fdc7576abb17630382de5564a7c254ae6"; + sha256 = "1z8gganf8p68z586zzx440dpkar3djdbc4f7670bkriyix0z6lxn"; }; propagatedBuildInputs = [ numpy awkward ]; diff --git a/pkgs/development/python-modules/websockets/default.nix b/pkgs/development/python-modules/websockets/default.nix index 0628b3c869a8f5efac43a1d47cbf76dd28023e07..2e0caae4b46970814d6f6d3e42c6fb668b35da8e 100644 --- a/pkgs/development/python-modules/websockets/default.nix +++ b/pkgs/development/python-modules/websockets/default.nix @@ -6,11 +6,11 @@ buildPythonPackage rec { pname = "websockets"; - version = "6.0"; + version = "7.0"; src = fetchPypi { inherit pname version; - sha256 = "8f3b956d11c5b301206382726210dc1d3bee1a9ccf7aadf895aaf31f71c3716c"; + sha256 = "17vwr6sa1y3lb24wzfyyc98c5v03di4j8f24qkqa9vsvaghc7qq8"; }; disabled = pythonOlder "3.3"; diff --git a/pkgs/development/python-modules/zstd/default.nix b/pkgs/development/python-modules/zstd/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..53c3c8969abf03f3a09c4a18441e6154e1db948f --- /dev/null +++ b/pkgs/development/python-modules/zstd/default.nix @@ -0,0 +1,49 @@ +{ stdenv, pkgconfig, fetchpatch, fetchFromGitHub, buildPythonPackage +, zstd, pytest }: + +buildPythonPackage rec { + pname = "zstd"; + version = "1.3.5.1"; + + # Switch back to fetchPypi when tests/ is included, see https://github.com/NixOS/nixpkgs/pull/49339 + src = fetchFromGitHub { + owner = "sergey-dryabzhinsky"; + repo = "python-zstd"; + rev = "v${version}"; + sha256 = "08n1vz4zavas4cgzpdfcbpy33lnv39xxhq5mgj0zv3xi03ypc1rl"; + }; + + postPatch = '' + substituteInPlace setup.py \ + --replace "/usr/bin/pkg-config" "${pkgconfig}/bin/pkg-config" + ''; + + nativeBuildInputs = [ pkgconfig ]; + buildInputs = [ zstd ]; + + setupPyBuildFlags = [ + "--external" + "--include-dirs=${zstd}/include" + "--libraries=zstd" + "--library-dirs=${zstd}/lib" + ]; + + # Running tests via setup.py triggers an attempt to recompile with the vendored zstd + ZSTD_EXTERNAL = 1; + VERSION = zstd.version; + PKG_VERSION = version; + + checkInputs = [ pytest ]; + checkPhase = '' + pytest + ''; + + meta = with stdenv.lib; { + description = "Simple python bindings to Yann Collet ZSTD compression library"; + homepage = https://github.com/sergey-dryabzhinsky/python-zstd; + license = licenses.bsd2; + maintainers = with maintainers; [ + eadwu + ]; + }; +} diff --git a/pkgs/development/r-modules/bioc-annotation-packages.nix b/pkgs/development/r-modules/bioc-annotation-packages.nix index 54c4968607dff2ac001428cc0d55d8197e652d33..863d7c9fcfe04d3418ef9eb11621950a336ed168 100644 --- a/pkgs/development/r-modules/bioc-annotation-packages.nix +++ b/pkgs/development/r-modules/bioc-annotation-packages.nix @@ -7,11 +7,12 @@ let derive2 = derive { biocVersion = "3.8"; }; in with self; { AHCytoBands = derive2 { name="AHCytoBands"; version="0.99.0"; sha256="0g92nz33rx14zl5can7s701bipdgz7rxqygvvc22c4a0qj52ijnq"; depends=[]; }; - AHEnsDbs = derive2 { name="AHEnsDbs"; version="1.0.6"; sha256="1sdxj2rxhc2cj2rgfif2flnic57zkdrhdvhr3y64amcmrp57xgj4"; depends=[AnnotationHubData ensembldb]; }; + AHEnsDbs = derive2 { name="AHEnsDbs"; version="1.0.8"; sha256="1v1177l4y0l546mzp8ybhvhnjwrsck5bkic8w6n6n2xq07d6aahz"; depends=[AnnotationHubData ensembldb]; }; BSgenome_Alyrata_JGI_v1 = derive2 { name="BSgenome.Alyrata.JGI.v1"; version="1.0.0"; sha256="06549kkzy36n378zb61lrf9zardncp7i20r73rmmiq1pnfjp3gww"; depends=[BSgenome]; }; BSgenome_Amellifera_BeeBase_assembly4 = derive2 { name="BSgenome.Amellifera.BeeBase.assembly4"; version="1.4.0"; sha256="02zs16q441zcbfp7xvv1gny5nn02ivfr8md1wh5s5rpnj6sdl6kj"; depends=[BSgenome]; }; BSgenome_Amellifera_UCSC_apiMel2 = derive2 { name="BSgenome.Amellifera.UCSC.apiMel2"; version="1.4.0"; sha256="1967w7aly7qydykk7rar712kvgsav3zjr4kirybkj17nwiynd74g"; depends=[BSgenome]; }; BSgenome_Amellifera_UCSC_apiMel2_masked = derive2 { name="BSgenome.Amellifera.UCSC.apiMel2.masked"; version="1.3.99"; sha256="128jmpnpbz1afqvhvdc9vrc8gmlyg26ca7qz362qsx89jrm4khpr"; depends=[BSgenome BSgenome_Amellifera_UCSC_apiMel2]; }; + BSgenome_Aofficinalis_NCBI_V1 = derive2 { name="BSgenome.Aofficinalis.NCBI.V1"; version="1.0.0"; sha256="0n6m5jnpiz6bv46b7s396qkxha2d8271j747j50v2zb6a7wd0rjr"; depends=[BSgenome]; }; BSgenome_Athaliana_TAIR_04232008 = derive2 { name="BSgenome.Athaliana.TAIR.04232008"; version="1.3.1000"; sha256="0dsbjfh2yf0v3zmbypn9p3alvwhfw2qyr5vivyj7x9ablylb6qxc"; depends=[BSgenome]; }; BSgenome_Athaliana_TAIR_TAIR9 = derive2 { name="BSgenome.Athaliana.TAIR.TAIR9"; version="1.3.1000"; sha256="0n45sn80c5nchfj1wzbcaicfyg66id2zhr5xm3w238idkbj05l00"; depends=[BSgenome]; }; BSgenome_Btaurus_UCSC_bosTau3 = derive2 { name="BSgenome.Btaurus.UCSC.bosTau3"; version="1.4.0"; sha256="0vh3664q7pynfw763pwg2h74h0ncmi5nslvj7y5bj1q7pvf03zpc"; depends=[BSgenome]; }; @@ -21,6 +22,7 @@ in with self; { BSgenome_Btaurus_UCSC_bosTau6 = derive2 { name="BSgenome.Btaurus.UCSC.bosTau6"; version="1.4.0"; sha256="0waaf9wfmdl5jbi3la64vsiqb83lyw9fqg3sn90bf1q7k3k617p3"; depends=[BSgenome]; }; BSgenome_Btaurus_UCSC_bosTau6_masked = derive2 { name="BSgenome.Btaurus.UCSC.bosTau6.masked"; version="1.3.99"; sha256="07isv0lcvlsl0aha1p474l0pps0j7bsh455m33vfxwahivqsfy27"; depends=[BSgenome BSgenome_Btaurus_UCSC_bosTau6]; }; BSgenome_Btaurus_UCSC_bosTau8 = derive2 { name="BSgenome.Btaurus.UCSC.bosTau8"; version="1.4.2"; sha256="16wjy1aw9nvx03r7w8yh5w7sw3pn8i9nczd0n0728l6nnyqxlsz6"; depends=[BSgenome]; }; + BSgenome_Carietinum_NCBI_v1 = derive2 { name="BSgenome.Carietinum.NCBI.v1"; version="1.0.0"; sha256="1asyyb1p1bzc7dv9s2igjxrf9f144vvz2xbv9qxg15w9qzzx7r33"; depends=[BSgenome]; }; BSgenome_Celegans_UCSC_ce10 = derive2 { name="BSgenome.Celegans.UCSC.ce10"; version="1.4.0"; sha256="1zaym97jk4npxk14ifvwz2rvhm4zx9xgs33r9vvx9rlynp0gydrk"; depends=[BSgenome]; }; BSgenome_Celegans_UCSC_ce11 = derive2 { name="BSgenome.Celegans.UCSC.ce11"; version="1.4.2"; sha256="0d4bxfglpqiv1f0n6imdgz101g9383hfj3ra91268wryzlm0yk5w"; depends=[BSgenome]; }; BSgenome_Celegans_UCSC_ce2 = derive2 { name="BSgenome.Celegans.UCSC.ce2"; version="1.4.0"; sha256="1x7nvisz7mjrpqlsiw4an04f8hksygzn96p5ld0388hljg78dax8"; depends=[BSgenome]; }; @@ -78,6 +80,7 @@ in with self; { BSgenome_Ptroglodytes_UCSC_panTro3 = derive2 { name="BSgenome.Ptroglodytes.UCSC.panTro3"; version="1.4.0"; sha256="1vbfx0zrj4rcwcsm1q09xdiv0mmrycj8223lnxqb8nr5r017f7gm"; depends=[BSgenome]; }; BSgenome_Ptroglodytes_UCSC_panTro3_masked = derive2 { name="BSgenome.Ptroglodytes.UCSC.panTro3.masked"; version="1.3.99"; sha256="18ga0whdcp5zpigrmh68wjmn99lzvfyvgxjm58y0jx66rmg94mir"; depends=[BSgenome BSgenome_Ptroglodytes_UCSC_panTro3]; }; BSgenome_Ptroglodytes_UCSC_panTro5 = derive2 { name="BSgenome.Ptroglodytes.UCSC.panTro5"; version="1.4.2"; sha256="0wxciajcyf0hr6g6zcji125jm18nnspwvnv5x3jibjvxzx55gcds"; depends=[BSgenome]; }; + BSgenome_Ptroglodytes_UCSC_panTro6 = derive2 { name="BSgenome.Ptroglodytes.UCSC.panTro6"; version="1.4.2"; sha256="1l1fqnw1iqb2a7kvyvb0m1vdvq6cxs6py92yvbaf4zwklmgmdq0b"; depends=[BSgenome]; }; BSgenome_Rnorvegicus_UCSC_rn4 = derive2 { name="BSgenome.Rnorvegicus.UCSC.rn4"; version="1.4.0"; sha256="1aww2bxyqbb81iln3vgrb0659r82v9yv1z41k9r3zws8b7k7df6x"; depends=[BSgenome]; }; BSgenome_Rnorvegicus_UCSC_rn4_masked = derive2 { name="BSgenome.Rnorvegicus.UCSC.rn4.masked"; version="1.3.99"; sha256="0jfv1873ab1nwwdr18vrjqcdl4rhv3xgqbf4jfnjk7sjx154pfi6"; depends=[BSgenome BSgenome_Rnorvegicus_UCSC_rn4]; }; BSgenome_Rnorvegicus_UCSC_rn5 = derive2 { name="BSgenome.Rnorvegicus.UCSC.rn5"; version="1.4.0"; sha256="1s92983m73bi08ihvyd8c17yx29hz5xxrnrs2if8fda4asw1f3f0"; depends=[BSgenome]; }; @@ -105,6 +108,7 @@ in with self; { EnsDb_Mmusculus_v79 = derive2 { name="EnsDb.Mmusculus.v79"; version="2.99.0"; sha256="1zpmq7v55if6q9r0h883q9k8l70ym20b01m9hxf121wb256rl9f7"; depends=[ensembldb]; }; EnsDb_Rnorvegicus_v75 = derive2 { name="EnsDb.Rnorvegicus.v75"; version="2.99.0"; sha256="02sx9l1p67ihkn0dfzbi08cpp8x4k2mjdqn7hvzfiaibsbqp70bb"; depends=[ensembldb]; }; EnsDb_Rnorvegicus_v79 = derive2 { name="EnsDb.Rnorvegicus.v79"; version="2.99.0"; sha256="1ki2hrn0a55f3ipxny0hpgl5ld9pjkhcwmvvqwwd99f3sqbxf3br"; depends=[ensembldb]; }; + EuPathDB = derive2 { name="EuPathDB"; version="1.0.0"; sha256="08yl7zx5j6ywnrdcrrsvfkkxnvhrhrcddxw0g5sv90gy55zgv86n"; depends=[AnnotationHub AnnotationHubData Biobase BiocManager Biostrings GenomeInfoDbData GenomicRanges]; }; FDb_FANTOM4_promoters_hg19 = derive2 { name="FDb.FANTOM4.promoters.hg19"; version="1.0.0"; sha256="04sn5x1r5fcbghzw6n1bvy0z8zyhrbk86wsqz1p5gk665vicz8rw"; depends=[AnnotationDbi Biostrings GenomicFeatures]; }; FDb_InfiniumMethylation_hg18 = derive2 { name="FDb.InfiniumMethylation.hg18"; version="2.2.0"; sha256="0vwzqzj49imjdsn8ssiwqi7qic7rqw5pbsiinyxgy7y10fn2i42a"; depends=[AnnotationDbi Biostrings GenomicFeatures org_Hs_eg_db TxDb_Hsapiens_UCSC_hg18_knownGene]; }; FDb_InfiniumMethylation_hg19 = derive2 { name="FDb.InfiniumMethylation.hg19"; version="2.2.0"; sha256="0gq90fvph6kgrpjb89nvzq6hl1k24swn19rgjh5g98l86mja6nk0"; depends=[AnnotationDbi Biostrings GenomicFeatures org_Hs_eg_db TxDb_Hsapiens_UCSC_hg19_knownGene]; }; @@ -112,8 +116,8 @@ in with self; { FDb_UCSC_snp137common_hg19 = derive2 { name="FDb.UCSC.snp137common.hg19"; version="1.0.0"; sha256="1q1r7rk29q0zlzxz6fvfy1kjfli6wxzvhvhhfnf3z4ksy5332q63"; depends=[AnnotationDbi GenomicFeatures]; }; FDb_UCSC_tRNAs = derive2 { name="FDb.UCSC.tRNAs"; version="1.0.1"; sha256="1dymdalx9fzrplxyc0fd9faa4r5jimi7zyry9k65lyz1pabpkwqz"; depends=[AnnotationDbi GenomicFeatures]; }; GGHumanMethCancerPanelv1_db = derive2 { name="GGHumanMethCancerPanelv1.db"; version="1.4.1"; sha256="0ag1pkbh4mx4aplfrrz1q4f4cl05mczq9pcsfkd1071qk51dcwvx"; depends=[AnnotationDbi AnnotationForge org_Hs_eg_db]; }; - GO_db = derive2 { name="GO.db"; version="3.6.0"; sha256="0fi2qywr9apg5lwfqfq9qq6bgrnv4rdhxx25656qn4bsy62i838j"; depends=[AnnotationDbi]; }; - GenomeInfoDbData = derive2 { name="GenomeInfoDbData"; version="1.1.0"; sha256="0k1hsjx6n2i1sf14hyrgdhxqxm5mxk0bgnivhiax944whcicmzbf"; depends=[]; }; + GO_db = derive2 { name="GO.db"; version="3.7.0"; sha256="0i3wcf5h3n0dawzc1hy0kv74f06j80c47n4p3g3fmrcxlhi3jpa5"; depends=[AnnotationDbi]; }; + GenomeInfoDbData = derive2 { name="GenomeInfoDbData"; version="1.2.0"; sha256="0di6nlqpsyqf693k2na65ayqldih563x3zfrczpqc5q2hl5kg35c"; depends=[]; }; Homo_sapiens = derive2 { name="Homo.sapiens"; version="1.3.1"; sha256="151vj7h5p1c8yd5swrchk46z469p135wk50hvkl0nhgndvy0jj01"; depends=[AnnotationDbi GenomicFeatures GO_db org_Hs_eg_db OrganismDbi TxDb_Hsapiens_UCSC_hg19_knownGene]; }; Hs6UG171_db = derive2 { name="Hs6UG171.db"; version="3.2.3"; sha256="034aady3hy8j9bm7pbl8l8h0gcfnzmpyxg9l9s1ky0pj7ryzr93a"; depends=[AnnotationDbi org_Hs_eg_db]; }; HsAgilentDesign026652_db = derive2 { name="HsAgilentDesign026652.db"; version="3.2.3"; sha256="0x6nxvzmc8k4qp382ca32y58awkxpg0b3kc7m1mz9iag6sq7c5vx"; depends=[AnnotationDbi org_Hs_eg_db]; }; @@ -136,6 +140,18 @@ in with self; { JazaeriMetaData_db = derive2 { name="JazaeriMetaData.db"; version="3.2.3"; sha256="04lvcmm4ybxkfwgbiwcnpyj6kpbd0gd7jz6ijlbbvv6zdgdmvykb"; depends=[AnnotationDbi org_Hs_eg_db]; }; KEGG_db = derive2 { name="KEGG.db"; version="3.2.3"; sha256="0qv9in1nmnqcbjxh0y45x33xyw9zdp4jf5hmlvcsh1pclcq4dsh2"; depends=[AnnotationDbi]; }; LAPOINTE_db = derive2 { name="LAPOINTE.db"; version="3.2.3"; sha256="0960gy5p4ybs5zs6251cgc3nk5a9gsh1nh23gkbkr3gc8jddinfm"; depends=[AnnotationDbi org_Hs_eg_db]; }; + LRBase_Ath_eg_db = derive2 { name="LRBase.Ath.eg.db"; version="0.99.1"; sha256="0v7zyp6mngdfrqgx0fb6lj0ara7q4ch2dahnwqjk5y9psmvi8m16"; depends=[LRBaseDbi RSQLite]; }; + LRBase_Bta_eg_db = derive2 { name="LRBase.Bta.eg.db"; version="0.99.1"; sha256="14yl5d4vmm2hjrlxsflwvkw18j0kcz364b3mc3fnxzbk8phisy3l"; depends=[LRBaseDbi RSQLite]; }; + LRBase_Cel_eg_db = derive2 { name="LRBase.Cel.eg.db"; version="0.99.1"; sha256="18w8ay874qjs4qgb3g1j77k2fspvvvbyy3p85wgzy1yl839ngy3b"; depends=[LRBaseDbi RSQLite]; }; + LRBase_Dme_eg_db = derive2 { name="LRBase.Dme.eg.db"; version="0.99.1"; sha256="0qbc5942g57mjdlhqpnapwq58bmi5xbc0mrqbqkfbxpx881ka2v6"; depends=[LRBaseDbi RSQLite]; }; + LRBase_Dre_eg_db = derive2 { name="LRBase.Dre.eg.db"; version="0.99.1"; sha256="0wpx9dg2nhw20f3vvmaqy5yip8xwg1niswspxs4jv9krd0z6h5d8"; depends=[LRBaseDbi RSQLite]; }; + LRBase_Gga_eg_db = derive2 { name="LRBase.Gga.eg.db"; version="0.99.1"; sha256="0nycj3h69ca2gxxmc08zvf0jv5zylfayhd6sgzrmqz0zsr0n5fxk"; depends=[LRBaseDbi RSQLite]; }; + LRBase_Hsa_eg_db = derive2 { name="LRBase.Hsa.eg.db"; version="0.99.1"; sha256="0g690d63sp5pb0i28zvi80y41n6b31mzza46invjvq9c1j2rijzd"; depends=[LRBaseDbi RSQLite]; }; + LRBase_Mmu_eg_db = derive2 { name="LRBase.Mmu.eg.db"; version="0.99.1"; sha256="0kmd69a31hw8i2p8qg64m074ypa102cfa7qpyz2m7nr6gwb3ik3z"; depends=[LRBaseDbi RSQLite]; }; + LRBase_Pab_eg_db = derive2 { name="LRBase.Pab.eg.db"; version="0.99.1"; sha256="0scycwpdmr6yvfyqsani1372pmyqxzvv30wsvy8hx3km7dcd4ypz"; depends=[LRBaseDbi RSQLite]; }; + LRBase_Rno_eg_db = derive2 { name="LRBase.Rno.eg.db"; version="0.99.1"; sha256="1b5rzb9kpnak90fb55y380qmspd8gah3wxvsliv1lddab65m5ch3"; depends=[LRBaseDbi RSQLite]; }; + LRBase_Ssc_eg_db = derive2 { name="LRBase.Ssc.eg.db"; version="0.99.1"; sha256="1p1crrh3wkinvhqmy9b1h4j9yfvwbsykhm6b0xlhn0kzdqxlizjf"; depends=[LRBaseDbi RSQLite]; }; + LRBase_Xtr_eg_db = derive2 { name="LRBase.Xtr.eg.db"; version="0.99.1"; sha256="0aqzcll2ylzbbq42ns0hp7l9p6343l2qlsv5zkglla1bxdxl6m4h"; depends=[LRBaseDbi RSQLite]; }; LowMACAAnnotation = derive2 { name="LowMACAAnnotation"; version="0.99.3"; sha256="0ri301ci54s8wwkah1jccy5h44xg8yjk08j5b15qmdsm25hli4wm"; depends=[]; }; LymphoSeqDB = derive2 { name="LymphoSeqDB"; version="0.99.2"; sha256="1cdyn2imjh4zr23szndc4vwyiacxs1jsp14gil2dyq9aifa25qr7"; depends=[]; }; MafDb_1Kgenomes_phase1_GRCh38 = derive2 { name="MafDb.1Kgenomes.phase1.GRCh38"; version="3.7.0"; sha256="160whyhwjspqji6ys19qgi4y3k7z1qqzr75nhpw0yl8h1rc6rfg0"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; @@ -148,86 +164,91 @@ in with self; { MafDb_ExAC_r1_0_hs37d5 = derive2 { name="MafDb.ExAC.r1.0.hs37d5"; version="3.7.0"; sha256="00b022hzwr0l6m9wzw76iirdq5szvi5z8a9yi2i44sydhwqsb4cy"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; MafDb_ExAC_r1_0_nonTCGA_GRCh38 = derive2 { name="MafDb.ExAC.r1.0.nonTCGA.GRCh38"; version="3.7.0"; sha256="1dvzzwj9dhrls8caabdcgddsk64a6q9jqcya424h8n48fkx6fpjn"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; MafDb_ExAC_r1_0_nonTCGA_hs37d5 = derive2 { name="MafDb.ExAC.r1.0.nonTCGA.hs37d5"; version="3.7.0"; sha256="10rn7nqrnhmhdqcygi8l3cwf1385jyy56qzqjgqyhvmi4g8dnjsn"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; + MafDb_TOPMed_freeze5_hg19 = derive2 { name="MafDb.TOPMed.freeze5.hg19"; version="3.7.1"; sha256="0a8rgh3lkbplg3y1yl0804f55dlw7v8lcb33ygg8kg39dk60m102"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; MafDb_TOPMed_freeze5_hg38 = derive2 { name="MafDb.TOPMed.freeze5.hg38"; version="3.7.1"; sha256="1kxk3qqw1igkygqmj8yjl4cp99fan1w84gilh6q35nsaja0fapa8"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; + MafDb_gnomAD_r2_0_1_GRCh38 = derive2 { name="MafDb.gnomAD.r2.0.1.GRCh38"; version="3.7.0"; sha256="0dp82x6dag4ndizvppr2g5x1v8sbj08r6n7mi98c89fn4f7nvqqw"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; + MafDb_gnomAD_r2_0_1_hs37d5 = derive2 { name="MafDb.gnomAD.r2.0.1.hs37d5"; version="3.8.0"; sha256="0kb50g4kmj1b4xm9p8q6j1yzpv5ygxf71vqhkb7c0ajqffqbyznm"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; + MafDb_gnomAD_r2_1_hs37d5 = derive2 { name="MafDb.gnomAD.r2.1.hs37d5"; version="3.8.0"; sha256="00ld23685xlrkx9rpgrcqaycq3zxbxqg734r99avrw8p3lmj4fvc"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; MafDb_gnomADex_r2_0_1_GRCh38 = derive2 { name="MafDb.gnomADex.r2.0.1.GRCh38"; version="3.7.0"; sha256="0hwyyqa4g3hp85hk4b6qfzm10yk6h20sh0f2mf09yr0hpmkjyl59"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; - MafDb_gnomADex_r2_0_1_hs37d5 = derive2 { name="MafDb.gnomADex.r2.0.1.hs37d5"; version="3.7.0"; sha256="1y1kzbs37h804c81rll64kz83rpzmzl1z410frabyyblpxm275j5"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; - MeSH_AOR_db = derive2 { name="MeSH.AOR.db"; version="1.10.0"; sha256="0dc2j64v93j7gj28yl9lpbxdqlqszr8sn3p7jbkcwixgpczhqzbj"; depends=[MeSHDbi]; }; - MeSH_Aca_eg_db = derive2 { name="MeSH.Aca.eg.db"; version="1.10.0"; sha256="1p0495kyg2vcbf98scfxb1iidn4xvv1r1jwxx40g1fjwl1s0rm4k"; depends=[MeSHDbi]; }; - MeSH_Aga_PEST_eg_db = derive2 { name="MeSH.Aga.PEST.eg.db"; version="1.10.0"; sha256="0ipnzigw2791fgzr6s2a8m4idpicwlk46pplq9q3ql9ss0nw4swi"; depends=[MeSHDbi]; }; - MeSH_Ame_eg_db = derive2 { name="MeSH.Ame.eg.db"; version="1.10.0"; sha256="1kpr0li13kwn2ynnghaj775ln7zxim8jdasbrmnyrq8b61v1784s"; depends=[MeSHDbi]; }; - MeSH_Aml_eg_db = derive2 { name="MeSH.Aml.eg.db"; version="1.10.0"; sha256="0aa6qgk9vwdkwykkml10j0vcjp53ypa2p3p8za9qgfk0r19831wi"; depends=[MeSHDbi]; }; - MeSH_Ana_eg_db = derive2 { name="MeSH.Ana.eg.db"; version="1.10.0"; sha256="1v81wccvd2kgx05h2lffbdjkl8xsdb0f5h2i12csfnlhfgvgasdf"; depends=[MeSHDbi]; }; - MeSH_Ani_FGSC_eg_db = derive2 { name="MeSH.Ani.FGSC.eg.db"; version="1.10.0"; sha256="0caii8lq500rc5kaqq354zldrb2b0zapypqzr6kfh4swa6fa90x5"; depends=[MeSHDbi]; }; - MeSH_Ath_eg_db = derive2 { name="MeSH.Ath.eg.db"; version="1.10.0"; sha256="1x33f3g8951kawq3j1p1aic9jlx10dbf8qb1g0yrcrq1nvxnywlq"; depends=[MeSHDbi]; }; - MeSH_Bfl_eg_db = derive2 { name="MeSH.Bfl.eg.db"; version="1.10.0"; sha256="1inpqz39ingljyjsp9v7mfvx8jcmmmkc3p3k4ffcw9xfd17iiw9s"; depends=[MeSHDbi]; }; - MeSH_Bsu_168_eg_db = derive2 { name="MeSH.Bsu.168.eg.db"; version="1.10.0"; sha256="1bwmy42s7rvnng5p1lqcbjhxvw42pr9gbyp7r1951n69f1311n45"; depends=[MeSHDbi]; }; - MeSH_Bta_eg_db = derive2 { name="MeSH.Bta.eg.db"; version="1.10.0"; sha256="1fw30l682sfcpdqqg8r5vyk0slxx00k1agxgli1syhvhh1hrbnxx"; depends=[MeSHDbi]; }; - MeSH_Cal_SC5314_eg_db = derive2 { name="MeSH.Cal.SC5314.eg.db"; version="1.10.0"; sha256="0xgzsvqr62g8gipz1i73mxrbg8784axc6hj82v034i03zh0kz2rp"; depends=[MeSHDbi]; }; - MeSH_Cbr_eg_db = derive2 { name="MeSH.Cbr.eg.db"; version="1.10.0"; sha256="136cg8nmwhc6iplzj2wxmgy4nggi3532xv3kff0hx85g5nbj6k6g"; depends=[MeSHDbi]; }; - MeSH_Cel_eg_db = derive2 { name="MeSH.Cel.eg.db"; version="1.10.0"; sha256="05wj3ib1xjiy2asz41h32r29371qyd8dc3xrx78wwfj2a7760b4y"; depends=[MeSHDbi]; }; - MeSH_Cfa_eg_db = derive2 { name="MeSH.Cfa.eg.db"; version="1.10.0"; sha256="1b8jc8gc62knhkl0g6isx6d0kb2b33mydb0wpp3v0xlmzpv3f4qn"; depends=[MeSHDbi]; }; - MeSH_Cin_eg_db = derive2 { name="MeSH.Cin.eg.db"; version="1.10.0"; sha256="0qiwjxrjz7np4ml2hxdqfqmjaql5hgnzv2919rcxfikp5cxq7b51"; depends=[MeSHDbi]; }; - MeSH_Cja_eg_db = derive2 { name="MeSH.Cja.eg.db"; version="1.10.0"; sha256="06vk6imry285qcmgcrjqlxj0ihxqasg94ap18xcxiwwps1dbha89"; depends=[MeSHDbi]; }; - MeSH_Cpo_eg_db = derive2 { name="MeSH.Cpo.eg.db"; version="1.10.0"; sha256="1xv54fhn44l3kjgbmrga3lfqjjf3zgwprm0j518qlvycxvr41znr"; depends=[MeSHDbi]; }; - MeSH_Cre_eg_db = derive2 { name="MeSH.Cre.eg.db"; version="1.10.0"; sha256="0582xmkwmpr3hjsh9qzv6q60bypdmrk34rcp0jzzqjnfrn9mxasb"; depends=[MeSHDbi]; }; - MeSH_Dan_eg_db = derive2 { name="MeSH.Dan.eg.db"; version="1.10.0"; sha256="1cjzilbbw6r5sayy8bifx9rrbj3y95yzm8vdpxg5y1kvsa8047y1"; depends=[MeSHDbi]; }; - MeSH_Dda_3937_eg_db = derive2 { name="MeSH.Dda.3937.eg.db"; version="1.10.0"; sha256="099s4v5rr0jpzh8x60cjb7rxz8c4f8m2s3r09cgzi1fxpmmlzspm"; depends=[MeSHDbi]; }; - MeSH_Ddi_AX4_eg_db = derive2 { name="MeSH.Ddi.AX4.eg.db"; version="1.10.0"; sha256="0apr6i080wkhb5s5h6v64b40wdx6fygn422vllwicjkqxllbaa4x"; depends=[MeSHDbi]; }; - MeSH_Der_eg_db = derive2 { name="MeSH.Der.eg.db"; version="1.10.0"; sha256="1ln50lqba33vsvbk6wydgm2akpnvv92305zxcpbl6d2px0xbjldz"; depends=[MeSHDbi]; }; - MeSH_Dgr_eg_db = derive2 { name="MeSH.Dgr.eg.db"; version="1.10.0"; sha256="0nwag2828j1hqx6biihnpprzbrimc7as3nn3p4kkhs067bz457ny"; depends=[MeSHDbi]; }; - MeSH_Dme_eg_db = derive2 { name="MeSH.Dme.eg.db"; version="1.10.0"; sha256="1bcqyrcff510l5my5wha0yrl76wznm7xljlbv24q1i2mjb00x087"; depends=[MeSHDbi]; }; - MeSH_Dmo_eg_db = derive2 { name="MeSH.Dmo.eg.db"; version="1.10.0"; sha256="1zsq4fkr2bqcfdf1v5w3gn5x29f1q9y4b4qx7nhiipfwiybnjdpd"; depends=[MeSHDbi]; }; - MeSH_Dpe_eg_db = derive2 { name="MeSH.Dpe.eg.db"; version="1.10.0"; sha256="1xr4h3d3fs20cfwzaj1jjipfnbbvgmx7rlmxfvv8q8hxpfzp7vsp"; depends=[MeSHDbi]; }; - MeSH_Dre_eg_db = derive2 { name="MeSH.Dre.eg.db"; version="1.10.0"; sha256="1hjywgbgbpgsk8hhwlfz9phx3hwi14j9yxa8zmbas3w9cf9hg35a"; depends=[MeSHDbi]; }; - MeSH_Dse_eg_db = derive2 { name="MeSH.Dse.eg.db"; version="1.10.0"; sha256="05mhyfjj2m1mx575nyc53lrwhj0lip4bcv5xa37swz7n1x821bnq"; depends=[MeSHDbi]; }; - MeSH_Dsi_eg_db = derive2 { name="MeSH.Dsi.eg.db"; version="1.10.0"; sha256="03vrcnfcpj1ayrfawwqgvdvb7mymkwng36pr8p491l8vmk4yhsgs"; depends=[MeSHDbi]; }; - MeSH_Dvi_eg_db = derive2 { name="MeSH.Dvi.eg.db"; version="1.10.0"; sha256="113zcn037fx15g5xipz9bczw0b913yd8sp4l3yg8zffai8qmhwcj"; depends=[MeSHDbi]; }; - MeSH_Dya_eg_db = derive2 { name="MeSH.Dya.eg.db"; version="1.10.0"; sha256="00i6r7fhqrnbyxmkcpvsyhm1wzmskmrqnfsvd7ls0xcw3h6lpp7v"; depends=[MeSHDbi]; }; - MeSH_Eco_55989_eg_db = derive2 { name="MeSH.Eco.55989.eg.db"; version="1.10.0"; sha256="1azyzg3ak01mbgdw8l7csgiwpzd5fwk6h3x8n261xxm1yd5f1g9l"; depends=[MeSHDbi]; }; - MeSH_Eco_ED1a_eg_db = derive2 { name="MeSH.Eco.ED1a.eg.db"; version="1.10.0"; sha256="0j7rga9n6gl6k1gh5ppz742gy4swriwwnfavrjam6k6inl40as57"; depends=[MeSHDbi]; }; - MeSH_Eco_IAI39_eg_db = derive2 { name="MeSH.Eco.IAI39.eg.db"; version="1.10.0"; sha256="0cibmy5hyg7aw960cb9zbqdaabbh9f5mwlxdv9gynghkxrqppcaq"; depends=[MeSHDbi]; }; - MeSH_Eco_K12_MG1655_eg_db = derive2 { name="MeSH.Eco.K12.MG1655.eg.db"; version="1.10.0"; sha256="1yw0kamb6j25cv3fz7649n43slaxah0f6yzwhglsa4fjffam1ycm"; depends=[MeSHDbi]; }; - MeSH_Eco_O157_H7_Sakai_eg_db = derive2 { name="MeSH.Eco.O157.H7.Sakai.eg.db"; version="1.10.0"; sha256="129yw8yrm89rv999va8pn7513c0dl1r1xffsdc01i4wadhq3rrx0"; depends=[MeSHDbi]; }; - MeSH_Eco_UMN026_eg_db = derive2 { name="MeSH.Eco.UMN026.eg.db"; version="1.10.0"; sha256="17faizllk30rcw66arfr2nkcx4a70vkjzsca1zf7wpl9myad1r3q"; depends=[MeSHDbi]; }; - MeSH_Eqc_eg_db = derive2 { name="MeSH.Eqc.eg.db"; version="1.10.0"; sha256="1hqm92vmrg5s07dkr1xa7a2jwspx90v969piba3cf6gdmjw81p5j"; depends=[MeSHDbi]; }; - MeSH_Gga_eg_db = derive2 { name="MeSH.Gga.eg.db"; version="1.10.0"; sha256="06cvyg8ib4dkcn92br7wkx9bj36dji9lsn53aliyj6h5sq6ssvfn"; depends=[MeSHDbi]; }; - MeSH_Gma_eg_db = derive2 { name="MeSH.Gma.eg.db"; version="1.10.0"; sha256="11q2gv8c5cv7ll22f6w34pqr7r8jzgkx1bhwl4fj49s8n7rfh0cg"; depends=[MeSHDbi]; }; - MeSH_Hsa_eg_db = derive2 { name="MeSH.Hsa.eg.db"; version="1.10.0"; sha256="1gw20014wcf67n574p6r7cwcchyk3c915bbkqcwkj25bvvk4cmga"; depends=[MeSHDbi]; }; - MeSH_Laf_eg_db = derive2 { name="MeSH.Laf.eg.db"; version="1.10.0"; sha256="1hh81rhr3iq8a98w7lvbz6cwjq0hfcxrazv7sdy0pjggd12l991r"; depends=[MeSHDbi]; }; - MeSH_Lma_eg_db = derive2 { name="MeSH.Lma.eg.db"; version="1.10.0"; sha256="0p6zhf5fjh5bn1ibmmmjmnpfp2vplx84fa1zbs7djg96vpvz8flp"; depends=[MeSHDbi]; }; - MeSH_Mdo_eg_db = derive2 { name="MeSH.Mdo.eg.db"; version="1.10.0"; sha256="1f497wkvbgw11887gsbcygi38xj2fb4vxg34k3jf668yq1x25jcm"; depends=[MeSHDbi]; }; - MeSH_Mes_eg_db = derive2 { name="MeSH.Mes.eg.db"; version="1.10.0"; sha256="1mfg8vbqgqbb573ddv7pp3k2nl4gq27jc472rp4y3x4g8b2ci5hv"; depends=[MeSHDbi]; }; - MeSH_Mga_eg_db = derive2 { name="MeSH.Mga.eg.db"; version="1.10.0"; sha256="1l27hl4cl1h02k9al51485f61qlwwqmsgyp46dcvvdg1l8hlckmq"; depends=[MeSHDbi]; }; - MeSH_Miy_eg_db = derive2 { name="MeSH.Miy.eg.db"; version="1.10.0"; sha256="0vvkgbvg6kzl4w8jbvlvaawkxc2j3x1pipqf6q4niy0yk951r30r"; depends=[MeSHDbi]; }; - MeSH_Mml_eg_db = derive2 { name="MeSH.Mml.eg.db"; version="1.10.0"; sha256="02mp7q0g7by8ihjpjwc39d6kwnwpxkn6xhx9v6fzdfy4q558qpnk"; depends=[MeSHDbi]; }; - MeSH_Mmu_eg_db = derive2 { name="MeSH.Mmu.eg.db"; version="1.10.0"; sha256="1248y32km28aaj92caar8c97bmkml7853l8xp643vxawgwlmc7a6"; depends=[MeSHDbi]; }; - MeSH_Mtr_eg_db = derive2 { name="MeSH.Mtr.eg.db"; version="1.10.0"; sha256="09576k1m19mjsdm17iw78djn9pb21g5i237rqrdk709rifar6nny"; depends=[MeSHDbi]; }; - MeSH_Nle_eg_db = derive2 { name="MeSH.Nle.eg.db"; version="1.10.0"; sha256="0azrd1jmyyk6n9whgc3jdaqmalqal3vw6sx5cr84m9cbv9b9c9s1"; depends=[MeSHDbi]; }; - MeSH_Oan_eg_db = derive2 { name="MeSH.Oan.eg.db"; version="1.10.0"; sha256="0cgq3caxikrv22y19fg4gpphz4cf3xb2w0s0rsnmwb1bkj57y2x2"; depends=[MeSHDbi]; }; - MeSH_Ocu_eg_db = derive2 { name="MeSH.Ocu.eg.db"; version="1.10.0"; sha256="1w118c82694wplqr5q7wvzgcdhf9cm2cbyhajlvh9iad089m4cam"; depends=[MeSHDbi]; }; - MeSH_Oni_eg_db = derive2 { name="MeSH.Oni.eg.db"; version="1.10.0"; sha256="0ka2fsmznlaxn24sqg5fvfy7y9plwqywr75hxfxls3dcykhvsn4r"; depends=[MeSHDbi]; }; - MeSH_Osa_eg_db = derive2 { name="MeSH.Osa.eg.db"; version="1.10.0"; sha256="0cqwnjz77r5faf0gi39hg802hxwswzab56m8l55w9paxq4p5n1jx"; depends=[MeSHDbi]; }; - MeSH_PCR_db = derive2 { name="MeSH.PCR.db"; version="1.10.0"; sha256="0gjnbah7ik8sarx05y6hzl94s669j4c8gxi5n6fa6pb9b4kilqfw"; depends=[MeSHDbi]; }; - MeSH_Pab_eg_db = derive2 { name="MeSH.Pab.eg.db"; version="1.10.0"; sha256="11gfdh385vcyzwwszj8fjfbw06ksra677fhmj99f4nrbnvbdjlc8"; depends=[MeSHDbi]; }; - MeSH_Pae_PAO1_eg_db = derive2 { name="MeSH.Pae.PAO1.eg.db"; version="1.10.0"; sha256="0yb0qg11fwpk47kb06w4ck518jff9x2j4kkfi254lbn7asawlgv3"; depends=[MeSHDbi]; }; - MeSH_Pfa_3D7_eg_db = derive2 { name="MeSH.Pfa.3D7.eg.db"; version="1.10.0"; sha256="0fzcg6m73qa1fzzbq0kqir69axxcgilr0r3kgajrh8hfdrqvxhx2"; depends=[MeSHDbi]; }; - MeSH_Pto_eg_db = derive2 { name="MeSH.Pto.eg.db"; version="1.10.0"; sha256="0kmsmdpvjnfa2wqdpka70wl5cbpf7bc0bvnf2lj559sdg18glr0d"; depends=[MeSHDbi]; }; - MeSH_Ptr_eg_db = derive2 { name="MeSH.Ptr.eg.db"; version="1.10.0"; sha256="106wa8vv3v13yn3c3dfbqsp5gm8g2bh1r5yc6kynp3pyxxwnmmpi"; depends=[MeSHDbi]; }; - MeSH_Rno_eg_db = derive2 { name="MeSH.Rno.eg.db"; version="1.10.0"; sha256="000p0jvdwxjkkzh94llzxbhdp5q76d3n8wbgk7iblxwm7aq48q4l"; depends=[MeSHDbi]; }; - MeSH_Sce_S288c_eg_db = derive2 { name="MeSH.Sce.S288c.eg.db"; version="1.10.0"; sha256="04mn9gihl6zdv7d05f7q2jvr9xh6f2276p38rxq13xyh1y797lsf"; depends=[MeSHDbi]; }; - MeSH_Sco_A32_eg_db = derive2 { name="MeSH.Sco.A32.eg.db"; version="1.10.0"; sha256="1h8x4jwcn0dra927nb5s0dq2w4rv8vdmf82vd17xpj46f051k10m"; depends=[MeSHDbi]; }; - MeSH_Sil_eg_db = derive2 { name="MeSH.Sil.eg.db"; version="1.10.0"; sha256="09s2q794zylkv7ac73dja8cm3i33dv334dzyppw4d3hjdc7fbb8h"; depends=[MeSHDbi]; }; - MeSH_Spu_eg_db = derive2 { name="MeSH.Spu.eg.db"; version="1.10.0"; sha256="1dbhnyppwq1hhs71a123c0l3zlvmgzys71wlihvfp9cbz65cav6p"; depends=[MeSHDbi]; }; - MeSH_Ssc_eg_db = derive2 { name="MeSH.Ssc.eg.db"; version="1.10.0"; sha256="0m3pa3nap2z0sdw0fcx74jly8rkpvrqjzjhjqbck86zirzw48r82"; depends=[MeSHDbi]; }; - MeSH_Syn_eg_db = derive2 { name="MeSH.Syn.eg.db"; version="1.10.0"; sha256="000d65ba942dqk73jbp7hf8jkq5jhvy5b3xqqbmqjp0a3m1pm6ln"; depends=[MeSHDbi]; }; - MeSH_Tbr_9274_eg_db = derive2 { name="MeSH.Tbr.9274.eg.db"; version="1.10.0"; sha256="16294ss0i9vpsxapn0m6awf7bl8nglh6ir2i0z47985vaclzx86x"; depends=[MeSHDbi]; }; - MeSH_Tgo_ME49_eg_db = derive2 { name="MeSH.Tgo.ME49.eg.db"; version="1.10.0"; sha256="050lv051549bcx1n7hlbgh76wxwmz9yrdn0582ixmc240jvgg8xs"; depends=[MeSHDbi]; }; - MeSH_Tgu_eg_db = derive2 { name="MeSH.Tgu.eg.db"; version="1.10.0"; sha256="1nhnqljin6ia8ra6ma3hkabsnm7vqad411a6bb16yfn9c384c0x9"; depends=[MeSHDbi]; }; - MeSH_Vvi_eg_db = derive2 { name="MeSH.Vvi.eg.db"; version="1.10.0"; sha256="0zg433hj5f0l7lls4172lv3f3vnr90gc5fxiifpviam2ibv1r114"; depends=[MeSHDbi]; }; - MeSH_Xla_eg_db = derive2 { name="MeSH.Xla.eg.db"; version="1.10.0"; sha256="08yzw25ahckffy6sqwp0qbsp79jr00dk2qgs0g7k3yv7j86yfla9"; depends=[MeSHDbi]; }; - MeSH_Xtr_eg_db = derive2 { name="MeSH.Xtr.eg.db"; version="1.10.0"; sha256="0bkd4skxdv3ffhq21j74ghg1ksgd0666rbj89d3c01dyn0dhb1lv"; depends=[MeSHDbi]; }; - MeSH_Zma_eg_db = derive2 { name="MeSH.Zma.eg.db"; version="1.10.0"; sha256="0zhkq8skl4ahbqims1s72m5mf59lvjvzz1x6fg9kwbskfv4y3i93"; depends=[MeSHDbi]; }; - MeSH_db = derive2 { name="MeSH.db"; version="1.10.0"; sha256="1vh7r2din6746z2v4z42inhyyhywi9lahwszm6z42rirzxhcg3xz"; depends=[MeSHDbi]; }; + MafDb_gnomADex_r2_0_1_hs37d5 = derive2 { name="MafDb.gnomADex.r2.0.1.hs37d5"; version="3.8.0"; sha256="0xz6ayip0cdbal6gsc8wpjyg3rr1kadaddv8flw5k8ky84mckzbc"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; + MafDb_gnomADex_r2_1_hs37d5 = derive2 { name="MafDb.gnomADex.r2.1.hs37d5"; version="3.8.0"; sha256="06vicw9z05j1pw30sw0f2nkcixc14yn3anq0g3317i3rb1kvmwid"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; + MeSH_AOR_db = derive2 { name="MeSH.AOR.db"; version="1.11.0"; sha256="02ysykmbn1b6rv3fbq71g9lnv16gvxyvb9p9smvm0k9brb7s0q24"; depends=[MeSHDbi]; }; + MeSH_Aca_eg_db = derive2 { name="MeSH.Aca.eg.db"; version="1.11.0"; sha256="13x69ki5g99hravrfdll98z2n7nghvf02v920q4g2bgjzzh68sks"; depends=[MeSHDbi]; }; + MeSH_Aga_PEST_eg_db = derive2 { name="MeSH.Aga.PEST.eg.db"; version="1.11.0"; sha256="1sffv89v1vrlgy36kf7q7ixnc2iwfaa2h0dsxrg0pjmzsq669h9s"; depends=[MeSHDbi]; }; + MeSH_Ame_eg_db = derive2 { name="MeSH.Ame.eg.db"; version="1.11.0"; sha256="0ssivaq31rjagw5sdjg9ai3bm73mdvdrkqz0snf3phdgxpvldqms"; depends=[MeSHDbi]; }; + MeSH_Aml_eg_db = derive2 { name="MeSH.Aml.eg.db"; version="1.11.0"; sha256="0cl95vipqcjf1pb9bjzvxa4dc0d5rzac84n9f6l061vhifa2c3pn"; depends=[MeSHDbi]; }; + MeSH_Ana_eg_db = derive2 { name="MeSH.Ana.eg.db"; version="1.11.0"; sha256="190h3pch16bzx0h674kwywcy3pr1y16jbzczbmmvsxg1l2j549zm"; depends=[MeSHDbi]; }; + MeSH_Ani_FGSC_eg_db = derive2 { name="MeSH.Ani.FGSC.eg.db"; version="1.11.0"; sha256="0w6gq9xy1v84ksbd849jpj073s51fbhgss8wl6ax4ybxvfp22m0s"; depends=[MeSHDbi]; }; + MeSH_Ath_eg_db = derive2 { name="MeSH.Ath.eg.db"; version="1.11.0"; sha256="0jdxvnhxrajhd5dr6hzfii7b1n6x874qfc8999pw8y8rwh8c4ln7"; depends=[MeSHDbi]; }; + MeSH_Bfl_eg_db = derive2 { name="MeSH.Bfl.eg.db"; version="1.11.0"; sha256="0vqyanf9n9ji77zkck3vyrrhm87hx3yxiy9fpwal6a0vh31vrjb9"; depends=[MeSHDbi]; }; + MeSH_Bsu_168_eg_db = derive2 { name="MeSH.Bsu.168.eg.db"; version="1.11.0"; sha256="11f9jibxf0amhixhs2pvmx6ir1530qkm9xcjrj09hwyx687bs3z8"; depends=[MeSHDbi]; }; + MeSH_Bta_eg_db = derive2 { name="MeSH.Bta.eg.db"; version="1.11.0"; sha256="03nbmbnbfvpja1p9rnqy1mpamlab0fd2y4fkx456jmnl87m1zk0n"; depends=[MeSHDbi]; }; + MeSH_Cal_SC5314_eg_db = derive2 { name="MeSH.Cal.SC5314.eg.db"; version="1.11.0"; sha256="0pd9gigwrckz9drh3x7n9nvvcq2q2wwmczkhhkqlpp4qhg85yp7g"; depends=[MeSHDbi]; }; + MeSH_Cbr_eg_db = derive2 { name="MeSH.Cbr.eg.db"; version="1.11.0"; sha256="1rjb9ldrn2jg73p2j9mjn61ljw83bhr07yq7482lp4mglhwvqibm"; depends=[MeSHDbi]; }; + MeSH_Cel_eg_db = derive2 { name="MeSH.Cel.eg.db"; version="1.11.0"; sha256="14ywqllqgynwfxyxrkw2d6r7m2n82znx9s15l62d7jb88pvaajn6"; depends=[MeSHDbi]; }; + MeSH_Cfa_eg_db = derive2 { name="MeSH.Cfa.eg.db"; version="1.11.0"; sha256="0b5b5dyh99gykdp3whdz7rjz1862p3w4jigy7s1bjmhv4pm3bn2d"; depends=[MeSHDbi]; }; + MeSH_Cin_eg_db = derive2 { name="MeSH.Cin.eg.db"; version="1.11.0"; sha256="1cbwqyb4ja10j0250lggbpxgpivf0xj1m7hn4l687rdidxgrmy4s"; depends=[MeSHDbi]; }; + MeSH_Cja_eg_db = derive2 { name="MeSH.Cja.eg.db"; version="1.11.0"; sha256="0b5q8yclcx18f8aq45ikv7qyw0xfsksjf1fbl6fprflvzfz2cnir"; depends=[MeSHDbi]; }; + MeSH_Cpo_eg_db = derive2 { name="MeSH.Cpo.eg.db"; version="1.11.0"; sha256="1rd90rzipaa480sahh7pqlv1qzj1wcx543gkshj6mcfkr6r08zci"; depends=[MeSHDbi]; }; + MeSH_Cre_eg_db = derive2 { name="MeSH.Cre.eg.db"; version="1.11.0"; sha256="0xg2mi60qlg76g1zxmybcixci8nivw4ld91qxf13jybcr0mwf9xn"; depends=[MeSHDbi]; }; + MeSH_Dan_eg_db = derive2 { name="MeSH.Dan.eg.db"; version="1.11.0"; sha256="0l80s6v7p2n7p17chbk6a7y5y2b02z38x034jwg3yvyfqy073r11"; depends=[MeSHDbi]; }; + MeSH_Dda_3937_eg_db = derive2 { name="MeSH.Dda.3937.eg.db"; version="1.11.0"; sha256="187zq75qz7jysz8jg5k5sgvxkrpvdyyi8xlsidi774nyb7z5d96l"; depends=[MeSHDbi]; }; + MeSH_Ddi_AX4_eg_db = derive2 { name="MeSH.Ddi.AX4.eg.db"; version="1.11.0"; sha256="1aicyzgw5nx6z9q339cd1iabi7a1yjswla0j94anqwh783lqrpxq"; depends=[MeSHDbi]; }; + MeSH_Der_eg_db = derive2 { name="MeSH.Der.eg.db"; version="1.11.0"; sha256="03rvcxawyhckg693w2ngnk3sljgz7idha6iqyax8p8wagl2h5ipv"; depends=[MeSHDbi]; }; + MeSH_Dgr_eg_db = derive2 { name="MeSH.Dgr.eg.db"; version="1.11.0"; sha256="17d3ankadjsvddfqxqm3hnqcmsr2rknkbvraq6zpdl7xw3r21yfn"; depends=[MeSHDbi]; }; + MeSH_Dme_eg_db = derive2 { name="MeSH.Dme.eg.db"; version="1.11.0"; sha256="1j3wsmspg7w30y04l173pihac9xg633w8zj2scz6jnph6rgxw3p1"; depends=[MeSHDbi]; }; + MeSH_Dmo_eg_db = derive2 { name="MeSH.Dmo.eg.db"; version="1.11.0"; sha256="0640jfik9qp15h5180rn1afd2kv2wh5s0nbv2zjiz6089csb2fnf"; depends=[MeSHDbi]; }; + MeSH_Dpe_eg_db = derive2 { name="MeSH.Dpe.eg.db"; version="1.11.0"; sha256="1y058sma4p48fj5f8v2i79nak5892pkk7rmr3i18jv44c8246zzl"; depends=[MeSHDbi]; }; + MeSH_Dre_eg_db = derive2 { name="MeSH.Dre.eg.db"; version="1.11.0"; sha256="03dybrs5zhnil83jp37hq4rh8ybvyjnqpkr2vwa7f1kd65mq33za"; depends=[MeSHDbi]; }; + MeSH_Dse_eg_db = derive2 { name="MeSH.Dse.eg.db"; version="1.11.0"; sha256="032kjhsm39jck9gxlg15g4x6n4r2iyi339vm6b9v4xcays45h9hi"; depends=[MeSHDbi]; }; + MeSH_Dsi_eg_db = derive2 { name="MeSH.Dsi.eg.db"; version="1.11.0"; sha256="0h60gqkc4cjkbqs8i3x6z774qq4ihp20bssi70wli6fvsiysgbly"; depends=[MeSHDbi]; }; + MeSH_Dvi_eg_db = derive2 { name="MeSH.Dvi.eg.db"; version="1.11.0"; sha256="1c8rg4h6gcs4y5gxz1z66a0ma3xpg4sdp6zwzcyrq02r2vjwj6ls"; depends=[MeSHDbi]; }; + MeSH_Dya_eg_db = derive2 { name="MeSH.Dya.eg.db"; version="1.11.0"; sha256="03aycm5222wkx6rh7x204rkcxnh6amghm2zpzqiy4c5a2a871y9d"; depends=[MeSHDbi]; }; + MeSH_Eco_55989_eg_db = derive2 { name="MeSH.Eco.55989.eg.db"; version="1.11.0"; sha256="0qqwwa3hk8ds2nv7xndqx4z9s00524sqrpgxh690yhdczn1ridqd"; depends=[MeSHDbi]; }; + MeSH_Eco_ED1a_eg_db = derive2 { name="MeSH.Eco.ED1a.eg.db"; version="1.11.0"; sha256="1v47a80lvhhbl7sqx881nx1m4pqi6mprmgd03cvk4vhrgv74ji8f"; depends=[MeSHDbi]; }; + MeSH_Eco_IAI39_eg_db = derive2 { name="MeSH.Eco.IAI39.eg.db"; version="1.11.0"; sha256="0mpabfvji1y1irgm5wkbinabriwbbb6wg6a0rc4mq5vn6j8nia36"; depends=[MeSHDbi]; }; + MeSH_Eco_K12_MG1655_eg_db = derive2 { name="MeSH.Eco.K12.MG1655.eg.db"; version="1.11.0"; sha256="1sb0b82ibvk2n22a88c7qkmb3wch6zcgaah54p920dih2xxx24nb"; depends=[MeSHDbi]; }; + MeSH_Eco_O157_H7_Sakai_eg_db = derive2 { name="MeSH.Eco.O157.H7.Sakai.eg.db"; version="1.11.0"; sha256="1i65691h3w34kvqswfkg6klpj8gm39p6csa8da4hlbwc7q58zzpf"; depends=[MeSHDbi]; }; + MeSH_Eco_UMN026_eg_db = derive2 { name="MeSH.Eco.UMN026.eg.db"; version="1.11.0"; sha256="12yrsy71g0r6w028i56kxknkb4gr34x4d6064m61023234j31j69"; depends=[MeSHDbi]; }; + MeSH_Eqc_eg_db = derive2 { name="MeSH.Eqc.eg.db"; version="1.11.0"; sha256="19ihdqwlrifd6nyi1bbxnjbq7qqb535d47mm5h0f1pz2h6w6jps6"; depends=[MeSHDbi]; }; + MeSH_Gga_eg_db = derive2 { name="MeSH.Gga.eg.db"; version="1.11.0"; sha256="1f2f9vqdaqi6iak6yg3rcgcpvhaz76zl4hywnlz1gi7aszxiff0k"; depends=[MeSHDbi]; }; + MeSH_Gma_eg_db = derive2 { name="MeSH.Gma.eg.db"; version="1.11.0"; sha256="075hhjahc34bznvmqrlc6vnlq25c4ybsyd6ry5qmnzccpxyqhgv8"; depends=[MeSHDbi]; }; + MeSH_Hsa_eg_db = derive2 { name="MeSH.Hsa.eg.db"; version="1.11.0"; sha256="0c7kb73jrr74a05jgyf903bvy92pn23aklflnl2cqqwxqjc6f9hm"; depends=[MeSHDbi]; }; + MeSH_Laf_eg_db = derive2 { name="MeSH.Laf.eg.db"; version="1.11.0"; sha256="1zg7c08z6j02sg74ff1q3hnmy5bszd6g5dyr0hxxqivx28bmirya"; depends=[MeSHDbi]; }; + MeSH_Lma_eg_db = derive2 { name="MeSH.Lma.eg.db"; version="1.11.0"; sha256="1p70v5bvhawsh954mmnxiy734n0z6b0mfl4j3i2g3jijwrds9f6v"; depends=[MeSHDbi]; }; + MeSH_Mdo_eg_db = derive2 { name="MeSH.Mdo.eg.db"; version="1.11.0"; sha256="0997k7iwq49sf2fn88lgx5j3rhsv9g7mldsm2bpsqmw52d8j568f"; depends=[MeSHDbi]; }; + MeSH_Mes_eg_db = derive2 { name="MeSH.Mes.eg.db"; version="1.11.0"; sha256="16pxwy7yycdp59j3nvz58jc8h2y251b4prpk4nn589z7pk37hw52"; depends=[MeSHDbi]; }; + MeSH_Mga_eg_db = derive2 { name="MeSH.Mga.eg.db"; version="1.11.0"; sha256="0dmdfi983i2sf56b06p7q1w7n8ik3j1dkfw1x1cc207wmmns4916"; depends=[MeSHDbi]; }; + MeSH_Miy_eg_db = derive2 { name="MeSH.Miy.eg.db"; version="1.11.0"; sha256="024076n31mpz2fr7dbf5di6gxn1w1gajx95065vl4555zx46i9n1"; depends=[MeSHDbi]; }; + MeSH_Mml_eg_db = derive2 { name="MeSH.Mml.eg.db"; version="1.11.0"; sha256="0rbnysb12i2f1a9xz0869m5n031j60c8bxnj1cp0zxlnylamf7w0"; depends=[MeSHDbi]; }; + MeSH_Mmu_eg_db = derive2 { name="MeSH.Mmu.eg.db"; version="1.11.0"; sha256="1h9jz00bgz54nknl95jf60qqgmn5iyq766sdkxn7r54h9315c9g9"; depends=[MeSHDbi]; }; + MeSH_Mtr_eg_db = derive2 { name="MeSH.Mtr.eg.db"; version="1.11.0"; sha256="1b4nhix3ky4d0cm8hix9m7chcgdyskvd0h7fj3k13a4zxyxvfw9x"; depends=[MeSHDbi]; }; + MeSH_Nle_eg_db = derive2 { name="MeSH.Nle.eg.db"; version="1.11.0"; sha256="16fcswjrv056g5d6ikf2g8af470djf02pyxhp5ib6gk932vl7kp0"; depends=[MeSHDbi]; }; + MeSH_Oan_eg_db = derive2 { name="MeSH.Oan.eg.db"; version="1.11.0"; sha256="08cdkyvwss0cczd6j19j02950jpqhhzi79y9swqnzzh3nydb3aqj"; depends=[MeSHDbi]; }; + MeSH_Ocu_eg_db = derive2 { name="MeSH.Ocu.eg.db"; version="1.11.0"; sha256="09nigd6hc3iy3s2r70ixfyj04la8cnaxhvr5i1k0adapjgf4q1mx"; depends=[MeSHDbi]; }; + MeSH_Oni_eg_db = derive2 { name="MeSH.Oni.eg.db"; version="1.11.0"; sha256="1cwhbrpiznkfbkxchpddkr68jzcxzn0mvn8cy81dm0vj4x8dxjb8"; depends=[MeSHDbi]; }; + MeSH_Osa_eg_db = derive2 { name="MeSH.Osa.eg.db"; version="1.11.0"; sha256="0psaqhdi4hicy5vkngkh7ig5ndsjl768n9fg36zlvqllww58kfis"; depends=[MeSHDbi]; }; + MeSH_PCR_db = derive2 { name="MeSH.PCR.db"; version="1.11.0"; sha256="0jdwxkwinbnvap0mpirzcd4zgfvhsmca2r57s2lzh2i1x24hxa4c"; depends=[MeSHDbi]; }; + MeSH_Pab_eg_db = derive2 { name="MeSH.Pab.eg.db"; version="1.11.0"; sha256="16qcm0d8m53dkwfbcsygbm3xj7x6hblwpa4agds5vnlkb26m48qn"; depends=[MeSHDbi]; }; + MeSH_Pae_PAO1_eg_db = derive2 { name="MeSH.Pae.PAO1.eg.db"; version="1.11.0"; sha256="1w3zqynqjv79ixxnmn3khvj3p6586nq48dx00rap6vzirmhzigqv"; depends=[MeSHDbi]; }; + MeSH_Pfa_3D7_eg_db = derive2 { name="MeSH.Pfa.3D7.eg.db"; version="1.11.0"; sha256="0ryxhk5g07fpnnk72q5a2847k6w509956fcxnrvwvp7f98p3z50x"; depends=[MeSHDbi]; }; + MeSH_Pto_eg_db = derive2 { name="MeSH.Pto.eg.db"; version="1.11.0"; sha256="0i1772rpq95ppzxa809ms1r65d9rk5vqhcl36ndjs2lhzdydw8fz"; depends=[MeSHDbi]; }; + MeSH_Ptr_eg_db = derive2 { name="MeSH.Ptr.eg.db"; version="1.11.0"; sha256="0xgi89vzhxkmqx0y84i58jkxikksqdi64r82p59ir6l1anpyvvc9"; depends=[MeSHDbi]; }; + MeSH_Rno_eg_db = derive2 { name="MeSH.Rno.eg.db"; version="1.11.0"; sha256="0g0fnackq1yjaw0b3ppzbcj0sfx288wm6cv57ly69svfg1n0wlk5"; depends=[MeSHDbi]; }; + MeSH_Sce_S288c_eg_db = derive2 { name="MeSH.Sce.S288c.eg.db"; version="1.11.0"; sha256="1z29d19is5lq8rqrkk1dyifgn0v2i68pbw8i7dlwnnicj2sfpynb"; depends=[MeSHDbi]; }; + MeSH_Sco_A32_eg_db = derive2 { name="MeSH.Sco.A32.eg.db"; version="1.11.0"; sha256="0dcxjlpc9diz1lvrkpbrab5zjz96r837x7ij9786966a3x458xk0"; depends=[MeSHDbi]; }; + MeSH_Sil_eg_db = derive2 { name="MeSH.Sil.eg.db"; version="1.11.0"; sha256="0gpj4i2mls1qkyivxy2gk3b8w9vkxnwf2b0cpmbv5bvpjcsbw47i"; depends=[MeSHDbi]; }; + MeSH_Spu_eg_db = derive2 { name="MeSH.Spu.eg.db"; version="1.11.0"; sha256="14knm1h8mp5qfjbny2wwkj772x72laxgymhsa04m78mb38qhypwq"; depends=[MeSHDbi]; }; + MeSH_Ssc_eg_db = derive2 { name="MeSH.Ssc.eg.db"; version="1.11.0"; sha256="0hwgkq669g99yrkbpk3pjpxbz7q0vwvkcx3rrvdk9dnjinlbcn54"; depends=[MeSHDbi]; }; + MeSH_Syn_eg_db = derive2 { name="MeSH.Syn.eg.db"; version="1.11.0"; sha256="1mz986apgfd6sn62wws948yi46r87fzaszxnv450fgc42l23l0jx"; depends=[MeSHDbi]; }; + MeSH_Tbr_9274_eg_db = derive2 { name="MeSH.Tbr.9274.eg.db"; version="1.11.0"; sha256="0dvz5xbx6vdmqibpq8xmpdjfvvqw7iqq3w4d350sxj5kaw2afp5s"; depends=[MeSHDbi]; }; + MeSH_Tgo_ME49_eg_db = derive2 { name="MeSH.Tgo.ME49.eg.db"; version="1.11.0"; sha256="08hyvaqsvdpcizsqr53ab6bfh1fnlsj8d62pq03lpgr96rlyqi8q"; depends=[MeSHDbi]; }; + MeSH_Tgu_eg_db = derive2 { name="MeSH.Tgu.eg.db"; version="1.11.0"; sha256="0mid3qmv7kxc7kn69vbhgchvrbv4fig97nw9zxsbd0rj66abzas2"; depends=[MeSHDbi]; }; + MeSH_Vvi_eg_db = derive2 { name="MeSH.Vvi.eg.db"; version="1.11.0"; sha256="1pwq58mm7ripnzxcn13k1y157pjasrv30xxmrrqb4rv55nk61vbf"; depends=[MeSHDbi]; }; + MeSH_Xla_eg_db = derive2 { name="MeSH.Xla.eg.db"; version="1.11.0"; sha256="0qd75lkyrs864sy3sci3bablipn9gabk24wbriis9bi0qf7hccv5"; depends=[MeSHDbi]; }; + MeSH_Xtr_eg_db = derive2 { name="MeSH.Xtr.eg.db"; version="1.11.0"; sha256="0djsx876h0xz0h8jhs6yad8iqqjlr72b0fxasqgh89zpfp2hkvwd"; depends=[MeSHDbi]; }; + MeSH_Zma_eg_db = derive2 { name="MeSH.Zma.eg.db"; version="1.11.0"; sha256="08b92lhq2gbvbm7y0q4zc991wi1fjhm68n03b782h2g6syczmlma"; depends=[MeSHDbi]; }; + MeSH_db = derive2 { name="MeSH.db"; version="1.11.0"; sha256="1l6hynwmhb8p666q8n9dnvd0nhjy1f9nz2jg3z2p13dc5jl6syiw"; depends=[MeSHDbi]; }; MmAgilentDesign026655_db = derive2 { name="MmAgilentDesign026655.db"; version="3.2.3"; sha256="00d0yjcb5id7zacx4bzdwy4q6f4qvnnx8ph4d4xz1fmcbspz2qiz"; depends=[AnnotationDbi org_Mm_eg_db]; }; MoExExonProbesetLocation = derive2 { name="MoExExonProbesetLocation"; version="1.15.0"; sha256="0bvj3bji4bwwmxjz4b57n1aqypdibdmry30rfwmlxss1hav96sl7"; depends=[AnnotationDbi]; }; Mu15v1_db = derive2 { name="Mu15v1.db"; version="3.2.3"; sha256="0qchqkbx6ybijab8qhflxj33kwksfll1d3d3917vydjac9fzw1lz"; depends=[AnnotationDbi org_Mm_eg_db]; }; @@ -236,7 +257,7 @@ in with self; { Norway981_db = derive2 { name="Norway981.db"; version="3.2.3"; sha256="04ngc2hilqi9m7933mnm7jcvkxlz68vqqh5b628db575vcxql9b9"; depends=[AnnotationDbi org_Hs_eg_db]; }; OperonHumanV3_db = derive2 { name="OperonHumanV3.db"; version="3.2.3"; sha256="082gff88cwk2p50q8g9bixggacaclgqcvk6w5dc11h9fkgvd160i"; depends=[AnnotationDbi org_Hs_eg_db]; }; PANTHER_db = derive2 { name="PANTHER.db"; version="1.0.4"; sha256="1vl8anixkhcb9axlszk479yaw48bz1hhgmff41nqk8k8w4jkyn1y"; depends=[AnnotationDbi RSQLite]; }; - PFAM_db = derive2 { name="PFAM.db"; version="3.6.0"; sha256="1zlrwps1kwl2h0cmvh0qqmn93n2md6yrkm47nz2vy080dry0q0ix"; depends=[AnnotationDbi]; }; + PFAM_db = derive2 { name="PFAM.db"; version="3.7.0"; sha256="0ih3xz8vk80xzqwgv6ff3rp1a24qhwd1v1frkq1m6d981g7ymdap"; depends=[AnnotationDbi]; }; POCRCannotation_db = derive2 { name="POCRCannotation.db"; version="3.2.3"; sha256="0ybvs4hrxpivdkhm0fxpib11vlxqqdk8prlyj78vj5qzyb3iy89d"; depends=[AnnotationDbi org_Hs_eg_db]; }; PartheenMetaData_db = derive2 { name="PartheenMetaData.db"; version="3.2.3"; sha256="0d37c5b7s3fgkkvg7sj7gl9ksrjk5pyyv54vkys8w3qwgsm8yrdz"; depends=[AnnotationDbi org_Hs_eg_db]; }; PolyPhen_Hsapiens_dbSNP131 = derive2 { name="PolyPhen.Hsapiens.dbSNP131"; version="1.0.2"; sha256="1kikygkli41sn3rqihz0924prmqg2264ifj29vmg1a7qccm0kf7c"; depends=[AnnotationDbi RSQLite VariantAnnotation]; }; @@ -257,38 +278,39 @@ in with self; { SNPlocs_Hsapiens_dbSNP144_GRCh38 = derive2 { name="SNPlocs.Hsapiens.dbSNP144.GRCh38"; version="0.99.20"; sha256="0yxmsnxncr7w30r0d7bg5i96pclm2vf40p9jdqa02rc67a6sximn"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; SNPlocs_Hsapiens_dbSNP149_GRCh38 = derive2 { name="SNPlocs.Hsapiens.dbSNP149.GRCh38"; version="0.99.20"; sha256="17bv25p1261hn9d7mxfp6pvivj15pxyvr92gms8a8msfqg9y0xkb"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; SNPlocs_Hsapiens_dbSNP150_GRCh38 = derive2 { name="SNPlocs.Hsapiens.dbSNP150.GRCh38"; version="0.99.20"; sha256="0jkwwgxxpm9ry8kizq8hs70sky41pks1ag40y5aqq91yjbpqlckj"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; + SNPlocs_Hsapiens_dbSNP151_GRCh38 = derive2 { name="SNPlocs.Hsapiens.dbSNP151.GRCh38"; version="0.99.20"; sha256="19mmzlg76hh0imrqf135kcbwxkmm403gj9y7wk6ij9k12afr9kfz"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; TxDb_Athaliana_BioMart_plantsmart22 = derive2 { name="TxDb.Athaliana.BioMart.plantsmart22"; version="3.0.1"; sha256="0j2zr4cddad7z1lxx9m9kfgyy7jajjnblpk9j8igd39ia3ixrpzc"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Athaliana_BioMart_plantsmart25 = derive2 { name="TxDb.Athaliana.BioMart.plantsmart25"; version="3.1.3"; sha256="0a6v0l6p13zmiysi3k8dxzdlxng552qqj9rnlbdavdiidla0pvm3"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Athaliana_BioMart_plantsmart28 = derive2 { name="TxDb.Athaliana.BioMart.plantsmart28"; version="3.2.2"; sha256="1yjyvrbx55y024lqg3b2rlf8pngqw5xi3p83j5ipan05wf0aq6ir"; depends=[AnnotationDbi GenomicFeatures]; }; - TxDb_Btaurus_UCSC_bosTau8_refGene = derive2 { name="TxDb.Btaurus.UCSC.bosTau8.refGene"; version="3.4.3"; sha256="1i4r6gmw2kv67hiwc5k2f0jzh87nx2l8q8ksxqy9hdn1q5wpsrxl"; depends=[AnnotationDbi GenomicFeatures]; }; - TxDb_Celegans_UCSC_ce11_refGene = derive2 { name="TxDb.Celegans.UCSC.ce11.refGene"; version="3.4.3"; sha256="1q68ds8j7m4a1sagn1ypc6p7qqdkdvmhjg7z57ksdl3w4rhkk1w9"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Btaurus_UCSC_bosTau8_refGene = derive2 { name="TxDb.Btaurus.UCSC.bosTau8.refGene"; version="3.4.4"; sha256="18gmx57savyvvdkgnrvmc4xj3xrakybyx4pkfmpabnqy29z6n71q"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Celegans_UCSC_ce11_refGene = derive2 { name="TxDb.Celegans.UCSC.ce11.refGene"; version="3.4.4"; sha256="04jcx40z2380x760wbl686zvm780y38kls1js215jhmw7hff8md5"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Celegans_UCSC_ce6_ensGene = derive2 { name="TxDb.Celegans.UCSC.ce6.ensGene"; version="3.2.2"; sha256="1sgppva33cdy4isj2is8mfalj5gmmkpbkq9w1d83a4agcq31mi90"; depends=[AnnotationDbi GenomicFeatures]; }; - TxDb_Cfamiliaris_UCSC_canFam3_refGene = derive2 { name="TxDb.Cfamiliaris.UCSC.canFam3.refGene"; version="3.4.3"; sha256="1yh4cp509rfw5xj0la49gyxy26l8fasap7dhianhhfnsdqkayzrs"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Cfamiliaris_UCSC_canFam3_refGene = derive2 { name="TxDb.Cfamiliaris.UCSC.canFam3.refGene"; version="3.4.4"; sha256="1rl7yc2csc3fs2iri0kkvpjv34jnhkzc0jhh2a3hnyvhv55lzmf0"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Dmelanogaster_UCSC_dm3_ensGene = derive2 { name="TxDb.Dmelanogaster.UCSC.dm3.ensGene"; version="3.2.2"; sha256="1337x23rdmiiza83ms225kri37h16q5hw1lw0m577abcgip3d7c7"; depends=[AnnotationDbi GenomicFeatures]; }; - TxDb_Dmelanogaster_UCSC_dm6_ensGene = derive2 { name="TxDb.Dmelanogaster.UCSC.dm6.ensGene"; version="3.4.1"; sha256="0sdw0gbk84lfjmiyy2x4q01zh1vbjq3vfziwxkb4h0v6nab63k01"; depends=[AnnotationDbi GenomicFeatures]; }; - TxDb_Drerio_UCSC_danRer10_refGene = derive2 { name="TxDb.Drerio.UCSC.danRer10.refGene"; version="3.4.3"; sha256="03awii2bq91glqwklr0m48p6qlxq4rij39ncq2f6sbzw5iqqjjbr"; depends=[AnnotationDbi GenomicFeatures]; }; - TxDb_Ggallus_UCSC_galGal4_refGene = derive2 { name="TxDb.Ggallus.UCSC.galGal4.refGene"; version="3.4.3"; sha256="1a17401a8lfkv7acxxsh02yrmrmw7mj3207jgrcxjmbd6sicymy8"; depends=[AnnotationDbi GenomicFeatures]; }; - TxDb_Ggallus_UCSC_galGal5_refGene = derive2 { name="TxDb.Ggallus.UCSC.galGal5.refGene"; version="3.4.3"; sha256="124hdrj3n77pw7jkxfga8b4flp5xlzynn50fpfjh163jkdb6r9ij"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Dmelanogaster_UCSC_dm6_ensGene = derive2 { name="TxDb.Dmelanogaster.UCSC.dm6.ensGene"; version="3.4.4"; sha256="18nwjnkbrvrkk6g5jns3h55874hk92fdbrfyjvvxk4daw0p7gii8"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Drerio_UCSC_danRer10_refGene = derive2 { name="TxDb.Drerio.UCSC.danRer10.refGene"; version="3.4.4"; sha256="1ck4ymlxj0fjrbgxzgdqgbyl3z4nqyc6bczw1cgwblmcv52h3cj0"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Ggallus_UCSC_galGal4_refGene = derive2 { name="TxDb.Ggallus.UCSC.galGal4.refGene"; version="3.4.4"; sha256="1cxdrdg3pqwi0rfk5bzik05r1hvxwsva862b7cf7pfcf202dkqg5"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Ggallus_UCSC_galGal5_refGene = derive2 { name="TxDb.Ggallus.UCSC.galGal5.refGene"; version="3.4.4"; sha256="15laq4kdm85755lk176lqsi2aryi9i85b4c1arrj4qgjkjrbylvq"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Hsapiens_BioMart_igis = derive2 { name="TxDb.Hsapiens.BioMart.igis"; version="2.3.2"; sha256="0590a2hkrpm33hmjg5g0gm6sig3xvc09m0q6lwmafgaajf90h6ky"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Hsapiens_UCSC_hg18_knownGene = derive2 { name="TxDb.Hsapiens.UCSC.hg18.knownGene"; version="3.2.2"; sha256="1yk9ggclkqqfzrdp8gcqyplvif824pa7df54ck5gb1xb9q5s975w"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Hsapiens_UCSC_hg19_knownGene = derive2 { name="TxDb.Hsapiens.UCSC.hg19.knownGene"; version="3.2.2"; sha256="1sajhcqqwazgz2lqbik7rd935i7kpnh08zxbp2ra10j72yqy4g86"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Hsapiens_UCSC_hg19_lincRNAsTranscripts = derive2 { name="TxDb.Hsapiens.UCSC.hg19.lincRNAsTranscripts"; version="3.2.2"; sha256="0bmbp7kydvviczw8axgxq2wdlwq6fdas90jk9bg56avjq5syws2g"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Hsapiens_UCSC_hg38_knownGene = derive2 { name="TxDb.Hsapiens.UCSC.hg38.knownGene"; version="3.4.0"; sha256="0i0xw0mcn403r911ijqdnrwg9k5bspdnjibfjvnhxq4h8vcfprn5"; depends=[AnnotationDbi GenomicFeatures]; }; - TxDb_Mmulatta_UCSC_rheMac3_refGene = derive2 { name="TxDb.Mmulatta.UCSC.rheMac3.refGene"; version="3.4.3"; sha256="0g14rkxk44bzrhgl5xyfdb8lpq7m5iv95yk92inljz02qxinp9j4"; depends=[AnnotationDbi GenomicFeatures]; }; - TxDb_Mmulatta_UCSC_rheMac8_refGene = derive2 { name="TxDb.Mmulatta.UCSC.rheMac8.refGene"; version="3.4.3"; sha256="16cmwrij91hj10q3alcxpv0qrfah25z5x23m7lmzrgchsjd84rmw"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Mmulatta_UCSC_rheMac3_refGene = derive2 { name="TxDb.Mmulatta.UCSC.rheMac3.refGene"; version="3.4.4"; sha256="13nv7l71piwf0frnwplwbac82ad7vxbw31yrfnqvnd1knh7ns99x"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Mmulatta_UCSC_rheMac8_refGene = derive2 { name="TxDb.Mmulatta.UCSC.rheMac8.refGene"; version="3.4.4"; sha256="1qgm66hnhqb3jyal8s43yri96k1xwb3vamb83894n86bh2g6nlca"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Mmusculus_UCSC_mm10_ensGene = derive2 { name="TxDb.Mmusculus.UCSC.mm10.ensGene"; version="3.4.0"; sha256="0saxi1fdiwd38sfvy1rynd3v44rbp158jv6sjqcivvaqnd84zg9s"; depends=[AnnotationDbi GenomicFeatures]; }; - TxDb_Mmusculus_UCSC_mm10_knownGene = derive2 { name="TxDb.Mmusculus.UCSC.mm10.knownGene"; version="3.4.0"; sha256="08gava9wsvpcqz51k2sni3pj03n5155v32d9riqbf305nbirqbkb"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Mmusculus_UCSC_mm10_knownGene = derive2 { name="TxDb.Mmusculus.UCSC.mm10.knownGene"; version="3.4.4"; sha256="01lgxc1fx5nhlpbwjd5zqghkkbmh6axd98ikx4b0spv0jdg6gf39"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Mmusculus_UCSC_mm9_knownGene = derive2 { name="TxDb.Mmusculus.UCSC.mm9.knownGene"; version="3.2.2"; sha256="16bjxy00363hf91ik2mqlqls86i07gia72qh92xc3l1ncch61mx2"; depends=[AnnotationDbi GenomicFeatures]; }; - TxDb_Ptroglodytes_UCSC_panTro4_refGene = derive2 { name="TxDb.Ptroglodytes.UCSC.panTro4.refGene"; version="3.4.3"; sha256="0yi7lxvf6aq634nhdpyg0hxj8hab93fs9z8iw6janasb2b5any14"; depends=[AnnotationDbi GenomicFeatures]; }; - TxDb_Ptroglodytes_UCSC_panTro5_refGene = derive2 { name="TxDb.Ptroglodytes.UCSC.panTro5.refGene"; version="3.4.3"; sha256="1ra1kjmqza1y6i018j8q46s4qa5hxnk1w2a0szip9sckxbj8xlab"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Ptroglodytes_UCSC_panTro4_refGene = derive2 { name="TxDb.Ptroglodytes.UCSC.panTro4.refGene"; version="3.4.4"; sha256="12fdcs4vv4l0d3sksdq76nwwj88f8psiy84rd1jhfw8kbxqrhh8y"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Ptroglodytes_UCSC_panTro5_refGene = derive2 { name="TxDb.Ptroglodytes.UCSC.panTro5.refGene"; version="3.4.4"; sha256="00mirzp38iqm0l0py1a7mlslnbmkfzzk1krcg6jdyr8gan2sskpi"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Rnorvegicus_BioMart_igis = derive2 { name="TxDb.Rnorvegicus.BioMart.igis"; version="2.3.2"; sha256="1099vkk8g3lxbgjxsm1p1m3mjj08nsw282mqxgzpnrxf7m6jll76"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Rnorvegicus_UCSC_rn4_ensGene = derive2 { name="TxDb.Rnorvegicus.UCSC.rn4.ensGene"; version="3.2.2"; sha256="0gv8bynfxxa471ap069mjvfrb1d7a0c4w5k8hxkr4hnsm44mschm"; depends=[AnnotationDbi GenomicFeatures]; }; - TxDb_Rnorvegicus_UCSC_rn5_refGene = derive2 { name="TxDb.Rnorvegicus.UCSC.rn5.refGene"; version="3.4.3"; sha256="0jpkg9s3ghb61xn3i8x50h7wa0x2ixhzj09n6qk1y661ary5kac2"; depends=[AnnotationDbi GenomicFeatures]; }; - TxDb_Rnorvegicus_UCSC_rn6_refGene = derive2 { name="TxDb.Rnorvegicus.UCSC.rn6.refGene"; version="3.4.3"; sha256="15h2fgxjn92xfyj5yvm460ap7j6ayhkm6i5fgvqyhvgyarmss9a3"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Rnorvegicus_UCSC_rn5_refGene = derive2 { name="TxDb.Rnorvegicus.UCSC.rn5.refGene"; version="3.4.4"; sha256="1h9vmsp8lcr8yyvd1mjm81p8l660bjsx2kyhg3wm96izxgd4i7gn"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Rnorvegicus_UCSC_rn6_refGene = derive2 { name="TxDb.Rnorvegicus.UCSC.rn6.refGene"; version="3.4.4"; sha256="1k4g78kh52ppr4fd5z4bwzzgw8jg6j3zi129fnny4ks6zkadhlw6"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Scerevisiae_UCSC_sacCer2_sgdGene = derive2 { name="TxDb.Scerevisiae.UCSC.sacCer2.sgdGene"; version="3.2.2"; sha256="0l5gcwhbvzx60p9hjhd31angamb0hkgdg2avga7341j77rd5pwza"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Scerevisiae_UCSC_sacCer3_sgdGene = derive2 { name="TxDb.Scerevisiae.UCSC.sacCer3.sgdGene"; version="3.2.2"; sha256="1sjwl7fb3l3zxxbk8gkvzxwdsind0xjj7kmh7dachm6fi17hpb3d"; depends=[AnnotationDbi GenomicFeatures]; }; - TxDb_Sscrofa_UCSC_susScr11_refGene = derive2 { name="TxDb.Sscrofa.UCSC.susScr11.refGene"; version="3.4.3"; sha256="1lwr8yza22q2wqxdbcg37rn3aml5m96hp2m6rkxvs3g08q7wngis"; depends=[AnnotationDbi GenomicFeatures]; }; - TxDb_Sscrofa_UCSC_susScr3_refGene = derive2 { name="TxDb.Sscrofa.UCSC.susScr3.refGene"; version="3.4.3"; sha256="0agd0vn7fb658srqkr3gzk2y8x86xrcsn4hxbyfp2jhiypx60zzx"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Sscrofa_UCSC_susScr11_refGene = derive2 { name="TxDb.Sscrofa.UCSC.susScr11.refGene"; version="3.4.4"; sha256="1c6kbkp6iq6zzpg6wpnbgclp1vsdhh19g220va8b61jhgcccr2c6"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Sscrofa_UCSC_susScr3_refGene = derive2 { name="TxDb.Sscrofa.UCSC.susScr3.refGene"; version="3.4.4"; sha256="1yvjwsq9cn9kyjir53n20fbi8nyf1m64zim18w5mv05w9rn86gdl"; depends=[AnnotationDbi GenomicFeatures]; }; XtraSNPlocs_Hsapiens_dbSNP141_GRCh38 = derive2 { name="XtraSNPlocs.Hsapiens.dbSNP141.GRCh38"; version="0.99.12"; sha256="0a27y0ngg760y5wwcja4dpd7cjd8h5zg1s2b3a1r54s21k65zny3"; depends=[BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; XtraSNPlocs_Hsapiens_dbSNP144_GRCh37 = derive2 { name="XtraSNPlocs.Hsapiens.dbSNP144.GRCh37"; version="0.99.12"; sha256="0k823fvqjmdkmd47m7wyra6jxmv8lnk2i1xl4pp0mh3zgb87hgfb"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; XtraSNPlocs_Hsapiens_dbSNP144_GRCh38 = derive2 { name="XtraSNPlocs.Hsapiens.dbSNP144.GRCh38"; version="0.99.12"; sha256="0d4q32ij2x4726wvw06sgmivid0n94vfdmszdyh607xlcahqxa5z"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; @@ -298,22 +320,22 @@ in with self; { agprobe = derive2 { name="agprobe"; version="2.18.0"; sha256="1vnawamcpz16na8nmlq2czfxcr325fwdnngxl65mmnbd0f4lmy3k"; depends=[AnnotationDbi]; }; alternativeSplicingEvents_hg19 = derive2 { name="alternativeSplicingEvents.hg19"; version="1.0.1"; sha256="1v714abdpzhwa450zr66s1yjpxl6lkwi3wjbwn8phn87cgf8rj7q"; depends=[AnnotationHub]; }; alternativeSplicingEvents_hg38 = derive2 { name="alternativeSplicingEvents.hg38"; version="1.0.1"; sha256="0im87mrh1n6kv84q6lm4y15lb93rih88zdpa0jms5az91lyvsf25"; depends=[AnnotationHub]; }; - anopheles_db0 = derive2 { name="anopheles.db0"; version="3.6.0"; sha256="04dgk9q3hsrh4fncf9w4hx8l7qjwcbhbh1cnnfny5y7cpfliib6m"; depends=[AnnotationDbi]; }; - arabidopsis_db0 = derive2 { name="arabidopsis.db0"; version="3.6.0"; sha256="10xvx3vfj10xcx4w6jvm2c09p6diqjwaspgvwl5lvcm1xxaghsmf"; depends=[AnnotationDbi]; }; + anopheles_db0 = derive2 { name="anopheles.db0"; version="3.7.1"; sha256="0f940ybh7kr30d9pkqhr0w2yrwsqa25yxbhzhlccn4a6a6svzcwb"; depends=[AnnotationDbi]; }; + arabidopsis_db0 = derive2 { name="arabidopsis.db0"; version="3.7.1"; sha256="1d7cnhbm44dv0g6mjv76sdr8dgni34fbffzkk95rqikdqag8s9cy"; depends=[AnnotationDbi]; }; ath1121501_db = derive2 { name="ath1121501.db"; version="3.2.3"; sha256="1zrf26cfhlmrb5pyfawwk4v8l1mflx8c43zsxrwkbmxzc1jnc7dv"; depends=[AnnotationDbi org_At_tair_db]; }; ath1121501cdf = derive2 { name="ath1121501cdf"; version="2.18.0"; sha256="1naq8f8dwgbmndx178nm2pw6hjx5ljx0w1wb4dfjifnl4bs5rqcc"; depends=[AnnotationDbi]; }; ath1121501probe = derive2 { name="ath1121501probe"; version="2.18.0"; sha256="0a2nd8zhp3ybis780l3rrmwcxskbl3a111g8w6m8qfwsw5vnlqg1"; depends=[AnnotationDbi]; }; barley1cdf = derive2 { name="barley1cdf"; version="2.18.0"; sha256="0rbij5cqr2sz33y5waybv85nrcgf70iwj5gk13g0xn9p1l1zxyn2"; depends=[AnnotationDbi]; }; barley1probe = derive2 { name="barley1probe"; version="2.18.0"; sha256="1kh5r748b4vkmvlfaclmrh07ypbrzgxn90liqfz1rwkabh6rfk71"; depends=[AnnotationDbi]; }; bovine_db = derive2 { name="bovine.db"; version="3.2.3"; sha256="1i8mgk60hlmvngb4c727wajix9mca9gfg0pzxrnfcjwi87rpw7fy"; depends=[AnnotationDbi org_Bt_eg_db]; }; - bovine_db0 = derive2 { name="bovine.db0"; version="3.6.0"; sha256="0183qqj03r2wd6s527403zyd9r0jd0yapffp9881xsd3pcn2n310"; depends=[AnnotationDbi]; }; + bovine_db0 = derive2 { name="bovine.db0"; version="3.7.1"; sha256="17q8hkfips8znwnkk062m8xsvcpaf6ynpf2jjszrcm02495vbw45"; depends=[AnnotationDbi]; }; bovinecdf = derive2 { name="bovinecdf"; version="2.18.0"; sha256="13mf0yy0dypkm5n2ghl04xm6ayb9bn9qijqhgynksghi7s2k34mb"; depends=[AnnotationDbi]; }; bovineprobe = derive2 { name="bovineprobe"; version="2.18.0"; sha256="0i4afa5dksnir2nfrfh2cynjm59sm6vfaqa9wyag8cxg7c2nlm1i"; depends=[AnnotationDbi]; }; bsubtiliscdf = derive2 { name="bsubtiliscdf"; version="2.18.0"; sha256="1rihrjim37b49rhqr4nxga8sp67qri9xqlqc141mhbngh6cw3iyl"; depends=[AnnotationDbi]; }; bsubtilisprobe = derive2 { name="bsubtilisprobe"; version="2.18.0"; sha256="0k99hvgaswn96x4yanvr9cy8bdy69sd5q7yp6dj9synxj7s1fcw9"; depends=[AnnotationDbi]; }; cMAP = derive2 { name="cMAP"; version="1.15.1"; sha256="0pzizm27rgcaic7wsh52z30v1jwarmz4cwh1mksbygp63k54mwiv"; depends=[]; }; canine_db = derive2 { name="canine.db"; version="3.2.3"; sha256="0wbyzhk827l49yxzimvznx9z6yag5nd4djm2hddysf5nk1ndapqs"; depends=[AnnotationDbi org_Cf_eg_db]; }; - canine_db0 = derive2 { name="canine.db0"; version="3.6.0"; sha256="1cn3s23h8g3a0h0i97v33qh6yz94bw9i8kzd6xwvgwkj0yinw1ib"; depends=[AnnotationDbi]; }; + canine_db0 = derive2 { name="canine.db0"; version="3.7.1"; sha256="1z691m0ap7x5sb7pbxlk8cs5s6hwvgvdbjjdxlfp8vilciwrsgwn"; depends=[AnnotationDbi]; }; canine2_db = derive2 { name="canine2.db"; version="3.2.3"; sha256="1gzd2x23dkfiwnwqz9pdn5lp4l8aby525mhscn3xakw633si4dvz"; depends=[AnnotationDbi org_Cf_eg_db]; }; canine2cdf = derive2 { name="canine2cdf"; version="2.18.0"; sha256="077cmmnhjdk0vxjzm1kqf3q5kgx6chwkm59dr4s5dy019rqb6sqr"; depends=[AnnotationDbi]; }; canine2probe = derive2 { name="canine2probe"; version="2.18.0"; sha256="1l849a1dqy4kpcsxs0lvb48ag81i0f0ys0w4757rw4kp8ry59z4b"; depends=[AnnotationDbi]; }; @@ -323,10 +345,10 @@ in with self; { celeganscdf = derive2 { name="celeganscdf"; version="2.18.0"; sha256="0a6w0a48azg0i21j3aqb7fnxck3ff9w3gsi89bnlfh0zx6pknx7p"; depends=[AnnotationDbi]; }; celegansprobe = derive2 { name="celegansprobe"; version="2.18.0"; sha256="05k7si3f8pzkyb8jv0r2vkavbrqxsn4nawl92gcphfsylrwcddqb"; depends=[AnnotationDbi]; }; chicken_db = derive2 { name="chicken.db"; version="3.2.3"; sha256="1rq9afkpcpv8qi75shvnsw8di3ycai4ylv7jq9zwj51zlwlw9cpq"; depends=[AnnotationDbi org_Gg_eg_db]; }; - chicken_db0 = derive2 { name="chicken.db0"; version="3.6.0"; sha256="1rkqdlnimxnvb8lwlw11w6iwsn42g11nbihj0v78rx9m0n7s6ik1"; depends=[AnnotationDbi]; }; + chicken_db0 = derive2 { name="chicken.db0"; version="3.7.1"; sha256="0jib8pamnqzppk2x1i8c7szrwvhhilsxbk2x83ajzbzk3df3rvnd"; depends=[AnnotationDbi]; }; chickencdf = derive2 { name="chickencdf"; version="2.18.0"; sha256="09hhim5s9xj7n2b5rhn1svf5qly2mn0rr2v2ls25hfzyrqcbxlz1"; depends=[AnnotationDbi]; }; chickenprobe = derive2 { name="chickenprobe"; version="2.18.0"; sha256="1fdsiwfyg7fwslrr7xs3gny7sw24bzg5k1fvlyzb1477sgj0pid3"; depends=[AnnotationDbi]; }; - chimp_db0 = derive2 { name="chimp.db0"; version="3.6.0"; sha256="121hzz3s816xhbv6rh87i9qas02j2k89cb6my22n9jhyf74r7nfi"; depends=[AnnotationDbi]; }; + chimp_db0 = derive2 { name="chimp.db0"; version="3.7.1"; sha256="0bgn2yjj1jg0dswn5m4n78lydlzz7qb8fxpm8pl7909xrkcd1lpw"; depends=[AnnotationDbi]; }; citruscdf = derive2 { name="citruscdf"; version="2.18.0"; sha256="1326mj1xf3k4v5iyyn46whx24qfng0x3cv6rvckdr1ycc1v887dn"; depends=[AnnotationDbi]; }; citrusprobe = derive2 { name="citrusprobe"; version="2.18.0"; sha256="0bf1wic136cxwgs4j13wsyqasnyvr0jw1hzg6qizndmy7g8hrb87"; depends=[AnnotationDbi]; }; clariomdhumanprobeset_db = derive2 { name="clariomdhumanprobeset.db"; version="8.7.0"; sha256="039bsywnim0nr8b3w6vkj4m20j0pggnm6ajjz24bnlikm9zzrs6l"; depends=[AnnotationDbi org_Hs_eg_db]; }; @@ -349,14 +371,14 @@ in with self; { ecoli2_db = derive2 { name="ecoli2.db"; version="3.2.3"; sha256="07vc5fl2zq2f65ndcldyzvwfpl65snp6ygvw658j4036lbb7cpjl"; depends=[AnnotationDbi org_EcK12_eg_db]; }; ecoli2cdf = derive2 { name="ecoli2cdf"; version="2.18.0"; sha256="1rkxrwadq9kg9685z9pg6rgc4bblkx5p3c6snsl4gv2k188dva9r"; depends=[AnnotationDbi]; }; ecoli2probe = derive2 { name="ecoli2probe"; version="2.18.0"; sha256="11q4ka0ncjapahic49xdl9919vm9frrwlqgj101krgkg262lfm8n"; depends=[AnnotationDbi]; }; - ecoliK12_db0 = derive2 { name="ecoliK12.db0"; version="3.6.0"; sha256="0l64cb1zqhz9wbm4chbapv9mzm9k0h9v7xzga3syydalzaqlln5l"; depends=[AnnotationDbi]; }; - ecoliSakai_db0 = derive2 { name="ecoliSakai.db0"; version="3.6.0"; sha256="129w24f8k7kg7h99jh6jgrvriy1avblz20dk13linhf9bk466vaw"; depends=[AnnotationDbi]; }; + ecoliK12_db0 = derive2 { name="ecoliK12.db0"; version="3.7.1"; sha256="075ngixclxh1qqgn5p1afxyx8610rfxj1ax3iqmbvqqlyq9nc9ar"; depends=[AnnotationDbi]; }; + ecoliSakai_db0 = derive2 { name="ecoliSakai.db0"; version="3.7.1"; sha256="1p3lvf92l44kqn47jhgwd6nqnjl0ksnvmsj1052lrbalh5xl3rcd"; depends=[AnnotationDbi]; }; ecoliasv2cdf = derive2 { name="ecoliasv2cdf"; version="2.18.0"; sha256="16i6has9qgmzakcy24racc1h9j331wndv5c87qp5r1zrai61zyav"; depends=[AnnotationDbi]; }; ecoliasv2probe = derive2 { name="ecoliasv2probe"; version="2.18.0"; sha256="1hfrnal170cdigc2fmnynb75jjsiq77p4x6ws9gah558hvx87nk3"; depends=[AnnotationDbi]; }; ecolicdf = derive2 { name="ecolicdf"; version="2.18.0"; sha256="18g5prjykn356k35m131ifn128k5mhij2x26balqav0azigzjqsn"; depends=[AnnotationDbi]; }; ecoliprobe = derive2 { name="ecoliprobe"; version="2.18.0"; sha256="17g5zxfzsak7a0w51irc0w1w2i5ngdkx9db6rhv1fyp8mfjgaphd"; depends=[AnnotationDbi]; }; fitCons_UCSC_hg19 = derive2 { name="fitCons.UCSC.hg19"; version="3.7.1"; sha256="19isa4x8js0pdb4k8a11bw3bzmzv6jc4jphzrvav7piqkvrgykzx"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; - fly_db0 = derive2 { name="fly.db0"; version="3.6.0"; sha256="15kwa0yl7n0nc579xi3il7yyk4dpijsls34gyd17v8mi4v1a1kwm"; depends=[AnnotationDbi]; }; + fly_db0 = derive2 { name="fly.db0"; version="3.7.1"; sha256="0l617pksrcgb96bm25qsxlyjz7jp7hqk1sfba516l2gd2rvbp7rs"; depends=[AnnotationDbi]; }; geneplast_data_string_v91 = derive2 { name="geneplast.data.string.v91"; version="0.99.6"; sha256="0mc26d0sgmpmfmqsqinqv5k6vhg0hlc8hsjkcnvf369yav224nq1"; depends=[]; }; genomewidesnp5Crlmm = derive2 { name="genomewidesnp5Crlmm"; version="1.0.6"; sha256="06dmwnjy3gb53y6nr02dmp22qzfl5d63wppazrabcqbzwimhnvp8"; depends=[]; }; genomewidesnp6Crlmm = derive2 { name="genomewidesnp6Crlmm"; version="1.0.7"; sha256="16qcxa32fmbdcv5dck0grsnqyfcqql7wpxa1l6andv9hrvabv2jx"; depends=[]; }; @@ -487,7 +509,7 @@ in with self; { hugene20sttranscriptcluster_db = derive2 { name="hugene20sttranscriptcluster.db"; version="8.7.0"; sha256="0ba3yvizj9ya61rr9ik2hdxhy0q67908x16n58jjjfq8wf96h7sp"; depends=[AnnotationDbi org_Hs_eg_db]; }; hugene21stprobeset_db = derive2 { name="hugene21stprobeset.db"; version="8.7.0"; sha256="0chkxxpfl696qqiai3i30ylpsihyicbs0hbcni6nmnhfz9k5800g"; depends=[AnnotationDbi org_Hs_eg_db]; }; hugene21sttranscriptcluster_db = derive2 { name="hugene21sttranscriptcluster.db"; version="8.7.0"; sha256="0wk2lg74zkgxh6frmikhk4bxndiyvc1j7mhvz65w8fxfqiwfyf5i"; depends=[AnnotationDbi org_Hs_eg_db]; }; - human_db0 = derive2 { name="human.db0"; version="3.6.0"; sha256="050cwz99yz27gyrnfhkv474vqz5rfqbv2f7wdjnaphd9xxq8xjr4"; depends=[AnnotationDbi]; }; + human_db0 = derive2 { name="human.db0"; version="3.7.1"; sha256="1vikw70n828prccs1vlnw3f4rwp5lsp5cb02f56hih4n3mapky9f"; depends=[AnnotationDbi]; }; human1mduov3bCrlmm = derive2 { name="human1mduov3bCrlmm"; version="1.0.4"; sha256="1p7qpzk6svafgdafljhh4k0z7pcs78qmwwfd80r0a1yhkssmp0v9"; depends=[]; }; human1mv1cCrlmm = derive2 { name="human1mv1cCrlmm"; version="1.0.3"; sha256="1qlph3qrjv52ddzlj8pwa93zzh70x4mbdrdr7q9pan427lpck9gx"; depends=[]; }; human370quadv3cCrlmm = derive2 { name="human370quadv3cCrlmm"; version="1.0.3"; sha256="1chjx9vsmqz2whslw1l7jn7nfn7zx6pcjfmqqm9mh81i74rzrdik"; depends=[]; }; @@ -525,7 +547,7 @@ in with self; { m20kcod_db = derive2 { name="m20kcod.db"; version="3.4.0"; sha256="1p2sm5j4b50iqzwcb984qrh74c3hf6yml7b8mvxlhhhvxz4iy1np"; depends=[AnnotationDbi org_Mm_eg_db]; }; maizecdf = derive2 { name="maizecdf"; version="2.18.0"; sha256="0yfz5gjhsq4wz6j63s1b1hxjz03gsmrlfs2cdc8smq6azp3zdid4"; depends=[AnnotationDbi]; }; maizeprobe = derive2 { name="maizeprobe"; version="2.18.0"; sha256="01h5dv5i0zaqlphkii9ipxy9wswv1srgprrpr5vmi01c9d98qsk0"; depends=[AnnotationDbi]; }; - malaria_db0 = derive2 { name="malaria.db0"; version="3.6.0"; sha256="0874knxhybbi6idfb9rig3dhwb65xr7imkgqg1yl3scikyvpn37m"; depends=[AnnotationDbi]; }; + malaria_db0 = derive2 { name="malaria.db0"; version="3.7.1"; sha256="1ljk5xfshp96pibw9k1yb5cl664iashb9rhc1y1bjalyidraznk7"; depends=[AnnotationDbi]; }; medicagocdf = derive2 { name="medicagocdf"; version="2.18.0"; sha256="1clz679cc887x98c6jk93cphijkbg5r2nd9idrj5901yvh6p9n5q"; depends=[AnnotationDbi]; }; medicagoprobe = derive2 { name="medicagoprobe"; version="2.18.0"; sha256="0w6j1pfkvb3npc8srpjifq2ywnqxhc9q090jqzmkx22x36cw9cl5"; depends=[AnnotationDbi]; }; mgu74a_db = derive2 { name="mgu74a.db"; version="3.2.3"; sha256="0xd2gbvry061409kiwq99i13641g8x6m9kbgg4yr0x6m9dh7hxa8"; depends=[AnnotationDbi org_Mm_eg_db]; }; @@ -579,7 +601,7 @@ in with self; { mogene20sttranscriptcluster_db = derive2 { name="mogene20sttranscriptcluster.db"; version="8.7.0"; sha256="1s7cdjglrc9qqf3gsmhsyycfa0h5qrbk28i4z3z4mb9g6242r1r4"; depends=[AnnotationDbi org_Mm_eg_db]; }; mogene21stprobeset_db = derive2 { name="mogene21stprobeset.db"; version="8.7.0"; sha256="0l8y2zbhykzqs9hbjhj1cys1mzdjhmi4rjv4l3v0sv5969h6sl96"; depends=[AnnotationDbi org_Mm_eg_db]; }; mogene21sttranscriptcluster_db = derive2 { name="mogene21sttranscriptcluster.db"; version="8.7.0"; sha256="1mkw3997mqr7ssa60zpwhlyajda51smcrnlnxwif78g99yj0nrxb"; depends=[AnnotationDbi org_Mm_eg_db]; }; - mouse_db0 = derive2 { name="mouse.db0"; version="3.6.0"; sha256="0dxx2853blbsbxn65md4zlp59pdqj7wraiq39spxlbkail76yggp"; depends=[AnnotationDbi]; }; + mouse_db0 = derive2 { name="mouse.db0"; version="3.7.1"; sha256="1fyawqxf1m6cnl6p41q1bqb75k59n8ixn3kw8gf4kq34cldl0h9k"; depends=[AnnotationDbi]; }; mouse4302_db = derive2 { name="mouse4302.db"; version="3.2.3"; sha256="1wdgqawqzkr39xwl32cap4ksr59p7r7i83g82h1ss4q3lm58gxpm"; depends=[AnnotationDbi org_Mm_eg_db]; }; mouse4302cdf = derive2 { name="mouse4302cdf"; version="2.18.0"; sha256="1mpyma4x8zfs2fmmx57xw4cfs2cf9lhw71nc3icl72d7vmwidswc"; depends=[AnnotationDbi]; }; mouse4302frmavecs = derive2 { name="mouse4302frmavecs"; version="1.5.0"; sha256="04clwkfz1gqqwrnqbavkka3hv480w6vi6c4q947qqnhw8j5jjp7s"; depends=[]; }; @@ -616,25 +638,25 @@ in with self; { nugomm1a520177cdf = derive2 { name="nugomm1a520177cdf"; version="3.4.0"; sha256="0skd5b76si0vydzk5qhg4f1a1j655alxflm9sqci8fi8safwj96a"; depends=[AnnotationDbi]; }; nugomm1a520177probe = derive2 { name="nugomm1a520177probe"; version="3.4.0"; sha256="1n70k0mhv146983myjgk1cgkr9rmmcpqdv8wpkcr320qcvgf9bn7"; depends=[AnnotationDbi]; }; oligoData = derive2 { name="oligoData"; version="1.8.0"; sha256="1d1yfms3jv2c4s255xnh8yxwijrj35skw3nxds7l46y88lg3qn8y"; depends=[oligo]; }; - org_Ag_eg_db = derive2 { name="org.Ag.eg.db"; version="3.6.0"; sha256="1bqwvg6shkx9764yz8qzy08yhqjajhzgbjmk9cn3fxjipk9v523k"; depends=[AnnotationDbi]; }; - org_At_tair_db = derive2 { name="org.At.tair.db"; version="3.6.0"; sha256="0vfnfg0cn5iprrsyqn4gjsq9p5fz7imrl16v220497af9k9zg88b"; depends=[AnnotationDbi]; }; - org_Bt_eg_db = derive2 { name="org.Bt.eg.db"; version="3.6.0"; sha256="1lixfs1w5bnaxc9fyrvwgz9ldp4kxslgv7lm4icvcn517q3knsi4"; depends=[AnnotationDbi]; }; - org_Ce_eg_db = derive2 { name="org.Ce.eg.db"; version="3.6.0"; sha256="0jvmpm2yk4lr6cjdzqjq6dl4gjfgzb12v8xxws6a1gjbkwyirxd2"; depends=[AnnotationDbi]; }; - org_Cf_eg_db = derive2 { name="org.Cf.eg.db"; version="3.6.0"; sha256="1xzwi14l2ia5701rzfxl3qmf6nzdlg1a6k4p2q75fxw7c43nkp53"; depends=[AnnotationDbi]; }; - org_Dm_eg_db = derive2 { name="org.Dm.eg.db"; version="3.6.0"; sha256="0zljw8f7b1c1xlb0rpb3m9p1dj63q7m4ai5dp5qm26wjlhqyk0zx"; depends=[AnnotationDbi]; }; - org_Dr_eg_db = derive2 { name="org.Dr.eg.db"; version="3.6.0"; sha256="0hj1zxgxxn7ljl1apmlnf2niyb5gjqjv8y0mb8961y8b2iq7wflf"; depends=[AnnotationDbi]; }; - org_EcK12_eg_db = derive2 { name="org.EcK12.eg.db"; version="3.6.0"; sha256="0pqxbnry2k621szw7zpfg6yn1m3icz3l7l80xh5q4gc2vqri59i8"; depends=[AnnotationDbi]; }; - org_EcSakai_eg_db = derive2 { name="org.EcSakai.eg.db"; version="3.6.0"; sha256="04gscsr3mrqdprn8jc2ns1mf3h9nm19zh68fayjf0kb1j91k8hdd"; depends=[AnnotationDbi]; }; - org_Gg_eg_db = derive2 { name="org.Gg.eg.db"; version="3.6.0"; sha256="0jm7k4l8bxrbkhhn1bbc0l9622mszk6c2galrgc3bc091frz1w56"; depends=[AnnotationDbi]; }; - org_Hs_eg_db = derive2 { name="org.Hs.eg.db"; version="3.6.0"; sha256="0jav4c8av85380lbra41m33ymqy0kx4czni0kn3cpsa3sfk3ij17"; depends=[AnnotationDbi]; }; - org_Mm_eg_db = derive2 { name="org.Mm.eg.db"; version="3.6.0"; sha256="0l54hi68y6j5jjk88rgy7jhdcjbz6pg474kbpcj6x9z77i0mcfgr"; depends=[AnnotationDbi]; }; - org_Mmu_eg_db = derive2 { name="org.Mmu.eg.db"; version="3.6.0"; sha256="1y60cvnw5a7nnxryyw97fzrpsic4napsidhrd61qpp6nkbc3aa73"; depends=[AnnotationDbi]; }; - org_Pf_plasmo_db = derive2 { name="org.Pf.plasmo.db"; version="3.6.0"; sha256="08kfwsyi0bbmkfqyjgj4m04dmav9nzx6kskaw90ayrj2jv70ci77"; depends=[AnnotationDbi]; }; - org_Pt_eg_db = derive2 { name="org.Pt.eg.db"; version="3.6.0"; sha256="198w077sifyzsrx2vcb8vbrlk6ln6q74lrgkh81sbwshik7nmy4f"; depends=[AnnotationDbi]; }; - org_Rn_eg_db = derive2 { name="org.Rn.eg.db"; version="3.6.0"; sha256="0v2qx1hghlwsgf4lzax6wf3snc17ll4rrhq6za1cf1a0bgvjf28f"; depends=[AnnotationDbi]; }; - org_Sc_sgd_db = derive2 { name="org.Sc.sgd.db"; version="3.6.0"; sha256="0pprpk91j95ycr7hnd6a1n0aflbn3ibaizl2n2gsfwyjs2vyzq52"; depends=[AnnotationDbi]; }; - org_Ss_eg_db = derive2 { name="org.Ss.eg.db"; version="3.6.0"; sha256="02mldrxqmfwlf4fjlc6i9qv786zgr9cggwrfpkn5inj28hh6s29j"; depends=[AnnotationDbi]; }; - org_Xl_eg_db = derive2 { name="org.Xl.eg.db"; version="3.6.0"; sha256="0p76dj2l9r1rsxq0yh9fsqp22z7jg7i9sq43v5kc32pfgn4nizas"; depends=[AnnotationDbi]; }; + org_Ag_eg_db = derive2 { name="org.Ag.eg.db"; version="3.7.0"; sha256="101xvx62y1y2kbiv9j427879zhjindm1hzb9iscinmf10lwhyj8q"; depends=[AnnotationDbi]; }; + org_At_tair_db = derive2 { name="org.At.tair.db"; version="3.7.0"; sha256="0i5dv4lc8dh27ipf37wk84y75fmnbja0bbllzbchb459c9bpwcf9"; depends=[AnnotationDbi]; }; + org_Bt_eg_db = derive2 { name="org.Bt.eg.db"; version="3.7.0"; sha256="0vdfgh2yrawz8bbszgxl5vvq6iqvn25p5l01j7zhlmx035jcbfak"; depends=[AnnotationDbi]; }; + org_Ce_eg_db = derive2 { name="org.Ce.eg.db"; version="3.7.0"; sha256="1w5br1ss4ha8wv4v2saj7cmbjc2jw0dyj2f2y269l078z31wcnaz"; depends=[AnnotationDbi]; }; + org_Cf_eg_db = derive2 { name="org.Cf.eg.db"; version="3.7.0"; sha256="1y3kda375f327bv31cfp470546hvcdw5a8bl3z5h1dm6c556z7cl"; depends=[AnnotationDbi]; }; + org_Dm_eg_db = derive2 { name="org.Dm.eg.db"; version="3.7.0"; sha256="1pqjrzlyg72bjpy8zsxvaglc7jsv176bnyi87xdajmkvsgxpm7b3"; depends=[AnnotationDbi]; }; + org_Dr_eg_db = derive2 { name="org.Dr.eg.db"; version="3.7.0"; sha256="1xs5wsbcpy0iwbjyiv7fax57djqc529ai5fk1qfsdcvlja3cpglx"; depends=[AnnotationDbi]; }; + org_EcK12_eg_db = derive2 { name="org.EcK12.eg.db"; version="3.7.0"; sha256="0ii3k9b0rr6bkb16m108if9liinw7md4mgh8fz4yd4gh8a7zcli7"; depends=[AnnotationDbi]; }; + org_EcSakai_eg_db = derive2 { name="org.EcSakai.eg.db"; version="3.7.0"; sha256="1zcqbr4sds24mcggg71g4j6v0wp7fri75d1l0bhp0x245b9k5vnw"; depends=[AnnotationDbi]; }; + org_Gg_eg_db = derive2 { name="org.Gg.eg.db"; version="3.7.0"; sha256="0lyzznrnyyw9lsdp58a0sc5jw2lrccsv44dvrza2ix8mx46gplis"; depends=[AnnotationDbi]; }; + org_Hs_eg_db = derive2 { name="org.Hs.eg.db"; version="3.7.0"; sha256="1qxz9l80yg3qdqszs6dsscp7lrpfi1bgd0pxh9j7q34vprzwhdim"; depends=[AnnotationDbi]; }; + org_Mm_eg_db = derive2 { name="org.Mm.eg.db"; version="3.7.0"; sha256="1i3nvrd3wjigf1rmgxq1p5xxc3p8v02h5gwi62s30rkrsyjjfjxx"; depends=[AnnotationDbi]; }; + org_Mmu_eg_db = derive2 { name="org.Mmu.eg.db"; version="3.7.0"; sha256="1c6mwknyf8cq824qm3cax0a2l3wd2h9dw6pylhwm0x7viz2xf2iz"; depends=[AnnotationDbi]; }; + org_Pf_plasmo_db = derive2 { name="org.Pf.plasmo.db"; version="3.7.0"; sha256="0s3ibaqvjw3sg1j22pfgzw1gcb9pv9b8a4livj9ph73jqhx03r5i"; depends=[AnnotationDbi]; }; + org_Pt_eg_db = derive2 { name="org.Pt.eg.db"; version="3.7.0"; sha256="1n9qd34gjkjgbbz07h6ibzgbq9id81z6ni01vmaki3554gmfk3dl"; depends=[AnnotationDbi]; }; + org_Rn_eg_db = derive2 { name="org.Rn.eg.db"; version="3.7.0"; sha256="10293py12jar1ab3s1b872c5gxpw9d2d5sxk4iq5g38i0gcf5gsc"; depends=[AnnotationDbi]; }; + org_Sc_sgd_db = derive2 { name="org.Sc.sgd.db"; version="3.7.0"; sha256="0dwaw9v4c1d5wr6skaf97s013wqwqm31bybhggm1fm59aa6mkdwv"; depends=[AnnotationDbi]; }; + org_Ss_eg_db = derive2 { name="org.Ss.eg.db"; version="3.7.0"; sha256="1s5zizma3ba00z8q1k9h4fajxwj3f2jg1034rfwqlhsscwrhv5ih"; depends=[AnnotationDbi]; }; + org_Xl_eg_db = derive2 { name="org.Xl.eg.db"; version="3.7.0"; sha256="002i6aacrirvyzi14r26fgr6cqc0bfwn0wg83sbligp2dwqm0bb4"; depends=[AnnotationDbi]; }; paeg1acdf = derive2 { name="paeg1acdf"; version="2.18.0"; sha256="127pgxxp5wp3hgmafbzdzsk4gqnllq1m1gcsfyzkvpkvmbn4aa9n"; depends=[AnnotationDbi]; }; paeg1aprobe = derive2 { name="paeg1aprobe"; version="2.18.0"; sha256="0hbyd402wf9nzy2g93nhnf2zsi9jvhgfk0llxlyfk0kqxs0y4byy"; depends=[AnnotationDbi]; }; pd_081229_hg18_promoter_medip_hx1 = derive2 { name="pd.081229.hg18.promoter.medip.hx1"; version="0.99.4"; sha256="1h4925dmw0vfsnhllg55gswq3sxfmx9rcjzifdvgs9y27399psrr"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite]; }; @@ -811,7 +833,7 @@ in with self; { phastCons100way_UCSC_hg19 = derive2 { name="phastCons100way.UCSC.hg19"; version="3.7.2"; sha256="1jmc4k4zgkx5vr2plnidnd9bidlwlb0kr7mjg60cqjw7dq7jl1fa"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; phastCons100way_UCSC_hg38 = derive2 { name="phastCons100way.UCSC.hg38"; version="3.7.1"; sha256="0dka39rvx4d3wbcjypcgvc19s6cnxkkfywa4irv23kpibq1sjyv0"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; phastCons7way_UCSC_hg38 = derive2 { name="phastCons7way.UCSC.hg38"; version="3.7.1"; sha256="105isdrb3nsy30wd8yy9vrrv8b7c8izc11xqqixg6rcriacd0rl0"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; - pig_db0 = derive2 { name="pig.db0"; version="3.6.0"; sha256="0qiym7v0z6rr68191lj5hnkzdjc4k61cbjvzj59x5aygba6clm8y"; depends=[AnnotationDbi]; }; + pig_db0 = derive2 { name="pig.db0"; version="3.7.1"; sha256="06hwggby003y64mhrk4b48zxnh3csqi5hm9y42iccz17qs7j1jmi"; depends=[AnnotationDbi]; }; plasmodiumanophelescdf = derive2 { name="plasmodiumanophelescdf"; version="2.18.0"; sha256="1vs36091djinn3g6rjhmy9xfdyi58365zbcjc9mf50adnp2i5fq9"; depends=[AnnotationDbi]; }; plasmodiumanophelesprobe = derive2 { name="plasmodiumanophelesprobe"; version="2.18.0"; sha256="03hfq51nrpmx8ihc48jiih6bk99irrgal9x7i7mgcv8xd508gcsy"; depends=[AnnotationDbi]; }; poplarcdf = derive2 { name="poplarcdf"; version="2.18.0"; sha256="0j28czs936j2wgwp63qbwl1mjcflcrx7ir88jzxkkw7411ch1gl1"; depends=[AnnotationDbi]; }; @@ -840,14 +862,14 @@ in with self; { ragene20sttranscriptcluster_db = derive2 { name="ragene20sttranscriptcluster.db"; version="8.7.0"; sha256="135cgn92raa6f9yiw4k25rn04rpg5mdnf969l66x4s1jcc0rwscq"; depends=[AnnotationDbi org_Rn_eg_db]; }; ragene21stprobeset_db = derive2 { name="ragene21stprobeset.db"; version="8.7.0"; sha256="0lp4prymrm3cp8yq1hba9bylw22hcvlx7piqpvjx51hj79yrwdig"; depends=[AnnotationDbi org_Rn_eg_db]; }; ragene21sttranscriptcluster_db = derive2 { name="ragene21sttranscriptcluster.db"; version="8.7.0"; sha256="1b7s2r4w1yy2v3srs6n931zc64qf58nq4apmq2ag5nx50wspima1"; depends=[AnnotationDbi org_Rn_eg_db]; }; - rat_db0 = derive2 { name="rat.db0"; version="3.6.0"; sha256="1dxmdc4pvr3bl5vc6pw10ddqknxs5ggmr1zvmxgrk8girgkpja1h"; depends=[AnnotationDbi]; }; + rat_db0 = derive2 { name="rat.db0"; version="3.7.1"; sha256="1k7vx0iihb5sgaicrxbv33fi7kjwqfskbwn37aj769nqxq66fx8h"; depends=[AnnotationDbi]; }; rat2302_db = derive2 { name="rat2302.db"; version="3.2.3"; sha256="0vj4vkx091m34xqjh6gv6m2iqszvn5rq3kvnpyq3fin5v42wrsr1"; depends=[AnnotationDbi org_Rn_eg_db]; }; rat2302cdf = derive2 { name="rat2302cdf"; version="2.18.0"; sha256="1748rc6yypd7y8wgr1qg632pcsxx0fkxjz6b3z4fhblgdllhy9wk"; depends=[AnnotationDbi]; }; rat2302probe = derive2 { name="rat2302probe"; version="2.18.0"; sha256="1zwjgbcb9d4ib6z1iyjz8x11lq0b5gqs08y6j3idb5wf3i2p521v"; depends=[AnnotationDbi]; }; ratCHRLOC = derive2 { name="ratCHRLOC"; version="2.1.6"; sha256="0mgk6lwvvdwjzjh4r1q1q6nfnx4vqx9iy6gmbrb9f31jf30hqnsb"; depends=[]; }; rattoxfxcdf = derive2 { name="rattoxfxcdf"; version="2.18.0"; sha256="0q84lfaxnnj2zbm5q8xswa1md15fjj4i0djnqr835ixzn7px4yqn"; depends=[AnnotationDbi]; }; rattoxfxprobe = derive2 { name="rattoxfxprobe"; version="2.18.0"; sha256="1kp159553rkcn9yh6x3yph3yjz2ja21wi9j5ax03qnhwlsl1x8ik"; depends=[AnnotationDbi]; }; - reactome_db = derive2 { name="reactome.db"; version="1.64.0"; sha256="1wwgi5wr8ax0wns32zkz92wzh8ivq3q19m4pxvs8rrgwnlbyp81d"; depends=[AnnotationDbi]; }; + reactome_db = derive2 { name="reactome.db"; version="1.66.0"; sha256="18kh68sx9825bi92904xcygjh9jsbxyhsp4ghw1wh160na65gy3v"; depends=[AnnotationDbi]; }; rgu34a_db = derive2 { name="rgu34a.db"; version="3.2.3"; sha256="1s2sd5bqlj4qhamhrnb9byxn8nc7z265mqy7zzkgxcd6a2k472vp"; depends=[AnnotationDbi org_Rn_eg_db]; }; rgu34acdf = derive2 { name="rgu34acdf"; version="2.18.0"; sha256="08z9f16xp1m2mwl9vlmbffxl4zyyl8cgzf6wp66rrm32lvl0nbwq"; depends=[AnnotationDbi]; }; rgu34aprobe = derive2 { name="rgu34aprobe"; version="2.18.0"; sha256="1gjxyq9128jgv3ic386f84rajgf3wz7yi2dja80y0ff4m0a48dlh"; depends=[AnnotationDbi]; }; @@ -861,10 +883,11 @@ in with self; { rgug4105a_db = derive2 { name="rgug4105a.db"; version="3.2.3"; sha256="0lq8k95qm0q7j65nf16p3f09dn9zs87n3k561wxrgi2lb0pf6j40"; depends=[AnnotationDbi org_Rn_eg_db]; }; rgug4130a_db = derive2 { name="rgug4130a.db"; version="3.2.3"; sha256="0zlcn9spw23bj3px9z1l2f5afn09zbr6rv0nbd2h6dd12wrvy1zk"; depends=[AnnotationDbi org_Rn_eg_db]; }; rgug4131a_db = derive2 { name="rgug4131a.db"; version="3.2.3"; sha256="1r272jf9cflf1yf4bznp4d59h7bd7adh1i3rf890h5ffc0xzf5cq"; depends=[AnnotationDbi org_Rn_eg_db]; }; - rhesus_db0 = derive2 { name="rhesus.db0"; version="3.6.0"; sha256="1vlqd4qk0wph3vmd125dw9iipgljf2s3i46kr7bjswj0k9k4385h"; depends=[AnnotationDbi]; }; + rhesus_db0 = derive2 { name="rhesus.db0"; version="3.7.1"; sha256="1k695lwbwznk4i03dqpfyk0nx4s9n1qlgh9ccfxjy591lraj7b4j"; depends=[AnnotationDbi]; }; rhesuscdf = derive2 { name="rhesuscdf"; version="2.18.0"; sha256="0q2alkxm80wkzaf0q80df27q30qkswybavz05x6ywsihbs9h0nb8"; depends=[AnnotationDbi]; }; rhesusprobe = derive2 { name="rhesusprobe"; version="2.18.0"; sha256="0fd8pvwvpcmx41k80nbccjxllh39fvjf7l9dr8facisl1x7gsfil"; depends=[AnnotationDbi]; }; ri16cod_db = derive2 { name="ri16cod.db"; version="3.4.0"; sha256="1xz533vxjdyxx1wkks0kgk6b90sxs44iqcsvyds0xcm573bx8c6q"; depends=[AnnotationDbi org_Rn_eg_db]; }; + ribosomaldatabaseproject11_5MgDb = derive2 { name="ribosomaldatabaseproject11.5MgDb"; version="1.00.0"; sha256="04ppa4k8p54bmkq3jm41h0v4lb5hz95cmnakfzmqfml00ir04mxp"; depends=[metagenomeFeatures]; }; ricecdf = derive2 { name="ricecdf"; version="2.18.0"; sha256="07lsw9rklk2rsvbkcj1ci8hg2x68k3qpkx9yw0cmd7rg5fvydgns"; depends=[AnnotationDbi]; }; riceprobe = derive2 { name="riceprobe"; version="2.18.0"; sha256="0w6qvszdmnipn3v2bld46x7my2a9hni0jbxd0y1d6xcrrgs951ra"; depends=[AnnotationDbi]; }; rnu34_db = derive2 { name="rnu34.db"; version="3.2.3"; sha256="0ahridq75rmjyaivmlhn428wg712zv3003cbzzrajm9w6nibbfgk"; depends=[AnnotationDbi org_Rn_eg_db]; }; @@ -878,6 +901,7 @@ in with self; { rwgcod_db = derive2 { name="rwgcod.db"; version="3.4.0"; sha256="1k0fpnv314lx2jf3mm6xfqa3jx353sp42awxqys9byzhg9zyj2j3"; depends=[AnnotationDbi org_Rn_eg_db]; }; saureuscdf = derive2 { name="saureuscdf"; version="2.18.0"; sha256="0vmm3fy10dzzmaq22ah4fb0k3fs1gdbhnsi8mxz7xgp27dcan29j"; depends=[AnnotationDbi]; }; saureusprobe = derive2 { name="saureusprobe"; version="2.18.0"; sha256="0s5ma3hh7ncsi4dq33r3hwffk85x3gvjbm5cslppbsd0r0bjwkia"; depends=[AnnotationDbi]; }; + silva128_1MgDb = derive2 { name="silva128.1MgDb"; version="1.00.0"; sha256="0pwwxxa55d3919rbczg5iskd03ignimk80m52kfi930b1kdg9qc2"; depends=[metagenomeFeatures]; }; soybeancdf = derive2 { name="soybeancdf"; version="2.18.0"; sha256="1dlwxdslm827661z6f4z2hwr7wpwqfzvizhvv63p86ll7l6gs3s8"; depends=[AnnotationDbi]; }; soybeanprobe = derive2 { name="soybeanprobe"; version="2.18.0"; sha256="06dpwqad7q3wyq0bsgpwkw8kx1gq5fy1s1lw632xrvgcid2fsmf8"; depends=[AnnotationDbi]; }; sugarcanecdf = derive2 { name="sugarcanecdf"; version="2.18.0"; sha256="0wghc6wr7iwkql63m3wibjjdcdpqd53z0g5rxdh553sjb0ca2n7z"; depends=[AnnotationDbi]; }; @@ -898,8 +922,8 @@ in with self; { vitisviniferaprobe = derive2 { name="vitisviniferaprobe"; version="2.18.0"; sha256="1ggz1s37dwvrkhj4vx2civyhap7bgqsshy33lk14z4fjsayfi39a"; depends=[AnnotationDbi]; }; wheatcdf = derive2 { name="wheatcdf"; version="2.18.0"; sha256="1gmbrdilqvm54h6nkb1cm01ki8aipiywd4qj8gpwlm2hqrimr8kr"; depends=[AnnotationDbi]; }; wheatprobe = derive2 { name="wheatprobe"; version="2.18.0"; sha256="1fifi3pvzdrg356idwz0kx7qlf5mssdxlyvwpn3cjgw0z7n7cnw8"; depends=[AnnotationDbi]; }; - worm_db0 = derive2 { name="worm.db0"; version="3.6.0"; sha256="0k99b64gkzmvmrypd5r96k0y2i4ph0kr70kkfnhmmxgwgd8wg0db"; depends=[AnnotationDbi]; }; - xenopus_db0 = derive2 { name="xenopus.db0"; version="3.6.0"; sha256="1jgdidzpka00w21358rj2lrz1chh518iyqlrj3c5rsamrisdyj2c"; depends=[AnnotationDbi]; }; + worm_db0 = derive2 { name="worm.db0"; version="3.7.1"; sha256="0p5rzmkars7kl4y4mlq6jbmgp1mdfw3jcnvhl50dnpqc7h28y4xf"; depends=[AnnotationDbi]; }; + xenopus_db0 = derive2 { name="xenopus.db0"; version="3.7.1"; sha256="067vs7b2slmragqqnfpgy6m187cz1rx9r5agizrjycndzdzkpy3k"; depends=[AnnotationDbi]; }; xenopuslaeviscdf = derive2 { name="xenopuslaeviscdf"; version="2.18.0"; sha256="1bcz1hr7gxw6ac4qvw0giph6hfcf5i9b11s274ypq512qc1d32iq"; depends=[AnnotationDbi]; }; xenopuslaevisprobe = derive2 { name="xenopuslaevisprobe"; version="2.18.0"; sha256="0prb14zn2gvgxq8w0y21x1ng51cn3bgjhkppf7zkmnq1xkzvq0pw"; depends=[AnnotationDbi]; }; xlaevis_db = derive2 { name="xlaevis.db"; version="3.2.3"; sha256="0cdi71c8pflb8n4yfxc0wmfi51w6z0dlz7nw5hv0hkx547v79d53"; depends=[AnnotationDbi org_Xl_eg_db]; }; @@ -911,7 +935,7 @@ in with self; { ye6100subbcdf = derive2 { name="ye6100subbcdf"; version="2.18.0"; sha256="1169hv56981b915rlr5w5sn6ppyjd8as7f4k1hbjzadrdrl3glwp"; depends=[AnnotationDbi]; }; ye6100subccdf = derive2 { name="ye6100subccdf"; version="2.18.0"; sha256="0mhr4zd33gfvvivc17k7fb6nvmhq6h3q0xbx2zl09zd6qk09kizm"; depends=[AnnotationDbi]; }; ye6100subdcdf = derive2 { name="ye6100subdcdf"; version="2.18.0"; sha256="11b1fflgc34lrj4yf1p7way5n83cm9c7znsbxpzlwddwyy8qib30"; depends=[AnnotationDbi]; }; - yeast_db0 = derive2 { name="yeast.db0"; version="3.6.0"; sha256="0xv4v1ybcgz5ha7g98zkfmi6mw0ywrdfspzb39rj13np9bwrqfcp"; depends=[AnnotationDbi]; }; + yeast_db0 = derive2 { name="yeast.db0"; version="3.7.1"; sha256="1shjbflvlxipiyapwd6jpqs9mp8nyr3j63wcpnaznmxv0z5k0fw8"; depends=[AnnotationDbi]; }; yeast2_db = derive2 { name="yeast2.db"; version="3.2.3"; sha256="1xns0129ifklipbardybkjyxfwnlklavq0k6s15wk2iwk7vxa33s"; depends=[AnnotationDbi org_Sc_sgd_db]; }; yeast2cdf = derive2 { name="yeast2cdf"; version="2.18.0"; sha256="0c68val9x8bfnv4xx0vag9dxwsx5q8dzbj0dpha3nshh12jw48w9"; depends=[AnnotationDbi]; }; yeast2probe = derive2 { name="yeast2probe"; version="2.18.0"; sha256="125nif693qcmxc0nnnz917f9avggcdr8g9rfvx2qdc54a2l7vdb7"; depends=[AnnotationDbi]; }; @@ -920,7 +944,7 @@ in with self; { ygs98frmavecs = derive2 { name="ygs98frmavecs"; version="1.3.0"; sha256="1xrm1209xnknwvad7nvg1a0mbxz15z12yd4x5bia3cq03zcmzf9m"; depends=[]; }; ygs98probe = derive2 { name="ygs98probe"; version="2.18.0"; sha256="0awf6z4j2vb2jk9a9j2r512yd3m31660y68pasa9mp488m270a3q"; depends=[AnnotationDbi]; }; zebrafish_db = derive2 { name="zebrafish.db"; version="3.2.3"; sha256="1n6p04hlm5c32fnficx294s7n7izy5460avagw8hx1g5xryhdzqk"; depends=[AnnotationDbi org_Dr_eg_db]; }; - zebrafish_db0 = derive2 { name="zebrafish.db0"; version="3.6.0"; sha256="1c7m109yrpvzhj330n8rj1ppvwxr96nlhhwc48rj687qd1fnbj48"; depends=[AnnotationDbi]; }; + zebrafish_db0 = derive2 { name="zebrafish.db0"; version="3.7.1"; sha256="1x9s6sxxgijjnrvg4fggnqhv10zwsfw6hy1qa93rjmpgqpr7ad20"; depends=[AnnotationDbi]; }; zebrafishcdf = derive2 { name="zebrafishcdf"; version="2.18.0"; sha256="0sq1xqhblbilvaiabhqyl9gxdj3jg576vgq8v0cls1zvvx0isrx0"; depends=[AnnotationDbi]; }; zebrafishprobe = derive2 { name="zebrafishprobe"; version="2.18.0"; sha256="1pb8z2rdhq11hq391xyi236scyafbp56kbhhwsnha36yygz5drw0"; depends=[AnnotationDbi]; }; } diff --git a/pkgs/development/r-modules/bioc-experiment-packages.nix b/pkgs/development/r-modules/bioc-experiment-packages.nix index fbf8b26f0ea160918fe15e0328aa7a48bd8180f0..04f4d25def24b35fd716b58f2068387f760125cb 100644 --- a/pkgs/development/r-modules/bioc-experiment-packages.nix +++ b/pkgs/development/r-modules/bioc-experiment-packages.nix @@ -19,31 +19,36 @@ in with self; { AmpAffyExample = derive2 { name="AmpAffyExample"; version="1.21.0"; sha256="1k1qzxakbavm10bd0ybs1gk97w1y825iqvwimn0cr128qw2xxkyj"; depends=[affy]; }; AneuFinderData = derive2 { name="AneuFinderData"; version="1.9.0"; sha256="0m3pvsdd2y1947zl582791bsip95j41fc6g9gbin3cg51y7lb6xr"; depends=[]; }; AshkenazimSonChr21 = derive2 { name="AshkenazimSonChr21"; version="1.11.0"; sha256="08r5430gqsmkbh4n49ac2fl0m24zmqjnc9yxppw5mr0d4n5l26y5"; depends=[]; }; - BeadArrayUseCases = derive2 { name="BeadArrayUseCases"; version="1.19.0"; sha256="177zapqbf8ipavs1sp1gby99dbbzsyzgxyjhr258r7849b388k1v"; depends=[beadarray GEOquery limma]; }; - BloodCancerMultiOmics2017 = derive2 { name="BloodCancerMultiOmics2017"; version="1.1.1"; sha256="1x1cdq226gr69wlnl543ynvwrxd7fr7znvvh6x1ka8iw357sfglf"; depends=[beeswarm Biobase DESeq2 devtools dplyr ggdendro ggplot2 glmnet gtable ipflasso RColorBrewer reshape2 scales SummarizedExperiment survival tibble]; }; + AssessORFData = derive2 { name="AssessORFData"; version="0.99.2"; sha256="0yi2vxzg21nkqlywcpv6n2vzksl77cvkc42ii9p7gy9kpv56553k"; depends=[DECIPHER]; }; + BeadArrayUseCases = derive2 { name="BeadArrayUseCases"; version="1.19.1"; sha256="08c7aqnh4wnhnalrvchcyhy5vmxq5xkq26pmp9xjn2x4zwf4156y"; depends=[beadarray GEOquery limma]; }; + BloodCancerMultiOmics2017 = derive2 { name="BloodCancerMultiOmics2017"; version="1.1.4"; sha256="1hh1l134cmbcmyc40fwfrwrbx6qyiv9a3bz8hp9vbdf1vslhcnpk"; depends=[beeswarm Biobase DESeq2 devtools dplyr ggdendro ggplot2 glmnet gtable ipflasso RColorBrewer reshape2 scales SummarizedExperiment survival tibble]; }; CCl4 = derive2 { name="CCl4"; version="1.19.0"; sha256="1j4q7mm4lwi3rcf0y6zj36xc6n7c8y6l8iv9ac4avbgvr1rvlxaq"; depends=[Biobase limma]; }; CLL = derive2 { name="CLL"; version="1.21.0"; sha256="103lmn87zw73sx30ln6g4382ydpi97b1zsm7www8bwlnw6zx7k7g"; depends=[affy Biobase]; }; - CLLmethylation = derive2 { name="CLLmethylation"; version="1.1.0"; sha256="1rwnc84plgkzlz78gawjhjf4lf6gbdzgdhjp6ap49bqzgpp3c10a"; depends=[ExperimentHub SummarizedExperiment]; }; + CLLmethylation = derive2 { name="CLLmethylation"; version="1.1.1"; sha256="1vbvxb3bnwx4ngxkk6vrhshcfyrv0fvs3vhlqk0j9q1mhxg8p3a9"; depends=[ExperimentHub SummarizedExperiment]; }; COHCAPanno = derive2 { name="COHCAPanno"; version="1.17.0"; sha256="199xz5qwp06kr3smr25vx2w25hmzf7qbpaw18aj7bvccsdsyvky9"; depends=[]; }; CONFESSdata = derive2 { name="CONFESSdata"; version="1.9.0"; sha256="091ydgxqldrcr3b73pqyk6555yyclnnr4yizi0kknqasx33sb802"; depends=[]; }; COPDSexualDimorphism_data = derive2 { name="COPDSexualDimorphism.data"; version="1.17.0"; sha256="1pgfqrp6cx94marm96swqq8c9nr00xdmlf62hvmacqwspsajbnya"; depends=[]; }; COSMIC_67 = derive2 { name="COSMIC.67"; version="1.17.0"; sha256="0qd0xbc8hy25hyy8bilim2w5inhwz88rypbqc8vjlg54r2yl12nh"; depends=[GenomicRanges SummarizedExperiment VariantAnnotation]; }; - CRCL18 = derive2 { name="CRCL18"; version="0.115.0"; sha256="0y2v5fmlfj7hzkvw1l116vnczjnmhxd77gvdqjjynl9cgvlx0smq"; depends=[Biobase]; }; + CRCL18 = derive2 { name="CRCL18"; version="1.1.0"; sha256="1hxh7fldfy2v9sii5clwi9i568dcc742nd4da0048p4pm87qxcsv"; depends=[Biobase]; }; CardinalWorkflows = derive2 { name="CardinalWorkflows"; version="1.13.0"; sha256="1rjp3ybc0yx8sjqp4ahadgymlld2l2hn3dxxvpng06qpp5jch0zq"; depends=[Cardinal]; }; CellMapperData = derive2 { name="CellMapperData"; version="1.7.0"; sha256="0zjssdm2z7i6bcp781x9lz09dmh5krvvxg5a0la79dj5vvs72cjp"; depends=[CellMapper ExperimentHub]; }; - ChIC_data = derive2 { name="ChIC.data"; version="1.1.0"; sha256="07gyyv7bjfxa978c40lkh65m0x2zi855mapvwgpazqgq5qhxyfya"; depends=[caret]; }; + ChAMPdata = derive2 { name="ChAMPdata"; version="2.13.0"; sha256="1xa5lcxf7npb8mykqpx84vpjavl9xzwl24nlsaaw3gk75cfrhpkx"; depends=[BiocGenerics GenomicRanges]; }; + ChIC_data = derive2 { name="ChIC.data"; version="1.1.4"; sha256="0s8nm65kwk2cbs8g66zc46q31nd66fdm0kk0d6gxl6zhv0p3d8dv"; depends=[caret]; }; + ChIPXpressData = derive2 { name="ChIPXpressData"; version="1.19.0"; sha256="1f32hzqgpiclby25223ksp63xlhdk7d52sf2xc97hpjig0571630"; depends=[bigmemory]; }; ChIPexoQualExample = derive2 { name="ChIPexoQualExample"; version="1.5.0"; sha256="0y2s4hw7hbfspy1hjsqkaw72pm26k911699k6sw4jhvjh7mkvjbf"; depends=[]; }; ChimpHumanBrainData = derive2 { name="ChimpHumanBrainData"; version="1.19.0"; sha256="1i2aj1vxak6b53mpcd36q2xwgpddllqpqz3wii7rrsa9mg2gaaza"; depends=[affy hexbin limma qvalue statmod]; }; ConnectivityMap = derive2 { name="ConnectivityMap"; version="1.17.0"; sha256="1zz0vq192jfnp494mp61xmkxyd94bbh9xs268jd7ynnlpjp9phsx"; depends=[]; }; - CopyhelpeR = derive2 { name="CopyhelpeR"; version="1.13.0"; sha256="131yanjrw3zsp3ly9i3s2fla7v97wdrrcajsqw38fi8nrln24qbf"; depends=[]; }; - DAPARdata = derive2 { name="DAPARdata"; version="1.11.0"; sha256="0hf2ijncpsjyyvdwnpfb8agsz3w6ph8ga844cdf5q18l51iyprb4"; depends=[knitr MSnbase]; }; + CopyNeutralIMA = derive2 { name="CopyNeutralIMA"; version="0.99.14"; sha256="1lvdacdazpp071grc75gjxmhwjzkm22lhwzjvf6baclq9qfjgqp2"; depends=[ExperimentHub Rdpack]; }; + CopyhelpeR = derive2 { name="CopyhelpeR"; version="1.13.1"; sha256="014jissvpkj2d0sz3r1dr5c5qs29hbvs9jvm8bl86mld8ff3nlkc"; depends=[]; }; + DAPARdata = derive2 { name="DAPARdata"; version="1.11.4"; sha256="06qwja8qkbix6ial81yv1q3bxrdmqrgridina094p1xrxbfrn5sb"; depends=[knitr MSnbase]; }; DLBCL = derive2 { name="DLBCL"; version="1.21.0"; sha256="0advvjkd6skynjjnz4s9mdnh0l9l2zhn4n9x0kg23dmsg4r8vqm7"; depends=[Biobase]; }; DMRcatedata = derive2 { name="DMRcatedata"; version="1.17.0"; sha256="1a669jjvkjjklbh2kxrv3y2clfps067w6w19y1yr2a8wc7crbl4a"; depends=[GenomicRanges]; }; DREAM4 = derive2 { name="DREAM4"; version="1.17.0"; sha256="0s3y3wgg487p5fswbin4237mrm9kzbq12a84jiixhql1j2ysbhcs"; depends=[SummarizedExperiment]; }; - DeSousa2013 = derive2 { name="DeSousa2013"; version="1.17.0"; sha256="0ahldh3d6phm20ljnyx0hz7q0zk8r3i7i39wy1arqz0rqgmgzfql"; depends=[affy AnnotationDbi Biobase cluster ConsensusClusterPlus frma frmaTools gplots hgu133plus2_db hgu133plus2frmavecs pamr rgl ROCR siggenes survival sva]; }; - DmelSGI = derive2 { name="DmelSGI"; version="1.13.0"; sha256="1drs5gp2vh7m61wj6ypa9bpyn8igmzsql0ddyzpgp8sa99w0w7kd"; depends=[abind gplots igraph knitr limma rhdf5 TSP]; }; - DonaPLLP2013 = derive2 { name="DonaPLLP2013"; version="1.19.0"; sha256="04gphwyic256x2wzapr9kqzq1z10yl9a2s64m4dn3bwy4613b6rv"; depends=[EBImage]; }; + DeSousa2013 = derive2 { name="DeSousa2013"; version="1.17.2"; sha256="1xz1l83my34kwr4wk6vq3q5yzd3i0ky5qm44wx65f4d92hn7k3v5"; depends=[affy AnnotationDbi Biobase cluster ConsensusClusterPlus frma frmaTools gplots hgu133plus2_db hgu133plus2frmavecs pamr rgl ROCR siggenes survival sva]; }; + DmelSGI = derive2 { name="DmelSGI"; version="1.13.1"; sha256="0v25rb5myhki1vvmmzyhpa8n0vv623zj6lh26a10iq4i5bvda9c5"; depends=[abind gplots igraph knitr limma rhdf5 TSP]; }; + DonaPLLP2013 = derive2 { name="DonaPLLP2013"; version="1.19.1"; sha256="1sbhq0m67v5swyafrn74cjz4h3r6d1qmn2skkz3xwjgm70qpbjrb"; depends=[EBImage]; }; DrugVsDiseasedata = derive2 { name="DrugVsDiseasedata"; version="1.17.0"; sha256="05xykgmiakw6n8f1b86wbyjzs9v6b7qz8119pwvbfjgncgwqmcx9"; depends=[]; }; + DuoClustering2018 = derive2 { name="DuoClustering2018"; version="0.99.2"; sha256="0f4ps36wd1yll9w4zkx6n4kz0svqfajmb11a5c51b55572siq203"; depends=[dplyr ExperimentHub ggplot2 ggthemes magrittr mclust purrr reshape2 tidyr viridis]; }; DvDdata = derive2 { name="DvDdata"; version="1.17.0"; sha256="0x5crrym68rw2r9nmb33j1n1f5rxpj5rzn8b5j403ikxywfwxblh"; depends=[]; }; EGSEAdata = derive2 { name="EGSEAdata"; version="1.9.0"; sha256="1bmxm535h9ilnpbm196rf40543kh1yf5ldqxilhiyx5k0qaaihmz"; depends=[]; }; ELMER_data = derive2 { name="ELMER.data"; version="2.5.5"; sha256="192jdmxl17m8s1r95c2lizh2r5zpazvx0az8xj22dva0mrazql9c"; depends=[GenomicRanges]; }; @@ -53,30 +58,32 @@ in with self; { Fletcher2013a = derive2 { name="Fletcher2013a"; version="1.17.0"; sha256="05kvsbr46yjpkdnn7rwxhj3wnlrgz92fgg35b8i781131vpy4lzh"; depends=[Biobase gplots limma VennDiagram]; }; Fletcher2013b = derive2 { name="Fletcher2013b"; version="1.17.0"; sha256="1rfsb49fcn127nzykwndzp7gapd36j3r01dvvhn87w6ryy9yc98c"; depends=[Fletcher2013a igraph RColorBrewer RedeR RTN]; }; FlowSorted_Blood_450k = derive2 { name="FlowSorted.Blood.450k"; version="1.19.0"; sha256="0ngh5zwikm83rzv9aykhxijf7nj345nnak2207jn4frdq8qahh3l"; depends=[minfi]; }; - FlowSorted_Blood_EPIC = derive2 { name="FlowSorted.Blood.EPIC"; version="0.99.36"; sha256="1yyrcg1zzq9mv6zx9an4bpszh7r9vacwrbcpdza5ihi8w4pcfw9y"; depends=[ExperimentHub genefilter IlluminaHumanMethylationEPICanno_ilm10b4_hg19 minfi nlme quadprog S4Vectors SummarizedExperiment]; }; + FlowSorted_Blood_EPIC = derive2 { name="FlowSorted.Blood.EPIC"; version="0.99.37"; sha256="1kfh6x69r3vc7v3in1q1n8frbsha5z8gmds7dcgy39wvry16c6lm"; depends=[ExperimentHub genefilter IlluminaHumanMethylationEPICanno_ilm10b4_hg19 minfi nlme quadprog S4Vectors SummarizedExperiment]; }; FlowSorted_CordBlood_450k = derive2 { name="FlowSorted.CordBlood.450k"; version="1.9.0"; sha256="1ib9g4zy3zwk7m6hl9ggi030qwrjch9jnip6d7a4b27cjzlf0sdq"; depends=[minfi]; }; FlowSorted_CordBloodNorway_450k = derive2 { name="FlowSorted.CordBloodNorway.450k"; version="1.7.0"; sha256="04i701nl8w8sdc85z1y8gzg076n3znnd9fkp35a7pq7sczkfih90"; depends=[minfi]; }; FlowSorted_DLPFC_450k = derive2 { name="FlowSorted.DLPFC.450k"; version="1.17.0"; sha256="1d9xq8ha0p1injk8l16vggfkzk7xlsgaqb227gvl6xc49q8dmh5m"; depends=[minfi]; }; FunciSNP_data = derive2 { name="FunciSNP.data"; version="1.17.0"; sha256="1vp55zd2ifamxm248jskvf2y29cgjyx98jw41h2pbly31qxq4h49"; depends=[IRanges rtracklayer]; }; GGdata = derive2 { name="GGdata"; version="1.19.0"; sha256="0mr6l11bgg8ncga9ivwdps6jp6zbcjs5jxvcpf834qaj92h63mrg"; depends=[AnnotationDbi Biobase GGBase illuminaHumanv1_db snpStats]; }; - GSBenchMark = derive2 { name="GSBenchMark"; version="0.115.0"; sha256="1kpkn05a0r6wf1cv1q9gprgzgjaj8b2ig3apkaydjilcjykbr3vg"; depends=[]; }; + GIGSEAdata = derive2 { name="GIGSEAdata"; version="0.99.11"; sha256="1rn6dmji5ja1p83gai18bcmdc9vi0fm4pq4yk7wdsbv6p334cqlq"; depends=[]; }; + GSBenchMark = derive2 { name="GSBenchMark"; version="1.1.0"; sha256="1a9hlgcz9m36gzkmxkq4i308hsm617hmsxmwq09yd5cxq8dl80g4"; depends=[]; }; GSE62944 = derive2 { name="GSE62944"; version="1.9.0"; sha256="1s28rkr5nm91vnl6cx0gifib4nw70gs8bhmv003f9kbpiq420i8k"; depends=[Biobase GEOquery]; }; GSVAdata = derive2 { name="GSVAdata"; version="1.17.0"; sha256="1gjc9psmx0i25bwki6l74d8jg3mrvfzjdnxs5bhbqnzab6fzdfh0"; depends=[Biobase GSEABase hgu95a_db]; }; GWASdata = derive2 { name="GWASdata"; version="1.19.0"; sha256="0i09njrq0fzwvzj6lqsa7kdnwi35lm7z0akywh0mr87i6dlqj8sq"; depends=[GWASTools]; }; GeuvadisTranscriptExpr = derive2 { name="GeuvadisTranscriptExpr"; version="1.9.0"; sha256="1h6ghr75h1i87lbarsganiw6mgjyiha4zv4hbjdjljc464s11b0d"; depends=[]; }; - HDCytoData = derive2 { name="HDCytoData"; version="1.1.0"; sha256="1nlalaccb5y6vsl5k63qz2mcjr6k6syciv95l18962acgnlqbpq1"; depends=[ExperimentHub flowCore SummarizedExperiment]; }; + HD2013SGI = derive2 { name="HD2013SGI"; version="1.21.1"; sha256="1m3q08m21vim5j520wgiwszrp6nnkrsfqf6wac8cyzw1qs3cp1s6"; depends=[EBImage geneplotter gplots limma LSD RColorBrewer splots vcd]; }; + HDCytoData = derive2 { name="HDCytoData"; version="1.1.2"; sha256="1ay7r0aya0b6rxwscg3lwzlgl9iaj9ykii52lmzpxx40yc6szpnv"; depends=[ExperimentHub flowCore SummarizedExperiment]; }; HEEBOdata = derive2 { name="HEEBOdata"; version="1.19.0"; sha256="1z8qb5xrzadg6fxg8cx04dpad3qiab5m8vhgdqw4xs8xdaqd4g1m"; depends=[]; }; HIVcDNAvantWout03 = derive2 { name="HIVcDNAvantWout03"; version="1.21.0"; sha256="0pgb0r6zp6v0wq16c5zjxzjjwb6cjjp3cn8jnh4p91rwf43za4rh"; depends=[]; }; - HMP16SData = derive2 { name="HMP16SData"; version="1.1.0"; sha256="1a5plpx6fcdn924gpfqnw6ykqrc9m62rdkzwwgwfmzj1pl4585qn"; depends=[AnnotationHub assertthat dplyr ExperimentHub kableExtra knitr magrittr readr S4Vectors SummarizedExperiment tibble]; }; - HSMMSingleCell = derive2 { name="HSMMSingleCell"; version="0.115.0"; sha256="0v5ks29280bybzhi5sfsrbrdajh8a29jkrr2c44ld2qchs9qhgmm"; depends=[]; }; + HMP16SData = derive2 { name="HMP16SData"; version="1.1.4"; sha256="0qjqf7ipczv3rs4r4l5ynagi46ksb98b8mylgvbclrqp7ny2wcbq"; depends=[AnnotationHub assertthat dplyr ExperimentHub kableExtra knitr magrittr readr S4Vectors SummarizedExperiment tibble]; }; + HSMMSingleCell = derive2 { name="HSMMSingleCell"; version="1.1.0"; sha256="0fl3r3sdnnn3s9h5sn0bmgpi0hj965cwgca51qkwcvll4rjamyq2"; depends=[]; }; HarmanData = derive2 { name="HarmanData"; version="1.9.0"; sha256="1c6avjny0fasj99q0a2dm8p3h68jalcglx51b90fnyjgvqgx3h2g"; depends=[]; }; HarmonizedTCGAData = derive2 { name="HarmonizedTCGAData"; version="1.3.0"; sha256="07fvdf6kzipa42r5dmmld7p2chbi074d248da0xmlm8lm1i0wkc9"; depends=[ExperimentHub]; }; HelloRangesData = derive2 { name="HelloRangesData"; version="1.7.0"; sha256="05yr2mklxwfij6yzmhpk83mlrq7zfcn8finf2m4lrvdbdzl1bkki"; depends=[]; }; - HiCDataHumanIMR90 = derive2 { name="HiCDataHumanIMR90"; version="0.115.0"; sha256="1498q13fd190cnn6rh1m796zpalfwxfw275r33k8dnjfqiw5c4mc"; depends=[]; }; + HiCDataHumanIMR90 = derive2 { name="HiCDataHumanIMR90"; version="1.1.0"; sha256="0nmd7iqa6cg74xvz1a2x9ahyzs3kwd4fnhz5nkh62sgndj1pv62l"; depends=[]; }; HiCDataLymphoblast = derive2 { name="HiCDataLymphoblast"; version="1.17.0"; sha256="0hjhlq7vx71lwv37vidwlb819hm617dx7g39hgf20ggccmp310rh"; depends=[]; }; Hiiragi2013 = derive2 { name="Hiiragi2013"; version="1.17.0"; sha256="17mnwnpsam62mc8bqdwjfh9fiayasbkx1gd3bbp0k82w3az9yzbf"; depends=[affy Biobase boot clue cluster genefilter geneplotter gplots gtools KEGGREST lattice latticeExtra MASS mouse4302_db RColorBrewer xtable]; }; HumanAffyData = derive2 { name="HumanAffyData"; version="1.7.0"; sha256="02hp2a7h0ivzdfql3vsrvxrn4answlr7hrhw5azdjw8jh895dd1j"; depends=[Biobase ExperimentHub]; }; - IHWpaper = derive2 { name="IHWpaper"; version="1.9.2"; sha256="1ah85aim6mfjiv08pxr11d9x84ymki2kvnncx1iidkqd81h97ifk"; depends=[Biobase BiocGenerics BiocParallel cowplot DESeq2 dplyr fdrtool genefilter ggplot2 IHW qvalue Rcpp SummarizedExperiment]; }; + IHWpaper = derive2 { name="IHWpaper"; version="1.9.6"; sha256="19fg4ca9hhlh4as0nyd3qkkgqphghgvlcs57279pl42nphzz1hw0"; depends=[Biobase BiocGenerics BiocParallel cowplot DESeq2 dplyr fdrtool genefilter ggplot2 IHW qvalue Rcpp SummarizedExperiment]; }; ITALICSData = derive2 { name="ITALICSData"; version="2.19.0"; sha256="0i09g3dj3rz0yr4n35g9fhc5df957i928vbinsx2bl3jsj7xrf6f"; depends=[]; }; Illumina450ProbeVariants_db = derive2 { name="Illumina450ProbeVariants.db"; version="1.17.0"; sha256="1y219yqipskv3mzf7g75rmzwsp5sq2r9cqacbpyc2gk28z6dfnix"; depends=[]; }; IlluminaDataTestFiles = derive2 { name="IlluminaDataTestFiles"; version="1.19.0"; sha256="0b6zhvkhpjhz9wr3cfcvyy16l1kvd6aq9p58y78ql9rgpbhz7dcz"; depends=[]; }; @@ -84,7 +91,7 @@ in with self; { JASPAR2014 = derive2 { name="JASPAR2014"; version="1.17.0"; sha256="13hrxj4q2r9bdzwnl0qm5ap92051483876rwq73bz6hy5xg73abx"; depends=[Biostrings]; }; JASPAR2016 = derive2 { name="JASPAR2016"; version="1.9.0"; sha256="1gx14sjv9v5705h1763p5js37jrvvlkiqdm7nrawjs4n6y4cpsdf"; depends=[]; }; JctSeqData = derive2 { name="JctSeqData"; version="1.11.0"; sha256="1zrnmvs1mmg07s5fi8m5yqb975kb1nkx98j0shpk9xi5jdbf7x0d"; depends=[]; }; - KEGGandMetacoreDzPathwaysGEO = derive2 { name="KEGGandMetacoreDzPathwaysGEO"; version="0.115.0"; sha256="1y7nnqxaqv9khgy58wq4mflgl0nmk589bcc76chjx7cijq88v09r"; depends=[Biobase BiocGenerics]; }; + KEGGandMetacoreDzPathwaysGEO = derive2 { name="KEGGandMetacoreDzPathwaysGEO"; version="1.1.0"; sha256="1d4qg0svrmfc6v7dhgxbsn0xfhyplizfh113n26z64y97nfhc21p"; depends=[Biobase BiocGenerics]; }; KEGGdzPathwaysGEO = derive2 { name="KEGGdzPathwaysGEO"; version="1.19.0"; sha256="0w2a3yjp5xhbxq0vhzyka8sx17a095ddnpm4jhac65s6zmndgqr3"; depends=[Biobase BiocGenerics]; }; KOdata = derive2 { name="KOdata"; version="1.7.0"; sha256="0grvn2pc38zv133v60hvjh1jx9dsbrwxrz9c6fb977z1rznrkzz8"; depends=[]; }; LiebermanAidenHiC2009 = derive2 { name="LiebermanAidenHiC2009"; version="0.19.0"; sha256="1i6rl8mziv8apxxa2hlmsg6ramq4aasbg9nxj963lsk9b6gnrzlf"; depends=[IRanges KernSmooth]; }; @@ -101,15 +108,16 @@ in with self; { MMDiffBamSubset = derive2 { name="MMDiffBamSubset"; version="1.17.0"; sha256="1bjkdyf0knkdbzdmlas81dhnm5k7yslq6km3yzffrvn1kssml47i"; depends=[]; }; MSBdata = derive2 { name="MSBdata"; version="0.99.1"; sha256="1bgzzrynb4066xps7wagawb2pjd64qab7n9il2znsidfprm03bxj"; depends=[]; }; MSstatsBioData = derive2 { name="MSstatsBioData"; version="1.3.0"; sha256="10i3gg9fbhcj6fz4fz1jzmqmabdf9c39ys8yp40qs60glv9gj3qa"; depends=[]; }; - MUGAExampleData = derive2 { name="MUGAExampleData"; version="0.115.0"; sha256="1ls2rhjx9ksdlz28dw3rm59rh6k17xyilda92ib48p7898njgf1c"; depends=[]; }; - MetaGxBreast = derive2 { name="MetaGxBreast"; version="1.1.0"; sha256="03k4ddgjvrpgg9xikjhy1ayampr8v18ncm57jpnn9wrijvyinpfj"; depends=[AnnotationHub Biobase ExperimentHub impute lattice]; }; - MetaGxOvarian = derive2 { name="MetaGxOvarian"; version="1.1.0"; sha256="0d7kpm9cqxkwnnickk0hcc2y0x4ah3mh8ajpdrhrylvffbmx4r38"; depends=[AnnotationHub Biobase ExperimentHub impute lattice]; }; - MetaGxPancreas = derive2 { name="MetaGxPancreas"; version="1.1.0"; sha256="0mpspppz8bmq90aq9jvvqs5700n0dkiqcd5pdrsija8ycp2gbxc9"; depends=[AnnotationHub Biobase ExperimentHub impute lattice]; }; + MUGAExampleData = derive2 { name="MUGAExampleData"; version="1.1.0"; sha256="18y2ljddzk0g7cn5v8cpc151mrdfzhvj0ah4c988lmc6xlqcyjsv"; depends=[]; }; + MetaGxBreast = derive2 { name="MetaGxBreast"; version="1.1.1"; sha256="1lzqv8alxccmfp6s4ylyam9ljwga9p9q5ndnhsljnfiyw820md78"; depends=[AnnotationHub Biobase ExperimentHub impute lattice]; }; + MetaGxOvarian = derive2 { name="MetaGxOvarian"; version="1.1.1"; sha256="1djqlmms5a24g8n6mimp4fib3h6qd17p1cl9anzmvl3zscz23p8y"; depends=[AnnotationHub Biobase ExperimentHub impute lattice]; }; + MetaGxPancreas = derive2 { name="MetaGxPancreas"; version="1.1.1"; sha256="17vjfnlxrkmdxifmbpfq81zqzzpdhkm5s1aagcnrhgzkv9prszms"; depends=[AnnotationHub Biobase ExperimentHub impute lattice]; }; MethylAidData = derive2 { name="MethylAidData"; version="1.13.0"; sha256="157qvzvw8hhw25qnzv7xax3vzmq38bw4fp0k34jfwgq944srv0h5"; depends=[MethylAid]; }; - Mulder2012 = derive2 { name="Mulder2012"; version="0.21.0"; sha256="10mciqb0vh32hx1590r99zyr0pbx84hrssdpjz6i8g9hzlp69wvm"; depends=[HTSanalyzeR igraph KEGG_db MASS org_Hs_eg_db PANR pvclust RedeR]; }; + Mulder2012 = derive2 { name="Mulder2012"; version="0.21.1"; sha256="1ypxdys24g8k98jd50sldqggy28fmjy1cq7gc3pxa10rww6g9h57"; depends=[HTSanalyzeR igraph KEGG_db MASS org_Hs_eg_db PANR pvclust RedeR]; }; NCIgraphData = derive2 { name="NCIgraphData"; version="1.17.0"; sha256="090s04iwbnhdbgprcy15hl596vmgq8x97v34w2xvmsdld5b8z58d"; depends=[]; }; - NGScopyData = derive2 { name="NGScopyData"; version="0.115.0"; sha256="1l949sqfywpa5rqxh8h6wq5i8cqmf9ly1ghcrb0gmxv2rcazbn87"; depends=[]; }; + NGScopyData = derive2 { name="NGScopyData"; version="1.1.0"; sha256="13dlsznbg3kk7pi0gdzwnh9i3qdk538qh4rnjbpxr6iw61hwl0zd"; depends=[]; }; Neve2006 = derive2 { name="Neve2006"; version="0.19.0"; sha256="0fn77ic133wfdjrnh5vdk95rwx51nigfmznb7i94n8h5hddmpnbc"; depends=[annotate Biobase hgu133a_db]; }; + OMICsPCAdata = derive2 { name="OMICsPCAdata"; version="0.99.11"; sha256="1w38ii5wsaiar4lbn5428pyinzg07zvw4c7fac6a3nx70mhpnxn5"; depends=[MultiAssayExperiment]; }; OnassisJavaLibs = derive2 { name="OnassisJavaLibs"; version="1.3.0"; sha256="0ih472qrzx183pyk0k8agwybn5bycx3hx1j2amjkp42p7hml4iqj"; depends=[rJava]; }; PCHiCdata = derive2 { name="PCHiCdata"; version="1.9.0"; sha256="19cmbyhsi84pi89fy623f7r5yld7qifnqfpvwcb3n7ads5idq1qm"; depends=[Chicago]; }; PGPC = derive2 { name="PGPC"; version="1.9.0"; sha256="10z8r98lp92dh14wpf2hs5n3jzw9y3dw6mf5ssx469368hhaypma"; depends=[ChemmineR EBImage geneplotter ggplot2 gplots imageHTS limma plyr RColorBrewer reshape2 SearchTrees splots]; }; @@ -120,7 +128,7 @@ in with self; { PasillaTranscriptExpr = derive2 { name="PasillaTranscriptExpr"; version="1.9.0"; sha256="1lkqz0kp1jfsi1bvkqhvlqapp658qfm7b1p9kiwk9qakfl0nm7x6"; depends=[]; }; PathNetData = derive2 { name="PathNetData"; version="1.17.0"; sha256="02wdp23y583p9sinhaqkv6lxp836m6kh7na8b2wv6qajanibzhl1"; depends=[]; }; ProData = derive2 { name="ProData"; version="1.19.0"; sha256="0idv9icfzr52k96gij5mlyqyd48mjwka7jg1nhawiaj7g4c005yc"; depends=[Biobase]; }; - PtH2O2lipids = derive2 { name="PtH2O2lipids"; version="1.7.0"; sha256="1dql2jfvsqn2r1cq1bfg7nfs7gimim6jgsvz7b9pqk1zdh02jhkm"; depends=[CAMERA LOBSTAHS xcms]; }; + PtH2O2lipids = derive2 { name="PtH2O2lipids"; version="1.7.1"; sha256="1ypwwrk643shfng4nqs7jpy25058ni2fqq4jhx2yc1j73bx8k834"; depends=[CAMERA LOBSTAHS xcms]; }; QDNAseq_hg19 = derive2 { name="QDNAseq.hg19"; version="1.11.0"; sha256="134mzg2r3bpzcpag5vf2fq8g0xczb5qxyvqqcjzqw654mbafgczr"; depends=[QDNAseq]; }; QDNAseq_mm10 = derive2 { name="QDNAseq.mm10"; version="1.11.0"; sha256="1j5qzwbc7a9h9hlda6c6f53pm6vqm4kdja4z144j4snyac88xclm"; depends=[QDNAseq]; }; QUBICdata = derive2 { name="QUBICdata"; version="1.9.0"; sha256="1r1wcmd7s17gm5q682siy8ld65w6ylch9jamqjlbp8qiqqvfmzdd"; depends=[]; }; @@ -128,28 +136,30 @@ in with self; { RIPSeekerData = derive2 { name="RIPSeekerData"; version="1.17.0"; sha256="11hrk3cf86jgc7vf14wlyarar2vsnjs0i9wyzvmk76draq9frg30"; depends=[RIPSeeker]; }; RITANdata = derive2 { name="RITANdata"; version="1.5.0"; sha256="0yn8nfvni9h4k9ngzccsqgbjrjvql5gp3haqyg9x334sjsi212c8"; depends=[]; }; RMassBankData = derive2 { name="RMassBankData"; version="1.19.0"; sha256="172x6x7fnzjczi76ibmscbb51l8185lqgiypyyvlisp145mxssdn"; depends=[]; }; - RNAinteractMAPK = derive2 { name="RNAinteractMAPK"; version="1.19.0"; sha256="01sf7pbcsibdm5dhh9zv2gg2g58z6vswhdz227qfd6cvbpnpqr7b"; depends=[fields gdata genefilter MASS RNAinteract sparseLDA]; }; + RNASeqRData = derive2 { name="RNASeqRData"; version="0.99.8"; sha256="0mfgfmbngx87h9ymbqcdabla5rb26p1kh4rvp3g307rp3hraivcp"; depends=[]; }; + RNAinteractMAPK = derive2 { name="RNAinteractMAPK"; version="1.19.1"; sha256="1c90s1vjp4w065zldlzrn64qakwnhfg3s6w3ddmx6hynbrc8lk8j"; depends=[fields gdata genefilter MASS RNAinteract sparseLDA]; }; RNAseqData_HNRNPC_bam_chr14 = derive2 { name="RNAseqData.HNRNPC.bam.chr14"; version="0.19.0"; sha256="0z1b986jvinzh3c1yl9q8wa66wgq8hp8rjbs23glxna77znvkp87"; depends=[]; }; - RRBSdata = derive2 { name="RRBSdata"; version="0.115.0"; sha256="0i33fm60lcjczzc4xx6y1gg5jsxlq0v9bz46hym7aq59zlpbqh6p"; depends=[BiSeq]; }; - RTCGA_CNV = derive2 { name="RTCGA.CNV"; version="1.9.0"; sha256="0an39dgcapfn7i5h1inbjihl224l945g0rax5h33bmpnzlry1a8a"; depends=[RTCGA]; }; - RTCGA_PANCAN12 = derive2 { name="RTCGA.PANCAN12"; version="1.9.0"; sha256="1lh2ij6x796rn39j1awn461jc0snswp14x6z338gqz58dahjfr1x"; depends=[RTCGA]; }; - RTCGA_RPPA = derive2 { name="RTCGA.RPPA"; version="1.9.0"; sha256="0micdaglaqfbg2pg9b0jpnvfi91adms8lg7sq7k9srgyjx2dsdid"; depends=[RTCGA]; }; + RRBSdata = derive2 { name="RRBSdata"; version="1.1.0"; sha256="18xm228jlpvv5z5r5k3nyjnnmizsyg5lkml4kdrkw8mv7gljgcyb"; depends=[BiSeq]; }; + RTCGA_CNV = derive2 { name="RTCGA.CNV"; version="1.9.2"; sha256="19lwjkzs0wrvrgm5a81wq2qcqv2xa1irfnqbv6yrx9c3g3sk6zqi"; depends=[RTCGA]; }; + RTCGA_PANCAN12 = derive2 { name="RTCGA.PANCAN12"; version="1.9.2"; sha256="1ain3wscy6n1jjcb8wajpn9h7flhppih01mjjv6y3dxyyiqqchim"; depends=[RTCGA]; }; + RTCGA_RPPA = derive2 { name="RTCGA.RPPA"; version="1.9.2"; sha256="0fisrp4mgl035lcwg4pj1zcrmfafsc0kgc6788h9nx9b1vh6s7w9"; depends=[RTCGA]; }; RTCGA_clinical = derive2 { name="RTCGA.clinical"; version="20151101.11.0"; sha256="1y63vnj59sv73zcrnwqd4ikdjx45y9sqb2pj1lnsrhvfbmjazi5z"; depends=[RTCGA]; }; - RTCGA_mRNA = derive2 { name="RTCGA.mRNA"; version="1.9.0"; sha256="094yh17af0x4zb97dcmrfxqviylqmr3zii3jya6iwwr2jay5a8wh"; depends=[RTCGA]; }; - RTCGA_methylation = derive2 { name="RTCGA.methylation"; version="1.9.0"; sha256="0m3i7srvdjjkynnizh7jq8d70rm7cq0wi6182iafdgyaxip2qxgk"; depends=[RTCGA]; }; - RTCGA_miRNASeq = derive2 { name="RTCGA.miRNASeq"; version="1.9.0"; sha256="1nw57daaf3z5k2m52rw72ncxj68bkjmpq158z59v8zm5cpm8z33f"; depends=[RTCGA]; }; + RTCGA_mRNA = derive2 { name="RTCGA.mRNA"; version="1.9.2"; sha256="1bb9b83y3f9012gnr19c2wacj1fkqvbqnymdv3qyc2pn6qhzid93"; depends=[RTCGA]; }; + RTCGA_methylation = derive2 { name="RTCGA.methylation"; version="1.9.2"; sha256="1a97cdwm7rn9mipw3v904r4j4ay6p26rv3f8lx2znhz5hg44gnaq"; depends=[RTCGA]; }; + RTCGA_miRNASeq = derive2 { name="RTCGA.miRNASeq"; version="1.9.2"; sha256="1lkywq2nvpil8wi8nv73hfxs3hsi71d85n9if7ra4c6ib3frwiwb"; depends=[RTCGA]; }; RTCGA_mutations = derive2 { name="RTCGA.mutations"; version="20151101.11.0"; sha256="1wyiz22rw400hiqqnw41mqpvy8bbj1vxwx3v4vnz6x81drv2sc1n"; depends=[RTCGA]; }; RTCGA_rnaseq = derive2 { name="RTCGA.rnaseq"; version="20151101.11.0"; sha256="0z2k651pd0m9lxl3n62xf41xhk65n33cgf7d5zfwd03hbc07d0gq"; depends=[RTCGA]; }; - RUVnormalizeData = derive2 { name="RUVnormalizeData"; version="0.115.0"; sha256="0vyy1sarkb64vjq1c3mrd0d04hnfy4aigi7zgvaniv31ab6hpb05"; depends=[Biobase]; }; + RUVnormalizeData = derive2 { name="RUVnormalizeData"; version="1.1.0"; sha256="002q9rc6d0cr6gip9irlafi67ds4jlvxfnil2if30aw4h6l4apkn"; depends=[Biobase]; }; RcisTarget_hg19_motifDBs_cisbpOnly_500bp = derive2 { name="RcisTarget.hg19.motifDBs.cisbpOnly.500bp"; version="1.1.1"; sha256="08p1r5vpz92i7nmgdjsp0i5wzypb46lsdnlykci21nzf9ip12mc9"; depends=[data_table]; }; - RforProteomics = derive2 { name="RforProteomics"; version="1.19.1"; sha256="1dy4d1wyf8ifdhy8psy533yy8liwgb26gbwqv1rdzjxgzai8f3jr"; depends=[AnnotationDbi Biobase BiocInstaller biocViews DT interactiveDisplay MSnbase R_utils rpx shiny]; }; - RnBeads_hg19 = derive2 { name="RnBeads.hg19"; version="1.13.0"; sha256="1p3b97f8kmilpwgf61p4kwkizdn8a07ai9a2x3hy4igzw21fcgz5"; depends=[GenomicRanges]; }; + RegParallel = derive2 { name="RegParallel"; version="0.99.9"; sha256="0n0qyiz2bqw5wi35f8rszrx668dl6hqw054lqakb2dpfpjlzz57y"; depends=[arm data_table doParallel foreach iterators MASS stringr survival]; }; + RforProteomics = derive2 { name="RforProteomics"; version="1.19.4"; sha256="1mm1cfsazajkhaim4grz2zi7ar4x2ljn5vq4rlv20gra3d4b82ca"; depends=[BiocManager biocViews MSnbase R_utils shiny]; }; + RnBeads_hg19 = derive2 { name="RnBeads.hg19"; version="1.13.1"; sha256="1l3za4hbrg38p9sh38qsj17hgg03cbgqga4zg0c4lcipifrpbbfj"; depends=[GenomicRanges]; }; RnBeads_hg38 = derive2 { name="RnBeads.hg38"; version="1.13.0"; sha256="1wyy4m3p40i12hlwvz9ixqps8i4d5703gl0pcgl4i2485d78yv9v"; depends=[GenomicRanges]; }; RnBeads_mm10 = derive2 { name="RnBeads.mm10"; version="1.13.0"; sha256="1kjvy1v0dbdm959cmsf2d5mnrbnisjpff12wl5gn44n2cg7bb65g"; depends=[GenomicRanges]; }; RnBeads_mm9 = derive2 { name="RnBeads.mm9"; version="1.13.0"; sha256="1s1iy8x1x53ny1pyfgwwkiwc3jpjhdkcd9vpwyv2ix5g22jf8ag7"; depends=[GenomicRanges]; }; RnBeads_rn5 = derive2 { name="RnBeads.rn5"; version="1.13.0"; sha256="1pp9y94rdk5wwapc4jbvs35x1z2agv4xvzxy3fl3h7hp22gaqr9p"; depends=[GenomicRanges]; }; RnaSeqSampleSizeData = derive2 { name="RnaSeqSampleSizeData"; version="1.13.1"; sha256="1cqannbgpr0s9qr1cx4d23rwjy6k63x25khdr7qx5939chz0r21a"; depends=[edgeR]; }; - SCLCBam = derive2 { name="SCLCBam"; version="1.13.0"; sha256="1ynibzjlyfscg5b1lxa5nvfznp106vb4h7ia6n847h3n5s6ndasv"; depends=[]; }; + SCLCBam = derive2 { name="SCLCBam"; version="1.13.1"; sha256="1b6da5i20w7w08jv3s2xdpp71qf7y1nxyv3qj3fz5jkw2aavds5f"; depends=[]; }; SNAData = derive2 { name="SNAData"; version="1.27.0"; sha256="182pramjd14g1p0aawcjrv51xlyqkp9mhm84v3gnd9gnmkb69b31"; depends=[graph]; }; SNAGEEdata = derive2 { name="SNAGEEdata"; version="1.17.0"; sha256="15l23gw5ckxgr6pscl07jqwb1lz58g5893wnlzz4zpk3sd46d2p6"; depends=[]; }; SNPhoodData = derive2 { name="SNPhoodData"; version="1.11.0"; sha256="1zm0zhf2987hls15b47jv6krn1cc8kp6jm64k4wqhp4dsjxwbaqd"; depends=[]; }; @@ -162,21 +172,23 @@ in with self; { TBX20BamSubset = derive2 { name="TBX20BamSubset"; version="1.17.0"; sha256="15521vpi6h1ydl8vw43h0plrgy7baj5bprzg8rs50yxgkphh9nns"; depends=[Rsamtools xtable]; }; TCGAMethylation450k = derive2 { name="TCGAMethylation450k"; version="1.17.0"; sha256="090y4vyipnlxxg78yxva7q5y81gawfpmkgjrsqiqr1smfalvx9yw"; depends=[]; }; TCGAWorkflowData = derive2 { name="TCGAWorkflowData"; version="1.5.0"; sha256="0kbab7fjy7waq5r6k2w0c8x811xd62v39p17acd5gk8gbw9gy919"; depends=[SummarizedExperiment]; }; - TCGAbiolinksGUI_data = derive2 { name="TCGAbiolinksGUI.data"; version="1.1.0"; sha256="0l65f933xxngfm6z5576disj60xasm386x8balsrymcvjkpksr7q"; depends=[]; }; - TCGAcrcmRNA = derive2 { name="TCGAcrcmRNA"; version="0.115.0"; sha256="1bmn0r5bx2vc4cpv48mbhr57gpidr42mgaxliwmkyj0dqbjnzmqd"; depends=[Biobase]; }; - TCGAcrcmiRNA = derive2 { name="TCGAcrcmiRNA"; version="0.115.0"; sha256="1n7qq2gc3mcfh4c1y2myrb1pj6bq8l7m7nwhlk0ps90zlj064isp"; depends=[Biobase]; }; - TENxBrainData = derive2 { name="TENxBrainData"; version="1.1.0"; sha256="032z307qh7idxkzqc8b5gngysmw8iy1s3z1r8747n495dy85ippz"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; }; + TCGAbiolinksGUI_data = derive2 { name="TCGAbiolinksGUI.data"; version="1.1.1"; sha256="0lg2xmf9crcd3328sikjynicrapm32ffq8ay9p0r484rx0m5yvbp"; depends=[]; }; + TCGAcrcmRNA = derive2 { name="TCGAcrcmRNA"; version="1.1.0"; sha256="160gj5q4n08l3llfqd0iim2054v8jd3a2pvvd7454amangnrrjd1"; depends=[Biobase]; }; + TCGAcrcmiRNA = derive2 { name="TCGAcrcmiRNA"; version="1.1.0"; sha256="1njy5ab0a8p97gi8ci0bad1byl5k42a5shjrss8z9k3a0n9jzpxm"; depends=[Biobase]; }; + TENxBrainData = derive2 { name="TENxBrainData"; version="1.1.2"; sha256="1m4cajmp1h5mahlxbvyfvslqq3yfbcy8k46m5p0b73phvnw44846"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; }; + TENxPBMCData = derive2 { name="TENxPBMCData"; version="0.99.3"; sha256="00xjm8xr5f1dzghmr6p3mcjcir6a81gd99kgzznj5k90assggr45"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; }; + TabulaMurisData = derive2 { name="TabulaMurisData"; version="0.99.2"; sha256="185y3cxdkgj4gl4ai0nc0684nz357qscfsah559wdvvvqny25dmk"; depends=[ExperimentHub]; }; TargetScoreData = derive2 { name="TargetScoreData"; version="1.17.0"; sha256="12bmw3qmkw9blmr5ikgx0qyfv1x6hda8d41fiy8gsb74fa4nifsv"; depends=[]; }; - TargetSearchData = derive2 { name="TargetSearchData"; version="1.19.0"; sha256="024av13qimrl55dwkw46rfx9gr6kdghnf1n5qcr4q7h5i9frdfxg"; depends=[]; }; + TargetSearchData = derive2 { name="TargetSearchData"; version="1.19.1"; sha256="1hwfqsz1rivqq14x5z9d8nphxajfxhm70mgbi0pjzlzsravg487w"; depends=[]; }; TimerQuant = derive2 { name="TimerQuant"; version="1.11.0"; sha256="1a49jaxgjhwl756a7wijswa90z03fz61ffp6w5h00v9qfzgnyf79"; depends=[deSolve dplyr ggplot2 gridExtra locfit shiny]; }; VariantToolsData = derive2 { name="VariantToolsData"; version="1.5.0"; sha256="1kkz3zvba4mc237pxwj6z0c2jvbrgfaz3n5vm55bz6j47aas3i4j"; depends=[BiocGenerics GenomicRanges VariantAnnotation]; }; WES_1KG_WUGSC = derive2 { name="WES.1KG.WUGSC"; version="1.13.0"; sha256="0f3llqwkc5d4av47871d45lfqghmncww9g5rgf58pydrnw7n93xv"; depends=[]; }; XhybCasneuf = derive2 { name="XhybCasneuf"; version="1.19.0"; sha256="1kac43fvng1pwa8hlbivd8pxan7agp9csp0nmh062x4kwamny3hm"; depends=[affy ath1121501cdf RColorBrewer tinesath1cdf]; }; affycompData = derive2 { name="affycompData"; version="1.19.0"; sha256="14ss2b854dj36rzhx1z854r5hkxy0yqzlm5k0690gn5bwlah6rk6"; depends=[affycomp Biobase]; }; affydata = derive2 { name="affydata"; version="1.29.0"; sha256="0sv5q59xfvlyk97ihki5sqdzy9nldjccxiscx3ii1xpp4xk44i3c"; depends=[affy]; }; - airway = derive2 { name="airway"; version="0.115.0"; sha256="1h823q96za4jrzf680bp651blh5giqwx660nhp7xhl3drxpzf1ir"; depends=[SummarizedExperiment]; }; - allenpvc = derive2 { name="allenpvc"; version="0.99.1"; sha256="1g0bk3v2gmhr2ck4kdc2pb6xj8abk9kgk0h5f0hdfbaxjdrhwpx3"; depends=[AnnotationHub ExperimentHub SingleCellExperiment]; }; - alpineData = derive2 { name="alpineData"; version="1.7.0"; sha256="18llr6pssxmrvw3qzxw4f77bpv8g3akz3kbsn9xsdsij364q33am"; depends=[AnnotationHub ExperimentHub]; }; + airway = derive2 { name="airway"; version="1.1.0"; sha256="0daywdjalqbqx6gxrg4fwiasa62h9jh8ibg9kh0vrd35mdazh7b4"; depends=[SummarizedExperiment]; }; + allenpvc = derive2 { name="allenpvc"; version="0.99.2"; sha256="04f6y2zk7c8prk22yl15qp9xf81dickn2ida8b5jdhzby6a4p1d1"; depends=[AnnotationHub ExperimentHub SingleCellExperiment]; }; + alpineData = derive2 { name="alpineData"; version="1.7.1"; sha256="1gdj474nc2s92i2m1f02ganr5vsv93315mk3dqdyyk05xr9banbw"; depends=[AnnotationHub ExperimentHub GenomicAlignments]; }; antiProfilesData = derive2 { name="antiProfilesData"; version="1.17.0"; sha256="0wyjfc02wm5x5d61fs6cs7g3s0j4aibpqkdiwx0d8cbbkl38ih3f"; depends=[Biobase]; }; aracne_networks = derive2 { name="aracne.networks"; version="1.7.0"; sha256="1acngnqvg7vl402yfcw65rqs27a7sncl1xfz2893abfli2ccpbzx"; depends=[viper]; }; bcellViper = derive2 { name="bcellViper"; version="1.17.0"; sha256="0rzzj4pla57z9825jcs2kx177xrcqfnh7jai41m8dwfxln6ccz25"; depends=[Biobase]; }; @@ -184,7 +196,9 @@ in with self; { beta7 = derive2 { name="beta7"; version="1.19.0"; sha256="1gd1l8rh73k27sm1cjfy9rmsplrkji3zhzrzcldjmaaixl5nfjql"; depends=[marray]; }; biotmleData = derive2 { name="biotmleData"; version="1.5.0"; sha256="0ccx398761qdnnsrjwrrg6qjrq01fv88999f2llyq9gpd3f43lgs"; depends=[]; }; bladderbatch = derive2 { name="bladderbatch"; version="1.19.0"; sha256="0n9vwbj8cii67rhxvb1ps72k99rv251zcdr4w3r1jkbvcd61nvh0"; depends=[Biobase]; }; - blimaTestingData = derive2 { name="blimaTestingData"; version="0.115.0"; sha256="1hzmwjmyi6qnkqnq2x6ml8yvzn1sr33lwc6nhz2k2mx6s2l4ajbb"; depends=[]; }; + blimaTestingData = derive2 { name="blimaTestingData"; version="1.1.0"; sha256="0r51zz7kh16zgadr2vzgrm5fywfs03mk2jk5qywb27agqbw5y40s"; depends=[]; }; + brainImageRdata = derive2 { name="brainImageRdata"; version="0.99.6"; sha256="0wbj8y1qskc23gqdwc815racv7kqplmh1v12y5y094fcgs6cq62p"; depends=[ExperimentHub]; }; + breakpointRdata = derive2 { name="breakpointRdata"; version="0.99.2"; sha256="13mfnd2ms1fnk6zmyz8l10qw8xhfmb8qjyc2r7hn1qmap6ld578f"; depends=[]; }; breastCancerMAINZ = derive2 { name="breastCancerMAINZ"; version="1.19.0"; sha256="0pn48n81vx2wq425q5wnga6n32apgajk0bwq78ri983plh7ik2b1"; depends=[]; }; breastCancerNKI = derive2 { name="breastCancerNKI"; version="1.19.0"; sha256="0b6z16m6kqkd8rfrdvjp6p4fbqs78s25fbiswnw0k8jzvz5yw5x7"; depends=[]; }; breastCancerTRANSBIG = derive2 { name="breastCancerTRANSBIG"; version="1.19.0"; sha256="0slagz3x2q1qykvjcfnh7k3ggpn2g34j4iqvnv7j3mdcc085hn1d"; depends=[]; }; @@ -196,7 +210,9 @@ in with self; { bsseqData = derive2 { name="bsseqData"; version="0.19.1"; sha256="0gqwyx0l0xmd2aa46shq4kr11nfi1imj2pwfjc9026r47af5b84h"; depends=[bsseq]; }; cMap2data = derive2 { name="cMap2data"; version="1.17.0"; sha256="11973w3gjz0qayxacx41mlbf4ji345js8jgjkn2aba0ahnyzb6vw"; depends=[]; }; cancerdata = derive2 { name="cancerdata"; version="1.19.0"; sha256="02zi60lh6jsg6hlyyq6wzg9lzxjr8m9418kywlk3x3c6kkgkrh69"; depends=[Biobase]; }; - ccTutorial = derive2 { name="ccTutorial"; version="1.19.0"; sha256="0xd3zrcia312h947nvah3ksx9kxzhqzc9c2nm5q6ssvx15s6f6d6"; depends=[affy Biobase Ringo topGO]; }; + ccTutorial = derive2 { name="ccTutorial"; version="1.19.3"; sha256="1bghwfpdm2xzh6w1z2pinv9wxy3f5vx8aabyl5vj9smfmplgcmxx"; depends=[affy Biobase Ringo topGO]; }; + ccdata = derive2 { name="ccdata"; version="1.7.0"; sha256="1vdsldxl1xnjdi9ai346a1zx9jp6kw33884vwwy86xmj7799j3y1"; depends=[]; }; + celarefData = derive2 { name="celarefData"; version="0.99.0"; sha256="118rdgkz4vlhk5n5c683sl28xsjqds6m08w3nfsw8z7ki6kng9sx"; depends=[]; }; ceu1kg = derive2 { name="ceu1kg"; version="0.19.0"; sha256="0vs60mflfc1pnc7s725wsyq2jrj44jrvxwzpw4bhlj0qbs602s8l"; depends=[Biobase GGBase GGtools]; }; ceu1kgv = derive2 { name="ceu1kgv"; version="0.23.0"; sha256="10jnbc8y386racq3ac1hf1dp76wvzlfm8p66c94pk3f2m0w45psv"; depends=[Biobase GGBase]; }; ceuhm3 = derive2 { name="ceuhm3"; version="0.19.0"; sha256="1qdp85ps5xrlx1pl769j91aig2rgxcix4pdzrsa249nyyq1avdym"; depends=[Biobase GGBase GGtools]; }; @@ -209,11 +225,11 @@ in with self; { curatedBladderData = derive2 { name="curatedBladderData"; version="1.17.0"; sha256="14xwq55g83pvwyxm7kl6hq9c4j2bd6vp63afir619d5binl6i7ln"; depends=[affy]; }; curatedBreastData = derive2 { name="curatedBreastData"; version="2.9.0"; sha256="024sx3am50vsaaixmj8gfp3f905rf7g7qyn47sdakpv6sx48k1zl"; depends=[Biobase BiocStyle ggplot2 impute XML]; }; curatedCRCData = derive2 { name="curatedCRCData"; version="2.13.0"; sha256="1f6m6sllbxzca27lwyvav2d4si65w7fs9mh4mksw2sn8n8x5452v"; depends=[BiocGenerics nlme]; }; - curatedMetagenomicData = derive2 { name="curatedMetagenomicData"; version="1.11.1"; sha256="1gdnp5m8d3lz88hvsm3j2jq9w1di14ifls5l9q51jxm045yg0yjj"; depends=[AnnotationHub Biobase dplyr ExperimentHub magrittr S4Vectors tidyr]; }; + curatedMetagenomicData = derive2 { name="curatedMetagenomicData"; version="1.11.5"; sha256="1rcznh6h7vrwicf545jfxabrjwqf1npxqpp6hdfnf5bylkfrc1d9"; depends=[AnnotationHub Biobase dplyr ExperimentHub magrittr S4Vectors tidyr]; }; curatedOvarianData = derive2 { name="curatedOvarianData"; version="1.19.0"; sha256="0yvc1kpy4ql2sd467dggi6kpwxrvvqyasr0mgc61s1snmakvm06y"; depends=[affy BiocGenerics]; }; - curatedTCGAData = derive2 { name="curatedTCGAData"; version="1.3.3"; sha256="0khdg080c5ivirh84w1w6pvl9g4yi8i8f4sl82q3a2nwldqswghz"; depends=[AnnotationHub ExperimentHub MultiAssayExperiment S4Vectors]; }; + curatedTCGAData = derive2 { name="curatedTCGAData"; version="1.3.5"; sha256="01m4kld5cp0ff5wlwk2wln15vyjxgahzbk3xkzlg81yvs67ai2vr"; depends=[AnnotationHub ExperimentHub MultiAssayExperiment S4Vectors]; }; davidTiling = derive2 { name="davidTiling"; version="1.21.0"; sha256="18ivz1z0il8s9sk6c5mzgipsbs8xswbq7swwm422ji1yp75lkd9p"; depends=[Biobase GO_db tilingArray]; }; - derfinderData = derive2 { name="derfinderData"; version="0.115.0"; sha256="1xvvcbsbmrkri2nl7g1wpbbsa7wn49dj85xwxbsf8yffmisxb09k"; depends=[]; }; + derfinderData = derive2 { name="derfinderData"; version="1.99.0"; sha256="1dv6j91c9xs19pynza54gs127qqf5xk66rwin6rby0dcv58ng6s4"; depends=[]; }; diffloopdata = derive2 { name="diffloopdata"; version="1.9.0"; sha256="12a5338djyhg94q7wdahij4c9dnrx5qx04a1g9304wpk5z6cmxni"; depends=[]; }; diggitdata = derive2 { name="diggitdata"; version="1.13.0"; sha256="09b1mk68mg3jqf63c54xdh805vd79hbnnh02rf6qb3pq6w9b6z64"; depends=[Biobase viper]; }; dressCheck = derive2 { name="dressCheck"; version="0.19.0"; sha256="0k3h5i86345xx0d31qim1d1aw25axwy48hiq717fbnz2mpwsggj7"; depends=[Biobase]; }; @@ -224,11 +240,11 @@ in with self; { etec16s = derive2 { name="etec16s"; version="1.9.0"; sha256="0ljn90gf4sm7615xw25dil15kgf81gl0hvbp24snx4nbflnhns4q"; depends=[Biobase metagenomeSeq]; }; faahKO = derive2 { name="faahKO"; version="1.21.0"; sha256="19dxcf3yfgy8h8xn76h7x2ihvgy90923a28j3b2k972r84zzy7gk"; depends=[xcms]; }; fabiaData = derive2 { name="fabiaData"; version="1.19.0"; sha256="104c70pp9cnkx3y2mm6yxj4vj6k2mqrhw1n2cibhxnnqnl2lnwnr"; depends=[Biobase]; }; - facopy_annot = derive2 { name="facopy.annot"; version="0.115.0"; sha256="0aribb9b0rjd2xlxchbsjq3darg6klhsc8ajpa34m0rldkp3nzrl"; depends=[]; }; + facopy_annot = derive2 { name="facopy.annot"; version="1.1.0"; sha256="0snc9v8jy3dnxidk7g9lppxcp35flgdgp132sap8qkh6d1qc2rwd"; depends=[]; }; facsDorit = derive2 { name="facsDorit"; version="1.23.0"; sha256="0xxdz1xfb661pnrqji6vxsmmr90h1v1i195k9gb4dll6hwbq0n11"; depends=[prada]; }; ffpeExampleData = derive2 { name="ffpeExampleData"; version="1.19.0"; sha256="0jjaj492k4akc30yvr4q8y31wdi152iq5s3pl5i10sl9xrbg80hj"; depends=[lumi]; }; fibroEset = derive2 { name="fibroEset"; version="1.23.0"; sha256="1g22av8zj4nq9prnps7zgrzvva9d5a6h016llg0brpf9qjpg58p3"; depends=[Biobase]; }; - fission = derive2 { name="fission"; version="0.115.0"; sha256="1wx3ama4pdklyrjb54ww69ig554iv2c7j568zpxdywclg38z6pms"; depends=[SummarizedExperiment]; }; + fission = derive2 { name="fission"; version="1.1.0"; sha256="04rwbx0dd6fjyg76jw62vimllq40lb432bzmpf051x9gjqfyx0v2"; depends=[SummarizedExperiment]; }; flowFitExampleData = derive2 { name="flowFitExampleData"; version="1.17.0"; sha256="1ahg5g9ypxbhm7jrsbq1hjk5r5fmgvirawfd2xqfiaw5x9pkmrai"; depends=[flowCore]; }; flowPloidyData = derive2 { name="flowPloidyData"; version="1.7.0"; sha256="0f3cnq2s215a6wrz2cbp90219smvhr4zsvl02wbd40xb8902zhdc"; depends=[]; }; flowQBData = derive2 { name="flowQBData"; version="1.7.0"; sha256="1xla98i06j1qi2w88x1v8agvqcljzwxfcxakw0fl6phwl07hz9na"; depends=[]; }; @@ -245,8 +261,8 @@ in with self; { geuvStore2 = derive2 { name="geuvStore2"; version="1.11.0"; sha256="1ggac70x9pblbnzm6wg6rpmbgrkf802b2vgnfah1516grx0dwrkd"; depends=[BatchJobs GenomicRanges gQTLBase]; }; golubEsets = derive2 { name="golubEsets"; version="1.23.0"; sha256="1h45rwz6z4wgibbyafv8946vfs303km7ixcradml4ymbpwibp4ib"; depends=[Biobase]; }; grndata = derive2 { name="grndata"; version="1.13.0"; sha256="1ybgk5nf9nqrmw4mchpf183zyik6szzsm2cxh619fv27f0i3hjzk"; depends=[]; }; - gskb = derive2 { name="gskb"; version="1.13.0"; sha256="0gac903pldny2p1fv3rhxr9v24iznnrz17xhdd8z01rsy0yvxdql"; depends=[]; }; - h5vcData = derive2 { name="h5vcData"; version="1.115.0"; sha256="0viw7na4wqscaj0vijharvdj8mvwm0mxw0b2gm3slb9crkmksra7"; depends=[]; }; + gskb = derive2 { name="gskb"; version="1.13.1"; sha256="1jpl7vm2r28bf70mv2sy0dkdn6yn27w96ja2a0yynbpd509v8fwg"; depends=[]; }; + h5vcData = derive2 { name="h5vcData"; version="2.1.0"; sha256="036bvqd8glpk2armbv42wxv28k6rqg301l7i04wp85d94ipgn6yk"; depends=[]; }; hapmap100khind = derive2 { name="hapmap100khind"; version="1.23.0"; sha256="07r1nsl92awkkw41midkb9iv4c93my7c222li2f4mym8hn4ahn8p"; depends=[]; }; hapmap100kxba = derive2 { name="hapmap100kxba"; version="1.23.0"; sha256="0dvb3b2ls7g66vsv9qzl29kkjmdd6mwrhqxzj0a1d7qnkg48kgy1"; depends=[]; }; hapmap500knsp = derive2 { name="hapmap500knsp"; version="1.23.0"; sha256="0jqyvd1khz84l1qw31xk2szb9ycsp76yrs1h81ahg64sslygnfg0"; depends=[]; }; @@ -256,12 +272,12 @@ in with self; { harbChIP = derive2 { name="harbChIP"; version="1.19.0"; sha256="1566kxfblk6z4dia4f3gl3v0dsz8lx343nlflbp2wfb6gd314dl6"; depends=[Biobase Biostrings IRanges]; }; healthyFlowData = derive2 { name="healthyFlowData"; version="1.19.0"; sha256="052kvg8gvfbqc4fpr8np1q9li7f52daq1rndpg7zmc5zn4nqjzrn"; depends=[flowCore]; }; hgu133abarcodevecs = derive2 { name="hgu133abarcodevecs"; version="1.19.0"; sha256="1c113f0aj51mdvdizi6m2wmm0v7zxsa3pkp3bjq2426v449qr3ls"; depends=[]; }; - hgu133plus2CellScore = derive2 { name="hgu133plus2CellScore"; version="1.1.0"; sha256="05y00zzwflkkqblf811k5pxdcc9ivmvv9znlvsa232dkk4f1fnvy"; depends=[Biobase]; }; + hgu133plus2CellScore = derive2 { name="hgu133plus2CellScore"; version="1.1.1"; sha256="1h1n76j6l0nqqf18a5w5c8vmjd579jdh2ix84j70s30nkzbyxhyw"; depends=[Biobase]; }; hgu133plus2barcodevecs = derive2 { name="hgu133plus2barcodevecs"; version="1.19.0"; sha256="005llh7vpfc01qbq1wnq1nribqgh1kj7mw0rz59dsmr92czm7lbi"; depends=[]; }; hgu2beta7 = derive2 { name="hgu2beta7"; version="1.21.0"; sha256="1d80nxbf8ffmh7ipvxw2smvhgq4xvjhnhmwpwmkwn30yghrm46wj"; depends=[]; }; hmyriB36 = derive2 { name="hmyriB36"; version="1.17.0"; sha256="1s1gsysv8wsk9fzd34fjw2rp6jk8nysg1wd6dhay5mqphv92abkh"; depends=[Biobase GGBase]; }; humanStemCell = derive2 { name="humanStemCell"; version="0.21.0"; sha256="02y71ydwlygn6yickjx3gjsmrhp6dnvqk5319is70gwd214466r1"; depends=[Biobase hgu133plus2_db]; }; - iontreeData = derive2 { name="iontreeData"; version="1.17.1"; sha256="171gx10sfmpvwlv8ww5ckgc71y10lips3ws6v566amsdysafy82y"; depends=[]; }; + iontreeData = derive2 { name="iontreeData"; version="1.17.2"; sha256="1y3jawc5rs1fhv90yygkjghp1ir4zw540hi2ncml4lm003d42ghq"; depends=[]; }; kidpack = derive2 { name="kidpack"; version="1.23.0"; sha256="1ib24nbvqgids10k1glvpswavnv0qd14nvx9bw13bk09vndagkyi"; depends=[Biobase]; }; leeBamViews = derive2 { name="leeBamViews"; version="1.17.0"; sha256="1mldlpdpnivfi60rnsbz7466jf9ssyfgb2xv9ipwc8nlmszd6g45"; depends=[Biobase BSgenome GenomicAlignments GenomicRanges Rsamtools]; }; leukemiasEset = derive2 { name="leukemiasEset"; version="1.17.0"; sha256="15c31vzfn83pfjj8bmvg4sl0hynlvaz2wcg3fzlxmlpbf6b5rqd7"; depends=[Biobase]; }; @@ -270,8 +286,9 @@ in with self; { lydata = derive2 { name="lydata"; version="1.7.0"; sha256="0lq17l0klsn081m2nd9hrx50nxksvf7186drby66qvq6bhw3vhms"; depends=[]; }; mAPKLData = derive2 { name="mAPKLData"; version="1.13.0"; sha256="1h4x00a7rziqm3cqkddpp7ahrb36045yq71lskdjyp43k066jplw"; depends=[]; }; mCSEAdata = derive2 { name="mCSEAdata"; version="1.1.0"; sha256="0rcfyk6mwlxgkk7q40djbcbd4kx4vyy79h6dxb37zd7mpzxj03nx"; depends=[]; }; - mammaPrintData = derive2 { name="mammaPrintData"; version="1.17.0"; sha256="0gfhiz8wqdxx56an3yp5jagsr7bx131lia86yycvhyaylsj0pv7i"; depends=[]; }; + mammaPrintData = derive2 { name="mammaPrintData"; version="1.17.2"; sha256="0015cz3czxzzrx7ba8lqr1a5i4nh1mns114br660y9d32j1nsw0f"; depends=[]; }; maqcExpression4plex = derive2 { name="maqcExpression4plex"; version="1.25.0"; sha256="14m82492wb7jmqwjllnqak9rivyky1prcqgp1yn0g05c406fj0r9"; depends=[]; }; + mcsurvdata = derive2 { name="mcsurvdata"; version="0.99.4"; sha256="0kv2gq9vr0z2sg8v7mv0ky66gvwf2hbaisw2g02a81bzhjvyjky8"; depends=[AnnotationHub Biobase ExperimentHub]; }; metaMSdata = derive2 { name="metaMSdata"; version="1.17.0"; sha256="0j6h0s75w50jp3lcfs5cilqaqhhinlfn9c6zlpki6906fj1q6dxx"; depends=[]; }; methyvimData = derive2 { name="methyvimData"; version="1.3.0"; sha256="0jacj9jyqs5x11xds6bindab6q96br95r37dxmgxw5gxl9lcn6ql"; depends=[minfi]; }; miRNATarget = derive2 { name="miRNATarget"; version="1.19.0"; sha256="05x4vl8x2brm3bj04kddzcqjnm72jw29prmcwr1ildbaadmzh3fg"; depends=[Biobase]; }; @@ -284,12 +301,12 @@ in with self; { mosaicsExample = derive2 { name="mosaicsExample"; version="1.19.0"; sha256="17xvlaxlw6jn7w81dyg74n84nny6apaxv8b7qbv7gcyil3h2xr7f"; depends=[]; }; mouse4302barcodevecs = derive2 { name="mouse4302barcodevecs"; version="1.19.0"; sha256="1y7vkiqp4mkf16mpl5yl1jzmh1fv67d6k4i8qfi1lm68q2av9ggv"; depends=[]; }; msPurityData = derive2 { name="msPurityData"; version="1.9.0"; sha256="0z7gs75bci301mhhp9j8lxpivjns2bmr51vsz04d4k308j19w1wv"; depends=[]; }; - msd16s = derive2 { name="msd16s"; version="0.115.0"; sha256="1gspbva55x3bz2xzgdm9yfif0rgbd9gz9alswh1cy1kj99b0qk54"; depends=[Biobase metagenomeSeq]; }; + msd16s = derive2 { name="msd16s"; version="1.1.0"; sha256="09zjzad3blq6i1m6fnkfjpllnvjn9vlrlc075gcm2gpwcx4w775a"; depends=[Biobase metagenomeSeq]; }; msdata = derive2 { name="msdata"; version="0.21.0"; sha256="1srm1djnzfrj6klzxm2s721glk75lakb2428arqn3bm8vzvqw5vy"; depends=[]; }; - msqc1 = derive2 { name="msqc1"; version="1.9.0"; sha256="0qdn1n6nisabv1iq8xqv3h14vyjwpc8576gl88km0kfd6pwwyij2"; depends=[lattice]; }; + msqc1 = derive2 { name="msqc1"; version="1.9.1"; sha256="041fz9md3q95p1cwc7bcqam2z555sin2ib7ryssp79hp8iibx50g"; depends=[lattice]; }; mtbls2 = derive2 { name="mtbls2"; version="1.11.0"; sha256="1ismd5yp3vgj1cqp4y92gy5z856bs6sy3fgbigjjba2rrb3m4k1z"; depends=[]; }; mvoutData = derive2 { name="mvoutData"; version="1.17.0"; sha256="13kakn04xrngx9m80m1gqwdx3f75qixy6h9y0jvh16jk49kdnxcd"; depends=[affy Biobase lumi]; }; - pRolocdata = derive2 { name="pRolocdata"; version="1.19.1"; sha256="1bh5qq8q0ar380nbci4y2bij19imgb5b7q5yf71mmlsxbk3284fz"; depends=[Biobase MSnbase]; }; + pRolocdata = derive2 { name="pRolocdata"; version="1.19.5"; sha256="0gci5k1wxmnwy76nhnpjm9hysxpzjz29xw8j8srp96zn1bskaayi"; depends=[Biobase MSnbase]; }; parathyroidSE = derive2 { name="parathyroidSE"; version="1.19.0"; sha256="1dmnm348yxa9p6lnia4iiil1s4jkxj1n83frhml06brnqymbb9wn"; depends=[SummarizedExperiment]; }; pasilla = derive2 { name="pasilla"; version="1.9.0"; sha256="09rzh3w8nki9gqsk3pznk867ipg7s7imz7ma67cl0rh8pz2vg05i"; depends=[]; }; pasillaBamSubset = derive2 { name="pasillaBamSubset"; version="0.19.0"; sha256="0d2b4qav1m0whr7gwn2h2962qd72i3fc0y9c36k6nxr7jyfmv1jj"; depends=[]; }; @@ -299,7 +316,7 @@ in with self; { pcaGoPromoter_Rn_rn4 = derive2 { name="pcaGoPromoter.Rn.rn4"; version="1.17.0"; sha256="1qz6saflpsa9naj536k7ciqks95hb6l1z2v6srclqq7b45465h1b"; depends=[]; }; pcxnData = derive2 { name="pcxnData"; version="2.3.0"; sha256="1whw0wrfq1dfbxpfcz9z749dh27fadxmwp3dln945qh0nrjli6zc"; depends=[]; }; pd_atdschip_tiling = derive2 { name="pd.atdschip.tiling"; version="0.19.0"; sha256="1rfp34332p0fbx9yfb87rlhwwzjy1pm3zf372pvhv1r7qm8w3dyh"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pepDat = derive2 { name="pepDat"; version="0.115.0"; sha256="0rzwyq7aj3rf6sghybsn27vimlqv8z78bq5xs5jibjvwy697xczn"; depends=[GenomicRanges]; }; + pepDat = derive2 { name="pepDat"; version="1.1.0"; sha256="0yqlsdzjqwdvjfy7p6rls2xy5bph75pivkvizj575pmagdviv882"; depends=[GenomicRanges]; }; plasFIA = derive2 { name="plasFIA"; version="1.9.0"; sha256="0ivyvrx2wmr9wsi852h3fdkbc8qrxhx1gf21aiazlygz3x796fml"; depends=[proFIA]; }; ppiData = derive2 { name="ppiData"; version="0.19.0"; sha256="0hglfcyzlz7j090qylilqxx9jhivk3ipkq6q0zn2grydrj0g0xib"; depends=[AnnotationDbi graph]; }; prebsdata = derive2 { name="prebsdata"; version="1.17.0"; sha256="1jccx76j7xqbl4660f0akh6bnvhcvpn1wkn2hchbv9w1s9ywy9pi"; depends=[]; }; @@ -310,37 +327,40 @@ in with self; { prostateCancerVarambally = derive2 { name="prostateCancerVarambally"; version="1.9.0"; sha256="02vg37vllda3yvw6lq7xggil6l3n7v4y37s2cqixqrrmnczzqb2z"; depends=[Biobase]; }; pumadata = derive2 { name="pumadata"; version="2.17.0"; sha256="0ag7kv1k9jaj943l0szxlk2qfx5mlpspwsrnnyxxcpi3s8r8nyn4"; depends=[affy Biobase oligo puma]; }; qPLEXdata = derive2 { name="qPLEXdata"; version="0.99.1"; sha256="05v19rlbskvy15504ys8x3s2hhbdzwnyz3dwjas6h0b7rs3d51p7"; depends=[dplyr knitr MSnbase qPLEXanalyzer]; }; - rRDPData = derive2 { name="rRDPData"; version="0.115.0"; sha256="1z334hpwrl3f23r7cyr6zr7niwmccmxpwzhydgwlimvkdg8yn2gv"; depends=[rRDP]; }; - rcellminerData = derive2 { name="rcellminerData"; version="2.3.0"; sha256="1qms5v7jpvncdkllcan0xnqxhbxsh3kij4hcin8m4xd470vnf0xs"; depends=[Biobase]; }; + rRDPData = derive2 { name="rRDPData"; version="1.1.0"; sha256="16xk33bry0203sr79lzs89pwzbqds29894fc2hjr9qs624wrzvnk"; depends=[rRDP]; }; + rcellminerData = derive2 { name="rcellminerData"; version="2.3.1"; sha256="1i149vpfm873nzykbxf93rkrmyjshri5xi7awmxf60yiwacbafkk"; depends=[Biobase]; }; restfulSEData = derive2 { name="restfulSEData"; version="1.3.0"; sha256="01vbzdx354qpl58lznn9938jn93rf9nikwjfmy1w33z5cmirc7ad"; depends=[ExperimentHub SummarizedExperiment]; }; rheumaticConditionWOLLBOLD = derive2 { name="rheumaticConditionWOLLBOLD"; version="1.19.0"; sha256="1bcn3s36w3asb2di8851wg67dpx3rwalw9php1sklzrbh2f7jazs"; depends=[]; }; sampleClassifierData = derive2 { name="sampleClassifierData"; version="1.5.0"; sha256="06p4cq30diwx5flxc31lw3k6z66y6villf99qq99f4ab5x3gad94"; depends=[SummarizedExperiment]; }; scRNAseq = derive2 { name="scRNAseq"; version="1.7.0"; sha256="15cxr52qakxhsbjnm8vl33qlwbvl3lghkrk4l2v0dih4mw4g65nb"; depends=[SummarizedExperiment]; }; seq2pathway_data = derive2 { name="seq2pathway.data"; version="1.13.0"; sha256="0z9dspkjvjn20q542bjq7xyc7fpy76y3ic01h14cvql42m0vhl53"; depends=[]; }; seqCNA_annot = derive2 { name="seqCNA.annot"; version="1.17.0"; sha256="0hz9vf8fplqm3gfrfiiirm0w6g9x6bjq7l96275aizbx3g6a80kb"; depends=[]; }; - seqc = derive2 { name="seqc"; version="1.15.0"; sha256="0xkc712swyr9w267vsbnyhpjif47mjbgkj52f0y4b2s7vs521h0s"; depends=[]; }; + seqc = derive2 { name="seqc"; version="1.15.2"; sha256="1bc4ibhb7wr08c794m1ljy3hz4fy0vikavg7g7y6l3rjfvlns7lk"; depends=[Biobase]; }; serumStimulation = derive2 { name="serumStimulation"; version="1.17.0"; sha256="153zq6qpk02mkk31v5sl129j50wiw9n8c7n28f39w0mzg93yjyv5"; depends=[]; }; - sesameData = derive2 { name="sesameData"; version="0.99.3"; sha256="0q9j82m0b9vpl7an4kqbbzlpj50qv47fbi7anj7kkxdk8w2ck0l3"; depends=[AnnotationHub curl ExperimentHub]; }; - seventyGeneData = derive2 { name="seventyGeneData"; version="1.17.0"; sha256="00fmvpvp2bi2cv0441bzchir91iz8ip077m350jhp99nzcj6khg3"; depends=[]; }; - shinyMethylData = derive2 { name="shinyMethylData"; version="0.115.0"; sha256="0d1sm0bcfwd7q644jdxp069q4qjbzrg44srm60knxhp1kbf2ll5i"; depends=[]; }; + sesameData = derive2 { name="sesameData"; version="0.99.5"; sha256="0y2xkxrbj5fla75rq4iysa5ckmvv6fnbi06nk372n0gyvi0v5w8d"; depends=[AnnotationHub curl ExperimentHub]; }; + seventyGeneData = derive2 { name="seventyGeneData"; version="1.17.3"; sha256="1aq5pzj70alv4kmi79kdyc9v0441gvfgibzf5j06zh6b2bc409x6"; depends=[]; }; + shinyMethylData = derive2 { name="shinyMethylData"; version="1.1.0"; sha256="1qd8193vvs22x8hfy70ih2m5gx4s46hd0fas9ann198vv4rhygxz"; depends=[]; }; simpIntLists = derive2 { name="simpIntLists"; version="1.17.0"; sha256="1cgr86ibyz4xmhsrmrr0qx8f1xhclw7q4mrrbr5znvy4nvhbzpz6"; depends=[]; }; stemHypoxia = derive2 { name="stemHypoxia"; version="1.17.0"; sha256="076h70m11z178q1v58rbb1731nskck64sr4w29x1jby8h87rqkvk"; depends=[]; }; stjudem = derive2 { name="stjudem"; version="1.21.0"; sha256="1ccr0zcqwffizqbd624j980kn40hmic2497mj2ws19chwqxaz24j"; depends=[]; }; synapterdata = derive2 { name="synapterdata"; version="1.19.0"; sha256="1yppixbw3pxsaag1zfsd39p78d5l8702ysxxjgnmi50ak0lrwb2w"; depends=[synapter]; }; - systemPipeRdata = derive2 { name="systemPipeRdata"; version="1.9.1"; sha256="0hix85s3m17f7xlj4n4qdhff799r4hf78bc5gbpi8djykmbg3glq"; depends=[BiocGenerics]; }; + systemPipeRdata = derive2 { name="systemPipeRdata"; version="1.9.4"; sha256="0k8nybycswz78l0v61nidnirw3i9k41f1150ssglxyhqsvxpn8xd"; depends=[BiocGenerics]; }; + tcgaWGBSData_hg19 = derive2 { name="tcgaWGBSData.hg19"; version="0.99.3"; sha256="16p36sailxw14f051c3k89gz2i9blky0vx961s36mmnd5sqn6skn"; depends=[bsseq ExperimentHub knitr]; }; tinesath1cdf = derive2 { name="tinesath1cdf"; version="1.19.0"; sha256="0mpj8j8s9380lf830b862k2rj1mpfa3vflkai5bacwnx9i3dbmnz"; depends=[]; }; tinesath1probe = derive2 { name="tinesath1probe"; version="1.19.0"; sha256="07fyj1vdpzkz8iw6d9bqxgi4482rvq0r945p3rxa5a0cvwcsh1xi"; depends=[AnnotationDbi]; }; tissueTreg = derive2 { name="tissueTreg"; version="1.1.0"; sha256="1whm1a9r5bmrdzqchv7qzgnxnclq1qbzqjv0p6f6d6y7mw3rr6f6"; depends=[]; }; tofsimsData = derive2 { name="tofsimsData"; version="1.9.0"; sha256="17pwxdik4phg1cc10ycp2j38n63l1rfna8pzz16j05858ig24lif"; depends=[]; }; - topdownrdata = derive2 { name="topdownrdata"; version="1.3.0"; sha256="095mhjpni166p351k50y0605gb3ydsrhdnf8i92w6q84qnl9dapw"; depends=[]; }; + topdownrdata = derive2 { name="topdownrdata"; version="1.3.0"; sha256="095mhjpni166p351k50y0605gb3ydsrhdnf8i92w6q84qnl9dapw"; depends=[topdownr]; }; tweeDEseqCountData = derive2 { name="tweeDEseqCountData"; version="1.19.0"; sha256="1gby12vp7b88h3g86r5r01lj86chs30q505qijv3zq769px7fd2g"; depends=[Biobase]; }; - tximportData = derive2 { name="tximportData"; version="1.9.0"; sha256="06jmawmj6sssjjp2jhfzwbzhp8lv2jwbgaaz9qfwbxhnscxzj3cj"; depends=[]; }; - vulcandata = derive2 { name="vulcandata"; version="1.3.0"; sha256="1b7wn4kvqlb4fww98505nwnwfj5knsivx9fzli5fda2k4vzf6d4x"; depends=[]; }; + tximportData = derive2 { name="tximportData"; version="1.9.2"; sha256="0j7nwkfrvli8wx3jvrfn1qygvzyzvmzlp5vq529ssqf6mka8i2r3"; depends=[]; }; + vulcandata = derive2 { name="vulcandata"; version="1.3.1"; sha256="1jgiryn6cpmbipaif5d5yhwrl692hc6nac5abjip31l0rqmf4qig"; depends=[]; }; waveTilingData = derive2 { name="waveTilingData"; version="1.17.0"; sha256="1w0wvnk4r7vvg9xvqmpmwzbp1sr7plg214d6wgdwgmp9bm785vxf"; depends=[]; }; yeastCC = derive2 { name="yeastCC"; version="1.21.0"; sha256="1kbhbqcab7p3p160xvgwka8gfhxnjl05p9hxb7jjixi4yr30dzvj"; depends=[Biobase]; }; yeastExpData = derive2 { name="yeastExpData"; version="0.27.0"; sha256="13vz99brk9bb10swlrisiiwilyjn6pl1z3arw47sahm7grw4sgpc"; depends=[graph]; }; yeastGSData = derive2 { name="yeastGSData"; version="0.19.0"; sha256="06gnrh6kll5rmdvhigrf7blyyap6dz517gkhx2ljvlbwwz1hd35l"; depends=[]; }; yeastNagalakshmi = derive2 { name="yeastNagalakshmi"; version="1.17.0"; sha256="0xq65383vmh1jnfxnfhrzfdhr5s0qzy0xb844d8lvmsn77mq7jpr"; depends=[]; }; + yeastRNASeq = derive2 { name="yeastRNASeq"; version="0.19.0"; sha256="0sy72a0dvqq75hg599nfq6rv9frjwmvzqyissksa4dpbm8n3q086"; depends=[]; }; + yri1kgv = derive2 { name="yri1kgv"; version="0.23.0"; sha256="08i7iz0shrhh3pnn88x3fnkpqrics4nq43fcwzkk1582j1spg8yr"; depends=[Biobase GGBase]; }; yriMulti = derive2 { name="yriMulti"; version="0.11.0"; sha256="0gsr2y94hfmjmpz37y7q80wnkhlz8q028qn7dwm15a5rvzvs8ccv"; depends=[dsQTL GenomeInfoDb GenomicFiles GenomicRanges geuvPack gQTLBase Homo_sapiens MultiAssayExperiment SummarizedExperiment VariantAnnotation]; }; - zebrafishRNASeq = derive2 { name="zebrafishRNASeq"; version="0.115.0"; sha256="11lmhpd94vywkir5m02qb7j278k7hjlp085xq9wgaxmr07vxzyy6"; depends=[]; }; + zebrafishRNASeq = derive2 { name="zebrafishRNASeq"; version="1.1.0"; sha256="1sfdzs0s0jjrm36v016zf4xbw2rl2gfibzbzvgj7vark30f8w960"; depends=[]; }; } diff --git a/pkgs/development/r-modules/bioc-packages.nix b/pkgs/development/r-modules/bioc-packages.nix index 78823c4f46880a3f0f2655882426d10cf41a2147..05715a99922b961f302f6fd0dd7e101221c9252a 100644 --- a/pkgs/development/r-modules/bioc-packages.nix +++ b/pkgs/development/r-modules/bioc-packages.nix @@ -6,11 +6,12 @@ { self, derive }: let derive2 = derive { biocVersion = "3.8"; }; in with self; { - ABAEnrichment = derive2 { name="ABAEnrichment"; version="1.11.3"; sha256="08rrz6binj0hilji6gkdmqvwj0hp1b9rk6jx10gvn6wi3hg1nv4n"; depends=[ABAData data_table GOfuncR gplots gtools Rcpp]; }; + ABAEnrichment = derive2 { name="ABAEnrichment"; version="1.11.7"; sha256="0gzv8nphchispdrlmbx28ps6k7g8ylqldf7p25pimjba700ydjdd"; depends=[ABAData data_table GOfuncR gplots gtools Rcpp]; }; ABSSeq = derive2 { name="ABSSeq"; version="1.35.2"; sha256="0x86y1j8h9ad4vyzadb4xngzfihz73jcy2qrn5d2bpigv3m3rar5"; depends=[limma locfit]; }; ABarray = derive2 { name="ABarray"; version="1.49.0"; sha256="1rnsk81lhybj612rb2b886al567m58ax77kng4ip43ivzd3yssil"; depends=[Biobase multtest]; }; + ACE = derive2 { name="ACE"; version="0.99.10"; sha256="1a2mkw04fdvdfdva0gwsh0d7xkg49gi7dhsxz8ban9g1kn1g5w6z"; depends=[Biobase ggplot2 QDNAseq]; }; ACME = derive2 { name="ACME"; version="2.37.0"; sha256="1ihpzaxhpdg8lvd30g9xhjhsil34s7w8w06cy04dp7zv117yda55"; depends=[Biobase BiocGenerics]; }; - ADaCGH2 = derive2 { name="ADaCGH2"; version="2.21.0"; sha256="107hm5klybm8lp12bjir6gjcka8a5q4c54nvq3sn0avvzcj5caf4"; depends=[aCGH bit cluster DNAcopy ff ffbase GLAD snapCGH tilingArray waveslim]; }; + ADaCGH2 = derive2 { name="ADaCGH2"; version="2.21.1"; sha256="0ph0glq1ngmhgh8vv1zdm0m6flfkp576fk7qdyb3prc5rc730yxr"; depends=[aCGH bit cluster DNAcopy ff ffbase GLAD snapCGH tilingArray waveslim]; }; AGDEX = derive2 { name="AGDEX"; version="1.29.0"; sha256="0bidzm02g5f4ivnrymg9m7kpmjlg93zv1alpcsjx6ssbaix42r33"; depends=[Biobase GSEABase]; }; AIMS = derive2 { name="AIMS"; version="1.13.0"; sha256="15ch50fw03q66d7x0asri8ff5xr82r8rxd46i80zij1fg27avkxa"; depends=[Biobase e1071]; }; ALDEx2 = derive2 { name="ALDEx2"; version="1.13.0"; sha256="01c4bjbybivjqq1hl9dpmndn3mfk595yyjjkljcxbza6wax99rd0"; depends=[BiocParallel GenomicRanges IRanges multtest S4Vectors SummarizedExperiment]; }; @@ -20,679 +21,728 @@ in with self; { ASAFE = derive2 { name="ASAFE"; version="1.7.0"; sha256="0p6q9zpfqf7cz1lb0cm75ddhhcrdf90dpblrxhn8hkh5wgn3yp0m"; depends=[]; }; ASEB = derive2 { name="ASEB"; version="1.25.0"; sha256="00wwdg07zgqbaparqail1pnffx5r63007rq65shlxda483f3ywr1"; depends=[]; }; ASGSCA = derive2 { name="ASGSCA"; version="1.15.0"; sha256="0f9mih8bhv4ibwqni7z94n4v3kz5cm2paqdp5c0y7hvg9i836gyl"; depends=[MASS Matrix]; }; - ASICS = derive2 { name="ASICS"; version="1.1.0"; sha256="0a81s0yhn4zb8jyq889sz94rf22mrmsnpika0j1hs1sc3h2li3v2"; depends=[BiocParallel ggplot2 gridExtra plyr quadprog ropls speaq SummarizedExperiment zoo]; }; + ASICS = derive2 { name="ASICS"; version="1.1.1"; sha256="18arka0aj4y82ngdx458ilnvxrv45bfjj6dz1wz28frsz7bzhry2"; depends=[BiocParallel ggplot2 gridExtra plyr quadprog ropls speaq SummarizedExperiment zoo]; }; ASSET = derive2 { name="ASSET"; version="1.99.0"; sha256="1c43xdlgqpmq192cxfbpsq6f767zlcmpm7am539673yr6fc8ql7i"; depends=[MASS msm rmeta]; }; - ASSIGN = derive2 { name="ASSIGN"; version="1.17.1"; sha256="06rzdkdq66sl0lxbr3mvw6ybgs2laxyx7iaqgmjwf96b2j869jqb"; depends=[ggplot2 gplots msm Rlab sva]; }; - ASpli = derive2 { name="ASpli"; version="1.7.0"; sha256="19i2says6d2sl160537vzvj9iz5zmrv6xlyprv0787n7yswssy6s"; depends=[AnnotationDbi BiocGenerics BiocStyle edgeR GenomicAlignments GenomicFeatures GenomicRanges Gviz IRanges Rsamtools S4Vectors]; }; - ATACseqQC = derive2 { name="ATACseqQC"; version="1.5.1"; sha256="15spnf3a5hangks4k07gyjcnr6cjzxim4zjrjjilyx6jmfc7wiib"; depends=[BiocGenerics Biostrings BSgenome ChIPpeakAnno GenomeInfoDb GenomicAlignments GenomicRanges GenomicScores IRanges KernSmooth limma motifStack preseqR randomForest Rsamtools rtracklayer S4Vectors]; }; - AUCell = derive2 { name="AUCell"; version="1.3.4"; sha256="1v53cq58jj3nvgrj7xrypmw0g4882yma950yc7k9189sdbbxxdm6"; depends=[data_table GSEABase mixtools R_utils shiny SummarizedExperiment]; }; + ASSIGN = derive2 { name="ASSIGN"; version="1.17.4"; sha256="01ly4vislijmaa6vfs4nsawhf3jv7xb5jaa7iaizl7gpm7jnv7bp"; depends=[ggplot2 gplots msm Rlab sva yaml]; }; + ASpli = derive2 { name="ASpli"; version="1.7.2"; sha256="1x30c1srl6sgjpl2milsc06ix5b8ds3kgz2h5wzg9wl4jsfswml3"; depends=[AnnotationDbi BiocGenerics BiocStyle edgeR GenomicAlignments GenomicFeatures GenomicRanges Gviz IRanges Rsamtools S4Vectors]; }; + ATACseqQC = derive2 { name="ATACseqQC"; version="1.5.7"; sha256="06aq30lj97xpxxm5f46qlnl2pik44hh4jr7wcbsvjyf3xx99k3za"; depends=[BiocGenerics Biostrings BSgenome ChIPpeakAnno GenomeInfoDb GenomicAlignments GenomicRanges GenomicScores IRanges KernSmooth limma motifStack preseqR randomForest Rsamtools rtracklayer S4Vectors]; }; + AUCell = derive2 { name="AUCell"; version="1.3.6"; sha256="1i88w2jkydspgiw6vdpi1bspajr1y8jwmlxakydm7ww8azib4cwl"; depends=[data_table GSEABase mixtools R_utils shiny SummarizedExperiment]; }; + AffiXcan = derive2 { name="AffiXcan"; version="0.99.15"; sha256="0d5y1s2d30rkwmnr206xjf9rdzn099kirh9pxn0qddjhxl6n6d6c"; depends=[BiocParallel MultiAssayExperiment SummarizedExperiment]; }; AffyCompatible = derive2 { name="AffyCompatible"; version="1.41.0"; sha256="1gxk7kggb29hhfqz2a1g6yqy8mbg0x7gvajnnqgamdggylg7zz32"; depends=[Biostrings RCurl XML]; }; AffyExpress = derive2 { name="AffyExpress"; version="1.47.0"; sha256="1ph5vgm6hxifdyg8v3vgcqwm7k1fh4d3jnf10i4p7x4gi00xycan"; depends=[affy limma]; }; AffyRNADegradation = derive2 { name="AffyRNADegradation"; version="1.27.0"; sha256="17m0sn1rb6485lvrpn677z3y540pc93ykbyjg1plrl3qby6nxc5q"; depends=[affy]; }; AgiMicroRna = derive2 { name="AgiMicroRna"; version="2.31.0"; sha256="1hxvi9hdx8shikljwbh60k4ylir2hdibkccqd5wr4hb08spnam4j"; depends=[affy affycoretools Biobase limma preprocessCore]; }; - AllelicImbalance = derive2 { name="AllelicImbalance"; version="1.19.0"; sha256="13cw6k6xgkillkj7jfgflgb42nfb85hj919yd1i0css4zi9gxd2w"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gridExtra Gviz IRanges lattice latticeExtra nlme Rsamtools S4Vectors seqinr SummarizedExperiment VariantAnnotation]; }; + AllelicImbalance = derive2 { name="AllelicImbalance"; version="1.19.1"; sha256="14wh237bkzkczvbsqfv4fsgd1plc7nn2p77a6gcb7pgwz1lbq9is"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gridExtra Gviz IRanges lattice latticeExtra nlme Rsamtools S4Vectors seqinr SummarizedExperiment VariantAnnotation]; }; + AnalysisPageServer = derive2 { name="AnalysisPageServer"; version="1.15.3"; sha256="1xq8cp8yhjnvrr7wp16zi24qjrwchx3l95w4302qh5hfngr3c8xn"; depends=[Biobase graph log4r rjson]; }; Anaquin = derive2 { name="Anaquin"; version="2.5.0"; sha256="1cqrm7pmirdd23dw8lvrdjfkjp6rgx15s8h88jbilcv7qajg32jc"; depends=[DESeq2 ggplot2 knitr locfit plyr qvalue ROCR]; }; - AneuFinder = derive2 { name="AneuFinder"; version="1.9.0"; sha256="1b0rrnxb8ldw9mxva42m0jj6r2xjn91rnrw409dmk365j8nxva2f"; depends=[AneuFinderData bamsignals Biostrings cowplot DNAcopy doParallel ecp foreach GenomeInfoDb GenomicAlignments GenomicRanges ggdendro ggplot2 ggrepel IRanges mclust ReorderCluster reshape2 Rsamtools S4Vectors]; }; + AneuFinder = derive2 { name="AneuFinder"; version="1.9.1"; sha256="0grk4npv8lkf71s9nacmz29g87f7avrfsyb7lpljpg8ndq9cddx3"; depends=[AneuFinderData bamsignals Biostrings cowplot DNAcopy doParallel ecp foreach GenomeInfoDb GenomicAlignments GenomicRanges ggdendro ggplot2 ggrepel IRanges mclust ReorderCluster reshape2 Rsamtools S4Vectors]; }; AnnotationDbi = derive2 { name="AnnotationDbi"; version="1.43.1"; sha256="150mxlr5fcid4vnv8gh0imr9y9lzgyxrmvzmah4l8kg7r5rllm6k"; depends=[Biobase BiocGenerics DBI IRanges RSQLite S4Vectors]; }; AnnotationFilter = derive2 { name="AnnotationFilter"; version="1.5.2"; sha256="12lkv4dg25r5p77s84xzyh3aw8pybcdrkvqf21n8xv41gxpycdkq"; depends=[GenomicRanges lazyeval]; }; - AnnotationForge = derive2 { name="AnnotationForge"; version="1.23.0"; sha256="07b8m6g4zm1lj6pxscjyg7b39km8wx68jiqimdd7ddkzj9xqyvg8"; depends=[AnnotationDbi Biobase BiocGenerics DBI RCurl RSQLite S4Vectors XML]; }; + AnnotationForge = derive2 { name="AnnotationForge"; version="1.23.4"; sha256="1q0j4nn6hb9h22cnqdgqb89710j86kiayyaf98n47pcdyb96024d"; depends=[AnnotationDbi Biobase BiocGenerics DBI RCurl RSQLite S4Vectors XML]; }; AnnotationFuncs = derive2 { name="AnnotationFuncs"; version="1.31.0"; sha256="1sf2afh9s94k1j9xx7csv7k1cah52s8ks7bhjr13m5c2dad3df1f"; depends=[AnnotationDbi DBI]; }; - AnnotationHub = derive2 { name="AnnotationHub"; version="2.13.1"; sha256="1zhnadp24h7hxjgdgp4x4c2iwnciw6gvi6ycxbql1yilqr3ip6w0"; depends=[AnnotationDbi BiocGenerics BiocInstaller curl httr interactiveDisplayBase RSQLite S4Vectors yaml]; }; - AnnotationHubData = derive2 { name="AnnotationHubData"; version="1.11.1"; sha256="1s7bfmynwx6y555bsxp3cgkfa3gnc0ll476qydszw4agspp8wyn9"; depends=[AnnotationDbi AnnotationForge AnnotationHub Biobase BiocGenerics BiocInstaller biocViews Biostrings DBI futile_logger GenomeInfoDb GenomicFeatures GenomicRanges GEOquery IRanges jsonlite OrganismDbi rBiopaxParser RCurl Rsamtools RSQLite rtracklayer S4Vectors XML]; }; - ArrayExpress = derive2 { name="ArrayExpress"; version="1.41.0"; sha256="1xac01vhc8cdx7cp32qw4cfqyl20my5wdw3jf9mwb6qybjk557w7"; depends=[Biobase limma oligo XML]; }; + AnnotationHub = derive2 { name="AnnotationHub"; version="2.13.10"; sha256="087nk0wmkl3k7i00v9lbxq44gzj7dnyjahbhrq3zjx6qmg4l8dia"; depends=[AnnotationDbi BiocGenerics BiocManager curl httr interactiveDisplayBase RSQLite S4Vectors yaml]; }; + AnnotationHubData = derive2 { name="AnnotationHubData"; version="1.11.14"; sha256="0056p06iyw81pzyy52ydgzibqin84xrmsn5jyaa9a6qs3agm62h6"; depends=[AnnotationDbi AnnotationForge AnnotationHub Biobase BiocGenerics BiocManager biocViews Biostrings DBI futile_logger GenomeInfoDb GenomicFeatures GenomicRanges IRanges jsonlite OrganismDbi rBiopaxParser RCurl Rsamtools RSQLite rtracklayer S4Vectors XML]; }; + ArrayExpress = derive2 { name="ArrayExpress"; version="1.41.1"; sha256="0x5fvbp959x0pczb8qmy70npdx6p8km5aq6jbfmna5d5l8azd11q"; depends=[Biobase limma oligo XML]; }; ArrayExpressHTS = derive2 { name="ArrayExpressHTS"; version="1.31.0"; sha256="16j2a1qyhykzyqggfwaxvp4ay6l9ckimd4djh1qdp3ayqaign04r"; depends=[Biobase BiocGenerics biomaRt Biostrings bitops DESeq edgeR GenomicRanges Hmisc IRanges R2HTML RColorBrewer rJava Rsamtools sampling sendmailR ShortRead snow svMisc XML]; }; ArrayTV = derive2 { name="ArrayTV"; version="1.19.0"; sha256="1swim5w679hskgwfdm9fbfdwhlra7wp4fgsl38vmainayna90xw9"; depends=[DNAcopy foreach IRanges oligoClasses S4Vectors]; }; ArrayTools = derive2 { name="ArrayTools"; version="1.41.0"; sha256="1pkv72pkiqxjb0f642p7gdc0gfr7xg9vc96awi149a5z71bbykli"; depends=[affy Biobase limma xtable]; }; + AssessORF = derive2 { name="AssessORF"; version="0.99.21"; sha256="1k2b3psllayv8rwgc7jhhyr73apd51wbwgfhn1lawfvpn2k07gqr"; depends=[Biostrings DECIPHER GenomicRanges IRanges]; }; BAC = derive2 { name="BAC"; version="1.41.0"; sha256="0jk4drgs8w1fvarkhm4sbkm9ls6vh67vja9f2f29p4n0ykgf06y2"; depends=[]; }; BADER = derive2 { name="BADER"; version="1.19.0"; sha256="1y2lw5f6l32q3p3bral7bz2h57fvd7mpj00q4ds6l3y8j8grp3vf"; depends=[]; }; - BAGS = derive2 { name="BAGS"; version="2.21.0"; sha256="1j4284wvpabpzvb3khslfraz6wz5yznv9gsly5xaskximq1i1h74"; depends=[Biobase breastCancerVDX]; }; - BASiCS = derive2 { name="BASiCS"; version="1.3.3"; sha256="0rljf429zjglh7an6m09m0d8skykciksh2k8vjc6jm3rbsl4j1k5"; depends=[BiocGenerics coda data_table ggplot2 KernSmooth MASS matrixStats Rcpp RcppArmadillo S4Vectors scran SingleCellExperiment SummarizedExperiment testthat]; }; - BBCAnalyzer = derive2 { name="BBCAnalyzer"; version="1.11.0"; sha256="0nma095v38ysx0gjjrp6xslwmi78kgqqzqlmcvbf61qgbpggnqbj"; depends=[Biostrings GenomicRanges IRanges Rsamtools SummarizedExperiment VariantAnnotation]; }; + BAGS = derive2 { name="BAGS"; version="2.21.2"; sha256="14h103ycmxwpa02binhla0ys5fls2whdgjqj4g40pv96nj5kpwav"; depends=[Biobase breastCancerVDX]; }; + BASiCS = derive2 { name="BASiCS"; version="1.3.24"; sha256="0rxvwpnfvw3nbr8rbrm64hzxx1vzq7rq9jaq20x1nrkkx46gj5s7"; depends=[BiocGenerics coda data_table ggplot2 KernSmooth MASS matrixStats Rcpp RcppArmadillo S4Vectors scran SingleCellExperiment SummarizedExperiment testthat]; }; + BBCAnalyzer = derive2 { name="BBCAnalyzer"; version="1.11.1"; sha256="1gzivdxz02d27pkad6h6k0n1damph0vncslx70s3h6ypcb3g731j"; depends=[Biostrings GenomicRanges IRanges Rsamtools SummarizedExperiment VariantAnnotation]; }; BCRANK = derive2 { name="BCRANK"; version="1.43.0"; sha256="06082ki14mb4xrbx32lpi7q06bsnmjsc08ggx0si0fxdbf0584r5"; depends=[Biostrings]; }; - BEARscc = derive2 { name="BEARscc"; version="1.1.0"; sha256="169n512vaa23l3qaxxxa8x6zhy7jqmflsr43dn3k8qncwk1q7pml"; depends=[data_table ggplot2 SingleCellExperiment]; }; + BEARscc = derive2 { name="BEARscc"; version="1.1.1"; sha256="180r40a5f7fmck4jly7d4qrjpyb1xqgp8w6aasvx7qfd9vwqbfbx"; depends=[data_table ggplot2 SingleCellExperiment]; }; BEAT = derive2 { name="BEAT"; version="1.19.0"; sha256="1c3csghkdbqmaj36bg75fnx626rp2myykwc4hpxlij1sy8a9pjra"; depends=[Biostrings BSgenome GenomicRanges ShortRead]; }; - BEclear = derive2 { name="BEclear"; version="1.13.0"; sha256="0swsrlf6rdxkdbncf5f18zxfimmgiay42i12lg5apb5rk9in890c"; depends=[Matrix snowfall]; }; + BEclear = derive2 { name="BEclear"; version="1.13.11"; sha256="1c7bgnpj9wx839dhal4rlfamaxngqxdq2pm3paykqf2cjg278d37"; depends=[BiocParallel data_table futile_logger Matrix Rdpack]; }; BGmix = derive2 { name="BGmix"; version="1.41.0"; sha256="1v6rpn322g4qp3q3hisvi419nnslzpfqdp37bdc1spmsh88inb1j"; depends=[KernSmooth]; }; BHC = derive2 { name="BHC"; version="1.33.0"; sha256="18jpic1xk5gnxfw7r4hw0591lmrcncv412qd1q08l2nqw0a24895"; depends=[]; }; BLMA = derive2 { name="BLMA"; version="1.5.0"; sha256="1cpy2dx1da1bn0wc43fwva2akq473ww4nz241dq5xfrk2hwwkz91"; depends=[Biobase graph GSA limma PADOG ROntoTools]; }; - BPRMeth = derive2 { name="BPRMeth"; version="1.7.13"; sha256="1ypinfv1z6gw73whx0fjkz9h6sl6lzwfcsnfpjrwy94q59rpzyw0"; depends=[assertthat BiocStyle cowplot data_table doParallel e1071 earth foreach GenomicRanges ggplot2 IRanges kernlab magrittr MASS matrixcalc mvtnorm randomForest Rcpp RcppArmadillo S4Vectors truncnorm]; }; - BRAIN = derive2 { name="BRAIN"; version="1.27.0"; sha256="1pssh10b8pqy7f4hs1akws8lvikd0j9rwblrzsymvnnl5qf8rdqm"; depends=[Biostrings lattice PolynomF]; }; - BSgenome = derive2 { name="BSgenome"; version="1.49.1"; sha256="1i0qrm065407zvi454gjdx3rykabf5zwl18l23d7zvl5d9cwcpv2"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges IRanges Rsamtools rtracklayer S4Vectors XVector]; }; + BPRMeth = derive2 { name="BPRMeth"; version="1.7.14"; sha256="0gbklnxs0g236f839yq9p3x8yacgv4248yyp1fgazr6q9gcgqqdf"; depends=[assertthat BiocStyle cowplot data_table doParallel e1071 earth foreach GenomicRanges ggplot2 IRanges kernlab magrittr MASS matrixcalc mvtnorm randomForest Rcpp RcppArmadillo S4Vectors truncnorm]; }; + BRAIN = derive2 { name="BRAIN"; version="1.27.1"; sha256="04an1yqsfwkpwr31l4l21p09yr3jbdm4v7m89vg4q0rvlmha31ss"; depends=[Biostrings lattice PolynomF]; }; + BSgenome = derive2 { name="BSgenome"; version="1.49.5"; sha256="18z80kskhgmhar2njmpxba5fg4d6fz651n3bc4lvfxpvn3j2nh9f"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges IRanges Rsamtools rtracklayer S4Vectors XVector]; }; BUMHMM = derive2 { name="BUMHMM"; version="1.5.0"; sha256="0qs117jr903zyr55xql7793nr8scyqhfn9acnw4d29im2jwfhclq"; depends=[Biostrings devtools gtools IRanges stringi SummarizedExperiment]; }; BUS = derive2 { name="BUS"; version="1.37.0"; sha256="0rd0d1wm65q1x821l74y96w48dbqdlbd8gzz04fwz2lbpp4x6645"; depends=[infotheo minet]; }; + BUScorrect = derive2 { name="BUScorrect"; version="0.99.13"; sha256="1cbmr2xq1246cypjkf0l05h077bbrhigdhxx6fqkvzrgixw742r3"; depends=[gplots SummarizedExperiment]; }; BaalChIP = derive2 { name="BaalChIP"; version="1.7.0"; sha256="18jvr700mqfqalby53jhjskz2wrfbyl3x6bgx28yxzzg0hk7d897"; depends=[coda doBy doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges reshape2 Rsamtools scales]; }; - BadRegionFinder = derive2 { name="BadRegionFinder"; version="1.9.0"; sha256="0piq8lc4p23q2y3606kk9y52iwg7nc8jbnmicq44m2gnmp5b9r0m"; depends=[biomaRt GenomicRanges Rsamtools S4Vectors VariantAnnotation]; }; - BaseSpaceR = derive2 { name="BaseSpaceR"; version="1.25.0"; sha256="14p570w1ld2va2xjzk4aq64brx25h8mizcicyrvmlnppj7cwbpmm"; depends=[RCurl RJSONIO]; }; + BadRegionFinder = derive2 { name="BadRegionFinder"; version="1.9.1"; sha256="07m2lj91nk88rjjlqgrqvfwdmvvhsk406bq7wbd3a18hawljrcr6"; depends=[biomaRt GenomicRanges Rsamtools S4Vectors VariantAnnotation]; }; + BaseSpaceR = derive2 { name="BaseSpaceR"; version="1.25.1"; sha256="0636123345m2hgip2l7wpbppkav6nryskq3r8sdby09yw3xf8yny"; depends=[RCurl RJSONIO]; }; Basic4Cseq = derive2 { name="Basic4Cseq"; version="1.17.0"; sha256="0ynfj4x0hkjxxza8v85kda2a5rrmwzjh1am3ffnv1mvpi3dnb95l"; depends=[Biostrings BSgenome_Ecoli_NCBI_20080805 caTools GenomicAlignments GenomicRanges RCircos]; }; BasicSTARRseq = derive2 { name="BasicSTARRseq"; version="1.9.0"; sha256="074zndzd7dbz31khkn73a3jqfyacl56dd8b82zq5lykirw647zp4"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges S4Vectors]; }; - BatchQC = derive2 { name="BatchQC"; version="1.9.0"; sha256="1vcpjbalsvlcmrg2wxckpkk1qczwhs5c9yzp7wyk0jff9ayccd7w"; depends=[corpcor d3heatmap ggvis gplots knitr limma Matrix matrixStats MCMCpack moments pander reshape2 rmarkdown shiny sva]; }; + BatchQC = derive2 { name="BatchQC"; version="1.9.2"; sha256="0cg9ymwq08a3jxzpzwqgazz98868swp4ijiaz0h1msp8v30bqydd"; depends=[corpcor d3heatmap ggvis gplots knitr limma Matrix matrixStats MCMCpack moments pander reshape2 rmarkdown shiny sva]; }; BayesKnockdown = derive2 { name="BayesKnockdown"; version="1.7.0"; sha256="0ikq8bk4viw9kj55cci37cdicbmyq9p5fa0vxw0bsa9ichj47cl5"; depends=[Biobase]; }; BayesPeak = derive2 { name="BayesPeak"; version="1.33.0"; sha256="0grhyp7i834sj1j2kavpk2ydy0970gjcvllxy05l9vs9cilhczgp"; depends=[IRanges]; }; BeadDataPackR = derive2 { name="BeadDataPackR"; version="1.33.0"; sha256="0asbgmcidblxj82w5bv0g0c5l9w2nzyr7qparbxg2inxcqimsa37"; depends=[]; }; - BgeeDB = derive2 { name="BgeeDB"; version="2.7.0"; sha256="07y8jh5r6rvx083gdcy7hdlpazmaj17mrbcqi6ysj8j0ipjxsrgv"; depends=[Biobase data_table digest dplyr graph RCurl tidyr topGO]; }; - BiFET = derive2 { name="BiFET"; version="1.1.5"; sha256="0rghzii29k5sqm4bnf86mncly5gln9kn14nzjxb9ycpmls33nfx0"; depends=[GenomicRanges poibin]; }; - BiGGR = derive2 { name="BiGGR"; version="1.17.0"; sha256="1nsjg5lk87i0mrby23jzfxs80cipq2dra4gx2v3mxphiqixrn92i"; depends=[hyperdraw hypergraph LIM limSolve rsbml stringr]; }; - BiRewire = derive2 { name="BiRewire"; version="3.13.0"; sha256="10wgsw38774a6fzwhr98hxiangna3s1rb0i7dw2bvmkx9c6ldmbh"; depends=[igraph Matrix slam tsne]; }; + BgeeDB = derive2 { name="BgeeDB"; version="2.7.2"; sha256="0rk6kfy78xxsd8zbvs2gdklncz5dzr6wayndf3bh7nm575d8jnrd"; depends=[Biobase data_table digest dplyr graph RCurl tidyr topGO]; }; + BiFET = derive2 { name="BiFET"; version="1.1.8"; sha256="0h7lrhfjgxfchk4i1i6y65znr2dxh9zkiy9n6clvrby6aqrswgr3"; depends=[GenomicRanges poibin]; }; + BiGGR = derive2 { name="BiGGR"; version="1.17.1"; sha256="18d57ia7vzgrwc8nzqjp368s7a6hqckcskp807xmk239ggrk9iii"; depends=[hyperdraw hypergraph LIM limSolve rsbml stringr]; }; + BiRewire = derive2 { name="BiRewire"; version="3.13.3"; sha256="09i4mvpbfvnljvg87zgwawv5ahj7kaiqvwx7mlsqkrdzijclfqq3"; depends=[igraph Matrix slam tsne]; }; BiSeq = derive2 { name="BiSeq"; version="1.21.0"; sha256="12wnihb693dk6ri3hqcm7cjyy0r3dffvjcfybypl75zsj42k7zb7"; depends=[betareg Biobase BiocGenerics Formula GenomeInfoDb GenomicRanges globaltest IRanges lokern rtracklayer S4Vectors SummarizedExperiment]; }; BicARE = derive2 { name="BicARE"; version="1.39.0"; sha256="1gdglclrkrsxw7lks9rczhjy3ldsrl18qbk6h4f10d3rf6b147b1"; depends=[Biobase GSEABase multtest]; }; - BioCor = derive2 { name="BioCor"; version="1.5.1"; sha256="0wfd7sapzxj135wp6kga0xb8z5ycvvhwdwh1307sh0k8k8wb5pd9"; depends=[BiocParallel GSEABase Matrix]; }; + BioCor = derive2 { name="BioCor"; version="1.5.6"; sha256="1zy4yxwgx70f6sz09kva97p2gby4yjyrqn4zshrdr89npnk5h5rz"; depends=[BiocParallel GSEABase Matrix]; }; BioMVCClass = derive2 { name="BioMVCClass"; version="1.49.0"; sha256="01v6bzq8jsqd3p2cpg0hlfccqzkr9fk9zkby2dg1npwrf27x6j4g"; depends=[Biobase graph MVCClass Rgraphviz]; }; BioNet = derive2 { name="BioNet"; version="1.41.0"; sha256="039mzwvfamlxkqn9ipn7vab7qnnn0153sg7dcp4g5glfxgmqnngh"; depends=[AnnotationDbi Biobase graph igraph RBGL]; }; - BioNetStat = derive2 { name="BioNetStat"; version="1.1.1"; sha256="1jr1z0shh0cspqmg0dqwwqhsljvl53aay19qpss5a64ifas8mzmr"; depends=[BiocParallel ggplot2 Hmisc igraph knitr pathview pheatmap plyr psych RColorBrewer RJSONIO shiny shinyBS whisker yaml]; }; + BioNetStat = derive2 { name="BioNetStat"; version="1.1.2"; sha256="17iyf5k9mm3mqvw7vskk7vcmadrs4qxq69sx024j63ihiq6divkb"; depends=[BiocParallel ggplot2 Hmisc igraph knitr pathview pheatmap plyr psych RColorBrewer RJSONIO shiny shinyBS whisker yaml]; }; BioQC = derive2 { name="BioQC"; version="1.9.0"; sha256="0v9czgv6n57nczg2ijz78dfknvmlbxbdrsi8c90wiyxr888gkb3m"; depends=[Biobase Rcpp]; }; - BioSeqClass = derive2 { name="BioSeqClass"; version="1.39.0"; sha256="1390g5saw7jf6q7k5kavql595jw8xd8y53lwlfmxfgiapf2nvg36"; depends=[Biobase Biostrings class e1071 foreign ipred klaR nnet party randomForest rpart scatterplot3d tree]; }; - Biobase = derive2 { name="Biobase"; version="2.41.1"; sha256="0hfi88z32ma74mc2h0d8xx2m9pqwcwr77f6mfh21sqnkb5mqwsdm"; depends=[BiocGenerics]; }; + BioSeqClass = derive2 { name="BioSeqClass"; version="1.39.2"; sha256="1j9mbp6xdnm24a1vzwq3327dhm9nglydib73nrwcw1jn0am78yqv"; depends=[Biobase Biostrings class e1071 foreign ipred klaR nnet party randomForest rpart scatterplot3d tree]; }; + Biobase = derive2 { name="Biobase"; version="2.41.2"; sha256="11wda45crjk2v7zscrhrh0w30qdqvkxf6zcqyg7jqk833327ci0r"; depends=[BiocGenerics]; }; BiocCaseStudies = derive2 { name="BiocCaseStudies"; version="1.43.0"; sha256="0xdn0zrd034mxzc6khqfnsp0rynfpd7zbxhmcmj5j0h83m9kyfnw"; depends=[Biobase]; }; - BiocCheck = derive2 { name="BiocCheck"; version="1.17.15"; sha256="06wzf7j170bf9msnv61da70hlhv08k5lykwzachij1396514ypr6"; depends=[BiocInstaller biocViews codetools graph httr knitr optparse stringdist]; }; - BiocFileCache = derive2 { name="BiocFileCache"; version="1.5.2"; sha256="170dyswpaxwg8jhw99797n5haixk7pm657dj09ydv8zjb5jaqhz0"; depends=[DBI dbplyr dplyr httr rappdirs RSQLite]; }; + BiocCheck = derive2 { name="BiocCheck"; version="1.17.25"; sha256="1h1lwjpzmwiygfrh4gjh3mw7fjk0ync3xbvw5bl39ykgq9b1dw7h"; depends=[BiocManager biocViews codetools graph httr knitr optparse stringdist]; }; + BiocFileCache = derive2 { name="BiocFileCache"; version="1.5.9"; sha256="1prwqr9xrl47knyx1jddw5in1casj7xyz787qqqlf7xfp8z5kqyf"; depends=[curl DBI dbplyr dplyr httr rappdirs RSQLite]; }; BiocGenerics = derive2 { name="BiocGenerics"; version="0.27.1"; sha256="1v2vqhixnn4caanpnmd0pw7jnczfkc79wlb9c7v0kwpz9h79h023"; depends=[]; }; - BiocInstaller = derive2 { name="BiocInstaller"; version="1.31.1"; sha256="1cprnjbymb2r1z228nyg6bbnridazw6bh6yh0mcfxq6h0cd0ig8y"; depends=[]; }; - BiocOncoTK = derive2 { name="BiocOncoTK"; version="1.1.6"; sha256="01g7drd8c9082kvpw5xyxmans8mksw0rm1s6rv6ml6ibzbxjrz2z"; depends=[bigrquery ComplexHeatmap dplyr DT GenomicRanges httr IRanges magrittr rjson S4Vectors shiny]; }; - BiocParallel = derive2 { name="BiocParallel"; version="1.15.6"; sha256="1ifav2pl6szvs6a5nkkgsf7j70i496q2lsj73gb3li4krm6yslvf"; depends=[BH futile_logger snow]; }; - BiocSklearn = derive2 { name="BiocSklearn"; version="1.3.0"; sha256="1dh0w9h81ydnnwf7dx19an7pja3n511pw16yl0bgmqr8ng51lvwn"; depends=[BBmisc HDF5Array knitr reticulate SummarizedExperiment]; }; - BiocStyle = derive2 { name="BiocStyle"; version="2.9.3"; sha256="1ggbx5c94fr20mykkj3ghsia91c2jdi4yyhrm9jfwxdaxy9k8kfl"; depends=[bookdown knitr rmarkdown yaml]; }; + BiocInstaller = derive2 { name="BiocInstaller"; version="1.31.3"; sha256="10b20kbp8gqfq7fsdcgfpkghndn5aw8c1cj1l67a8a5qibbfq89x"; depends=[]; }; + BiocNeighbors = derive2 { name="BiocNeighbors"; version="0.99.22"; sha256="006map9pk5q4qk2zardgxgirlil4hhvw7vjs4js426qrxqqmhlxn"; depends=[BiocParallel Rcpp RcppAnnoy S4Vectors]; }; + BiocOncoTK = derive2 { name="BiocOncoTK"; version="1.1.22"; sha256="10dnfzxhhvnmkcpdrzwv8810ss3yljfbq0lswa1149ndqyanhdvj"; depends=[bigrquery ComplexHeatmap DBI dplyr DT GenomicFeatures GenomicRanges ggplot2 httr IRanges magrittr rjson S4Vectors shiny SummarizedExperiment]; }; + BiocParallel = derive2 { name="BiocParallel"; version="1.15.15"; sha256="0iqgcmgq1jzayalkym2s1zvblfrwvgp2rc7v09a6mm0hzgbxvh9y"; depends=[BH futile_logger snow]; }; + BiocPkgTools = derive2 { name="BiocPkgTools"; version="0.99.16"; sha256="1lw8llvhfp8vpy72y3dc8dy6xiq3yl71zfry4h1ag3kxh9c4snvh"; depends=[BiocManager dplyr DT htmltools htmlwidgets httr igraph jsonlite readr rex rvest stringr tibble tidyr xml2]; }; + BiocSklearn = derive2 { name="BiocSklearn"; version="1.3.2"; sha256="0zdakw0yrjkxvspc2sb0z70ipx7jrqcnf0br80nrkvg5sxkm5nd0"; depends=[BBmisc knitr reticulate SummarizedExperiment]; }; + BiocStyle = derive2 { name="BiocStyle"; version="2.9.6"; sha256="1b123p3id4ljqcg3xj9lr5x05k1wa67gcl5v2bfi7nv8i6221bn3"; depends=[BiocManager bookdown knitr rmarkdown yaml]; }; BiocVersion = derive2 { name="BiocVersion"; version="3.8.0"; sha256="1kyqzca8n7wggz6lfx7xj0i1h1s3rma15v11iycgkdka58443qqr"; depends=[]; }; - BiocWorkflowTools = derive2 { name="BiocWorkflowTools"; version="1.7.1"; sha256="04nxl3idhy3smyvp246vc28509i7hf5qv24zn366q012zdykywzr"; depends=[BiocStyle bookdown devtools git2r httr knitr rmarkdown rstudioapi stringr]; }; - Biostrings = derive2 { name="Biostrings"; version="2.49.0"; sha256="015yg11649nz6w0c8a6jsrjynh047phixssziid64rsff0gf13fv"; depends=[BiocGenerics IRanges S4Vectors XVector]; }; - BitSeq = derive2 { name="BitSeq"; version="1.25.0"; sha256="0ffqwdd5zjwcd819h3rg554c2drvi05l40ffg30p380azk0xkksp"; depends=[IRanges Rsamtools S4Vectors zlibbioc]; }; + BiocWorkflowTools = derive2 { name="BiocWorkflowTools"; version="1.7.5"; sha256="1k39zcfdwzddrfaakh3nchwc3xlq63x2dzybj7xj0xhjj14klyr1"; depends=[BiocStyle bookdown devtools git2r httr knitr rmarkdown rstudioapi stringr]; }; + Biostrings = derive2 { name="Biostrings"; version="2.49.2"; sha256="0fm0vfi5s7d0xzwanq5rrdh0fp394qnd7jcmlsib6naqjch0zqaf"; depends=[BiocGenerics IRanges S4Vectors XVector]; }; + BitSeq = derive2 { name="BitSeq"; version="1.25.2"; sha256="05vkx8wr53qfsyjcmfp31768qycmrcbanqfwh1x0l7456v0hmbcv"; depends=[IRanges Rsamtools S4Vectors zlibbioc]; }; BrainStars = derive2 { name="BrainStars"; version="1.25.0"; sha256="0svlrnd131m2lrpafxcpzbjqj3pvzcsi6azk1f4l2f21yimmx2iq"; depends=[Biobase RCurl RJSONIO]; }; - BridgeDbR = derive2 { name="BridgeDbR"; version="1.15.1"; sha256="0fd6v87qhv7mjmsw5xs6r3bs52h1axm150jp6vng4ph20jq8gicg"; depends=[RCurl rJava]; }; + BridgeDbR = derive2 { name="BridgeDbR"; version="1.15.2"; sha256="1rmdyh16qkhqad0xdhqi2vxzi1ga3gmxfl81nqnb5pm1vp0rr4ns"; depends=[RCurl rJava]; }; BrowserViz = derive2 { name="BrowserViz"; version="2.3.0"; sha256="0f4hayj2iinfqiwpl53nmnw0cfv9p6sz25ggwpz1pyib24n2n9b6"; depends=[BiocGenerics httpuv jsonlite]; }; BubbleTree = derive2 { name="BubbleTree"; version="2.11.0"; sha256="0a69azv8v67jfdyg9mfaf58g1v3b09brhr2fvgl2lq7d48gi0cbh"; depends=[Biobase BiocGenerics BiocStyle biovizBase dplyr e1071 GenomicRanges ggplot2 gridExtra gtable gtools IRanges limma magrittr plyr RColorBrewer WriteXLS]; }; BufferedMatrix = derive2 { name="BufferedMatrix"; version="1.45.0"; sha256="0qr9dsdh04msxva28n37shjk4j6a4m0i5v4plkk7qpvb6ccbvrf8"; depends=[]; }; BufferedMatrixMethods = derive2 { name="BufferedMatrixMethods"; version="1.45.0"; sha256="1v2yh5pvjc3x25nq6cdqazm1x80ir2qz4jlmssgd31n1bz8r4x48"; depends=[BufferedMatrix]; }; - CAFE = derive2 { name="CAFE"; version="1.17.0"; sha256="1rgb3wk41q1079i959fjr81jwqd8r3rj0n781hfxbn9b5kia5inq"; depends=[affy annotate Biobase biovizBase GenomicRanges ggbio ggplot2 gridExtra IRanges]; }; - CAGEfightR = derive2 { name="CAGEfightR"; version="1.1.0"; sha256="09hf2xla5dl9gh59aa024z23j5lnqdrnamf34fw0r2p394qfz9gz"; depends=[assertthat BiocGenerics BiocParallel GenomeInfoDb GenomicFeatures GenomicFiles GenomicRanges grr Gviz IRanges Matrix Matrix_utils pryr rtracklayer S4Vectors SummarizedExperiment]; }; + CAFE = derive2 { name="CAFE"; version="1.17.1"; sha256="057pw96g13h5sak0scqyn2qsfm3dqz7qmqrasjf4vnp2zz059blp"; depends=[affy annotate Biobase biovizBase GenomicRanges ggbio ggplot2 gridExtra IRanges]; }; + CAGEfightR = derive2 { name="CAGEfightR"; version="1.1.5"; sha256="0604b35q82x6brwmg31ks3k77r9f287fr4azgl0bcphj71g9ijc3"; depends=[assertthat BiocGenerics BiocParallel GenomeInfoDb GenomicFeatures GenomicFiles GenomicInteractions GenomicRanges grr Gviz InteractionSet IRanges Matrix Matrix_utils pryr rtracklayer S4Vectors SummarizedExperiment]; }; + CAGEr = derive2 { name="CAGEr"; version="1.23.5"; sha256="181vj5kmny36vdvyzvjpxvj7n0q35cq1nv28ph5v6i5xf6ymyj47"; depends=[beanplot BiocGenerics BiocParallel BSgenome data_table DelayedArray formula_tools GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gtools IRanges KernSmooth memoise MultiAssayExperiment plyr reshape Rsamtools rtracklayer S4Vectors som stringdist stringi SummarizedExperiment vegan VGAM]; }; CALIB = derive2 { name="CALIB"; version="1.47.0"; sha256="1j486knj1l7chda7gdlkkzrrs7vwi39brzkshj1zcsn87r9j1j09"; depends=[limma]; }; CAMERA = derive2 { name="CAMERA"; version="1.37.0"; sha256="0n0xvhcy3y84cq6q45ms56z4nrs6q762iqgxp266kpl93z16rw4v"; depends=[Biobase graph Hmisc igraph RBGL xcms]; }; - CAMTHC = derive2 { name="CAMTHC"; version="0.99.6"; sha256="02gv6vqahyy7fqy0vihqsvd811d65znfjz5jmshn03qp27av11wk"; depends=[apcluster Biobase BiocParallel corpcor DMwR geometry NMF pcaPP rJava SummarizedExperiment]; }; - CATALYST = derive2 { name="CATALYST"; version="1.5.3"; sha256="1b2gfqzb9bp4k830lyn9d87xhzcdqb2vrykihp36r96gj1g6hdg4"; depends=[Biobase circlize ComplexHeatmap ConsensusClusterPlus dplyr drc DT flowCore FlowSOM ggplot2 ggrepel gridExtra htmltools limma magrittr matrixStats nnls plotly RColorBrewer reshape2 Rtsne S4Vectors scales shiny shinyBS shinydashboard shinyjs SummarizedExperiment tidyr]; }; + CAMTHC = derive2 { name="CAMTHC"; version="0.99.7"; sha256="1m2qpf3ssn7h7qj96021kbg3h8sfkbggq4dfxd4xz3px8vra5q82"; depends=[apcluster Biobase BiocParallel corpcor DMwR geometry NMF pcaPP rJava SummarizedExperiment]; }; + CATALYST = derive2 { name="CATALYST"; version="1.5.9"; sha256="1xxa2sv7a75wr2py7ah8lwqhgrbbic25cq9lf3gb73iaid994fy9"; depends=[Biobase circlize ComplexHeatmap ConsensusClusterPlus dplyr drc DT flowCore FlowSOM ggplot2 ggrepel ggridges gridExtra htmltools limma magrittr Matrix matrixStats nnls plotly RColorBrewer reshape2 Rtsne S4Vectors scales shiny shinyBS shinydashboard shinyjs SummarizedExperiment tidyr]; }; CAnD = derive2 { name="CAnD"; version="1.13.0"; sha256="07ypm7zz4hf64q478b7s2q46m3imcs0kjc77gkwxky3ymsvid07y"; depends=[ggplot2 reshape]; }; CCPROMISE = derive2 { name="CCPROMISE"; version="1.7.0"; sha256="1yb8idgdka7psnwa7w94lsld8ghphhdz8kcyvp1na6l88lyc2iyi"; depends=[Biobase CCP GSEABase PROMISE]; }; - CEMiTool = derive2 { name="CEMiTool"; version="1.5.0"; sha256="0h45vf64fg0pkh73k2wplfi26w3j4rnh7gyfnx9ia5bkm0z7l2fj"; depends=[clusterProfiler data_table DT fgsea ggdendro ggplot2 ggpmisc ggrepel ggthemes gRbase gridExtra gtable htmltools igraph intergraph knitr matrixStats network pracma rmarkdown scales sna stringr WGCNA]; }; + CEMiTool = derive2 { name="CEMiTool"; version="1.5.1"; sha256="1jvnpinmyjcpss3wm7kchdksjc5a5a64vdymj9ada38q3j9ni3fd"; depends=[clusterProfiler data_table DT fgsea ggdendro ggplot2 ggpmisc ggrepel ggthemes gRbase gridExtra gtable htmltools igraph intergraph knitr matrixStats network pracma rmarkdown scales sna stringr WGCNA]; }; CFAssay = derive2 { name="CFAssay"; version="1.15.0"; sha256="06xq5rwbbgxknymn061ck1vyqlb8l715cpf7k40w3l4v95h02jiz"; depends=[]; }; CGEN = derive2 { name="CGEN"; version="3.17.0"; sha256="1i31ckwfw6nx0fpfg2g8zq83r6zykvkxfrqkib9kj4wvxx24kvcx"; depends=[mvtnorm survival]; }; - CGHbase = derive2 { name="CGHbase"; version="1.41.0"; sha256="0yvg2jjqs98lrrybpygc77npfj27h5mkdrh3y5mfd5s6jzvyc8pz"; depends=[Biobase marray]; }; + CGHbase = derive2 { name="CGHbase"; version="1.41.2"; sha256="1ncy4lxvzpbs3nrwdyk56scmirgi2a3byi6dcja35syqpw2hdqip"; depends=[Biobase marray]; }; CGHcall = derive2 { name="CGHcall"; version="2.43.0"; sha256="1r8df0xvnhzwhbg1l1wp474f85j6l1g2ivvzmqxcqr5va1clz6g9"; depends=[Biobase CGHbase DNAcopy impute snowfall]; }; CGHnormaliter = derive2 { name="CGHnormaliter"; version="1.35.0"; sha256="0bas6wmdw9h8ablm85ggbb776nfxrf4lpfvv5rkahd10b35y3x4b"; depends=[Biobase CGHbase CGHcall]; }; CGHregions = derive2 { name="CGHregions"; version="1.39.0"; sha256="0r3gvrinr7f5qn89v6rs5bxx4sjalsjl0f2cf6vzbzgnmdysarns"; depends=[Biobase CGHbase]; }; CHARGE = derive2 { name="CHARGE"; version="1.1.0"; sha256="05zqkiqnc82bmb580f16v6d02kfq55sdrm0nxk86h5kp1cs8fryk"; depends=[cluster diptest factoextra FactoMineR GenomicRanges IRanges matrixStats modes plyr SummarizedExperiment]; }; - CHRONOS = derive2 { name="CHRONOS"; version="1.9.0"; sha256="17zxbbdy1ibsj4991iazm6rny2x4xx7rzknkc6z348fzxk2m7g0x"; depends=[biomaRt circlize doParallel foreach graph openxlsx RBGL RCurl XML]; }; - CINdex = derive2 { name="CINdex"; version="1.9.0"; sha256="1rixd0fylffc77hlc7cig7viwdhdy9r68cb3qba16sd5ywbg74gs"; depends=[bitops dplyr GenomeInfoDb GenomicRanges gplots gridExtra IRanges png S4Vectors som stringr]; }; + CHRONOS = derive2 { name="CHRONOS"; version="1.9.2"; sha256="01r3zd0vq4qp40sxvcp7h23713addck5d463b3vyimz7y1x07cqv"; depends=[biomaRt circlize doParallel foreach graph openxlsx RBGL RCurl XML]; }; + CINdex = derive2 { name="CINdex"; version="1.9.1"; sha256="1g24rbbhpq90c6cqjx96pxz4vlj3kyxvc9ad3hibbkljr705rs77"; depends=[bitops dplyr GenomeInfoDb GenomicRanges gplots gridExtra IRanges png S4Vectors som stringr]; }; CMA = derive2 { name="CMA"; version="1.39.0"; sha256="05yx2rwnrzdsgbyv86iyy17qiz6sy91bl6y3qf29aid3yndawc1s"; depends=[Biobase]; }; CNAnorm = derive2 { name="CNAnorm"; version="1.27.0"; sha256="152cwha5mg66vc1ax6k2mwnahwj0cgcs3khii747y3xxn4p8m0z5"; depends=[DNAcopy]; }; - CNEr = derive2 { name="CNEr"; version="1.17.3"; sha256="0gf354j2vynrjl3afbifqkd276q2qz2ywwc7661gqxcjz26jirxq"; depends=[annotate BiocGenerics Biostrings DBI GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 GO_db IRanges KEGGREST poweRlaw R_utils readr reshape2 RSQLite rtracklayer S4Vectors XVector]; }; - CNORdt = derive2 { name="CNORdt"; version="1.23.0"; sha256="14iadllrhjc1jp4njlr88bhjyb84f3gnbwjzld4n5v8s8ra8xj3a"; depends=[abind CellNOptR]; }; - CNORfeeder = derive2 { name="CNORfeeder"; version="1.21.0"; sha256="1l1ij3r0rdywm0k47iy66v3sy0i23pr8zly1blyzpbxaqhmks3h1"; depends=[CellNOptR graph]; }; - CNORfuzzy = derive2 { name="CNORfuzzy"; version="1.23.0"; sha256="1z1fs64kd575hmmzxa7hx0lxkvd93mzdygw3h4g1sa2fyr9xycfb"; depends=[CellNOptR nloptr]; }; - CNORode = derive2 { name="CNORode"; version="1.23.0"; sha256="1r8sv5rdfpc1qjhdmz05p6gny03r1rxzayiwwbkh0xj6iwswbqdz"; depends=[CellNOptR genalg]; }; + CNEr = derive2 { name="CNEr"; version="1.17.4"; sha256="1pyv4j04ls6l5b1y80rrwjygyp2bii8psxvswyb70flpi18gs0jp"; depends=[annotate BiocGenerics Biostrings DBI GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 GO_db IRanges KEGGREST poweRlaw R_utils readr reshape2 RSQLite rtracklayer S4Vectors XVector]; }; + CNORdt = derive2 { name="CNORdt"; version="1.23.1"; sha256="044sgjrziy70b4xdlyl56y90p5cddcp5iwfbfcwbzfpz9hbqas4l"; depends=[abind CellNOptR]; }; + CNORfeeder = derive2 { name="CNORfeeder"; version="1.21.1"; sha256="1dvwj9q37hx6jrvzvlnkzqs3gl7abhm5b9v4xghp8ak00cwx19n6"; depends=[CellNOptR graph]; }; + CNORfuzzy = derive2 { name="CNORfuzzy"; version="1.23.1"; sha256="13dn4lnm5z0j817hxp513yas96918nvk363bwqy4gd6aps5nhi6k"; depends=[CellNOptR nloptr]; }; + CNORode = derive2 { name="CNORode"; version="1.23.1"; sha256="0f5lfyfvch8bp0prl5q3i8zmj0dbw50v6i48padgq3ajyszp86dx"; depends=[CellNOptR genalg]; }; + CNPBayes = derive2 { name="CNPBayes"; version="1.11.8"; sha256="007r98f177iw6qbsrz33pa6jsr236j45pdm6h4alg7c813blhiq3"; depends=[BiocGenerics coda combinat dplyr GenomeInfoDb GenomicRanges ggplot2 gtools IRanges magrittr matrixStats mclust purrr RColorBrewer Rcpp reshape2 S4Vectors scales SummarizedExperiment tibble tidyr]; }; CNTools = derive2 { name="CNTools"; version="1.37.0"; sha256="1hzdyjkbwv5iwapkf7a04r55gi1m0bg2ckjkmj4v94kfc5031nwc"; depends=[genefilter]; }; - CNVPanelizer = derive2 { name="CNVPanelizer"; version="1.13.0"; sha256="1pjmrdxg56gjwzbzvs38pdziymhsny9wnj4f5xqkmnkw6ps7v0m1"; depends=[exomeCopy foreach GenomeInfoDb GenomicRanges ggplot2 gplots IRanges NOISeq openxlsx plyr reshape2 Rsamtools S4Vectors shiny shinyFiles shinyjs stringr testthat]; }; + CNVPanelizer = derive2 { name="CNVPanelizer"; version="1.13.2"; sha256="0mzssf1w9yal8z9lg6b6wjhr3wgs7r03k2rsdi9baiwaiwvqjca5"; depends=[exomeCopy foreach GenomeInfoDb GenomicRanges ggplot2 gplots IRanges NOISeq openxlsx plyr reshape2 Rsamtools S4Vectors shiny shinyFiles shinyjs stringr testthat]; }; CNVrd2 = derive2 { name="CNVrd2"; version="1.19.0"; sha256="0xdkckwys2963ylj2mid10k9dwwwmsks29pdp5z4266z0z3r9x9b"; depends=[DNAcopy ggplot2 gridExtra IRanges rjags Rsamtools VariantAnnotation]; }; CNVtools = derive2 { name="CNVtools"; version="1.75.0"; sha256="1x70y389szy3b6vimlpzjsqdg4kykmx01wfw8aks5hxq9z23vaik"; depends=[survival]; }; - CODEX = derive2 { name="CODEX"; version="1.13.0"; sha256="1zfg0ka7cvrd1pp4qv8a25crkq78v0qm73z8x4246rlyzvnnxds5"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg19 GenomeInfoDb IRanges Rsamtools S4Vectors]; }; - COHCAP = derive2 { name="COHCAP"; version="1.27.1"; sha256="0a241dbwj6q0x7r3af252dvdv9i07vbslz0nc532gwv8r56426pw"; depends=[BH COHCAPanno gplots RColorBrewer Rcpp RcppArmadillo WriteXLS]; }; - COMPASS = derive2 { name="COMPASS"; version="1.19.0"; sha256="025gd220j77l4w55k9kmpr3438ffbjhq93ivc124jq3yr7qmpfgc"; depends=[abind BiocStyle clue data_table dplyr knitr magrittr pdist plyr RColorBrewer Rcpp reshape2 rlang rmarkdown scales tidyr]; }; - CONFESS = derive2 { name="CONFESS"; version="1.9.0"; sha256="03rdyklmk31pzg4q6gn8j501gx5hh7awbx4xbvgnw0hzk8753lbb"; depends=[changepoint cluster contrast data_table EBImage ecp flexmix flowClust flowCore flowMeans flowMerge flowPeaks foreach ggplot2 limma MASS moments outliers plotrix raster readbitmap reshape2 SamSPECTRAL waveslim wavethresh zoo]; }; + COCOA = derive2 { name="COCOA"; version="0.99.8"; sha256="07r7lv3kaf4lq4mgbgp5yym373mm949qs6wiwc5zvkkaka3rm6zx"; depends=[Biobase BiocGenerics ComplexHeatmap data_table GenomicRanges ggplot2 IRanges MIRA S4Vectors tidyr]; }; + CODEX = derive2 { name="CODEX"; version="1.13.1"; sha256="0mrr40660358n2f31phzmagwfg7fxdmmyhmcaqf17cdcyp9cnslb"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg19 GenomeInfoDb IRanges Rsamtools S4Vectors]; }; + COHCAP = derive2 { name="COHCAP"; version="1.27.5"; sha256="13b7ms1j1p6qfyvipzipm2qnr50rhzf0hm9h6h8g6rwvkxxqbvci"; depends=[BH COHCAPanno gplots RColorBrewer Rcpp RcppArmadillo WriteXLS]; }; + COMPASS = derive2 { name="COMPASS"; version="1.19.4"; sha256="061jy33qvsvadi3a8ccwqh02nmnhhs8khy7vixf9akndl2jqbzqz"; depends=[abind BiocStyle clue data_table dplyr knitr magrittr pdist plyr RColorBrewer Rcpp reshape2 rlang rmarkdown scales tidyr]; }; + CONFESS = derive2 { name="CONFESS"; version="1.9.1"; sha256="0v334w2252mvc4qmpz5wnwz7xk99nj2izj61qhaafiaqq9wk3f5i"; depends=[changepoint cluster contrast data_table EBImage ecp flexmix flowClust flowCore flowMeans flowMerge flowPeaks foreach ggplot2 limma MASS moments outliers plotrix raster readbitmap reshape2 SamSPECTRAL waveslim wavethresh zoo]; }; CORREP = derive2 { name="CORREP"; version="1.47.0"; sha256="061hyv2jxhjpwycv9c0s0881nsq1z3pm0jcn9simdha55hzb20hs"; depends=[e1071]; }; COSNet = derive2 { name="COSNet"; version="1.15.0"; sha256="0irkzh1rm430y5a67rx0rzc4bgb9zg9jyh768bgl1mcf3hjdqsgl"; depends=[]; }; - CRISPRseek = derive2 { name="CRISPRseek"; version="1.21.0"; sha256="1jnwr3jy0ak9nv4x6n9n5zfggmrr849y4rw8qq819ig6a3swafqz"; depends=[BiocGenerics BiocParallel Biostrings BSgenome data_table hash IRanges S4Vectors seqinr]; }; + CRISPRseek = derive2 { name="CRISPRseek"; version="1.21.4"; sha256="1ck8pqwm2g4fwibd5lbj9r04ryqhw93r7rn1djp7mfxp829asfl7"; depends=[BiocGenerics BiocParallel Biostrings BSgenome data_table hash IRanges S4Vectors seqinr]; }; CRImage = derive2 { name="CRImage"; version="1.29.0"; sha256="1b5giadnwi8h4x8bmkw5064grhaijmnkidbbd8fi2pc1pz406fli"; depends=[aCGH DNAcopy e1071 EBImage foreach MASS sgeostat]; }; CSAR = derive2 { name="CSAR"; version="1.33.0"; sha256="1i2amxpka75l91bhvfdwzs85hcl9c11rz82l2xsjybj0ff3v0m91"; depends=[GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; CSSP = derive2 { name="CSSP"; version="1.19.0"; sha256="1ic79b6cg68ylwj9r7ak21m1fbwrys3kwcllmhpdf8v0fldk6qld"; depends=[]; }; - CTDquerier = derive2 { name="CTDquerier"; version="1.1.0"; sha256="00y2cm7sbzkb7q8xn4jqh1478v6jhjrcmhgc2y3h13abb0v93xl0"; depends=[BiocFileCache ggplot2 gridExtra igraph rappdirs RCurl S4Vectors stringdist stringr]; }; - CVE = derive2 { name="CVE"; version="1.7.12"; sha256="0v39bkic6wxhh2asj0sf1cb0amvrli56ni5dxy6ilnka8437ywyw"; depends=[ape ConsensusClusterPlus ggplot2 gplots jsonlite plyr RColorBrewer shiny tidyverse WGCNA]; }; + CTDquerier = derive2 { name="CTDquerier"; version="1.1.2"; sha256="1sy46i32ylyny88992x6l9csn9aji7vjki6i47wdp6a0zi2s9q23"; depends=[BiocFileCache ggplot2 gridExtra igraph rappdirs RCurl S4Vectors stringdist stringr]; }; + CVE = derive2 { name="CVE"; version="1.7.13"; sha256="1sw0kiivd411hbr3jhvdpgl8b56f7w8vlxykyjgr47dbyn6nwbcd"; depends=[ape ConsensusClusterPlus ggplot2 gplots jsonlite plyr RColorBrewer shiny tidyverse WGCNA]; }; CancerInSilico = derive2 { name="CancerInSilico"; version="2.1.0"; sha256="1rpphiy5bda3gpfscgyzci5dynyqdia5nb720pdjzxbz9xkr87f5"; depends=[BH Rcpp]; }; CancerMutationAnalysis = derive2 { name="CancerMutationAnalysis"; version="1.23.0"; sha256="1dxw34fbr25q20k7z9isl4r0w5gz8jj1a0hd9kb4nqhm1yzilpai"; depends=[AnnotationDbi limma qvalue]; }; CancerSubtypes = derive2 { name="CancerSubtypes"; version="1.7.0"; sha256="09c7k5789i4afsgk1vxbz036s5gyxlnwmmwwpcgq0v4y920s37w3"; depends=[cluster ConsensusClusterPlus iCluster impute limma NMF sigclust SNFtool survival]; }; - Cardinal = derive2 { name="Cardinal"; version="1.13.0"; sha256="0iq9b3357c0drhy0yh1rk71z9bh7g6dxh4wwjvwig1bnd3wy506d"; depends=[Biobase BiocGenerics irlba lattice matter ProtGenerics signal sp]; }; - Category = derive2 { name="Category"; version="2.47.0"; sha256="0nrac7r5f13byc68h38ii1jld3m7w63qr340mnaylc2vc2ics6jz"; depends=[annotate AnnotationDbi Biobase BiocGenerics DBI genefilter graph GSEABase Matrix RBGL]; }; + Cardinal = derive2 { name="Cardinal"; version="1.99.1"; sha256="0pd5b3bvgcpylml6fkw5zr6kalzjqzkdyygrj2jcqyr73ln2hvxg"; depends=[Biobase BiocGenerics BiocParallel dplyr EBImage irlba lattice magrittr matter ProtGenerics S4Vectors signal sp]; }; + Category = derive2 { name="Category"; version="2.47.1"; sha256="1lg7adkrj3gsvbzkwdvrrpqv911p7ysqwimgj8silrk1vb21pghv"; depends=[annotate AnnotationDbi Biobase BiocGenerics DBI genefilter graph GSEABase Matrix RBGL]; }; CausalR = derive2 { name="CausalR"; version="1.13.0"; sha256="0npjg5zg4ckqhgjayb0rxvaaggbd52n61bs7mba6f20dnq1x0q5j"; depends=[igraph]; }; - CellMapper = derive2 { name="CellMapper"; version="1.7.0"; sha256="0jxanbmhi4004kilhdd19fp12yyjx8dcy91iify4ivrhp9c4xwr0"; depends=[S4Vectors]; }; - CellNOptR = derive2 { name="CellNOptR"; version="1.27.0"; sha256="0ig7g50lmy8z3b00adkanmr7nz56nf35ayfbxby2phpxirqf15wj"; depends=[ggplot2 graph hash RBGL RCurl Rgraphviz XML]; }; - CellScore = derive2 { name="CellScore"; version="1.1.0"; sha256="11hsyz15b8kfmb8vjgpwy5hgkmcizlv4ygnw0ffmkvpnjmlib4rm"; depends=[Biobase gplots lsa RColorBrewer squash]; }; - CellTrails = derive2 { name="CellTrails"; version="0.99.12"; sha256="10fn3vkkvjva6np8nkb39dxwkybac567rc0xxn09wlnxpqmfh8i7"; depends=[Biobase BiocGenerics cba dendextend dtw EnvStats ggplot2 ggrepel igraph maptree mgcv reshape2 Rtsne SingleCellExperiment SummarizedExperiment]; }; - CexoR = derive2 { name="CexoR"; version="1.19.1"; sha256="1yga6kc562ginzzb0cq8icyjkbj599j9q4hxzgd6hhf5590nfjfy"; depends=[genomation GenomeInfoDb GenomicRanges idr IRanges RColorBrewer Rsamtools rtracklayer S4Vectors]; }; - ChIC = derive2 { name="ChIC"; version="1.1.0"; sha256="1nh1dcqzf3m5gpkgblf7lx599c8dxm7gk53d7y12a7mdlrnzsh5j"; depends=[BiocGenerics caret caTools ChIC_data GenomicRanges IRanges S4Vectors spp]; }; + CellMapper = derive2 { name="CellMapper"; version="1.7.1"; sha256="18w6mxmx58rh93alrxfvqnkg3m28wrycvm5pcm5zr7kvckgd9zlr"; depends=[S4Vectors]; }; + CellNOptR = derive2 { name="CellNOptR"; version="1.27.1"; sha256="1rbn2dbch4mf7ckgbh16zv85imz3wrv97gc618m3q0swp03589ay"; depends=[ggplot2 graph hash RBGL RCurl Rgraphviz XML]; }; + CellScore = derive2 { name="CellScore"; version="1.1.1"; sha256="1fwnzggm0kldackdcr8ssb0g9448gkddv632aipp6ksqw609qn52"; depends=[Biobase gplots lsa RColorBrewer squash]; }; + CellTrails = derive2 { name="CellTrails"; version="0.99.15"; sha256="0pg0wqcfwwq7y8xqm0dcpkmn7j1vd3c0ivcyij11li2znmhamsm9"; depends=[Biobase BiocGenerics cba dendextend dtw EnvStats ggplot2 ggrepel igraph maptree mgcv reshape2 Rtsne SingleCellExperiment SummarizedExperiment]; }; + CexoR = derive2 { name="CexoR"; version="1.19.3"; sha256="1cia3bhplk559pz1znmqnfxy3zpzbg55489gadankpz3kz7n73xd"; depends=[genomation GenomeInfoDb GenomicRanges idr IRanges RColorBrewer Rsamtools rtracklayer S4Vectors]; }; + ChAMP = derive2 { name="ChAMP"; version="2.11.5"; sha256="1m6br9h75j9c659a4zhadghwf7aisc3sm2mz9s67fy3hlncmlska"; depends=[bumphunter ChAMPdata combinat dendextend DMRcate DNAcopy doParallel FEM GenomicRanges globaltest goseq Hmisc Illumina450ProbeVariants_db IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest illuminaio impute isva limma marray matrixStats minfi missMethyl plotly plyr preprocessCore prettydoc quadprog qvalue RColorBrewer rmarkdown RPMM shiny shinythemes sva wateRmelon]; }; + ChIC = derive2 { name="ChIC"; version="1.1.09"; sha256="1730yssk9ig84mbzbvs0rhszscp00sbqqhhvl559gfacajs5gv85"; depends=[BiocGenerics caret caTools ChIC_data GenomicRanges IRanges progress S4Vectors spp]; }; ChIPComp = derive2 { name="ChIPComp"; version="1.11.0"; sha256="0lia22xjj1w8m7hwpfcyaf6cldk05f78v93x3p947xdrkymx6lgc"; depends=[BiocGenerics BSgenome_Hsapiens_UCSC_hg19 BSgenome_Mmusculus_UCSC_mm9 GenomeInfoDb GenomicRanges IRanges limma Rsamtools rtracklayer S4Vectors]; }; - ChIPQC = derive2 { name="ChIPQC"; version="1.17.0"; sha256="0d68nizvlp9gx9s33s5ll4pmrp7rhpjd3xqc8pngc3zvwa4sjg96"; depends=[Biobase BiocGenerics BiocParallel chipseq DiffBind GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gtools IRanges Nozzle_R1 reshape2 Rsamtools S4Vectors TxDb_Celegans_UCSC_ce6_ensGene TxDb_Dmelanogaster_UCSC_dm3_ensGene TxDb_Hsapiens_UCSC_hg18_knownGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Mmusculus_UCSC_mm10_knownGene TxDb_Mmusculus_UCSC_mm9_knownGene TxDb_Rnorvegicus_UCSC_rn4_ensGene]; }; + ChIPQC = derive2 { name="ChIPQC"; version="1.17.1"; sha256="0cpii7sxp1vab5wnnm00kifqnmxxr8hc4rnb8l4wmk5ib4ijqpra"; depends=[Biobase BiocGenerics BiocParallel chipseq DiffBind GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gtools IRanges Nozzle_R1 reshape2 Rsamtools S4Vectors TxDb_Celegans_UCSC_ce6_ensGene TxDb_Dmelanogaster_UCSC_dm3_ensGene TxDb_Hsapiens_UCSC_hg18_knownGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Mmusculus_UCSC_mm10_knownGene TxDb_Mmusculus_UCSC_mm9_knownGene TxDb_Rnorvegicus_UCSC_rn4_ensGene]; }; ChIPSeqSpike = derive2 { name="ChIPSeqSpike"; version="1.1.0"; sha256="15w26zchxjggz8236afgykdncdzim9n3lyr4bm5p7qxzqs8aigbv"; depends=[BiocGenerics corrplot GenomicRanges ggplot2 IRanges LSD Rsamtools rtracklayer S4Vectors seqplots stringr]; }; - ChIPanalyser = derive2 { name="ChIPanalyser"; version="1.3.0"; sha256="08cwdrafzq4ilvck21dc49nf0mjb27vbxrb8i860pfdd77i08hz4"; depends=[Biostrings BSgenome GenomicRanges IRanges RcppRoll rtracklayer S4Vectors]; }; - ChIPexoQual = derive2 { name="ChIPexoQual"; version="1.5.0"; sha256="17w5qibbn4gpvmzndmh3igzbkvzljk88nkz7imld01n8wp4f0kni"; depends=[BiocParallel biovizBase broom data_table dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 hexbin IRanges RColorBrewer rmarkdown Rsamtools S4Vectors scales viridis]; }; - ChIPpeakAnno = derive2 { name="ChIPpeakAnno"; version="3.15.0"; sha256="0hck74qkrg4m9w30lag9jfv0ikh2q9d95fa73zjcbdil7n792l7k"; depends=[AnnotationDbi Biobase BiocGenerics BiocInstaller biomaRt Biostrings BSgenome DBI DelayedArray ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges GO_db graph idr IRanges limma matrixStats multtest RBGL regioneR Rsamtools S4Vectors seqinr SummarizedExperiment VennDiagram]; }; - ChIPseeker = derive2 { name="ChIPseeker"; version="1.17.0"; sha256="0002vn7kw83c8lzyrdkwi5c3vpkld3xihfa8zlx6hz41221im2vb"; depends=[AnnotationDbi BiocGenerics boot dplyr enrichplot GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gplots gridBase gtools IRanges magrittr plotrix RColorBrewer rtracklayer S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene UpSetR]; }; - ChIPseqR = derive2 { name="ChIPseqR"; version="1.35.0"; sha256="0q5s9pzdmiv2z6cjvy24nzpqsblr2p60qrd8kdgkh8hxx6wq79f1"; depends=[BiocGenerics Biostrings fBasics GenomicRanges HilbertVis IRanges S4Vectors ShortRead timsac]; }; - ChIPsim = derive2 { name="ChIPsim"; version="1.35.0"; sha256="1rz89zn383j8pa3g3rgabiw6zcg9h1nfbrmln4vwbbk6yk877l5l"; depends=[Biostrings IRanges ShortRead XVector]; }; - ChemmineOB = derive2 { name="ChemmineOB"; version="1.19.0"; sha256="0w9pr4k12a8c8h69ycn231igd74a8m72v1icii11jiijl3i9hfg3"; depends=[BH BiocGenerics Rcpp zlibbioc]; }; - ChemmineR = derive2 { name="ChemmineR"; version="3.33.1"; sha256="1dzm3cw6i3k38p9i0yzf0bcad8zqvkip434k11ppplk5ch923rzi"; depends=[base64enc BH BiocGenerics DBI digest DT ggplot2 gridExtra png Rcpp RCurl rjson rsvg]; }; + ChIPXpress = derive2 { name="ChIPXpress"; version="1.25.0"; sha256="0px8vpyiay60fb2qvjax7mkijkmix41vaa34g9s6ahzp7mxxhwyz"; depends=[affy biganalytics bigmemory Biobase ChIPXpressData frma GEOquery]; }; + ChIPanalyser = derive2 { name="ChIPanalyser"; version="1.3.7"; sha256="0lrpymicyi3fphw7vj1bcrgl00fpld7436kfffdwrmjla7m6539w"; depends=[BiocManager Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges RcppRoll ROCR rtracklayer S4Vectors]; }; + ChIPexoQual = derive2 { name="ChIPexoQual"; version="1.5.1"; sha256="1691808rn2jw08aivd2vsys279kbzs9ndf7brlgyaxaii3lxm2hc"; depends=[BiocParallel biovizBase broom data_table dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 hexbin IRanges RColorBrewer rmarkdown Rsamtools S4Vectors scales viridis]; }; + ChIPpeakAnno = derive2 { name="ChIPpeakAnno"; version="3.15.2"; sha256="1b5kg8vh37pslj5ckavz401pxpy1xgak9jsanfjb76wjbpyadzm0"; depends=[AnnotationDbi Biobase BiocGenerics BiocManager biomaRt Biostrings BSgenome DBI DelayedArray ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges GO_db graph idr IRanges limma matrixStats multtest RBGL regioneR Rsamtools S4Vectors seqinr SummarizedExperiment VennDiagram]; }; + ChIPseeker = derive2 { name="ChIPseeker"; version="1.17.2"; sha256="0gnb451jh6fscpgywbclk0plfmha4zxpzpf3lq6y9kyvxk9v2cqp"; depends=[AnnotationDbi BiocGenerics boot dplyr enrichplot GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gplots gridBase gtools IRanges magrittr plotrix RColorBrewer rtracklayer S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene UpSetR]; }; + ChIPseqR = derive2 { name="ChIPseqR"; version="1.35.2"; sha256="11pw2265qni3j20jn7kmxmw5gjf01x34vzsfnv6j4cn8k4hpl6l7"; depends=[BiocGenerics Biostrings fBasics GenomicRanges HilbertVis IRanges S4Vectors ShortRead timsac]; }; + ChIPsim = derive2 { name="ChIPsim"; version="1.35.2"; sha256="0nrwi9xy224g9r923gwkmmcq7ld4vnfwsgafiw7i1n20vsj85gyj"; depends=[Biostrings IRanges ShortRead XVector]; }; + ChemmineOB = derive2 { name="ChemmineOB"; version="1.19.3"; sha256="0c2xlkf1y15lqp7yibzp1wlknyf4l5wm8zwqf0s2grp3snc3zcv0"; depends=[BH BiocGenerics Rcpp zlibbioc]; }; + ChemmineR = derive2 { name="ChemmineR"; version="3.33.5"; sha256="0ydl1hz4hjiln4kpym7kdswbn7rddafpvsanblqbivy58p8vxkhk"; depends=[base64enc BH BiocGenerics DBI digest DT ggplot2 gridExtra png Rcpp RCurl rjson rsvg]; }; Chicago = derive2 { name="Chicago"; version="1.9.0"; sha256="0b3j250w0piasfs3jbyycy9w4snvrn7vbaq31hhj150gjvphsgzk"; depends=[data_table Delaporte Hmisc MASS matrixStats]; }; ChromHeatMap = derive2 { name="ChromHeatMap"; version="1.35.0"; sha256="18xgngy77rj8q91bj9v8kpzqijz15ax5w9db0xiyrspvi39z4fx4"; depends=[annotate AnnotationDbi Biobase BiocGenerics GenomicRanges IRanges rtracklayer]; }; - ClassifyR = derive2 { name="ClassifyR"; version="2.1.6"; sha256="0xnayr0w00nwmg9j6x6kl6i66l46ai734ifmgvdpgg18d6zi7zhr"; depends=[BiocParallel locfit MultiAssayExperiment plyr S4Vectors]; }; - Clomial = derive2 { name="Clomial"; version="1.17.2"; sha256="0kl6fbgrihbz2qk7gzpdjclh9x874kb0wsk3615b21ra9qdfl3va"; depends=[matrixStats permute]; }; + ClassifyR = derive2 { name="ClassifyR"; version="2.1.32"; sha256="1v82c9s3g7j6da528571nsw1d4yjl502zw5q7zfjdd23nz6kppzz"; depends=[BiocParallel locfit MultiAssayExperiment plyr S4Vectors]; }; + Clomial = derive2 { name="Clomial"; version="1.17.4"; sha256="0w0qnl7ihmkgl568wimx13cc4lhpxb1ll68iwkibnihz604rcnq6"; depends=[matrixStats permute]; }; Clonality = derive2 { name="Clonality"; version="1.29.0"; sha256="0hlrj9rl7d0wzyk6a95p68gx76m34bfgxvpz68r3qhdzi0z0lxbn"; depends=[DNAcopy]; }; ClusterJudge = derive2 { name="ClusterJudge"; version="1.3.0"; sha256="1zc019s15skjnzjm0vb5y3z4rd5cnk1awnvwxwj062y3pzr5kp62"; depends=[httr infotheo jsonlite lattice latticeExtra]; }; - ClusterSignificance = derive2 { name="ClusterSignificance"; version="1.9.0"; sha256="18j2jscwgmv2hcsi00182n03rvcqyaxbazzplxx5jqrgmqqzngmz"; depends=[pracma princurve RColorBrewer scatterplot3d]; }; + ClusterSignificance = derive2 { name="ClusterSignificance"; version="1.9.2"; sha256="13mgd8sxj65f7lv4jlbslq27zj3hsqd57fg34xkrvgvir2a7jcmp"; depends=[pracma princurve RColorBrewer scatterplot3d]; }; CoCiteStats = derive2 { name="CoCiteStats"; version="1.53.0"; sha256="0xy1zy4951r9xpjmhia8krrc429azbfg22nqzd9p0jcqflfj2sq7"; depends=[AnnotationDbi org_Hs_eg_db]; }; - CoGAPS = derive2 { name="CoGAPS"; version="3.1.0"; sha256="1ra3p9dqgpyfn3f4jq0jhamiiais0y2pli4qpyq3k3x510810mkd"; depends=[BH cluster doParallel foreach ggplot2 gplots RColorBrewer Rcpp reshape2 shiny]; }; - CoRegNet = derive2 { name="CoRegNet"; version="1.19.0"; sha256="1m532i7r1bz3dg5p2h8cfgligds95v6a57kv0xzan1gn37pys9g1"; depends=[arules igraph shiny]; }; + CoGAPS = derive2 { name="CoGAPS"; version="3.1.6"; sha256="15x5pp83i1wzzs5h9gdllzb4qffi6ciw1kf63h1x6b42sk37kzia"; depends=[BH cluster doParallel foreach ggplot2 gplots RColorBrewer Rcpp reshape2 shiny]; }; + CoRegNet = derive2 { name="CoRegNet"; version="1.19.1"; sha256="0ywa8d80vgk222161ks0mgxi0ahswm3mil0lxgxanny8ad1vxvx2"; depends=[arules igraph shiny]; }; CompGO = derive2 { name="CompGO"; version="1.17.0"; sha256="04f22n17b4cyv1mapimkmc913d22cpvifdznfgqgbmrkjsyygg2k"; depends=[GenomicFeatures ggplot2 pathview pcaMethods RDAVIDWebService reshape2 Rgraphviz rtracklayer TxDb_Mmusculus_UCSC_mm9_knownGene]; }; - ComplexHeatmap = derive2 { name="ComplexHeatmap"; version="1.19.1"; sha256="1wdbffj94jycbg95gpj8c5bdll2697v9rhqanv075373qa8f1miq"; depends=[circlize colorspace GetoptLong GlobalOptions RColorBrewer]; }; + ComplexHeatmap = derive2 { name="ComplexHeatmap"; version="1.19.3"; sha256="1pczcx26i30izg7iwi7ljnwqzf2k8mfw09dhmgbrcvy5siv7vn03"; depends=[circlize colorspace GetoptLong GlobalOptions RColorBrewer]; }; ConsensusClusterPlus = derive2 { name="ConsensusClusterPlus"; version="1.45.0"; sha256="1ypfclg252j9d7v78r81n14f0gsaxgzk6n1509rdv010h0xbaw2q"; depends=[ALL Biobase cluster]; }; - CopywriteR = derive2 { name="CopywriteR"; version="2.13.0"; sha256="11gls7dh4n4kd6dijvly5r3x918ivbpyriyz0y50333vpafm4swr"; depends=[BiocParallel chipseq CopyhelpeR data_table DNAcopy futile_logger GenomeInfoDb GenomicAlignments GenomicRanges gtools IRanges matrixStats Rsamtools S4Vectors]; }; + CopywriteR = derive2 { name="CopywriteR"; version="2.13.1"; sha256="1w3raf6756lnf1fmarcwsr10808ggih71v0gzky4xcbhgy5d9dkh"; depends=[BiocParallel chipseq CopyhelpeR data_table DNAcopy futile_logger GenomeInfoDb GenomicAlignments GenomicRanges gtools IRanges matrixStats Rsamtools S4Vectors]; }; CorMut = derive2 { name="CorMut"; version="1.23.0"; sha256="0y0sbnz3rlv98b87i7qcqv7zy1js180hmpy45fw55kmzjvd4j6vq"; depends=[igraph seqinr]; }; Cormotif = derive2 { name="Cormotif"; version="1.27.0"; sha256="0spl1qg0p8za8w6ikiwsf4d1spx55g1b73vcbpxbipmjymwc408i"; depends=[affy limma]; }; - CountClust = derive2 { name="CountClust"; version="1.9.0"; sha256="12f2bazvyz0xvd9a67qxwii30441nsnmxd89706h4k1ba1zgp436"; depends=[cowplot flexmix ggplot2 gtools limma maptpx picante plyr reshape2 slam SQUAREM]; }; + CountClust = derive2 { name="CountClust"; version="1.9.1"; sha256="06vqcmb53h7h329kvq51gka8gzbz811wnrbi92wr9p0vy2pwm3hy"; depends=[cowplot flexmix ggplot2 gtools limma maptpx picante plyr reshape2 slam SQUAREM]; }; CoverageView = derive2 { name="CoverageView"; version="1.19.0"; sha256="0alj0908pfih5z5zyi5szkimcm73sfsbqwpg6w594iglgyvbfbck"; depends=[GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors]; }; - CrispRVariants = derive2 { name="CrispRVariants"; version="1.9.0"; sha256="18ww7xjykyrn0fh07b341pzg7zypd4hmq2adpn6m331v7v91m3dw"; depends=[AnnotationDbi BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridExtra IRanges reshape2 Rsamtools S4Vectors]; }; - CytoDx = derive2 { name="CytoDx"; version="1.1.0"; sha256="02zh10icpc0iv0bcyayr6bcvbjsvgbq9whg7mnlqlnf8x4hx6mk2"; depends=[doParallel dplyr flowCore glmnet rpart rpart_plot]; }; - CytoML = derive2 { name="CytoML"; version="1.7.7"; sha256="0qr52pq6l04w2y0dqkh3vmyyxjd3jc0yh8yvx1hxy2yglvdb9mpw"; depends=[base64enc Biobase data_table flowCore flowUtils flowWorkspace ggcyto graph jsonlite ncdfFlow openCyto plyr RBGL Rgraphviz XML]; }; - DAPAR = derive2 { name="DAPAR"; version="1.13.0"; sha256="1qv5hgwcxpxjy5p0rbsr12wcplqvhyr2qwa1yr26ga7wqspbqg5g"; depends=[AnnotationDbi Cairo clusterProfiler cp4p DAPARdata doParallel dplyr foreach ggplot2 gplots graph highcharter imp4p impute imputeLCMD knitr lattice limma lme4 Matrix MSnbase norm openxlsx pcaMethods png preprocessCore RColorBrewer readxl reshape2 scales siggenes stringr tidyr tidyverse tmvtnorm vioplot]; }; + CrispRVariants = derive2 { name="CrispRVariants"; version="1.9.2"; sha256="09ilj21fr59kw51msyazl3lcypla5dd0sc3z60jrr4ygs3fyw91q"; depends=[AnnotationDbi BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridExtra IRanges reshape2 Rsamtools S4Vectors]; }; + CytoDx = derive2 { name="CytoDx"; version="1.1.2"; sha256="1d2kdsiarfz9hpr87qq94ybiyg8cg40j6p2pryw6qnkkj43qdmgj"; depends=[doParallel dplyr flowCore glmnet rpart rpart_plot]; }; + CytoML = derive2 { name="CytoML"; version="1.7.14"; sha256="0xflcjjzigq08xpjjsyz67v80x0qmxnrkjq9h4241f7s0vxx7pl2"; depends=[base64enc Biobase data_table flowCore flowUtils flowWorkspace ggcyto graph jsonlite ncdfFlow openCyto plyr RBGL Rgraphviz XML]; }; + DAPAR = derive2 { name="DAPAR"; version="1.13.15"; sha256="1yxkipp01zdx5xlj479a6f2hzrhs72fh8qyk5b5nbqvbrb2jipfh"; depends=[AnnotationDbi Cairo clusterProfiler cp4p DAPARdata doParallel dplyr factoextra FactoMineR foreach ggplot2 gplots graph highcharter imp4p impute knitr lattice limma lme4 Matrix MSnbase norm openxlsx pcaMethods png preprocessCore RColorBrewer readxl reshape2 scales siggenes stringr tidyr tidyverse tmvtnorm vioplot vsn]; }; DART = derive2 { name="DART"; version="1.29.0"; sha256="1akgln0w3xbvis0pcgjdm07jbbfsg0yn732gkvh1hzkpg26iwgfr"; depends=[igraph]; }; DBChIP = derive2 { name="DBChIP"; version="1.25.0"; sha256="1c3s5ffbdbhsr35q5mxs1vhl3glrjfwnpng11xlrcsj9h3jpxhva"; depends=[DESeq edgeR]; }; - DChIPRep = derive2 { name="DChIPRep"; version="1.11.0"; sha256="00r70fvr49fy4xmyyspgwiqphz96xcq9pz5c0srprrf4az71fl96"; depends=[assertthat ChIPpeakAnno DESeq2 fdrtool GenomicRanges ggplot2 plyr purrr reshape2 S4Vectors smoothmest soGGi SummarizedExperiment tidyr]; }; - DECIPHER = derive2 { name="DECIPHER"; version="2.9.1"; sha256="1b09amzwvchh56wy0bs2f6hgjrsa09hdpqql6ywkj7n7abg022vf"; depends=[Biostrings DBI IRanges RSQLite S4Vectors XVector]; }; - DEComplexDisease = derive2 { name="DEComplexDisease"; version="1.1.0"; sha256="0swqxmyqlh05albirm8n32wl31s4gbv45qn9c5mpdpvr6zsldylg"; depends=[BiocParallel ComplexHeatmap DESeq2 edgeR Rcpp SummarizedExperiment]; }; + DChIPRep = derive2 { name="DChIPRep"; version="1.11.1"; sha256="1kp0lsqlrnr815rp0g7jcppbrp1h62pa60j1jgav78bwh51l4dpq"; depends=[assertthat ChIPpeakAnno DESeq2 fdrtool GenomicRanges ggplot2 plyr purrr reshape2 S4Vectors smoothmest soGGi SummarizedExperiment tidyr]; }; + DECIPHER = derive2 { name="DECIPHER"; version="2.9.2"; sha256="0lvg0kcv6rryb39aini5s9b4aacbld67z7427w9gvpsj7zcapgvz"; depends=[Biostrings DBI IRanges RSQLite S4Vectors XVector]; }; + DEComplexDisease = derive2 { name="DEComplexDisease"; version="1.1.1"; sha256="007wgj3kpdk7nvx8qribm6vqfca4vp7n1ih8y866xlqgdcr5ad61"; depends=[BiocParallel ComplexHeatmap DESeq2 edgeR Rcpp SummarizedExperiment]; }; DEDS = derive2 { name="DEDS"; version="1.55.0"; sha256="0823ycm0j30dh1pbpxbcfwqglpff72675cr4h18rk0fx0v742vhy"; depends=[]; }; - DEFormats = derive2 { name="DEFormats"; version="1.9.0"; sha256="1vd3dnc38mmgkw07qbazra8928c6r8wcxcizq05bwgjqhwfjdyxs"; depends=[checkmate data_table DESeq2 edgeR GenomicRanges S4Vectors SummarizedExperiment]; }; - DEGraph = derive2 { name="DEGraph"; version="1.33.0"; sha256="1xmawr15c8nxw8hgh3ijq2cp6ynkb8xana6zfidcibwmgfs7zlw6"; depends=[graph KEGGgraph lattice mvtnorm NCIgraph R_methodsS3 R_utils RBGL Rgraphviz rrcov]; }; - DEGreport = derive2 { name="DEGreport"; version="1.17.2"; sha256="1zf1fryw0h1kh8hwi0v6xkvr22gi7qbynn1j2fmx9n5n2246n3ad"; depends=[Biobase BiocGenerics circlize cluster ComplexHeatmap ConsensusClusterPlus cowplot DESeq2 dplyr edgeR ggdendro ggplot2 ggrepel knitr logging magrittr Nozzle_R1 psych RColorBrewer reshape rlang S4Vectors scales stringr SummarizedExperiment tibble tidyr]; }; - DEGseq = derive2 { name="DEGseq"; version="1.35.0"; sha256="0kynaqbzlsldxjkqxd396xs5gfzmkvrkxhn14ihv651iviarwb8b"; depends=[qvalue samr]; }; - DEP = derive2 { name="DEP"; version="1.3.2"; sha256="0yy70j6ng0cdg16s3nmly2447857h0ks71q16c7vp2xgxjlqbipd"; depends=[assertthat circlize cluster ComplexHeatmap dplyr DT fdrtool ggplot2 ggrepel gridExtra imputeLCMD limma MSnbase purrr RColorBrewer readr rmarkdown shiny shinydashboard SummarizedExperiment tibble tidyr vsn]; }; + DEFormats = derive2 { name="DEFormats"; version="1.9.1"; sha256="1hcxamc82wyp8xgrx4mxhw3q15g32y8z66qgv1gbm7h17wykssih"; depends=[checkmate data_table DESeq2 edgeR GenomicRanges S4Vectors SummarizedExperiment]; }; + DEGraph = derive2 { name="DEGraph"; version="1.33.1"; sha256="19fcsjz6bgc1bvnympvq0ms5d7mvj2681jbnq5inrr4pxq2qz0p0"; depends=[graph KEGGgraph lattice mvtnorm NCIgraph R_methodsS3 R_utils RBGL Rgraphviz rrcov]; }; + DEGreport = derive2 { name="DEGreport"; version="1.17.8"; sha256="02z93g0fy594dhj7dk16fglw4jakyb44zcn22k1c64d8wvhq8rfa"; depends=[Biobase BiocGenerics broom circlize cluster ComplexHeatmap ConsensusClusterPlus cowplot DESeq2 dplyr edgeR ggdendro ggplot2 ggrepel knitr lasso2 logging magrittr Nozzle_R1 psych RColorBrewer reshape rlang S4Vectors scales stringr SummarizedExperiment tibble tidyr]; }; + DEGseq = derive2 { name="DEGseq"; version="1.35.1"; sha256="1mb9chwazmsj9j4dz92kw2mhc3b5lx5v2y3xgdcc9s4bjmb21xrz"; depends=[qvalue]; }; + DEP = derive2 { name="DEP"; version="1.3.3"; sha256="0wmzinv369svfwfmgv2gsz471bnh5vz77p5w1q4ycgd6lj5l2ckn"; depends=[assertthat circlize cluster ComplexHeatmap dplyr DT fdrtool ggplot2 ggrepel gridExtra imputeLCMD limma MSnbase purrr RColorBrewer readr rmarkdown shiny shinydashboard SummarizedExperiment tibble tidyr vsn]; }; DEScan2 = derive2 { name="DEScan2"; version="1.1.2"; sha256="04xla8cr3f3r1dwvahs55l93bzlnds04c42kx93lgyn5r2ksqr8n"; depends=[BiocGenerics BiocParallel ChIPpeakAnno data_table DelayedArray GenomeInfoDb GenomicAlignments GenomicRanges glue IRanges plyr Rcpp RcppArmadillo rtracklayer S4Vectors SummarizedExperiment]; }; DESeq = derive2 { name="DESeq"; version="1.33.0"; sha256="1h56v3d1kj8inh3xy08k6kfc31czyq9a2zwy1v2kibcaa79z4zrn"; depends=[Biobase BiocGenerics genefilter geneplotter lattice locfit MASS RColorBrewer]; }; - DESeq2 = derive2 { name="DESeq2"; version="1.21.6"; sha256="02libh2lsna118na2lbc8hmd11dm9lia6gcnb59jqp69w9mmmpyk"; depends=[Biobase BiocGenerics BiocParallel genefilter geneplotter GenomicRanges ggplot2 Hmisc IRanges locfit Rcpp RcppArmadillo S4Vectors SummarizedExperiment]; }; - DEXSeq = derive2 { name="DEXSeq"; version="1.27.0"; sha256="113dircdkngrrsb50mk3pp4x4nis2b27j020blxra3i9n3g2zrq7"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel biomaRt DESeq2 genefilter geneplotter GenomicRanges hwriter IRanges RColorBrewer Rsamtools S4Vectors statmod stringr SummarizedExperiment]; }; - DEsingle = derive2 { name="DEsingle"; version="1.1.4"; sha256="0nzm9nw9rqmk13vz7vyqjiy096m1vka51pqrs830yyf4vq69g457"; depends=[bbmle BiocParallel gamlss MASS Matrix maxLik pscl VGAM]; }; - DEsubs = derive2 { name="DEsubs"; version="1.7.1"; sha256="0wj89308s4rq2d1i1f6y79wj2fpk0gk2gzpfam0x5pfppzz83cx8"; depends=[circlize DESeq DESeq2 EBSeq edgeR ggplot2 graph igraph jsonlite limma locfit Matrix NBPSeq pheatmap RBGL samr]; }; + DESeq2 = derive2 { name="DESeq2"; version="1.21.25"; sha256="1ll8fdpqyml171vsxsnggsx09963jz15rivvn32xihwas9dxwksv"; depends=[Biobase BiocGenerics BiocParallel genefilter geneplotter GenomicRanges ggplot2 Hmisc IRanges locfit Rcpp RcppArmadillo S4Vectors SummarizedExperiment]; }; + DEXSeq = derive2 { name="DEXSeq"; version="1.27.1"; sha256="0jppj3yl1jibxj2ci07sf4lbbx9rbjlx172ynp2vg3ic7j7y6z61"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel biomaRt DESeq2 genefilter geneplotter GenomicRanges hwriter IRanges RColorBrewer Rsamtools S4Vectors statmod stringr SummarizedExperiment]; }; + DEqMS = derive2 { name="DEqMS"; version="0.99.44"; sha256="01754m7rwrc1in1ls8vd0c94p2p4jyspb0nwx42scb8kjpnmcbdq"; depends=[ggplot2 limma]; }; + DEsingle = derive2 { name="DEsingle"; version="1.1.5"; sha256="0biail9qfp0sp7f2sp4mx55ajba2waqsfllx2sndjls0673pv215"; depends=[bbmle BiocParallel gamlss MASS Matrix maxLik pscl VGAM]; }; + DEsubs = derive2 { name="DEsubs"; version="1.7.4"; sha256="0v4yd63zzd0k7y19pcx5mb7iq17dijjldf64c6nwlf69d8gv5lp9"; depends=[circlize DESeq DESeq2 EBSeq edgeR ggplot2 graph igraph jsonlite limma locfit Matrix NBPSeq pheatmap RBGL]; }; DFP = derive2 { name="DFP"; version="1.39.0"; sha256="10yamzm28gnayrjc58jvj6mjg2j6gr266f65i9rrz5shnz9244wl"; depends=[Biobase]; }; - DMCHMM = derive2 { name="DMCHMM"; version="1.3.0"; sha256="0076i6d9qpphbxrkz0maqi6qsviix0sxckz6hg5mwrymsawssh48"; depends=[BiocParallel calibrate fdrtool GenomicRanges IRanges multcomp rtracklayer S4Vectors SummarizedExperiment]; }; - DMRScan = derive2 { name="DMRScan"; version="1.7.4"; sha256="1gdnn3kzlfhj3vp4j1r7q8ggfqq5jmcx1jyrpd8wc9pn0nhnamiv"; depends=[GenomeInfoDb GenomicRanges IRanges MASS Matrix mvtnorm RcppRoll]; }; - DMRcaller = derive2 { name="DMRcaller"; version="1.13.1"; sha256="01ip1xgyr1jjmrg85agbxxg4b6ihy9jkxfrf1hjkpmi1qkzw8pxz"; depends=[betareg GenomicRanges IRanges Rcpp RcppRoll S4Vectors]; }; - DMRcate = derive2 { name="DMRcate"; version="1.17.0"; sha256="19k6cl4a154hgasqk3nycb0wxra0yg1nvn3ywbsikn17pa6qiyzc"; depends=[DMRcatedata DSS GenomicRanges Gviz IRanges limma minfi missMethyl plyr S4Vectors]; }; + DMCHMM = derive2 { name="DMCHMM"; version="1.3.1"; sha256="01r9kzyjsk43ncw7xbr95r4apxchpkfjl4qilxvgsq8icg0mhqx4"; depends=[BiocParallel calibrate fdrtool GenomicRanges IRanges multcomp rtracklayer S4Vectors SummarizedExperiment]; }; + DMRScan = derive2 { name="DMRScan"; version="1.7.5"; sha256="1x6nv3688p4lh8bsv3brg35xpn4pk6i1fks2zfdfspvagbq4bqvp"; depends=[GenomeInfoDb GenomicRanges IRanges MASS Matrix mvtnorm RcppRoll]; }; + DMRcaller = derive2 { name="DMRcaller"; version="1.13.8"; sha256="0lp27mbx6sqh4b7fwsbm0gxk5ng9qabdimxhw4f8dqhsza6mp73p"; depends=[betareg GenomicRanges IRanges Rcpp RcppRoll S4Vectors]; }; + DMRcate = derive2 { name="DMRcate"; version="1.17.6"; sha256="0ynh5q7shl6as7vafg0z7z4ld2ikk785vhw656viipix4q71k1iv"; depends=[DMRcatedata DSS GenomicRanges Gviz IRanges limma minfi missMethyl plyr S4Vectors]; }; DMRforPairs = derive2 { name="DMRforPairs"; version="1.17.0"; sha256="0094pw863dnc57kfif490fabcsggplfdr5xh41asldydp2x1pwcy"; depends=[GenomicRanges Gviz R2HTML]; }; DNABarcodes = derive2 { name="DNABarcodes"; version="1.11.0"; sha256="1hpsdybpj3dszjxvlh7x2j5xdrgyhx03sv15hlg2bn4jj6am4iiy"; depends=[BH Matrix Rcpp]; }; DNAcopy = derive2 { name="DNAcopy"; version="1.55.0"; sha256="1bmd22nmfbrcwvz9qk6rh4f81faxh7f71fk2pgvgdcz97kzl4g8w"; depends=[]; }; - DNAshapeR = derive2 { name="DNAshapeR"; version="1.9.5"; sha256="1am9mcfr1fab29p06ppyl74qsdpvbq716vbys0dx8r9j1bf7x36x"; depends=[Biostrings fields GenomicRanges Rcpp]; }; + DNAshapeR = derive2 { name="DNAshapeR"; version="1.9.6"; sha256="1v29k18l3wqrnhfzgj3lff5pzzgwn5n9956xlx94nbblh01x96lc"; depends=[Biostrings fields GenomicRanges Rcpp]; }; + DOQTL = derive2 { name="DOQTL"; version="1.17.5"; sha256="1z1qbzg0fw6ygskk1p339dlkmbm6nj8wmwng9izhmipfn6jpfzfv"; depends=[annotate annotationTools Biobase BiocGenerics biomaRt BSgenome_Mmusculus_UCSC_mm10 corpcor doParallel foreach fpc GenomicRanges hwriter IRanges iterators mclust QTLRel regress rhdf5 Rsamtools RUnit VariantAnnotation XML]; }; DOSE = derive2 { name="DOSE"; version="3.7.1"; sha256="0dldsqs807hgnfx59vl1q90hh1lv9x2dbxndbfi97yvzlkhnar55"; depends=[AnnotationDbi BiocParallel DO_db fgsea ggplot2 GOSemSim qvalue reshape2 S4Vectors]; }; - DRIMSeq = derive2 { name="DRIMSeq"; version="1.9.0"; sha256="1q3zff7wrk9hflz1jzrs1g0pacsv62rgif0bhglsk1877iqj8nip"; depends=[BiocGenerics BiocParallel edgeR GenomicRanges ggplot2 IRanges limma MASS reshape2 S4Vectors]; }; + DRIMSeq = derive2 { name="DRIMSeq"; version="1.9.2"; sha256="0kpfvphzighq7iryxbn7s6v7k3mi09cv49r2c9gsyklqypv5cvsq"; depends=[BiocGenerics BiocParallel edgeR GenomicRanges ggplot2 IRanges limma MASS reshape2 S4Vectors]; }; DSS = derive2 { name="DSS"; version="2.29.0"; sha256="1jwjyfx1356j0jxryf8f3mnl764fd5bz5p395z6ax8xsafzkabq1"; depends=[Biobase bsseq DelayedArray]; }; DTA = derive2 { name="DTA"; version="2.27.0"; sha256="129hvbvdgq7whh1f63gdh28w0g5avl3xqwvjm61makyyqyx47ipf"; depends=[LSD scatterplot3d]; }; - DaMiRseq = derive2 { name="DaMiRseq"; version="1.5.1"; sha256="0zli040zjbgphlg2f0bxcb69nlhzzfzjr91cs8999p8hb80dml7l"; depends=[arm caret corrplot DESeq2 e1071 EDASeq FactoMineR FSelector ggplot2 Hmisc ineq kknn limma lubridate MASS pheatmap pls plsVarSel randomForest RColorBrewer reshape2 RSNNS SummarizedExperiment sva]; }; - DeMAND = derive2 { name="DeMAND"; version="1.11.0"; sha256="1fmswncd9jp49ni7rpg7xkcrnz2nh58xj9nyig1098hib00y70ml"; depends=[KernSmooth]; }; + DaMiRseq = derive2 { name="DaMiRseq"; version="1.5.3"; sha256="0zxw6ls834cizk6nw8kpbi7p9c2xr2s0892qmizzqbgag8d0mjif"; depends=[arm caret corrplot DESeq2 e1071 EDASeq edgeR FactoMineR FSelector ggplot2 Hmisc ineq kknn limma lubridate MASS pheatmap pls plsVarSel randomForest RColorBrewer reshape2 RSNNS SummarizedExperiment sva]; }; + DeMAND = derive2 { name="DeMAND"; version="1.11.1"; sha256="00rbd5mwrh9g2ppx0z0kaf1245l7r5rgiyzhrhkrkp6vvbjrhd4i"; depends=[KernSmooth]; }; DeconRNASeq = derive2 { name="DeconRNASeq"; version="1.23.0"; sha256="0hnnw6k246a0dsj0ppfrj40ddrl3czpdq28gvkahyig64ljwfrbm"; depends=[ggplot2 limSolve pcaMethods]; }; DeepBlueR = derive2 { name="DeepBlueR"; version="1.7.0"; sha256="198apfr10nfnk82zhmsnk9vpq2ykfi6yh79gwdnnkls8h2r5nqz9"; depends=[data_table diffr dplyr filehash foreach GenomeInfoDb GenomicRanges R_utils RCurl rjson rtracklayer settings stringr withr XML]; }; - DelayedArray = derive2 { name="DelayedArray"; version="0.7.18"; sha256="1a2a558xc638prbb96xfkd97m40cf3hdv3g40r8a1xfw0vk9669k"; depends=[BiocGenerics BiocParallel IRanges matrixStats S4Vectors]; }; - DelayedMatrixStats = derive2 { name="DelayedMatrixStats"; version="1.3.4"; sha256="12ljlbk01p9cv8vwjapq1nknvsqf3qp44qh4yyq1j5cr8l8rg2xx"; depends=[DelayedArray IRanges Matrix matrixStats S4Vectors]; }; + DelayedArray = derive2 { name="DelayedArray"; version="0.7.49"; sha256="0nkpnxa91prhfnd0dwfmfr0g3r8i93gy6xcw403s81zw74imn1jk"; depends=[BiocGenerics BiocParallel IRanges matrixStats S4Vectors]; }; + DelayedMatrixStats = derive2 { name="DelayedMatrixStats"; version="1.3.11"; sha256="0m3dx01ibmxqn4syv5cw88m7b30qlby6fiwjhd3927zmfi3jwl2s"; depends=[BiocParallel DelayedArray HDF5Array IRanges Matrix matrixStats S4Vectors]; }; DiffBind = derive2 { name="DiffBind"; version="2.9.0"; sha256="0ka72zizphm2sphr8gm53602wgm7rkfc6hx0fql3cb34yjg11wi1"; depends=[amap BiocParallel DESeq2 dplyr edgeR GenomicAlignments GenomicRanges ggplot2 ggrepel gplots IRanges lattice limma locfit RColorBrewer Rcpp Rsamtools S4Vectors SummarizedExperiment systemPipeR zlibbioc]; }; DiffLogo = derive2 { name="DiffLogo"; version="2.5.0"; sha256="00vk5qj0byh8ggg5nmaa94ddbi42rl59y049bxx37qr98qyw79yj"; depends=[cba]; }; - Director = derive2 { name="Director"; version="1.7.0"; sha256="0xd8fviwd59smfzvrvwszpv69a74606w8iwds9gq8yi8s38288bs"; depends=[htmltools]; }; + Director = derive2 { name="Director"; version="1.7.3"; sha256="1yin749xl3v3h01gccvlgkb91l2dn1rkm7asb3q9bxnr389sm4yr"; depends=[htmltools]; }; DirichletMultinomial = derive2 { name="DirichletMultinomial"; version="1.23.0"; sha256="1wxb094p90628bbkm4vzjrpxcagcpm17iqa0f1hjfy7b8a1my9wh"; depends=[BiocGenerics IRanges S4Vectors]; }; - DominoEffect = derive2 { name="DominoEffect"; version="1.1.0"; sha256="1n2hr24izsd3zvxc795zw7678kwz4glaz09r49s0wr1lp70rgzb0"; depends=[AnnotationDbi biomaRt Biostrings data_table GenomeInfoDb GenomicRanges IRanges SummarizedExperiment VariantAnnotation]; }; + DominoEffect = derive2 { name="DominoEffect"; version="1.1.2"; sha256="1ri0224my8imjjd95ccdg3gmpq4npji67f01skvycn7j2z5illq8"; depends=[AnnotationDbi biomaRt Biostrings data_table GenomeInfoDb GenomicRanges IRanges SummarizedExperiment VariantAnnotation]; }; Doscheda = derive2 { name="Doscheda"; version="1.3.0"; sha256="1yfywqzxjj88wwnwmrm3yd9z1al74w2xzijzk1zqdjy5lg8vc1qn"; depends=[affy calibrate corrgram d3heatmap drc DT ggplot2 gridExtra httr jsonlite limma matrixStats prodlim readxl reshape2 shiny shinydashboard stringr vsn]; }; DriverNet = derive2 { name="DriverNet"; version="1.21.0"; sha256="0ja7jpnh2rh4gkcv0h99mma19rk07y1vmh4hpkyxg1m1mb1q4vyv"; depends=[]; }; - DropletUtils = derive2 { name="DropletUtils"; version="1.1.5"; sha256="1yq3ijm3g71gh9gp72lwr7dzq395j548xvp11vrn0bp867rx4b5s"; depends=[beachmat BiocParallel edgeR Matrix Rcpp rhdf5 Rhdf5lib S4Vectors SingleCellExperiment]; }; + DropletUtils = derive2 { name="DropletUtils"; version="1.1.13"; sha256="1qpds9drjvxwjdlv844lsv081iyp4syzvhpkm90skd5wpsfiriy7"; depends=[beachmat BiocParallel edgeR HDF5Array Matrix Rcpp rhdf5 Rhdf5lib S4Vectors SingleCellExperiment]; }; DrugVsDisease = derive2 { name="DrugVsDisease"; version="2.23.0"; sha256="01hrd65q8h9r09y91vnl7x8gczgi3q8vlxihyingxjdc09qn86xd"; depends=[affy annotate ArrayExpress BiocGenerics biomaRt cMap2data DrugVsDiseasedata GEOquery hgu133a_db hgu133a2_db hgu133plus2_db limma qvalue RUnit xtable]; }; - DupChecker = derive2 { name="DupChecker"; version="1.19.0"; sha256="03bfyg1h08ya41svmvnyd0mxs4qakrk7xwpyv2m51cn3rk2cgacl"; depends=[R_utils RCurl]; }; + DupChecker = derive2 { name="DupChecker"; version="1.19.1"; sha256="0a8vaamkpqwir3w3clfihpwcbjfmaaccwb86b6i6lydglkbdhnpq"; depends=[R_utils RCurl]; }; DynDoc = derive2 { name="DynDoc"; version="1.59.0"; sha256="1cdyv6ylgdz7fyj8dnndy5y0khg0na8r7sss5p1pja73idxdqpvf"; depends=[]; }; - EBImage = derive2 { name="EBImage"; version="4.23.0"; sha256="1v9lnyc5x3xwrabqgr4l9mx67bgwbq4gyyimq87pm1id5p3vpb9d"; depends=[abind BiocGenerics fftwtools htmltools htmlwidgets jpeg locfit png RCurl tiff]; }; + EBImage = derive2 { name="EBImage"; version="4.23.2"; sha256="0q91m78i1s5ds5971rbdgrlv6d4mj30ljssbg75gw1gxzhlhaczg"; depends=[abind BiocGenerics fftwtools htmltools htmlwidgets jpeg locfit png RCurl tiff]; }; EBSEA = derive2 { name="EBSEA"; version="1.9.0"; sha256="14bgrkfx93gcr0j9fj48krnfvhnbjxnqanvnx85n5x48bk40s2jr"; depends=[edgeR limma plyr]; }; EBSeq = derive2 { name="EBSeq"; version="1.21.0"; sha256="0nbw3mkqgify3yijwizdznafvfyd4qizfqaj5f3w04nx0h8m8b2h"; depends=[blockmodeling gplots testthat]; }; EBSeqHMM = derive2 { name="EBSeqHMM"; version="1.15.0"; sha256="067fi2vy35y3n6a5264a7af3j03jg46fp7vzl80ca7x8vqji4xvy"; depends=[EBSeq]; }; EBarrays = derive2 { name="EBarrays"; version="2.45.0"; sha256="1wvim2qldy74qccgqkj6hwqxjhwm3sgj2gsr88qqh16gvfqy1w9z"; depends=[Biobase cluster lattice]; }; EBcoexpress = derive2 { name="EBcoexpress"; version="1.25.0"; sha256="1xpihh3pxm492kqrf7pnz6sarz98hqhrgw3ybicja3cvn5ihlk1j"; depends=[EBarrays mclust minqa]; }; - EDASeq = derive2 { name="EDASeq"; version="2.15.2"; sha256="1d7dq3fl9qmv5bll4vkbj4zvd9md44grpr4vdxk29wcjm6dzjyma"; depends=[AnnotationDbi Biobase BiocGenerics biomaRt Biostrings DESeq GenomicFeatures GenomicRanges IRanges Rsamtools ShortRead]; }; - EDDA = derive2 { name="EDDA"; version="1.19.0"; sha256="1q15lj4sa76yhjgyzng1sr60aa1dbfyw51dphvg7n1c1jngqib0n"; depends=[baySeq DESeq edgeR Rcpp ROCR snow]; }; - EGAD = derive2 { name="EGAD"; version="1.9.0"; sha256="1k1bv3z5dvgiid0vdfc3kkx9b37qbafybqxvdc188685nfkkkr03"; depends=[affy arrayQualityMetrics Biobase GEOquery gplots igraph impute limma MASS Matrix plyr RColorBrewer RCurl zoo]; }; - EGSEA = derive2 { name="EGSEA"; version="1.9.0"; sha256="1qasrnfmrnvk05v4w4yyj0wyp02jcg0ww8svjnmhhlqpyj256s99"; depends=[AnnotationDbi Biobase DT edgeR EGSEAdata gage ggplot2 Glimma globaltest gplots GSVA HTMLUtils htmlwidgets hwriter limma metap org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db PADOG pathview plotly RColorBrewer safe stringi topGO]; }; - ELBOW = derive2 { name="ELBOW"; version="1.17.0"; sha256="0g4ss21apdp6zsg70fl79f2xz4gwdl0ygyp03a636xpg2y6hbrx3"; depends=[]; }; - ELMER = derive2 { name="ELMER"; version="2.5.4"; sha256="0qzivgb21y1g7y7j7dm0y2w7w2wdvxsfxblp8q21rh5z1wxr696x"; depends=[biomaRt circlize ComplexHeatmap doParallel downloader dplyr ELMER_data GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggrepel gridExtra Gviz IRanges lattice magrittr Matrix MultiAssayExperiment plotly plyr readr reshape rmarkdown rvest S4Vectors stringr SummarizedExperiment TCGAbiolinks xml2]; }; + EDASeq = derive2 { name="EDASeq"; version="2.15.4"; sha256="0lsp0cgix7qkqry6hk2a6wqp8cfqcr3apdsi31jgjnxqz7fn7jlj"; depends=[AnnotationDbi aroma_light Biobase BiocGenerics biomaRt Biostrings DESeq GenomicFeatures GenomicRanges IRanges Rsamtools ShortRead]; }; + EDDA = derive2 { name="EDDA"; version="1.19.1"; sha256="0cs962g60shzywbp4q33hxv03qwrkr6cn12c63i8wfp49kz1g7h1"; depends=[baySeq DESeq edgeR Rcpp ROCR snow]; }; + EGAD = derive2 { name="EGAD"; version="1.9.2"; sha256="0xb1lcrzivadfnwl2v0x0aldsqzilcg7ygy6mizbijpfr79g8y42"; depends=[affy arrayQualityMetrics Biobase GEOquery gplots igraph impute limma MASS Matrix plyr RColorBrewer RCurl zoo]; }; + EGSEA = derive2 { name="EGSEA"; version="1.9.2"; sha256="1mphjnwvwnphq2iby76w49rlwflxvhm72488gv0ls5pyvvj68r32"; depends=[AnnotationDbi Biobase DT edgeR EGSEAdata gage ggplot2 Glimma globaltest gplots GSVA HTMLUtils htmlwidgets hwriter limma metap org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db PADOG pathview plotly RColorBrewer safe stringi topGO]; }; + ELBOW = derive2 { name="ELBOW"; version="1.17.1"; sha256="1wz4msw03g9c6732zciqpcabq8q3arxng5cbzpfgym22n0gsri82"; depends=[]; }; + ELMER = derive2 { name="ELMER"; version="2.5.7"; sha256="0a987d542rgydny6fwpvgrhjr0729b8mpr2nyv3j7ic65c1hzibf"; depends=[biomaRt circlize ComplexHeatmap doParallel downloader dplyr ELMER_data GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggrepel gridExtra Gviz IRanges lattice magrittr Matrix MultiAssayExperiment plotly plyr readr reshape rmarkdown rvest S4Vectors stringr SummarizedExperiment TCGAbiolinks xml2]; }; EMDomics = derive2 { name="EMDomics"; version="2.11.0"; sha256="0snk2fcikj34s2hhfg9i5di92nd8lbg26ypvc1b1zcf7rj5yy07p"; depends=[BiocParallel CDFt emdist ggplot2 matrixStats preprocessCore]; }; ENCODExplorer = derive2 { name="ENCODExplorer"; version="2.7.0"; sha256="01sjpf4s0gdsiv6pqjmh0jq582wax9za47qf619igyzhwy2crvp1"; depends=[data_table dplyr DT jsonlite RCurl shiny shinythemes stringi stringr tidyr]; }; ENVISIONQuery = derive2 { name="ENVISIONQuery"; version="1.29.0"; sha256="1pj6r1sb3izyr2ilv95j3nl92297zxiypjipl1x3nrqpnjn7k032"; depends=[rJava XML]; }; ENmix = derive2 { name="ENmix"; version="1.17.0"; sha256="0hk2qj8y976ybz2pxj5ldnr13z3l64s8z7na18ry85yvbv90xzs3"; depends=[doParallel foreach geneplotter impute MASS minfi preprocessCore SummarizedExperiment sva wateRmelon]; }; + ERSSA = derive2 { name="ERSSA"; version="0.99.8"; sha256="0l56mvag5y1svm18l093037ilarna51zz56bxnbidzgvqgw1cdfc"; depends=[BiocParallel DESeq2 edgeR ggplot2 plyr RColorBrewer]; }; EasyqpcR = derive2 { name="EasyqpcR"; version="1.23.2"; sha256="1fdfhclpyv6ls6misnwa4kvm9qlgnv65pqg58q2rqd2w012kic02"; depends=[gWidgetsRGtk2 matrixStats plotrix plyr]; }; EmpiricalBrownsMethod = derive2 { name="EmpiricalBrownsMethod"; version="1.9.0"; sha256="131xg14zp0kqxwk1y2yfxb0sysf4ad97klrgsrnqkdbvjfz8wfa0"; depends=[]; }; - EnrichedHeatmap = derive2 { name="EnrichedHeatmap"; version="1.11.2"; sha256="1rfls2xz7v7bj27f07rzvlq4d12ajzbcpza11wq6jy73snvb29p4"; depends=[circlize ComplexHeatmap GenomicRanges GetoptLong IRanges locfit matrixStats Rcpp]; }; - EnrichmentBrowser = derive2 { name="EnrichmentBrowser"; version="2.11.4"; sha256="0lwlwpm1rjycj8nwiyiiv061bhchgvk231l3l4wrw3x1zif7rwhc"; depends=[AnnotationDbi BiocFileCache biocGraph ComplexHeatmap DESeq2 EDASeq edgeR geneplotter GO_db graph graphite GSEABase hwriter KEGGgraph KEGGREST limma MASS pathview rappdirs ReportingTools Rgraphviz S4Vectors safe SPIA SummarizedExperiment topGO]; }; + EnhancedVolcano = derive2 { name="EnhancedVolcano"; version="0.99.16"; sha256="0r5v611wckw7i6qyd5zhdi7m98hqvypn3zxqy4gbis2khmblnhq0"; depends=[ggplot2 ggrepel]; }; + EnrichedHeatmap = derive2 { name="EnrichedHeatmap"; version="1.11.3"; sha256="1y0w504rvh9zrr8dr57zdrlm8pjv34jcvlvd8d20f11yxc9c82yx"; depends=[circlize ComplexHeatmap GenomicRanges GetoptLong IRanges locfit matrixStats Rcpp]; }; + EnrichmentBrowser = derive2 { name="EnrichmentBrowser"; version="2.11.19"; sha256="15jcfandrlihhiw12w4akdhavr8z1pkg9cd6jb5n88dhm4hb7f72"; depends=[AnnotationDbi BiocFileCache biocGraph BiocManager ComplexHeatmap DESeq2 EDASeq edgeR geneplotter GO_db graph graphite GSEABase hwriter KEGGgraph KEGGREST limma MASS pathview rappdirs ReportingTools Rgraphviz S4Vectors safe SPIA SummarizedExperiment topGO]; }; EpiDISH = derive2 { name="EpiDISH"; version="1.3.0"; sha256="07ln6hyq2lfil1xwackvhb2biay3ig6bvsyf2ll5n3glk938x02d"; depends=[e1071 MASS quadprog]; }; - EventPointer = derive2 { name="EventPointer"; version="1.5.0"; sha256="1fa6xq8kwwbp39whm2xp8si3kz5hfpndlga8mf2jjlj2gd3nf3xj"; depends=[affxparser doParallel foreach GenomeInfoDb GenomicFeatures GenomicRanges graph igraph limma MASS Matrix matrixStats nnls prodlim RBGL S4Vectors SGSeq stringr SummarizedExperiment]; }; + EventPointer = derive2 { name="EventPointer"; version="1.99.3"; sha256="01fbip59zzhy5fg5vr1yw36dbfzcmfr23rfxz7f0r6ymihz892m3"; depends=[affxparser cobs doParallel foreach GenomeInfoDb GenomicFeatures GenomicRanges graph igraph IRanges limma MASS Matrix matrixStats nnls prodlim qvalue RBGL rhdf5 S4Vectors SGSeq stringr SummarizedExperiment]; }; + ExCluster = derive2 { name="ExCluster"; version="0.99.13"; sha256="1f9qw645bir2sxb3h3pzswhjm6p1fd2dlj6bmlsqlb9awxsj8r47"; depends=[GenomicRanges IRanges matrixStats Rsubread rtracklayer]; }; ExiMiR = derive2 { name="ExiMiR"; version="2.23.0"; sha256="01syzl0q719fif0pdhn31hrwpbq14idwpyppcwl0b0156aid7lwv"; depends=[affy affyio Biobase limma preprocessCore]; }; - ExperimentHub = derive2 { name="ExperimentHub"; version="1.7.1"; sha256="0jy93f8dy5mmmc0hdd97h4di4660878gfi7mhjwk7rhldrcsm8jh"; depends=[AnnotationHub BiocGenerics BiocInstaller curl S4Vectors]; }; - ExperimentHubData = derive2 { name="ExperimentHubData"; version="1.7.0"; sha256="0gwv7zjdwhsxi992qxhds7rbha3xlqfix6cxnipx53gi72cl5plm"; depends=[AnnotationHubData BiocCheck BiocGenerics BiocInstaller curl DBI ExperimentHub httr S4Vectors]; }; + ExperimentHub = derive2 { name="ExperimentHub"; version="1.7.7"; sha256="002wzd5nll3vxncqqq95slsadj40gdj6bd59qhdhz4v6gz005h60"; depends=[AnnotationHub BiocGenerics BiocManager curl S4Vectors]; }; + ExperimentHubData = derive2 { name="ExperimentHubData"; version="1.7.5"; sha256="1q6pc9hl5q7r8vmpk1ixb95xjh6lbikab76yhjp89xzapiprd1sl"; depends=[AnnotationHubData BiocCheck BiocGenerics BiocManager biocViews curl DBI ExperimentHub graph httr S4Vectors]; }; ExpressionAtlas = derive2 { name="ExpressionAtlas"; version="1.9.1"; sha256="0pg30fbiz2q45b06p5jmav4gncbl01003m9m8lk2ifi0sxvx4jn6"; depends=[Biobase httr limma S4Vectors SummarizedExperiment XML xml2]; }; ExpressionView = derive2 { name="ExpressionView"; version="1.33.0"; sha256="14h6jgdaikyjpf5bqban0ixscw3k28pczh0bsvnkhyb5916qfxch"; depends=[AnnotationDbi bitops caTools eisa GO_db isa2 KEGG_db]; }; - FELLA = derive2 { name="FELLA"; version="1.1.1"; sha256="0vqq9bzdy691c11rb2dbgvv0nwqqy8wdd397wjh991lfk3f4n3bz"; depends=[igraph KEGGREST Matrix plyr]; }; - FEM = derive2 { name="FEM"; version="3.9.0"; sha256="0nb9gp6x1crzrj9jgz7s6mq639iqp7zdf1q7qqv0ri3gcgw758jw"; depends=[AnnotationDbi BiocGenerics corrplot graph igraph impute limma marray Matrix org_Hs_eg_db]; }; + FCBF = derive2 { name="FCBF"; version="0.99.3"; sha256="0drpbnx5sampabr17rwjj7biw5bpngdmrrma2p3h5yq5llb409jr"; depends=[ggplot2 gridExtra SummarizedExperiment]; }; + FELLA = derive2 { name="FELLA"; version="1.1.6"; sha256="1d284qaz74d7lgxl3gn0c9i6a33x6j0xf9sbjbpm8bpl0kbhr0ln"; depends=[igraph KEGGREST Matrix plyr]; }; + FEM = derive2 { name="FEM"; version="3.9.2"; sha256="0nbg1rbx7gszbqf0xjibsgwapjrv8lniiv7kw0j50ppab69qxiqq"; depends=[AnnotationDbi BiocGenerics corrplot graph igraph impute limma marray Matrix org_Hs_eg_db]; }; + FGNet = derive2 { name="FGNet"; version="3.15.4"; sha256="1pnadm9c3ckdd5k9jgq3jmfny8mfc3w7j5w08vn0khnqlq9cp3x8"; depends=[hwriter igraph plotrix png R_utils RColorBrewer reshape2 XML]; }; FISHalyseR = derive2 { name="FISHalyseR"; version="1.15.0"; sha256="0izn77dhzhsg69i893r9sy6qalw4qr120m6k5x5k6z9w01dgq47x"; depends=[abind EBImage]; }; - FRGEpistasis = derive2 { name="FRGEpistasis"; version="1.17.0"; sha256="1m3vcffnbyf27x481gx4xmxrknb70dk0ll08zd14kfvn6lf3cgf4"; depends=[fda MASS]; }; + FRGEpistasis = derive2 { name="FRGEpistasis"; version="1.17.1"; sha256="17qmq5mgqhfzw3v4gl9waa1ni6h8llz2hz63p3mwrx1yixinsn20"; depends=[fda MASS]; }; FamAgg = derive2 { name="FamAgg"; version="1.9.0"; sha256="1vqkaa1cpzd2cdyql66skz3jkrnp5ibdbhwipkj82dgww9zwwkbx"; depends=[BiocGenerics gap igraph kinship2 Matrix survey]; }; - FastqCleaner = derive2 { name="FastqCleaner"; version="0.99.39"; sha256="18zklgacbk8iv8i6rlmip8bcfwn9v18jpf4xb9p7pkadldphjnfc"; depends=[Biostrings DT htmltools IRanges Rcpp S4Vectors shiny shinyBS ShortRead]; }; - FindMyFriends = derive2 { name="FindMyFriends"; version="1.11.0"; sha256="0ij596qkpn4y5m9zmj6hcamrmjjm8nwqjm9d2g1wq28i5xrmra0w"; depends=[Biobase BiocGenerics BiocParallel Biostrings digest dplyr filehash ggdendro ggplot2 gtable igraph IRanges kebabs Matrix Rcpp reshape2 S4Vectors]; }; - FitHiC = derive2 { name="FitHiC"; version="1.7.0"; sha256="071246cfl4iqy3nnl2c24n8sd9dkmjjj8cna74dh1km3cc6xb0vz"; depends=[data_table fdrtool Rcpp]; }; - FlowRepositoryR = derive2 { name="FlowRepositoryR"; version="1.13.0"; sha256="09kqhj41w7snkr1m29wmjj4n7acy821mv8kbb49f1mljaxz0v94q"; depends=[jsonlite RCurl XML]; }; + FastqCleaner = derive2 { name="FastqCleaner"; version="0.99.40"; sha256="1hfrlr3lwcqvb1c5w6n5ffml5znjil4dchhcz4jwm2qnf6zcha0n"; depends=[Biostrings DT htmltools IRanges Rcpp S4Vectors shiny shinyBS ShortRead]; }; + FindMyFriends = derive2 { name="FindMyFriends"; version="1.11.2"; sha256="0mxpv5c2fyvcxwzaiig9qy8lg78fd8ms35nchd86nj1n4265kkx2"; depends=[Biobase BiocGenerics BiocParallel Biostrings digest dplyr filehash ggdendro ggplot2 gtable igraph IRanges kebabs Matrix Rcpp reshape2 S4Vectors]; }; + FitHiC = derive2 { name="FitHiC"; version="1.7.1"; sha256="07d3lywhc665qm3kp6f89dnvjvkgsdsvqk0ms6b3w402j12jvxsb"; depends=[data_table fdrtool Rcpp]; }; + FlowRepositoryR = derive2 { name="FlowRepositoryR"; version="1.13.1"; sha256="1vbc2bl5afa2zvqj8xp4ajdij44732689n1c28i1s32y92wzgjng"; depends=[jsonlite RCurl XML]; }; FlowSOM = derive2 { name="FlowSOM"; version="1.13.0"; sha256="0vw98kxlcyd9rwa2r9rgjwfp5f5pmb122w2xk1gfhsf9kqh7db7g"; depends=[BiocGenerics ConsensusClusterPlus flowCore flowUtils igraph tsne XML]; }; + FoldGO = derive2 { name="FoldGO"; version="0.99.10"; sha256="0df75rvpc0031rjrx5pwfwprm1nrli2l2yafa8jbqnycz02z0dz4"; depends=[ggplot2 tidyr topGO]; }; FourCSeq = derive2 { name="FourCSeq"; version="1.15.0"; sha256="0d8qnalv97a37l0xqxi4qi7s03zxs81122h4rw6rpi03pn5h7i10"; depends=[Biobase Biostrings DESeq2 fda GenomicAlignments GenomicRanges ggbio ggplot2 gtools LSD Matrix reshape2 Rsamtools rtracklayer SummarizedExperiment]; }; FunChIP = derive2 { name="FunChIP"; version="1.7.0"; sha256="15pfl68yynvidx9r69xxf3zavn79savabam5yjjwqq7g9yvhzjw5"; depends=[doParallel fda foreach GenomeInfoDb GenomicAlignments GenomicRanges RColorBrewer Rcpp Rsamtools shiny]; }; - FunciSNP = derive2 { name="FunciSNP"; version="1.25.0"; sha256="0dl63s5f8s82www9maf10bbmss7ddbflq820lcq1zgrfcdr9a484"; depends=[Biobase BiocGenerics ChIPpeakAnno FunciSNP_data GenomicRanges ggplot2 IRanges plyr reshape Rsamtools rtracklayer S4Vectors scales snpStats TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation]; }; + FunciSNP = derive2 { name="FunciSNP"; version="1.25.3"; sha256="0w9wqlkj52dwzrhxwq193435camj12kjv1a70rdnzdlvi3y849hm"; depends=[Biobase BiocGenerics ChIPpeakAnno FunciSNP_data GenomicRanges ggplot2 IRanges plyr reshape Rsamtools rtracklayer S4Vectors scales snpStats TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation]; }; GA4GHclient = derive2 { name="GA4GHclient"; version="1.5.0"; sha256="1bcskcxcmv47rdgrw0i8rm4cn27jqy86rx8z83qnanbzqp4g7kgg"; depends=[BiocGenerics Biostrings dplyr GenomeInfoDb GenomicRanges httr IRanges jsonlite S4Vectors VariantAnnotation]; }; GA4GHshiny = derive2 { name="GA4GHshiny"; version="1.3.0"; sha256="031p9qa6cp4gxlgp8whswl7b11d24d4zl3m9fkqg3i461kjyswxj"; depends=[AnnotationDbi BiocGenerics dplyr DT GA4GHclient GenomeInfoDb GenomicFeatures openxlsx purrr S4Vectors shiny shinyjs shinythemes tidyr]; }; - GARS = derive2 { name="GARS"; version="1.1.0"; sha256="0qczfvlywnqiz06ggvndmq32sg61qm7njg77fzml5v66anqsqmhq"; depends=[cluster DaMiRseq ggplot2 MLSeq SummarizedExperiment]; }; + GARS = derive2 { name="GARS"; version="1.1.1"; sha256="004i5nkmdi61fkkxps1frlhs4gd8ix6s3yypzrl6s4afvm05hw4p"; depends=[cluster DaMiRseq ggplot2 MLSeq SummarizedExperiment]; }; GAprediction = derive2 { name="GAprediction"; version="1.7.0"; sha256="04bxpyc13mq7klkpkyw574cbk6xsjn9n91za7hvmzg5xfzgdr2rg"; depends=[glmnet Matrix]; }; - GDCRNATools = derive2 { name="GDCRNATools"; version="1.1.0"; sha256="0i8gyq3rk79ph099bivgrvl33c73vhrlqss0ms61zv8r392prvjh"; depends=[BiocParallel biomaRt clusterProfiler DESeq2 DOSE DT edgeR GenomicDataCommons ggplot2 gplots jsonlite limma org_Hs_eg_db pathview rjson shiny survival survminer XML]; }; - GDSArray = derive2 { name="GDSArray"; version="1.1.0"; sha256="0jn3jjpr5z3nrhral7bphlxnc5mhg2nllpzf73j2i4q7dbyhjxic"; depends=[BiocGenerics DelayedArray gdsfmt IRanges S4Vectors SeqArray SNPRelate]; }; - GEM = derive2 { name="GEM"; version="1.7.0"; sha256="01vyj5nhzs6g3drnybl5i5wj2n2x50wjfnb2q62r053rz7r4xpwj"; depends=[ggplot2]; }; - GENESIS = derive2 { name="GENESIS"; version="2.11.5"; sha256="1vkxb4ry8ghl9c38lr5dkwkf5kjak0h0vq18k69fpj94dfkkn91y"; depends=[Biobase BiocGenerics dplyr gdsfmt GenomicRanges graph GWASTools IRanges Matrix S4Vectors SeqArray SeqVarTools]; }; + GDCRNATools = derive2 { name="GDCRNATools"; version="1.1.9"; sha256="134f9264b1br2s2d99dlad1r8nwzkv78qkr7iqym8s1anl7xsh9j"; depends=[BiocParallel biomaRt clusterProfiler DESeq2 DOSE DT edgeR GenomicDataCommons ggplot2 gplots jsonlite limma org_Hs_eg_db pathview rjson shiny survival survminer XML]; }; + GDSArray = derive2 { name="GDSArray"; version="1.1.1"; sha256="0cgs1fhzqax8nbihifhmgd6clk4wf3586x85cmg06ydxdh9yyzlv"; depends=[BiocGenerics DelayedArray gdsfmt S4Vectors SeqArray SNPRelate]; }; + GEM = derive2 { name="GEM"; version="1.7.1"; sha256="0sxlqkd2rhi511jmi2c82ib0krx9pynssvw0gcr2mrrxj5gy2vcz"; depends=[ggplot2]; }; + GENESIS = derive2 { name="GENESIS"; version="2.11.17"; sha256="1czvvmqnmpx9wpq6hw4xfwhj1vjrwdrwbj8b4zcs1x7dv8qkvyb5"; depends=[Biobase BiocGenerics data_table dplyr foreach gdsfmt GenomicRanges GWASTools igraph IRanges Matrix reshape2 S4Vectors SeqArray SeqVarTools SNPRelate]; }; GENIE3 = derive2 { name="GENIE3"; version="1.3.1"; sha256="0zp1g97xmigjarpbmfnay1gac5fjhcslrdp656gzafdah32k2nzl"; depends=[reshape2]; }; GEOmetadb = derive2 { name="GEOmetadb"; version="1.43.0"; sha256="05ad0h84vqkcp9b9966dsmgwl4r2xsg9wjjgwcfx00yc9jgg94lj"; depends=[GEOquery RSQLite]; }; - GEOquery = derive2 { name="GEOquery"; version="2.49.0"; sha256="0ylny4lni33hj1qspqig7iw9g3h9mz4yc9bj8cdf13w2qj4sjysz"; depends=[Biobase dplyr httr limma magrittr readr tidyr xml2]; }; + GEOquery = derive2 { name="GEOquery"; version="2.49.1"; sha256="1vxhz9drmj90j67ga7jflzb602bs1b9qdamz7vgazlpl0xj7ls5s"; depends=[Biobase dplyr httr limma magrittr readr tidyr xml2]; }; GEOsubmission = derive2 { name="GEOsubmission"; version="1.33.0"; sha256="17qck1a7szkgaixkjzq2c4vw7kb7cy8sv609z3i8h0pljrprvx07"; depends=[affy Biobase]; }; GEWIST = derive2 { name="GEWIST"; version="1.25.0"; sha256="0dr7vz9v8cfjg8vxxqs0c7i4vzvfdnp741b82radwb0ya4crfml0"; depends=[car]; }; GGBase = derive2 { name="GGBase"; version="3.43.2"; sha256="1kwh6di0kgw821mh0gmgrm8b0mlbcyji5yc0pn4v836w0wc0amqb"; depends=[AnnotationDbi Biobase BiocGenerics digest genefilter GenomicRanges IRanges limma Matrix S4Vectors snpStats SummarizedExperiment]; }; - GGtools = derive2 { name="GGtools"; version="5.17.0"; sha256="06qldw101w7syy1m9ynq9rpxs2546yzn8zdmsp416aawn3qw2xjb"; depends=[AnnotationDbi biglm Biobase BiocGenerics Biostrings bit data_table ff GenomeInfoDb GenomicRanges GGBase ggplot2 Gviz hexbin Homo_sapiens IRanges iterators reshape2 ROCR Rsamtools rtracklayer S4Vectors snpStats VariantAnnotation]; }; + GGtools = derive2 { name="GGtools"; version="5.17.1"; sha256="1p7wczch0nnb5ax5g1889iz3qr5ffwyhgvlrln19ypb20c454cnk"; depends=[AnnotationDbi biglm Biobase BiocGenerics Biostrings bit data_table ff GenomeInfoDb GenomicRanges GGBase ggplot2 Gviz hexbin Homo_sapiens IRanges iterators reshape2 ROCR Rsamtools rtracklayer S4Vectors snpStats VariantAnnotation]; }; GIGSEA = derive2 { name="GIGSEA"; version="0.99.25"; sha256="0k6njipzq9r6g9gkn9g2blkmhq752yv4n2127wxvxfi4kkwf8nfc"; depends=[locfdr MASS Matrix]; }; GISPA = derive2 { name="GISPA"; version="1.5.0"; sha256="1030cwbkccj2scjmszlzbxd28qgwga26hf86jly8xmw9qvpa77y1"; depends=[Biobase changepoint data_table genefilter GSEABase HH lattice latticeExtra plyr scatterplot3d]; }; GLAD = derive2 { name="GLAD"; version="2.45.1"; sha256="1cpjai8dxqb35xf2933rf4z08zmli760scz6s1zdzbgpc92dl2zl"; depends=[aws]; }; GMRP = derive2 { name="GMRP"; version="1.9.0"; sha256="06q87139z5dgl0c4i8jhry15q9ah9k19kgjmadkb55lfsb3akazn"; depends=[diagram GenomicRanges plotrix]; }; - GOFunction = derive2 { name="GOFunction"; version="1.29.0"; sha256="08xyzk6hs3v263k949l94g6xq9lg5k86yzgqr89bmcyinsxlqk1j"; depends=[AnnotationDbi Biobase DBI GO_db graph Rgraphviz SparseM]; }; - GOSemSim = derive2 { name="GOSemSim"; version="2.7.0"; sha256="1qxvx4mk49k5d51xnvxn8wsw6dsidskpx6qddnm42ls9a4d9cypd"; depends=[AnnotationDbi GO_db Rcpp]; }; + GOFunction = derive2 { name="GOFunction"; version="1.29.1"; sha256="05yz8kl6m3ypdvi5mb813nvc8s75ybbc16ppdza6pkrf5cdawy55"; depends=[AnnotationDbi Biobase DBI GO_db graph Rgraphviz SparseM]; }; + GOSemSim = derive2 { name="GOSemSim"; version="2.7.1"; sha256="1q1h4ak6ki9hn9psrx17psf7kmcn2c7jy5q428qvwk4raq5fhdh0"; depends=[AnnotationDbi GO_db Rcpp]; }; GOSim = derive2 { name="GOSim"; version="1.19.0"; sha256="0irpycjkzzdymg50zf2szgf7v4s2s0skfpjf5ckdrzskkjr2jzc1"; depends=[annotate AnnotationDbi cluster corpcor flexmix GO_db graph Matrix org_Hs_eg_db RBGL Rcpp topGO]; }; - GOTHiC = derive2 { name="GOTHiC"; version="1.17.0"; sha256="0n0h9k190p1glmvlrdpa5xdxj797mfdzb109yj5wy981s5q11gpb"; depends=[BiocGenerics Biostrings BSgenome data_table GenomicRanges ggplot2 IRanges Rsamtools rtracklayer S4Vectors ShortRead]; }; + GOTHiC = derive2 { name="GOTHiC"; version="1.17.1"; sha256="00na8sn5fszb9z0z58xwlrxzwvxsahhisn2sc8g6xqcfld231pfr"; depends=[BiocGenerics Biostrings BSgenome data_table GenomicRanges ggplot2 IRanges Rsamtools rtracklayer S4Vectors ShortRead]; }; GOexpress = derive2 { name="GOexpress"; version="1.15.0"; sha256="0k1hiinzn4553gh6app0kvd84md0g3jydv1y2rlzrcasamba7xvv"; depends=[Biobase biomaRt ggplot2 gplots randomForest RColorBrewer RCurl stringr]; }; - GOfuncR = derive2 { name="GOfuncR"; version="1.1.2"; sha256="0w2f866j82qcyvjj2cn9cqmaxx0sijywbxhsqfkvrsr8vbkhbmgi"; depends=[AnnotationDbi GenomicRanges gtools IRanges mapplots Rcpp vioplot]; }; - GOpro = derive2 { name="GOpro"; version="1.7.0"; sha256="07qpvf17w1cq8qxdg0xdygdgnk9dc15ar7422q0y54kcgnfq0zj4"; depends=[AnnotationDbi BH dendextend doParallel foreach GO_db IRanges MultiAssayExperiment org_Hs_eg_db Rcpp S4Vectors]; }; + GOfuncR = derive2 { name="GOfuncR"; version="1.1.6"; sha256="10bvn7hq8igd1wj4izg6nb06v4dn88gc65r7pq02z29dz1n5rbnv"; depends=[AnnotationDbi GenomicRanges gtools IRanges mapplots Rcpp vioplot]; }; + GOpro = derive2 { name="GOpro"; version="1.7.1"; sha256="0np0df5nfgcr435ngs8bbfiklp8b3v01842jkfdf2wwasx7c4mlw"; depends=[AnnotationDbi BH dendextend doParallel foreach GO_db IRanges MultiAssayExperiment org_Hs_eg_db Rcpp S4Vectors]; }; GOstats = derive2 { name="GOstats"; version="2.47.0"; sha256="1dxzr3xnn60iy2xv8k0j1r9bz1lq1g1n792gzl308dsy35p25cim"; depends=[annotate AnnotationDbi AnnotationForge Biobase Category GO_db graph RBGL Rgraphviz]; }; + GOsummaries = derive2 { name="GOsummaries"; version="2.17.2"; sha256="1ndpqr43rs3wrsrm5i0bn4xhcjylpddf95vnmyzq3rn3vc0y89sd"; depends=[ggplot2 gProfileR gtable limma plyr Rcpp reshape2]; }; GRENITS = derive2 { name="GRENITS"; version="1.33.0"; sha256="1jgsk0wcrkcvf6cgypmdyj6zjfxwxan5xm88l1ycdrilfrx1g582"; depends=[ggplot2 Rcpp RcppArmadillo reshape2]; }; - GRmetrics = derive2 { name="GRmetrics"; version="1.7.0"; sha256="1vbnbn7r4fjv2p2qn5681kg0yqj5s1k4hf5jj52qgzjrp2qs4s6l"; depends=[drc ggplot2 plotly S4Vectors SummarizedExperiment]; }; - GRridge = derive2 { name="GRridge"; version="1.5.0"; sha256="10kz82nj90ilkj6wlsfvqlqrikgm5qw95m02xn99vghs4bj3yh0d"; depends=[glmnet graph Iso mvtnorm penalized survival]; }; + GRmetrics = derive2 { name="GRmetrics"; version="1.7.3"; sha256="1xnbfqqw63inh1fyfclb369b6j3ihn6jnvglkmrvp609x104sakb"; depends=[drc ggplot2 plotly S4Vectors SummarizedExperiment]; }; + GRridge = derive2 { name="GRridge"; version="1.5.3"; sha256="1bdv13j5vk38mrj06dms6xgyl21xqf5rzp8f5y8p7a0q36npflcr"; depends=[glmnet graph Iso mvtnorm penalized survival]; }; GSALightning = derive2 { name="GSALightning"; version="1.9.0"; sha256="1qwq8yawf0llik4880y9j3qzbl9py404wrp6p2738qjb1mxyx9nr"; depends=[data_table Matrix]; }; - GSAR = derive2 { name="GSAR"; version="1.15.0"; sha256="0i1rapjvdyw596vaqvsk49qbbrjnz1pam34559ws767r70vp0nng"; depends=[igraph]; }; - GSCA = derive2 { name="GSCA"; version="2.11.0"; sha256="1w3028l6bj92phwhnxs71vxc1wn1bbqac37f4anr8wrxw1bvngid"; depends=[ggplot2 gplots RColorBrewer reshape2 rhdf5 shiny sp]; }; - GSEABase = derive2 { name="GSEABase"; version="1.43.0"; sha256="0f1rh227kx0wxndvgc283jfml5v2zmf184ajghflpq2crhv0sj7j"; depends=[annotate AnnotationDbi Biobase BiocGenerics graph XML]; }; - GSEABenchmarkeR = derive2 { name="GSEABenchmarkeR"; version="1.1.0"; sha256="1ykpinxwz9hqpb8wjrv8jwcq4gmnjkmxg4b8akgdwlypv766smgj"; depends=[AnnotationDbi AnnotationHub Biobase BiocFileCache BiocParallel edgeR EnrichmentBrowser ExperimentHub GEOquery KEGGandMetacoreDzPathwaysGEO KEGGdzPathwaysGEO rappdirs S4Vectors SummarizedExperiment]; }; + GSAR = derive2 { name="GSAR"; version="1.15.1"; sha256="185ywirc49x7dy3vzy346avzsc16xjzsdr4njfr7f5bc421xkyxz"; depends=[igraph]; }; + GSCA = derive2 { name="GSCA"; version="2.11.1"; sha256="1ahkd5ivr38c4igmwdr5fk5kaysw3128a4y15ydz2ab2488vgsd4"; depends=[ggplot2 gplots RColorBrewer reshape2 rhdf5 shiny sp]; }; + GSEABase = derive2 { name="GSEABase"; version="1.43.2"; sha256="1zhzvcjv9m9d0qmhf5csafq5inb1czkmwxm1ivyh2zrn2a66f8kl"; depends=[annotate AnnotationDbi Biobase BiocGenerics graph XML]; }; + GSEABenchmarkeR = derive2 { name="GSEABenchmarkeR"; version="1.1.1"; sha256="102hvayxljl0nk4593aw0hdpdr929v5yhknyppnxyqrnmply8vqp"; depends=[AnnotationDbi AnnotationHub Biobase BiocFileCache BiocParallel edgeR EnrichmentBrowser ExperimentHub GEOquery KEGGandMetacoreDzPathwaysGEO KEGGdzPathwaysGEO rappdirs S4Vectors SummarizedExperiment]; }; GSEAlm = derive2 { name="GSEAlm"; version="1.41.0"; sha256="1di0d7zpsigi6k4bxfnq0yniyssxrmzdih3xayg6facpwgyhkp6n"; depends=[Biobase]; }; GSRI = derive2 { name="GSRI"; version="2.29.0"; sha256="0g3nncckasyx3n6nq5aihahzk73h6xb1m8xmq3m046vz245ny76x"; depends=[Biobase fdrtool genefilter GSEABase les]; }; GSReg = derive2 { name="GSReg"; version="1.15.0"; sha256="1qazhsx6gfnywwkhxip962v4jr5njbf97k36nbnq20q0yavwgzhz"; depends=[AnnotationDbi GenomicFeatures Homo_sapiens org_Hs_eg_db]; }; - GSVA = derive2 { name="GSVA"; version="1.29.0"; sha256="1yay4qw83jfpg1sskh8aizwblj1cxvjb974s7hbrc9a8z0dlkcnn"; depends=[Biobase BiocGenerics geneplotter GSEABase shiny shinythemes]; }; + GSVA = derive2 { name="GSVA"; version="1.29.3"; sha256="12x52iq2c9y7y3hfza849754xf8z8ysh41dk0id7dy9mbjawvz7d"; depends=[Biobase BiocGenerics geneplotter GSEABase shiny shinythemes]; }; GUIDEseq = derive2 { name="GUIDEseq"; version="1.11.0"; sha256="1qxb0mrrldyac16zfzkqcy11750hakr4hgqm8ai1cabr6xd5yna1"; depends=[BiocGenerics BiocParallel Biostrings BSgenome ChIPpeakAnno CRISPRseek data_table GenomeInfoDb GenomicAlignments GenomicRanges hash IRanges limma matrixStats Rsamtools S4Vectors]; }; - GWASTools = derive2 { name="GWASTools"; version="1.27.1"; sha256="1w0magisa8rv0s1kppppas3lacrkmkg7finjc3bja1dh3npd1v5j"; depends=[Biobase DBI DNAcopy gdsfmt GWASExactHW lmtest logistf quantsmooth RSQLite sandwich survival]; }; + GWASTools = derive2 { name="GWASTools"; version="1.27.3"; sha256="0snjz7vqfq5izfk68z3r7d0356almksxbsc79m2ryk7mkfjfw5bx"; depends=[Biobase DBI DNAcopy gdsfmt GWASExactHW lmtest logistf quantsmooth RSQLite sandwich survival]; }; GateFinder = derive2 { name="GateFinder"; version="1.1.0"; sha256="1blj8407nl6nsn8dyg31xj4ii8rr2rfkg35g1hf97j60dk53bmwf"; depends=[diptest flowCore flowFP mvoutlier splancs]; }; GenRank = derive2 { name="GenRank"; version="1.9.0"; sha256="05g9mram44zs76m48rvplwdhdlhkygfxrzgdsd43was2xvyj6nvb"; depends=[matrixStats reshape2 survcomp]; }; GenVisR = derive2 { name="GenVisR"; version="1.13.2"; sha256="1ca47n9ddnm20vjj7070wfmmd9ff8w58d5rd79sq23hszmzwyzlf"; depends=[AnnotationDbi BiocGenerics biomaRt Biostrings BSgenome data_table DBI FField GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gridExtra gtable gtools IRanges plyr reshape2 Rsamtools scales VariantAnnotation viridis]; }; - GeneAnswers = derive2 { name="GeneAnswers"; version="2.23.0"; sha256="08fgg33yls55357a45zfcghk87z7z2lqzh8wfiina122yg29c7ss"; depends=[annotate Biobase downloader Heatplus igraph MASS RBGL RColorBrewer RCurl RSQLite XML]; }; - GeneBreak = derive2 { name="GeneBreak"; version="1.11.0"; sha256="1nw97k4cxd7l35r14jq5mf46wa4rlfm2zg28x176z6wh0jlz4gba"; depends=[CGHbase CGHcall GenomicRanges QDNAseq]; }; + GeneAccord = derive2 { name="GeneAccord"; version="0.99.13"; sha256="1rw3wrgvqxznia7p0vm55dkq5rfks1gq5nixcf4ljzd9kcwc4ggs"; depends=[biomaRt caTools dplyr ggplot2 ggpubr gtools magrittr maxLik RColorBrewer reshape2 tibble]; }; + GeneAnswers = derive2 { name="GeneAnswers"; version="2.23.1"; sha256="0nxilnnhb48jwbplwhndwd8y5rlmhyjfjywc1whcij3hz9f6yzp9"; depends=[annotate Biobase downloader Heatplus igraph MASS RBGL RColorBrewer RCurl RSQLite XML]; }; + GeneBreak = derive2 { name="GeneBreak"; version="1.11.1"; sha256="0pyvj6grznl5qjki857zfhqcn05xwhicm6l1jxa1jc0aav91y764"; depends=[CGHbase CGHcall GenomicRanges QDNAseq]; }; GeneExpressionSignature = derive2 { name="GeneExpressionSignature"; version="1.27.0"; sha256="0bmhxzrg5d7v4lv4k2igl7ah8fncrggyziwqyhawavig17i1iqzc"; depends=[Biobase PGSEA]; }; GeneGA = derive2 { name="GeneGA"; version="1.31.0"; sha256="0fdfb6x7rjg4ak5xbikwj6fmmrnr3hnsi97amn69w81087228b5g"; depends=[hash seqinr]; }; GeneGeneInteR = derive2 { name="GeneGeneInteR"; version="1.7.0"; sha256="03kkfv7vj717brzdw346yapxfg414v84wncqqrv3si03q4w450mz"; depends=[data_table FactoMineR GenomicRanges GGtools igraph IRanges kernlab mvtnorm plspm rioja Rsamtools snpStats]; }; GeneMeta = derive2 { name="GeneMeta"; version="1.53.0"; sha256="18f1nca21drjpv55b4d92zkgqr3zqhzp98slq6xfqvsj3rip6y5v"; depends=[Biobase genefilter]; }; - GeneNetworkBuilder = derive2 { name="GeneNetworkBuilder"; version="1.23.0"; sha256="1076pgsykk88dswza9m1bbh1nzvb5l1680h0q971vdvy1z1sks4c"; depends=[graph htmlwidgets plyr Rcpp Rgraphviz rjson XML]; }; + GeneNetworkBuilder = derive2 { name="GeneNetworkBuilder"; version="1.23.2"; sha256="1nikjknsfy99i3b3r384gjlw8rzk4wv1wqflwpnrnffvzxh3sr5d"; depends=[graph htmlwidgets plyr Rcpp Rgraphviz rjson XML]; }; GeneOverlap = derive2 { name="GeneOverlap"; version="1.17.0"; sha256="0dqsq1sd1ly6gvnpq3xcv9idr30kazx97jha9icv1g64d337l289"; depends=[gplots RColorBrewer]; }; GeneRegionScan = derive2 { name="GeneRegionScan"; version="1.37.0"; sha256="1672nriz5r0gpgb6c9bsa864ap3ap68n1igvpf9q8mf3sw659m3b"; depends=[affxparser Biobase Biostrings RColorBrewer S4Vectors]; }; GeneSelectMMD = derive2 { name="GeneSelectMMD"; version="2.25.0"; sha256="1lwszjpxp9bj0hd5z1kasq2qv49swji3ib1ljlph22wh0j9jimid"; depends=[Biobase limma MASS survival]; }; - GeneSelector = derive2 { name="GeneSelector"; version="2.31.0"; sha256="134l462i60mym5k4z46nfx1f7r2r0fa069v1jddrjfmcv3v0gbs8"; depends=[Biobase limma multtest samr siggenes]; }; + GeneSelector = derive2 { name="GeneSelector"; version="2.31.2"; sha256="1z346x227rs0nlyzf1idmcb2s05fhp68i3cjiib2d2328fs0yzyw"; depends=[Biobase limma multtest samr siggenes]; }; GeneStructureTools = derive2 { name="GeneStructureTools"; version="1.1.0"; sha256="0w8ydly5qi8cvdhhda2q3k8fj9k9v1sg3c45h4ki02vx19j2kap0"; depends=[Biostrings BSgenome_Mmusculus_UCSC_mm10 data_table GenomicRanges Gviz IRanges plyr rtracklayer S4Vectors stringdist stringr]; }; GeneticsDesign = derive2 { name="GeneticsDesign"; version="1.49.0"; sha256="1n9d1i45dcmp2irnsc5ak9pk33r68nzd84iixylwaj302l7yphjs"; depends=[gmodels gtools mvtnorm]; }; GeneticsPed = derive2 { name="GeneticsPed"; version="1.43.1"; sha256="0agd99r4jhp4y2ix5qrbwrycy3r8pc1cwa09ib3mhg5jdszm6jr8"; depends=[gdata genetics MASS]; }; - GenoGAM = derive2 { name="GenoGAM"; version="1.9.0"; sha256="02f7xvsv4l27dqj6cxm363n67kkbyz26z36gl4mybcgivvdvmi6h"; depends=[BiocParallel Biostrings data_table DESeq2 futile_logger GenomeInfoDb GenomicAlignments GenomicRanges IRanges mgcv reshape2 Rsamtools S4Vectors SummarizedExperiment]; }; + GenoGAM = derive2 { name="GenoGAM"; version="1.99.0"; sha256="18s3hh2gis61sakld098ffpihy2fd11sia94cxxq9cy0wl49bzci"; depends=[BiocParallel Biostrings data_table DelayedArray DESeq2 futile_logger GenomeInfoDb GenomicAlignments GenomicRanges HDF5Array IRanges Matrix Rcpp RcppArmadillo rhdf5 Rsamtools S4Vectors sparseinv SummarizedExperiment]; }; GenomeGraphs = derive2 { name="GenomeGraphs"; version="1.41.0"; sha256="07vwj2pbrxgj3k673m8xrf3cpqc1g753fvj950qwmy4jmz6s8w04"; depends=[biomaRt]; }; - GenomeInfoDb = derive2 { name="GenomeInfoDb"; version="1.17.1"; sha256="1ck578vgv3ya4kgdacxspiqrx8150zic0va745f98gafx2cv7b66"; depends=[BiocGenerics GenomeInfoDbData IRanges RCurl S4Vectors]; }; - GenomicAlignments = derive2 { name="GenomicAlignments"; version="1.17.2"; sha256="0n3rl6mlyn1q4rjbjh8dlbq7sy192jc2zy3y4qlaacmmfrw4sv5h"; depends=[BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors SummarizedExperiment]; }; - GenomicDataCommons = derive2 { name="GenomicDataCommons"; version="1.5.3"; sha256="0nagrdckv853kfqrajs8jr2zhmmipnw36nsa8nr796y6q7ldq492"; depends=[dplyr GenomicRanges httr IRanges jsonlite lazyeval magrittr rappdirs readr S4Vectors SummarizedExperiment xml2]; }; - GenomicFeatures = derive2 { name="GenomicFeatures"; version="1.33.0"; sha256="1dnj1drlly4ac6q29zycvyjaw50fl6l1iqwhsn5syvywb5ccmgh5"; depends=[AnnotationDbi Biobase BiocGenerics biomaRt Biostrings DBI GenomeInfoDb GenomicRanges IRanges RCurl RSQLite rtracklayer S4Vectors XVector]; }; - GenomicFiles = derive2 { name="GenomicFiles"; version="1.17.0"; sha256="08zjr3x7sn5fpqfl021vc8imdprd18hanyq7c2gwn5r0y30cyxrp"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; - GenomicInteractions = derive2 { name="GenomicInteractions"; version="1.15.0"; sha256="0p2nsfwfxkl16iwv5apaikd6abbi21czdy7wh9kkyb4frh2938yd"; depends=[Biobase BiocGenerics data_table dplyr GenomeInfoDb GenomicRanges ggplot2 gridExtra Gviz igraph InteractionSet IRanges Rsamtools rtracklayer S4Vectors stringr]; }; - GenomicRanges = derive2 { name="GenomicRanges"; version="1.33.6"; sha256="07allayr8aflgra393xikfd5zs1s8b2yrsw308dqdxjyc0i3497i"; depends=[BiocGenerics GenomeInfoDb IRanges S4Vectors XVector]; }; - GenomicScores = derive2 { name="GenomicScores"; version="1.5.1"; sha256="1pkisnqp2rwdyxxm5504107scc0kds0ry07xmx451bn1i52lg3n1"; depends=[AnnotationHub Biobase BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors XML]; }; - GenomicTuples = derive2 { name="GenomicTuples"; version="1.15.1"; sha256="1xin5m11q94w64kcb6aqsi422cgbcagb0g45ir90dqf9d79v8vjz"; depends=[BiocGenerics data_table GenomeInfoDb GenomicRanges IRanges Rcpp S4Vectors]; }; + GenomeInfoDb = derive2 { name="GenomeInfoDb"; version="1.17.4"; sha256="1kma1ywai2l8lknng1hpp5nxgv45rwiih0ac9nxmg5ydb910m2z0"; depends=[BiocGenerics GenomeInfoDbData IRanges RCurl S4Vectors]; }; + GenomicAlignments = derive2 { name="GenomicAlignments"; version="1.17.3"; sha256="17kdllb2griy85qdk8nkx1qislc424kpibsrfb2pirf6xjm82rxn"; depends=[BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors SummarizedExperiment]; }; + GenomicDataCommons = derive2 { name="GenomicDataCommons"; version="1.5.8"; sha256="0gp8izsk2kb2adv8ykmsjzba39lbkw02061f5j82ysvgzmb2gh16"; depends=[dplyr GenomicRanges httr IRanges jsonlite lazyeval magrittr rappdirs readr S4Vectors SummarizedExperiment xml2]; }; + GenomicFeatures = derive2 { name="GenomicFeatures"; version="1.33.6"; sha256="0qq5yh524qxd3qa9i10niqk3aw4ff7b6xfr10041gk1r94l7apyv"; depends=[AnnotationDbi Biobase BiocGenerics biomaRt Biostrings DBI GenomeInfoDb GenomicRanges IRanges RCurl RSQLite rtracklayer S4Vectors XVector]; }; + GenomicFiles = derive2 { name="GenomicFiles"; version="1.17.4"; sha256="160mnxz41wzlqigc9r40pkn5jc0raa84y1yjiyhj1406fv2aaj6n"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; + GenomicInteractions = derive2 { name="GenomicInteractions"; version="1.15.1"; sha256="0jga57bna3fbfrzp9525mzp9c6amy8i6i1j65vf3l7hw75d8q20z"; depends=[Biobase BiocGenerics data_table dplyr GenomeInfoDb GenomicRanges ggplot2 gridExtra Gviz igraph InteractionSet IRanges Rsamtools rtracklayer S4Vectors stringr]; }; + GenomicRanges = derive2 { name="GenomicRanges"; version="1.33.14"; sha256="1vmvmrd65dxhm06r879kqmncs9f4sg5z70fi0409b2078ia4qiyp"; depends=[BiocGenerics GenomeInfoDb IRanges S4Vectors XVector]; }; + GenomicScores = derive2 { name="GenomicScores"; version="1.5.6"; sha256="1fyich4fdz3pfxi95mdz6mmnva9kb7ak5wslzlh6sar62cfk17mx"; depends=[AnnotationHub Biobase BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors XML]; }; + GenomicTuples = derive2 { name="GenomicTuples"; version="1.15.2"; sha256="0hgnz5f5d3wh54icj36v6j06q87w19acnyd696aw78fk590mkvs5"; depends=[BiocGenerics data_table GenomeInfoDb GenomicRanges IRanges Rcpp S4Vectors]; }; Genominator = derive2 { name="Genominator"; version="1.35.0"; sha256="0qvzw9r8hn19gzkj6r94v4787h9lbw8y2s9k7zasn2cdyx55074i"; depends=[BiocGenerics DBI GenomeGraphs IRanges RSQLite]; }; Glimma = derive2 { name="Glimma"; version="1.9.2"; sha256="1njcjla1az23lrg5j93s1hxjrrjsf808plmvdhiai14fdlgzfb8w"; depends=[edgeR jsonlite S4Vectors]; }; - GlobalAncova = derive2 { name="GlobalAncova"; version="3.49.0"; sha256="0y71r0biivxpyrjkl2132ngnz1fl5byi7rbig9g0j5svsmh9kk48"; depends=[annotate AnnotationDbi corpcor globaltest]; }; - GoogleGenomics = derive2 { name="GoogleGenomics"; version="2.3.0"; sha256="10iwh4z3zpv8x239y8i5qpp88ygyg4fiyhsgpyld11fg3d1qkn4h"; depends=[Biobase Biostrings GenomeInfoDb GenomicAlignments GenomicRanges httr IRanges rjson Rsamtools S4Vectors VariantAnnotation]; }; + GlobalAncova = derive2 { name="GlobalAncova"; version="3.99.3"; sha256="1d38kp53qw25g2pdsiz4g38nm5hjr537i6ly7lvabvh5zim7h0bn"; depends=[annotate AnnotationDbi Biobase corpcor dendextend globaltest GSEABase VGAM]; }; + GoogleGenomics = derive2 { name="GoogleGenomics"; version="2.3.2"; sha256="00qf7zadaryylkkizfdaapdppzxkfwdzwkv4qxkvwz1pkvr1yc5r"; depends=[Biobase Biostrings GenomeInfoDb GenomicAlignments GenomicRanges httr IRanges rjson Rsamtools S4Vectors VariantAnnotation]; }; GraphAT = derive2 { name="GraphAT"; version="1.53.0"; sha256="0wsn0nfj4qds2kxm3gxfx8wwyf00l0ifvk660czm7zc6ppfj1sb8"; depends=[graph MCMCpack]; }; GraphAlignment = derive2 { name="GraphAlignment"; version="1.45.0"; sha256="0mdy8g3i4b7wy9zqfbb1zia1h84kv2av4yl6japzz5ymiipjaimy"; depends=[]; }; - GraphPAC = derive2 { name="GraphPAC"; version="1.23.0"; sha256="1wy20xjw6ikdjd66pk654dj5zcaxm2mn8vnwxr6s628x9c70rh0w"; depends=[igraph iPAC RMallow TSP]; }; + GraphPAC = derive2 { name="GraphPAC"; version="1.23.1"; sha256="1xr4ys2ckzyc8w5c3pmywp341viac9xv9hz691lgm61krafyh370"; depends=[igraph iPAC RMallow TSP]; }; GreyListChIP = derive2 { name="GreyListChIP"; version="1.13.0"; sha256="0m9qvb3rw1hr119vq2k5fdbywq8vfgfhxwm6r9nfmxdhdir6178j"; depends=[BSgenome GenomeInfoDb GenomicAlignments GenomicRanges MASS Rsamtools rtracklayer SummarizedExperiment]; }; Guitar = derive2 { name="Guitar"; version="1.19.0"; sha256="0khy7vhr8r56r14kiqz83py227jaji46aqlqs8yhj7kh6cgh59c5"; depends=[GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges Rsamtools rtracklayer]; }; Gviz = derive2 { name="Gviz"; version="1.25.0"; sha256="0c64bn8dqvcwi3jdfx0yg2jc7x1v41h4py7ily9z82ms8lfv7jh8"; depends=[AnnotationDbi Biobase BiocGenerics biomaRt Biostrings biovizBase BSgenome digest GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges lattice latticeExtra matrixStats RColorBrewer Rsamtools rtracklayer S4Vectors XVector]; }; - HDF5Array = derive2 { name="HDF5Array"; version="1.9.4"; sha256="1ld8fm7zvd3kzrqynx3q8vzcbn1k82lim1fnhz449x4gxi6gddpg"; depends=[BiocGenerics DelayedArray IRanges rhdf5 S4Vectors]; }; - HDTD = derive2 { name="HDTD"; version="1.15.0"; sha256="00zrdmpscbycmlli7qvx6vdy7nyckxfazylrx83qaffg9d7a9wc4"; depends=[Rcpp RcppArmadillo]; }; + HDF5Array = derive2 { name="HDF5Array"; version="1.9.19"; sha256="01421q7hz1kmj4s4iwzb01ibq3ssz3sh67smg0ap52d1ykqqx8mx"; depends=[BiocGenerics DelayedArray IRanges rhdf5 S4Vectors]; }; + HDTD = derive2 { name="HDTD"; version="1.15.1"; sha256="08h1wnsacr74ynjwn4aw98lwf9pjf081g1yi4557xb7cfzf4l6pn"; depends=[Rcpp RcppArmadillo]; }; HELP = derive2 { name="HELP"; version="1.39.0"; sha256="1sb43vndrk5qbazxwx3n0lmkb43525vmarj3hbkqplid5bppcddp"; depends=[Biobase]; }; HEM = derive2 { name="HEM"; version="1.53.0"; sha256="090k94d4bfmf1fqbxhlp2vb70x7934xwq8fjmgc2wlrq5d1iqjff"; depends=[Biobase]; }; - HIBAG = derive2 { name="HIBAG"; version="1.17.1"; sha256="1raldjan5w9fvvk0hrwydyb1j6rs3566ks07nhym16f7bzrml85b"; depends=[]; }; + HIBAG = derive2 { name="HIBAG"; version="1.17.2"; sha256="08fdgnrzx113cqk7v6wv7kfj13lhg2j4f86ap4ily1wirbb0q8y2"; depends=[]; }; + HIREewas = derive2 { name="HIREewas"; version="0.99.8"; sha256="1df575f0fld051il5cpz27syvfmm70idvhr2af82r2lqbzz4ik8v"; depends=[gplots quadprog]; }; HMMcopy = derive2 { name="HMMcopy"; version="1.23.0"; sha256="1ciawdh971fwfa60lb1469pqgmw9giyqksqk5zkfbal967pia1ck"; depends=[geneplotter IRanges]; }; + HPAanalyze = derive2 { name="HPAanalyze"; version="0.99.19"; sha256="1s5inkcpsga791ranlf7c3bbdq42s05h4q7ba465lym685gpz18l"; depends=[cowplot dplyr ggplot2 hpar magrittr readr reshape2 tibble tidyr XLConnect xml2]; }; HTSFilter = derive2 { name="HTSFilter"; version="1.21.0"; sha256="1c85v66fax6h00dkny5308mv1vsdinj590x6w4aghd6b4nb16qgr"; depends=[Biobase BiocParallel DESeq DESeq2 edgeR]; }; HTSanalyzeR = derive2 { name="HTSanalyzeR"; version="2.33.0"; sha256="10agvn6dcmzczj5xdpviisnamfs6642xskh7zgh14c0p13gv76xs"; depends=[AnnotationDbi biomaRt BioNet cellHTS2 graph GSEABase igraph RankProd]; }; HTSeqGenie = derive2 { name="HTSeqGenie"; version="4.11.0"; sha256="0k6ql5pkn2yjvmf13g4lzrqb0jcnp0rqsvakkqmirpj2b40wynj1"; depends=[BiocGenerics BiocParallel Biostrings Cairo chipseq GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gmapR hwriter IRanges Rsamtools rtracklayer S4Vectors ShortRead SummarizedExperiment VariantAnnotation VariantTools]; }; HTqPCR = derive2 { name="HTqPCR"; version="1.35.0"; sha256="09wc412znd92fi3lm909mrz3xd9cjiwiw6b0ncki1yc186faizr4"; depends=[affy Biobase gplots limma RColorBrewer]; }; - Harman = derive2 { name="Harman"; version="1.9.0"; sha256="1kcv48g1fwh36xdw8cx0v28n4dl9s4414vwa0alnwdy2j0b9n8qk"; depends=[Rcpp]; }; + Harman = derive2 { name="Harman"; version="1.9.1"; sha256="1nk5szn0zgw1301m6jn9kr6qp3z1766a2nzp8sp9x6fnigc7zmsi"; depends=[Rcpp]; }; Harshlight = derive2 { name="Harshlight"; version="1.53.0"; sha256="0nlghc13lmhvsy06spvzhc7cihpzayli1iyid7h7ifa8zik6dz72"; depends=[affy altcdfenvs Biobase]; }; Heatplus = derive2 { name="Heatplus"; version="2.27.0"; sha256="1fyz7272w2ixisvg0gsv30svppd6xd47r79xg1r1y2qy62q04bca"; depends=[RColorBrewer]; }; HelloRanges = derive2 { name="HelloRanges"; version="1.7.0"; sha256="1h88zrvx3h4s7jsadyf3f3x6p0hbkn2f6smnkdmm7fva4lhlg7hl"; depends=[BiocGenerics Biostrings BSgenome docopt GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; - HiCcompare = derive2 { name="HiCcompare"; version="1.3.0"; sha256="1kj8aqq4ddlsh3xnrzbj3hid67ai7p7d4hk2avxscicyrrskkq8w"; depends=[BiocParallel data_table dplyr GenomicRanges ggplot2 gridExtra gtools InteractionSet IRanges KernSmooth mgcv pheatmap QDNAseq S4Vectors]; }; + HiCBricks = derive2 { name="HiCBricks"; version="0.99.16"; sha256="11rafxnh91mgl73xvqw83q9fhvm1gy6ma3c6r1xrwbjkwib5iam5"; depends=[BiocFileCache curl data_table digest GenomeInfoDb GenomicRanges ggplot2 IRanges R6 rappdirs RColorBrewer reshape2 rhdf5 S4Vectors scales stringr viridis]; }; + HiCcompare = derive2 { name="HiCcompare"; version="1.3.2"; sha256="0mqslkc98yz8hhil6fapxwzs4qy5v784knnakkm01rz0sjpb8jbp"; depends=[BiocParallel data_table dplyr GenomicRanges ggplot2 gridExtra gtools InteractionSet IRanges KernSmooth mgcv pheatmap QDNAseq S4Vectors]; }; HiTC = derive2 { name="HiTC"; version="1.25.0"; sha256="1mryn42bsvswb0gf027aw4qbrk57w8859zyvicymdi3d78pw8rmv"; depends=[Biostrings GenomeInfoDb GenomicRanges IRanges Matrix RColorBrewer rtracklayer]; }; - HilbertCurve = derive2 { name="HilbertCurve"; version="1.11.1"; sha256="0mv3ijx5506wng7zs556k2ljb11si73f9109hg3i8jl5qcn5zdn9"; depends=[circlize GenomicRanges HilbertVis IRanges png]; }; - HilbertVis = derive2 { name="HilbertVis"; version="1.39.0"; sha256="068jm0ls9ix06w4argkaldfrsx6fynywh0776ygn0iaxmcjm2fpb"; depends=[lattice]; }; + HilbertCurve = derive2 { name="HilbertCurve"; version="1.11.2"; sha256="0kxl5ihmgvsafiwi576kgyz1g60a25w6r8m4g9w6pzdwcxzp871d"; depends=[circlize GenomicRanges HilbertVis IRanges png]; }; + HilbertVis = derive2 { name="HilbertVis"; version="1.39.2"; sha256="1qmnv0m4ywcjwqljvs9kbif63cyr842lzsj2flh5f3bf7pha1s7f"; depends=[lattice]; }; HilbertVisGUI = derive2 { name="HilbertVisGUI"; version="1.39.0"; sha256="1jq70si8q74jg22zg4gx4c6nbi8zszgiqrbc6cavn4v578fam3z1"; depends=[HilbertVis]; }; HybridMTest = derive2 { name="HybridMTest"; version="1.25.0"; sha256="0g667li0fhf085ha9210xwj3r0sy7ks9lj5v8lpiyz48yi8w2nfn"; depends=[Biobase fdrtool MASS survival]; }; - IHW = derive2 { name="IHW"; version="1.9.1"; sha256="0h7gpmcnlahclhplfmi89s3ai3syg1cdvv2mc6nrx9kq7dckl3xv"; depends=[BiocGenerics fdrtool lpsymphony slam]; }; - IMAS = derive2 { name="IMAS"; version="1.5.0"; sha256="0lwn1kp5z488yryx8zzi0b5kdm5kzycdbpnn6lbx6ixjkhs26fkl"; depends=[AnnotationDbi BiocGenerics BiocParallel doParallel foreach GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggfortify ggplot2 gridExtra IRanges IVAS lattice lme4 Matrix Rsamtools S4Vectors survival]; }; + IHW = derive2 { name="IHW"; version="1.9.2"; sha256="10lwbvr33xsxxs0sy8skyym81gw4328xxwdkhhmz0cyqgy23k3jr"; depends=[BiocGenerics fdrtool lpsymphony slam]; }; + IMAS = derive2 { name="IMAS"; version="1.5.1"; sha256="0p5rhnvkzms8bvwc5lhkgi8hyqsm82mdwmsk245xxrrjdn6ir6ff"; depends=[AnnotationDbi BiocGenerics BiocParallel doParallel foreach GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggfortify ggplot2 gridExtra IRanges IVAS lattice lme4 Matrix Rsamtools S4Vectors survival]; }; IMMAN = derive2 { name="IMMAN"; version="1.1.0"; sha256="0sgyiq7wif4imq81qqgwhbrx54dr26gb22j79mzzjyprv8yxgdkj"; depends=[BiocFileCache Biostrings igraph seqinr STRINGdb]; }; IMPCdata = derive2 { name="IMPCdata"; version="1.17.0"; sha256="0r5j70i1mdrpxjznmb6i561076n1vk1h371kvlxkb8y343ajz7sq"; depends=[rjson]; }; + INDEED = derive2 { name="INDEED"; version="0.99.17"; sha256="0v9vx1zb3r6861h7zb2bg15a541q04v8k2pf3j0i8vd5az32knlv"; depends=[devtools glasso]; }; INPower = derive2 { name="INPower"; version="1.17.0"; sha256="1ilqffcbaxwk54m297f4znhbphjjipjfd82554z4mwdrkf0cz2lw"; depends=[mvtnorm]; }; INSPEcT = derive2 { name="INSPEcT"; version="1.11.0"; sha256="1na92547w6qn6dkhy3zp3gj1g3vr2y3kx6j78hnq0ch9l8k9s2c7"; depends=[Biobase BiocGenerics BiocParallel deSolve GenomicAlignments GenomicFeatures GenomicRanges IRanges preprocessCore pROC rootSolve Rsamtools S4Vectors]; }; IONiseR = derive2 { name="IONiseR"; version="2.5.0"; sha256="0gn75w73ahyk3vm70vq003rlg1wsazfy7qygdp4dnq0g9qpz8dyy"; depends=[BiocGenerics BiocParallel Biostrings bit64 dplyr ggplot2 magrittr rhdf5 ShortRead stringr tibble tidyr XVector]; }; - IPO = derive2 { name="IPO"; version="1.7.0"; sha256="096a1c2ybmki12kqj2y1njpjbsia4qqd3rmj851cmks9h33mxk8m"; depends=[BiocParallel CAMERA rsm xcms]; }; + IPO = derive2 { name="IPO"; version="1.7.1"; sha256="0hgflvvy840y822bk3bm2sj8yqc8q3nipxxqa5j6if17w10icvvn"; depends=[BiocParallel CAMERA rsm xcms]; }; IPPD = derive2 { name="IPPD"; version="1.29.0"; sha256="1gwsq17ipba4q7jby4hj7bwrpbfzach5spsvnb4571x7nr6yx7qg"; depends=[bitops digest MASS Matrix XML]; }; - IRanges = derive2 { name="IRanges"; version="2.15.14"; sha256="1w12vvyfi53hr45xhl1vzsygig9vdzlxkkyjsylbwc9ny595pam7"; depends=[BiocGenerics S4Vectors]; }; + IRanges = derive2 { name="IRanges"; version="2.15.19"; sha256="096d7hil68zhy2l2vhd0q5prkrzybbwl28fa00k7rbail5vh8r8v"; depends=[BiocGenerics S4Vectors]; }; ISoLDE = derive2 { name="ISoLDE"; version="1.9.0"; sha256="111p1wxyn3kqx6gdnrl55jwnlnqfa98wljkiw4wqqf2cdrykb7pr"; depends=[]; }; ITALICS = derive2 { name="ITALICS"; version="2.41.0"; sha256="1lj5n1xgq49xn8yv8q6lfg01hw8l4yc5ffc98falzhlcvqxhkvzc"; depends=[affxparser DBI GLAD ITALICSData oligo oligoClasses pd_mapping50k_xba240]; }; IVAS = derive2 { name="IVAS"; version="2.1.0"; sha256="0ipw8834ag1j2qg3i5nnfcncrjpzhd2m5hzhn1bjpvhd357r1gn1"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel doParallel foreach GenomeInfoDb GenomicFeatures GenomicRanges ggfortify ggplot2 IRanges lme4 Matrix S4Vectors]; }; - IWTomics = derive2 { name="IWTomics"; version="1.5.0"; sha256="0v5q1ywvgvcwlfh7a9krh06b1ad4i5kpnm67az81znliz3s2m60y"; depends=[fda GenomicRanges gtable IRanges KernSmooth S4Vectors]; }; + IWTomics = derive2 { name="IWTomics"; version="1.5.2"; sha256="1rmlr66mgg5nfm2b50g0a83ahs0xkkji1is930vjprrfcn6clmn2"; depends=[fda GenomicRanges gtable IRanges KernSmooth S4Vectors]; }; Icens = derive2 { name="Icens"; version="1.53.0"; sha256="16cxm1i6ir74l2x80wsp544ykffy91m4fv8v283nki0hx434pkn7"; depends=[survival]; }; IdMappingAnalysis = derive2 { name="IdMappingAnalysis"; version="1.25.0"; sha256="025zqjc36whlraq3hjz0p5dzj5m19y50clrlgrimrz4ag5bfmf2q"; depends=[Biobase boot mclust R_oo rChoiceDialogs RColorBrewer]; }; IdMappingRetrieval = derive2 { name="IdMappingRetrieval"; version="1.29.0"; sha256="0fn8xp7ybpg0z3bnk9sab53y7kflzys0r1cvikyp5n8pfkrr95g2"; depends=[AffyCompatible biomaRt ENVISIONQuery R_methodsS3 R_oo rChoiceDialogs RCurl XML]; }; IdeoViz = derive2 { name="IdeoViz"; version="1.17.0"; sha256="0yr7yisb9hr2jsdlv7m59p9kiaxssv6rj8x4rqzraaipd7cn0gcy"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges RColorBrewer rtracklayer]; }; Imetagene = derive2 { name="Imetagene"; version="1.11.0"; sha256="1zswp6h2c9nn4p73knp4wsnbqv77gp86njzpxjvgqjmvfj57y8nc"; depends=[d3heatmap ggplot2 metagene shiny shinyBS shinyFiles shinythemes]; }; - ImmuneSpaceR = derive2 { name="ImmuneSpaceR"; version="1.9.0"; sha256="00v2dfzcxwffpss873j1i74vl1qgimdqamyx4gj4cqjv76qcdrqc"; depends=[Biobase data_table ggplot2 gplots gtools heatmaply httr pheatmap plotly preprocessCore R6 reshape2 rjson Rlabkey rmarkdown scales]; }; + ImmuneSpaceR = derive2 { name="ImmuneSpaceR"; version="1.9.3"; sha256="1dlb8dklkizcbmy7kc8mgr8d60k59j1zwgdfs9lf2zlxmzqz44zv"; depends=[Biobase curl data_table ggplot2 gplots gtools heatmaply httr pheatmap plotly preprocessCore R6 reshape2 rjson Rlabkey rmarkdown scales]; }; ImpulseDE = derive2 { name="ImpulseDE"; version="1.7.0"; sha256="0g34jfff5lsvzak21fdi2fdx9a2v0n1f2cmjsk62jkjzr9jpyp2f"; depends=[amap boot]; }; ImpulseDE2 = derive2 { name="ImpulseDE2"; version="1.5.0"; sha256="1f9nymih6fwq6p53x9f7zjblkdrrj0f89w1lv9f8bdz1y4icn1y4"; depends=[Biobase BiocParallel circlize ComplexHeatmap cowplot DESeq2 ggplot2 knitr Matrix S4Vectors SummarizedExperiment]; }; - InPAS = derive2 { name="InPAS"; version="1.13.0"; sha256="0hk6lr9sk4yvgj9pw0w48936lmgz478k5jfbh1jmybixgx9cnl7k"; depends=[AnnotationDbi Biobase BiocParallel BSgenome cleanUpdTSeq depmixS4 GenomeInfoDb GenomicFeatures GenomicRanges Gviz IRanges limma preprocessCore S4Vectors seqinr]; }; + InPAS = derive2 { name="InPAS"; version="1.13.1"; sha256="0wj459bay4ywq9aymdp2snw6fzhbrdfg80ya96z8kgprxvp2r21z"; depends=[AnnotationDbi Biobase BiocParallel BSgenome cleanUpdTSeq depmixS4 GenomeInfoDb GenomicFeatures GenomicRanges Gviz IRanges limma preprocessCore S4Vectors seqinr]; }; InTAD = derive2 { name="InTAD"; version="1.1.0"; sha256="0pm720gl7apzbcqxd53gj4ynkglv4bb0xrzibcwbpwgsmi75g55c"; depends=[Biobase BiocGenerics GenomicRanges ggplot2 ggpubr IRanges mclust MultiAssayExperiment qvalue rtracklayer S4Vectors SummarizedExperiment]; }; - IntEREst = derive2 { name="IntEREst"; version="1.5.1"; sha256="1drlpx96rfdr94i3aqvwb839ivwb6y4kg1qqip6hh33shrh7hzf0"; depends=[BiocGenerics BiocParallel Biostrings DBI DESeq2 DEXSeq edgeR GenomicAlignments GenomicFeatures GenomicRanges IRanges RMySQL Rsamtools S4Vectors seqinr seqLogo SummarizedExperiment]; }; - InterMineR = derive2 { name="InterMineR"; version="1.3.0"; sha256="0rsf9ssnzcsfynk3ifsn2g5hk8g8nlkli0x7b7p5x60w8pvawss4"; depends=[Biostrings GenomicRanges httr igraph IRanges RCurl RJSONIO S4Vectors sqldf SummarizedExperiment XML xml2]; }; - InteractionSet = derive2 { name="InteractionSet"; version="1.9.1"; sha256="0zdsdqmym0s09fp724xfa53bfy5isnj4gpxwaircl6js44rdp0f2"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges Matrix Rcpp S4Vectors SummarizedExperiment]; }; - IntramiRExploreR = derive2 { name="IntramiRExploreR"; version="1.3.0"; sha256="015mjy0fcch4z3nsy5jvyl6jcc6zigvfh4s35nm3yjw2plg06jm4"; depends=[igraph knitr]; }; + IntEREst = derive2 { name="IntEREst"; version="1.5.2"; sha256="0vm9bp8cp8igmxcsd8n8s9y5nmcm98fsj1albcn8p87iq2jgkvix"; depends=[BiocGenerics BiocParallel Biostrings DBI DESeq2 DEXSeq edgeR GenomicAlignments GenomicFeatures GenomicRanges IRanges RMySQL Rsamtools S4Vectors seqinr seqLogo SummarizedExperiment]; }; + InterMineR = derive2 { name="InterMineR"; version="1.3.3"; sha256="0x8nlvffa4i4rnk7ib11a29f5cr4vmvc4hspm0gir186zqcg7dw8"; depends=[Biostrings GenomicRanges httr igraph IRanges RCurl RJSONIO S4Vectors sqldf SummarizedExperiment XML xml2]; }; + InteractionSet = derive2 { name="InteractionSet"; version="1.9.5"; sha256="1dmk08y0416ffljinh16qvvnm7hifdbbfzpg59r9l0lqwgpkligk"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges Matrix Rcpp S4Vectors SummarizedExperiment]; }; + IntramiRExploreR = derive2 { name="IntramiRExploreR"; version="1.3.0"; sha256="015mjy0fcch4z3nsy5jvyl6jcc6zigvfh4s35nm3yjw2plg06jm4"; depends=[FGNet igraph knitr]; }; + IsoCorrectoR = derive2 { name="IsoCorrectoR"; version="0.99.3"; sha256="11py0fpn0lz62my2zfs1p5aahjjda259gnfwsa47jid6dx9lghw4"; depends=[dplyr magrittr pracma quadprog readr readxl stringr tibble WriteXLS]; }; IsoGeneGUI = derive2 { name="IsoGeneGUI"; version="2.17.0"; sha256="0fx9zkvg8471kcyda3hvp7zjv6d1z1pr2sq5882xn1amhcjpwws1"; depends=[Biobase ff geneplotter goric Iso IsoGene jpeg multtest ORCME ORIClust orQA RColorBrewer Rcpp relimp tkrplot xlsx]; }; - IsoformSwitchAnalyzeR = derive2 { name="IsoformSwitchAnalyzeR"; version="1.3.1"; sha256="19pzz6airm4jghr699g2sx8d0m8sxplmgyy09508npwxq5kkw4rw"; depends=[Biostrings BSgenome cummeRbund DBI DRIMSeq edgeR futile_logger GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges plyr RColorBrewer reshape2 rtracklayer tximport VennDiagram]; }; - JunctionSeq = derive2 { name="JunctionSeq"; version="1.11.0"; sha256="1pq098zb6ynsrxmvppjvh4ws642sry12hz1rsc53ph5n375blxga"; depends=[Biobase BiocGenerics BiocParallel DESeq2 genefilter geneplotter GenomicRanges Hmisc IRanges locfit plotrix Rcpp RcppArmadillo S4Vectors statmod stringr SummarizedExperiment]; }; + IsoformSwitchAnalyzeR = derive2 { name="IsoformSwitchAnalyzeR"; version="1.3.10"; sha256="1r1y2fzhiv1r86jrd1miij164lq5pa6425shcd8jfza9igpnlmz6"; depends=[Biostrings BSgenome DBI DEXSeq dplyr DRIMSeq edgeR futile_logger GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges limma magrittr plyr RColorBrewer readr reshape2 rtracklayer stringr tximport VennDiagram]; }; + JunctionSeq = derive2 { name="JunctionSeq"; version="1.11.2"; sha256="1hhfam0yfrwyjvkzsn5pnx2564zggzw2y9163g4sxjxr5a0y5ggb"; depends=[Biobase BiocGenerics BiocParallel DESeq2 genefilter geneplotter GenomicRanges Hmisc IRanges locfit plotrix Rcpp RcppArmadillo S4Vectors statmod stringr SummarizedExperiment]; }; KCsmart = derive2 { name="KCsmart"; version="2.39.0"; sha256="1y5lrcl4inkdmbr9bma02j7g4r0my49jvc434mzgvjmv6zfilm4k"; depends=[BiocGenerics KernSmooth multtest siggenes]; }; - KEGGREST = derive2 { name="KEGGREST"; version="1.21.1"; sha256="1kk89li0nzp0g8p3v69c8b8ijqia9rz45139f56kl7vfvrr8l7yd"; depends=[Biostrings httr png]; }; + KEGGREST = derive2 { name="KEGGREST"; version="1.21.2"; sha256="1xbs8c2p4y0igwazh0iy7g0bsjqvrp76gdn3bfgvyig75x7fkiv0"; depends=[Biostrings httr png]; }; KEGGgraph = derive2 { name="KEGGgraph"; version="1.41.0"; sha256="0sd2m80q2igal5qh03qcdjpcyi6rxk8w3mxgd9rjars6ykcj0g84"; depends=[graph XML]; }; - KEGGprofile = derive2 { name="KEGGprofile"; version="1.23.0"; sha256="0y1whzp0q1hlrcg9qhba6fh5iimnqp6phvd7kl8phkyhi5zzsv9a"; depends=[AnnotationDbi biomaRt KEGG_db KEGGREST png RCurl TeachingDemos XML]; }; + KEGGlincs = derive2 { name="KEGGlincs"; version="1.7.3"; sha256="0mrzrcg0327hgp11i704qiyc53pplzmjdwbjxx12pqwaxrrkfijf"; depends=[AnnotationDbi gtools hgu133a_db httr igraph KEGGgraph KEGGREST KOdata org_Hs_eg_db plyr RJSONIO XML]; }; + KEGGprofile = derive2 { name="KEGGprofile"; version="1.23.2"; sha256="02yqlbav775sx6cipc93rnz2qrhay93k4vrgs9h4gcz949rchhwh"; depends=[AnnotationDbi biomaRt KEGG_db KEGGREST png RCurl TeachingDemos XML]; }; + KinSwingR = derive2 { name="KinSwingR"; version="0.99.10"; sha256="1mj7bdqlg7rsxpha7x1wcjkkavcmnb9bdz92xigksip5qsdcs2r1"; depends=[BiocParallel data_table sqldf]; }; LBE = derive2 { name="LBE"; version="1.49.0"; sha256="07r55w9f7a5fdp183rjx5f15jzkw73q6r7ra7drk887xylzmxvd0"; depends=[]; }; LEA = derive2 { name="LEA"; version="2.3.0"; sha256="1k7zxl6aa09kr2gmh6lhg1hdb332fqggdi8hk4gbjcgsa533sqcc"; depends=[]; }; LINC = derive2 { name="LINC"; version="1.9.0"; sha256="1295829apimwfiyhxzyl61wlabd7j18zdycrrai2f3d42005pfjw"; depends=[ape Biobase clusterProfiler DOSE ggplot2 ggtree gridExtra org_Hs_eg_db png Rcpp ReactomePA reshape2 sva]; }; LMGene = derive2 { name="LMGene"; version="2.37.0"; sha256="1pkgkn12bgmamfcbdi5c352v92q31rzwcq69kh00z7wb07flcmf2"; depends=[affy Biobase multtest survival]; }; - LOBSTAHS = derive2 { name="LOBSTAHS"; version="1.7.1"; sha256="16agj2lk871hqnwjrwg59qxsblr7gb2pd5y5h734c2san34y09r3"; depends=[CAMERA xcms]; }; - LOLA = derive2 { name="LOLA"; version="1.11.0"; sha256="1pgxwcbd0sdb9npq6sjvbjjlqq13750795m9ycjz3mg2989y4rn5"; depends=[BiocGenerics data_table GenomicRanges IRanges reshape2 S4Vectors]; }; + LOBSTAHS = derive2 { name="LOBSTAHS"; version="1.7.2"; sha256="1j14x79xmzxc64jr3k4mxhfsv20pwvzr253jnchywfagky8ad3a5"; depends=[CAMERA xcms]; }; + LOLA = derive2 { name="LOLA"; version="1.11.1"; sha256="1dk4b0cc1kgqd0b171pigvk445hl82bsx8izxwlg86zgrgmsb0sx"; depends=[BiocGenerics data_table GenomicRanges IRanges reshape2 S4Vectors]; }; LPE = derive2 { name="LPE"; version="1.55.0"; sha256="08pghdnq4l4zj21q3jz77x2hryjps1jk0rpdlv9kr207f535ww9l"; depends=[]; }; LPEadj = derive2 { name="LPEadj"; version="1.41.0"; sha256="0sjhx44m1rfkhpq87996wc7n8axz2k8c4ni818rx78cqpha5ybjl"; depends=[LPE]; }; + LRBaseDbi = derive2 { name="LRBaseDbi"; version="0.99.22"; sha256="0yvsj66hdxmw9nqysb0a7jih5fi8jp1fdaccrkjs7mkp3zz6hzpp"; depends=[AnnotationDbi Biobase DBI RSQLite]; }; LVSmiRNA = derive2 { name="LVSmiRNA"; version="1.31.0"; sha256="0wgjvy0r0p254kr686nnvjdwbqhbq06q1izy2idh9aaa043swaqn"; depends=[affy Biobase BiocGenerics limma MASS quantreg SparseM vsn zlibbioc]; }; - LedPred = derive2 { name="LedPred"; version="1.15.0"; sha256="1jbwxs9hcwqcm1dpn24jkq0xi8jyja9mq347frpn8vc1m08w4bjx"; depends=[akima e1071 ggplot2 irr jsonlite plot3D plyr RCurl ROCR testthat]; }; + LedPred = derive2 { name="LedPred"; version="1.15.1"; sha256="0h2rw9mx67ilcm61z1m2ddwpvq53rzvn1kbsgzqdszx0r63gfkxm"; depends=[akima e1071 ggplot2 irr jsonlite plot3D plyr RCurl ROCR testthat]; }; LineagePulse = derive2 { name="LineagePulse"; version="1.1.0"; sha256="00y0xcw89c1kdmcdj4pw620szrhxy2sykb7iblfbxz04cbj7vygs"; depends=[BiocParallel circlize ComplexHeatmap ggplot2 gplots knitr Matrix RColorBrewer SingleCellExperiment SummarizedExperiment]; }; Linnorm = derive2 { name="Linnorm"; version="2.5.0"; sha256="013i53zmjgrkb4icgzp9mdmn7wqfm8r24izm6vifigczqphm0g0i"; depends=[amap apcluster ellipse fastcluster fpc ggdendro ggplot2 gmodels igraph limma MASS mclust Rcpp RcppArmadillo Rtsne statmod vegan zoo]; }; LiquidAssociation = derive2 { name="LiquidAssociation"; version="1.35.0"; sha256="0ggrhgdlw44k0q5nddn60m91225xx4c58ydjgd98b4rz4a0l9qjy"; depends=[Biobase geepack org_Sc_sgd_db yeastCC]; }; - Logolas = derive2 { name="Logolas"; version="1.5.0"; sha256="0h6pq0mp935ygm8pcnk4g9wxg9hcqnbssw6ar1kw59kcama062fs"; depends=[Biostrings ggplot2 gridBase LaplacesDemon SQUAREM]; }; + Logolas = derive2 { name="Logolas"; version="1.5.1"; sha256="14db1h5caklijdn0g4hk89n6h82fd932j9sxfzw2smhkg3k71xhw"; depends=[Biostrings ggplot2 gridBase LaplacesDemon SQUAREM]; }; LowMACA = derive2 { name="LowMACA"; version="1.11.2"; sha256="1ir6vfjiwjhi6hj6pzksh2wfrcsmhkd80zwc135md0gmxr5bhhw8"; depends=[BiocParallel Biostrings cgdsr data_table httr LowMACAAnnotation motifStack RColorBrewer reshape2 stringr]; }; - LymphoSeq = derive2 { name="LymphoSeq"; version="1.9.0"; sha256="0s0hwgbxdmkpdp6mnvd181idg0n3z87wf4w0arjih1205n1hqsyw"; depends=[Biostrings circlize data_table dplyr ggplot2 ggtree ineq LymphoSeqDB msa phangorn plyr RColorBrewer reshape stringdist UpSetR VennDiagram]; }; - M3C = derive2 { name="M3C"; version="1.3.3"; sha256="1h9f5syg4r435w5p5azgmyfmfaycqx0mmbs8jgz2hp3m04f8a967"; depends=[cluster dendextend doParallel doSNOW foreach ggplot2 Matrix matrixcalc NMF RColorBrewer Rtsne sigclust]; }; + LymphoSeq = derive2 { name="LymphoSeq"; version="1.9.2"; sha256="1q0xs2d7lgg0vz2ca84kv1igaf48y42g94xxdxmi1nmpz901pr8a"; depends=[Biostrings circlize data_table dplyr ggplot2 ggtree ineq LymphoSeqDB msa phangorn plyr RColorBrewer reshape stringdist UpSetR VennDiagram]; }; + M3C = derive2 { name="M3C"; version="1.3.991"; sha256="0wzg8rsfc1xgfdyl3l1y87cqvicpmj30ng45wfwp0d4vkd1llvqp"; depends=[cluster dendextend doParallel doSNOW foreach ggplot2 Matrix matrixcalc NMF RColorBrewer Rtsne sigclust survival]; }; M3D = derive2 { name="M3D"; version="1.15.0"; sha256="1fdfahbdfx3csn27q61djp27a2w6jr9yl9hw6rakjnj7mk5s1xrj"; depends=[BiocGenerics BiSeq GenomicRanges IRanges Rcpp S4Vectors SummarizedExperiment]; }; - M3Drop = derive2 { name="M3Drop"; version="1.7.0"; sha256="0w4vwlbaz68if7vanhr79nqg84cq9r60drrawc9c5c6gfcfzzjmz"; depends=[bbmle gplots numDeriv RColorBrewer statmod]; }; - MADSEQ = derive2 { name="MADSEQ"; version="1.7.0"; sha256="00x1nbvf375nik8v12hwpbnn84l70j5jycv8kp37fn18909100lh"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 coda GenomeInfoDb GenomicAlignments GenomicRanges IRanges preprocessCore rjags Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation vcfR VGAM zlibbioc]; }; - MAGeCKFlute = derive2 { name="MAGeCKFlute"; version="1.1.2"; sha256="03inn8i0pragrph3nia1zvkjd5kr3iz5ggj2i1fm6ir9259c7n01"; depends=[Category clusterProfiler data_table DOSE ggExtra ggplot2 ggrepel ggsci GOstats gridExtra pathological pathview pheatmap png RColorBrewer reshape sva]; }; + M3Drop = derive2 { name="M3Drop"; version="1.7.1"; sha256="1gscdkrnyk2qghkpidwj6abbxc53ivyxyc43297yja6hj73nz8mw"; depends=[bbmle gplots numDeriv RColorBrewer statmod]; }; + MACPET = derive2 { name="MACPET"; version="1.1.4"; sha256="0g9adhig02s6r45ax7335i2zsq8r2319111c0ijp6c6y5z52rcrp"; depends=[BH bigmemory BiocParallel Biostrings futile_logger GenomeInfoDb GenomicAlignments GenomicRanges GEOquery gtools InteractionSet intervals IRanges knitr plyr rbamtools Rbowtie Rcpp Rsamtools rtracklayer S4Vectors ShortRead]; }; + MADSEQ = derive2 { name="MADSEQ"; version="1.7.1"; sha256="1x8cfif8var04bdfgdws8zql33a67lf7r0kkalansy5w64wkjm8n"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 coda GenomeInfoDb GenomicAlignments GenomicRanges IRanges preprocessCore rjags Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation vcfR VGAM zlibbioc]; }; + MAGeCKFlute = derive2 { name="MAGeCKFlute"; version="1.1.9"; sha256="1bx9nawmjf2bsnk8iilplph90hdipyqf8mw24cbaaivajnsk6cz0"; depends=[biomaRt clusterProfiler data_table DOSE ggExtra ggplot2 ggrepel ggsci gridExtra pathview pheatmap png RColorBrewer sva]; }; MAIT = derive2 { name="MAIT"; version="1.15.0"; sha256="0z1wl9hxqcfy7nlwqccz244kljdjra58drlhjfvc38kiy4q7nsyg"; depends=[agricolae CAMERA caret class e1071 gplots MASS pls plsgenomics Rcpp xcms]; }; MANOR = derive2 { name="MANOR"; version="1.53.2"; sha256="1ss77yxivvgv2nswdp5qbbjc21ghrnwvj3w33xj4zv79bdb92qga"; depends=[GLAD]; }; MAST = derive2 { name="MAST"; version="1.7.2"; sha256="07v6gjlh645w60c5fq206lmm2qpld1qqirdszrnrz00zrxzrnpz0"; depends=[abind Biobase BiocGenerics data_table ggplot2 plyr reshape2 S4Vectors SingleCellExperiment stringr SummarizedExperiment]; }; MBASED = derive2 { name="MBASED"; version="1.15.0"; sha256="19zn2xmarpiszs3jfmmlgc5nflc2gafbby3x68l38sich2jn1kix"; depends=[BiocGenerics BiocParallel GenomicRanges RUnit SummarizedExperiment]; }; MBAmethyl = derive2 { name="MBAmethyl"; version="1.15.0"; sha256="19lgv7lcy5qc6xbsngqvfxbaqcyk3rz907983ngqa9magr7xy2r1"; depends=[]; }; MBCB = derive2 { name="MBCB"; version="1.35.0"; sha256="0cmmyj0c13b47apdk04qqqfg35rywh5fa0d2inhi31lfvbfd8bcx"; depends=[preprocessCore tcltk2]; }; - MBttest = derive2 { name="MBttest"; version="1.9.1"; sha256="1m99zma2zg070sr759y8gkmm1qwnswqapbhl175xf8kxma1gh4cb"; depends=[gplots gtools]; }; + MBttest = derive2 { name="MBttest"; version="1.9.3"; sha256="1g443ynnk46blficdzygnksirfnwwgggl6d2j0jw0qfvkdsks2bz"; depends=[gplots gtools]; }; MCRestimate = derive2 { name="MCRestimate"; version="2.37.0"; sha256="1b1cp4aan1wnzspihjm2snp16qjd3flr3ixx19mvsqzy5p38pf69"; depends=[Biobase e1071 golubEsets pamr randomForest RColorBrewer]; }; MCbiclust = derive2 { name="MCbiclust"; version="1.5.0"; sha256="1zkxh6gax7rnp6n5dd6kwcljwds33fv5ps4crn41hzndllpbbc93"; depends=[AnnotationDbi BiocParallel cluster GGally ggplot2 GO_db org_Hs_eg_db scales WGCNA]; }; MDTS = derive2 { name="MDTS"; version="1.1.2"; sha256="0q3v06za1wdkrzp711gs7awpk4dvrxj0xy6m5lzjyjz5qdd2nym5"; depends=[Biostrings DNAcopy GenomicAlignments GenomicRanges IRanges Rsamtools stringr]; }; - MEAL = derive2 { name="MEAL"; version="1.11.3"; sha256="04s5gqmn2gd399ba7gj9968d5ryisi6hl7n75mrgns5zq7mb3q7s"; depends=[Biobase BiocGenerics DMRcate GenomicRanges ggplot2 Gviz IRanges isva limma matrixStats minfi missMethyl permute S4Vectors SmartSVA SummarizedExperiment vegan]; }; - MEDIPS = derive2 { name="MEDIPS"; version="1.33.0"; sha256="0c37ns7z4wgir91lhz36035nvp1vc886fardjn2p74bz5w90w16x"; depends=[biomaRt Biostrings BSgenome DNAcopy edgeR GenomicRanges gtools IRanges preprocessCore Rsamtools rtracklayer]; }; + MEAL = derive2 { name="MEAL"; version="1.11.7"; sha256="11l3rbfwnh8yrbi33ii0mcmi63wgmhdwyffx8790gm3dj99l1626"; depends=[Biobase BiocGenerics DMRcate GenomicRanges ggplot2 Gviz IRanges isva limma matrixStats minfi missMethyl MultiDataSet permute S4Vectors SmartSVA SummarizedExperiment vegan]; }; + MEDIPS = derive2 { name="MEDIPS"; version="1.33.3"; sha256="0a2jypw2k9kpdh86gvgchvqlww72gb55aw9vhz67dkd7mfwnsqyc"; depends=[biomaRt Biostrings BSgenome DNAcopy edgeR GenomicRanges gtools IRanges preprocessCore Rsamtools rtracklayer]; }; MEDME = derive2 { name="MEDME"; version="1.41.0"; sha256="1l0i3vz1zp9lmvvfn5h6baf9kzvdyb9m1qffwlg3dvzdzdqadx0l"; depends=[Biostrings drc MASS]; }; - MEIGOR = derive2 { name="MEIGOR"; version="1.15.0"; sha256="0ch31d8g993ikz7dklzfh9mfn1cv8wv7k3nihdspqvbm37m8c0v1"; depends=[CNORode deSolve Rsolnp snowfall]; }; - MGFM = derive2 { name="MGFM"; version="1.15.0"; sha256="08qgxz6aglxgzrbmxmay1xg402vw0a4yp86ifb5p0bwaniiv6k72"; depends=[annotate AnnotationDbi]; }; + MEIGOR = derive2 { name="MEIGOR"; version="1.15.1"; sha256="1vfklcm9yppy3rr2l5ddnp20r368hsr08vy26agr5jqharw7qik9"; depends=[CNORode deSolve Rsolnp snowfall]; }; + MGFM = derive2 { name="MGFM"; version="1.15.1"; sha256="1pd7c9d66c4b1bz6l24mhrwxwdivl47kc57c7mp79z1h9hf66ipf"; depends=[annotate AnnotationDbi]; }; MGFR = derive2 { name="MGFR"; version="1.7.0"; sha256="11vw9yyv6j2pjj4cmlw0f3blxz4iwx3p9r0xpzis5zs12x7pn17f"; depends=[annotate biomaRt]; }; - MIGSA = derive2 { name="MIGSA"; version="1.5.0"; sha256="1n4gh139cp05ahqjd3hyj2pzj9p0pyqhbwhsyg208mlm1arkdyxg"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel data_table edgeR futile_logger ggdendro ggplot2 GO_db GOstats graph GSEABase ismev limma matrixStats org_Hs_eg_db RBGL reshape2 Rgraphviz RJSONIO vegan]; }; + MIGSA = derive2 { name="MIGSA"; version="1.5.2"; sha256="02yqj1srxh41wmda686y0nh88rnvmffr5f6p46h7vmz8kb1pi9cf"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel data_table edgeR futile_logger ggdendro ggplot2 GO_db GOstats graph GSEABase ismev limma matrixStats org_Hs_eg_db RBGL reshape2 Rgraphviz RJSONIO vegan]; }; MIMOSA = derive2 { name="MIMOSA"; version="1.19.0"; sha256="1z3hj0ivv4zw4sprzr5bhxp5fpzkg37m1sk1y90cfm42p4vyqagg"; depends=[Biobase coda data_table Formula ggplot2 MASS MCMCpack modeest plyr pracma Rcpp RcppArmadillo reshape scales testthat]; }; - MIRA = derive2 { name="MIRA"; version="1.3.0"; sha256="0wsgpmig3vz0iy7395a8091n5w5s5xmi709bd5pppdqw2zwhnmn6"; depends=[Biobase BiocGenerics bsseq data_table GenomicRanges ggplot2 IRanges S4Vectors]; }; + MIRA = derive2 { name="MIRA"; version="1.3.1"; sha256="139wlx2c0bpgljjxrzrcn7s8kvqrs53lrw6nsdnb3v4y7wx2fc8y"; depends=[Biobase BiocGenerics bsseq data_table GenomicRanges ggplot2 IRanges S4Vectors]; }; MLInterfaces = derive2 { name="MLInterfaces"; version="1.61.1"; sha256="1nmcxaa3r34xhzcs063pwggck2yhwvc1ckzyhqabbb41jflnnw3g"; depends=[annotate Biobase BiocGenerics cluster fpc gbm gdata genefilter ggvis hwriter MASS mlbench pls RColorBrewer rda rpart sfsmisc shiny threejs]; }; MLP = derive2 { name="MLP"; version="1.29.0"; sha256="0fqrpnqb9031f3y1qgmvxr0ynygp1rzjg2dsy4g2z98jzwbncznk"; depends=[affy AnnotationDbi gdata gmodels gplots gtools plotrix]; }; - MLSeq = derive2 { name="MLSeq"; version="1.99.8"; sha256="1h72lhvrvkpbl5dil3gk2kw6ax3xpycp87511a5ndzagnl2499js"; depends=[Biobase caret DESeq2 edgeR foreach ggplot2 limma plyr sSeq SummarizedExperiment xtable]; }; + MLSeq = derive2 { name="MLSeq"; version="1.99.9"; sha256="0bjgj44j6xxipp6wskd1cq3kj2j9g3jl8365r9rv5m8vp58nvkl2"; depends=[Biobase caret DESeq2 edgeR foreach ggplot2 limma plyr sSeq SummarizedExperiment xtable]; }; MMDiff2 = derive2 { name="MMDiff2"; version="1.9.0"; sha256="1l3frx6myj4jglypv5il3pgjpm3szq5xfp5p8k8xilahmg98ykh1"; depends=[Biobase Biostrings BSgenome GenomicRanges ggplot2 locfit RColorBrewer Rsamtools S4Vectors shiny]; }; MODA = derive2 { name="MODA"; version="1.7.0"; sha256="0wm5sc2fh5j191128xlxdqmfsh8ix8k33gkcz6yn8rfpj3rdfhzg"; depends=[AMOUNTAIN cluster dynamicTreeCut igraph RColorBrewer WGCNA]; }; MPFE = derive2 { name="MPFE"; version="1.17.0"; sha256="1jalc9ny5lv3h7awrkg5mmagjh15js5rmpqfl7pn15499186fajp"; depends=[]; }; - MSGFgui = derive2 { name="MSGFgui"; version="1.15.0"; sha256="198lczhpgjlv0mq1k4rch4fm0gjm7g65j108ib69n5zbzkcqgbri"; depends=[MSGFplus mzID mzR shiny shinyFiles xlsx]; }; - MSGFplus = derive2 { name="MSGFplus"; version="1.15.0"; sha256="19b61p8ihxni4psfrc7akgrq6aq28wzf73zp0bizwqfkv4lphm7l"; depends=[mzID ProtGenerics]; }; - MSnID = derive2 { name="MSnID"; version="1.15.0"; sha256="167hjrp9zsa84swbrkmjaxc0haza02qzzfg64855rrf0m319g0v0"; depends=[Biobase data_table doParallel dplyr foreach iterators MSnbase mzID mzR ProtGenerics R_cache Rcpp reshape2]; }; - MSnbase = derive2 { name="MSnbase"; version="2.7.1"; sha256="0gc1hysdd3ng6a0n3fqidrwgm2b3x4mlrccrxba5ank312i6f5iq"; depends=[affy Biobase BiocGenerics BiocParallel digest ggplot2 impute IRanges lattice MALDIquant MASS mzID mzR pcaMethods plyr preprocessCore ProtGenerics Rcpp S4Vectors scales vsn XML]; }; - MSstats = derive2 { name="MSstats"; version="3.13.4"; sha256="0vc36h2s1xmird1ghadw0v9r12gxh73xjmgbclfydg0q4i0x6762"; depends=[data_table doSNOW dplyr foreach ggplot2 ggrepel gplots limma lme4 marray MASS minpack_lm preprocessCore randomForest reshape2 snow stringr survival tidyr]; }; - MSstatsQC = derive2 { name="MSstatsQC"; version="1.3.0"; sha256="1sp72cpks1cw3h6j9lzscs9lf9s9gl092h3jnxixkzf44cjlbxah"; depends=[dplyr ggExtra ggplot2 MSnbase plotly qcmetrics RecordLinkage]; }; - MSstatsQCgui = derive2 { name="MSstatsQCgui"; version="1.1.0"; sha256="1cr6l6axi7cqqb547dhsha7zdn85grgvvq2436skxws172pl0pv3"; depends=[dplyr ggExtra gridExtra MSstatsQC plotly RecordLinkage shiny]; }; + MPRAnalyze = derive2 { name="MPRAnalyze"; version="0.99.11"; sha256="0vqy590j0jfx00lifmavdvl6bd93k85kpm67575z3hd7lffrmawm"; depends=[BiocParallel progress SummarizedExperiment]; }; + MSGFgui = derive2 { name="MSGFgui"; version="1.15.1"; sha256="01mdpd0ph49zjvhynb4cq8m60k1bd4xw72bay2ly19akp72lwcpz"; depends=[MSGFplus mzID mzR shiny shinyFiles xlsx]; }; + MSGFplus = derive2 { name="MSGFplus"; version="1.15.1"; sha256="15ljj766719690mb37alih2001vcm8az92j0qgyfdb80c9gm8my6"; depends=[mzID ProtGenerics]; }; + MSnID = derive2 { name="MSnID"; version="1.15.1"; sha256="08z17czddqlfj6hppqg43s45ldh3ck6qay14iyrpsa809xqda1yw"; depends=[Biobase data_table doParallel dplyr foreach iterators MSnbase mzID mzR ProtGenerics R_cache Rcpp reshape2]; }; + MSnbase = derive2 { name="MSnbase"; version="2.7.12"; sha256="15vs3dca3ml859005wpwk84c0d1si0h65g9hnkvd0nw05wsp7g81"; depends=[affy Biobase BiocGenerics BiocParallel digest ggplot2 impute IRanges lattice MALDIquant MASS mzID mzR pcaMethods plyr preprocessCore ProtGenerics Rcpp S4Vectors scales vsn XML]; }; + MSstats = derive2 { name="MSstats"; version="3.13.5"; sha256="06rhwn9fk5dr52p73mxi04x86s1c8ixvw3kw01qxygd6x0acshy4"; depends=[data_table doSNOW dplyr foreach ggplot2 ggrepel gplots limma lme4 marray MASS minpack_lm preprocessCore randomForest reshape2 snow stringr survival tidyr]; }; + MSstatsQC = derive2 { name="MSstatsQC"; version="1.99.3"; sha256="1rbkn12pgy8g6s15lizaymkbc5k5cb07gndzy65w0zsbm2w5vaz4"; depends=[dplyr ggExtra ggplot2 MSnbase plotly qcmetrics RecordLinkage]; }; + MSstatsQCgui = derive2 { name="MSstatsQCgui"; version="1.1.1"; sha256="0s3invrc3601y8hai3pxbd1k0v6vvr7n95zpbxj5cjqdv3yn52ir"; depends=[dplyr ggExtra gridExtra MSstatsQC plotly RecordLinkage shiny]; }; + MSstatsTMT = derive2 { name="MSstatsTMT"; version="0.99.9"; sha256="08plgvwwhrjyby45gq5s4b3nxb53az6dayhgsk96fhxa3q7dbmds"; depends=[data_table dplyr ggplot2 limma lme4 matrixStats MSstats nlme reshape2 tidyr]; }; MVCClass = derive2 { name="MVCClass"; version="1.55.0"; sha256="0xkwwvq66cnmac52ik95siq78ny9nfbgp4xncdamq7gmn7wasacr"; depends=[]; }; - MWASTools = derive2 { name="MWASTools"; version="1.5.1"; sha256="015zdbmxlpv9y2qsg6ny59ljy8cn2vz4grmwa8dragr7pmivqikf"; depends=[boot car ComplexHeatmap ggplot2 glm2 gridExtra igraph KEGGgraph KEGGREST ppcor qvalue RCurl SummarizedExperiment]; }; + MWASTools = derive2 { name="MWASTools"; version="1.5.6"; sha256="1axhfzvinhg8lfgn703rl76bxj0b1dz0rmiapssqvzzm6bg8lgmf"; depends=[boot car ComplexHeatmap ggplot2 glm2 gridExtra igraph KEGGgraph KEGGREST ppcor qvalue RCurl SummarizedExperiment]; }; MantelCorr = derive2 { name="MantelCorr"; version="1.51.0"; sha256="03sqqfi06hcprya25aj3p9sa35x9n2m9ffnplnh6gqmcv22fj75k"; depends=[]; }; MassArray = derive2 { name="MassArray"; version="1.33.0"; sha256="1ni7dw8lk73n3b19m0rnd8cszb4p6la6msld0z63lgvih4m3z805"; depends=[]; }; MassSpecWavelet = derive2 { name="MassSpecWavelet"; version="1.47.0"; sha256="0mq6xfdj11m49xi6x14lp6kh9idfbrmy9kx7jpjm90hwdjnl48ym"; depends=[waveslim]; }; MatrixRider = derive2 { name="MatrixRider"; version="1.13.0"; sha256="0plcabv6wc7s4q7ippi7i9ckc3lg4pwxdm32gpsmmssff37jx41c"; depends=[Biostrings IRanges S4Vectors TFBSTools XVector]; }; - MaxContrastProjection = derive2 { name="MaxContrastProjection"; version="1.5.0"; sha256="10hdj1kb9ywwgzf7nj7hzmh2hr5si6ps0h120nkdjmjscyd2sw26"; depends=[EBImage]; }; - MeSHDbi = derive2 { name="MeSHDbi"; version="1.17.0"; sha256="1m73m7dgcl1n2rgb8c8qar65w18b1qq42n458yw3di88xly6wmb3"; depends=[AnnotationDbi Biobase BiocGenerics RSQLite]; }; + MaxContrastProjection = derive2 { name="MaxContrastProjection"; version="1.5.1"; sha256="1ybz5ij152pdbnn47p5sprlm8lzdgzazv0h890dbh9z3k9b7vbli"; depends=[EBImage]; }; + MeSHDbi = derive2 { name="MeSHDbi"; version="1.17.1"; sha256="1qxbpvl97j187bl9nqib6z580f692apdrsdw8qlpk1lw197sv7np"; depends=[AnnotationDbi Biobase BiocGenerics RSQLite]; }; MeasurementError_cor = derive2 { name="MeasurementError.cor"; version="1.53.0"; sha256="0j6v368naid00b1igibjp94yxyz0sqhsr8lxgxv0xwy85ivsqlbi"; depends=[]; }; MergeMaid = derive2 { name="MergeMaid"; version="2.53.0"; sha256="1dn5shrkyhph13x5qyygvp10jd8acs6rka9vr3g9dh0rq4mx4114"; depends=[Biobase MASS survival]; }; - Mergeomics = derive2 { name="Mergeomics"; version="1.9.0"; sha256="1qs7jcgg5ah2iw6lcfwnp9lag5cah0d0gg9jk2qhrnqi22cjrymf"; depends=[]; }; - MetCirc = derive2 { name="MetCirc"; version="1.11.0"; sha256="1v37sbd1c3m5mqyqlm7jcv1dascwwb1m9fm1cr2rn8r2whi9yfib"; depends=[amap circlize scales shiny]; }; - MetaCyto = derive2 { name="MetaCyto"; version="1.3.2"; sha256="19kvmrzfakyjavd0y6j2ixzmlm070fdz6sygn0vczpdkqmir5vqd"; depends=[cluster fastcluster flowCore FlowSOM ggplot2 metafor tidyr]; }; + Mergeomics = derive2 { name="Mergeomics"; version="1.9.1"; sha256="0gz7vx1gvng7dlkwfz45i1cpsdhazv9w5idbxjsh3rxwpll4yvd5"; depends=[]; }; + MetCirc = derive2 { name="MetCirc"; version="1.11.3"; sha256="12f9cj5wzavd51kbyiz380fhb2zrlybakm4z7rnpvcx0g8q7l3y3"; depends=[amap circlize scales shiny]; }; + MetID = derive2 { name="MetID"; version="0.99.8"; sha256="196ha93x99p7dhhwnr4b4xddkjjw2m1q30bn238msndz4l5chmri"; depends=[ChemmineR devtools igraph Matrix stringr]; }; + MetNet = derive2 { name="MetNet"; version="0.99.24"; sha256="15gqzi23r7g43awk67qnqxlpgyq0zb9z06gq60kd0j05pwhfpgqz"; depends=[BiocParallel bnlearn mpmi parmigene ppcor rfPermute sna stabs WGCNA]; }; + MetaCyto = derive2 { name="MetaCyto"; version="1.3.4"; sha256="0j97f77ailb5ih6ky3svcf7lmr6qk352p59mbx7rcxgg7fdajc0l"; depends=[cluster fastcluster flowCore FlowSOM ggplot2 metafor tidyr]; }; MetaNeighbor = derive2 { name="MetaNeighbor"; version="1.1.0"; sha256="1jj4jh27ysl3ilhw20pf1srw0n47c0dbc3s760blwbf5qnrlhivv"; depends=[beanplot gplots RColorBrewer SummarizedExperiment]; }; Metab = derive2 { name="Metab"; version="1.15.0"; sha256="12l43jyrsq1dcbbrkr6k66hrcwkx8ynyniz3cfs17im09nrj20jz"; depends=[pander svDialogs xcms]; }; - MetaboSignal = derive2 { name="MetaboSignal"; version="1.11.0"; sha256="0cpmbq55d7bf9mky0m0ydg1qs60sxq8wl2apkhvnyfhifv3f316q"; depends=[AnnotationDbi biomaRt EnsDb_Hsapiens_v75 hpar igraph KEGGgraph KEGGREST MWASTools org_Hs_eg_db RCurl]; }; - MethPed = derive2 { name="MethPed"; version="1.9.0"; sha256="0xi7s75ph09xi8f57hnmlfzr4xazj875wqc98dr198r5985sl99v"; depends=[Biobase randomForest]; }; + MetaboSignal = derive2 { name="MetaboSignal"; version="1.11.0"; sha256="0cpmbq55d7bf9mky0m0ydg1qs60sxq8wl2apkhvnyfhifv3f316q"; depends=[AnnotationDbi biomaRt EnsDb_Hsapiens_v75 hpar igraph KEGGgraph KEGGREST MWASTools mygene org_Hs_eg_db RCurl]; }; + MethPed = derive2 { name="MethPed"; version="1.9.1"; sha256="0x83lz61vn74z9nps99a0f8jh34impkm1523wzp0gr24gcmikb8y"; depends=[Biobase randomForest]; }; MethTargetedNGS = derive2 { name="MethTargetedNGS"; version="1.13.0"; sha256="02kc184ql68rqll95sza94qnzjgh8wvg76h3z5r3lqmxdd7bblz9"; depends=[Biostrings gplots seqinr stringr]; }; MethylAid = derive2 { name="MethylAid"; version="1.15.0"; sha256="15xkcbjj7mcmbm5di1bxslfiipnbdarsfsg16kmd530v9lmll331"; depends=[Biobase BiocGenerics BiocParallel ggplot2 gridBase hexbin matrixStats minfi RColorBrewer shiny SummarizedExperiment]; }; - MethylMix = derive2 { name="MethylMix"; version="2.11.0"; sha256="1lm88i5b03i08s4dydmw7jjxp5qpn5nz72by74nqzc36m6ignk8k"; depends=[data_table digest foreach ggplot2 impute limma R_matlab RColorBrewer RCurl RPMM]; }; - MethylSeekR = derive2 { name="MethylSeekR"; version="1.21.0"; sha256="0zpd930n3vyv94yic8zjfgl68m3kr4z35ab5lzprjmpyy8hg7szn"; depends=[BSgenome geneplotter GenomicRanges IRanges mhsmm rtracklayer]; }; + MethylMix = derive2 { name="MethylMix"; version="2.11.2"; sha256="02wsil0s5jp6lh4jlh9sppz9ir8lk849jlxagj48s9napxbw65fc"; depends=[data_table digest foreach ggplot2 impute limma R_matlab RColorBrewer RCurl RPMM]; }; + MethylSeekR = derive2 { name="MethylSeekR"; version="1.21.1"; sha256="18hcd43z15949vsd7s02zg85dpyf9gkc7dky70xz8jv8gbmizl56"; depends=[BSgenome geneplotter GenomicRanges IRanges mhsmm rtracklayer]; }; Mfuzz = derive2 { name="Mfuzz"; version="2.41.0"; sha256="0hdjkg90kk7igjx26hfm9wfh7lymm0cgxsn263a7sy1cb6ld7nx8"; depends=[Biobase e1071 tkWidgets]; }; MiChip = derive2 { name="MiChip"; version="1.35.0"; sha256="19w0kzyg6s950g0p4a4gdkkblsz30zv57rs3dqzqh1rgcrcb4gpf"; depends=[Biobase]; }; MiPP = derive2 { name="MiPP"; version="1.53.0"; sha256="0ii5vlx5gwkz01ivg0qjml8q5zqdvz21rrxgqhx2zdqwi6cbfww0"; depends=[Biobase e1071 MASS]; }; - MiRaGE = derive2 { name="MiRaGE"; version="1.23.0"; sha256="1inywp84lh8qwairxrb8cvql171mg4jrg66aqg0nhihqm0mjwnn5"; depends=[AnnotationDbi Biobase BiocGenerics S4Vectors]; }; + MiRaGE = derive2 { name="MiRaGE"; version="1.23.3"; sha256="02nrjckzywcfm0b34f076qkpsaa9n6p57pjd9chhcnns0i7kl2ji"; depends=[AnnotationDbi Biobase BiocGenerics BiocManager S4Vectors]; }; MineICA = derive2 { name="MineICA"; version="1.21.0"; sha256="1n711vz5g1rrz6hnm88w3ycm0yczq4a0h2rg635g7x33sszjr3dk"; depends=[annotate AnnotationDbi Biobase BiocGenerics biomaRt cluster colorspace fastICA foreach fpc ggplot2 GOstats graph gtools Hmisc igraph JADE lumi lumiHumanAll_db marray mclust plyr RColorBrewer Rgraphviz scales xtable]; }; + MinimumDistance = derive2 { name="MinimumDistance"; version="1.25.2"; sha256="1pv6h2p0y6r32dz99b61bdgyd86nnmzs7dph9xk7a5rrgzaj1bb8"; depends=[Biobase BiocGenerics data_table DNAcopy ff foreach GenomeInfoDb GenomicRanges IRanges lattice matrixStats oligoClasses S4Vectors SummarizedExperiment VanillaICE]; }; Mirsynergy = derive2 { name="Mirsynergy"; version="1.17.0"; sha256="0n8vspalfwisnfk486i90pxi2hd2xi32b36pfl3ifrpqyr2rylix"; depends=[ggplot2 gridExtra igraph Matrix RColorBrewer reshape scales]; }; MmPalateMiRNA = derive2 { name="MmPalateMiRNA"; version="1.31.0"; sha256="10cdaprs899j3fswds8vx4gm2xp5kcx11l53ymxlyjr5592887fm"; depends=[Biobase lattice limma statmod vsn xtable]; }; - MoPS = derive2 { name="MoPS"; version="1.15.0"; sha256="0bmxwf1i2szan2wn4gxmf4qskrsaydkkrbg7agmgzgbzhvb47dgs"; depends=[Biobase]; }; - MoonlightR = derive2 { name="MoonlightR"; version="1.7.1"; sha256="040hkp66mr432762wkwyyhxpsqqrhkri06szl7wyfpmf3gmydj9i"; depends=[Biobase circlize clusterProfiler doParallel DOSE foreach GEOquery gplots HiveR limma parmigene randomForest RColorBrewer RISmed SummarizedExperiment TCGAbiolinks]; }; + MoPS = derive2 { name="MoPS"; version="1.15.1"; sha256="0nmk4iapypdak2z4zmlwv2crvgzh10l8vvajkiszwakdpsc734fd"; depends=[Biobase]; }; + MoonlightR = derive2 { name="MoonlightR"; version="1.7.2"; sha256="1j2k09hcg5z65yxaml6yhxffsz3dmh56j64w625rqxmfk0b1zyii"; depends=[Biobase circlize clusterProfiler doParallel DOSE foreach GEOquery gplots HiveR limma parmigene randomForest RColorBrewer RISmed SummarizedExperiment TCGAbiolinks]; }; MotIV = derive2 { name="MotIV"; version="1.37.0"; sha256="0wzf7dzw063i613gx8pa3sf1hvqc52yhb8dqpy87g3smalfj3qr3"; depends=[BiocGenerics Biostrings IRanges lattice rGADEM S4Vectors]; }; - MotifDb = derive2 { name="MotifDb"; version="1.23.0"; sha256="1s0191bn7418bkl5zha6a99wnznznrndk13z8jhzjcpp4kk6m1f7"; depends=[BiocGenerics Biostrings IRanges rtracklayer S4Vectors splitstackshape]; }; + MotifDb = derive2 { name="MotifDb"; version="1.23.14"; sha256="0v7n0682w9gsnp7vknhwfc6baimsjcqb5gm3bglnsp6kr4khjhkx"; depends=[BiocGenerics Biostrings IRanges rtracklayer S4Vectors splitstackshape]; }; Mulcom = derive2 { name="Mulcom"; version="1.31.0"; sha256="0l8wn2ma3s55w86wv3779y39vsp45rfa5nkjj1cjn26qc2ay0r0f"; depends=[Biobase fields]; }; - MultiAssayExperiment = derive2 { name="MultiAssayExperiment"; version="1.7.14"; sha256="1wwi9dgf41zvkv2zkrx6wvk15zhml618mz3ki7gzshzp3p9wxwr7"; depends=[Biobase BiocGenerics GenomicRanges IRanges S4Vectors SummarizedExperiment tidyr]; }; + MultiAssayExperiment = derive2 { name="MultiAssayExperiment"; version="1.7.22"; sha256="1pw80vr48jii32mxd8rwshi3q6ccr4c3x3fr0bxdkbf9ypa2l57j"; depends=[Biobase BiocGenerics GenomicRanges IRanges S4Vectors SummarizedExperiment tidyr]; }; + MultiDataSet = derive2 { name="MultiDataSet"; version="1.9.1"; sha256="19j4jd5gh363l6p3jmjfcp14y1vmixg20lcpqjs78zxk1saalhz3"; depends=[Biobase BiocGenerics GenomicRanges ggplot2 ggrepel IRanges limma qqman S4Vectors SummarizedExperiment]; }; MultiMed = derive2 { name="MultiMed"; version="2.3.0"; sha256="085vmkq1hd9x1za5c21gvndyl46ymd7w5hwixvhnsclzb4r7gav7"; depends=[]; }; - MutationalPatterns = derive2 { name="MutationalPatterns"; version="1.7.0"; sha256="1iy96za3b31sm9kkbg6vf17a88pyhdk580yrhl580ggwjjkn3fz6"; depends=[BiocGenerics Biostrings cowplot GenomeInfoDb GenomicRanges ggdendro ggplot2 IRanges NMF plyr pracma reshape2 S4Vectors SummarizedExperiment VariantAnnotation]; }; - NADfinder = derive2 { name="NADfinder"; version="1.5.0"; sha256="0wjnfi09d686ypifgqrn191hh8xgv7m87fnak84ss5ka9lwhii54"; depends=[ATACseqQC baseline BiocGenerics corrplot csaw EmpiricalBrownsMethod GenomeInfoDb GenomicAlignments GenomicRanges IRanges limma metap Rsamtools rtracklayer S4Vectors signal SummarizedExperiment trackViewer]; }; + MutationalPatterns = derive2 { name="MutationalPatterns"; version="1.7.3"; sha256="1krq37chmnqzl9dlk6dwjy6kasa511s2qc8hndg5l0am12lmn5bg"; depends=[BiocGenerics Biostrings cowplot GenomeInfoDb GenomicRanges ggdendro ggplot2 IRanges NMF plyr pracma reshape2 S4Vectors SummarizedExperiment VariantAnnotation]; }; + NADfinder = derive2 { name="NADfinder"; version="1.5.4"; sha256="0qgnpq9ci3344kjba8jfs6lbnrdhsyjvb5vxrd0p4v08j3fg4q55"; depends=[ATACseqQC baseline BiocGenerics corrplot csaw EmpiricalBrownsMethod GenomeInfoDb GenomicAlignments GenomicRanges IRanges limma metap rbamtools Rsamtools rtracklayer S4Vectors signal SummarizedExperiment trackViewer]; }; + NBSplice = derive2 { name="NBSplice"; version="0.99.9"; sha256="181msya2wpcqsn3xyiqzghl58r394ilw5khmzihyq5b1bq3x7rmr"; depends=[BiocParallel car edgeR ggplot2 MASS mppa reshape2]; }; NCIgraph = derive2 { name="NCIgraph"; version="1.29.0"; sha256="06jmifga56d9cnqp4wb9hm6g32fhsk6n0g70qqw1k4l5k7m2v5wv"; depends=[graph KEGGgraph R_methodsS3 RBGL RCy3]; }; - NGScopy = derive2 { name="NGScopy"; version="1.15.0"; sha256="1b8190zyq3sixmvg9kw7jshxsyb2zicfm0w6qfgah0aq9jgb9gxz"; depends=[changepoint rbamtools Xmisc]; }; - NOISeq = derive2 { name="NOISeq"; version="2.25.0"; sha256="18hz9g1p1kacb1f4b3sxfrp1gl6wk87p20d5580krrqk9a69al2n"; depends=[Biobase Matrix]; }; + NGScopy = derive2 { name="NGScopy"; version="1.15.1"; sha256="0azw7zq7bz7haifmng9y59jbhh7nfhz6k886gffdvlnbrn3k4kbr"; depends=[changepoint rbamtools Xmisc]; }; + NOISeq = derive2 { name="NOISeq"; version="2.25.1"; sha256="094jrp87nhjyi31qbg719ny0dqki5blf6k86d4sbh3vqngakcjg3"; depends=[Biobase Matrix]; }; NTW = derive2 { name="NTW"; version="1.31.0"; sha256="183y8sqf3h4ik1cm6zhvzmijc8kanmv3lvqh4v4cb7qhvgrgb3ln"; depends=[mvtnorm]; }; NanoStringDiff = derive2 { name="NanoStringDiff"; version="1.11.0"; sha256="0sl0chkrx8s4625ch43x9r8n5k7cd0y18cinafrligqfrwnc5yx0"; depends=[Biobase matrixStats Rcpp]; }; NanoStringQCPro = derive2 { name="NanoStringQCPro"; version="1.13.0"; sha256="1km8i428rn4q5b89d56bcnwkrpvhf67bzmxwzxfdwm1qr956vab2"; depends=[AnnotationDbi Biobase knitr NMF org_Hs_eg_db png RColorBrewer]; }; NarrowPeaks = derive2 { name="NarrowPeaks"; version="1.25.1"; sha256="1lqs0rcx52c3hnx89wngmyyhn02a7nf007x95z85rqzrclgy27ki"; depends=[BiocGenerics CSAR fda GenomeInfoDb GenomicRanges ICSNP IRanges S4Vectors]; }; - NetPathMiner = derive2 { name="NetPathMiner"; version="1.17.0"; sha256="0p6syyn31nfx3qgw8yv6m7jry2prnjnf6pc9qf889407438q11cf"; depends=[igraph]; }; - NetSAM = derive2 { name="NetSAM"; version="1.21.0"; sha256="15crfdd8a7wlmn3vmwqxzfihaph64lay7k75dx5mjwswp01w5g37"; depends=[graph igraph seriation]; }; - NormqPCR = derive2 { name="NormqPCR"; version="1.27.0"; sha256="1481sv255pq76scmbwvw66blknww2w8d9c4md4gmsgkifwnwvqjf"; depends=[Biobase qpcR RColorBrewer ReadqPCR]; }; + NeighborNet = derive2 { name="NeighborNet"; version="0.99.5"; sha256="1xwpzkfmhgiswwyls5q9cm8qnz7xvp3axhm95cvwfqxwbp8j81mc"; depends=[graph]; }; + NetPathMiner = derive2 { name="NetPathMiner"; version="1.17.1"; sha256="0hfdi6359vl27m5fa8fr9pr4xw8pqdx3qjbw6laigylapn8vwy6n"; depends=[igraph]; }; + NetSAM = derive2 { name="NetSAM"; version="1.21.1"; sha256="0h1wld8p7pvyf7jfgcdgykg34dccf7ykrfc7jqv0i5aip4zjxpd0"; depends=[graph igraph seriation]; }; + NormalyzerDE = derive2 { name="NormalyzerDE"; version="0.99.25"; sha256="00x86np9265klpvzv72xcdnnqfkaa1ygja4hrlpx3iaz9r2x3k4z"; depends=[ape Biobase car ggplot2 limma MASS matrixStats preprocessCore raster RcmdrMisc SummarizedExperiment vsn]; }; + NormqPCR = derive2 { name="NormqPCR"; version="1.27.2"; sha256="18bsw0hp7m48vh85ajyxhp447agrzhs5x0jy4684p77xrlhqfmqz"; depends=[Biobase qpcR RColorBrewer ReadqPCR]; }; NuPoP = derive2 { name="NuPoP"; version="1.31.0"; sha256="1sfv98q0z3x5lzmvhbjh1k65flxhsjfx5nqhlhhihcs5rjx8pa3h"; depends=[]; }; OCplus = derive2 { name="OCplus"; version="1.55.0"; sha256="0nn2adv9v0j0dhz93kd2d3bh1fx31vg3qk9sygrf1xbwqppmcyp9"; depends=[akima multtest]; }; OGSA = derive2 { name="OGSA"; version="1.11.0"; sha256="063y4bzxiwjb0nvh3lkkgd39p59sy9drzcckpkxm5yxm3scrdy2f"; depends=[Biobase gplots limma]; }; OLIN = derive2 { name="OLIN"; version="1.59.0"; sha256="0q0cr7yfprvzl01dgb4mwpbwnj1yfpn4myf8jksckiy0s2cwinra"; depends=[limma locfit marray]; }; OLINgui = derive2 { name="OLINgui"; version="1.55.0"; sha256="1wjsb9h443d82x6vq70plhv7cgc3n7imvjlian1a0hd9dbcx9ss3"; depends=[marray OLIN tkWidgets widgetTools]; }; - OPWeight = derive2 { name="OPWeight"; version="1.3.0"; sha256="1jjpz8inwfwpky316l61lka8g0dp69qr8kbgi6g54f0y0kjcq5fa"; depends=[MASS qvalue tibble]; }; - ORFik = derive2 { name="ORFik"; version="1.1.0"; sha256="03fv9dr9jpzavrnbjd1pp6jlbi5i3sbg6zbi3p7z95rm8j1cds6x"; depends=[Biostrings data_table GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rcpp Rsamtools rtracklayer S4Vectors]; }; + OMICsPCA = derive2 { name="OMICsPCA"; version="0.99.17"; sha256="1na9swmy7z5xnbvp7h2x6s1jgdhifwdh36ad7g7jlhfc7v8a3kqh"; depends=[cluster clValid corrplot cowplot data_table factoextra FactoMineR fpc GenomeInfoDb ggplot2 HelloRanges IRanges kableExtra magick MASS MultiAssayExperiment NbClust OMICsPCAdata pdftools PerformanceAnalytics reshape2 rgl rmarkdown rtracklayer tidyr]; }; + OPWeight = derive2 { name="OPWeight"; version="1.3.1"; sha256="17xrv1ad4wv20q4lwgxpr58sn73klx165h2pvjwly8v68hx1713s"; depends=[MASS qvalue tibble]; }; + ORFik = derive2 { name="ORFik"; version="1.1.14"; sha256="1cq43ha9brllyn1p72978xcvb45iapkz2hsfh6anbh4xdhv9pbxg"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rcpp Rsamtools rtracklayer S4Vectors]; }; OSAT = derive2 { name="OSAT"; version="1.29.0"; sha256="174jna1bl6vkbr3zypyfnhakfm7bm6llfcgghr4m9bvc8a6hxq6b"; depends=[]; }; OTUbase = derive2 { name="OTUbase"; version="1.31.0"; sha256="0p86dn54pipqy3v74iwgvs2xqxypq6iq58y9m0pqbncryrszcs0p"; depends=[Biobase Biostrings IRanges S4Vectors ShortRead vegan]; }; - OmaDB = derive2 { name="OmaDB"; version="1.1.1"; sha256="1y2xflz6cbdhxsyd0nx131amxmq4jjfcgma34vrl6jzl9y9l96ga"; depends=[ape Biostrings GenomicRanges httr IRanges plyr topGO]; }; + OUTRIDER = derive2 { name="OUTRIDER"; version="0.99.31"; sha256="1wihfldpj8hq86z9ln5c06rr5kv8cjx5bmcqz5cx58vxg3sr86h4"; depends=[BBmisc Biobase BiocGenerics BiocParallel data_table DESeq2 GenomicFeatures GenomicRanges ggplot2 ggpubr gplots IRanges matrixStats pcaMethods plotly plyr PRROC RColorBrewer Rcpp RcppArmadillo reticulate S4Vectors scales SummarizedExperiment]; }; + OmaDB = derive2 { name="OmaDB"; version="1.1.4"; sha256="192wpb9f7vwkrlq2y2r7kicppqc5c9hb7nk00im06588mdldbp4p"; depends=[ape Biostrings GenomicRanges httr IRanges jsonlite plyr topGO]; }; OmicCircos = derive2 { name="OmicCircos"; version="1.19.0"; sha256="03laa1vjjxgrpcz2sxdq9dq0fa2s04jvf56q03h5gx8hkfn4rv7v"; depends=[GenomicRanges]; }; - OmicsMarkeR = derive2 { name="OmicsMarkeR"; version="1.13.0"; sha256="1fqmyfpjmpx3ihbvf5w15v48w2zbkx8iyyajc9gpsb033abzl3fm"; depends=[assertive assertive_base caret caTools data_table DiscriMiner e1071 foreach gbm glmnet pamr permute plyr randomForest]; }; - Onassis = derive2 { name="Onassis"; version="1.3.0"; sha256="1smj5ii8mblmkg1p8ssi5xq5aqa13nl7fc0nlpbflv3cpssimzjs"; depends=[AnnotationDbi data_table GEOmetadb OnassisJavaLibs RCurl rJava RSQLite]; }; - OncoScore = derive2 { name="OncoScore"; version="1.9.0"; sha256="0ckcnhr5f6lcarg6zjyszmf5yl6gw1g09j6jnqq87pk9g7nsi3n6"; depends=[biomaRt]; }; - OncoSimulR = derive2 { name="OncoSimulR"; version="2.11.0"; sha256="02kbkpjkpi3srxgz8jcyk1dhsc2q19ghbd3p160v2sf966g1286d"; depends=[car data_table dplyr ggplot2 ggrepel graph gtools igraph nem RColorBrewer Rcpp Rgraphviz smatr]; }; + OmicsMarkeR = derive2 { name="OmicsMarkeR"; version="1.13.1"; sha256="0fx2jjyn196344indfpdiaf63abvxm1rw7ris378rzpl282kch2m"; depends=[assertive assertive_base caret caTools data_table DiscriMiner e1071 foreach gbm glmnet pamr permute plyr randomForest]; }; + Onassis = derive2 { name="Onassis"; version="1.3.7"; sha256="11ifi7bsdy6yrgs54pglaqhgw86zndn98qhygzkw7sxgb8b7ly18"; depends=[AnnotationDbi data_table DT GEOmetadb knitr OnassisJavaLibs RCurl rJava RSQLite]; }; + OncoScore = derive2 { name="OncoScore"; version="1.9.3"; sha256="07pvd6alsbvm4wjlz3m3dnl0hyzv33fvznzxhcsgh1sz2kv92aya"; depends=[biomaRt]; }; + OncoSimulR = derive2 { name="OncoSimulR"; version="2.11.1"; sha256="1nkwfc2gcmfn8pnz6zk7bywr1n75jrrfyhmbj0mzzhp4cjxsrj8d"; depends=[car data_table dplyr ggplot2 ggrepel graph gtools igraph nem RColorBrewer Rcpp Rgraphviz smatr]; }; OrderedList = derive2 { name="OrderedList"; version="1.53.0"; sha256="1pdv3pih594x3bkrzmm7ab418mxjsa17qbv0dpmw4w1yyvrlyz5m"; depends=[Biobase twilight]; }; - Organism_dplyr = derive2 { name="Organism.dplyr"; version="1.9.0"; sha256="196ispr6m2r1fc4l4jm985njh8xz7qxcsr8w0kvffv63zx0zy807"; depends=[AnnotationDbi AnnotationFilter BiocFileCache DBI dbplyr dplyr GenomeInfoDb GenomicFeatures GenomicRanges IRanges RSQLite S4Vectors]; }; - OrganismDbi = derive2 { name="OrganismDbi"; version="1.23.0"; sha256="0mjav9c9w5mwmkdisci9c7i993xyvqbmsa8nw9kyhqirsxf0p7cc"; depends=[AnnotationDbi Biobase BiocGenerics BiocInstaller DBI GenomicFeatures GenomicRanges graph IRanges RBGL S4Vectors]; }; + Organism_dplyr = derive2 { name="Organism.dplyr"; version="1.9.2"; sha256="1n87ajas2wrrpkpmy0n9zim6f1by9vvqk9wh25kk4rxp3500d8gh"; depends=[AnnotationDbi AnnotationFilter BiocFileCache DBI dbplyr dplyr GenomeInfoDb GenomicFeatures GenomicRanges IRanges RSQLite S4Vectors]; }; + OrganismDbi = derive2 { name="OrganismDbi"; version="1.23.2"; sha256="18l7ki8vaavzy0380gw1bhpjf5xs3naaq44xfam307pl5h7xr8c0"; depends=[AnnotationDbi Biobase BiocGenerics BiocManager DBI GenomicFeatures GenomicRanges graph IRanges RBGL S4Vectors]; }; Oscope = derive2 { name="Oscope"; version="1.11.0"; sha256="1x8z5i3v42787iv9hddp65cggnlvr7xa9kippi0sn0wr7gd79zcw"; depends=[BiocParallel cluster EBSeq testthat]; }; OutlierD = derive2 { name="OutlierD"; version="1.45.0"; sha256="085nk41icxzx8halczi4kjd262y8dfxq6lrhwiy8qjb216hbrln6"; depends=[Biobase quantreg]; }; - PAA = derive2 { name="PAA"; version="1.15.0"; sha256="06slcqrpcvz713ga5vl2w0dyswqb78nnqvvf0dxi5cdw8g3h58gs"; depends=[e1071 gplots gtools limma MASS mRMRe randomForest Rcpp ROCR sva]; }; + PAA = derive2 { name="PAA"; version="1.15.2"; sha256="16w6xc05gs9ynj01xkrk7gf0qvqknfpicayik5qlm7gmm1k43hm8"; depends=[e1071 gplots gtools limma MASS mRMRe randomForest Rcpp ROCR sva]; }; PADOG = derive2 { name="PADOG"; version="1.23.0"; sha256="10libml1j14yy70s22yf8i4mh8awmnx5a94b3krmh6py2xlw41nj"; depends=[AnnotationDbi Biobase doRNG foreach GSA hgu133a_db hgu133plus2_db KEGG_db KEGGdzPathwaysGEO limma nlme]; }; PANR = derive2 { name="PANR"; version="1.27.0"; sha256="0zr55whhmqyic41chlzxhrn081ray8gl90llb6rwigvmzhfjabyr"; depends=[igraph MASS pvclust RedeR]; }; PAPi = derive2 { name="PAPi"; version="1.21.0"; sha256="1qnbqa72w1734j6rbdbays1f4ysl2b1r65p2hi580zwwi6isaa3i"; depends=[KEGGREST svDialogs]; }; PCAN = derive2 { name="PCAN"; version="1.9.0"; sha256="14ph4mk4svinwpy0rw2b3n96dswahw6273lggw2blp9s24a56a1h"; depends=[BiocParallel]; }; PCpheno = derive2 { name="PCpheno"; version="1.43.0"; sha256="004qx7rclh2q9bbrqf4d54jlzpha8vg0lbaf67gf42ivav0fl908"; depends=[annotate AnnotationDbi Biobase Category GO_db graph GSEABase KEGG_db ppiData ppiStats ScISI SLGI]; }; PECA = derive2 { name="PECA"; version="1.17.0"; sha256="0p4vg0kcrypxm4g8al50rcvrk10lqs23mc00hrd1s8ydycvgd26a"; depends=[affy aroma_affymetrix aroma_core genefilter limma preprocessCore ROTS]; }; - PGA = derive2 { name="PGA"; version="1.11.2"; sha256="08ksqsrpx8mj3mbdbvnbx9bnwxqskkyd340a13r76f5d1p44086m"; depends=[AnnotationDbi biomaRt Biostrings data_table GenomicFeatures GenomicRanges ggplot2 IRanges Nozzle_R1 pheatmap RCurl Rsamtools RSQLite rTANDEM rtracklayer S4Vectors stringr VariantAnnotation]; }; + PGA = derive2 { name="PGA"; version="1.11.4"; sha256="1dcig05dglia3ixymm1s7hzxf5fa7p6bgcwlf66qdx72iagr9ivp"; depends=[AnnotationDbi biomaRt Biostrings customProDB data_table GenomicFeatures GenomicRanges ggplot2 IRanges Nozzle_R1 pheatmap RCurl Rsamtools RSQLite rTANDEM rtracklayer S4Vectors stringr VariantAnnotation]; }; PGSEA = derive2 { name="PGSEA"; version="1.55.0"; sha256="07ynkcxppvm8s525y10ly6jcc0ga93a8sqihdxhs1yg092pcbx64"; depends=[annaffy AnnotationDbi Biobase GO_db KEGG_db]; }; PICS = derive2 { name="PICS"; version="2.25.0"; sha256="1qfv4ddkym5s7171i0c4s5v3x8liaxngpv40y362cr895wa63mwm"; depends=[BiocGenerics GenomicAlignments GenomicRanges IRanges Rsamtools S4Vectors]; }; PING = derive2 { name="PING"; version="2.25.0"; sha256="1lgvn09a1frb6cqrnrvmyzlwm7rgis61wd1gqv5y6pf0w6m6ya9k"; depends=[BiocGenerics BSgenome chipseq fda GenomicRanges Gviz IRanges PICS S4Vectors]; }; PLPE = derive2 { name="PLPE"; version="1.41.0"; sha256="11a1wsgzssn5nqbmxxrfqk7js6h3y0zcxgfyqr5hvfz6licl2q3v"; depends=[Biobase LPE MASS]; }; POST = derive2 { name="POST"; version="1.5.0"; sha256="099q5w5sgpamgncga096szl40i3lzjnphki2kfby0svkkvjiyrhl"; depends=[Biobase CompQuadForm GSEABase Matrix survival]; }; PPInfer = derive2 { name="PPInfer"; version="1.7.0"; sha256="0pvhfc3qyxx6vxww6fx7jx8hb72sl4jna1c3bnyw6z7lvp7a8cxw"; depends=[biomaRt fgsea ggplot2 igraph kernlab STRINGdb yeastExpData]; }; - PREDA = derive2 { name="PREDA"; version="1.27.0"; sha256="15ndnwf3f1cj2h0vrh71gs7xdvy97nncbxrlwk6yisvgndjbdmsb"; depends=[annotate Biobase lokern multtest]; }; + PREDA = derive2 { name="PREDA"; version="1.27.1"; sha256="00wwfvcahrhyxylcg5wjsbv3aqsvw230lcggkk3jrwdyb5x902p2"; depends=[annotate Biobase lokern multtest]; }; PROMISE = derive2 { name="PROMISE"; version="1.33.0"; sha256="1gkbpj9cd5fbrrp2zmffnckynbn81kqyg5wvy2g88spa1zxsx6vp"; depends=[Biobase GSEABase]; }; PROPER = derive2 { name="PROPER"; version="1.13.0"; sha256="1w77rishajj0azrcf0cfsg9is98w1f1w3hfh72rgi7kc93d0k4v0"; depends=[edgeR]; }; PROPS = derive2 { name="PROPS"; version="1.3.0"; sha256="15md6zvsa9ismdwbhlzwxkyj38n4bqv4kpbvxbzg7kb50hc109w6"; depends=[Biobase bnlearn reshape2 sva]; }; PROcess = derive2 { name="PROcess"; version="1.57.0"; sha256="1sb25yfpvq4z6famifk951gwx75dd51srf1khm96psz9k0klxbqg"; depends=[Icens]; }; PSEA = derive2 { name="PSEA"; version="1.15.0"; sha256="1rcz03n4asjajlncppvfhmlnar6f9qzb6m9bg99nmp0gdkjcwa2j"; depends=[Biobase MASS]; }; - PSICQUIC = derive2 { name="PSICQUIC"; version="1.19.0"; sha256="06x6r2js8mxl10yrgmmvzb0na5ydya3ldzxaagh8z21smi154215"; depends=[BiocGenerics biomaRt httr IRanges plyr RCurl]; }; + PSICQUIC = derive2 { name="PSICQUIC"; version="1.19.1"; sha256="0554irz5sxq3vglxq1jlr0fip3hfd41zw5wfd05gn5k0h8s3ff7j"; depends=[BiocGenerics biomaRt httr IRanges plyr RCurl]; }; PWMEnrich = derive2 { name="PWMEnrich"; version="4.17.0"; sha256="1mknim17d0wl7vhn6cffjasisd9nmgs4b3fjz42yjj9y5xqjxwv9"; depends=[BiocGenerics Biostrings evd gdata seqLogo]; }; PanVizGenerator = derive2 { name="PanVizGenerator"; version="1.9.0"; sha256="0x1rzblyy45xdr3hnjbacip7v1pbr54wfc2abldgij9mgc0hmhl9"; depends=[FindMyFriends igraph jsonlite pcaMethods shiny]; }; Path2PPI = derive2 { name="Path2PPI"; version="1.11.0"; sha256="1f6qc6cvsrnhh26lkprjan9fxc1kw4hbb1wbr83rswg0lj8nyg6r"; depends=[igraph]; }; - PathNet = derive2 { name="PathNet"; version="1.21.0"; sha256="1gnzghvj0gf4mcbh099v6c13gqjkalgb3g9fpn2i86fq8h61zplh"; depends=[]; }; - PathoStat = derive2 { name="PathoStat"; version="1.7.2"; sha256="0j5by6yqgiyj17wn036dkb9q3d47ynb4m4w9zkf01d38lqzfp2hr"; depends=[ape BiocStyle ComplexHeatmap corpcor DESeq2 devtools dplyr DT edgeR ggplot2 glmnet gmodels knitr limma matrixStats phyloseq plotly plyr RColorBrewer rentrez reshape2 ROCR scales shiny shinyjs tidyr vegan webshot XML]; }; - PathwaySplice = derive2 { name="PathwaySplice"; version="1.5.0"; sha256="15yc7d84cghmqai4m86bzi3cwidngmn6b680a1ngm6lmfj03bykj"; depends=[annotate AnnotationDbi AnnotationHub BiasedUrn Biobase BiocGenerics DOSE dplyr EnrichmentBrowser ensembldb gdata geneLenDataBase GO_db goseq gplots gridExtra htmlwidgets igraph JunctionSeq KEGGREST mgcv org_Hs_eg_db org_Mm_eg_db plotly RColorBrewer reshape2 S4Vectors tibble VennDiagram webshot]; }; - PharmacoGx = derive2 { name="PharmacoGx"; version="1.11.0"; sha256="0s2gwvp9pdc1qf35apcgscz2xrx5sy1x9kcixy9wjwm4qnhr8cag"; depends=[Biobase caTools downloader lsa magicaxis piano RColorBrewer reshape2]; }; + PathNet = derive2 { name="PathNet"; version="1.21.2"; sha256="1ihd81wwx0w1alzylc2wydg9kx9x3m2hw3zyp8qjhxxjf9pps507"; depends=[]; }; + PathoStat = derive2 { name="PathoStat"; version="1.7.8"; sha256="1lnv8x2im6nw4kckv62cmxi06hjxw3ivj9jyzxi9wc0yylyrbp6j"; depends=[ape BiocStyle ComplexHeatmap corpcor DESeq2 devtools dplyr DT edgeR ggplot2 glmnet gmodels knitr limma matrixStats phyloseq plotly plyr RColorBrewer rentrez reshape2 ROCR scales shiny shinyjs tidyr vegan webshot XML]; }; + PathwaySplice = derive2 { name="PathwaySplice"; version="1.5.2"; sha256="1dj56ssc31yxn3g29485phmjjd9a4nndx455yvvig8p74630149w"; depends=[annotate AnnotationDbi AnnotationHub BiasedUrn Biobase BiocGenerics DOSE dplyr EnrichmentBrowser ensembldb gdata geneLenDataBase GO_db goseq gplots gridExtra htmlwidgets igraph JunctionSeq KEGGREST mgcv org_Hs_eg_db org_Mm_eg_db plotly RColorBrewer reshape2 S4Vectors tibble VennDiagram webshot]; }; + Pbase = derive2 { name="Pbase"; version="0.21.3"; sha256="0945vdb18879j269fd16rac4pmlnqbddp6nn1vkfyprfqv3aqdq8"; depends=[AnnotationFilter Biobase BiocGenerics BiocParallel biomaRt Biostrings cleaver ensembldb GenomicRanges Gviz IRanges MSnbase mzID mzR Pviz Rcpp rtracklayer S4Vectors]; }; + PharmacoGx = derive2 { name="PharmacoGx"; version="1.11.3"; sha256="14dib394xhrdapli5lwrzvf4fmbbgpcrgnbrv80749y9ivmg2jb1"; depends=[Biobase caTools downloader lsa magicaxis piano RColorBrewer reshape2]; }; PhenStat = derive2 { name="PhenStat"; version="2.17.0"; sha256="1fvkaqg1ignyknjgrnj359a5276rrscrkdk9029851rjpyzwypd5"; depends=[car corrplot ggplot2 graph knitr lme4 logistf MASS msgps nlme nortest pingr reshape SmoothWin]; }; - Pi = derive2 { name="Pi"; version="1.9.0"; sha256="1bdr53dxz2sfmm7n4214m5mqp47l8ipsm562mhs1pybqfawfwfff"; depends=[caret dnet GenomeInfoDb GenomicRanges ggbio ggplot2 ggrepel glmnet Gviz igraph lattice MASS Matrix plot3D randomForest ROCR scales supraHex XGR]; }; - Pigengene = derive2 { name="Pigengene"; version="1.7.4"; sha256="072bzpimq9135r4s7sfxgw8sb6h0fgygay9fvlbldfcql8amx7kp"; depends=[bnlearn C50 GO_db graph impute MASS matrixStats partykit pheatmap preprocessCore Rgraphviz WGCNA]; }; + Pi = derive2 { name="Pi"; version="1.9.3"; sha256="0h3a40bhj2410w8ibfbfp2nl76c5anh62pva8phf6y2g4bxvhi9p"; depends=[caret dnet GenomeInfoDb GenomicRanges ggbio ggplot2 ggrepel glmnet Gviz igraph lattice MASS Matrix plot3D randomForest ROCR scales supraHex XGR]; }; + Pigengene = derive2 { name="Pigengene"; version="1.7.8"; sha256="0spdvc7wl8y7nsvyfrzni666wpbi8021ff2nlc4f6chhx6zqvg2i"; depends=[bnlearn C50 GO_db graph impute MASS matrixStats partykit pheatmap preprocessCore Rgraphviz WGCNA]; }; Polyfit = derive2 { name="Polyfit"; version="1.15.0"; sha256="0k3apzd7szmglba2s51grmp4lbvv2wmv6kvv43mvbvrvc59cyxq5"; depends=[DESeq]; }; PowerExplorer = derive2 { name="PowerExplorer"; version="1.1.1"; sha256="06igcls1khn3dvajp7289v4ax6yr5cgg0da0d81dkr38cb6lwnpx"; depends=[Biobase BiocParallel data_table DESeq2 ggplot2 gridExtra MASS ROTS S4Vectors SummarizedExperiment vsn]; }; Prize = derive2 { name="Prize"; version="1.11.0"; sha256="0fk26mk97l3jdj9n20ha7m8gcfxc20w4c9c5xshnphfij56brrr5"; depends=[diagram ggplot2 gplots matrixcalc reshape2 stringr]; }; ProCoNA = derive2 { name="ProCoNA"; version="1.19.0"; sha256="1648ly7mpqfhj1phnvwrkzsj31wdk5ddg7cc073kbwwgmz859r0d"; depends=[BiocGenerics flashClust GOstats MSnbase WGCNA]; }; - Prostar = derive2 { name="Prostar"; version="1.13.0"; sha256="01k76vh9z15ya8cjymwmpcl0z79q3fqpz2m5yvvsy21ijw2vd004"; depends=[DAPAR DAPARdata data_table DT highcharter htmlwidgets R_utils rhandsontable shiny shinyAce shinyBS shinyjs webshot]; }; + Prostar = derive2 { name="Prostar"; version="1.13.16"; sha256="0kfqzibwkwbggjs5isgf9s1nk3zssahcicf9vpr3s2rkkmn18y8j"; depends=[BiocManager colourpicker DAPAR DAPARdata data_table DT future highcharter htmlwidgets later promises R_utils rclipboard rhandsontable shiny shinyAce shinyBS shinycssloaders shinyjqui shinyjs shinythemes shinyTree shinyWidgets webshot XML]; }; ProtGenerics = derive2 { name="ProtGenerics"; version="1.13.0"; sha256="0mcdiy93c01ki2zfv90a5q00hss8i4mds4gw6n6gp32f40ap7h2j"; depends=[]; }; - ProteomicsAnnotationHubData = derive2 { name="ProteomicsAnnotationHubData"; version="1.11.0"; sha256="01279ybid6k8l8w564rpx7jd1487dafxkmgfzvg0964z930i7qsm"; depends=[AnnotationHub AnnotationHubData Biobase BiocInstaller Biostrings GenomeInfoDb MSnbase mzR RCurl]; }; - PureCN = derive2 { name="PureCN"; version="1.11.11"; sha256="1n2ikzcyxw8rfbid2bgg6fnn3nlfwgmjw73f9y06hyci0m2qpc8n"; depends=[BiocGenerics Biostrings data_table DNAcopy futile_logger GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gridExtra IRanges Matrix RColorBrewer rhdf5 Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation VGAM]; }; + ProteoMM = derive2 { name="ProteoMM"; version="0.99.8"; sha256="0j9sjj7r6jbgwv2vfsgd61xk5sd6rlw6ns5j0qvpcry6a5a26z3s"; depends=[biomaRt gdata ggplot2 ggrepel gtools matrixStats]; }; + ProteomicsAnnotationHubData = derive2 { name="ProteomicsAnnotationHubData"; version="1.11.1"; sha256="1zlwsfk1f0pc6diqmd5r6cfxz48zz1m1hxagly7rw3v52qmjqynh"; depends=[AnnotationHub AnnotationHubData Biobase BiocManager Biostrings GenomeInfoDb MSnbase mzR RCurl]; }; + PureCN = derive2 { name="PureCN"; version="1.11.20"; sha256="0nznlpqpj1lrxn0lymq5xksn8zs6hda4jmq57mks9nj8ilq1sw0r"; depends=[BiocGenerics Biostrings data_table DNAcopy futile_logger GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gridExtra IRanges Matrix RColorBrewer rhdf5 Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation VGAM]; }; Pviz = derive2 { name="Pviz"; version="1.15.0"; sha256="08kkrhxmy60lkvmjwpkv3nv7w8mybv5465923a9hghzs291qjvn4"; depends=[Biostrings biovizBase data_table GenomicRanges Gviz IRanges]; }; QDNAseq = derive2 { name="QDNAseq"; version="1.17.0"; sha256="113s3ir4dxhxxpfy700hp2lgvx6qgzy1nbqin0g3fz7z0y50m2ns"; depends=[Biobase BiocParallel CGHbase CGHcall DNAcopy GenomicRanges IRanges matrixStats R_utils Rsamtools]; }; + QSutils = derive2 { name="QSutils"; version="0.99.8"; sha256="03840r3xw83gd1k56p66qang26g26gilrddfdnjjilpkcshmbksd"; depends=[ape BiocGenerics Biostrings psych]; }; QUALIFIER = derive2 { name="QUALIFIER"; version="1.25.1"; sha256="1acaga0zc3vnjmr15xmyd05xp2cdwh96armg47qbpb4kygfh433g"; depends=[Biobase data_table flowCore flowViz flowWorkspace hwriter lattice latticeExtra MASS ncdfFlow reshape XML]; }; - QUBIC = derive2 { name="QUBIC"; version="1.9.0"; sha256="1kayxj3msc171x6glgvqpqygrigf8x0knknk7ci7fmbg6haf44jf"; depends=[biclust Matrix Rcpp RcppArmadillo]; }; - QuartPAC = derive2 { name="QuartPAC"; version="1.13.0"; sha256="0mxq3nn5lqfqk8lpg1pys724pvviqz1fkhbnp5zlszvyhikmic9q"; depends=[data_table GraphPAC iPAC SpacePAC]; }; - QuasR = derive2 { name="QuasR"; version="1.21.0"; sha256="1q3h4dg95wqmfkbrp5rvyp7qazafcgwc4chhw7rlwdbvic080g63"; depends=[Biobase BiocGenerics BiocInstaller BiocParallel Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicRanges IRanges Rbowtie Rsamtools rtracklayer S4Vectors ShortRead zlibbioc]; }; - QuaternaryProd = derive2 { name="QuaternaryProd"; version="1.15.0"; sha256="0b0qxsqf3g42k68d22w22n8y5yjvhx4jfkwpaxg38z5i8404n03k"; depends=[dplyr Rcpp yaml]; }; - R3CPET = derive2 { name="R3CPET"; version="1.13.0"; sha256="0viqypiwmrhi08islj8lg2byhvhfblwjj340ms2a7wf8zbyl439l"; depends=[BiocGenerics clues clValid data_table GenomeInfoDb GenomicRanges ggbio ggplot2 Hmisc igraph IRanges pheatmap Rcpp RCurl reshape2 S4Vectors]; }; + QUBIC = derive2 { name="QUBIC"; version="1.9.1"; sha256="0akvph9v1rqiq5a4ygi3wcpi82n4py59fdwvzbphnkd1wpva61wn"; depends=[biclust Matrix Rcpp RcppArmadillo]; }; + QuartPAC = derive2 { name="QuartPAC"; version="1.13.1"; sha256="105jl05hai0jiy240618zbb861d7ya0x51hds6h9af189jgc98jz"; depends=[data_table GraphPAC iPAC SpacePAC]; }; + QuasR = derive2 { name="QuasR"; version="1.21.2"; sha256="1wz8mq86ffws24akwf0idvq3s2ys8dgwcm47ajv59589x75a9qwv"; depends=[Biobase BiocGenerics BiocManager BiocParallel Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicRanges IRanges Rbowtie Rsamtools rtracklayer S4Vectors ShortRead zlibbioc]; }; + QuaternaryProd = derive2 { name="QuaternaryProd"; version="1.15.3"; sha256="0k3a64j3zkvqqg04hlx94iiw5g2hndnl99m2bbn6asjx3vyjj237"; depends=[dplyr Rcpp yaml]; }; + R3CPET = derive2 { name="R3CPET"; version="1.13.1"; sha256="182h5zgq496lg284ncjk5qrqfnzab2cs8lkjrrxf4yzvf8h38bgl"; depends=[BiocGenerics clues clValid data_table GenomeInfoDb GenomicRanges ggbio ggplot2 Hmisc igraph IRanges pheatmap Rcpp RCurl reshape2 S4Vectors]; }; R453Plus1Toolbox = derive2 { name="R453Plus1Toolbox"; version="1.31.0"; sha256="16cri94hg585804xaq5gfbs9nn62nhmcayapvwpb2y7vs855g4qx"; depends=[Biobase BiocGenerics biomaRt Biostrings BSgenome GenomicRanges IRanges R2HTML Rsamtools S4Vectors ShortRead SummarizedExperiment TeachingDemos VariantAnnotation xtable XVector]; }; R4RNA = derive2 { name="R4RNA"; version="1.9.0"; sha256="08jrmdcdwk9dzk38sjc6rxn4nf3s5lg6x9w540drhiynd3jw9nxw"; depends=[Biostrings]; }; RBGL = derive2 { name="RBGL"; version="1.57.0"; sha256="0bm2wfsi3himissj2x1v16rgrz3j2wz9s1kisaxxpgv27a4bvp0i"; depends=[graph]; }; - RBM = derive2 { name="RBM"; version="1.13.0"; sha256="0ssl53wbzakkggx2jlzy378jnw13w116dxs3wnzmdaywa5nqbamr"; depends=[limma marray]; }; + RBM = derive2 { name="RBM"; version="1.13.1"; sha256="1yc0cqw84b5bzwnp85x50q3ibq7zr3awnc0ndrf05q38jbqrgskc"; depends=[limma marray]; }; RBioinf = derive2 { name="RBioinf"; version="1.41.0"; sha256="1bi7dx51nhq7y2s0395hncbfbwfhdixwwn5n238f6fq6sxg95v1h"; depends=[graph]; }; - RCAS = derive2 { name="RCAS"; version="1.7.0"; sha256="14s4f6lfy31vv791h8yasc4b3883r0ksjab9wrsw8w8381ac2323"; depends=[AnnotationDbi BiocGenerics biomaRt Biostrings BSgenome_Hsapiens_UCSC_hg19 cowplot data_table DBI DT genomation GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggseqlogo knitr motifRG org_Hs_eg_db pbapply pheatmap plotly plotrix proxy rmarkdown RSQLite rtracklayer S4Vectors topGO]; }; + RCAS = derive2 { name="RCAS"; version="1.7.3"; sha256="1k8frzidrg88j0mzbhn4njm2jfgxi5lv91yszarl43fhl19zrdl2"; depends=[AnnotationDbi BiocGenerics biomaRt Biostrings BSgenome_Hsapiens_UCSC_hg19 cowplot data_table DBI DT genomation GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggseqlogo knitr motifRG org_Hs_eg_db pbapply pheatmap plotly plotrix proxy rmarkdown RSQLite rtracklayer S4Vectors topGO]; }; RCASPAR = derive2 { name="RCASPAR"; version="1.27.0"; sha256="00r0p6hzzjsgpwc0ja6ws2sn7fp5qzlcajvwq3l5zd99zcn3lds8"; depends=[]; }; - RCy3 = derive2 { name="RCy3"; version="2.1.13"; sha256="1kp2hgh2kid9xy8w97wkwc3759sxz7lp6inamsflff5a12ffd41c"; depends=[BiocGenerics graph httr igraph RJSONIO XML]; }; - RCyjs = derive2 { name="RCyjs"; version="2.3.6"; sha256="1gbqpf9ljvlhl8zmd39d7fifn67sv6gmfvryfk9yf0y53x9l95sc"; depends=[base64enc BiocGenerics BrowserViz graph httpuv]; }; + RCy3 = derive2 { name="RCy3"; version="2.1.26"; sha256="0j8ynimcgr0jbnlfib17vr4zjf3k5j5159aq1v8y3dxcx21hqh0d"; depends=[BiocGenerics graph httr igraph RJSONIO XML]; }; + RCyjs = derive2 { name="RCyjs"; version="2.3.11"; sha256="1q74r04h169mix224jcahh8mir17dc1ifasfcgjir9szw3gh97lv"; depends=[base64enc BiocGenerics BrowserViz graph httpuv]; }; RDAVIDWebService = derive2 { name="RDAVIDWebService"; version="1.19.0"; sha256="0in7bnx1v9z9z55b88hmix8fgrjysbzjxp0c53psq3k7fm46yxg7"; depends=[Category ggplot2 GO_db GOstats graph RBGL rJava]; }; RDRToolbox = derive2 { name="RDRToolbox"; version="1.31.0"; sha256="0zm1319g4b0jfqi7ix7insqadilccmlcc1bnwf4hwgw1d2bsby1p"; depends=[MASS rgl]; }; + REBET = derive2 { name="REBET"; version="0.99.6"; sha256="1q8ksqv13rnk2rv0xs1cfkskp8j701pi231b5m14s41gxq85f689"; depends=[ASSET]; }; REDseq = derive2 { name="REDseq"; version="1.27.0"; sha256="0s1v5qlbzz54pck44vy0bzhkm0ga7wa01nrr4x1fbswxbkz80djy"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome BSgenome_Celegans_UCSC_ce2 ChIPpeakAnno IRanges multtest]; }; - REMP = derive2 { name="REMP"; version="1.5.0"; sha256="0gr7x6l9z871p41w32q8dqz2jaglvz51d7zrrwxy55iidbnqw5jv"; depends=[AnnotationHub BiocGenerics BiocParallel Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 caret doParallel foreach GenomicRanges IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b2_hg19 impute IRanges iterators kernlab minfi org_Hs_eg_db ranger S4Vectors settings SummarizedExperiment]; }; + REMP = derive2 { name="REMP"; version="1.5.2"; sha256="04jg8c2x1k3wbf1gr8ncdgy4z09r2zk1fhbxpgz8cv2hngdpwhfi"; depends=[AnnotationHub BiocGenerics BiocParallel Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 caret doParallel foreach GenomicRanges IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b2_hg19 impute IRanges iterators kernlab minfi org_Hs_eg_db ranger S4Vectors settings SummarizedExperiment]; }; RGMQL = derive2 { name="RGMQL"; version="1.1.0"; sha256="1z7dj3lmw40b08x33bl9fb4asr22syn0cinl12ya60nawh5rlxsi"; depends=[BiocGenerics data_table dplyr GenomicRanges glue httr plyr RGMQLlib rJava rtracklayer S4Vectors xml2]; }; RGSEA = derive2 { name="RGSEA"; version="1.15.0"; sha256="1c0i33lz0cl983dk520g2caf0844jknd39h71fy6kynknqxmnqqs"; depends=[BiocGenerics]; }; RGalaxy = derive2 { name="RGalaxy"; version="1.25.0"; sha256="04xs1w3yndlrdbac2ybzhdk8fdbg95a3qmjjqyykhfl5mck97d97"; depends=[Biobase BiocGenerics optparse roxygen2 XML]; }; RGraph2js = derive2 { name="RGraph2js"; version="1.9.0"; sha256="0y7fnysz9rljyrk4gs1r29zgxzzcpwk3jayv6km20l6abxzbfccr"; depends=[digest graph rjson whisker]; }; - RIPSeeker = derive2 { name="RIPSeeker"; version="1.21.0"; sha256="02m401h56lb88qcfbidfxvh5nxls465y68jgjcfv7sd4x83ykd7z"; depends=[GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; - RITAN = derive2 { name="RITAN"; version="1.5.2"; sha256="0nfnrh4w3y33rygdl07ydvxzl05nnysl3zlsg9nf459w98y4s7xg"; depends=[BgeeDB dynamicTreeCut ggplot2 gplots gridExtra gsubfn hash igraph knitr linkcomm MCL plotrix png ProNet RColorBrewer reshape2 RITANdata sqldf STRINGdb]; }; - RIVER = derive2 { name="RIVER"; version="1.5.0"; sha256="1fdav14pba08a1hyqh82yad1ynvbzbc9i5gn5gxiypa833s5v31h"; depends=[Biobase ggplot2 glmnet pROC]; }; + RIPSeeker = derive2 { name="RIPSeeker"; version="1.21.1"; sha256="0vxllhd0pyq1a3z0gqpiv5llyb18qi8ph6h8jmqbjsknba243j30"; depends=[GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; + RITAN = derive2 { name="RITAN"; version="1.5.5"; sha256="0p2dpn6zas3wndzr9dbs1l97s5w7qzj0y7db7796jysd3mlzlvz1"; depends=[BgeeDB dynamicTreeCut ggplot2 gplots gridExtra gsubfn hash igraph knitr linkcomm MCL plotrix png RColorBrewer reshape2 RITANdata sqldf STRINGdb]; }; + RIVER = derive2 { name="RIVER"; version="1.5.1"; sha256="1c7li0kihq3rxqv7ykz12accyqpiwwvjdlma137mfh5dhpjlx5cr"; depends=[Biobase ggplot2 glmnet pROC]; }; RImmPort = derive2 { name="RImmPort"; version="1.9.0"; sha256="0amhihh6g8j817xr05bqcp9sx564gp0jlg34iinmjqzizksflv1g"; depends=[data_table DBI dplyr plyr reshape2 RSQLite sqldf]; }; RJMCMCNucleosomes = derive2 { name="RJMCMCNucleosomes"; version="1.5.0"; sha256="008nmql2f1qw246bj50w38kabcfw2bvgqb086ch9h9cv4b976dwi"; depends=[BiocGenerics BiocParallel consensusSeekeR GenomeInfoDb GenomicRanges IRanges Rcpp S4Vectors]; }; RLMM = derive2 { name="RLMM"; version="1.43.0"; sha256="1hfr0w56jai1v3x0b6w4z5y00yf8j2aa2yhcd994lj48klwgjacp"; depends=[MASS]; }; + RMassBank = derive2 { name="RMassBank"; version="2.9.2"; sha256="0yvbd1425ygp3xmn1danhbx5865cyl2h340yscs4r6g9whciw1vn"; depends=[Biobase digest httr MSnbase mzR rcdk Rcpp RCurl rjson S4Vectors XML yaml]; }; RNASeqPower = derive2 { name="RNASeqPower"; version="1.21.0"; sha256="0gd3mbish7k4zwfv4kadcnifwm485p7zizvdj8pk1ns1fl5cwpbz"; depends=[]; }; - RNAdecay = derive2 { name="RNAdecay"; version="1.1.1"; sha256="1xnj3q52biy8rzpyvd7b77sszsvs01sxkkkkkz0waqi61q58rhvv"; depends=[ggplot2 gplots nloptr TMB]; }; - RNAinteract = derive2 { name="RNAinteract"; version="1.29.0"; sha256="03xizq9h93ii1jwjbk6kcmh71fc882qk9fnv3hbl15a9d8yvzpnv"; depends=[abind Biobase cellHTS2 geneplotter gplots hwriter ICS ICSNP lattice latticeExtra limma locfit RColorBrewer splots]; }; + RNASeqR = derive2 { name="RNASeqR"; version="0.99.25"; sha256="03mka6s8s064agyrvl3xzdds1dr03jimgcqgnisr61ypdy9lyih0"; depends=[ballgown Biostrings clusterProfiler corrplot DESeq2 DOSE edgeR factoextra FactoMineR ggplot2 gridExtra org_Hs_eg_db org_Sc_sgd_db pathview PerformanceAnalytics pheatmap rafalib reshape2 reticulate Rsamtools stringr systemPipeR systemPipeRdata]; }; + RNAdecay = derive2 { name="RNAdecay"; version="1.1.2"; sha256="09z07f5x0h19dbk47lwmp9h9ijvmdznr8hxxyihazqvr66qb5ghn"; depends=[ggplot2 gplots nloptr TMB]; }; + RNAinteract = derive2 { name="RNAinteract"; version="1.29.1"; sha256="1wq1b3z8yqslw4l4103x28lv063m5f1wi1dr43q9h345gcb4kyvs"; depends=[abind Biobase cellHTS2 geneplotter gplots hwriter ICS ICSNP lattice latticeExtra limma locfit RColorBrewer splots]; }; RNAither = derive2 { name="RNAither"; version="2.29.0"; sha256="0w90awkmdi2h6q2hpvl6i5qbkdggbpvac1cbxx2995hmx8lc6pwa"; depends=[biomaRt car geneplotter limma prada RankProd splots topGO]; }; RNAprobR = derive2 { name="RNAprobR"; version="1.13.0"; sha256="0hjhk0ap6n17ccjkjfxq8c8cfg166gcwbapmwixac4dqwqg5k997"; depends=[BiocGenerics Biostrings GenomicAlignments GenomicFeatures GenomicRanges IRanges plyr Rsamtools rtracklayer S4Vectors]; }; ROC = derive2 { name="ROC"; version="1.57.0"; sha256="1glip25d37gz13b2c4zpk1vm34kvfxvgbsz302ww0g8wqq3cc0i5"; depends=[]; }; ROTS = derive2 { name="ROTS"; version="1.9.1"; sha256="061z3cnwaz5fgbpikg6vqazp1bqsxp7ln8krn3i1fz20k4ny800z"; depends=[Biobase Rcpp]; }; ROntoTools = derive2 { name="ROntoTools"; version="2.9.0"; sha256="1ivsr52qf9sz08zpp1vbvwyqpsfd55m4jj8g62mb5khkmrf8mnwl"; depends=[boot graph KEGGgraph KEGGREST Rgraphviz]; }; - RPA = derive2 { name="RPA"; version="1.37.0"; sha256="0cm2sfv6pkrxjq8xnby2hsnda687bdlc63b3i96fmhzjldfwnixf"; depends=[affy BiocGenerics phyloseq]; }; - RProtoBufLib = derive2 { name="RProtoBufLib"; version="1.3.0"; sha256="1ji9m1x9l84iwdw1bd2bhbvdfwn3jnw80inc6xnc6vp4k64zll4m"; depends=[]; }; + RPA = derive2 { name="RPA"; version="1.37.2"; sha256="16yr6qp6wcdrb4zpyrs30zv0q4zb74s04fzpddk6c7v1phmakk0a"; depends=[affy BiocGenerics phyloseq]; }; + RProtoBufLib = derive2 { name="RProtoBufLib"; version="1.3.7"; sha256="0f68ziylg1pp3wakxr08i6hlhf3grnvfmsr7fc1v1phsz8amg676"; depends=[]; }; RRHO = derive2 { name="RRHO"; version="1.21.0"; sha256="00wy53vmfdzfv56ib277cl7rnv2l6klyixyjq93whmzr39d8mbwi"; depends=[VennDiagram]; }; RSVSim = derive2 { name="RSVSim"; version="1.21.0"; sha256="0l7wq0cvws0n78xp14rwagrjhm3pxzf2jg3k1w5pv6w778mhm9dw"; depends=[Biostrings GenomicRanges IRanges ShortRead]; }; RSeqAn = derive2 { name="RSeqAn"; version="1.1.0"; sha256="186qcffr5f1g5x5didd8gkhfdl9wxdivqjwxbcn001i3k71h11mm"; depends=[]; }; RTCA = derive2 { name="RTCA"; version="1.33.0"; sha256="0wyvn004xjxgr80ar5a0bcc6jpz9ksi03is8yc8ijsdlssk9cs71"; depends=[Biobase gtools RColorBrewer]; }; - RTCGA = derive2 { name="RTCGA"; version="1.11.0"; sha256="1r5qxbbw420cq2a648ispxwlswv5xpi9r4r89r7d7cgaw1k1n0h5"; depends=[assertthat data_table dplyr ggplot2 ggthemes knitr purrr rvest scales stringi survival survminer viridis XML xml2]; }; - RTCGAToolbox = derive2 { name="RTCGAToolbox"; version="2.11.1"; sha256="0ajrz01aqqs30m5dq6x0l2gn49vhbi4k9ppyzgdy0ljpvx95c8hb"; depends=[Biobase BiocGenerics data_table GenomeInfoDb GenomicRanges httr IRanges limma plyr RaggedExperiment RCircos RCurl RJSONIO S4Vectors stringr SummarizedExperiment survival TCGAutils XML]; }; - RTN = derive2 { name="RTN"; version="2.5.1"; sha256="1gwvqqjky6cgq4sdj8myjqrywdx7a44wnvb20l47qlqamlr41905"; depends=[car data_table igraph IRanges limma minet RedeR S4Vectors snow]; }; - RTNduals = derive2 { name="RTNduals"; version="1.5.1"; sha256="17vp27lxjh3v0y2s1d96xk2y3wxwj2lh40c5z7lqh6qx89lyhirz"; depends=[RTN]; }; - RTNsurvival = derive2 { name="RTNsurvival"; version="1.5.0"; sha256="0fyks8lvxqdli3wm0z0py6vn5y3mfpvi95mqb7hycafc2812am68"; depends=[png RColorBrewer RTN RTNduals survival]; }; + RTCGA = derive2 { name="RTCGA"; version="1.11.3"; sha256="1r0c2lj73brq174lfnxlwvjz34wckf2kd5hkzmymwv6vgy83j98q"; depends=[assertthat data_table dplyr ggplot2 ggthemes knitr purrr rvest scales stringi survival survminer viridis XML xml2]; }; + RTCGAToolbox = derive2 { name="RTCGAToolbox"; version="2.11.8"; sha256="0sb5n88vbx24dfn66i4xd71c8kswsgwd14zky172lrjhplb1lkwm"; depends=[BiocGenerics data_table DelayedArray GenomeInfoDb GenomicRanges IRanges limma RaggedExperiment RCircos RCurl RJSONIO S4Vectors stringr SummarizedExperiment survival TCGAutils XML]; }; + RTN = derive2 { name="RTN"; version="2.5.6"; sha256="01r5hv1xc3znllqknc06x8zs9nxs2d9y2fxi8mv8ggxplaw05mwz"; depends=[data_table igraph IRanges limma minet mixtools RedeR S4Vectors snow viper]; }; + RTNduals = derive2 { name="RTNduals"; version="1.5.4"; sha256="1kjx590l4q2g9khph4xfkj2nqnq9aycyy16havv2ll4i48k4j4i7"; depends=[RTN]; }; + RTNsurvival = derive2 { name="RTNsurvival"; version="1.5.4"; sha256="0gn6s0lpxag113v1smh20k1w0yyhpr2wp4i0hvihxlqascmrp73j"; depends=[RColorBrewer RTN RTNduals scales survival viper]; }; RTopper = derive2 { name="RTopper"; version="1.27.0"; sha256="1d2bnvjlwgrahxjd1x6gzdhz70wyd990iq9204kc072qyi40l2yz"; depends=[Biobase limma multtest]; }; - RUVSeq = derive2 { name="RUVSeq"; version="1.15.0"; sha256="1dnjshlpalfnrgk9dmig5k1bnshpk4ifp3bvh1cp1z55yihmw111"; depends=[Biobase EDASeq edgeR MASS]; }; + RUVSeq = derive2 { name="RUVSeq"; version="1.15.1"; sha256="0j60afjrnbi8x00nw5y0l8m2j7i4n1aq31k8swxinsniawhidbvn"; depends=[Biobase EDASeq edgeR MASS]; }; RUVcorr = derive2 { name="RUVcorr"; version="1.13.0"; sha256="0cfq69vvajn2s8gyrr4g9vzf8l8wp7p6hg6jlfffv2kfn3yhd05g"; depends=[BiocParallel bladderbatch corrplot gridExtra lattice MASS psych reshape2 snowfall]; }; RUVnormalize = derive2 { name="RUVnormalize"; version="1.15.0"; sha256="02v5kj8hbzgcckqq671zypfkf460j3rxiqxh4w5izp9bxqdv9g3g"; depends=[Biobase RUVnormalizeData]; }; - RVS = derive2 { name="RVS"; version="1.3.0"; sha256="0y98yaj5lvlc4104nqjhk7g00f1zqaqsig3mdf7hvwqhlwdsyh0l"; depends=[gRain kinship2 snpStats]; }; - RaggedExperiment = derive2 { name="RaggedExperiment"; version="1.5.2"; sha256="157sfaz4s6wpvccn4s7w0j0iv69zqzf8vxpamp4kdzdhg9ky7byw"; depends=[BiocGenerics GenomicRanges IRanges S4Vectors SummarizedExperiment]; }; - RandomWalkRestartMH = derive2 { name="RandomWalkRestartMH"; version="1.1.0"; sha256="1kzxl773z4619lvznxv67yb7k2lfjn3bfgfssgql0adrjfm8qi1a"; depends=[dnet igraph Matrix]; }; + RVS = derive2 { name="RVS"; version="1.3.1"; sha256="02y68m30aqmcyf1bv0aicrijdx87gzaa9a5f2dlfjfd6jgk2ijn9"; depends=[gRain kinship2 snpStats]; }; + RaggedExperiment = derive2 { name="RaggedExperiment"; version="1.5.7"; sha256="1wvczzqhsgdj0f6a2v7ls4c51vm9wik10wnlkxsw06h3xz6c3xmf"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges S4Vectors SummarizedExperiment]; }; + RandomWalkRestartMH = derive2 { name="RandomWalkRestartMH"; version="1.1.1"; sha256="0p9qvbsmxvca615h6pk51n8dm21265bmciix3ddnhljq1c6lgc7x"; depends=[dnet igraph Matrix]; }; RankProd = derive2 { name="RankProd"; version="3.7.0"; sha256="1zqawks6i567dk4ylnyh0jddnp62nqygshv4ihy39xhjab4j04wx"; depends=[gmp Rmpfr]; }; RareVariantVis = derive2 { name="RareVariantVis"; version="2.9.0"; sha256="1466zh50n0f1apkbd38lp84r8byras0pna5bm49bc7i7s9agkp14"; depends=[BiocGenerics BSgenome BSgenome_Hsapiens_UCSC_hg19 GenomeInfoDb GenomicFeatures GenomicRanges GenomicScores googleVis gtools IRanges phastCons100way_UCSC_hg19 S4Vectors SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation]; }; Rariant = derive2 { name="Rariant"; version="1.17.0"; sha256="0nm0k2d1bhqsk9gir38gd0py6xn5wk0b985kpix8ghi64mypmqmr"; depends=[BiocGenerics dplyr exomeCopy GenomeInfoDb GenomicRanges ggbio ggplot2 IRanges reshape2 Rsamtools S4Vectors shiny SomaticSignatures VariantAnnotation VGAM]; }; RbcBook1 = derive2 { name="RbcBook1"; version="1.49.0"; sha256="1ar8jl97fillw0g7kf09mxkr9215dw3jmw2b6qaq9pch7qg8qnr7"; depends=[Biobase graph rpart]; }; - Rbowtie = derive2 { name="Rbowtie"; version="1.21.0"; sha256="05ql92h3s7ppsf5fdrsqbhsn9snwhf168yr78n7qhafw9p6ry77j"; depends=[]; }; - Rbowtie2 = derive2 { name="Rbowtie2"; version="1.3.0"; sha256="02cf3hn9nb10583fwxqzb8iygsm5xzmxhk4y0iadyvxi6nsz6lbk"; depends=[]; }; + Rbowtie = derive2 { name="Rbowtie"; version="1.21.2"; sha256="1l5mllfa4kfdrf65xmssd3wpfvqnl9p0lajg2fz1hl98xwm7yl31"; depends=[]; }; + Rbowtie2 = derive2 { name="Rbowtie2"; version="1.3.1"; sha256="1ss2i77lq3fazv6ipv543cfizchp9gh566d7xbjkggh1a0vcm1db"; depends=[]; }; Rcade = derive2 { name="Rcade"; version="1.23.0"; sha256="0d6cyn6b06g0qkps2d7b65p7pa7bz6iv71lv4hbzmdc581azg4fq"; depends=[baySeq GenomeInfoDb GenomicAlignments GenomicRanges IRanges plotrix rgl Rsamtools S4Vectors]; }; Rchemcpp = derive2 { name="Rchemcpp"; version="2.19.0"; sha256="17kz0ld7hnrvdv69hz3kj3mhv2f4qms9i65lrwam63g0aydfzyrx"; depends=[ChemmineR Rcpp]; }; RchyOptimyx = derive2 { name="RchyOptimyx"; version="2.21.0"; sha256="0fzmw1kxnaqmk5h61r2dkwq0xp8ir7gg7kq2wkhyvpd68hr3ir3d"; depends=[flowType graph Rgraphviz sfsmisc]; }; - RcisTarget = derive2 { name="RcisTarget"; version="1.1.2"; sha256="1a909bnc96bhn1jd8yk1d68f9x49lbd6wgbmwqxq1k1iqh8qj2hs"; depends=[AUCell BiocGenerics data_table feather GSEABase R_utils SummarizedExperiment]; }; - Rcpi = derive2 { name="Rcpi"; version="1.17.0"; sha256="0a6cs6bvnzx9cp5y4m3h9in0bhq78iy50p48p59k6qqzkvldgcqy"; depends=[Biostrings ChemmineR doParallel fmcsR foreach GOSemSim rcdk RCurl rjson]; }; + RcisTarget = derive2 { name="RcisTarget"; version="1.1.3"; sha256="09zkvl5hwcds9w5n5h51zgpilmygljmar3fqd5wihr8dd6bj1qnk"; depends=[AUCell BiocGenerics data_table feather GSEABase R_utils SummarizedExperiment]; }; + Rcpi = derive2 { name="Rcpi"; version="1.17.2"; sha256="1d77jnlw2jsg8f2ij7ax8ngwb99bngiq0vvdpx2q5nmhkzn9w5vq"; depends=[Biostrings ChemmineR doParallel fmcsR foreach GOSemSim rcdk RCurl rjson]; }; Rdisop = derive2 { name="Rdisop"; version="1.41.0"; sha256="038bgrf5bcdwy8bji5wprq55ypajwp68lqv1i24bk6hikfm2g7p9"; depends=[Rcpp RcppClassic]; }; ReQON = derive2 { name="ReQON"; version="1.27.0"; sha256="1dvsnbsl5ljwfirn61rbcxvrdy74qv96xbs4d8x1wmkfs2bsm2gy"; depends=[rJava Rsamtools seqbias]; }; - ReactomePA = derive2 { name="ReactomePA"; version="1.25.0"; sha256="0hrprjkzg6mdsyqyxgzpscfvgm0335j2avv96a9n70w7rj1zx3ym"; depends=[AnnotationDbi DOSE enrichplot ggplot2 ggraph graphite igraph reactome_db]; }; - ReadqPCR = derive2 { name="ReadqPCR"; version="1.27.0"; sha256="0qbfx6kj6bk60wilbnp49inairhhsi1638i5hhfd1w8365mmzalq"; depends=[affy Biobase]; }; + ReactomePA = derive2 { name="ReactomePA"; version="1.25.1"; sha256="1kqhm5n1g8r1rci0n1135pcka2x0p8h565m609bfljiqnmgaza9v"; depends=[AnnotationDbi DOSE enrichplot ggplot2 ggraph graphite igraph reactome_db]; }; + ReadqPCR = derive2 { name="ReadqPCR"; version="1.27.2"; sha256="1mbaqp0xj0ncdja7rgb84j54bv1vricsabnfj6d8v55yrp1jp7p6"; depends=[Biobase]; }; RedeR = derive2 { name="RedeR"; version="1.29.0"; sha256="00j3yr07qg363ghbgv76ydyar0jp48zdfw5pdpxnv13mzm48wa4r"; depends=[igraph]; }; RefNet = derive2 { name="RefNet"; version="1.17.0"; sha256="0lcbg131gxkvsvmbwj4gpqdpfqjik91jmyd2g745yb7rayly252g"; depends=[AnnotationHub BiocGenerics IRanges PSICQUIC RCurl shiny]; }; RefPlus = derive2 { name="RefPlus"; version="1.51.0"; sha256="0wq0l2883ns2sl8ia5qdx6wn9227lxaz7m0g3lqmr36xkflc1ka1"; depends=[affy affyPLM Biobase preprocessCore]; }; Repitools = derive2 { name="Repitools"; version="1.27.0"; sha256="1anh3fn4wyn69838y7jr5h6bhi8m7d7r1n68rbqvsvbr4bik54vr"; depends=[aroma_affymetrix BiocGenerics Biostrings BSgenome cluster DNAcopy edgeR GenomeInfoDb GenomicAlignments GenomicRanges gplots gsmoothr IRanges MASS Ringo Rsamtools Rsolnp rtracklayer S4Vectors]; }; ReportingTools = derive2 { name="ReportingTools"; version="2.21.1"; sha256="0rdndxizkbx8bdjcx82x59y326ypsxrlmzyrgkgkmm3hgq041n97"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category DESeq2 edgeR ggbio ggplot2 GOstats GSEABase hwriter IRanges knitr lattice limma PFAM_db R_utils XML]; }; Rgin = derive2 { name="Rgin"; version="1.1.0"; sha256="1yqif2dpw0c3p4kg8pni80ggh3f6430nd7k3k0fxirz74ljv642h"; depends=[RcppEigen]; }; - Rgraphviz = derive2 { name="Rgraphviz"; version="2.25.0"; sha256="06kvi85d2wgm2v9pvxn9swrvi4cavww5idcc7gx4d80w4kwzhx5f"; depends=[graph]; }; - Rhdf5lib = derive2 { name="Rhdf5lib"; version="1.3.1"; sha256="1g25896i244fv2bpzd68sd542s2842fs39bssxdjd8fcshxkzy2v"; depends=[]; }; + Rgraphviz = derive2 { name="Rgraphviz"; version="2.25.1"; sha256="1l98pa3zp18xp64phrp5k7sn9an3a8mqp124ik8a2gk8hs021glx"; depends=[graph]; }; + Rhdf5lib = derive2 { name="Rhdf5lib"; version="1.3.3"; sha256="19r2afmvik4as8cwgk0adh3rm94bjp9vll3c63845swrsk13smzz"; depends=[]; }; Rhtslib = derive2 { name="Rhtslib"; version="1.13.4"; sha256="0g60pz7ssy872ppws7qvsv7miph3yhx48p6sqmxi3qbz0qs6dq15"; depends=[zlibbioc]; }; RiboProfiling = derive2 { name="RiboProfiling"; version="1.11.0"; sha256="0l76dfz2r2grx31v8ic80k3mry78m20znssrh5i7v6xfh33ghg6c"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 IRanges plyr reshape2 Rsamtools rtracklayer S4Vectors sqldf]; }; Ringo = derive2 { name="Ringo"; version="1.45.0"; sha256="0pwyfjv8f91g7i1h9qpzwgbkgyh04dyvmrm9v4rdabmfbhr38c6g"; depends=[Biobase BiocGenerics genefilter lattice limma Matrix RColorBrewer vsn]; }; - Risa = derive2 { name="Risa"; version="1.23.0"; sha256="1kch6h68a6sxdrndqzxmqhyj5mv08iipdmv09z3hax7aw45lk08h"; depends=[affy Biobase biocViews Rcpp xcms]; }; + Risa = derive2 { name="Risa"; version="1.23.2"; sha256="0ng31ms4ndfgwna99qqf73ad9klgi7d477x3my4wkd6896hk7xg3"; depends=[affy Biobase biocViews Rcpp xcms]; }; Rmagpie = derive2 { name="Rmagpie"; version="1.37.0"; sha256="1qzxifxdkc86p4q8l7qz8bmxlh5an7zkmgbzb72chwm6bby774m8"; depends=[Biobase e1071 kernlab pamr]; }; RmiR = derive2 { name="RmiR"; version="1.37.0"; sha256="0zz0jgqfqph0rhkbx0bgm8kcwm81hsk1cml8a917gfymfpzj93s8"; depends=[DBI RmiR_Hs_miRNA RSVGTipsDevice]; }; Rmmquant = derive2 { name="Rmmquant"; version="0.99.11"; sha256="0lj7dnjf5msrn7fbr68krv2rgav8qrpahgj37qa64k5cn0xyiblw"; depends=[BiocStyle DESeq2 devtools GenomicRanges org_Mm_eg_db Rcpp S4Vectors SummarizedExperiment TBX20BamSubset TxDb_Mmusculus_UCSC_mm9_knownGene]; }; - RnBeads = derive2 { name="RnBeads"; version="1.13.1"; sha256="146aziw6d7jalkjj81kgdkbnmzpvia8khgqkbpfngjykyykdgqy9"; depends=[BiocGenerics cluster ff fields GenomicRanges ggplot2 gplots gridExtra illuminaio IRanges limma MASS matrixStats methylumi plyr S4Vectors]; }; + RnBeads = derive2 { name="RnBeads"; version="1.99.0"; sha256="1gmhq1rp5jlkm0dmbzzxzpylyxzpbf2529j3v7a37fq4pia0nylk"; depends=[BiocGenerics cluster ff fields GenomicRanges ggplot2 gplots gridExtra illuminaio IRanges limma MASS matrixStats methylumi plyr S4Vectors]; }; RnaSeqSampleSize = derive2 { name="RnaSeqSampleSize"; version="1.13.0"; sha256="0d27jiw016fkmzpd4lsjnrkd122amqi37cr5rpnwviyw47rw5dxj"; depends=[biomaRt edgeR heatmap3 KEGGREST matlab Rcpp RnaSeqSampleSizeData]; }; Rnits = derive2 { name="Rnits"; version="1.15.0"; sha256="0vg3rx87fw9y792b9icf1qliwsbi7h74csk7n9ya8jwjsyb0fcv2"; depends=[affy Biobase boot ggplot2 impute limma qvalue reshape2]; }; Roleswitch = derive2 { name="Roleswitch"; version="1.19.0"; sha256="12pqrclq4vfsv0y9ykisri5l2zy3pz3sz22xqlqfkmlldqvngy4v"; depends=[Biobase biomaRt Biostrings DBI microRNA plotrix pracma reshape]; }; RpsiXML = derive2 { name="RpsiXML"; version="2.23.0"; sha256="061r9c1lb3qrm4lwpk87ynsi6nqjwqv2cxk9z6l01b14cb2mn6r3"; depends=[annotate AnnotationDbi Biobase graph hypergraph RBGL XML]; }; - Rqc = derive2 { name="Rqc"; version="1.15.0"; sha256="07zq9p2jkkzfjkccwryfh02xrz6bq20lw3z9v1pikk0dap6g1447"; depends=[BiocGenerics BiocParallel BiocStyle Biostrings biovizBase digest GenomicAlignments GenomicFiles ggplot2 IRanges knitr markdown plyr Rcpp reshape2 Rsamtools S4Vectors shiny ShortRead]; }; - Rsamtools = derive2 { name="Rsamtools"; version="1.33.0"; sha256="0qp084lwadvwngn98lmlj758yra7il5sykdnxj82a4llr38fwg20"; depends=[BiocGenerics BiocParallel Biostrings bitops GenomeInfoDb GenomicRanges IRanges S4Vectors XVector zlibbioc]; }; - Rsubread = derive2 { name="Rsubread"; version="1.31.5"; sha256="14azrcgip829pm1aa6yq2s50zghf83l7mn7pizc98qjrlkwbia89"; depends=[]; }; + Rqc = derive2 { name="Rqc"; version="1.15.1"; sha256="0hb3115hrq4vgl32w01fagkbyisxxkbhs96fbxrz3rlkw982b636"; depends=[BiocGenerics BiocParallel BiocStyle Biostrings biovizBase digest GenomicAlignments GenomicFiles ggplot2 IRanges knitr markdown plyr Rcpp reshape2 Rsamtools S4Vectors shiny ShortRead]; }; + Rsamtools = derive2 { name="Rsamtools"; version="1.33.7"; sha256="1jlhfjdby0cgsjfjcbf6kgcc8g1c6nfwlyp67yrn6x577cf9vl40"; depends=[BiocGenerics BiocParallel Biostrings bitops GenomeInfoDb GenomicRanges IRanges S4Vectors XVector zlibbioc]; }; + Rsubread = derive2 { name="Rsubread"; version="1.31.23"; sha256="1n59sxlfmwvk9yfp88lcffbqpbxdg5b1hgawkz0d3sy9f4wv6vg1"; depends=[]; }; Rtreemix = derive2 { name="Rtreemix"; version="1.43.0"; sha256="0wkszdsbpkai8snqvgr46mc0kqlgha76hclr4kbgddlbg9cmbymh"; depends=[Biobase graph Hmisc]; }; - S4Vectors = derive2 { name="S4Vectors"; version="0.19.17"; sha256="1cqv7lcgrqbvffmi8xw0pwwl2k3s6kyyfx4dhj05w42r5ax9wk0k"; depends=[BiocGenerics]; }; + S4Vectors = derive2 { name="S4Vectors"; version="0.19.24"; sha256="0r8plfk310jkymlpkxvkqh9b5y9xd00iy2jn28w5ajf7zxrdbxl2"; depends=[BiocGenerics]; }; SAGx = derive2 { name="SAGx"; version="1.55.0"; sha256="1xriaf6qhmisx7415jgrpk6p0jhhv0mn3ab1zj4g6dvm495s0579"; depends=[Biobase multtest]; }; SANTA = derive2 { name="SANTA"; version="2.19.0"; sha256="0qfzmsqssb62bab9csak82s0dhrrpz93q0825sdjk7sy2qnp3c6l"; depends=[igraph Matrix snow]; }; SBMLR = derive2 { name="SBMLR"; version="1.77.0"; sha256="0xhs5adrirlplm8m3ldsw0m085wqi7mgjn3c7ldkhmlr9w9vc7wg"; depends=[deSolve XML]; }; SC3 = derive2 { name="SC3"; version="1.9.1"; sha256="1nj5sjxgv0ic0s74w9vy3dwnrwywwj2kaydnn5s1p1hnrc6xsm11"; depends=[BiocGenerics cluster doParallel doRNG e1071 foreach ggplot2 pheatmap Rcpp RcppArmadillo robustbase ROCR rrcov S4Vectors shiny SingleCellExperiment SummarizedExperiment WriteXLS]; }; SCAN_UPC = derive2 { name="SCAN.UPC"; version="2.23.0"; sha256="1l7h4r4msq8gdiklmnb8cnh29babknzsbncxg3qkrf28q6gihz29"; depends=[affy affyio Biobase Biostrings foreach GEOquery IRanges MASS oligo sva]; }; - SCnorm = derive2 { name="SCnorm"; version="1.3.0"; sha256="0zij0ny8xnmxcci08br3vb10dfmsxp11mgfr6f5ga8s868n09260"; depends=[BiocParallel cluster data_table forcats ggplot2 moments quantreg S4Vectors SummarizedExperiment]; }; - SDAMS = derive2 { name="SDAMS"; version="1.1.0"; sha256="0z6ajklzq6srlx2r4ymgpsgfzzg5qzypcza7kh0zfahg2pb262w4"; depends=[qvalue SummarizedExperiment trust]; }; + SCBN = derive2 { name="SCBN"; version="0.99.2"; sha256="10rcvn19k2034dgcc5lyv24ir5ql9qsikr5fplsp4qc4v9z8v658"; depends=[]; }; + SCnorm = derive2 { name="SCnorm"; version="1.3.3"; sha256="0vbyvvx3pf5k9j9fy0jkfawic3l54kj5sjmsgb1bb6b5x1njdz0h"; depends=[BiocParallel cluster data_table forcats ggplot2 moments quantreg S4Vectors SingleCellExperiment SummarizedExperiment]; }; + SDAMS = derive2 { name="SDAMS"; version="1.1.2"; sha256="0zd1y03g9dxflvj3adg2jqlzcipbaz87vm927l1cd3pdzgzvx294"; depends=[qvalue SummarizedExperiment trust]; }; SELEX = derive2 { name="SELEX"; version="1.13.0"; sha256="0n2xpdyr6sy8mnbq9vqccaphfa5pjbldcnmpm4zb9w2zdg27g24k"; depends=[Biostrings rJava]; }; SEPA = derive2 { name="SEPA"; version="1.11.0"; sha256="19904q9pxbxwaj8vfqk1nvwb5sn69g15zfk9xyb7wwnwxrrkph0r"; depends=[ggplot2 org_Hs_eg_db org_Mm_eg_db reshape2 segmented shiny topGO]; }; - SEPIRA = derive2 { name="SEPIRA"; version="1.1.0"; sha256="0wxk45lp7gdnshr4w4205khkq6dn09p7vr77s9hdz8968wj0rzg3"; depends=[corpcor limma]; }; + SEPIRA = derive2 { name="SEPIRA"; version="1.1.2"; sha256="1v6xqrvvnkf5r5cl6k4akq9450qhii0hwbysc76ndnwyc7lgmjws"; depends=[corpcor limma]; }; SGSeq = derive2 { name="SGSeq"; version="1.15.0"; sha256="09ksqyszgh84lwv0vzy8kp4vdhczdqpk1mr7h18ja5rpilnk60r0"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges igraph IRanges Rsamtools rtracklayer RUnit S4Vectors SummarizedExperiment]; }; SIAMCAT = derive2 { name="SIAMCAT"; version="1.1.0"; sha256="0aaw372yl2b74ni3hr788bqglma679vqfzhfad2903ln0lx54rl3"; depends=[beanplot glmnet gridBase gridExtra LiblineaR matrixStats mlr ParamHelpers phyloseq pROC PRROC RColorBrewer]; }; SICtools = derive2 { name="SICtools"; version="1.11.0"; sha256="1jgq6acqqfx6fcwkyqn49p94m399dblc86s3hf7xgdml61jjxa81"; depends=[Biostrings doParallel GenomicRanges IRanges matrixStats plyr Rsamtools stringr]; }; SIM = derive2 { name="SIM"; version="1.51.0"; sha256="0z23b4pgiyah5qcixhww7csmkq01gw0bd9hmzrwrn046yy3mmnql"; depends=[globaltest quantreg quantsmooth]; }; - SIMAT = derive2 { name="SIMAT"; version="1.13.0"; sha256="0kac998ddp94qls9jd68bd32cvnkxzdk63ysrcliiwmxcpplymrq"; depends=[ggplot2 mzR Rcpp reshape2]; }; - SIMLR = derive2 { name="SIMLR"; version="1.7.0"; sha256="0f8ds6qjkj2z79pl18pwgwsn5fp0k05s50kakfiy9cbmbhnqy9ik"; depends=[Matrix pracma Rcpp RcppAnnoy RSpectra]; }; + SIMAT = derive2 { name="SIMAT"; version="1.13.4"; sha256="142lafcpbmfnx1ywwas9dba4gz2vxnds4pia4dcxya6r254pbw9b"; depends=[ggplot2 mzR Rcpp reshape2]; }; + SIMD = derive2 { name="SIMD"; version="0.99.10"; sha256="17m05cvc1yzdjlyx7j971cais8lyacil2vjfl09vvj93ygfks1sy"; depends=[edgeR methylMnM statmod]; }; + SIMLR = derive2 { name="SIMLR"; version="1.7.4"; sha256="0pgz774i1ffix5s37qxxm78wa283zaghshwrj1chqzsk2hw1vy21"; depends=[Matrix pracma Rcpp RcppAnnoy RSpectra]; }; SISPA = derive2 { name="SISPA"; version="1.11.0"; sha256="1cw4xzcqjp8pdaglar9dfgr25zqyb6h31k3hn66hyxg9cyagj4k4"; depends=[changepoint data_table genefilter ggplot2 GSVA plyr]; }; SLGI = derive2 { name="SLGI"; version="1.41.0"; sha256="0ihb43dmab2188641l5zpn98djj68mm5xq2v79wqrh136n9cam9j"; depends=[AnnotationDbi Biobase BiocGenerics GO_db lattice ScISI]; }; SLqPCR = derive2 { name="SLqPCR"; version="1.47.0"; sha256="0m2qhkc6l158phg5hwfcs5wlq2n2nrhsjprrmzjv3q9rsdhwid8c"; depends=[]; }; SMAP = derive2 { name="SMAP"; version="1.45.0"; sha256="1i94sywcxp3pg30b93v5p9n70va1mixk67jxxfyhc6dlbfpx7d3y"; depends=[]; }; SMITE = derive2 { name="SMITE"; version="1.9.0"; sha256="1hvmbsz7p4ibjfh2a45aqpvv1kridkfg3zk3kzgbmws5l1vf154z"; depends=[AnnotationDbi Biobase BioNet geneLenDataBase GenomicRanges ggplot2 goseq Hmisc igraph IRanges KEGG_db org_Hs_eg_db plyr reactome_db S4Vectors scales]; }; SNAGEE = derive2 { name="SNAGEE"; version="1.21.0"; sha256="0lsb2rqb1a3dgfgv5bijgb87y3zdl3mp1p38nzzi05n180yrgpzr"; depends=[SNAGEEdata]; }; - SNPRelate = derive2 { name="SNPRelate"; version="1.15.0"; sha256="02xaxm3qrlgalndk4fmmvdy0rxpv565ysh2vc36gxcdvgz39pf1s"; depends=[gdsfmt]; }; + SNPRelate = derive2 { name="SNPRelate"; version="1.15.5"; sha256="19lzy5jcp64kvg569x0688v03jalpbigmxpbaqsyc61j9h3gqkh7"; depends=[gdsfmt]; }; SNPchip = derive2 { name="SNPchip"; version="2.27.0"; sha256="15cf2nrwixiqiyav5634qlv7md5dmv17h3z97j5771dv75fkl2gr"; depends=[Biobase foreach GenomeInfoDb GenomicRanges IRanges lattice oligoClasses S4Vectors SummarizedExperiment]; }; - SNPediaR = derive2 { name="SNPediaR"; version="1.7.0"; sha256="0van1q586n5dd5snvhc3j7hkdhdwrmbky9mj1nfdfzgcdl7bnmk3"; depends=[jsonlite RCurl]; }; + SNPediaR = derive2 { name="SNPediaR"; version="1.7.1"; sha256="1lly6gajffcia6kjb3bshy401w2ydrwj674kas3dipamchp7k7p9"; depends=[jsonlite RCurl]; }; SNPhood = derive2 { name="SNPhood"; version="1.11.0"; sha256="03dami2l6y21fh7sazh3bzjhj1n9vqc0fva4ig1kkdansd1bvp0f"; depends=[BiocGenerics BiocParallel Biostrings checkmate cluster data_table DESeq2 GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges lattice RColorBrewer reshape2 Rsamtools S4Vectors scales SummarizedExperiment VariantAnnotation]; }; SPEM = derive2 { name="SPEM"; version="1.21.0"; sha256="19l21yaqcazymnapqalrkb6az10jkmzy8zvp5wh28rb8bl2p88f3"; depends=[Biobase Rsolnp]; }; SPIA = derive2 { name="SPIA"; version="2.33.0"; sha256="06si8xr8hc4sr87gafaphv9rfiq9w82gwd4xzwn0js00fgalffvd"; depends=[KEGGgraph]; }; - SPLINTER = derive2 { name="SPLINTER"; version="1.7.2"; sha256="070ciavxg9y5mahaaaq7sbsz1zkv8llz69x6qvh332v0hchn29yg"; depends=[biomaRt Biostrings BSgenome_Mmusculus_UCSC_mm9 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 Gviz IRanges plyr S4Vectors seqLogo stringr]; }; + SPLINTER = derive2 { name="SPLINTER"; version="1.7.4"; sha256="007h0y808cylwkr9bjgsdvf4d4bfvz0xpalh06drq666cr9cxdzr"; depends=[biomaRt Biostrings BSgenome_Mmusculus_UCSC_mm9 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 googleVis Gviz IRanges plyr S4Vectors seqLogo stringr]; }; SPONGE = derive2 { name="SPONGE"; version="1.3.0"; sha256="0xnrzzlm12rrr54ymfa10pcmzgq7njqhgynv9ki9msxrvn1rhcd4"; depends=[Biobase data_table doRNG expm foreach glmnet gRbase igraph iterators logging MASS ppcor]; }; SQUADD = derive2 { name="SQUADD"; version="1.31.0"; sha256="0dh04i31lzdpkmqhawm1krn132hqj6qz5i6cj2sxxvk4chqq1xmf"; depends=[RColorBrewer]; }; SRAdb = derive2 { name="SRAdb"; version="1.43.2"; sha256="01nr09lkm4lwc6p0mfl1nn8g4fkzsw8c157snkcclqzn829121bp"; depends=[GEOquery graph RCurl RSQLite]; }; @@ -701,81 +751,86 @@ in with self; { STAN = derive2 { name="STAN"; version="2.9.0"; sha256="0i8y0a2i60irdg3061l4fmwdmnfrf0fc5byhx1bwbr8w5g4ahpnh"; depends=[BiocGenerics GenomeInfoDb GenomicRanges Gviz IRanges poilog Rsolnp S4Vectors]; }; STATegRa = derive2 { name="STATegRa"; version="1.17.1"; sha256="1k55kb5x108iq3f2hbbair96x9kn8cci0753jkmd485j3mizfqq4"; depends=[affy Biobase calibrate edgeR foreach ggplot2 gplots gridExtra limma MASS]; }; STRINGdb = derive2 { name="STRINGdb"; version="1.21.0"; sha256="079y5h2jfx40vr5yvvpafzzld1z7jc9z98gm31qy7gvm2lyzvgl5"; depends=[gplots hash igraph plotrix plyr png RColorBrewer RCurl sqldf]; }; - STROMA4 = derive2 { name="STROMA4"; version="1.5.0"; sha256="0b20pdxc3wsndqhhrxjayi3ldsjnim3cgswa73kjdpdrm3amsvy4"; depends=[Biobase BiocParallel cluster matrixStats]; }; + STROMA4 = derive2 { name="STROMA4"; version="1.5.2"; sha256="1c7cjzrvbb62j8lyq8fn6xl375yhzghw1a4zy6pp0s8sd1r6vpmn"; depends=[Biobase BiocParallel cluster matrixStats]; }; SVAPLSseq = derive2 { name="SVAPLSseq"; version="1.7.0"; sha256="0g27ik0m7z6wya7z2xgaip0c8dingv1c2jq9qbwpwipvk2yl8f50"; depends=[edgeR ggplot2 limma lmtest pls SummarizedExperiment]; }; SVM2CRM = derive2 { name="SVM2CRM"; version="1.13.0"; sha256="0bnd0bpxwd2c33xdp9bfn8lsvf9dm8an4n43py6akshf6q2l9x3y"; depends=[AnnotationDbi GenomicRanges IRanges LiblineaR mclust pls ROCR rtracklayer squash SVM2CRMdata verification zoo]; }; - SWATH2stats = derive2 { name="SWATH2stats"; version="1.11.4"; sha256="144p070bcq5j45byw9z666qkzjk8c4brscl4pnsgkghzgiv7fg34"; depends=[biomaRt data_table ggplot2 reshape2]; }; + SWATH2stats = derive2 { name="SWATH2stats"; version="1.11.7"; sha256="1j8c18kiijzz1sc28n4asspljdgxmd000ms6qq5pzac36gkjwn98"; depends=[biomaRt data_table ggplot2 reshape2]; }; SamSPECTRAL = derive2 { name="SamSPECTRAL"; version="1.35.2"; sha256="0dzapl17bgykgsd9qapc1v0ihzn229n25zvagjp1kdx3r4jqmkbb"; depends=[]; }; ScISI = derive2 { name="ScISI"; version="1.53.0"; sha256="02m4ma2izak4vg4240hnny0b84x440myayjwqcysg8r5gr6pzd83"; depends=[annotate AnnotationDbi apComplex GO_db org_Sc_sgd_db RpsiXML]; }; Scale4C = derive2 { name="Scale4C"; version="1.3.0"; sha256="1a97dchcinhp24k0r5f7agca33zk3qyh1scz8250aiilhfa4w37y"; depends=[GenomicRanges IRanges smoothie SummarizedExperiment]; }; - Sconify = derive2 { name="Sconify"; version="1.1.0"; sha256="0is0ix7591gjzpbnv388gnr2jnxbpbjvywv3ln61ign9p5h9gjva"; depends=[dplyr flowCore ggplot2 magrittr readr Rtsne tibble]; }; - SemDist = derive2 { name="SemDist"; version="1.15.0"; sha256="1rfmlihgk2wa1z3a2yqp43nddxw4nmjaybv9jvp84b0yi3drvn8z"; depends=[annotate AnnotationDbi GO_db]; }; - SeqArray = derive2 { name="SeqArray"; version="1.21.2"; sha256="0kkci67zrxlyhkbap9khn8655wl63h33004gkxzz1b3drvn0a95b"; depends=[Biostrings gdsfmt GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; + Sconify = derive2 { name="Sconify"; version="1.1.3"; sha256="1v5g6w51xfh8gs026k68lhrkzp4fkd5bwkjr7vxlbxggwp523sia"; depends=[dplyr flowCore FNN ggplot2 magrittr readr Rtsne tibble]; }; + SemDist = derive2 { name="SemDist"; version="1.15.2"; sha256="1mqv1xj3wwadrvf7qv2fpqhjgmvlipsy8afljl67i2y5ik025svi"; depends=[annotate AnnotationDbi GO_db]; }; + SeqArray = derive2 { name="SeqArray"; version="1.21.8"; sha256="03mv656dyvpxpqpxayr0d5zd47zjk0rn20jj58ma0cyln2a1rly8"; depends=[Biostrings gdsfmt GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; SeqGSEA = derive2 { name="SeqGSEA"; version="1.21.0"; sha256="10900fdl0g6izlpxwc3x2yix3cxpqfx6xxvbdq66mx2zqaksrq88"; depends=[Biobase biomaRt DESeq doParallel]; }; - SeqSQC = derive2 { name="SeqSQC"; version="1.3.0"; sha256="19jv3yyga2fxpndi0rr36vrjz694l97aabr3llkcw7a6mgk78g12"; depends=[e1071 ExperimentHub gdsfmt GenomicRanges GGally ggplot2 IRanges rbokeh RColorBrewer reshape2 rmarkdown S4Vectors SNPRelate]; }; - SeqVarTools = derive2 { name="SeqVarTools"; version="1.19.2"; sha256="18l60hwj04hr8yln8rm1g0s71axxhnpkzn1khfr0v872csi57m8p"; depends=[Biobase dplyr gdsfmt GenomicRanges GWASExactHW IRanges logistf Matrix S4Vectors SeqArray tidyr]; }; + SeqSQC = derive2 { name="SeqSQC"; version="1.3.1"; sha256="0avzc9h0xabr2j54gbfpbj5dvf0yr690ckzj9phqz1g4xj16sa25"; depends=[e1071 ExperimentHub gdsfmt GenomicRanges GGally ggplot2 IRanges rbokeh RColorBrewer reshape2 rmarkdown S4Vectors SNPRelate]; }; + SeqVarTools = derive2 { name="SeqVarTools"; version="1.19.4"; sha256="0cqf6lmqa0r9rzslcgrvfislkmf0cx5ylp6mqqxfzi09q7f74s6q"; depends=[Biobase dplyr gdsfmt GenomicRanges GWASExactHW IRanges logistf Matrix S4Vectors SeqArray tidyr]; }; ShortRead = derive2 { name="ShortRead"; version="1.39.0"; sha256="1cwpd5xf40gwpcnwmvxysxsl21cgfx3rdgigrawlzlzfd7j9kdig"; depends=[Biobase BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges hwriter IRanges lattice latticeExtra Rsamtools S4Vectors XVector zlibbioc]; }; SigCheck = derive2 { name="SigCheck"; version="2.13.0"; sha256="1cbdry06knmycqyc7p0z598rxlyyrw6yc8an8qm74b9p8vbnwp1a"; depends=[Biobase BiocParallel e1071 MLInterfaces survival]; }; SigFuge = derive2 { name="SigFuge"; version="1.19.0"; sha256="07j9nzw5c4g99yf458n8jwkndr79mam2n4a6kcz9fpcsyjq4plp4"; depends=[GenomicRanges ggplot2 matlab reshape sigclust]; }; SimBindProfiles = derive2 { name="SimBindProfiles"; version="1.19.0"; sha256="0916ml80crldixb8jn5sbzp156ba0r9lc7wc2ri8wmrslv3w97lv"; depends=[Biobase limma mclust Ringo]; }; - SingleCellExperiment = derive2 { name="SingleCellExperiment"; version="1.3.6"; sha256="0rlww0zvrkfjpx68qafvakbaa5lcjlyrp0phrsji4zh5niv0sy4x"; depends=[BiocGenerics S4Vectors SummarizedExperiment]; }; + SingleCellExperiment = derive2 { name="SingleCellExperiment"; version="1.3.12"; sha256="1f4c1ma86rzxxqfmyr6w29fmclm6yrmlinkvsdfs8g5ynvlr272m"; depends=[BiocGenerics S4Vectors SummarizedExperiment]; }; SomaticSignatures = derive2 { name="SomaticSignatures"; version="2.17.0"; sha256="1xq3m2i0b9rklg741796i8n1x0d07mn3xbdmvlc3islh368661jw"; depends=[Biobase Biostrings GenomeInfoDb GenomicRanges ggbio ggplot2 IRanges NMF pcaMethods proxy reshape2 S4Vectors VariantAnnotation]; }; - SpacePAC = derive2 { name="SpacePAC"; version="1.19.0"; sha256="10g626vyxaidiypjwymk183hvn4nm2vayvka127aavpfaq4ka55r"; depends=[iPAC]; }; - SparseSignatures = derive2 { name="SparseSignatures"; version="1.1.0"; sha256="1yhk7grm59ba7d7zwbqa9wlc00jzng9gdbaprpq9r5j6kj61id1z"; depends=[Biostrings BSgenome BSgenome_Hsapiens_1000genomes_hs37d5 data_table GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges NMF nnlasso nnls]; }; + SpacePAC = derive2 { name="SpacePAC"; version="1.19.3"; sha256="0i74bxw99bbs83zvs625pxqbjgkcp0jw076g3j6k5mqlhq98bj7i"; depends=[iPAC]; }; + SparseSignatures = derive2 { name="SparseSignatures"; version="1.1.5"; sha256="148x34p90x90lkl1ijj0s9gab3k295dbw2hyyy2hmx6hsmvp6hbl"; depends=[Biostrings BSgenome BSgenome_Hsapiens_1000genomes_hs37d5 data_table GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges NMF nnlasso nnls]; }; SpeCond = derive2 { name="SpeCond"; version="1.35.0"; sha256="0sqb84sa7yf34lwwkchh5wb3dp6n4wk8kzqmsydx5lsaz6fxg32r"; depends=[Biobase fields hwriter mclust RColorBrewer]; }; - SpidermiR = derive2 { name="SpidermiR"; version="1.11.0"; sha256="1gjjibc2lck5ihjm9k6vh032igvr5zw8dp1r0561cq00sd8w1y2v"; depends=[AnnotationDbi gdata ggplot2 gplots gridExtra httr igraph lattice latticeExtra miRNAtap miRNAtap_db networkD3 org_Hs_eg_db TCGAbiolinks visNetwork]; }; + SpidermiR = derive2 { name="SpidermiR"; version="1.11.1"; sha256="0mxl07rzcs9agly7hx8f1xyjwfv8bi7yq93y2jzw0bfmxnn7b0rr"; depends=[AnnotationDbi gdata ggplot2 gplots gridExtra httr igraph lattice latticeExtra miRNAtap miRNAtap_db networkD3 org_Hs_eg_db TCGAbiolinks visNetwork]; }; SplicingGraphs = derive2 { name="SplicingGraphs"; version="1.21.0"; sha256="08n37qnhfk6j6gf0scm5m6i7q8ags821v4lp8aw670kij8xm4j5w"; depends=[BiocGenerics GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph igraph IRanges Rgraphviz Rsamtools S4Vectors]; }; - StarBioTrek = derive2 { name="StarBioTrek"; version="1.7.0"; sha256="1fv0xdgzjmmsla8265732vc31drpija8wfdigg5cjhh89mrlpgfm"; depends=[AnnotationDbi e1071 igraph KEGGREST org_Hs_eg_db ROCR SpidermiR]; }; + StarBioTrek = derive2 { name="StarBioTrek"; version="1.7.1"; sha256="14a7rj8386iaqi3l47ahkpijh7bwwr8sir9ncmzj55fvk3m7c05g"; depends=[AnnotationDbi e1071 igraph KEGGREST org_Hs_eg_db ROCR SpidermiR]; }; Starr = derive2 { name="Starr"; version="1.37.0"; sha256="0is2fy9zf2cgl3ywkn89v7n134sh812gibr3mpb8iccplvis7dks"; depends=[affxparser affy MASS pspline Ringo zlibbioc]; }; Streamer = derive2 { name="Streamer"; version="1.27.0"; sha256="14wdvp51cgmzahqqr9dv5whgrl85yjj72sj1v3kqislqvfkn7lww"; depends=[BiocGenerics graph RBGL]; }; - SummarizedBenchmark = derive2 { name="SummarizedBenchmark"; version="1.99.1"; sha256="1madkjzhjlv7hh5av4pwkjk35vdmc5pcdsy70fngck4kvrhbs28z"; depends=[BiocGenerics BiocParallel crayon digest dplyr ggplot2 mclust rlang S4Vectors sessioninfo stringr SummarizedExperiment tibble tidyr UpSetR]; }; - SummarizedExperiment = derive2 { name="SummarizedExperiment"; version="1.11.5"; sha256="19qrcp3psnx3dpkcif3i0dy8fgn4nwliqii8v7mjllh2v6vz71x4"; depends=[Biobase BiocGenerics DelayedArray GenomeInfoDb GenomicRanges IRanges Matrix S4Vectors]; }; - Sushi = derive2 { name="Sushi"; version="1.19.0"; sha256="1pqgrjprsifbf6whzw4y01sqwal35c160ibg49d5rn1r22lyqkc2"; depends=[biomaRt zoo]; }; - SwathXtend = derive2 { name="SwathXtend"; version="2.3.0"; sha256="1fzkbl4rl3w04z449m3y4dwq4lmqjll0xsqg88kr1jy7k0bzhfnv"; depends=[e1071 lattice openxlsx VennDiagram]; }; - SwimR = derive2 { name="SwimR"; version="1.19.0"; sha256="03qv3hcky138x449s5axc8j37j45hpalibmwwa3zd5a4fa15zmqr"; depends=[gplots heatmap_plus R2HTML signal]; }; - TCC = derive2 { name="TCC"; version="1.21.1"; sha256="0p2cphkmzlpzqy2shszyzwxga35hyp0q8n0aj9hbjzvapnil61pg"; depends=[baySeq DESeq DESeq2 edgeR ROC samr]; }; - TCGAbiolinks = derive2 { name="TCGAbiolinks"; version="2.9.2"; sha256="1jbgv3p5dqhjkm5spn6x73z00ghjb1i4fbmn9xpns0v93axmd1k8"; depends=[biomaRt circlize ComplexHeatmap ConsensusClusterPlus data_table doParallel downloader dplyr EDASeq edgeR genefilter GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggrepel ggthemes gridExtra httr IRanges jsonlite knitr limma matlab plyr R_utils RColorBrewer readr rvest S4Vectors scales selectr stringr SummarizedExperiment survival survminer sva tibble XML xml2]; }; - TCGAutils = derive2 { name="TCGAutils"; version="1.1.11"; sha256="1dmsjw34shqjhj59g4r3320pgh2hlssp8yb12mhcf21xs95a6pql"; depends=[BiocGenerics GenomeInfoDb GenomicDataCommons GenomicRanges IRanges MultiAssayExperiment rvest S4Vectors stringr SummarizedExperiment xml2]; }; + SummarizedBenchmark = derive2 { name="SummarizedBenchmark"; version="1.99.3"; sha256="00a6wnysxmxlanjh8zy3bycl9grvzlpsfc7p8qnslyz446dnqdp8"; depends=[BiocGenerics BiocParallel crayon digest dplyr ggplot2 mclust rlang S4Vectors sessioninfo stringr SummarizedExperiment tibble tidyr UpSetR]; }; + SummarizedExperiment = derive2 { name="SummarizedExperiment"; version="1.11.6"; sha256="1wzp1yvn5vrfrr54v208i63rvb9awv7aplppv3lvwgk0j09hl4hh"; depends=[Biobase BiocGenerics DelayedArray GenomeInfoDb GenomicRanges IRanges Matrix S4Vectors]; }; + Sushi = derive2 { name="Sushi"; version="1.19.2"; sha256="12dz0l0lkvayqcvr21i2jdlpbfpvvd3rnzchar2yq7k7cwwa3v9s"; depends=[biomaRt zoo]; }; + SwathXtend = derive2 { name="SwathXtend"; version="2.3.1"; sha256="185rdcmdrahcmga3rkqniszg2i6scynspf7hh77q1ld7hi62ikcq"; depends=[e1071 lattice openxlsx VennDiagram]; }; + SwimR = derive2 { name="SwimR"; version="1.19.1"; sha256="1nbcan63p8jplrc1w7ljkmfisczgi9jg5rasdfm2iws5azpa36w9"; depends=[gplots heatmap_plus R2HTML signal]; }; + TCC = derive2 { name="TCC"; version="1.21.5"; sha256="140fhqn6yk8yayqhq47zpb6g3a1pwqhxdi6np5szz1h45scxzw01"; depends=[baySeq DESeq DESeq2 edgeR ROC]; }; + TCGAbiolinks = derive2 { name="TCGAbiolinks"; version="2.9.5"; sha256="1lw67yvmhh24yh6rhanvpxp1ma9qwy8klia4py29jskw86vva3ca"; depends=[biomaRt circlize ComplexHeatmap ConsensusClusterPlus data_table doParallel downloader dplyr EDASeq edgeR genefilter GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggrepel ggthemes gridExtra httr IRanges jsonlite knitr limma matlab plyr R_utils RColorBrewer readr rvest S4Vectors scales selectr stringr SummarizedExperiment survival survminer sva tibble XML xml2]; }; + TCGAbiolinksGUI = derive2 { name="TCGAbiolinksGUI"; version="1.7.3"; sha256="0h4cax1nl2f1ly5q7019jsadfmpva5ykg3qhz9zak8vph8jbwxyv"; depends=[caret clusterProfiler colourpicker data_table downloader DT ELMER ggplot2 ggrepel IlluminaHumanMethylation27kanno_ilmn12_hg19 IlluminaHumanMethylation27kmanifest IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest maftools minfi pathview plotly readr shiny shinyBS shinydashboard shinyFiles shinyjs stringr SummarizedExperiment TCGAbiolinks TCGAbiolinksGUI_data]; }; + TCGAutils = derive2 { name="TCGAutils"; version="1.1.24"; sha256="1564ssv2f3xkc0lg4k8a4jlccbad9y8zbqx2iyy9ib31rjcysswj"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicDataCommons GenomicFeatures GenomicRanges IRanges MultiAssayExperiment RaggedExperiment rvest S4Vectors stringr SummarizedExperiment xml2]; }; TCseq = derive2 { name="TCseq"; version="1.5.0"; sha256="1xir0481s72jwp0jnrb9134pv9vwy3g8mhk0rpzwr4qvxxxy7zxn"; depends=[BiocGenerics cluster e1071 edgeR GenomicAlignments GenomicRanges ggplot2 IRanges locfit reshape2 Rsamtools SummarizedExperiment]; }; TDARACNE = derive2 { name="TDARACNE"; version="1.31.0"; sha256="19qk0kc7yi4z8kqg7a9msxdiazad3y7xvshmf6pk0999ypacqws4"; depends=[Biobase GenKern Rgraphviz]; }; TEQC = derive2 { name="TEQC"; version="4.3.0"; sha256="1ldjq8ap4si95zqywhp27rzd8kgij2p9hvcb0w8qvzw2ndk950z4"; depends=[Biobase BiocGenerics hwriter IRanges Rsamtools]; }; TFARM = derive2 { name="TFARM"; version="1.3.0"; sha256="1c4gks6kvp8x68vnq7npxbq0q94gavbxvx3155prvx5qhsxw4jb8"; depends=[arules fields GenomicRanges stringr]; }; - TFBSTools = derive2 { name="TFBSTools"; version="1.19.1"; sha256="1mi591pydgvkj5qzjlssg1lqrkgn2in8cj43af1nm9am7l92gwkw"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome caTools CNEr DBI DirichletMultinomial GenomeInfoDb GenomicRanges gtools IRanges RSQLite rtracklayer S4Vectors seqLogo TFMPvalue XML XVector]; }; - TFEA_ChIP = derive2 { name="TFEA.ChIP"; version="1.1.0"; sha256="07vwxy4sv8d8ij3cp7p17pvdf1nwbq883iqdjpcfb57ah67ffcx2"; depends=[biomaRt dplyr GenomicFeatures GenomicRanges IRanges org_Hs_eg_db R_utils TxDb_Hsapiens_UCSC_hg19_knownGene]; }; + TFBSTools = derive2 { name="TFBSTools"; version="1.19.3"; sha256="1zv3wid1jbjd8gn789an6khhsjw6kj10xzs1l2k3vji2ma4by4xd"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome caTools CNEr DBI DirichletMultinomial GenomeInfoDb GenomicRanges gtools IRanges RSQLite rtracklayer S4Vectors seqLogo TFMPvalue XML XVector]; }; + TFEA_ChIP = derive2 { name="TFEA.ChIP"; version="1.1.1"; sha256="0n71va6mqdcgqagjr2ga5g7zrbp1a3xnl4hh3yjzsaa1g5fyx1yz"; depends=[biomaRt dplyr GenomicFeatures GenomicRanges IRanges org_Hs_eg_db R_utils TxDb_Hsapiens_UCSC_hg19_knownGene]; }; TFHAZ = derive2 { name="TFHAZ"; version="1.3.0"; sha256="1j03dp2n459b373ig3yds88f1x5yawr9jqr91w2s8smx5vqqicm8"; depends=[GenomicRanges IRanges S4Vectors]; }; - TFutils = derive2 { name="TFutils"; version="1.1.0"; sha256="04q54z0hrskz3grw1ayzvcj93r3ziba01sx359c9syh6hbwzl5cd"; depends=[AnnotationDbi AnnotationFilter Biobase data_table dplyr GenomeInfoDb GenomicFeatures GenomicFiles GenomicRanges GSEABase Gviz IRanges magrittr miniUI Rsamtools S4Vectors shiny]; }; + TFutils = derive2 { name="TFutils"; version="1.1.9"; sha256="097fn90mzyafhw27hc3m0dwyls7fc5d5c4rsrp0ris90c5m9lwbb"; depends=[dplyr magrittr miniUI shiny]; }; TIN = derive2 { name="TIN"; version="1.13.0"; sha256="0iphf37gff3m1hyvijbbpp46bmjvwdppqrrwgf1yj660r01cyvyl"; depends=[aroma_affymetrix data_table impute squash stringr WGCNA]; }; TMixClust = derive2 { name="TMixClust"; version="1.3.0"; sha256="1ga7mxlaxv4hglixlqa3kjrvqikzc46mrs1435aihhf649h8zz6j"; depends=[Biobase BiocParallel cluster flexclust gss mvtnorm SPEM zoo]; }; - TPP = derive2 { name="TPP"; version="3.9.1"; sha256="183qdgly3a4xxiv1y8ckcm890dkg5rqyl99ab6pdgk3g53mx3pva"; depends=[Biobase biobroom broom data_table doParallel dplyr foreach futile_logger ggplot2 gridExtra knitr limma magrittr MASS mefa nls2 openxlsx plyr purrr RColorBrewer RCurl reshape2 rmarkdown sme stringr tidyr VennDiagram VGAM]; }; - TRONCO = derive2 { name="TRONCO"; version="2.13.0"; sha256="117vq5ia5q68z5ymbvi5y010l4qpwxsbwm9xxx5jl49a86np8s6f"; depends=[bnlearn cgdsr circlize doParallel foreach gridExtra gtable gtools igraph iterators R_matlab RColorBrewer Rgraphviz scales xtable]; }; + TPP = derive2 { name="TPP"; version="3.9.6"; sha256="152hnfxadkcr0dirwxjx428r94pxsmb2j8fpw89mnblr0l28y36g"; depends=[Biobase biobroom broom data_table doParallel dplyr foreach futile_logger ggplot2 gridExtra knitr limma magrittr MASS mefa nls2 openxlsx plyr purrr RColorBrewer RCurl reshape2 rmarkdown sme stringr tidyr VennDiagram VGAM]; }; + TRONCO = derive2 { name="TRONCO"; version="2.13.3"; sha256="0s57yxz8kdjg2rs3njlay7fan4v241nq6aqv9g08wkhnd60220av"; depends=[bnlearn cgdsr circlize doParallel foreach gridExtra gtable gtools igraph iterators R_matlab RColorBrewer Rgraphviz scales xtable]; }; TSCAN = derive2 { name="TSCAN"; version="1.19.0"; sha256="05zkydpl57j6b02bq0v3896612lbq33jbm896kimygbk4k2wa3g5"; depends=[combinat fastICA ggplot2 gplots igraph mclust mgcv plyr shiny]; }; - TSRchitect = derive2 { name="TSRchitect"; version="1.7.1"; sha256="06vzd7vs9ld714jhzdd46ippdmzmwfg705kky2wrcz6lq547llgp"; depends=[AnnotationHub BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicRanges gtools IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; + TSRchitect = derive2 { name="TSRchitect"; version="1.7.2"; sha256="0fprnylwnwrbya0zpya578ljxwj2xbrnbwwc9qb31nanhwr7p68a"; depends=[AnnotationHub BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicRanges gtools IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; TSSi = derive2 { name="TSSi"; version="1.27.0"; sha256="1a4xvqmbx2wlhad1pb6013sas5gqm27kc7jhyqp49ccbwm7ayz4r"; depends=[Biobase BiocGenerics Hmisc IRanges minqa plyr S4Vectors]; }; TTMap = derive2 { name="TTMap"; version="1.3.0"; sha256="0fg0d930icbm62rvfv0d177ld126f1shm5knird50da4vx3qr1a9"; depends=[Biobase colorRamps rgl SummarizedExperiment]; }; TVTB = derive2 { name="TVTB"; version="1.7.0"; sha256="1514rfqdrp3s1z4zf53zprslqdbsdl1w3crfbqgsv6hisqrrwlm2"; depends=[AnnotationFilter BiocGenerics BiocParallel Biostrings ensembldb ensemblVEP GenomeInfoDb GenomicRanges GGally ggplot2 Gviz IRanges limma reshape2 Rsamtools S4Vectors SummarizedExperiment VariantAnnotation]; }; - TarSeqQC = derive2 { name="TarSeqQC"; version="1.11.0"; sha256="1gbvfn5vpsbfbvpif8lvq55aav6ak619s1f743c7xj9md84rhx59"; depends=[BiocGenerics BiocParallel Biostrings cowplot GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 Hmisc IRanges openxlsx plyr reshape2 Rsamtools S4Vectors]; }; + TarSeqQC = derive2 { name="TarSeqQC"; version="1.11.2"; sha256="0h8vpdy4ja0i8jpdk87qk2dkfrz4izg2m7lgqx18fl490plii1bk"; depends=[BiocGenerics BiocParallel Biostrings cowplot GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 Hmisc IRanges openxlsx plyr reshape2 Rsamtools S4Vectors]; }; TargetScore = derive2 { name="TargetScore"; version="1.19.0"; sha256="1phdg2ncvsjgjsfggxv37n74fwj8asw73vccb8iaqj8x7vlkci85"; depends=[Matrix pracma]; }; - TargetSearch = derive2 { name="TargetSearch"; version="1.37.2"; sha256="065nq07xwdb8s7n4gg0bwdpbasdank6ga9nza25x0lsf1m4kky8r"; depends=[ncdf4]; }; - TissueEnrich = derive2 { name="TissueEnrich"; version="1.1.0"; sha256="12j0wkw964pbq62hiiavjk172hr3yp333v6c6g5kxmv2vycbxb3m"; depends=[dplyr ensurer ggplot2 GSEABase SummarizedExperiment tidyr]; }; - TitanCNA = derive2 { name="TitanCNA"; version="1.19.0"; sha256="12c30v6f9i841jyfprn3bxm9dimczwvn5d846kjxmpghf3dgdlgi"; depends=[data_table dplyr foreach GenomeInfoDb GenomicRanges IRanges Rsamtools VariantAnnotation]; }; + TargetSearch = derive2 { name="TargetSearch"; version="1.37.8"; sha256="1cgk9sg5d0m0njs75lj5c9kz5agyy89xn4vfznh2j06w6l60dvil"; depends=[ncdf4]; }; + TissueEnrich = derive2 { name="TissueEnrich"; version="1.1.9"; sha256="11254f58mqhwa54kz83iac5sblcbpz6myw8gkwg06gx393yald22"; depends=[dplyr ensurer ggplot2 GSEABase SummarizedExperiment tidyr]; }; + TitanCNA = derive2 { name="TitanCNA"; version="1.19.1"; sha256="0j84k2bysiizbzr5mfsnv7xmcmi74m7x8a14i375mahp6x9krp4v"; depends=[data_table dplyr foreach GenomeInfoDb GenomicRanges IRanges Rsamtools VariantAnnotation]; }; + TnT = derive2 { name="TnT"; version="1.3.6"; sha256="0j64j32v1d83qqil3bfb6zxlp4k92qr6khzak5lkk7vdkhpbpckk"; depends=[Biobase data_table GenomeInfoDb GenomicRanges htmlwidgets IRanges jsonlite knitr S4Vectors]; }; ToPASeq = derive2 { name="ToPASeq"; version="1.15.1"; sha256="13wzyspyipi122g976hp2haqyjhhgnwpaj844w2by8x65nh1hicl"; depends=[graph graphite Rcpp]; }; - TransView = derive2 { name="TransView"; version="1.25.0"; sha256="1vlfncr2qv03r0b695ya47dd6h2m6qcvzndag1rqi5zzdn6p0w4q"; depends=[BiocGenerics GenomicRanges gplots IRanges Rsamtools S4Vectors zlibbioc]; }; - Trendy = derive2 { name="Trendy"; version="1.3.2"; sha256="09r1slmx8cr8hc8nz5kkhd25mp19nk3mvlsg3c15lx39n5pimnhs"; depends=[BiocParallel DT gplots magrittr S4Vectors segmented shiny shinyFiles SummarizedExperiment]; }; + TransView = derive2 { name="TransView"; version="1.25.2"; sha256="0b1bx8smkfp5a282rrmlmqgfgfkiqsvzn6jnkvgn4v3pq7w3752c"; depends=[BiocGenerics GenomicRanges gplots IRanges Rsamtools S4Vectors zlibbioc]; }; + Trendy = derive2 { name="Trendy"; version="1.3.11"; sha256="01k4ryaymr3c6m3gfdqv1wq8g47x5sr4vcnp6x92gcnncmm8m1qh"; depends=[BiocParallel DT gplots magrittr S4Vectors segmented shiny shinyFiles SummarizedExperiment]; }; TurboNorm = derive2 { name="TurboNorm"; version="1.29.0"; sha256="15k6cxxwjkb56r9b1r17va2ssq4da7z72dvvgj91bd3x6vqph13q"; depends=[affy convert lattice limma marray]; }; - TxRegInfra = derive2 { name="TxRegInfra"; version="1.1.2"; sha256="18ymkwfarxfh56y4gg2fh72fccgi2xyjnb4091bgfsg8nvib6wbv"; depends=[BiocParallel GenomeInfoDb GenomicRanges IRanges mongolite RaggedExperiment rjson S4Vectors SummarizedExperiment]; }; + TxRegInfra = derive2 { name="TxRegInfra"; version="1.1.4"; sha256="1fv107daivcila7j3wkgc413138jza7s8x5g9ksgyr8kxjfs9w7b"; depends=[BiocParallel GenomeInfoDb GenomicRanges IRanges mongolite RaggedExperiment rjson S4Vectors SummarizedExperiment]; }; TypeInfo = derive2 { name="TypeInfo"; version="1.47.0"; sha256="1nh15bs814s09cck4829r48n18g0w4haglbn826razjrcj5k46y0"; depends=[]; }; UNDO = derive2 { name="UNDO"; version="1.23.0"; sha256="0csl0kh2ksswmv53cmy10b35ns5l9yg917m99f9pjrnql1n3ciq6"; depends=[Biobase BiocGenerics boot MASS nnls]; }; - Ularcirc = derive2 { name="Ularcirc"; version="0.99.20"; sha256="1i48shbv1cwl1z4czpzc53iyab0d04aqw4w27w9cnvzxqs9fc0aj"; depends=[AnnotationHub Biostrings BSgenome data_table DT GenomeInfoDb GenomeInfoDbData GenomicFeatures gsubfn httpuv mirbase_db moments shiny shinyFiles Sushi yaml]; }; - UniProt_ws = derive2 { name="UniProt.ws"; version="2.21.3"; sha256="1ifzfghq7kk6s3wagjsvc1qz9gldfypgmniiw8pcsm1sji1y31ps"; depends=[AnnotationDbi BiocFileCache BiocGenerics rappdirs RCurl RSQLite]; }; - Uniquorn = derive2 { name="Uniquorn"; version="2.1.0"; sha256="0livhr3kqjhh7s45fahvmshk7f6bbakpx58x16l7vclb1dlzkhii"; depends=[data_table doParallel foreach GenomicRanges IRanges R_utils stringr VariantAnnotation WriteXLS]; }; - VariantAnnotation = derive2 { name="VariantAnnotation"; version="1.27.1"; sha256="1m3bjqif7kwnwwry5zdm74jysq8pnxzkgkdf75bjgw08gg6ykd6j"; depends=[AnnotationDbi Biobase BiocGenerics Biostrings BSgenome DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment XVector zlibbioc]; }; - VariantFiltering = derive2 { name="VariantFiltering"; version="1.17.1"; sha256="0gfvnbs9wh4g3z029b6h5pjky84iz4i9ijmg0kz83v2xybnv1n34"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings BSgenome DT GenomeInfoDb GenomicFeatures GenomicRanges GenomicScores graph Gviz IRanges RBGL Rsamtools S4Vectors shiny shinyjs shinythemes shinyTree SummarizedExperiment VariantAnnotation XVector]; }; + Ularcirc = derive2 { name="Ularcirc"; version="0.99.24"; sha256="0dq4lwx2q6lga1cd9smqrmngvsd26xj83amfhg8192jg6jys9i70"; depends=[AnnotationHub Biostrings BSgenome data_table DT GenomeInfoDb GenomeInfoDbData GenomicFeatures gsubfn httpuv mirbase_db moments shiny shinyFiles Sushi yaml]; }; + UniProt_ws = derive2 { name="UniProt.ws"; version="2.21.4"; sha256="1dsz47zs47mqrijiybs4p1syrf975ff2g1waxpcixbi3jr20gq80"; depends=[AnnotationDbi BiocFileCache BiocGenerics rappdirs RCurl RSQLite]; }; + Uniquorn = derive2 { name="Uniquorn"; version="2.1.4"; sha256="13xgw133kbrmm1idb21hdgm2mn619gvwq1k5bk6nw9m3qcwnp69l"; depends=[data_table doParallel foreach GenomicRanges IRanges R_utils stringr VariantAnnotation WriteXLS]; }; + VanillaICE = derive2 { name="VanillaICE"; version="1.43.4"; sha256="0wdmcmynsrk6ir4sxmgdpvsfdqnb1cgjc3n7vvsa8rsa6b22a15d"; depends=[Biobase BiocGenerics BSgenome_Hsapiens_UCSC_hg18 crlmm data_table foreach GenomeInfoDb GenomicRanges IRanges lattice matrixStats oligoClasses S4Vectors SummarizedExperiment]; }; + VariantAnnotation = derive2 { name="VariantAnnotation"; version="1.27.9"; sha256="0vh50jil9ksjs6d9d9f457v31s8l4rn8cdm0wamj71gcdmp9x2f7"; depends=[AnnotationDbi Biobase BiocGenerics Biostrings BSgenome DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment XVector zlibbioc]; }; + VariantFiltering = derive2 { name="VariantFiltering"; version="1.17.3"; sha256="16jgpja0mxlb2sny6ccnc4aqvgxkl1kna3j8dnn5gyxbd11vzxri"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings BSgenome DT GenomeInfoDb GenomicFeatures GenomicRanges GenomicScores graph Gviz IRanges RBGL Rsamtools S4Vectors shiny shinyjs shinythemes shinyTree SummarizedExperiment VariantAnnotation XVector]; }; VariantTools = derive2 { name="VariantTools"; version="1.23.0"; sha256="1kr4w5c1rwsamb168ahj74f379rk87qldm2mivhn73zq75qrawaf"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicFeatures GenomicRanges IRanges Matrix Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; - Vega = derive2 { name="Vega"; version="1.29.0"; sha256="1zjdhszz65wpjirakkl53a4jqh43z6ryvndf0hxal4gc586gifcd"; depends=[]; }; - VegaMC = derive2 { name="VegaMC"; version="3.19.0"; sha256="1c4vfm2vv2xm6yw2ca57ml9bn6n9ddc2p8pcbxivxkxc8b5n2ysn"; depends=[Biobase biomaRt genoset]; }; - XBSeq = derive2 { name="XBSeq"; version="1.13.0"; sha256="014c96hz2nqjz865xmbhcsqqxxgssd9rn1j1pgmxakkz87mcnvji"; depends=[Biobase DESeq2 dplyr ggplot2 locfit magrittr matrixStats pracma roar]; }; - XDE = derive2 { name="XDE"; version="2.27.0"; sha256="1mls0fx2z2n7izmrmhpv6jg87x36d1j9x6gq51hhkzw5rbq25ng6"; depends=[Biobase BiocGenerics genefilter GeneMeta gtools MergeMaid mvtnorm RColorBrewer siggenes]; }; - XVector = derive2 { name="XVector"; version="0.21.3"; sha256="12p9s5d10cpm86v202gdw6y9gnsmcsny43gv6qnhz48ilzwql4mc"; depends=[BiocGenerics IRanges S4Vectors zlibbioc]; }; + Vega = derive2 { name="Vega"; version="1.29.1"; sha256="04yvxrv7m78dxg2k7pjcz6hz4clywb2lrldqs6pixyli2ifal8fq"; depends=[]; }; + VegaMC = derive2 { name="VegaMC"; version="3.19.1"; sha256="1dah8j41qd9ym00nlv8k0kpz3vsl7y3f6h4nyzv8bwa3nf9ip9qy"; depends=[Biobase biomaRt genoset]; }; + Wrench = derive2 { name="Wrench"; version="0.99.10"; sha256="1wm4zrh8wiyvjw246a4xwc3y278qyyvgx02n7kgnwznzg6wvh05s"; depends=[limma locfit matrixStats]; }; + XBSeq = derive2 { name="XBSeq"; version="1.13.1"; sha256="1dkwk181glpqq3g6ks5mpx39p106a8vkhky40hh7zny1pdycbzzh"; depends=[Biobase DESeq2 dplyr ggplot2 locfit magrittr matrixStats pracma roar]; }; + XDE = derive2 { name="XDE"; version="2.27.1"; sha256="1kj5wdn3w49zzi43hp8qs17v173nlgf215hm5pjy6l6pgvjjffjm"; depends=[Biobase BiocGenerics genefilter GeneMeta gtools MergeMaid mvtnorm RColorBrewer siggenes]; }; + XINA = derive2 { name="XINA"; version="0.99.13"; sha256="1vyawdy8z1lisnpfdy6rxmkbjxzs9dzb5f8i6wqiyx726z68fcpc"; depends=[alluvial Biobase ggplot2 gridExtra igraph mclust plyr STRINGdb]; }; + XVector = derive2 { name="XVector"; version="0.21.4"; sha256="1zb01pi6dm424ky95sli7h0a2qy2px6as0bz9ic48b3nwd7az2mn"; depends=[BiocGenerics IRanges S4Vectors zlibbioc]; }; YAPSA = derive2 { name="YAPSA"; version="1.7.0"; sha256="1ny51v4papa067aylq7njyi2f17yp44y955szpark0lj0p759vjb"; depends=[circlize ComplexHeatmap corrplot dendextend GenomeInfoDb GenomicRanges GetoptLong ggplot2 gridExtra gtrellis KEGGREST lsei PMCMR reshape2 SomaticSignatures VariantAnnotation]; }; a4 = derive2 { name="a4"; version="1.29.0"; sha256="0anj0gkbiccvb93xqzi7k1xxw2kqlwcf82pf4pqadc2fvmb1yfd7"; depends=[a4Base a4Classif a4Core a4Preproc a4Reporting]; }; a4Base = derive2 { name="a4Base"; version="1.29.0"; sha256="03lnbfg94xwrib8g40y4bazp122zy9nnpv4v1m18wjc10hi7z7qp"; depends=[a4Core a4Preproc annaffy AnnotationDbi Biobase genefilter glmnet gplots limma mpm multtest]; }; @@ -784,106 +839,117 @@ in with self; { a4Preproc = derive2 { name="a4Preproc"; version="1.29.0"; sha256="1yhdsx23rd1mihj18jwvb7rl6kgyvbh4a75lsv0faqvsh9bk2k77"; depends=[AnnotationDbi]; }; a4Reporting = derive2 { name="a4Reporting"; version="1.29.0"; sha256="1m79clrlf0f5f108vyamy2ia8sbxi3mm2kf8ckhbbsr6qgmnqcsb"; depends=[annaffy xtable]; }; aCGH = derive2 { name="aCGH"; version="1.59.0"; sha256="17nqy2sgkvjzhm3l8ypg93i7yzsniy536b2wz7rd6km52spldp7r"; depends=[Biobase cluster multtest survival]; }; + abseqR = derive2 { name="abseqR"; version="0.99.11"; sha256="1fzcchzxzpmiv2az8cg7nyx4pxkabfviyzm2nyx36kbyl4mfhwbb"; depends=[BiocParallel BiocStyle circlize flexdashboard ggcorrplot ggdendro ggplot2 gridExtra knitr plotly plyr png RColorBrewer reshape2 rmarkdown stringr vegan VennDiagram]; }; acde = derive2 { name="acde"; version="1.11.0"; sha256="18551wkanalxk32g37j2yg766qgddsxid0lzv2rb61gqjb7qrmpa"; depends=[boot]; }; adSplit = derive2 { name="adSplit"; version="1.51.0"; sha256="1azczbx6w17a1awwpfc1bbgx14562mr41mgii7skm9r8jb9pxn4n"; depends=[AnnotationDbi Biobase cluster GO_db KEGG_db multtest]; }; - adaptest = derive2 { name="adaptest"; version="1.1.0"; sha256="0ddrkkh8mh3fq65dz6rrxm9wykyalwa90jf5vb0kllgjd3n6hvk8"; depends=[calibrate origami SummarizedExperiment tmle]; }; - affxparser = derive2 { name="affxparser"; version="1.53.0"; sha256="1n81df9451r3pixakgjwi4zqna7gp0s9v6qrjpyw71294swi169f"; depends=[]; }; - affy = derive2 { name="affy"; version="1.59.0"; sha256="1z57jn6l79jwks0j64m63s5h4kxdxg08qjmi646765xlf3xi746j"; depends=[affyio Biobase BiocGenerics BiocInstaller preprocessCore zlibbioc]; }; + adaptest = derive2 { name="adaptest"; version="1.1.1"; sha256="02dlhbnfl11x8hpampzz2d76i958k6lm4d3yc4kicpdsl5vmv6mk"; depends=[calibrate origami SummarizedExperiment tmle]; }; + affxparser = derive2 { name="affxparser"; version="1.53.2"; sha256="15i7rnwhc602y2c2i0h07z7fw29ynjq0jw1hqsjinw5df4afnxj7"; depends=[]; }; + affy = derive2 { name="affy"; version="1.59.1"; sha256="08fppshnnj1rxjd0kkmlrsz9nhqllzbzha5r1jbcly1f3dgy0799"; depends=[affyio Biobase BiocGenerics BiocManager preprocessCore zlibbioc]; }; affyContam = derive2 { name="affyContam"; version="1.39.0"; sha256="1mh1yqrdh47ggqibgghnlmjfq46n0w4q1hdji7cv1js6kry7wqcf"; depends=[affy affydata Biobase]; }; affyILM = derive2 { name="affyILM"; version="1.33.0"; sha256="0q41aznln8kngmv0q6036zvzbbk5sw46lhmss3npk7r6q0ryyvwr"; depends=[affxparser affy Biobase gcrma]; }; affyPLM = derive2 { name="affyPLM"; version="1.57.0"; sha256="17vy0knf0vb3l824q2ib4hp0izw4s8phbjalsrzbwvmm7gg25xv7"; depends=[affy Biobase BiocGenerics gcrma preprocessCore zlibbioc]; }; affyPara = derive2 { name="affyPara"; version="1.41.0"; sha256="1j81wl9ivx24jag4jnnv6viblpqba72c72nmcxs60cdqq44vs87h"; depends=[affy affyio aplpack snow vsn]; }; affyQCReport = derive2 { name="affyQCReport"; version="1.59.0"; sha256="16sz9rii38vph2qiplab0f7fakd2vl77df543mfiykk3w5f0why2"; depends=[affy affyPLM Biobase genefilter lattice RColorBrewer simpleaffy xtable]; }; affycomp = derive2 { name="affycomp"; version="1.57.0"; sha256="167bgzq82zsl2mdgzai95msh188j10hwrmp4bqab5qh9h2s8phvb"; depends=[Biobase]; }; - affycoretools = derive2 { name="affycoretools"; version="1.53.2"; sha256="10zr09sqg6yf5f22qy0157qp03c479lxcdlippxawsq3x5dag533"; depends=[affy AnnotationDbi Biobase BiocGenerics DBI edgeR gcrma ggplot2 GOstats gplots hwriter lattice limma oligoClasses ReportingTools RSQLite S4Vectors xtable]; }; + affycoretools = derive2 { name="affycoretools"; version="1.53.4"; sha256="13vacl5a4rnizn6pgchyd8xxpf3sd4cdwxfyvmslwaci4dh0mlk5"; depends=[affy AnnotationDbi Biobase BiocGenerics DBI edgeR gcrma ggplot2 GOstats gplots hwriter lattice limma oligoClasses ReportingTools RSQLite S4Vectors xtable]; }; affyio = derive2 { name="affyio"; version="1.51.0"; sha256="1p10bycid4dlhxhllalffywrc06xj1qjzs9f9fvj1y1yzj3xgmqz"; depends=[zlibbioc]; }; - affylmGUI = derive2 { name="affylmGUI"; version="1.55.2"; sha256="0i0psf8rp2ars1ibb13vchmgapb8mf1smmabgb54c8gmd3lzx6js"; depends=[affy affyio affyPLM BiocGenerics BiocInstaller gcrma limma R2HTML tkrplot xtable]; }; + affylmGUI = derive2 { name="affylmGUI"; version="1.55.3"; sha256="0x6f92w8gqk2vs2p3walg2f0z0vx0gkiyz1jpnq01lz9zklwvhq9"; depends=[affy affyio affyPLM BiocGenerics BiocManager gcrma limma R2HTML tkrplot xtable]; }; affypdnn = derive2 { name="affypdnn"; version="1.55.0"; sha256="11gwlr0ghw5c0977sgyhvghb953cgppp3vz3g1gfd3mdgkckvpqw"; depends=[affy]; }; agilp = derive2 { name="agilp"; version="3.13.0"; sha256="1z7bxkdmqpz4kn1m2z91knnp36mp7z5awzj6qqwj7xwydc85m8np"; depends=[]; }; alpine = derive2 { name="alpine"; version="1.7.0"; sha256="0d5r1izkx7lvl9f7sy0sy97mpvxaj05010vxmgw0c5yfpzzi3hz1"; depends=[Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph IRanges RBGL Rsamtools S4Vectors speedglm stringr SummarizedExperiment]; }; alsace = derive2 { name="alsace"; version="1.17.0"; sha256="0p17f29n1z3n4x2rpv4hja10aq5349653ra4hwl5fbli3fa0ww43"; depends=[ALS ptw]; }; altcdfenvs = derive2 { name="altcdfenvs"; version="2.43.0"; sha256="1md8rb732bpsxs1r1mgvd9f98ixg596rn28pw6pq8bl8hj5jh3l9"; depends=[affy Biobase BiocGenerics Biostrings hypergraph makecdfenv S4Vectors]; }; - ampliQueso = derive2 { name="ampliQueso"; version="1.19.0"; sha256="0nvwvvrm41vi289zp86s4yb0b6z9i54gq43vmvk1jh556rg1wsh6"; depends=[DESeq doParallel edgeR foreach genefilter ggplot2 gplots knitr rgl rnaSeqMap samr statmod VariantAnnotation xtable]; }; - amplican = derive2 { name="amplican"; version="1.3.1"; sha256="16h9py6yl6nb2203wk00g0lvgkic4f9xdwzrxdq9rk1mlnmjbyd2"; depends=[BiocGenerics BiocParallel Biostrings clusterCrit data_table dplyr GenomeInfoDb GenomicRanges ggforce ggplot2 ggthemes gridExtra gtable IRanges knitr Matrix matrixStats rmarkdown S4Vectors ShortRead stringr waffle]; }; - anamiR = derive2 { name="anamiR"; version="1.9.0"; sha256="07xldx4dqc3s5vrankh1swg8a4hy50ihiw5wx5ndxvkpig8sspr8"; depends=[agricolae DBI DESeq2 gage gplots limma lumi RMySQL S4Vectors SummarizedExperiment]; }; + ampliQueso = derive2 { name="ampliQueso"; version="1.19.4"; sha256="0nznv4cdjxr1lcr4cf2jpipcqn9s90kd97rqnv5kild2yv8srbhq"; depends=[DESeq doParallel edgeR foreach genefilter ggplot2 gplots knitr rgl rnaSeqMap samr statmod VariantAnnotation xtable]; }; + amplican = derive2 { name="amplican"; version="1.3.5"; sha256="0yf9wjgg22ry89cs9in66gwfana8c9cqaq7anfkpa3ng27llakd7"; depends=[BiocGenerics BiocParallel Biostrings clusterCrit data_table dplyr GenomeInfoDb GenomicRanges ggforce ggplot2 ggthemes gridExtra gtable IRanges knitr Matrix matrixStats rmarkdown S4Vectors ShortRead stringr waffle]; }; + anamiR = derive2 { name="anamiR"; version="1.9.2"; sha256="0l0lgan8zs04dyk972prvdng4xb8rig5g9rv55z1pplxvla4grqk"; depends=[agricolae DBI DESeq2 gage gplots limma lumi RMySQL S4Vectors SummarizedExperiment]; }; annaffy = derive2 { name="annaffy"; version="1.53.0"; sha256="0z97liznk6by9a7klw0wirpchd9n57ycsf80xsprnlgy60slypvc"; depends=[AnnotationDbi Biobase DBI GO_db KEGG_db]; }; annmap = derive2 { name="annmap"; version="1.23.0"; sha256="0m74p8zrqhyfgpbqf4s98174y7gz9p1nh9q272xbsqn8ckdk8c0a"; depends=[Biobase BiocGenerics DBI digest genefilter GenomicRanges IRanges lattice RMySQL Rsamtools]; }; - annotate = derive2 { name="annotate"; version="1.59.0"; sha256="0m384l8asvl2kswaar408w08yps7n822pfsxqby8igblrfzjgxjq"; depends=[AnnotationDbi Biobase BiocGenerics DBI RCurl XML xtable]; }; + annotate = derive2 { name="annotate"; version="1.59.1"; sha256="016sgwqd0s3jhpqw4056y0xa7p1jc99i8b7biq754vzzbapjvyb0"; depends=[AnnotationDbi Biobase BiocGenerics DBI RCurl XML xtable]; }; annotationTools = derive2 { name="annotationTools"; version="1.55.0"; sha256="18rxyi7sx93l52agbxnla1b7gn2bk3fpby0qj224nqinydjxkmjj"; depends=[Biobase]; }; - annotatr = derive2 { name="annotatr"; version="1.7.1"; sha256="0ccad82zrdy028dyycsvbcdijh2xl1ibjqz36wfnnnipxwc9fq89"; depends=[AnnotationDbi AnnotationHub dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges readr regioneR reshape2 rtracklayer S4Vectors]; }; + annotatr = derive2 { name="annotatr"; version="1.7.2"; sha256="0q18fmb7wbbhqm3rwgf3d3cm9rpryrybv35jglsjsa3ca7y0550d"; depends=[AnnotationDbi AnnotationHub dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges readr regioneR reshape2 rtracklayer S4Vectors]; }; anota = derive2 { name="anota"; version="1.29.0"; sha256="1najgyj4qn9954jxbq0c4psarsq8mrg6fz0w3p9vmcm68l8lz3ig"; depends=[multtest qvalue]; }; - anota2seq = derive2 { name="anota2seq"; version="1.3.0"; sha256="0kr5wm6sirkycp0f017vqialqzzjadyfkm2fpv2zj6v8acnv3704"; depends=[DESeq2 edgeR limma multtest qvalue RColorBrewer SummarizedExperiment]; }; + anota2seq = derive2 { name="anota2seq"; version="1.3.1"; sha256="1gp5f852kiz1ck19iasvkm1idgdcv636jdkmfp4j76r7k3vjzk36"; depends=[DESeq2 edgeR limma multtest qvalue RColorBrewer SummarizedExperiment]; }; antiProfiles = derive2 { name="antiProfiles"; version="1.21.0"; sha256="166mx0y4b3j1vd3daxr9wd48d007qh1sj1vjssjfails6j4sy9lh"; depends=[locfit matrixStats]; }; apComplex = derive2 { name="apComplex"; version="2.47.0"; sha256="0pqgrzfvljvinsalki5sc31c38k959g5gzag7sn33iilqw7s8grx"; depends=[graph org_Sc_sgd_db RBGL Rgraphviz]; }; - apeglm = derive2 { name="apeglm"; version="1.3.0"; sha256="1y9g9s68fqiinr2lwx10s5m533ccgbpzh4wqlf7nbjw696vshjnb"; depends=[emdbook GenomicRanges Rcpp RcppEigen RcppNumerical SummarizedExperiment]; }; + apeglm = derive2 { name="apeglm"; version="1.3.2"; sha256="1w7g7vfzqs109b2bihw7vgsyxrc65j31zlxf4v9bn5y144hzrn2j"; depends=[emdbook GenomicRanges Rcpp RcppEigen RcppNumerical SummarizedExperiment]; }; + appreci8R = derive2 { name="appreci8R"; version="0.99.5"; sha256="0jr8qfrxdigddw1nwlzgqs7whzvs5h1c8xzmlzrbwrzn3ymgka54"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 COSMIC_67 DT GenomicFeatures GenomicRanges GenomicScores Homo_sapiens IRanges MafDb_1Kgenomes_phase3_hs37d5 MafDb_ESP6500SI_V2_SSA137_hs37d5 MafDb_ExAC_r1_0_hs37d5 MafDb_gnomADex_r2_0_1_hs37d5 openxlsx PolyPhen_Hsapiens_dbSNP131 rentrez Rsamtools rsnps S4Vectors seqinr shiny shinyjs SIFT_Hsapiens_dbSNP137 SNPlocs_Hsapiens_dbSNP144_GRCh37 stringr SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation XtraSNPlocs_Hsapiens_dbSNP144_GRCh37]; }; + aroma_light = derive2 { name="aroma.light"; version="3.11.2"; sha256="0m03zkil79axvrmvaaimlv5pas6h19ylc4l5pm7f2xnc5150n8vp"; depends=[matrixStats R_methodsS3 R_oo R_utils]; }; arrayMvout = derive2 { name="arrayMvout"; version="1.39.0"; sha256="1yrqx8vkbhwsdh0x3ig5wmy3ynx56154wgc69hzssvw38jdlp9vy"; depends=[affy affyContam Biobase lumi mdqc parody simpleaffy]; }; arrayQuality = derive2 { name="arrayQuality"; version="1.59.0"; sha256="1nhavhn4vnxvmj2hw8qlrnbyp3nsv3m90qcj20ijiv85jkr10mpa"; depends=[gridBase hexbin limma marray RColorBrewer]; }; - arrayQualityMetrics = derive2 { name="arrayQualityMetrics"; version="3.37.0"; sha256="0bd78q63gsnh0bfspif6zgkp77wf634xcq6h53ka96qs7d98nxcv"; depends=[affy affyPLM beadarray Biobase Cairo genefilter gridSVG Hmisc hwriter lattice latticeExtra limma RColorBrewer setRNG vsn XML]; }; + arrayQualityMetrics = derive2 { name="arrayQualityMetrics"; version="3.37.1"; sha256="1pn3q37dmx2drqiq9k1y0s9n9hmh5njp70ljgkf4z83a3wwgz6fk"; depends=[affy affyPLM beadarray Biobase Cairo genefilter gridSVG Hmisc hwriter lattice latticeExtra limma RColorBrewer setRNG vsn XML]; }; + artMS = derive2 { name="artMS"; version="0.99.101"; sha256="0id199zy5cmbjap8zwp2if5hnr20cbsk9fsvfvkvg29pa01bi3x0"; depends=[AnnotationDbi biomaRt bit64 circlize cluster ComplexHeatmap corrplot data_table dplyr factoextra FactoMineR getopt ggdendro ggplot2 ggrepel gplots gProfileR limma MSstats openxlsx org_Hs_eg_db org_Mm_eg_db PerformanceAnalytics pheatmap plotly plyr RColorBrewer reshape2 seqinr stringr tidyr UpSetR VennDiagram yaml]; }; attract = derive2 { name="attract"; version="1.33.2"; sha256="15mrqxcqflm3f77s336dyh8q57ipr27ca81aap6pwfxgpqykay49"; depends=[AnnotationDbi Biobase cluster GOstats KEGGREST limma org_Hs_eg_db reactome_db]; }; bacon = derive2 { name="bacon"; version="1.9.0"; sha256="018082c3g5cdi3i1z1q26cq4v1f529d1c2q92p6qyzblcs8m2j2m"; depends=[BiocParallel ellipse ggplot2]; }; - ballgown = derive2 { name="ballgown"; version="2.13.0"; sha256="16x4bh9wdqw5isia1vwi8kynlfaxvvc808lnbdkz8964rfxn317i"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges limma RColorBrewer rtracklayer S4Vectors sva]; }; - bamsignals = derive2 { name="bamsignals"; version="1.13.1"; sha256="1jyf9arivqk42zsj9k3fgjvz7d8ixlm2irsac4vkfjvr8nrfssyr"; depends=[BiocGenerics GenomicRanges IRanges Rcpp Rhtslib zlibbioc]; }; - banocc = derive2 { name="banocc"; version="1.5.0"; sha256="1i86y34yhcaadl7ans6ypcr5yprqlnl4fl0bmr1k28pd8knwgq70"; depends=[coda mvtnorm rstan stringr]; }; + ballgown = derive2 { name="ballgown"; version="2.13.1"; sha256="16464any97gpy6jmg61w58cryfd4z0c7qrq29vb28pbfxiwv4mmz"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges limma RColorBrewer rtracklayer S4Vectors sva]; }; + bamsignals = derive2 { name="bamsignals"; version="1.13.2"; sha256="1w8jqk8iz63cfhnbnf2r4k15052kp2cyq6da9zl4my9kc237nr14"; depends=[BiocGenerics GenomicRanges IRanges Rcpp Rhtslib zlibbioc]; }; + banocc = derive2 { name="banocc"; version="1.5.2"; sha256="1sdj9gd43a7pz8sbzm0l9d7ifsmdpgksq6f52zs06blsy31aca99"; depends=[coda mvtnorm rstan stringr]; }; basecallQC = derive2 { name="basecallQC"; version="1.5.0"; sha256="1g6hisqbg41kwz16iw7ai2rbw6hvndv560m7jxa85cm3kl9s5dxh"; depends=[data_table dplyr DT ggplot2 knitr lazyeval magrittr prettydoc raster rmarkdown ShortRead stringr tidyr XML yaml]; }; + bayNorm = derive2 { name="bayNorm"; version="0.99.19"; sha256="1vk4rlc9vchlvidhykqb75ljxhy0v9pbm2jdd5md4dswwq74psad"; depends=[BB BiocParallel doSNOW fitdistrplus foreach iterators locfit MASS Rcpp RcppArmadillo RcppProgress SingleCellExperiment SummarizedExperiment]; }; baySeq = derive2 { name="baySeq"; version="2.15.2"; sha256="01iv53gsrqm0ia44dzirdfpfqdrav46xxwml7xmb6cfgafx118qd"; depends=[abind edgeR GenomicRanges]; }; - bcSeq = derive2 { name="bcSeq"; version="1.3.0"; sha256="1l1zpf1pyf7r3qqif6f4fjzxrvcj18yz8ggads1q98z74nrzwgwq"; depends=[Biostrings Matrix Rcpp]; }; - beachmat = derive2 { name="beachmat"; version="1.3.2"; sha256="0mr1a8zcrrfs2klavq4jzw5lpcv64l3rvjpqx78jdhdvrfd0fi99"; depends=[DelayedArray HDF5Array Rcpp rhdf5 Rhdf5lib]; }; - beadarray = derive2 { name="beadarray"; version="2.31.0"; sha256="1kf6fzq11mr49xav1ivz366vpsjaqhi1l0k4751k79s6rr30m6d6"; depends=[AnnotationDbi BeadDataPackR Biobase BiocGenerics GenomicRanges ggplot2 illuminaio IRanges limma reshape2]; }; + bcSeq = derive2 { name="bcSeq"; version="1.3.3"; sha256="14lmv9zlrh1xqdm0d0xyfi2rbjk8h3hkiaq74mbrygcgy8i9n77b"; depends=[Biostrings Matrix Rcpp]; }; + beachmat = derive2 { name="beachmat"; version="1.3.11"; sha256="06nb379rwpfb216qizxmmviljnm92vw52q9qlba8hsgrn189fbzl"; depends=[BiocGenerics DelayedArray HDF5Array Rcpp rhdf5 Rhdf5lib]; }; + beadarray = derive2 { name="beadarray"; version="2.31.1"; sha256="1vnhdw4gcv35xbj6s2rhwf4w90ghpmyjqcp5r4hnh3f829921xvf"; depends=[AnnotationDbi BeadDataPackR Biobase BiocGenerics GenomicRanges ggplot2 illuminaio IRanges limma reshape2]; }; beadarraySNP = derive2 { name="beadarraySNP"; version="1.47.0"; sha256="1x4byqw6d2xy4db6pgbadsdwakw39lvw58dckijk2fwgrimzipn0"; depends=[Biobase quantsmooth]; }; bgafun = derive2 { name="bgafun"; version="1.43.0"; sha256="02pv0b72m7xy2hqjdhz881qkp83api8lwbjngq7v29xhp7mpmgq3"; depends=[ade4 made4 seqinr]; }; bgx = derive2 { name="bgx"; version="1.47.0"; sha256="1vh2hhjsfyx8laq1xym7zaxsakgwcp0ybha6xxdc18mwlwr3q412"; depends=[affy Biobase gcrma]; }; - bigmelon = derive2 { name="bigmelon"; version="1.7.0"; sha256="0r753dyi2ls6dy99zh519mvqqc9pr8vy16pyvmpmpvxg8bj1hx90"; depends=[Biobase BiocGenerics gdsfmt GEOquery methylumi minfi wateRmelon]; }; + bigmelon = derive2 { name="bigmelon"; version="1.7.4"; sha256="10sypnsvj561v9fdii047xvy2hamljss3rdw89b5l478flh5h3bx"; depends=[Biobase BiocGenerics gdsfmt GEOquery methylumi minfi wateRmelon]; }; bigmemoryExtras = derive2 { name="bigmemoryExtras"; version="1.29.0"; sha256="0cxbd4zdvrpqycnvgw7svvngknscc4s9ycqp3csa8v1gpc9bj9cd"; depends=[bigmemory]; }; - bioCancer = derive2 { name="bioCancer"; version="1.9.0"; sha256="131a7la949ckklcbsr9rbm99nhaz7zlbk6ck7lhc8n55z5lig30d"; depends=[AlgDesign AnnotationFuncs Biobase cgdsr clusterProfiler DiagrammeR DOSE dplyr DT geNetClassifier htmlwidgets org_Hs_eg_db plyr r_import radiant_data reactome_db ReactomePA shiny shinythemes tibble visNetwork XML]; }; + bioCancer = derive2 { name="bioCancer"; version="1.9.8"; sha256="0dzsa1v2w8x73vz41h1h7gfv6yk1csffmn453cpzvvy2sy6v7pls"; depends=[AlgDesign AnnotationFuncs Biobase cgdsr clusterProfiler DiagrammeR DOSE dplyr DT geNetClassifier htmlwidgets org_Hs_eg_db plyr r_import radiant_data reactome_db ReactomePA shiny shinythemes tibble visNetwork XML]; }; bioDist = derive2 { name="bioDist"; version="1.53.0"; sha256="04pazvkmw36ghicyzbqvb7rq3kvpw7qrj01k7gddrg4c1dc2rdd2"; depends=[Biobase KernSmooth]; }; - bioassayR = derive2 { name="bioassayR"; version="1.19.0"; sha256="1c2xjbh0lnik1dn2iwicpd0y1swbnnz1zac1vlaabhmxdw2g1h0n"; depends=[BiocGenerics ChemmineR DBI Matrix rjson RSQLite XML]; }; - biobroom = derive2 { name="biobroom"; version="1.13.0"; sha256="1csxi4f7d0lg1j9sjnmp089pma65pq1k2yyimrh0vl8yw92zlns6"; depends=[Biobase broom dplyr tidyr]; }; + bioassayR = derive2 { name="bioassayR"; version="1.19.3"; sha256="1p7akwrsa22qrngsyksin8xxldfmlfp63yypgsqackj1qni1p4gs"; depends=[BiocGenerics ChemmineR DBI Matrix rjson RSQLite XML]; }; + biobroom = derive2 { name="biobroom"; version="1.13.2"; sha256="02mgb1rqdn616xgs1gjfmn84z6565v41m9zg16m6waba8p348chn"; depends=[Biobase broom dplyr tidyr]; }; biocGraph = derive2 { name="biocGraph"; version="1.43.0"; sha256="1ps4r6rkffmqisfz5wip981r3dbx57n3r1j6whw9l6dbs043fjql"; depends=[BiocGenerics geneplotter graph Rgraphviz]; }; - biocViews = derive2 { name="biocViews"; version="1.49.4"; sha256="1mgf21zbq8pm3iw8fsw700wzdjca1kf575xayaibblfsxcd1y59q"; depends=[Biobase graph RBGL RCurl RUnit XML]; }; - biomaRt = derive2 { name="biomaRt"; version="2.37.3"; sha256="087vd0csab9ph21ijahjj66wpwnbsd48mvym12y7wrw71rvincw2"; depends=[AnnotationDbi httr progress RCurl stringr XML]; }; - biomformat = derive2 { name="biomformat"; version="1.9.0"; sha256="1n8dwxkd6k0nvksg6dpcq84da9y9mjsmbn62362ja2kjgzqkh80x"; depends=[jsonlite Matrix plyr rhdf5]; }; + biocViews = derive2 { name="biocViews"; version="1.49.10"; sha256="1dzd4ag0m2cprih66787aqgmm6fn68w6r7l5x6palsgix382m4m2"; depends=[Biobase graph RBGL RCurl RUnit XML]; }; + biomaRt = derive2 { name="biomaRt"; version="2.37.9"; sha256="196glcsp4cp0wfw2hrlvpxrx9r7ncfd775gfpmy298xldsxqf319"; depends=[AnnotationDbi httr progress RCurl stringr XML]; }; + biomformat = derive2 { name="biomformat"; version="1.9.1"; sha256="1kjk6agznq63a48jhj2yxkxr1nmwjlhb4zwmh1i1aawhzk1d04z1"; depends=[jsonlite Matrix plyr rhdf5]; }; biomvRCNS = derive2 { name="biomvRCNS"; version="1.21.0"; sha256="193cfwknlm28pm5n7ydmrnaczw7xisiz07l29jyk0h05jrmrvna0"; depends=[GenomicRanges Gviz IRanges mvtnorm]; }; biosigner = derive2 { name="biosigner"; version="1.9.0"; sha256="0v33vksq23byv5ybkb0mmvcb5fag3ghy9gcvb9aj16i7r0bs61ql"; depends=[Biobase e1071 randomForest ropls]; }; biosvd = derive2 { name="biosvd"; version="2.17.0"; sha256="19l7mc1pbsbbzsb635iiqb778xq1lrlnmsnyd324471c3rnb1yn7"; depends=[Biobase BiocGenerics NMF]; }; biotmle = derive2 { name="biotmle"; version="1.5.1"; sha256="0ihc1g60j1lkz3na23vvpd9c8xcz0p8wm5ksa6169zxjgqb90mmv"; depends=[BiocGenerics BiocParallel doFuture dplyr future ggplot2 ggsci limma S4Vectors SummarizedExperiment superheat tmle]; }; - biovizBase = derive2 { name="biovizBase"; version="1.29.0"; sha256="0cmfigqy4ajrsdgwiwnwkhnznk14phq2di7yijjr0n3whk2xbvp4"; depends=[AnnotationDbi AnnotationFilter BiocGenerics Biostrings dichromat ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges Hmisc IRanges RColorBrewer Rsamtools S4Vectors scales SummarizedExperiment VariantAnnotation]; }; + biovizBase = derive2 { name="biovizBase"; version="1.29.2"; sha256="0xhwnjjwv41wsn3knl3pyswdwnrmsj49nwrxpmdlmivgqz6f0kz7"; depends=[AnnotationDbi AnnotationFilter BiocGenerics Biostrings dichromat ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges Hmisc IRanges RColorBrewer rlang Rsamtools S4Vectors scales SummarizedExperiment VariantAnnotation]; }; birta = derive2 { name="birta"; version="1.25.0"; sha256="0c8rvf63cq6rzax2vhgk4y2xjgylnygihgv8yw7iznhpvqxxqm5g"; depends=[Biobase limma MASS]; }; birte = derive2 { name="birte"; version="1.17.0"; sha256="14xgvv12457yai92vvbpnc2fn4bnc129nrpwxl4kck09mh7kzfii"; depends=[Biobase glmnet limma MASS nem Rcpp RcppArmadillo]; }; - blima = derive2 { name="blima"; version="1.15.0"; sha256="160vdrinkq6pw851sxc9k0ybhh1ms0zd3jnxri6gdysbk2c2da2n"; depends=[beadarray Biobase BiocGenerics Rcpp]; }; + blima = derive2 { name="blima"; version="1.15.1"; sha256="06j3ibg62kxv0qvn1rmals6y6g1h8a3y1icvypjanl2r96l3h8hv"; depends=[beadarray Biobase BiocGenerics Rcpp]; }; bnbc = derive2 { name="bnbc"; version="1.3.0"; sha256="07jzc55x31zn5ak5rlpc0xpqgnkl03vhpdrd8ay12n450zggd77q"; depends=[BiocGenerics EBImage GenomeInfoDb GenomicRanges IRanges matrixStats preprocessCore Rcpp S4Vectors SummarizedExperiment sva]; }; + brainImageR = derive2 { name="brainImageR"; version="0.99.13"; sha256="0yfp5z27iawr9m1avmlk6fwyxfzh030j6a6amz50zssmxx3girld"; depends=[BiocGenerics ExperimentHub ggplot2 gridExtra randomForest RColorBrewer testthat]; }; branchpointer = derive2 { name="branchpointer"; version="1.7.0"; sha256="0ii7y3as43g7yp2qbzxv0bz66ayng8pxgk95303fp2l2akjb7gnx"; depends=[biomaRt Biostrings BSgenome_Hsapiens_UCSC_hg38 caret cowplot data_table gbm GenomeInfoDb GenomicRanges ggplot2 IRanges kernlab plyr rtracklayer S4Vectors stringr]; }; + breakpointR = derive2 { name="breakpointR"; version="0.99.11"; sha256="1d6s3zvr0sjif63czd8z0d67ysdvjyfcqfcvcjzwcv158h59h7vj"; depends=[BiocGenerics breakpointRdata cowplot doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gtools IRanges Rsamtools S4Vectors]; }; bridge = derive2 { name="bridge"; version="1.45.0"; sha256="11rqvigax6j1bqj1nyf4x6ssmqi0892m1rhak1wz3xcj4adb8vwz"; depends=[rama]; }; - bsseq = derive2 { name="bsseq"; version="1.17.0"; sha256="0mx9x996lhq63la9wkmygvdk8s215j3j833vx738prncc5wkkl4v"; depends=[Biobase BiocGenerics data_table DelayedArray DelayedMatrixStats GenomeInfoDb GenomicRanges gtools HDF5Array IRanges limma locfit permute R_utils S4Vectors scales SummarizedExperiment]; }; + bsseq = derive2 { name="bsseq"; version="1.17.7"; sha256="1ch766hhahn70nsi2a0r6438q5b3b3z1a7l65ldbhr8c3w4x1wp3"; depends=[beachmat Biobase BiocGenerics BiocParallel Biostrings BSgenome data_table DelayedArray DelayedMatrixStats GenomeInfoDb GenomicRanges gtools HDF5Array IRanges limma locfit permute R_utils Rcpp Rhdf5lib S4Vectors scales SummarizedExperiment]; }; bumphunter = derive2 { name="bumphunter"; version="1.23.0"; sha256="1dn6z7q8k54vd59dqirvdy6048ywa3c4njc2vrja8f5i2lsvfwc8"; depends=[AnnotationDbi BiocGenerics doRNG foreach GenomeInfoDb GenomicFeatures GenomicRanges IRanges iterators limma locfit matrixStats S4Vectors]; }; + cTRAP = derive2 { name="cTRAP"; version="0.99.12"; sha256="0wg8phma29ijgfwp992l3dcqb64q7fzvamsiphrr3swn5dzs8kbv"; depends=[biomaRt cowplot data_table fgsea ggplot2 httr limma pbapply piano plyr R_utils readr rhdf5]; }; caOmicsV = derive2 { name="caOmicsV"; version="1.11.0"; sha256="0lxlk5wlfna009k2jk8kgj61ks3hfcx1lvpymidb2yjx0kk2n7sg"; depends=[bc3net igraph]; }; - canceR = derive2 { name="canceR"; version="1.15.0"; sha256="08iz3lih2rhnwd31pfq6ra6kwwgmmggrfrcqsivnp49ni19gy0sq"; depends=[Biobase cgdsr circlize Formula geNetClassifier GSEABase GSEAlm phenoTest plyr rpart RUnit survival tcltk2 tkrplot]; }; + canceR = derive2 { name="canceR"; version="1.15.3"; sha256="03ib2ydmb26zc91hwy5w2sysvqay1087yjs03ki83spr4hh4hqmx"; depends=[Biobase cgdsr circlize Formula geNetClassifier GSEABase GSEAlm phenoTest plyr rpart RUnit survival tcltk2 tkrplot]; }; cancerclass = derive2 { name="cancerclass"; version="1.25.0"; sha256="059nw8y6319m8k3i4l4crbydia2xz8v3dzc1dgj0hz6v3gfkxh8v"; depends=[binom Biobase]; }; casper = derive2 { name="casper"; version="2.15.0"; sha256="129grx8bb2scjsvcqgyxigsw1n36miqbpf8val5yzm0lv9zwv24s"; depends=[Biobase BiocGenerics coda EBarrays gaga GenomeInfoDb GenomicFeatures GenomicRanges gtools IRanges limma mgcv Rsamtools rtracklayer S4Vectors sqldf survival VGAM]; }; - categoryCompare = derive2 { name="categoryCompare"; version="1.25.0"; sha256="16zmqs8mf8lhsnlqfna40bq46v2zgqn823y98ycnx4c1m1l2jmk3"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category colorspace GOstats graph GSEABase hwriter RCy3]; }; - cbaf = derive2 { name="cbaf"; version="1.3.0"; sha256="19zy92jk8g5dzh5r2hpdc96yjgh0plqzn189giww65sq6hgiqvl2"; depends=[BiocFileCache cgdsr genefilter gplots RColorBrewer xlsx]; }; - ccfindR = derive2 { name="ccfindR"; version="1.1.1"; sha256="1xp960q6jcskganvygxkpr9may680s30p57fjm5x625z4vwvd8r8"; depends=[ape BiocGenerics gtools Matrix RColorBrewer Rtsne S4Vectors SingleCellExperiment SummarizedExperiment]; }; + categoryCompare = derive2 { name="categoryCompare"; version="1.25.1"; sha256="1qxfkqzyq6q4imhi517bbxn785i0qzwcy4ac68k1iw0c8frcn1hg"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category colorspace GOstats graph GSEABase hwriter RCy3]; }; + cbaf = derive2 { name="cbaf"; version="1.3.5"; sha256="08gr3axl77gyall3hd97gf5npqz588p24aafqf4p31djqxmv64wn"; depends=[BiocFileCache cgdsr genefilter gplots RColorBrewer xlsx]; }; + ccfindR = derive2 { name="ccfindR"; version="1.1.23"; sha256="14gl5jmjp23q0kh9wrv5ds5l0qly9x07h4ny1ivm3sqqlbs8ya9h"; depends=[ape gtools irlba Matrix RColorBrewer Rcpp RcppEigen Rmpi Rtsne S4Vectors SingleCellExperiment SummarizedExperiment]; }; + ccmap = derive2 { name="ccmap"; version="1.7.2"; sha256="1f0b24c0is8nxkfxxjnbdbmqv4p9ifcsdw49skkwnsc5n9k6w54c"; depends=[AnnotationDbi BiocManager ccdata data_table doParallel foreach lsa xgboost]; }; ccrepe = derive2 { name="ccrepe"; version="1.17.0"; sha256="1k464wrgigq0yyr2w7pw8qwkql49jnl58ayr26785ajdn79lfcq4"; depends=[infotheo]; }; + celaref = derive2 { name="celaref"; version="0.99.3"; sha256="1nmdqadrj5hgqijjywk8754ajj4i59bmrpah9xdginpiakdbskra"; depends=[BiocGenerics dplyr ggplot2 magrittr MAST Matrix readr rlang S4Vectors SummarizedExperiment tibble]; }; cellGrowth = derive2 { name="cellGrowth"; version="1.25.0"; sha256="12flwz3pzjhwqxsljy5g2ylgxiygln24z5zydc62xrkjcg3wqgn0"; depends=[lattice locfit]; }; - cellHTS2 = derive2 { name="cellHTS2"; version="2.45.0"; sha256="1dbjsxhfifjpmyn3w3zhmhaf3s2arrpl6lipg31sp9w9xfiij1xs"; depends=[Biobase BiocGenerics Category genefilter GSEABase hwriter locfit prada RColorBrewer splots vsn]; }; - cellTree = derive2 { name="cellTree"; version="1.11.0"; sha256="1rkrj316fm2xx1x7wjk9qv2kdr4vxhbixfw7y2r1p6kvxl1xwdi0"; depends=[gplots igraph maptpx slam topGO topicmodels xtable]; }; + cellHTS2 = derive2 { name="cellHTS2"; version="2.45.1"; sha256="0ccl152v44380666xhqj5s1vwd9xqih3a7ysdjb5n8mwpq1kq0av"; depends=[Biobase BiocGenerics Category genefilter GSEABase hwriter locfit prada RColorBrewer splots vsn]; }; + cellTree = derive2 { name="cellTree"; version="1.11.1"; sha256="026f59jj07j5jbv0j3048c44sz2zr50lzwy07m0i6yvl0w1pc57h"; depends=[gplots igraph maptpx slam topGO topicmodels xtable]; }; cellbaseR = derive2 { name="cellbaseR"; version="1.5.0"; sha256="0067s59gq395ha4kjmdvqx3bdjgkgczwvchwjswr23hm6ffbgss3"; depends=[BiocParallel data_table doParallel foreach httr jsonlite pbapply R_utils Rsamtools tidyr]; }; - cellity = derive2 { name="cellity"; version="1.9.0"; sha256="0rdknpw38cwf4vvq30g573irv4l51gyx9yaff8rkrd0b38bpywa8"; depends=[AnnotationDbi e1071 ggplot2 mvoutlier org_Hs_eg_db org_Mm_eg_db robustbase topGO]; }; - cellscape = derive2 { name="cellscape"; version="1.5.0"; sha256="0was4lsw2rpg98kzdzpd6wv84jzfh7ncgnvsyc2ijbjanf52ycxd"; depends=[dplyr gtools htmlwidgets jsonlite plyr reshape2 stringr]; }; + cellity = derive2 { name="cellity"; version="1.9.2"; sha256="0hc8whsqq066drwbk3aiz8pdy7zd3qx7fmsa5knw0xk1dpbpglcg"; depends=[AnnotationDbi e1071 ggplot2 mvoutlier org_Hs_eg_db org_Mm_eg_db robustbase topGO]; }; + cellscape = derive2 { name="cellscape"; version="1.5.1"; sha256="1fi9qxnhrh9n9br1gjpss8acpfd2fm22nd9ih2flng0hgy4aymyc"; depends=[dplyr gtools htmlwidgets jsonlite plyr reshape2 stringr]; }; cghMCR = derive2 { name="cghMCR"; version="1.39.0"; sha256="119nk170b8a8lr1hi2nmj2bgaydkxf11732bqxhpm13hn9cyvnpr"; depends=[BiocGenerics CNTools DNAcopy limma]; }; charm = derive2 { name="charm"; version="2.27.0"; sha256="0cgrh027qjy34nb0xd0fl7fxifpgb1i9qcy3g7w7vv0sgj5g2gxc"; depends=[Biobase Biostrings BSgenome ff fields genefilter gtools IRanges limma nor1mix oligo oligoClasses preprocessCore RColorBrewer siggenes SQN sva]; }; chimera = derive2 { name="chimera"; version="1.23.0"; sha256="16l1y016wdmdqm4psnl3rxs4gw1d8b0hvfr29x9sv7153fpvqxhf"; depends=[AnnotationDbi Biobase BSgenome_Hsapiens_UCSC_hg19 GenomicAlignments GenomicRanges Homo_sapiens Rsamtools TxDb_Hsapiens_UCSC_hg19_knownGene]; }; - chimeraviz = derive2 { name="chimeraviz"; version="1.7.0"; sha256="12xkgvmqfdwfzrxw6f3iqkbknqw3238ks5903jk314wc1sz1pxxc"; depends=[AnnotationDbi AnnotationFilter ArgumentCheck BiocStyle Biostrings dplyr DT ensembldb GenomeInfoDb GenomicAlignments GenomicRanges graph Gviz IRanges org_Hs_eg_db org_Mm_eg_db plyr RCircos RColorBrewer readr Rgraphviz rmarkdown Rsamtools S4Vectors]; }; + chimeraviz = derive2 { name="chimeraviz"; version="1.7.5"; sha256="0k0yn24v3lgkzwbx1597n5k81igjmvmz232mwfsazd3znwdbwm7b"; depends=[AnnotationDbi AnnotationFilter ArgumentCheck BiocStyle Biostrings data_table dplyr DT ensembldb GenomeInfoDb GenomicAlignments GenomicRanges graph Gviz IRanges org_Hs_eg_db org_Mm_eg_db plyr RCircos RColorBrewer Rgraphviz rmarkdown Rsamtools S4Vectors]; }; chipenrich = derive2 { name="chipenrich"; version="2.5.0"; sha256="1ssvmnnlf6s37hbj0cdpcjyfz3qj7mv1nfxbdsb3cbq541lxidlv"; depends=[AnnotationDbi BiocGenerics chipenrich_data GenomeInfoDb GenomicRanges IRanges lattice latticeExtra mgcv org_Dm_eg_db org_Dr_eg_db org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db plyr rms rtracklayer S4Vectors stringr]; }; chipseq = derive2 { name="chipseq"; version="1.31.0"; sha256="0pfi2jyi3cb73c6k0300k1yvk2nvzh6lc19qmgs9qxqm0zjh5vly"; depends=[BiocGenerics GenomicRanges IRanges lattice S4Vectors ShortRead]; }; chopsticks = derive2 { name="chopsticks"; version="1.47.0"; sha256="0lvd5fpvlkwzplm6wpxrmi6gl35vg9li8zs8kiyf65yggp8azkd7"; depends=[survival]; }; - chroGPS = derive2 { name="chroGPS"; version="1.99.1"; sha256="18i133z22d7pmd4xkkm2ciqpawvp7lh7sx4qkcysixxi9cdj7iix"; depends=[Biobase changepoint cluster DPpackage ellipse GenomicRanges ICSNP IRanges MASS vegan]; }; + chroGPS = derive2 { name="chroGPS"; version="1.99.4"; sha256="10grx4zwj2w2wcf4bf09m97fi4nn31q99jrlnmpm5zfwfyh9y1nk"; depends=[Biobase changepoint cluster DPpackage ellipse GenomicRanges ICSNP IRanges MASS vegan]; }; chromDraw = derive2 { name="chromDraw"; version="2.11.0"; sha256="17lb88jp4997nmdb7g3rmi509vn552rda603diq5qxjd8hxszhj7"; depends=[GenomicRanges Rcpp]; }; chromPlot = derive2 { name="chromPlot"; version="1.9.0"; sha256="0g7vnv12m9db563p99kcdv9mjb5h2saxmvq810ckw3vd9hxla4sm"; depends=[biomaRt GenomicRanges]; }; - chromVAR = derive2 { name="chromVAR"; version="1.3.0"; sha256="1vx8ai2x3mmrlpqz4kww19q6drwhs51ndfhqvcm20hnjvw4q86fb"; depends=[BiocGenerics BiocParallel Biostrings BSgenome DT GenomeInfoDb GenomicRanges ggplot2 IRanges Matrix miniUI nabor plotly RColorBrewer Rcpp RcppArmadillo Rsamtools Rtsne S4Vectors shiny SummarizedExperiment TFBSTools]; }; - chromstaR = derive2 { name="chromstaR"; version="1.7.1"; sha256="0jhli9jzxi35j8ar94wjjqbg3d3ankbizx2ck5kfpsr4kz6cf91j"; depends=[bamsignals chromstaRData doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges mvtnorm reshape2 Rsamtools S4Vectors]; }; - chromswitch = derive2 { name="chromswitch"; version="1.3.1"; sha256="1qylaxmyrh16gxh8l5isngs4ixk3v758f41r3nc15r1gbncdv7nx"; depends=[Biobase BiocParallel cluster dplyr GenomicRanges gplots IRanges lazyeval magrittr matrixStats NMF rtracklayer S4Vectors tidyr]; }; - cisPath = derive2 { name="cisPath"; version="1.21.0"; sha256="0bgc9jm3lkpij938yd1jni7yd4jbahqgr6s9zlzrly24f3pks24a"; depends=[]; }; - cleanUpdTSeq = derive2 { name="cleanUpdTSeq"; version="1.19.0"; sha256="0d7xk559jg3bik9gwzi3lh51jspmq3ain706d2cm4dq96wms03a5"; depends=[BiocGenerics BSgenome BSgenome_Drerio_UCSC_danRer7 e1071 GenomicRanges seqinr]; }; + chromVAR = derive2 { name="chromVAR"; version="1.3.2"; sha256="0wg1ajyff9ly82q0468cy33iysj59dfidp2qqgkp85vik0aci1sx"; depends=[BiocGenerics BiocParallel Biostrings BSgenome DT GenomeInfoDb GenomicRanges ggplot2 IRanges Matrix miniUI nabor plotly RColorBrewer Rcpp RcppArmadillo Rsamtools Rtsne S4Vectors shiny SummarizedExperiment TFBSTools]; }; + chromstaR = derive2 { name="chromstaR"; version="1.7.3"; sha256="0nbfzh7ks9816yllyd125nd4qm7fk5i4x36jd7wd81hp0cpb7ia5"; depends=[bamsignals chromstaRData doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges mvtnorm reshape2 Rsamtools S4Vectors]; }; + chromswitch = derive2 { name="chromswitch"; version="1.3.2"; sha256="1ls6007vz2b0ij543vgdpxv5dqbjaklv9ps81c3z6n91qf9ld2an"; depends=[Biobase BiocParallel cluster dplyr GenomicRanges gplots IRanges lazyeval magrittr matrixStats NMF rtracklayer S4Vectors tidyr]; }; + cicero = derive2 { name="cicero"; version="0.99.57"; sha256="1gj0ckn4b3ifkvvb8lbwl83fdnmcayk3wmd83piq95j8nkaba0c8"; depends=[assertthat Biobase BiocGenerics data_table dplyr FNN GenomicRanges ggplot2 glasso Gviz igraph IRanges Matrix monocle plyr reshape2 S4Vectors stringr tibble VGAM]; }; + cisPath = derive2 { name="cisPath"; version="1.21.1"; sha256="06s9ch9av414vqi8l6rsz8y49bklygv9m7wrvv8nmx14h6fvpbmq"; depends=[]; }; + cleanUpdTSeq = derive2 { name="cleanUpdTSeq"; version="1.19.1"; sha256="12izlkfqx1cshb48qzn987hhanqxjfhaiiwl6lrn0xpqbw384k3y"; depends=[BiocGenerics BSgenome BSgenome_Drerio_UCSC_danRer7 e1071 GenomicRanges seqinr]; }; cleaver = derive2 { name="cleaver"; version="1.19.0"; sha256="19jrmz8bjj9yg52j002zyf6v1as2k7m0g0msvmgvlsf0nvgk5h72"; depends=[Biostrings IRanges S4Vectors]; }; clippda = derive2 { name="clippda"; version="1.31.0"; sha256="18jsfx4y09mzsah8w2pqwarl7h1kn76cm6sjh6r3dqikbzq24rak"; depends=[Biobase lattice limma rgl scatterplot3d statmod]; }; clipper = derive2 { name="clipper"; version="1.21.1"; sha256="19gkqz94sxamw8gx1rib17j7sxivzflrhypkp4bsyqshkydyzgcq"; depends=[Biobase corpcor graph gRbase igraph KEGGgraph Matrix qpgraph RBGL Rcpp]; }; @@ -891,102 +957,109 @@ in with self; { clst = derive2 { name="clst"; version="1.29.0"; sha256="0bz0hd7zjr9a225hg1jl0r86zvdz4i9i63grg0nm0dvs32pbaf2g"; depends=[lattice ROC]; }; clstutils = derive2 { name="clstutils"; version="1.29.0"; sha256="0fsqlx06qd7bqdnk746pcn1w29xbpcpjazsnvk1dibxyxqkbqvjh"; depends=[ape clst lattice rjson RSQLite]; }; clustComp = derive2 { name="clustComp"; version="1.9.0"; sha256="1lmg17d3n97kp5z21wl2kyx140kmqlfwsm4q6qcq7j9zyfq2jrdc"; depends=[sm]; }; - clusterExperiment = derive2 { name="clusterExperiment"; version="2.1.5"; sha256="0fwbvm25ymmazw4i1l1v5bd0yrihzgiqmkycfxk5ismf9nbyny13"; depends=[ape BiocGenerics cluster DelayedArray dendextend edgeR HDF5Array howmany kernlab limma locfdr matrixStats NMF phylobase RColorBrewer Rcpp RSpectra S4Vectors scales SingleCellExperiment stringr SummarizedExperiment zinbwave]; }; - clusterProfiler = derive2 { name="clusterProfiler"; version="3.9.1"; sha256="0bz6n4y10f2kgkxmsr2rf8clqfsg2drgavx0xp36jv66bp511l4d"; depends=[AnnotationDbi DOSE enrichplot ggplot2 GO_db GOSemSim magrittr plyr qvalue rvcheck tidyr]; }; - clusterSeq = derive2 { name="clusterSeq"; version="1.5.0"; sha256="1naw9hprdgb2wxqcvjvzgmjhnl0cncixar7gzs7d63dyf9d3khzs"; depends=[baySeq BiocGenerics BiocParallel]; }; + clusterExperiment = derive2 { name="clusterExperiment"; version="2.1.6"; sha256="0wgi8qil7vyqlqsbqm0fbk9337wvcz53xid8qy4qc5l9pipf7s4r"; depends=[ape BiocGenerics cluster DelayedArray dendextend edgeR HDF5Array howmany kernlab limma locfdr matrixStats NMF phylobase RColorBrewer Rcpp RSpectra S4Vectors scales SingleCellExperiment stringr SummarizedExperiment zinbwave]; }; + clusterProfiler = derive2 { name="clusterProfiler"; version="3.9.2"; sha256="1y9kss22c64yk3abbcz12ph2q38xp6x38cvffnr3wcm71pa26aj2"; depends=[AnnotationDbi DOSE enrichplot ggplot2 GO_db GOSemSim magrittr plyr qvalue rvcheck tidyr]; }; + clusterSeq = derive2 { name="clusterSeq"; version="1.5.1"; sha256="0y8a5ik310pvhbrpaf77dpdlhgsggv8b4ziw9270lw552wq6m2s2"; depends=[baySeq BiocGenerics BiocParallel]; }; clusterStab = derive2 { name="clusterStab"; version="1.53.0"; sha256="1fz5l64c7sfzxvqrfxbwvla6k72dq32r9v9nsc4cycpmyyfvgqfg"; depends=[Biobase]; }; - cn_farms = derive2 { name="cn.farms"; version="1.29.0"; sha256="03nq4xyq4q4x9ajlz24pda4jy2vqnxrr2jyrfy54d54qqkn6hj18"; depends=[affxparser Biobase DBI DNAcopy ff lattice oligo oligoClasses preprocessCore snow]; }; + cn_farms = derive2 { name="cn.farms"; version="1.29.1"; sha256="0dysp6kvdgxbzjhm9sd0h9l2ckl7kvlg910bxzz192p9nlwpgc25"; depends=[affxparser Biobase DBI DNAcopy ff lattice oligo oligoClasses preprocessCore snow]; }; cn_mops = derive2 { name="cn.mops"; version="1.27.0"; sha256="1fzsp4amldbfg2msll3synvwlwdsda1fajwsl5qxg83pcy0v8rm2"; depends=[Biobase BiocGenerics exomeCopy GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors]; }; cnvGSA = derive2 { name="cnvGSA"; version="1.25.0"; sha256="0ha9nh485r7x67q25cj6r7m8lckw9bm1kvd1rvkrwn6nnlld8bn1"; depends=[brglm doParallel foreach GenomicRanges splitstackshape]; }; coGPS = derive2 { name="coGPS"; version="1.25.0"; sha256="081ljzlc0vq19h7w31ccqxbdhi2rivi8qrrvnxw6imj0pfckn1hn"; depends=[]; }; - coMET = derive2 { name="coMET"; version="1.13.0"; sha256="1vyzwrdf10n9ribfcacfxmsfkr6pm9g4gi90n2c5lhhn4983m1wk"; depends=[biomaRt colortools corrplot GenomicRanges gridExtra Gviz hash IRanges psych rtracklayer S4Vectors]; }; - cobindR = derive2 { name="cobindR"; version="1.19.0"; sha256="1hb6mwd6xqxgzdglz496cn39hmjnxs87qc0c633r6a2bhq8dpcca"; depends=[BiocGenerics biomaRt Biostrings BSgenome gmp gplots IRanges mclust rtfbs seqinr yaml]; }; + coMET = derive2 { name="coMET"; version="1.13.4"; sha256="0fzgwy11jcscp207giwdwpkq5zad72sdhcd4d5qrprda8565kx33"; depends=[biomaRt colortools corrplot GenomicRanges gridExtra Gviz hash IRanges psych rtracklayer S4Vectors]; }; + coRdon = derive2 { name="coRdon"; version="0.99.11"; sha256="1fa2zzqrnj5ggk3czvdqkn1ixha1a991xjv27plw9hvy8snvyjzc"; depends=[Biobase Biostrings data_table dplyr ggplot2 purrr]; }; + cobindR = derive2 { name="cobindR"; version="1.19.1"; sha256="1n4yr8izd1fhn6qzcifamhvd1shah0hv06v1a097xjnghnr46r8q"; depends=[BiocGenerics biomaRt Biostrings BSgenome gmp gplots IRanges mclust rtfbs seqinr yaml]; }; codelink = derive2 { name="codelink"; version="1.49.0"; sha256="0fqxdmzwx6vhclsamc4i0kshdnqpjpqgzrmjm2lwvjai2bnbiaz4"; depends=[annotate Biobase BiocGenerics limma]; }; coexnet = derive2 { name="coexnet"; version="1.3.0"; sha256="0kqzvi5zs1nvcnbvgrq06fzzcfdsga5fz0r70drcsx449nkqrj5c"; depends=[acde affy Biobase GEOquery igraph limma minet rmarkdown siggenes STRINGdb SummarizedExperiment vsn]; }; - cogena = derive2 { name="cogena"; version="1.15.0"; sha256="05hdmx7awxsrbblm0sfgszhi10wggpx2141ariy01gvha8kmm8l8"; depends=[amap apcluster Biobase biwt class cluster corrplot devtools doParallel dplyr fastcluster foreach ggplot2 gplots kohonen mclust reshape2]; }; - compcodeR = derive2 { name="compcodeR"; version="1.17.0"; sha256="0b591axva9x93pq7cbcg9z86n6rdnaw29q18q7cwvd44j5l8b6ah"; depends=[caTools edgeR gdata ggplot2 gplots gtools KernSmooth knitr lattice limma markdown MASS modeest ROCR sm stringr vioplot]; }; - condcomp = derive2 { name="condcomp"; version="0.99.1"; sha256="0493d56hqn1vrd85j7174y9i2f7whqy68nn5645fr57a0wl4bn4i"; depends=[cluster ggplot2 ggrepel outliers]; }; + cogena = derive2 { name="cogena"; version="1.15.1"; sha256="0ch85p3abar0cahb3f8hrd28ylwbd1m7z7s28gh4wrrxx9cfqjmx"; depends=[amap apcluster Biobase biwt class cluster corrplot devtools doParallel dplyr fastcluster foreach ggplot2 gplots kohonen mclust reshape2]; }; + compEpiTools = derive2 { name="compEpiTools"; version="1.15.3"; sha256="06m6kd2c6cadnsl8lq3dna1kxyc7sgr14g9qbjr3qf40kc2njmka"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges GO_db gplots IRanges methylPipe Rsamtools S4Vectors topGO XVector]; }; + compcodeR = derive2 { name="compcodeR"; version="1.17.2"; sha256="0p8mv2pw8hrv23yswqavagii5ascppmgm89zq7589xnc20bl70yh"; depends=[caTools edgeR gdata ggplot2 gplots gtools KernSmooth knitr lattice limma markdown MASS modeest ROCR sm stringr vioplot]; }; + condcomp = derive2 { name="condcomp"; version="0.99.2"; sha256="1wckrk43h6ab30caqvffrxlssib2iigagqlpbifwf6l2856c642i"; depends=[cluster ggplot2 ggrepel outliers]; }; + consensus = derive2 { name="consensus"; version="0.99.17"; sha256="0ipdx2qazvh2aliz1k48cq6k21vn40wql1h67qgcnb5s8s10k24a"; depends=[gplots matrixStats RColorBrewer]; }; + consensusDE = derive2 { name="consensusDE"; version="0.99.10"; sha256="1zx233m9d65xvsjwgm1m54sqqvp3fjjcxi0yj1j7by3a96yhy7my"; depends=[airway AnnotationDbi Biobase BiocParallel Biostrings dendextend DESeq2 EDASeq edgeR GenomicAlignments GenomicFeatures limma pcaMethods RColorBrewer Rsamtools RUVSeq S4Vectors SummarizedExperiment TxDb_Dmelanogaster_UCSC_dm3_ensGene]; }; consensusOV = derive2 { name="consensusOV"; version="1.3.0"; sha256="0jk776svh4krp1cj77sy9lrp3rx6ka8vbc4xz1armf9vd9sn0ln8"; depends=[Biobase gdata genefu GSVA limma matrixStats randomForest]; }; consensusSeekeR = derive2 { name="consensusSeekeR"; version="1.9.0"; sha256="0hdfnvvd06s2pbrsbrcp6nky7clvj2xqdf3d6x728mxfv17yflrl"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicRanges IRanges rtracklayer S4Vectors stringr]; }; - contiBAIT = derive2 { name="contiBAIT"; version="1.9.0"; sha256="1fgff5pr9ggqpl85yh410lspq0mbq9r264rsw716hqjy2rm6g8bd"; depends=[BH BiocParallel clue cluster colorspace data_table diagram DNAcopy exomeCopy GenomicAlignments GenomicFiles GenomicRanges ggplot2 gplots gtools IRanges Rcpp reshape2 Rsamtools rtracklayer S4Vectors TSP]; }; + contiBAIT = derive2 { name="contiBAIT"; version="1.9.1"; sha256="0nli8r7wn20f92wax39gk8nawbiy8xjdxfv7r8267n9cmfdywxhm"; depends=[BH BiocParallel clue cluster colorspace data_table diagram DNAcopy exomeCopy GenomicAlignments GenomicFiles GenomicRanges ggplot2 gplots gtools IRanges Rcpp reshape2 Rsamtools rtracklayer S4Vectors TSP]; }; conumee = derive2 { name="conumee"; version="1.15.0"; sha256="1xpq77j6zwqj3s8qxjvnzvrwk27g6cipqp8k8g1x61ayalw5mwn9"; depends=[DNAcopy GenomeInfoDb GenomicRanges IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest IRanges minfi rtracklayer]; }; convert = derive2 { name="convert"; version="1.57.0"; sha256="1bfwmxcvg3dxygzbl290l645ri610fxymvba349hj785w9v09hgi"; depends=[Biobase limma marray]; }; copa = derive2 { name="copa"; version="1.49.0"; sha256="08myzip07f28iyyf1v28y60pwmyabv7yhbd1y9avmmfa8swh4zav"; depends=[Biobase]; }; copynumber = derive2 { name="copynumber"; version="1.21.0"; sha256="1qcrq5ls1rj5had0v2abcya5bbm1mpni97lxvlm75yxpalkrbmg1"; depends=[BiocGenerics GenomicRanges IRanges S4Vectors]; }; - coseq = derive2 { name="coseq"; version="1.5.1"; sha256="0b5680pzwalgl8dfdclc03cp9742ap65d16h86h150h72h55cvh1"; depends=[BiocParallel capushe compositions corrplot DESeq2 e1071 edgeR ggplot2 gridExtra HTSCluster HTSFilter mvtnorm Rmixmod S4Vectors scales SummarizedExperiment]; }; + coseq = derive2 { name="coseq"; version="1.5.2"; sha256="1hx8brqi422k5q9isbdfrp1799c161yjkfad2hq9zw3rkjj3hbyf"; depends=[BiocParallel capushe compositions corrplot DESeq2 e1071 edgeR ggplot2 HTSCluster HTSFilter mvtnorm Rmixmod S4Vectors scales SummarizedExperiment]; }; cosmiq = derive2 { name="cosmiq"; version="1.15.2"; sha256="1n91gp3v27924pavlm4kkidihzhdgj5p679x5krxkqf430f3kbk4"; depends=[faahKO MassSpecWavelet pracma Rcpp xcms]; }; + countsimQC = derive2 { name="countsimQC"; version="0.99.4"; sha256="0fnjl8pan117fcaxvpbcplrlqcd3sx2pq7ddcwy4qvhphbksk148"; depends=[caTools DESeq2 dplyr DT edgeR genefilter GenomeInfoDbData ggplot2 randtests rmarkdown SummarizedExperiment tidyr]; }; covEB = derive2 { name="covEB"; version="1.7.0"; sha256="01qy9713bixj1nbdhafyappbm0m6q6k769akzysvcb4cs74isq3x"; depends=[Biobase gsl igraph LaplacesDemon Matrix mvtnorm]; }; - covRNA = derive2 { name="covRNA"; version="1.7.0"; sha256="06rx0g294hndxkb2rgjghn7jbw0vn63wy54705s57wmi0cacq8dd"; depends=[ade4 Biobase genefilter]; }; + covRNA = derive2 { name="covRNA"; version="1.7.1"; sha256="09915p41xmb4gxl9nhpy8qrlpf4z1dlc9g3yi1j73a49kvgamlaa"; depends=[ade4 Biobase genefilter]; }; cpvSNP = derive2 { name="cpvSNP"; version="1.13.0"; sha256="0wv304nisngcbc8as6anlb7i090wl078rs0pclix975akj9s4zpw"; depends=[BiocParallel corpcor GenomicFeatures ggplot2 GSEABase plyr]; }; cqn = derive2 { name="cqn"; version="1.27.0"; sha256="1680ww5rr4y1jqhb267hbgk77ha87awbjrl3id5cz7d7ps75a7fb"; depends=[mclust nor1mix preprocessCore quantreg]; }; - crisprseekplus = derive2 { name="crisprseekplus"; version="1.7.0"; sha256="01s08znfbd4am3lxm42664jx5qkjm383w50k36f2linrsg8j2rdc"; depends=[AnnotationDbi BiocInstaller BSgenome CRISPRseek DT GenomicFeatures GenomicRanges GUIDEseq hash shiny shinyjs]; }; - crlmm = derive2 { name="crlmm"; version="1.39.0"; sha256="1piwi4w7shmszq2kbcw400jp0iqjhjv6q7kd7zpa4yqnh35dxa8q"; depends=[affyio beanplot Biobase BiocGenerics ellipse ff foreach illuminaio lattice limma matrixStats mvtnorm oligoClasses preprocessCore RcppEigen SNPchip VGAM]; }; - csaw = derive2 { name="csaw"; version="1.15.7"; sha256="18wy6q7qb4zif2sjgr0fygq6y3yj706iijib6dw2ywb4xsb7gqy8"; depends=[AnnotationDbi BiocGenerics BiocParallel edgeR GenomeInfoDb GenomicFeatures GenomicRanges IRanges limma Rcpp Rhtslib Rsamtools S4Vectors SummarizedExperiment zlibbioc]; }; + crisprseekplus = derive2 { name="crisprseekplus"; version="1.7.3"; sha256="07fcgm24mfxxa7nv68kdd5pawkq46n2p9i3k2pmpfa07irywizf6"; depends=[AnnotationDbi BiocManager BSgenome CRISPRseek DT GenomicFeatures GenomicRanges GUIDEseq hash shiny shinyjs]; }; + crlmm = derive2 { name="crlmm"; version="1.39.1"; sha256="1mb7zpqb9qfpjg8samrdd5pxgj64ganm7mkh2y7aa3vlhj450rmx"; depends=[affyio beanplot Biobase BiocGenerics ellipse ff foreach illuminaio lattice limma matrixStats mvtnorm oligoClasses preprocessCore RcppEigen SNPchip VGAM]; }; + crossmeta = derive2 { name="crossmeta"; version="1.7.1"; sha256="0n5g234ghcan9jx1cavpzngypjjcrg7lz621czfg8d0rfj8wavs9"; depends=[affxparser affy AnnotationDbi Biobase BiocGenerics BiocManager ccmap data_table doParallel doRNG DT fdrtool foreach GEOquery ggplot2 limma matrixStats metaMA metap miniUI oligo pander plotly RColorBrewer rdrop2 reshape shiny stringr sva]; }; + csaw = derive2 { name="csaw"; version="1.15.9"; sha256="0p5clsxqfy8ihsh8lxvhl8ally5gi1k6v7cclvp8kvvwj5mvcg6p"; depends=[AnnotationDbi BiocGenerics BiocParallel edgeR GenomeInfoDb GenomicFeatures GenomicRanges IRanges limma Rcpp Rhtslib Rsamtools S4Vectors SummarizedExperiment zlibbioc]; }; ctc = derive2 { name="ctc"; version="1.55.0"; sha256="0zkzdv3yrrr671bvr0j7xi1c358r7k09f96x5sciljg95gwpq6fm"; depends=[amap]; }; - ctsGE = derive2 { name="ctsGE"; version="1.7.1"; sha256="1m8fm0339d17hfprwgpck31dqmm9cf1ajk60rii32sphv8x1h0r8"; depends=[ccaPP ggplot2 limma reshape2 shiny stringr]; }; + ctsGE = derive2 { name="ctsGE"; version="1.7.2"; sha256="1qykz2w7c0v7zs9ga0crvdydi57sqbfkg0i14rfr9mrh2cn874la"; depends=[ccaPP ggplot2 limma reshape2 shiny stringr]; }; cummeRbund = derive2 { name="cummeRbund"; version="2.23.0"; sha256="12npw9nr02fs1lyj1fism4zbw1vbd47rxyyc21z8kx9ra5c76df9"; depends=[Biobase BiocGenerics fastcluster ggplot2 Gviz plyr reshape2 RSQLite rtracklayer S4Vectors]; }; + customProDB = derive2 { name="customProDB"; version="1.21.5"; sha256="01fkp1bhk21flb3ik38i533zxdzv2g1qfp9bp0b91r29z5rp8nz9"; depends=[AhoCorasickTrie AnnotationDbi biomaRt Biostrings DBI GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges plyr RCurl Rsamtools RSQLite rtracklayer S4Vectors stringr VariantAnnotation]; }; cycle = derive2 { name="cycle"; version="1.35.0"; sha256="0wij6y9alg55kric7bs8syrw8ypd5w0iayh057qcl9qqr5lp1vq7"; depends=[Biobase Mfuzz]; }; - cydar = derive2 { name="cydar"; version="1.5.0"; sha256="1qch98a8p1wmyaccz7zg1vsamikr8rmrqki9w5ahkdn5f05z7fs4"; depends=[Biobase BiocParallel flowCore Rcpp S4Vectors shiny SummarizedExperiment viridis]; }; + cydar = derive2 { name="cydar"; version="1.5.9"; sha256="0c7k6c02yqs5nr8pirvcgdmjgqhg7ynml1sf4fsjj6m0jbqrp29p"; depends=[Biobase BiocGenerics BiocNeighbors BiocParallel flowCore Rcpp S4Vectors shiny SingleCellExperiment SummarizedExperiment viridis]; }; cytofkit = derive2 { name="cytofkit"; version="1.13.0"; sha256="0dl0y609w2y3wpncw4mxhflrnq1ymdmzp8qwnrlc13ykkrcwh40w"; depends=[Biobase colourpicker destiny doParallel e1071 flowCore FlowSOM ggplot2 ggrepel gplots igraph pdist plyr RANN Rcpp reshape2 Rtsne shiny shinyFiles vegan VGAM]; }; - cytolib = derive2 { name="cytolib"; version="1.3.0"; sha256="0zyfs7j7jijrrg7v8zf77nlad63x8id2f9bpcid4pn61qlqxqhgf"; depends=[BH RProtoBufLib]; }; + cytolib = derive2 { name="cytolib"; version="1.3.2"; sha256="10c9f7fqa5qbcxbs985ad3lljbmgfnwgcgfkp95yhahr97jb7w3s"; depends=[BH RProtoBufLib]; }; dSimer = derive2 { name="dSimer"; version="1.7.0"; sha256="0ra9y6df21s97pa8810dzbcwjhbh9br86mlqkgvvrq5rxwj97a35"; depends=[AnnotationDbi ggplot2 GO_db igraph org_Hs_eg_db Rcpp reshape2]; }; daMA = derive2 { name="daMA"; version="1.53.0"; sha256="1ahmx5c58az3s3jybz3gx7g853n0qy7b84rm7gq157yi4iil01wf"; depends=[MASS]; }; - dada2 = derive2 { name="dada2"; version="1.9.0"; sha256="1w8lq1ikzfa2dzmx0bk1p3v88af9ddhv8fqqkvh2pr1n71r09nrc"; depends=[BiocGenerics Biostrings data_table ggplot2 IRanges Rcpp RcppParallel reshape2 ShortRead XVector]; }; - dagLogo = derive2 { name="dagLogo"; version="1.19.0"; sha256="0bp4cclcwc6asnk5s9fzzcq17lv5fz93j0smsszq3csl99qpiwmi"; depends=[biomaRt Biostrings grImport motifStack pheatmap]; }; + dada2 = derive2 { name="dada2"; version="1.9.3"; sha256="1qqw51pvgvwznx3v81xbn9qakxd6s9yl8f2pxbzr0ampgm22s9yn"; depends=[BiocGenerics Biostrings data_table ggplot2 IRanges Rcpp RcppParallel reshape2 ShortRead XVector]; }; + dagLogo = derive2 { name="dagLogo"; version="1.19.1"; sha256="1y966jzzy7357gr2vdq0qgkwvbdq8pls51vfmmwka9c2zqnsdxdm"; depends=[biomaRt Biostrings grImport motifStack pheatmap]; }; dcGSA = derive2 { name="dcGSA"; version="1.9.0"; sha256="0d85qpq1v9sky5x8nv5w0hfry9w833kkljq5laa2x3n10czp1hb3"; depends=[BiocParallel Matrix]; }; - ddCt = derive2 { name="ddCt"; version="1.37.0"; sha256="11nh9xzx3iyvbb1k40581ym17a0l2brcqmscx9riyh8bzh7jh1h0"; depends=[Biobase BiocGenerics lattice RColorBrewer xtable]; }; - ddPCRclust = derive2 { name="ddPCRclust"; version="1.1.1"; sha256="0lykdnbhl19nx00yxp09a2nvi10yq13dpqy30ixvbcjl04562j2q"; depends=[clue flowCore flowDensity flowPeaks ggplot2 openxlsx plotrix R_utils SamSPECTRAL]; }; - debrowser = derive2 { name="debrowser"; version="1.9.0"; sha256="099gdj0vxihwyb35pfk3hhfay7zyz3nirzlzccnjknrybfdyd7i3"; depends=[annotate AnnotationDbi baySeq clusterProfiler d3heatmap DESeq2 DOSE DT edgeR enrichplot GenomicRanges ggplot2 ggvis googleAuthR gplots igraph IRanges jsonlite limma org_Hs_eg_db org_Mm_eg_db pathview RColorBrewer RCurl reshape2 S4Vectors shiny shinyBS shinydashboard shinyjs stringi SummarizedExperiment sva V8]; }; - decontam = derive2 { name="decontam"; version="1.1.0"; sha256="1chys2j507y4pqcca2vsf905qz7g7vw71f3rapxq39mhzp4bcjda"; depends=[ggplot2 reshape2]; }; - deepSNV = derive2 { name="deepSNV"; version="1.27.2"; sha256="0rm1wvw8qq20d4dcqijbsizhnyyrdvl6wwb6gfvafq5rzfdi01xc"; depends=[Biostrings GenomicRanges IRanges Rhtslib SummarizedExperiment VariantAnnotation VGAM]; }; - deltaGseg = derive2 { name="deltaGseg"; version="1.21.0"; sha256="1378dj1gghsphwwbhbfixbnf49lfjxy0dn297b5lsjh2h40znc2z"; depends=[changepoint fBasics ggplot2 pvclust reshape scales tseries wavethresh]; }; - derfinder = derive2 { name="derfinder"; version="1.15.0"; sha256="199nk5kjza1cy9rclgff6qq2pkzw5lfg69y9s60hbyd0hacxsqxx"; depends=[AnnotationDbi BiocGenerics BiocParallel bumphunter derfinderHelper GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicRanges Hmisc IRanges qvalue Rsamtools rtracklayer S4Vectors]; }; - derfinderHelper = derive2 { name="derfinderHelper"; version="1.15.0"; sha256="1v32nrznh4nm67fsjqcqbj3ifb8hiddqfcmg8nlwmgiwq78fxksi"; depends=[IRanges Matrix S4Vectors]; }; - derfinderPlot = derive2 { name="derfinderPlot"; version="1.15.0"; sha256="1zabxardj0gw8b4bscpkdxbddcd5ygxpgv0da6c7i04jp5qb80sg"; depends=[derfinder GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 IRanges limma plyr RColorBrewer RefManageR reshape2 S4Vectors scales]; }; + ddCt = derive2 { name="ddCt"; version="1.37.1"; sha256="1bysg67mqyrx6fqxsfbxbn4fw3brpyw0nyrvxkgbh6kwwwaccwaw"; depends=[Biobase BiocGenerics lattice RColorBrewer xtable]; }; + ddPCRclust = derive2 { name="ddPCRclust"; version="1.1.2"; sha256="0d09vdwrv9kifgld4g3342xrcfi85y46nnl1pq4yv1n8dx14k3ms"; depends=[clue flowCore flowDensity flowPeaks ggplot2 openxlsx plotrix R_utils SamSPECTRAL]; }; + debrowser = derive2 { name="debrowser"; version="1.9.21"; sha256="0a4nzgw4066a9ryanvdjrbscbns6a74js3c0gadw7q19b824gv6i"; depends=[annotate AnnotationDbi baySeq clusterProfiler colourpicker d3heatmap DESeq2 DOSE DT edgeR enrichplot GenomicRanges ggplot2 googleAuthR gplots Harman heatmaply igraph IRanges jsonlite limma org_Hs_eg_db org_Mm_eg_db pathview plotly RColorBrewer RCurl reshape2 S4Vectors shiny shinyBS shinydashboard shinyjs stringi SummarizedExperiment sva V8]; }; + decontam = derive2 { name="decontam"; version="1.1.2"; sha256="0p3kdcwl0gph9mdffd7jmycpcj1kbk8rgcwhp0idkm2xbfnra4n2"; depends=[ggplot2 reshape2]; }; + deepSNV = derive2 { name="deepSNV"; version="1.27.3"; sha256="02wn7y8dbikllpmgbq5fksxvbw6dnz3hkl1lvjd9ff6avsrpyzjs"; depends=[Biostrings GenomicRanges IRanges Rhtslib SummarizedExperiment VariantAnnotation VGAM]; }; + deltaGseg = derive2 { name="deltaGseg"; version="1.21.1"; sha256="1mrm1j816j8b9myzy8az16sg8v1g5ynxv1j2dpwbqg003pm9b2zn"; depends=[changepoint fBasics ggplot2 pvclust reshape scales tseries wavethresh]; }; + derfinder = derive2 { name="derfinder"; version="1.15.4"; sha256="1qyblw4iy33r37k9zfsbf6rbgx8fnz89wv99dy3xibiw07hahgf1"; depends=[AnnotationDbi BiocGenerics BiocParallel bumphunter derfinderHelper GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicRanges Hmisc IRanges qvalue Rsamtools rtracklayer S4Vectors]; }; + derfinderHelper = derive2 { name="derfinderHelper"; version="1.15.2"; sha256="1xgzx1q2fzglnrn3xyqmhbzf9rl56wbfdc4n0fy0lfrg13rb5kq1"; depends=[IRanges Matrix S4Vectors]; }; + derfinderPlot = derive2 { name="derfinderPlot"; version="1.15.2"; sha256="0vp6x6dd8ykvgaic82crykhddykiz9y3ji7nmg2j66cklsvp018s"; depends=[derfinder GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 IRanges limma plyr RColorBrewer RefManageR reshape2 S4Vectors scales]; }; destiny = derive2 { name="destiny"; version="2.11.3"; sha256="0z9z0frhif84rshnpffizjjv2ckr1mp7vqlk9r3fyyxzz1pkrl29"; depends=[Biobase BiocGenerics ggplot2 ggthemes igraph Matrix proxy Rcpp RcppEigen scales scatterplot3d smoother SummarizedExperiment VIM]; }; - dexus = derive2 { name="dexus"; version="1.21.0"; sha256="0p7ihli3la0x42v042azwxnjhwn6h8vlnfs8rrbg5wbpz1i3nsy9"; depends=[BiocGenerics]; }; + dexus = derive2 { name="dexus"; version="1.21.1"; sha256="00yld22dj4i9ci2jniqycxcli0xg0k06n02cg3i0lj03g4ml202h"; depends=[BiocGenerics]; }; diffGeneAnalysis = derive2 { name="diffGeneAnalysis"; version="1.63.0"; sha256="19g9azy3s359k84rg677l0yndq13h48fs0rmddrs4z8z8w4k2n9h"; depends=[minpack_lm]; }; - diffHic = derive2 { name="diffHic"; version="1.13.3"; sha256="0ka8kma6imv3i2j1y2p83aandrmpvj6w1wqj5dsanx4mh6f316vk"; depends=[BiocGenerics Biostrings BSgenome csaw edgeR GenomeInfoDb GenomicRanges InteractionSet IRanges limma locfit Rcpp rhdf5 Rhtslib Rsamtools S4Vectors SummarizedExperiment zlibbioc]; }; - diffcoexp = derive2 { name="diffcoexp"; version="1.1.0"; sha256="1dmf32f2mq4m71nbr8g5bhkv8wl8lhyljs5jgpnkzw7ibfaisr6j"; depends=[BiocGenerics DiffCorr igraph psych SummarizedExperiment WGCNA]; }; - diffcyt = derive2 { name="diffcyt"; version="1.1.1"; sha256="17g08x65glkgjn5h24h45fi9qdq53s9bmn323zpnc6012p8cx8vb"; depends=[circlize ComplexHeatmap dplyr edgeR flowCore FlowSOM limma lme4 magrittr multcomp reshape2 S4Vectors SummarizedExperiment tidyr]; }; + diffHic = derive2 { name="diffHic"; version="1.13.7"; sha256="07w2djzjsla6z7dy2g2dr0zfc7p1r88i6vgs4fmp0jr0ifsc3dal"; depends=[BiocGenerics Biostrings BSgenome csaw edgeR GenomeInfoDb GenomicRanges InteractionSet IRanges limma locfit Rcpp rhdf5 Rhtslib Rsamtools rtracklayer S4Vectors SummarizedExperiment zlibbioc]; }; + diffcoexp = derive2 { name="diffcoexp"; version="1.1.2"; sha256="1nrhdhzz5768ah9p3z5xszn48q6swawz3k9d72lxywm1yx0yqy5c"; depends=[BiocGenerics DiffCorr igraph psych SummarizedExperiment WGCNA]; }; + diffcyt = derive2 { name="diffcyt"; version="1.1.11"; sha256="1chm02ixzh7627xmdpb91zhymamxnc2j3n7di97yc1fgv83bm0bx"; depends=[circlize ComplexHeatmap dplyr edgeR flowCore FlowSOM limma lme4 magrittr multcomp reshape2 S4Vectors SummarizedExperiment tidyr]; }; diffloop = derive2 { name="diffloop"; version="1.9.0"; sha256="0wfnh79xkfkkzm3rkx90i0ij81l33ssm03b91mfq02yzijqv5dzv"; depends=[Biobase biomaRt data_table dplyr edgeR foreach GenomeInfoDb GenomicRanges ggplot2 IRanges limma locfit matrixStats pbapply plyr readr reshape2 rtracklayer S4Vectors statmod Sushi]; }; - diffuStats = derive2 { name="diffuStats"; version="0.105.0"; sha256="1dhnqf2nljmc3pvn9hwmnihlgg5qwjnh5almfzw9vgnwm10yrkjl"; depends=[expm igraph MASS Matrix plyr precrec Rcpp RcppArmadillo RcppParallel]; }; - diggit = derive2 { name="diggit"; version="1.13.0"; sha256="1zy4na2sa2g8vg7aw6n8k3965yyhal0sp6f8rrgwgh3wd8w1zf56"; depends=[Biobase ks viper]; }; - discordant = derive2 { name="discordant"; version="1.5.0"; sha256="1lnljhz2xa7xfdbi8dwq1nzdm0w9j35251yh0dndhrq0sck1a3dg"; depends=[Biobase biwt gtools MASS]; }; + diffuStats = derive2 { name="diffuStats"; version="1.1.0"; sha256="02269q356hvddnsi87p141cdyl1bmprarm9hqvpyjj244a8nirrv"; depends=[expm igraph MASS Matrix plyr precrec Rcpp RcppArmadillo RcppParallel]; }; + diggit = derive2 { name="diggit"; version="1.13.1"; sha256="1sryn5n6vrc9cf7gsz9xgg6hp9gn18m7h9zz286l1p5cvmk4y1i9"; depends=[Biobase ks viper]; }; + discordant = derive2 { name="discordant"; version="1.5.2"; sha256="011vh7xzxldfmid6w4g29b7s4w81lqifwxfj6r0d6725pa3bcxb4"; depends=[Biobase biwt gtools MASS]; }; dks = derive2 { name="dks"; version="1.27.0"; sha256="04da9f6ckqzw8dppxrrcc7aqgkb980jq1g15dkmzx9ys54bnhh78"; depends=[cubature]; }; - dmrseq = derive2 { name="dmrseq"; version="1.1.12"; sha256="0whd2fwvbf7xxxdw2dmfpn1xp3xp7w8jli9n0nj2yi0p0a98889n"; depends=[AnnotationHub annotatr BiocParallel bsseq bumphunter DelayedMatrixStats GenomeInfoDb GenomicRanges ggplot2 IRanges locfit matrixStats nlme outliers RColorBrewer rtracklayer S4Vectors]; }; - doppelgangR = derive2 { name="doppelgangR"; version="1.9.5"; sha256="16d6j10b57llfwvg7kcimmhisg1rqmnvv3pb46fgn1mldahmiziq"; depends=[Biobase BiocParallel digest impute mnormt SummarizedExperiment sva]; }; - drawProteins = derive2 { name="drawProteins"; version="1.1.0"; sha256="1bhdz04d8xv8hx821n6scni9gpc8r6qqs954i9dc1p366x995y8c"; depends=[dplyr ggplot2 httr]; }; + dmrseq = derive2 { name="dmrseq"; version="1.1.21"; sha256="15jvpy5n27vdb387qmcv63c2fs5pnx5zdsg1h2b99cil650b1c0s"; depends=[AnnotationHub annotatr BiocParallel bsseq bumphunter DelayedMatrixStats GenomeInfoDb GenomicRanges ggplot2 IRanges locfit matrixStats nlme outliers RColorBrewer rtracklayer S4Vectors]; }; + doppelgangR = derive2 { name="doppelgangR"; version="1.9.6"; sha256="07y79wbb82j4iqh04rcjg66qkngply7s4b2hcmc5i6g5ycar5cmv"; depends=[Biobase BiocParallel digest impute mnormt SummarizedExperiment sva]; }; + drawProteins = derive2 { name="drawProteins"; version="1.1.1"; sha256="12n5pi0yj692k9wridiwnjazcajknlpvjbl7wav6408lg4ph5z6p"; depends=[dplyr ggplot2 httr readr stringr]; }; dualKS = derive2 { name="dualKS"; version="1.41.0"; sha256="125gpaykiy2cplkvixghj2c1xh08zga7jvi2xmsh0j1illdssab5"; depends=[affy Biobase]; }; - dupRadar = derive2 { name="dupRadar"; version="1.11.0"; sha256="17m3xmw8m4qaljlz3kw158mrnqcm3ss0c8dqla8j4p33mfyzc7qy"; depends=[Rsubread]; }; - dyebias = derive2 { name="dyebias"; version="1.41.0"; sha256="0c4z54pw2pdfg4z2mm70w6h4my2kv1swndy50r4bjv0ll46yyvcs"; depends=[Biobase marray]; }; + dupRadar = derive2 { name="dupRadar"; version="1.11.1"; sha256="0myl9j77gpjgkqz24vxnf8x889qa06xr54bgmr32jhb0n6i9km90"; depends=[Rsubread]; }; + dyebias = derive2 { name="dyebias"; version="1.41.2"; sha256="0mjin0pvpi9z9vq8pj5smbz4968za5n31aclgwaiydy5lfmqd6zz"; depends=[Biobase marray]; }; easyRNASeq = derive2 { name="easyRNASeq"; version="2.17.0"; sha256="0siki1k4qvkgkyhldrz7i05vhria9nd9yvf848a4gkx4l68v2189"; depends=[Biobase BiocGenerics BiocParallel biomaRt Biostrings DESeq edgeR GenomeInfoDb genomeIntervals GenomicAlignments GenomicRanges IRanges locfit LSD Rsamtools S4Vectors ShortRead SummarizedExperiment]; }; ecolitk = derive2 { name="ecolitk"; version="1.53.0"; sha256="14df276m23zlmz6q2lhbv2j91wj2jaxhs6wnl5x5gnjj1p8jv6wj"; depends=[Biobase]; }; - edge = derive2 { name="edge"; version="2.13.0"; sha256="1y1g10lkpkv0z6sk79ir91jarx0gdl9fy5lx4snykq1amk7b9ib1"; depends=[Biobase jackstraw MASS qvalue snm sva]; }; - edgeR = derive2 { name="edgeR"; version="3.23.3"; sha256="0lz12phiqppzyvq1mf6gfdvzpqf2jpf0635n6vym7nqpxpksrgiy"; depends=[limma locfit Rcpp]; }; - eegc = derive2 { name="eegc"; version="1.7.4"; sha256="1q3fslmrw66z7x3anl8w7hszgz5qlq2f7d9hp9r6x4acipxni5ff"; depends=[AnnotationDbi clusterProfiler DESeq2 DOSE edgeR ggplot2 gplots igraph limma org_Hs_eg_db org_Mm_eg_db pheatmap R_utils S4Vectors sna wordcloud]; }; - eiR = derive2 { name="eiR"; version="1.21.0"; sha256="0s0xrnxzrwp4cc0jw3a0vpx7psyiwjz4a5y3ajxr68lq7k09hdma"; depends=[BiocGenerics ChemmineR DBI digest gespeR RcppAnnoy RCurl RUnit snow snowfall]; }; + edge = derive2 { name="edge"; version="2.13.2"; sha256="1qjsxydfdzr2zrz5ns69w743rsfhxcmp7i13ax7pz5kry2sf0hl1"; depends=[Biobase jackstraw MASS qvalue snm sva]; }; + edgeR = derive2 { name="edgeR"; version="3.23.7"; sha256="0mwx3qqf2c8g9p03qxy2qixri8jm2wxd642zskl2173r05iba2sm"; depends=[limma locfit Rcpp]; }; + eegc = derive2 { name="eegc"; version="1.7.5"; sha256="1dhfzsi0avamj3bnp0p99ba3lc5dw83b0pl7idfhnh5yp4imv6nf"; depends=[AnnotationDbi clusterProfiler DESeq2 DOSE edgeR ggplot2 gplots igraph limma org_Hs_eg_db org_Mm_eg_db pheatmap R_utils S4Vectors sna wordcloud]; }; + eiR = derive2 { name="eiR"; version="1.21.1"; sha256="0zk1jf0n2kpajqpnlwwi2814vrbmy8gixnnkapflcbdl0z25m25z"; depends=[BiocGenerics ChemmineR DBI digest gespeR RcppAnnoy RCurl RUnit snow snowfall]; }; eisa = derive2 { name="eisa"; version="1.33.0"; sha256="18jk4iwav2r95wfjynl9dwnhsm5n97kq0i7xv5dhgw2gqh5yfv64"; depends=[AnnotationDbi Biobase BiocGenerics Category DBI genefilter isa2]; }; - enrichplot = derive2 { name="enrichplot"; version="1.1.2"; sha256="0hnh32gkayps5zh7hddgwrsyskq19i2wqbs1ph627fbckk1xqzlr"; depends=[AnnotationDbi cowplot DOSE ggplot2 ggraph ggridges GOSemSim igraph reshape2 UpSetR]; }; - ensemblVEP = derive2 { name="ensemblVEP"; version="1.23.0"; sha256="0sz0xsnw4ycq1rja9nzdzayralrnvnds6adxg1bzbgsgnhfi9qv0"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges S4Vectors SummarizedExperiment VariantAnnotation]; }; - ensembldb = derive2 { name="ensembldb"; version="2.5.2"; sha256="047c06v6d3qxw72bj0ynqvh3sk9jyv3pswf15i132qg12jq7yn8r"; depends=[AnnotationDbi AnnotationFilter Biobase BiocGenerics Biostrings curl DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges ProtGenerics Rsamtools RSQLite rtracklayer S4Vectors]; }; - epiNEM = derive2 { name="epiNEM"; version="1.5.0"; sha256="1kiaz5w2c793n3038qr8jyjgbw0shn8ljrargl0pk3d0i66cqah4"; depends=[BoolNet e1071 graph gtools igraph lattice latticeExtra minet nem pcalg RColorBrewer]; }; + enrichplot = derive2 { name="enrichplot"; version="1.1.7"; sha256="14i800cnlgc8bm8g5rlgl4rd9ajbpgljg3bhqh89zfgvvj6xy3v1"; depends=[AnnotationDbi cowplot DOSE europepmc ggplot2 ggplotify ggraph ggridges GOSemSim gridExtra igraph purrr RColorBrewer reshape2 UpSetR]; }; + ensemblVEP = derive2 { name="ensemblVEP"; version="1.23.1"; sha256="0sh1c2pmyp3lxabm2if4266mczb1as562hbyzxd3dq79n7s0wijj"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges S4Vectors SummarizedExperiment VariantAnnotation]; }; + ensembldb = derive2 { name="ensembldb"; version="2.5.9"; sha256="0sbrcfg4d8yqpls11ba05qgddg1y8s23fpq68560wrzippz4j2p7"; depends=[AnnotationDbi AnnotationFilter Biobase BiocGenerics Biostrings curl DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges ProtGenerics Rsamtools RSQLite rtracklayer S4Vectors]; }; + epiNEM = derive2 { name="epiNEM"; version="1.5.2"; sha256="1wqn5mqjxw6i21byig7b0cypiws6kjq6vjwcafg6dxry2fx675iw"; depends=[BoolNet e1071 graph gtools igraph lattice latticeExtra minet nem pcalg RColorBrewer]; }; epigenomix = derive2 { name="epigenomix"; version="1.21.0"; sha256="11vcdklmg7ghwr3da1n5bnm272m0wgqinhc1gj3i6wpgcvijnwr3"; depends=[beadarray Biobase BiocGenerics GenomeInfoDb GenomicRanges IRanges MCMCpack Rsamtools S4Vectors SummarizedExperiment]; }; - epivizr = derive2 { name="epivizr"; version="2.11.0"; sha256="14mmgfl9hqyx760l1c56hgfswbqpr34afvlyzjc459kyr8i57b5q"; depends=[epivizrData epivizrServer GenomicRanges IRanges S4Vectors]; }; - epivizrChart = derive2 { name="epivizrChart"; version="1.3.0"; sha256="0gbisd84w11fyl4zwwhakv2vv729ly9vh88zwixv46y4y1lln92v"; depends=[epivizrData epivizrServer htmltools rjson]; }; - epivizrData = derive2 { name="epivizrData"; version="1.9.0"; sha256="1r6pqsl8fyzqgwmg5msad2bsh7drgbyk39sn84pfrrv66zpp6yxj"; depends=[Biobase ensembldb epivizrServer GenomeInfoDb GenomicFeatures GenomicRanges IRanges OrganismDbi S4Vectors SummarizedExperiment]; }; - epivizrServer = derive2 { name="epivizrServer"; version="1.9.1"; sha256="01177j6yhiwbiarpj0v98dv4rcfhxyj9s7brxmzi9s3qrkfw9787"; depends=[httpuv mime R6 rjson]; }; - epivizrStandalone = derive2 { name="epivizrStandalone"; version="1.9.0"; sha256="1jkhwa3wc391x961hy9k5bhbp5zjijs7y9fjy836yc54kdxghdq4"; depends=[BiocGenerics epivizr epivizrServer GenomeInfoDb GenomicFeatures git2r S4Vectors]; }; + epivizr = derive2 { name="epivizr"; version="2.11.1"; sha256="08x7zbqpi3mrgkilibm0nrkqv7v4zr4l6a0xzgln3y4ns226lvy1"; depends=[epivizrData epivizrServer GenomicRanges IRanges S4Vectors]; }; + epivizrChart = derive2 { name="epivizrChart"; version="1.3.4"; sha256="18j25cyimifrblfipfjlazhpp10h606shgw9rq7b351gnr6a92ac"; depends=[BiocGenerics epivizrData epivizrServer htmltools rjson]; }; + epivizrData = derive2 { name="epivizrData"; version="1.9.4"; sha256="0fscvaq46rvnvpcbzli8mrk4ig7ik6q7yprgf1dmj40a7pcx48j3"; depends=[Biobase ensembldb epivizrServer GenomeInfoDb GenomicFeatures GenomicRanges IRanges OrganismDbi S4Vectors SummarizedExperiment]; }; + epivizrServer = derive2 { name="epivizrServer"; version="1.9.4"; sha256="0pxpmqbkwsh4g72zdr7c0dsxwxm538cs1fv6y1ns1mpiv9k4wmcl"; depends=[httpuv mime R6 rjson]; }; + epivizrStandalone = derive2 { name="epivizrStandalone"; version="1.9.1"; sha256="0snqd11np3zksrxmya5pb6fbwx5k3iipqika1ig3wmvry1czrsr9"; depends=[BiocGenerics epivizr epivizrServer GenomeInfoDb GenomicFeatures git2r S4Vectors]; }; erccdashboard = derive2 { name="erccdashboard"; version="1.15.0"; sha256="0g8b2ngfc5a6cagpiqh1q2k66s3d275r03z1yb2lvaqv1bprx0s7"; depends=[edgeR ggplot2 gplots gridExtra gtools limma locfit MASS plyr qvalue reshape2 ROCR scales stringr]; }; erma = derive2 { name="erma"; version="0.13.1"; sha256="01s2rpcbhd9hi2md5nzccral4ffp3xjl3qkkhm42q114dfbk5ccp"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel GenomeInfoDb GenomicFiles GenomicRanges ggplot2 Homo_sapiens IRanges rtracklayer S4Vectors shiny SummarizedExperiment]; }; - esATAC = derive2 { name="esATAC"; version="1.3.1"; sha256="0jdn6xhwvlsv6gh0lhmwkznlnv71dd3875qvna5livjvs2m8m84w"; depends=[AnnotationDbi BiocGenerics BiocInstaller Biostrings BSgenome ChIPseeker clusterProfiler corrplot DiagrammeR digest GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 igraph IRanges JASPAR2016 knitr magrittr motifmatchr R_utils Rbowtie2 Rcpp rJava rmarkdown Rsamtools rtracklayer S4Vectors ShortRead TFBSTools VennDiagram]; }; - esetVis = derive2 { name="esetVis"; version="1.7.1"; sha256="0xhgq2w38wfyg1ixh455ppi0880yfp44ld8y44l8yz2646qp904d"; depends=[Biobase hexbin MASS MLP mpm Rtsne]; }; + esATAC = derive2 { name="esATAC"; version="1.3.6"; sha256="1qwq2vchc1jyqy6h141ygkibz1i5nxfvciv7mqkz7sp6a3i2a149"; depends=[AnnotationDbi BiocGenerics BiocManager Biostrings BSgenome ChIPseeker clusterProfiler corrplot DiagrammeR digest GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 igraph IRanges JASPAR2016 knitr magrittr motifmatchr R_utils Rbowtie2 Rcpp rJava rmarkdown Rsamtools rtracklayer S4Vectors ShortRead TFBSTools VennDiagram]; }; + esetVis = derive2 { name="esetVis"; version="1.7.3"; sha256="0yr2rbpj2rddr50v4ws21jl16ylnjan5ag7m629lcrp34lxn7b73"; depends=[Biobase hexbin MASS MLP mpm Rtsne]; }; eudysbiome = derive2 { name="eudysbiome"; version="1.11.0"; sha256="0372hl9jsk225zjm3ca63q95x4rcnj4i13r7192gfxzisy7y9i36"; depends=[Biostrings plyr R_utils Rsamtools]; }; exomeCopy = derive2 { name="exomeCopy"; version="1.27.0"; sha256="003r5750vnadkvc19aaw8rf4qlfs1015nmndmsaazbg70dwkkdyl"; depends=[GenomeInfoDb GenomicRanges IRanges Rsamtools]; }; exomePeak = derive2 { name="exomePeak"; version="2.15.0"; sha256="1xyx8c1sflf98fp2588cvwmpz7f4bji6mwaw0297cj7h4893nb2a"; depends=[GenomicAlignments GenomicFeatures Rsamtools rtracklayer]; }; explorase = derive2 { name="explorase"; version="1.45.0"; sha256="18cch1m5k8sr9fjgfqv6ya2miwin89viq7sigpdv15r0xiz1js77"; depends=[limma rggobi RGtk2]; }; - fCCAC = derive2 { name="fCCAC"; version="1.7.1"; sha256="1cpma76xn4ddqyjsyhlgwa812v4p2kkby77diyy7gxha843ylncl"; depends=[ComplexHeatmap fda genomation GenomicRanges ggplot2 IRanges RColorBrewer S4Vectors]; }; - fCI = derive2 { name="fCI"; version="1.11.0"; sha256="0h94ivm66d3cnrf0cnrymq3b4a2v5jg38ylv8wylnidj5g98czap"; depends=[FNN gtools psych rgl VennDiagram zoo]; }; + fCCAC = derive2 { name="fCCAC"; version="1.7.2"; sha256="18hbjv0c53mr9751h27b1spn1kc47wvbkh0p35y68akjk815gfrw"; depends=[ComplexHeatmap fda genomation GenomicRanges ggplot2 IRanges RColorBrewer S4Vectors]; }; + fCI = derive2 { name="fCI"; version="1.11.1"; sha256="0b9n1vigqd7hvyqpgdaqdpz1iqmng2xl3zkgbasqyq71crcfchwv"; depends=[FNN gtools psych rgl VennDiagram zoo]; }; fabia = derive2 { name="fabia"; version="2.27.0"; sha256="0lp2h8px9f4czvld93v1cpra31375qwvyfaq336jc7ib2myvdclz"; depends=[Biobase]; }; factDesign = derive2 { name="factDesign"; version="1.57.0"; sha256="1kf98xygnq5pwjl7ak5jasrkgnrqhzpb81gljgsc0xp3a1mj37gn"; depends=[Biobase]; }; farms = derive2 { name="farms"; version="1.33.0"; sha256="1xbndc128m1f5jv8firhgsbgyqvwrxma22182p5axxjf5qwymnl9"; depends=[affy Biobase MASS]; }; @@ -997,159 +1070,166 @@ in with self; { fgsea = derive2 { name="fgsea"; version="1.7.1"; sha256="1aiiqc3jbanlxa6q3inqzj1h81dpar2i05bmaja38k7inciaysa0"; depends=[BiocParallel data_table fastmatch ggplot2 gridExtra Matrix Rcpp]; }; flagme = derive2 { name="flagme"; version="1.37.0"; sha256="0pjyi90l7k2i7bm93p9yyvrx18jmwcg0gaj2wixa0inyx9w5bymc"; depends=[CAMERA gcspikelite gplots MASS SparseM xcms]; }; flipflop = derive2 { name="flipflop"; version="1.19.0"; sha256="0283bks3jbscnvyj51jm3z47rvdpfmaj40bc2h1ck8md82jrhiqj"; depends=[GenomicRanges IRanges Matrix]; }; - flowAI = derive2 { name="flowAI"; version="1.9.1"; sha256="1j2a7aivy54vlf9vhk2d12wfzr3jdqq6582wd7pi2sg5j15mbl7v"; depends=[changepoint flowCore ggplot2 knitr plyr RColorBrewer reshape2 rmarkdown scales]; }; + flowAI = derive2 { name="flowAI"; version="1.11.3"; sha256="1ha80s8w2mcy72r2h6kj5sq0qrwkan4vzxpy2lf9frbpxrdkw696"; depends=[changepoint flowCore ggplot2 knitr plyr RColorBrewer reshape2 rmarkdown scales]; }; flowBeads = derive2 { name="flowBeads"; version="1.19.0"; sha256="16h0jd88nada5lsaxl7q1m3nqf7gzqc1hw9cv5q96qa8n13a50la"; depends=[Biobase flowCore knitr rrcov xtable]; }; flowBin = derive2 { name="flowBin"; version="1.17.0"; sha256="0axib7fny5n1h0fcisy2ll67m1illv41swwi1xdc37d2v605c6jk"; depends=[BiocGenerics class flowCore flowFP limma snow]; }; flowCHIC = derive2 { name="flowCHIC"; version="1.15.0"; sha256="1qsa6lkdang9x44wva0dwkgvv4kxqadk3jvjkg0q59bdf137irrs"; depends=[EBImage flowCore ggplot2 hexbin vegan]; }; - flowCL = derive2 { name="flowCL"; version="1.19.1"; sha256="1fwa5r4hxnfya5ylzgx61nakfalsc0ahvy3da4xj78l52w17bjah"; depends=[graph Rgraphviz SPARQL]; }; + flowCL = derive2 { name="flowCL"; version="1.19.3"; sha256="0rp3lrxk3sdwjv939kjkc246pwifidn6bvm6lk115yqa03ymii3w"; depends=[graph Rgraphviz SPARQL]; }; flowClean = derive2 { name="flowClean"; version="1.19.0"; sha256="091d79vx5w76xhhjm1zvjfyfv9pn4ni91a85yq2ca4laplsd0nqn"; depends=[bit changepoint flowCore sfsmisc]; }; - flowClust = derive2 { name="flowClust"; version="3.19.0"; sha256="1wkxfk1962cxwax2giyzva771rjxjcjy70vd9lsi7qkkxy5r3fdy"; depends=[Biobase BiocGenerics clue ellipse flowCore flowViz graph MCMCpack mnormt RBGL]; }; - flowCore = derive2 { name="flowCore"; version="1.47.3"; sha256="0dp0aks75xzihg1nbyh441v76pgl3ikznzg1csswlzsnll4s6gdv"; depends=[BH Biobase BiocGenerics corpcor graph matrixStats Rcpp rrcov]; }; + flowClust = derive2 { name="flowClust"; version="3.19.1"; sha256="0sdssv5bingj6zs0jp0ddfckkmbx3kljhh7snv74b0k0f3lndg4h"; depends=[Biobase BiocGenerics clue corpcor ellipse flowCore flowViz graph mnormt]; }; + flowCore = derive2 { name="flowCore"; version="1.47.9"; sha256="03wzl92yv5zg4rgbffd07lzb69xk3flf1fg640b8kw6527wbgfkz"; depends=[BH Biobase BiocGenerics corpcor graph MASS matrixStats Rcpp rrcov]; }; flowCyBar = derive2 { name="flowCyBar"; version="1.17.0"; sha256="1c3a12slk8z8y1vr8j09p2k5h2pw697ysk0a74p6n20sfl1zd3h9"; depends=[gplots vegan]; }; - flowDensity = derive2 { name="flowDensity"; version="1.15.0"; sha256="0ppvvcd9brm1xqrlz7cdj35knylahqyafaabm4b7qdnwf0nz578x"; depends=[car flowCore flowWorkspace gplots RFOC rgeos sp]; }; + flowDensity = derive2 { name="flowDensity"; version="1.15.2"; sha256="1qadx0lxvk74rapgmibp9fix19zdyg3illgl7qfnzkkadbjc1bbw"; depends=[car flowCore flowWorkspace gplots RFOC rgeos sp]; }; flowFP = derive2 { name="flowFP"; version="1.39.0"; sha256="02n85dv2qvxzwdi44mc7awvxc26nbwpbzawb0ikjv8gwf4www9ch"; depends=[Biobase BiocGenerics flowCore flowViz]; }; - flowFit = derive2 { name="flowFit"; version="1.19.0"; sha256="0ydpczklwaf0lr1vhz0fcp9qi29gc0hbn8l4qnfa4l7r2s3md418"; depends=[flowCore flowViz gplots kza minpack_lm]; }; - flowMap = derive2 { name="flowMap"; version="1.19.0"; sha256="1viidnbhw054q1vl4d6xqsz1h1y764w1jsjs9nqgfnpxqmrlgls2"; depends=[abind ade4 doParallel Matrix reshape2 scales]; }; - flowMatch = derive2 { name="flowMatch"; version="1.17.0"; sha256="0b1da6sfaykwj0dk4hbrj71q209jyarl0x40i5n324nj8r4ja7hz"; depends=[Biobase flowCore Rcpp]; }; + flowFit = derive2 { name="flowFit"; version="1.19.1"; sha256="0v7qdrskm47d2j16gag2lv63051hz182l7j5j2m36jh1fbddwhz6"; depends=[flowCore flowViz gplots kza minpack_lm]; }; + flowMap = derive2 { name="flowMap"; version="1.19.1"; sha256="1q3gvb4q2d3lh8828hlnxdrqzlsfm4chl5rvf99nbmapazz37r7g"; depends=[abind ade4 doParallel Matrix reshape2 scales]; }; + flowMatch = derive2 { name="flowMatch"; version="1.17.1"; sha256="0ymvn6nyxp95yb23y6lr0ks297m1djqaisz34wssxqk524zjrgbr"; depends=[Biobase flowCore Rcpp]; }; flowMeans = derive2 { name="flowMeans"; version="1.41.0"; sha256="1ixzwry1435w20w40z87yhscbgskbldqmrz0x7nqvlqp5yn1ax71"; depends=[Biobase feature flowCore rrcov]; }; flowMerge = derive2 { name="flowMerge"; version="2.29.0"; sha256="0imabypbjyn83jyb3isichi7fy4p4nkmsphcqbkimpjrfgc391kw"; depends=[feature flowClust flowCore foreach graph Rgraphviz rrcov snow]; }; - flowPeaks = derive2 { name="flowPeaks"; version="1.27.0"; sha256="12fw6vp5lar9y8k2hx8pjnr2km5bs1rjgdam3ifrfdj0rgicf6rk"; depends=[]; }; - flowPloidy = derive2 { name="flowPloidy"; version="1.7.0"; sha256="06lwd20c97lq5b9z11agvi4d9h601pxgzsi3xzkqp3q8c7xnpa1a"; depends=[car caTools flowCore knitr minpack_lm rmarkdown shiny]; }; + flowPeaks = derive2 { name="flowPeaks"; version="1.27.1"; sha256="07r0l4iyc9jrraswmd0j2lzrjw2ch7wkfniisr148k3a6gvhl0wq"; depends=[]; }; + flowPloidy = derive2 { name="flowPloidy"; version="1.7.3"; sha256="1m7vr6z9ca04xk876s9mc36hjr1wd9bb3kgx1hi7zd1aazzis1rb"; depends=[car caTools flowCore knitr minpack_lm rmarkdown shiny]; }; flowPlots = derive2 { name="flowPlots"; version="1.29.0"; sha256="0ylxkvhzghzybsi20lpprz430sl2d6mnrkbwp8bbsysr2ymsjml6"; depends=[]; }; - flowQ = derive2 { name="flowQ"; version="1.41.0"; sha256="0290mk6zj2f2y4qiks9z9lnrl87fa0024idmdcf7slwlngf59mfd"; depends=[BiocGenerics bioDist flowCore flowViz geneplotter IRanges lattice latticeExtra mvoutlier outliers parody RColorBrewer]; }; + flowQ = derive2 { name="flowQ"; version="1.41.1"; sha256="15n2w9958hp3w0rigx80p2gj5l4bg8zycv8h2l31ysdg34lij5r7"; depends=[BiocGenerics bioDist flowCore flowViz geneplotter IRanges lattice latticeExtra mvoutlier outliers parody RColorBrewer]; }; flowQB = derive2 { name="flowQB"; version="2.9.0"; sha256="0d4n8qxja851z4d7ran9wr4rhfa64mnkhz7rqwa0vggrq1y0ksja"; depends=[extremevalues flowCore]; }; - flowStats = derive2 { name="flowStats"; version="3.39.0"; sha256="1bz0saqkxznyq9ilabi1j4nwd18yk1p740asj7zlirqhiik2x20m"; depends=[Biobase BiocGenerics cluster fda flowCore flowViz flowWorkspace KernSmooth ks lattice MASS ncdfFlow]; }; + flowStats = derive2 { name="flowStats"; version="3.39.4"; sha256="1cj7dwvqa9x3lxblfvxmsl88zc91fbjhh1viy3s2m88kxl6517vr"; depends=[Biobase BiocGenerics cluster fda flowCore flowViz flowWorkspace KernSmooth ks lattice MASS ncdfFlow RColorBrewer]; }; flowTime = derive2 { name="flowTime"; version="1.5.0"; sha256="0qh2p696xh8xsi0j7d6s75kbf8ajm4virfs8c6c1rn48n4grhlpy"; depends=[flowCore plyr]; }; flowTrans = derive2 { name="flowTrans"; version="1.33.0"; sha256="1fqw49s9dgz4khq3m73bf8f7vy9xzhdl91n0rkmcnwq7kd6wm5n9"; depends=[flowClust flowCore flowViz]; }; flowType = derive2 { name="flowType"; version="2.19.0"; sha256="1313ak0n79pvhzpckrapbkzrzxhd8qnxawpvagm92lsdg5p79mfc"; depends=[BH Biobase flowClust flowCore flowMeans flowMerge Rcpp rrcov sfsmisc]; }; - flowUtils = derive2 { name="flowUtils"; version="1.45.0"; sha256="1vrbyzhifqaf47a73hac75s4dnsg6fys3nhhl1rf81hsjhqh7q80"; depends=[Biobase corpcor flowCore graph RUnit XML]; }; + flowUtils = derive2 { name="flowUtils"; version="1.45.2"; sha256="1x6ng8wvwqhq76r3wm62xyi29dq0086yvklv2ddv2gfc7ifzk8nl"; depends=[Biobase corpcor flowCore graph RUnit XML]; }; flowVS = derive2 { name="flowVS"; version="1.13.0"; sha256="16r8ig33ym1d8hp2hvxnlszifc0qpmd4vnqzg1nn31a4j3xf575r"; depends=[flowCore flowStats flowViz]; }; flowViz = derive2 { name="flowViz"; version="1.45.0"; sha256="076hjz0mvc7pygmlrapsgg6scsxkzd714yg4wq8r8fbbpblqhkxf"; depends=[Biobase flowCore hexbin IDPmisc KernSmooth lattice latticeExtra MASS RColorBrewer]; }; - flowWorkspace = derive2 { name="flowWorkspace"; version="3.29.4"; sha256="1669sl43r31ikj5mjzgmlynls994607xg0x2rz1y1dxcy84rb9vc"; depends=[BH Biobase BiocGenerics cytolib data_table dplyr flowCore flowViz graph gridExtra lattice latticeExtra matrixStats ncdfFlow RBGL RColorBrewer Rcpp Rgraphviz RProtoBufLib scales stringr XML]; }; - flowcatchR = derive2 { name="flowcatchR"; version="1.15.0"; sha256="0m1wbddxi2sifhpil00gd9vr27i75h30cw3a2m59hccxw4di139j"; depends=[abind BiocParallel colorRamps EBImage plotly shiny]; }; - fmcsR = derive2 { name="fmcsR"; version="1.23.0"; sha256="1m8v98qi3x2cwr74ynndb0ilw8m8n0dz7w7fpyv0fm3s0vy3x0rx"; depends=[BiocGenerics ChemmineR RUnit]; }; + flowWorkspace = derive2 { name="flowWorkspace"; version="3.29.10"; sha256="0qch9hbpxqwma1kg9jrmnyf7d9zc714pjybpzphkgx9c9cdbaqzy"; depends=[BH Biobase BiocGenerics cytolib data_table dplyr flowCore flowViz graph gridExtra lattice latticeExtra matrixStats ncdfFlow RBGL RColorBrewer Rcpp Rgraphviz RProtoBufLib scales stringr XML]; }; + flowcatchR = derive2 { name="flowcatchR"; version="1.15.3"; sha256="04njcbq0bi53pwkfrf489l3fws63w9l981cf4iadkadbk5dl2hav"; depends=[abind BiocParallel colorRamps EBImage plotly shiny]; }; + fmcsR = derive2 { name="fmcsR"; version="1.23.3"; sha256="1f2la9cx08yd3y96n2hkc6dzqvj5kya58rghr711axjmjfcigw2y"; depends=[BiocGenerics ChemmineR RUnit]; }; focalCall = derive2 { name="focalCall"; version="1.15.0"; sha256="1vnihlpxaplnjp7h9n3k3py0103qz98dnkm1p7hns93pf185ih05"; depends=[CGHcall]; }; frma = derive2 { name="frma"; version="1.33.0"; sha256="02n251fwg34f0mkvingrsv1n0v77cvmpmd44rs1a4qyl5nj3x9v6"; depends=[affy Biobase BiocGenerics DBI MASS oligo oligoClasses preprocessCore]; }; frmaTools = derive2 { name="frmaTools"; version="1.33.0"; sha256="1w62s3i6q92ka44dy8sqid21fgpjjghmnyavj3swx5czpn476vny"; depends=[affy Biobase DBI preprocessCore]; }; - funtooNorm = derive2 { name="funtooNorm"; version="1.5.0"; sha256="175np47a1n3l9dkpfza9wdndxk3adk9np87c8hi4ybhjbx9w8bj5"; depends=[GenomeInfoDb IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest matrixStats minfi pls]; }; + funtooNorm = derive2 { name="funtooNorm"; version="1.5.1"; sha256="0pqh1hiblr6989wvdx7fmxkkj451xijjj6z9jgqz2c08qpk2d4h8"; depends=[GenomeInfoDb IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest matrixStats minfi pls]; }; gCMAP = derive2 { name="gCMAP"; version="1.25.0"; sha256="0mp0cg33slfpnqzk2fsggpb3dfgq95isj42lia0i3hkwkdfcisly"; depends=[annotate AnnotationDbi bigmemory bigmemoryExtras Biobase Category DESeq genefilter GSEABase GSEAlm limma Matrix]; }; gCMAPWeb = derive2 { name="gCMAPWeb"; version="1.21.0"; sha256="15fmiii9kkiy1p9d2h7hg9fi3kacifz6113hpkzkk0lic4phncg5"; depends=[annotate AnnotationDbi Biobase BiocGenerics brew gCMAP GSEABase hwriter Rook yaml]; }; - gCrisprTools = derive2 { name="gCrisprTools"; version="1.9.1"; sha256="1nscfxbyvy596sak9lj5g1wcbk7zprgy5654bbv69ain9p1i3kzc"; depends=[Biobase ggplot2 limma PANTHER_db rmarkdown RobustRankAggreg]; }; + gCrisprTools = derive2 { name="gCrisprTools"; version="1.9.3"; sha256="1msp2xfd3h1bj04abad714r9rmgbr9w6g26lj7s8j451jjlw57na"; depends=[Biobase ggplot2 limma PANTHER_db rmarkdown RobustRankAggreg]; }; gQTLBase = derive2 { name="gQTLBase"; version="1.13.0"; sha256="0rszhclakgc0xyg8jdb9mxgwaqcb28rcs9pyrg31d0wxi44c90w2"; depends=[BatchJobs BBmisc BiocGenerics bit doParallel ff ffbase foreach GenomicFiles GenomicRanges rtracklayer S4Vectors SummarizedExperiment]; }; + gQTLstats = derive2 { name="gQTLstats"; version="1.13.1"; sha256="0apicd22s2yx57ypqvnmxkh3ca06r5cq3mj7x3hz57z9sv99bq1w"; depends=[AnnotationDbi BatchJobs BBmisc beeswarm Biobase BiocGenerics doParallel dplyr erma ffbase foreach GenomeInfoDb GenomicFeatures GenomicFiles GenomicRanges ggbeeswarm ggplot2 gQTLBase HardyWeinberg Homo_sapiens IRanges limma mgcv plotly reshape2 S4Vectors shiny snpStats SummarizedExperiment VariantAnnotation]; }; gaga = derive2 { name="gaga"; version="2.27.0"; sha256="09q5xfki8nnp5z4ia0l07pnvsmiwag7ahr1bxbic9aajql873ipk"; depends=[Biobase coda EBarrays mgcv]; }; - gage = derive2 { name="gage"; version="2.31.0"; sha256="1lkq0xq7qz8vzd0y996c8yskh8wkm15hqs68krbs9z08scwjzpqg"; depends=[AnnotationDbi graph KEGGREST]; }; + gage = derive2 { name="gage"; version="2.31.2"; sha256="0m4mp78g3sxa19rkw9p4d6sxw1ic9km6z5hir8d1lqg0hmv9y2ki"; depends=[AnnotationDbi graph KEGGREST]; }; gaggle = derive2 { name="gaggle"; version="1.49.0"; sha256="0bi19b9ndccrky2i89scjzgna5b2gj0p74licynn8pm1jfwla584"; depends=[graph rJava RUnit]; }; - gaia = derive2 { name="gaia"; version="2.25.0"; sha256="009lclb7dvy1mgxzxmp8nywcbq0jdq26qdla0vl7jb8p8vjp5k1c"; depends=[]; }; - garfield = derive2 { name="garfield"; version="1.9.0"; sha256="1pndkw2an642ldgz0lw07l70gybj5npfs9w8qi2wm77fqfih8lj0"; depends=[]; }; - gcapc = derive2 { name="gcapc"; version="1.5.0"; sha256="196fi5c1bhaq7qfxvw8jfbfahjygk1a6ykkjlrbqkhk60lzk9gbl"; depends=[BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicRanges IRanges MASS matrixStats Rsamtools S4Vectors]; }; + gaia = derive2 { name="gaia"; version="2.25.3"; sha256="10qcjcfqiwa2xcgh2jpiq5hp8i8ihbl4nz503ndcz3j54rw3pjfn"; depends=[]; }; + garfield = derive2 { name="garfield"; version="1.9.1"; sha256="1fj196imnr9vb8pg6rxf46n5yw7v3g1w0q8h49psrvw7zrmzknsg"; depends=[]; }; + gcapc = derive2 { name="gcapc"; version="1.5.1"; sha256="1fk3vqxl6xpf4xhmacsn3ywwixs1brm24pfyshlbwp27rwj3jpzw"; depends=[BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicRanges IRanges MASS matrixStats Rsamtools S4Vectors]; }; gcatest = derive2 { name="gcatest"; version="1.11.0"; sha256="0x0k557fydigj81610a39b8hg973wbjsfj0ailpjfa1grp77csa1"; depends=[lfa]; }; - gcrma = derive2 { name="gcrma"; version="2.53.0"; sha256="14gcna1sagqizaryq5hv5907hw7agds8v0s2n1hd8k1yrpayhkwc"; depends=[affy affyio Biobase BiocInstaller Biostrings XVector]; }; - gdsfmt = derive2 { name="gdsfmt"; version="1.17.2"; sha256="13rkbhjis5fjzalj03bpckq4w177c6v2m4p7743yvjhqhyyah9pq"; depends=[]; }; - geNetClassifier = derive2 { name="geNetClassifier"; version="1.21.0"; sha256="0ikpsmjwbiq8kidyvllx51ih0b7jnw9s1nz6z6hfz21zf98kz9p6"; depends=[Biobase e1071 EBarrays minet]; }; + gcrma = derive2 { name="gcrma"; version="2.53.1"; sha256="0qlvr4lgkddyrdvf81z60zzlbq0x7abdlgsgw1xr1xabmp7wbkrs"; depends=[affy affyio Biobase BiocManager Biostrings XVector]; }; + gdsfmt = derive2 { name="gdsfmt"; version="1.17.6"; sha256="0x44n0qrcq82kxd8w1zlbfsgmf2yxxnf1i5h9z7ajlcz46cwgaxn"; depends=[]; }; + geNetClassifier = derive2 { name="geNetClassifier"; version="1.21.1"; sha256="0fjkm6bg4g2qr5xyjjyhrpm9iijhmgy6rwd38iwimlq3qqgnm819"; depends=[Biobase e1071 EBarrays minet]; }; geecc = derive2 { name="geecc"; version="1.15.0"; sha256="0wfa0a4hlwvjsjvxk7m6lgjxjvph3392a4kskg2y1vphh916qnxr"; depends=[gplots hypergea MASS Rcpp]; }; genArise = derive2 { name="genArise"; version="1.57.0"; sha256="08hrc2y06prmacdzrd3qnlbyzrr9127jgglq7babrnhw0dffjl96"; depends=[locfit tkrplot xtable]; }; - genbankr = derive2 { name="genbankr"; version="1.9.0"; sha256="0nzbf189w2rg9hy7h7qcw3jpz9lhl2yq57rhps29lgmizgdml8qp"; depends=[Biobase BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges IRanges rtracklayer S4Vectors VariantAnnotation]; }; + genbankr = derive2 { name="genbankr"; version="1.9.2"; sha256="1ba891irw0carh6pg2r6v50g5g7am1k09zyw450rz878sfka50cj"; depends=[Biobase BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges IRanges rtracklayer S4Vectors VariantAnnotation]; }; geneAttribution = derive2 { name="geneAttribution"; version="1.7.0"; sha256="1snpd1xy66kaj2mb8xjasgm3bipydxbrbcpvp5bny9shvk6di0cf"; depends=[BiocGenerics GenomeInfoDb GenomicFeatures GenomicRanges IRanges org_Hs_eg_db rtracklayer]; }; geneClassifiers = derive2 { name="geneClassifiers"; version="1.5.0"; sha256="0qwqb1sq6bw688br5c5lxvc7dxwg1qwwb30dn9pklgfgpnjwp86n"; depends=[Biobase BiocGenerics]; }; geneRecommender = derive2 { name="geneRecommender"; version="1.53.0"; sha256="1qrlk46y1hkgva2yrf8x2smy82p4kmzjpr7kyk9381rfl64nn18q"; depends=[Biobase]; }; geneRxCluster = derive2 { name="geneRxCluster"; version="1.17.0"; sha256="0vlhskyymdnbigdq1qj9gimklcmzvybh74zn7f65if5ssqdgmj10"; depends=[GenomicRanges IRanges]; }; - geneXtendeR = derive2 { name="geneXtendeR"; version="1.7.0"; sha256="0j3k3ijq7ml52avs6np7q5137fr348xi5012dkw1nmn4sqm9dwpy"; depends=[AnnotationDbi data_table dplyr GO_db networkD3 org_Ag_eg_db org_Bt_eg_db org_Ce_eg_db org_Cf_eg_db org_Dm_eg_db org_Dr_eg_db org_Gg_eg_db org_Hs_eg_db org_Mm_eg_db org_Mmu_eg_db org_Pt_eg_db org_Rn_eg_db org_Sc_sgd_db org_Ss_eg_db org_Xl_eg_db RColorBrewer rtracklayer SnowballC tm wordcloud]; }; - genefilter = derive2 { name="genefilter"; version="1.63.0"; sha256="0wn6gwj8v3xl11mhx40529hlssay79n24vn071saq2y475bxhgkl"; depends=[annotate AnnotationDbi Biobase S4Vectors survival]; }; - genefu = derive2 { name="genefu"; version="2.13.0"; sha256="1i0w1bhg93gpjwn2w2k9kz3z99vdifdf7a9nza8d79lirj4512p4"; depends=[AIMS amap biomaRt iC10 limma mclust survcomp]; }; - geneplast = derive2 { name="geneplast"; version="1.7.0"; sha256="1ydcahw9imi281xdgpr7asihavsks3jjh52nhdrx0qn5plml254r"; depends=[ape igraph snow]; }; + geneXtendeR = derive2 { name="geneXtendeR"; version="1.7.11"; sha256="1kws224q6rhzmdrgfv2695l5aah3hz6r5vacwl5akg2bja2v42yv"; depends=[AnnotationDbi BiocStyle data_table dplyr GO_db networkD3 org_Rn_eg_db RColorBrewer rtracklayer SnowballC tm wordcloud]; }; + genefilter = derive2 { name="genefilter"; version="1.63.2"; sha256="0kx0fv9gjknffhvgz65y36hxcfi25rii6m35caxdrkcfm3cnrc6l"; depends=[annotate AnnotationDbi Biobase S4Vectors survival]; }; + genefu = derive2 { name="genefu"; version="2.13.1"; sha256="0b1xrxfp1swfsvvrr1nkkkmjjb6bxbjhvvm2fl2463mmgy3qdsn6"; depends=[AIMS amap biomaRt iC10 limma mclust survcomp]; }; + geneplast = derive2 { name="geneplast"; version="1.7.2"; sha256="18g39wzkcnkpp4v2fwbh3ff84b8fcwfn723hpfyla7857qjm6krp"; depends=[ape igraph snow]; }; geneplotter = derive2 { name="geneplotter"; version="1.59.0"; sha256="1yqxqxchjn31sqw3csk5y3jmshb3v5580q245skam5r5v2nw5lhb"; depends=[annotate AnnotationDbi Biobase BiocGenerics lattice RColorBrewer]; }; genoCN = derive2 { name="genoCN"; version="1.33.0"; sha256="1rcly2dfm93lbsc1inm3z669l19k213zyq31kb4kkg1cnam2cflv"; depends=[]; }; - genomation = derive2 { name="genomation"; version="1.13.0"; sha256="04101y44lnxlxkyhb2gb4d0wr9cy1s1c31dsfhqgl1rhy8rxi5b4"; depends=[Biostrings BSgenome data_table GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridBase impute IRanges matrixStats plotrix plyr Rcpp readr reshape2 Rsamtools rtracklayer RUnit S4Vectors seqPattern]; }; + genomation = derive2 { name="genomation"; version="1.13.1"; sha256="038fnkv0m2r47mm2cg2fmrzq776j0jfskppi7p0872rx59r0vl6y"; depends=[Biostrings BSgenome data_table GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridBase impute IRanges matrixStats plotrix plyr Rcpp readr reshape2 Rsamtools rtracklayer RUnit S4Vectors seqPattern]; }; genomeIntervals = derive2 { name="genomeIntervals"; version="1.37.0"; sha256="1xinqj7zzwjxx6qxi6mxrws2ajjm8cy7g9v1773x7mh47w9rz7mw"; depends=[BiocGenerics GenomeInfoDb GenomicRanges intervals IRanges S4Vectors]; }; genomes = derive2 { name="genomes"; version="3.11.0"; sha256="0vvc43ih4idj6jakm4jvwynvi4v90nndvbz18kb7nxb7fh1bl9m3"; depends=[curl readr]; }; genoset = derive2 { name="genoset"; version="1.37.0"; sha256="0awbbvhz1qzra92ghal5wrqrkya4v0wd15q75dmqxb5xx36s8if6"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges S4Vectors SummarizedExperiment]; }; - genotypeeval = derive2 { name="genotypeeval"; version="1.13.1"; sha256="0qlzqfzpb74prq6b7zg77d610i8hj0d2f7jhi4l1difcgf8y7j2j"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicRanges ggplot2 IRanges rtracklayer VariantAnnotation]; }; - genphen = derive2 { name="genphen"; version="1.9.0"; sha256="1bps7mgznp5by1kfwmapnfj3vkdqiz3p3816kg9jmg7iggxn8gih"; depends=[Biostrings doParallel e1071 foreach ranger rstan]; }; + genotypeeval = derive2 { name="genotypeeval"; version="1.13.2"; sha256="10zz9jd1xsk09gh3mkm23jmqi4j5kv7d5fbjwlr2bxq4z2yjl8h4"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicRanges ggplot2 IRanges rtracklayer VariantAnnotation]; }; + genphen = derive2 { name="genphen"; version="1.9.49"; sha256="0mdr79x7a036rrjdh1aqxnxskgsvvjbzyvlgcrf9jxh2yf45ciq1"; depends=[Biostrings doParallel e1071 foreach ranger rstan]; }; gep2pep = derive2 { name="gep2pep"; version="1.1.1"; sha256="0h6qf7fl2hmg5chv6g9qfj5ih4mfc6xmihqny9pzg277i5gwmdsj"; depends=[Biobase digest foreach GSEABase iterators repo rhdf5 XML]; }; gespeR = derive2 { name="gespeR"; version="1.13.0"; sha256="1qc9d8vp5s5rzw7bqbfm2n5l23yfk9d3kpmhyd4hnr9jb2h4jypp"; depends=[Biobase biomaRt cellHTS2 doParallel dplyr foreach ggplot2 glmnet Matrix reshape2]; }; - ggbio = derive2 { name="ggbio"; version="1.29.0"; sha256="0skf5m8qglvv2y70jppjblvpl94cgimns02kprsqp85ghmbshy7s"; depends=[AnnotationDbi AnnotationFilter Biobase BiocGenerics Biostrings biovizBase BSgenome ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges GGally ggplot2 gridExtra gtable Hmisc IRanges OrganismDbi reshape2 Rsamtools rtracklayer S4Vectors scales SummarizedExperiment VariantAnnotation]; }; - ggcyto = derive2 { name="ggcyto"; version="1.9.10"; sha256="17pvxml685gic39ycgq2crwnznw7ih0g5bhynxziffnfg0zqb6fc"; depends=[data_table flowCore flowWorkspace ggplot2 gridExtra ncdfFlow plyr RColorBrewer scales]; }; - ggtree = derive2 { name="ggtree"; version="1.13.0"; sha256="1zkaasmb2y1k8hqjr7cbvhasmv1ykclhfqj3h0s6m6yvh2iql9nb"; depends=[ape dplyr ggplot2 magrittr purrr rlang rvcheck scales tibble tidyr tidytree treeio]; }; - girafe = derive2 { name="girafe"; version="1.33.0"; sha256="0jdckfnsfvcqf7gnfbpxw12q0la9cxzfmhhy4n492fqavnzpbfgj"; depends=[Biobase BiocGenerics Biostrings genomeIntervals intervals IRanges Rsamtools S4Vectors ShortRead]; }; - globalSeq = derive2 { name="globalSeq"; version="1.9.1"; sha256="105sxbs03xdfv6ikl517sj14wzn0cc92lxv5yfzabj2ys8911dl1"; depends=[]; }; - globaltest = derive2 { name="globaltest"; version="5.35.0"; sha256="150mf64cr528jzcpc9ydfs1kf9dwrr8xnw47abpkxgmfmqi6jl01"; depends=[annotate AnnotationDbi Biobase survival]; }; - gmapR = derive2 { name="gmapR"; version="1.23.0"; sha256="0c6chbf3kzx3z57gs36b0bi1bc58514sklxkplv80z7xnvxs8pl9"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; + ggbio = derive2 { name="ggbio"; version="1.29.5"; sha256="1aqj3m7jkjdzwvnk8il74v05gybd3n6b056mlwq8slmmpyngjnc6"; depends=[AnnotationDbi AnnotationFilter Biobase BiocGenerics Biostrings biovizBase BSgenome ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges GGally ggplot2 gridExtra gtable Hmisc IRanges OrganismDbi reshape2 rlang Rsamtools rtracklayer S4Vectors scales SummarizedExperiment VariantAnnotation]; }; + ggcyto = derive2 { name="ggcyto"; version="1.9.13"; sha256="0dhwv19dny4490jg2p7bbmzqnpyf04zms33vwssaf7xwy7i8h0q9"; depends=[data_table flowCore flowWorkspace ggplot2 gridExtra ncdfFlow plyr RColorBrewer rlang scales]; }; + ggtree = derive2 { name="ggtree"; version="1.13.6"; sha256="0hbw03ixzvmiqgacvi41mb8kjnh7s78z39900b532qd1ghmg8xrq"; depends=[ape dplyr ggplot2 magrittr purrr rlang rvcheck scales tibble tidyr tidytree treeio]; }; + girafe = derive2 { name="girafe"; version="1.33.2"; sha256="1b7sqnbj3a6p8zdaf8w7s19fijiw5ciqchxsi8i7ali46fqvqhbs"; depends=[Biobase BiocGenerics Biostrings genomeIntervals intervals IRanges Rsamtools S4Vectors ShortRead]; }; + glmSparseNet = derive2 { name="glmSparseNet"; version="0.99.36"; sha256="1qhjrpd70qfizkk64kl4spwwq8gjk7zg6ypj5gyk6pn98myvk2bm"; depends=[biomaRt dplyr forcats futile_logger ggplot2 glmnet loose_rock Matrix MultiAssayExperiment readr reshape2 rlang sparsebn sparsebnUtils STRINGdb stringr SummarizedExperiment survminer]; }; + globalSeq = derive2 { name="globalSeq"; version="1.9.4"; sha256="146zfaz0w3gdic5q50vqzynr6gzv6b0c417yi1x350ir3qn2vczk"; depends=[]; }; + globaltest = derive2 { name="globaltest"; version="5.35.1"; sha256="0q72cvh11qffkr6c17pz7a5d2wi2csk37pq9fjda11mmx1g01paq"; depends=[annotate AnnotationDbi Biobase survival]; }; + gmapR = derive2 { name="gmapR"; version="1.23.1"; sha256="0qyn39vcp7a84xjn7n4cyhk47yw9yxn9mwq81kz3fjljafy2pv9z"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; goProfiles = derive2 { name="goProfiles"; version="1.43.0"; sha256="19r3h8rnfs826aldlgkjgsllk4wj95rq7lq37qd927bjgvi4kbnj"; depends=[AnnotationDbi Biobase CompQuadForm GO_db stringr]; }; - goSTAG = derive2 { name="goSTAG"; version="1.5.0"; sha256="13bnzz3adj9186sp992fbjp9442nvp7f0a80jnz1nygdr0d45i7m"; depends=[AnnotationDbi biomaRt GO_db memoise]; }; + goSTAG = derive2 { name="goSTAG"; version="1.5.1"; sha256="1nazixjbh90460iqc7hgsgsilzaknjym639c5mmxcxdas96vmry1"; depends=[AnnotationDbi biomaRt GO_db memoise]; }; goTools = derive2 { name="goTools"; version="1.55.0"; sha256="1lzgsdqvwrxckg5pdbmnxldifrsm7zyvl72pl3sz8x2997b4lc97"; depends=[AnnotationDbi GO_db]; }; goseq = derive2 { name="goseq"; version="1.33.0"; sha256="102w1cxz2ab0gyzamy9rcdbf73bgkvqrm0lxasz6m2h79j9gfmc9"; depends=[AnnotationDbi BiasedUrn BiocGenerics geneLenDataBase GO_db mgcv]; }; + gpart = derive2 { name="gpart"; version="0.99.19"; sha256="05nzlyn7n1a73qdrg8wrwjwcix4i7y43g6bycbfw07zxps8a3472"; depends=[AnnotationDbi biomaRt data_table GenomicRanges Homo_sapiens igraph IRanges OrganismDbi Rcpp TxDb_Hsapiens_UCSC_hg38_knownGene]; }; gpls = derive2 { name="gpls"; version="1.53.0"; sha256="02yca8lllmq7lmbg55kn3yhsb0s9d2b828aj08lsp5hxmyill36k"; depends=[]; }; - gprege = derive2 { name="gprege"; version="1.25.0"; sha256="123ggwjdkc2la9vbv6kmv7l7pg0wz3jzk4q0df5zm38a3nr8gy7p"; depends=[gptk]; }; - graph = derive2 { name="graph"; version="1.59.0"; sha256="1pcn9rr9j679g6hgsh235nar5via1rmgj1dqpyp7sl9zfjrcim2p"; depends=[BiocGenerics]; }; - graphite = derive2 { name="graphite"; version="1.27.2"; sha256="0c3ha2hjpzwbrv5jh2376ayd2c7j9z857m70rx8xiv5bn3kzvazz"; depends=[AnnotationDbi checkmate graph httr rappdirs]; }; - groHMM = derive2 { name="groHMM"; version="1.15.0"; sha256="1q18f8ibjwik01n54c373fss82jwamik430irgaya8q5b5659c0d"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges MASS rtracklayer S4Vectors]; }; + gprege = derive2 { name="gprege"; version="1.25.2"; sha256="0qlbvss2hk3f3bfi4k4jcpyqwishkxsqq9cv846cbnkryn1xnrih"; depends=[gptk]; }; + graph = derive2 { name="graph"; version="1.59.2"; sha256="1vncpr60yl63kwlxdp1b15r81ymf28whzkkd9mz5r8f6jz184h0g"; depends=[BiocGenerics]; }; + graphite = derive2 { name="graphite"; version="1.27.6"; sha256="009gjkmnjr8y6j8dz9h19bn16qkzhvknqazrdm4pf86pn8w2gy2w"; depends=[AnnotationDbi checkmate graph httr rappdirs]; }; + groHMM = derive2 { name="groHMM"; version="1.15.1"; sha256="1a6c40bfsskh0adaqjvimn6bysfgz24lga9byznp2cf2757i9bps"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges MASS rtracklayer S4Vectors]; }; gsean = derive2 { name="gsean"; version="1.1.0"; sha256="0aar598qdhppzkzrrmhzd1nkn7i3xci401yz3w5dsgz27fy12c18"; depends=[fgsea PPInfer]; }; - gtrellis = derive2 { name="gtrellis"; version="1.13.1"; sha256="1nz1hq1nmn3759cnf7w2svkk7v6lzrp85l49vjwy7wfrpk612wch"; depends=[circlize GenomicRanges GetoptLong IRanges]; }; - gwascat = derive2 { name="gwascat"; version="2.13.1"; sha256="1y595365q7hw84sgg6c307d3h1bryml4rxq1hg2vcr2ai0cbb065"; depends=[AnnotationDbi AnnotationHub BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 graph Gviz Homo_sapiens IRanges Rsamtools rtracklayer S4Vectors snpStats SummarizedExperiment VariantAnnotation]; }; - gwasurvivr = derive2 { name="gwasurvivr"; version="0.99.38"; sha256="0dcza6pscq9lndk3x1bc139fh3r61lwfrm88vizyaini7xyzd2p0"; depends=[GWASTools matrixStats SummarizedExperiment survival VariantAnnotation]; }; - h5vc = derive2 { name="h5vc"; version="2.15.0"; sha256="001lz9pjr7ddlw8v69nvhmbdzzx643vd5akl7dzjx4z0kg3xyf55"; depends=[abind BatchJobs BiocParallel Biostrings GenomeInfoDb GenomicRanges ggplot2 gridExtra h5vcData IRanges reshape rhdf5 Rsamtools S4Vectors]; }; + gtrellis = derive2 { name="gtrellis"; version="1.13.3"; sha256="0pg30gnbmsn498isqw3g26a5pzxbq1k0hbz4sd986ak1whgac1q3"; depends=[circlize GenomicRanges GetoptLong IRanges]; }; + gwascat = derive2 { name="gwascat"; version="2.13.5"; sha256="0p4l8skyyjblqzlcb13sj29sy6x62fakb5i56d757z6ic8pi84kx"; depends=[AnnotationDbi AnnotationHub BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 gQTLstats graph Gviz Homo_sapiens IRanges Rsamtools rtracklayer S4Vectors snpStats SummarizedExperiment VariantAnnotation]; }; + gwasurvivr = derive2 { name="gwasurvivr"; version="0.99.46"; sha256="137a4vclz7h462xf2aia47kaigz2gchlhxl6v7ycv4rq48i6qjrq"; depends=[GWASTools matrixStats SNPRelate SummarizedExperiment survival VariantAnnotation]; }; + h5vc = derive2 { name="h5vc"; version="2.15.1"; sha256="1gfch3p8ylws4g22kd6xs79wsm6x65yfdaqxjhqp0cgsjlyrr29h"; depends=[abind BatchJobs BiocParallel Biostrings GenomeInfoDb GenomicRanges ggplot2 gridExtra h5vcData IRanges reshape rhdf5 Rsamtools S4Vectors]; }; hapFabia = derive2 { name="hapFabia"; version="1.23.0"; sha256="0dhq26aqqmnzmx3cnwmmrqa8zx5gxq48is1wmljvfn86qixr70xr"; depends=[Biobase fabia]; }; heatmaps = derive2 { name="heatmaps"; version="1.5.0"; sha256="0lz2cxw3fxyvnmnzk95k791x8x3vjn5cif2bqp3zv2rlkwgdjd7m"; depends=[BiocGenerics Biostrings EBImage GenomeInfoDb GenomicRanges IRanges KernSmooth Matrix plotrix RColorBrewer]; }; hiAnnotator = derive2 { name="hiAnnotator"; version="1.15.0"; sha256="12q17c31j1q1jbh1z1ddlcml1wxin5s32yz9xk7dd7bxa81frpmg"; depends=[BSgenome dplyr foreach GenomicRanges ggplot2 iterators rtracklayer scales]; }; hiReadsProcessor = derive2 { name="hiReadsProcessor"; version="1.17.0"; sha256="1qad1winpzjwjn9wnr7xvmspza2j0islsdqh7aig767svipw8870"; depends=[BiocGenerics BiocParallel Biostrings dplyr GenomicAlignments GenomicRanges hiAnnotator readxl rSFFreader sonicLength]; }; - hicrep = derive2 { name="hicrep"; version="1.5.0"; sha256="17k4wynjjbailalm4h0gghw5fz7gavjpdzm3ibk1gih46l24fr0d"; depends=[]; }; + hicrep = derive2 { name="hicrep"; version="1.5.1"; sha256="0vjif93dnjjqrd15gxflwlhncrr3sdrp3hw9944p4pmd1xq38i3i"; depends=[]; }; hierGWAS = derive2 { name="hierGWAS"; version="1.11.0"; sha256="0wfv8pxnm8v1lwj1cbk4d7v0cyjzra8nm8gaawwr0aqcsg7ksp2f"; depends=[fastcluster fmsb glmnet]; }; - hipathia = derive2 { name="hipathia"; version="1.1.1"; sha256="1x7aa8vbmzrfw5psyc4a7qcsnhfgcynfvp5k7qba4q5cp85gcgym"; depends=[AnnotationHub coin DelayedArray igraph limma matrixStats MultiAssayExperiment preprocessCore S4Vectors servr SummarizedExperiment]; }; - hmdbQuery = derive2 { name="hmdbQuery"; version="1.1.1"; sha256="1rkyh115mn65rq90i7g3idw1n856v3r6139rbvaai7939rbi4gg9"; depends=[S4Vectors XML]; }; + hierinf = derive2 { name="hierinf"; version="0.99.3"; sha256="0rwwdwgx1p96vgfszp01i85wa56d9djkrjnzphgcv5962smd0wka"; depends=[fmsb glmnet]; }; + hipathia = derive2 { name="hipathia"; version="1.1.3"; sha256="08yx1jpfz08zsldxvjsz9957rp1wk2744kb8248k5rwf4fmcdp4w"; depends=[AnnotationHub coin DelayedArray igraph limma matrixStats MultiAssayExperiment preprocessCore S4Vectors servr SummarizedExperiment]; }; + hmdbQuery = derive2 { name="hmdbQuery"; version="1.1.3"; sha256="0gvbfiibnb3w588ri385wwyg1x3my7a3ay6sacbjhh0j6amx9g7p"; depends=[S4Vectors XML]; }; hopach = derive2 { name="hopach"; version="2.41.0"; sha256="1i329clrw9bjxkchinadprix36xjak5x6i1zqpdj27kyr8w26gn2"; depends=[Biobase BiocGenerics cluster]; }; - hpar = derive2 { name="hpar"; version="1.23.2"; sha256="04h4xfmappx0vipw1fa9kd8n9hs4cpcfsllxcrq77akndkf1dc92"; depends=[]; }; + hpar = derive2 { name="hpar"; version="1.23.4"; sha256="0nf8w8qn63zrq2y5i5imrwv242cc884lzi92jldd24ainybp362h"; depends=[]; }; htSeqTools = derive2 { name="htSeqTools"; version="1.29.5"; sha256="0rigcwd8mc3kjsj0kxzxnspzqz0d1i58vav71p7a4cx76yrzi5z1"; depends=[Biobase BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges MASS S4Vectors]; }; hyperdraw = derive2 { name="hyperdraw"; version="1.33.0"; sha256="0qcp9p3n7gxskvw8afz7yr2msm0gikl7v3dvzvrhfypad9czplx0"; depends=[graph hypergraph Rgraphviz]; }; hypergraph = derive2 { name="hypergraph"; version="1.53.0"; sha256="1mj14bgkbs3p0smf6phfig2rcf7kd88d85djr6rq1c3vpiyhpyx3"; depends=[graph]; }; iASeq = derive2 { name="iASeq"; version="1.25.0"; sha256="0p4m13k5n974469xh8vhz8xd5b37ill3i9jmglq0fa47n7rbdjz1"; depends=[]; }; iBBiG = derive2 { name="iBBiG"; version="1.25.0"; sha256="1dbcazr88ac38g58jgr9byqaql36jvfn5bmr8gibn3hr187c5ypf"; depends=[ade4 biclust xtable]; }; - iBMQ = derive2 { name="iBMQ"; version="1.21.0"; sha256="19f1iqfcdsq0lg9hbl65qwb7lwp9n36vrdnyah63dn7k3c23p5x1"; depends=[Biobase ggplot2]; }; - iCARE = derive2 { name="iCARE"; version="1.9.0"; sha256="0z884xysrf00h56l4djq1yrm8478s4f3jqq0bz6sf5wqzibr492k"; depends=[]; }; - iCNV = derive2 { name="iCNV"; version="1.1.0"; sha256="1kqsrw6pq4lcnfnf5ak4pdmcv3cr7p1jhmk304g5ywxpbd2fdfp9"; depends=[CODEX data_table dplyr fields ggplot2 rlang tidyr truncnorm]; }; + iBMQ = derive2 { name="iBMQ"; version="1.21.1"; sha256="11bkzp25bv5j4x2xanj5cq173pwhl1av5l7kb94vhw80yhbk9l4r"; depends=[Biobase ggplot2]; }; + iCARE = derive2 { name="iCARE"; version="1.9.7"; sha256="0bbzn5yx2i7ijfvsglzsi3f7rv6c0043qvv46n859bpq83pgng5p"; depends=[gtools Hmisc plotrix]; }; + iCNV = derive2 { name="iCNV"; version="1.1.1"; sha256="0rwr2di8215fxjv0wz75ipwdipyxr043yv72m0c03iwq5rccglxd"; depends=[CODEX data_table dplyr fields ggplot2 rlang tidyr truncnorm]; }; iCOBRA = derive2 { name="iCOBRA"; version="1.9.1"; sha256="08nzcsph0w5zp6l2lwrg2624gsgs939rkv1662ic72jf8759i4s1"; depends=[dplyr DT ggplot2 limma reshape2 ROCR scales shiny shinyBS shinydashboard UpSetR]; }; iCheck = derive2 { name="iCheck"; version="1.11.0"; sha256="0bs9zzcc1pbdvvzq912yqr2waic72jj4pv6ksqjg6s9wz390a4gc"; depends=[affy Biobase GeneSelectMMD gplots limma lmtest lumi MASS preprocessCore randomForest rgl scatterplot3d]; }; - iChip = derive2 { name="iChip"; version="1.35.0"; sha256="0c610x3g5nkpwsrkix66s3z8dc24dv11dfidms757hc0fwchnsq3"; depends=[limma]; }; - iClusterPlus = derive2 { name="iClusterPlus"; version="1.17.0"; sha256="1ax42hac2wqkyawm9dwwzm0lf81cihric78j38v1vjic918l1b14"; depends=[]; }; - iGC = derive2 { name="iGC"; version="1.11.0"; sha256="1bcbf1azdb4svdjz8yaxs55l76g5c8i1h53s66qjhss8i3pjydr3"; depends=[data_table plyr]; }; - iPAC = derive2 { name="iPAC"; version="1.25.0"; sha256="1mdcr7fa2y78cnndsd8y08hrmlzbgbsgmhq0kzpszr79xj49kdzx"; depends=[Biostrings gdata multtest scatterplot3d]; }; - iSEE = derive2 { name="iSEE"; version="1.1.2"; sha256="0x8pmyzpbb1x33ixh1jnpfs58l7b1d12r51gk7gjqxa291phg7zk"; depends=[AnnotationDbi BiocGenerics colourpicker cowplot dplyr DT ggplot2 igraph mgcv rentrez reshape2 rintrojs S4Vectors scales shiny shinyAce shinydashboard shinyjs SingleCellExperiment SummarizedExperiment vipor viridisLite]; }; - iSeq = derive2 { name="iSeq"; version="1.33.0"; sha256="1sxy4hxpds6k1flmspwf9y4j8wkr96142z64scigg9mf3p88h5zz"; depends=[]; }; + iChip = derive2 { name="iChip"; version="1.35.1"; sha256="0yaf4q92fjdw80v3ln596f7088wlp7nmwhdxgnbkj0x4kwa9mr2b"; depends=[limma]; }; + iClusterPlus = derive2 { name="iClusterPlus"; version="1.17.2"; sha256="1da6hn0hysmbsd3mma9aq3qh2bj15hdc83p3lj0725c52xi6f2kx"; depends=[]; }; + iGC = derive2 { name="iGC"; version="1.11.1"; sha256="02j3bfv5r8cjjp2k7d3w9y80gvygslcgawmhvzp70chjr12a5nds"; depends=[data_table plyr]; }; + iPAC = derive2 { name="iPAC"; version="1.25.2"; sha256="15jvpz8qmmlcvarnxidmw2x3hn98ngwf2pxa6a8a0rl8qhgis3wb"; depends=[Biostrings gdata multtest scatterplot3d]; }; + iSEE = derive2 { name="iSEE"; version="1.1.14"; sha256="057shg5ayy1c2xss12jknnfj9riavnd50nv6l39bfbxymmn5gwp1"; depends=[AnnotationDbi BiocGenerics colourpicker cowplot dplyr DT ggplot2 igraph mgcv rentrez reshape2 rintrojs S4Vectors scales shiny shinyAce shinydashboard shinyjs SingleCellExperiment SummarizedExperiment vipor viridisLite]; }; + iSeq = derive2 { name="iSeq"; version="1.33.1"; sha256="1cw7fmzd0v6rdrqqkaxx0g5fz763sfwf4kyafmvw00chs4rzi21n"; depends=[]; }; iasva = derive2 { name="iasva"; version="0.99.3"; sha256="1ax0594b3d2glam0lb4dzqzx8bbfdln0wglr96szjdxa6qi31ghk"; depends=[BiocParallel cluster irlba SummarizedExperiment]; }; ibh = derive2 { name="ibh"; version="1.29.0"; sha256="07954bdkijs41r0h39fhlzpd8d75vhlk8gl4zlbaky93prsmi1hf"; depends=[simpIntLists]; }; icetea = derive2 { name="icetea"; version="0.99.10"; sha256="14yzjsydnv2k8x183l7a94jmxsd27p2ndwzdvkd93d5nkh5iq36l"; depends=[BiocGenerics BiocParallel Biostrings csaw edgeR GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges limma Rsamtools rtracklayer S4Vectors ShortRead SummarizedExperiment TxDb_Dmelanogaster_UCSC_dm6_ensGene VariantAnnotation]; }; - ideal = derive2 { name="ideal"; version="1.5.0"; sha256="1pdj0r0qfjwrwvsb4lrwl3mxd6wb4bwmabd9z413868453qk101p"; depends=[AnnotationDbi BiocParallel d3heatmap DESeq2 dplyr DT GenomicRanges ggplot2 GO_db goseq GOstats gplots IHW IRanges knitr limma pcaExplorer pheatmap plyr rentrez rintrojs rmarkdown S4Vectors shiny shinyAce shinyBS shinydashboard stringr SummarizedExperiment topGO UpSetR]; }; + ideal = derive2 { name="ideal"; version="1.5.6"; sha256="1k2h2nn0s6pmy5m2l3c6nri11am49c4s2js1q6iywbhmlcxk5dh5"; depends=[AnnotationDbi BiocParallel d3heatmap DESeq2 dplyr DT GenomicRanges ggplot2 GO_db goseq GOstats gplots IHW IRanges knitr limma pcaExplorer pheatmap rentrez rintrojs rmarkdown S4Vectors shiny shinyAce shinyBS shinydashboard stringr SummarizedExperiment topGO UpSetR]; }; idiogram = derive2 { name="idiogram"; version="1.57.0"; sha256="0nsldgh780amhdafafrkp1lzriwskm3l89fkn2licxvpw63rlajn"; depends=[annotate Biobase plotrix]; }; - igvR = derive2 { name="igvR"; version="1.1.6"; sha256="12jl0yj6pgjfvrx3rv63nj88zdvakzrh499gx4kz1m5s8wqxswdi"; depends=[BiocGenerics BrowserViz GenomicRanges httpuv rtracklayer VariantAnnotation]; }; - illuminaio = derive2 { name="illuminaio"; version="0.23.0"; sha256="00qf9qjinyqd16r3zv99cgkwxdy44f2i6q2hlhmic7942j6h6r55"; depends=[base64]; }; + igvR = derive2 { name="igvR"; version="1.1.17"; sha256="1hqd65n1qkdf54jqghj9jxcbi6sl918ymarwbrgrfrm6dk1mxzsn"; depends=[BiocGenerics BrowserViz GenomicRanges httpuv rtracklayer VariantAnnotation]; }; + illuminaio = derive2 { name="illuminaio"; version="0.23.2"; sha256="05m18f0ipc89lak30rdlg1b1aafsgjsjzbr6scn18168m12qkd5i"; depends=[base64]; }; imageHTS = derive2 { name="imageHTS"; version="1.31.0"; sha256="0d7l8w5i0nlfks1iak0qdkxrarfx280wyqbpig38bhbmzkv31xrg"; depends=[Biobase cellHTS2 e1071 EBImage hwriter vsn]; }; - immunoClust = derive2 { name="immunoClust"; version="1.13.0"; sha256="0z17f415rqad4hmwhxgl1gh8a1r42v5yz38rpq9yhssq7w1mw8q0"; depends=[flowCore lattice]; }; + immunoClust = derive2 { name="immunoClust"; version="1.13.4"; sha256="04wjiyqp4fcbgyllpqrandvl20cjayymyi35gs3cdg9g2dwci3aq"; depends=[flowCore lattice]; }; impute = derive2 { name="impute"; version="1.55.0"; sha256="1nb2zpnx9ia2br0044jky4kcqj2vw1vw35s34869i35n90n3vqqc"; depends=[]; }; - intansv = derive2 { name="intansv"; version="1.21.0"; sha256="0a2qrnw1jd5d7mqvmin54110xvn1089p16bfi14660qzip6cwb0i"; depends=[BiocGenerics GenomicRanges ggbio IRanges plyr]; }; - interactiveDisplay = derive2 { name="interactiveDisplay"; version="1.19.0"; sha256="1iwv231mc6g2jp6l6b3rs0gm5n1pb7mbah522q3d4s563avs9g0d"; depends=[AnnotationDbi BiocGenerics Category ggplot2 gridSVG interactiveDisplayBase plyr RColorBrewer reshape2 shiny XML]; }; - interactiveDisplayBase = derive2 { name="interactiveDisplayBase"; version="1.19.0"; sha256="0jwsm5i5s6gkxb05n8fmsybyvi5829g6i6y39nxcpd189ihbmv16"; depends=[BiocGenerics shiny]; }; - inveRsion = derive2 { name="inveRsion"; version="1.29.0"; sha256="12pzk7ppd48ccmfr3q2950pfckcc2kfvgnailwai7jxgss1h1148"; depends=[haplo_stats]; }; - isobar = derive2 { name="isobar"; version="1.27.0"; sha256="02aa78jia246w729bg4pl54shjwp51yymskhy842xnznw01nd8p7"; depends=[Biobase biomaRt distr ggplot2 plyr]; }; - isomiRs = derive2 { name="isomiRs"; version="1.9.1"; sha256="1k60zgb2b2yqwzb02nwvri10p1a2qdlgm4g0wg6593fmkr1q9p8h"; depends=[AnnotationDbi assertive_sets Biobase BiocGenerics cluster DESeq2 DiscriMiner dplyr GenomicRanges GGally ggplot2 gplots gridExtra gtools IRanges limma RColorBrewer readr reshape rlang S4Vectors SummarizedExperiment tibble tidyr]; }; - iterClust = derive2 { name="iterClust"; version="1.3.0"; sha256="1bm2ld3w6sm1jn7s0yk9v7d53xmf2ix411p7pp2fyjqfj6vl3iz4"; depends=[Biobase cluster]; }; + intansv = derive2 { name="intansv"; version="1.21.3"; sha256="0aqq5mc63s5gyz82wp37m0y3b7rkv2rxxkfld0jw6dn3fp6dapqp"; depends=[BiocGenerics GenomicRanges ggbio IRanges plyr]; }; + interactiveDisplay = derive2 { name="interactiveDisplay"; version="1.19.3"; sha256="1lmc0x0gfi8jhzl3z8pmkbqmx56xn6fim0ydsrqcaygz25gif6fp"; depends=[AnnotationDbi BiocGenerics Category ggplot2 gridSVG interactiveDisplayBase plyr RColorBrewer reshape2 shiny XML]; }; + interactiveDisplayBase = derive2 { name="interactiveDisplayBase"; version="1.19.2"; sha256="02b3sps2irfb83zii5c0zxzjp2138xfr2jfdhwvh4h6wzqn2a21q"; depends=[BiocGenerics shiny]; }; + inveRsion = derive2 { name="inveRsion"; version="1.29.1"; sha256="0bwr76l30sxzdfjjsf7py4i78diwazfjkf237yx8n4kzb0jlkilp"; depends=[haplo_stats]; }; + ipdDb = derive2 { name="ipdDb"; version="0.99.10"; sha256="1k1giv6jvgy54pa5yqcy0yrmn53x1ggbryg9c7mmpb4dljw7vnrj"; depends=[AnnotationDbi AnnotationHub assertthat Biostrings DBI GenomicRanges IRanges RSQLite]; }; + isobar = derive2 { name="isobar"; version="1.27.1"; sha256="0kznz8h6b8wq1z8xqkhn0k6gmc7wbxdfv3vy19s93njdk7w3gn5d"; depends=[Biobase biomaRt distr ggplot2 plyr]; }; + isomiRs = derive2 { name="isomiRs"; version="1.9.5"; sha256="08xvxpl1x46rs4zh34irypq0bsici3xhh52dzirhr0671p9ihqa6"; depends=[AnnotationDbi assertive_sets Biobase BiocGenerics cluster cowplot DEGreport DESeq2 DiscriMiner dplyr GenomicRanges GGally ggplot2 gplots gridExtra gtools IRanges limma RColorBrewer readr reshape rlang S4Vectors SummarizedExperiment tibble tidyr]; }; + iterClust = derive2 { name="iterClust"; version="1.3.2"; sha256="1gkqnpyhispjbzc30dfs1hdv1vq6r33sqkmjnzcil4mbr529gvc3"; depends=[Biobase cluster]; }; iterativeBMA = derive2 { name="iterativeBMA"; version="1.39.0"; sha256="07xy5vjmgzglab6hp82xkd6gc67lb58n8g26zvssldpzm1kir70j"; depends=[Biobase BMA leaps]; }; iterativeBMAsurv = derive2 { name="iterativeBMAsurv"; version="1.39.0"; sha256="1cj63g97xm05clix5cv3dmjdwb806rb5va262hfhvmd2aa6bgq2k"; depends=[BMA leaps survival]; }; - iteremoval = derive2 { name="iteremoval"; version="1.1.0"; sha256="0ggmvmif5ak35mjzd000dflcbnp0zx14zspn2nabkak74zvdjsgm"; depends=[GenomicRanges ggplot2 magrittr SummarizedExperiment]; }; + iteremoval = derive2 { name="iteremoval"; version="1.1.1"; sha256="09qdb60ndjljn4wgpgnxcy2yvivlpvzgr6vs04ssjwq9dk8vwc9l"; depends=[GenomicRanges ggplot2 magrittr SummarizedExperiment]; }; ivygapSE = derive2 { name="ivygapSE"; version="1.3.0"; sha256="1730rd55ws484q4iwgd06cps8jfg7f1wzryjr0gzaykxq7n2yi94"; depends=[ggplot2 hwriter plotly S4Vectors shiny SummarizedExperiment survival survminer UpSetR]; }; joda = derive2 { name="joda"; version="1.29.0"; sha256="0n76l7mrkqrsvjq67hp9am3b6ixi2v9vz7hppj36y37r02myhdlb"; depends=[bgmm RBGL]; }; - karyoploteR = derive2 { name="karyoploteR"; version="1.7.1"; sha256="1fvvc8181vasbdky42yijhknm57pypb6abkswl9si91fv2zm4z28"; depends=[bezier biovizBase digest GenomeInfoDb GenomicFeatures GenomicRanges IRanges memoise regioneR Rsamtools rtracklayer S4Vectors]; }; - kebabs = derive2 { name="kebabs"; version="1.15.0"; sha256="061cpbsqd444p3jw08kv72b3q2cbrzd1939vgbbsg98l550684bs"; depends=[apcluster Biostrings e1071 IRanges kernlab LiblineaR Matrix Rcpp S4Vectors XVector]; }; + karyoploteR = derive2 { name="karyoploteR"; version="1.7.17"; sha256="1ks87kkw12gr4598rpq262axaszk4kppm5dhs4hjhy0gkwlm4lhh"; depends=[bamsignals bezier biovizBase digest GenomeInfoDb GenomicFeatures GenomicRanges IRanges memoise regioneR Rsamtools rtracklayer S4Vectors]; }; + kebabs = derive2 { name="kebabs"; version="1.15.2"; sha256="1d08ad2cbrd77qlgmf3y6frya8g5kn8x9k7paabch1fxpzx4sj2g"; depends=[apcluster Biostrings e1071 IRanges kernlab LiblineaR Matrix Rcpp S4Vectors XVector]; }; keggorthology = derive2 { name="keggorthology"; version="2.33.0"; sha256="11a1d08pycj99xzhwblgrjwl6idm6l90i0ya1c0q0bwmaiyqqbwp"; depends=[AnnotationDbi DBI graph hgu95av2_db]; }; kimod = derive2 { name="kimod"; version="1.9.0"; sha256="1q2ndbpw13c9a6g5vs29w5zzrw3ac5y5rjnndw660xljfphid6x4"; depends=[Biobase cluster]; }; - kissDE = derive2 { name="kissDE"; version="1.1.0"; sha256="0k5jw601sygbvvqysha243mbhwqv80c6k8dmbj9mdqpkd0bxw6aw"; depends=[aod Biobase DESeq2 DSS ggplot2 glmnet gplots matrixStats R_utils]; }; - kmknn = derive2 { name="kmknn"; version="0.99.13"; sha256="1qdsm0y1saz594s2bijqwfg74yjds1s55mzsw26sw11rvk63x1z6"; depends=[BiocParallel DelayedArray Rcpp]; }; + kissDE = derive2 { name="kissDE"; version="1.1.3"; sha256="0gm63ixcr3gfg64bg253n9vp1gasmdg3xpb4i27gq7njsx7hs6bw"; depends=[aod Biobase DESeq2 doParallel DSS foreach ggplot2 gplots matrixStats]; }; + kmknn = derive2 { name="kmknn"; version="0.99.16"; sha256="14gvgdz4gvpv5bvr3l7rbn356cqvg3nqq7vcavgyd7bqsvk6mmg3"; depends=[BiocParallel DelayedArray Rcpp]; }; lapmix = derive2 { name="lapmix"; version="1.47.0"; sha256="08qj6i6y42ax82j29maf89zs0k03iv6p30v1zlvgixfh1p86ffk4"; depends=[Biobase]; }; ldblock = derive2 { name="ldblock"; version="1.11.1"; sha256="0z53xkh2khlfsnvr0nqsw8k6s375ba2y5a3njbr9qnif3r0846km"; depends=[BiocGenerics erma GenomeInfoDb GenomicFiles GO_db Homo_sapiens Matrix Rsamtools snpStats VariantAnnotation]; }; les = derive2 { name="les"; version="1.31.0"; sha256="11ad0v5j31s8kcg4572ga4znnpx9ry83m994bqbk3h51cb48pzm8"; depends=[boot fdrtool gplots RColorBrewer]; }; + levi = derive2 { name="levi"; version="0.99.13"; sha256="0n1sl3l7xdp346jz5s6xgfmdy0i71k05khkjygkp0yqnlnapd48z"; depends=[colorspace dplyr DT ggplot2 httr igraph knitr RColorBrewer Rcpp reshape2 shiny shinydashboard shinyjs testthat xml2]; }; lfa = derive2 { name="lfa"; version="1.11.0"; sha256="1vww3lfzb3kx2hp1cm48vg1rmnazgklz1qz1y36yydg53lbl8igi"; depends=[corpcor]; }; - limma = derive2 { name="limma"; version="3.37.2"; sha256="1wf9xpp8l43ld7mkinqznd2dxlpw4w9vgd8y8zg9nz7gp5h0b148"; depends=[]; }; + limma = derive2 { name="limma"; version="3.37.10"; sha256="16jdx417iahrvai0p32qaf6cgknb2pc7bjas5ba4brd2p255sn8i"; depends=[]; }; + limmaGUI = derive2 { name="limmaGUI"; version="1.57.1"; sha256="09dykl3gd231j0xi45j23mv0p9vk0xdhyjls1z5026vclnv6037s"; depends=[limma R2HTML tkrplot xtable]; }; lmdme = derive2 { name="lmdme"; version="1.23.0"; sha256="0192ffh3qmqx31d67zxr8sg7qvwd4wmcgzxq44w9sflb947sn8ds"; depends=[limma pls stemHypoxia]; }; - loci2path = derive2 { name="loci2path"; version="1.1.0"; sha256="0lqixyyv6wrmqbfl67yy131421pmyi6hp7hn11lbf3xm8q56smah"; depends=[BiocParallel data_table GenomicRanges pheatmap RColorBrewer S4Vectors wordcloud]; }; - logicFS = derive2 { name="logicFS"; version="1.51.0"; sha256="1bijly35nfy6ix6b0h2salriy143xyc3l591hcngvif504zjd57b"; depends=[LogicReg mcbiopi]; }; + loci2path = derive2 { name="loci2path"; version="1.1.1"; sha256="1mgnx1dji2dc3jd9biv4bs5f8sgpkxzk6mwsfivfbjll9m7hprb7"; depends=[BiocParallel data_table GenomicRanges pheatmap RColorBrewer S4Vectors wordcloud]; }; + logicFS = derive2 { name="logicFS"; version="2.1.18"; sha256="14jdnjlgsgbciahljmp8wb5zn3dbqy2r3pywbn2iqqx628hl0li6"; depends=[LogicReg mcbiopi survival]; }; logitT = derive2 { name="logitT"; version="1.39.0"; sha256="0ynd7h26ask2i15cxikx9igcm9cdmmihg561l1dv3m9zw84s6mvb"; depends=[affy]; }; lol = derive2 { name="lol"; version="1.29.0"; sha256="050i433xkj365q7k5i7gw07z8li29myd3zgavjg14p9lkdcwia0w"; depends=[Matrix penalized]; }; lpNet = derive2 { name="lpNet"; version="2.13.0"; sha256="1k94rsji8p9ri8mvs6xc23dm4fq4pxcd9323c6jllq9bdljxffkp"; depends=[lpSolve nem]; }; @@ -1163,208 +1243,217 @@ in with self; { maPredictDSC = derive2 { name="maPredictDSC"; version="1.19.0"; sha256="1hn35cgd9571b5vz3wv76lhg2hr77kl1s6r6nmpnjph4asqhj7yg"; depends=[affy AnnotationDbi caret class e1071 gcrma hgu133plus2_db limma LungCancerACvsSCCGEO MASS ROC ROCR]; }; maSigPro = derive2 { name="maSigPro"; version="1.53.0"; sha256="0gf80ff0jhag6mj6r888ivla5fccrdg63d7wh1g322ygp5b27h4s"; depends=[Biobase MASS mclust venn]; }; maanova = derive2 { name="maanova"; version="1.51.0"; sha256="0az1jxfmjjpz3aqb5hvxpw912rh188b6gf02jj3q4v294131rqw4"; depends=[Biobase]; }; - macat = derive2 { name="macat"; version="1.55.0"; sha256="1bmalm7v6hxab5vcqqq6s3s2313xq0pifk7yxq20kh7n8m7n64iw"; depends=[annotate Biobase]; }; - made4 = derive2 { name="made4"; version="1.55.0"; sha256="0pywxxcxbi3wihx7v67rcgk7clzwkc0611687rq764xlkwljaxfw"; depends=[ade4 gplots RColorBrewer scatterplot3d]; }; - maftools = derive2 { name="maftools"; version="1.7.05"; sha256="070w04yq3khxl3pnd96cw8kxfv1j7iwwqwpc618pnarr7ii734mz"; depends=[Biostrings changepoint cometExactTest ComplexHeatmap cowplot data_table ggplot2 ggrepel gridExtra mclust NMF RColorBrewer rjson Rsamtools survival VariantAnnotation wordcloud]; }; + macat = derive2 { name="macat"; version="1.55.3"; sha256="0ywngyddagavml8fyr3m2g9aic1bvy49r3mw8kbx1gy4mcqp0q9a"; depends=[annotate Biobase]; }; + made4 = derive2 { name="made4"; version="1.55.2"; sha256="16r6dsg0ayj26xmblzlwmp93jhw8j1b7cv2z372id2cy1girfdxs"; depends=[ade4 gplots RColorBrewer scatterplot3d]; }; + maftools = derive2 { name="maftools"; version="1.7.51"; sha256="1gvnbcyipjl13yj6yix693d6wibkamwqnmh2zds31hlbj0m2f09a"; depends=[Biostrings BSgenome cometExactTest ComplexHeatmap cowplot data_table ggplot2 ggrepel gridExtra mclust NMF RColorBrewer rjson survival wordcloud]; }; maigesPack = derive2 { name="maigesPack"; version="1.45.0"; sha256="04ihpaqpkimf5k2j8hf2zwjqm6s75nkr1bn8gsvg21m88gajsh3x"; depends=[convert graph limma marray]; }; makecdfenv = derive2 { name="makecdfenv"; version="1.57.0"; sha256="1v9a3r9gxijglxyhjb52jqm6p9vqkn549cim9zbw6mhngn2cqnzs"; depends=[affy affyio Biobase zlibbioc]; }; - manta = derive2 { name="manta"; version="1.27.0"; sha256="0p3r0l0sgnf9rrih35a3n7c6l9a3q9xpd2hilmf3pbrrc5hrxnhm"; depends=[caroline edgeR Hmisc]; }; - mapscape = derive2 { name="mapscape"; version="1.5.0"; sha256="0fs1cn7aw2awgjqmjjb70p5pz6fdnwfvix57wijvalc5qy777h1a"; depends=[base64enc htmlwidgets jsonlite stringr]; }; + manta = derive2 { name="manta"; version="1.27.2"; sha256="15hqw96xpprmq38f0gq50ik6ynqk6k51fp3gxcsy1qbpk9kp89jx"; depends=[caroline edgeR Hmisc]; }; + mapscape = derive2 { name="mapscape"; version="1.5.1"; sha256="1aqxpwz9a87y5kfxnz98axzc7q7d59qkw61jnj5sq9qv2s565q5v"; depends=[base64enc htmlwidgets jsonlite stringr]; }; marray = derive2 { name="marray"; version="1.59.0"; sha256="01kgc79bhg5yg1zkglkpm85zrhm3dl5j63hvxbll3xsrrmy4bhs9"; depends=[limma]; }; martini = derive2 { name="martini"; version="1.1.0"; sha256="1aj39flz18cnl9042hqlnqzyq6ff9j4dl5b2fm29y150s0j2wz5p"; depends=[igraph Matrix Rcpp RcppEigen Rgin S4Vectors snpStats]; }; - maser = derive2 { name="maser"; version="0.99.15"; sha256="12i7yzv4id25186ny5j4bzjlg6jwrk0mwisnpaakvk9fwja4ygl5"; depends=[BiocGenerics data_table dplyr DT GenomeInfoDb GenomicRanges ggplot2 Gviz IRanges reshape2 rtracklayer]; }; + maser = derive2 { name="maser"; version="0.99.16"; sha256="12dchpcxjj3bc4qz0viqxg20c1yv42830l8jc38k3nx90iafs93g"; depends=[BiocGenerics data_table dplyr DT GenomeInfoDb GenomicRanges ggplot2 Gviz IRanges reshape2 rtracklayer]; }; maskBAD = derive2 { name="maskBAD"; version="1.25.0"; sha256="09g28yd1jwxrvqh59lbcnni8ba1kk0gkgcxb2x7s9m35nx8sdr04"; depends=[affy gcrma]; }; massiR = derive2 { name="massiR"; version="1.17.0"; sha256="0gf0j965ssrawvyx4i3mq5xrwbjy73vplig3d5518425l38g3ajp"; depends=[Biobase cluster diptest gplots]; }; - matchBox = derive2 { name="matchBox"; version="1.23.0"; sha256="0gkn4jx9fhpgdrbcqvq6yjy3yyh1fsxw7gq9izcy2mkyp9z2343i"; depends=[]; }; - matter = derive2 { name="matter"; version="1.7.1"; sha256="0vjabjvh3gcxlvjbyncvj6jngwg701h9kr9w334rz1f4l9szkvrl"; depends=[biglm BiocGenerics digest irlba]; }; + matchBox = derive2 { name="matchBox"; version="1.23.1"; sha256="134bv5pplxb2vg75wwb6x7b0mi5qscidrz9xpnf3wfk446mvpzyd"; depends=[]; }; + matter = derive2 { name="matter"; version="1.7.6"; sha256="029qb75k8ps0d979wrvv99666dn6513mhk26x7s0ahj5b75iyymk"; depends=[biglm BiocGenerics digest irlba]; }; mcaGUI = derive2 { name="mcaGUI"; version="1.29.1"; sha256="0klxp5g2s7c6k93imdkc9dxvzzvb89d5jf7x7p7v0mmsm6rbhg95"; depends=[bpca foreign gWidgets gWidgetsRGtk2 lattice MASS OTUbase proto vegan]; }; mdgsa = derive2 { name="mdgsa"; version="1.13.1"; sha256="06p6dfffc7h80wzsypq1xk80q1ilzqpjxrwmvi70sdqv9fc9ac17"; depends=[AnnotationDbi cluster DBI GO_db KEGG_db Matrix]; }; mdp = derive2 { name="mdp"; version="1.1.0"; sha256="0a5r860nywkd35h16vsgqqj0iin0ldbra0b8cs1ql2bwmdjccl7i"; depends=[ggplot2]; }; mdqc = derive2 { name="mdqc"; version="1.43.0"; sha256="1h0pk6amx5vj9zxxwa3aydhnph0cn2qcibz7xk5whpr3fqrzk1b4"; depends=[cluster MASS]; }; - meshes = derive2 { name="meshes"; version="1.7.1"; sha256="1ccbl1gnsapb5r60d2bdfgrj2fmn1glk5yxjxjlv68r9xkv0nfk8"; depends=[AnnotationDbi DOSE enrichplot GOSemSim MeSH_db rvcheck]; }; - meshr = derive2 { name="meshr"; version="1.17.0"; sha256="03q7ihrg2a61kw3nkb13jn2fj3mv0p9g6pas5dm62z5i0yfgqypz"; depends=[BiocGenerics Category cummeRbund fdrtool MeSH_Aca_eg_db MeSH_AOR_db MeSH_Bsu_168_eg_db MeSH_db MeSH_Hsa_eg_db MeSH_PCR_db MeSH_Syn_eg_db MeSHDbi org_Hs_eg_db S4Vectors]; }; + meshes = derive2 { name="meshes"; version="1.7.2"; sha256="03zhlaz7z6z6z9k4c0apqa871g1z5597szk7zq9vsdp210bbws7y"; depends=[AnnotationDbi DOSE enrichplot GOSemSim MeSH_db rvcheck]; }; + meshr = derive2 { name="meshr"; version="1.17.2"; sha256="07y38icgvdncfqw4n4dmigwgl4dwwxmxypwi2rzd586m1wb3diy6"; depends=[BiocGenerics Category cummeRbund fdrtool MeSH_Aca_eg_db MeSH_AOR_db MeSH_Bsu_168_eg_db MeSH_db MeSH_Hsa_eg_db MeSH_PCR_db MeSH_Syn_eg_db MeSHDbi org_Hs_eg_db RSQLite S4Vectors]; }; messina = derive2 { name="messina"; version="1.17.0"; sha256="0zllyp3azgv0yyx0hdcad1bv41shqvkyw143nb7nc79x34zgm11m"; depends=[foreach ggplot2 plyr Rcpp survival]; }; metaArray = derive2 { name="metaArray"; version="1.59.0"; sha256="0xp7qnvgj9qa83lwv6dcbs3fw41jyp1lsw17n87jr9x2gnz9v2ly"; depends=[Biobase MergeMaid]; }; metaCCA = derive2 { name="metaCCA"; version="1.9.0"; sha256="1i8qgq7qxngkrgibwqh8c6yigpi5w7bf1jivpmkk1swzlsa620y8"; depends=[]; }; metaMS = derive2 { name="metaMS"; version="1.17.0"; sha256="194pw7fbf9nr0wxq7fbg4j45lh36va6ypr62aj8zc6l2hh42d2b5"; depends=[BiocGenerics CAMERA Matrix robustbase xcms]; }; metaSeq = derive2 { name="metaSeq"; version="1.21.0"; sha256="0fcwfk0vz0pa5pykxlf4g8zg5iyd40qncq40kh8zydymkkz7njqg"; depends=[NOISeq Rcpp snow]; }; metabomxtr = derive2 { name="metabomxtr"; version="1.15.0"; sha256="09mx5a26maf4zm670r17xs9bfyn7xz6hhyjh9bbbkm4lf0fyph22"; depends=[Biobase BiocParallel Formula ggplot2 multtest optimx plyr]; }; - metagene = derive2 { name="metagene"; version="2.13.1"; sha256="0lyv5mm5bvvj2v3519swvwwsgmma952ccy8rxnpzr628lrvllcw9"; depends=[BiocParallel data_table DBChIP EnsDb_Hsapiens_v86 ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gplots IRanges magrittr matrixStats muStat purrr R6 Rsamtools rtracklayer stringr]; }; + metagene = derive2 { name="metagene"; version="2.13.3"; sha256="19g9nh13b8wr4kbpr57vhnm2237zzx2iv4pvsvabsswr9ls09pfl"; depends=[BiocParallel data_table DBChIP EnsDb_Hsapiens_v86 ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gplots IRanges magrittr matrixStats muStat purrr R6 Rsamtools rtracklayer stringr]; }; metagenomeFeatures = derive2 { name="metagenomeFeatures"; version="2.1.0"; sha256="1dbw7cvyrh4w8cjqdvslph3lbrxxyxnpc71l69myasf4w1hwwsjb"; depends=[ape Biobase Biostrings dbplyr DECIPHER dplyr lattice lazyeval magrittr purrr RSQLite S4Vectors stringr]; }; - metagenomeSeq = derive2 { name="metagenomeSeq"; version="1.23.0"; sha256="09bfw6g9k4mimnlcrqf5690gpwn5f02pcairnnrmkx5kx7smj4zw"; depends=[Biobase foreach glmnet gplots limma Matrix matrixStats RColorBrewer]; }; + metagenomeSeq = derive2 { name="metagenomeSeq"; version="1.23.1"; sha256="141hm3dbbcpjy743gwcn0ajvkb6af4g4cxqq7lads1zxhfpl6fq4"; depends=[Biobase foreach glmnet gplots limma Matrix matrixStats RColorBrewer]; }; metahdep = derive2 { name="metahdep"; version="1.39.0"; sha256="1zm6j0i9myn4q4lwc2almy6d6khg1kqb8ij11cr5dhxmwx444ma8"; depends=[]; }; - metaseqR = derive2 { name="metaseqR"; version="1.21.0"; sha256="1ny7srzlw1gv0bf4zflji0k48s6mw6cl2141y5l6wxwyiljgxvdp"; depends=[baySeq biomaRt brew corrplot DESeq EDASeq edgeR gplots limma log4r NBPSeq NOISeq qvalue rjson vsn]; }; + metaseqR = derive2 { name="metaseqR"; version="1.21.2"; sha256="1vyjn9v0z3wx69ncqp2gzswwz6b47aarqf3dk1hpzwhrr30sqli8"; depends=[baySeq biomaRt brew corrplot DESeq EDASeq edgeR gplots limma log4r NBPSeq NOISeq qvalue rjson vsn]; }; metavizr = derive2 { name="metavizr"; version="1.5.1"; sha256="1wvdzqvjlr2ygxkq2pvkfw5xdr09yafmalf4k5ya7mc70cg6w7nb"; depends=[Biobase data_table digest epivizr epivizrData epivizrServer epivizrStandalone GenomeInfoDb httr metagenomeSeq phyloseq vegan]; }; - methInheritSim = derive2 { name="methInheritSim"; version="1.3.0"; sha256="180lha5avnrlnkc709hy5akmajwpkzb2slk7gf7641349lx3890v"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges methylKit msm S4Vectors]; }; + methInheritSim = derive2 { name="methInheritSim"; version="1.3.1"; sha256="0grqjwv75yd0v3ji99cwnbbgp6s488kyh5d3kan1x88wqy6p00cw"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges methylKit msm S4Vectors]; }; methVisual = derive2 { name="methVisual"; version="1.33.0"; sha256="0pyj09zkan51w6w0wnkg3ww49hlwqarl5sfw7wrbarfdvxvlyqpa"; depends=[Biostrings ca gridBase gsubfn IRanges plotrix sqldf]; }; - methimpute = derive2 { name="methimpute"; version="1.3.1"; sha256="09v7dw2sdkzrypw9brqyym9ipmplww2r3jh5fybw66zj2fiqxhx6"; depends=[Biostrings data_table GenomeInfoDb GenomicRanges ggplot2 IRanges minpack_lm Rcpp reshape2]; }; + methimpute = derive2 { name="methimpute"; version="1.3.2"; sha256="1nd5ay6ymf0hchv1q62qpj3by4h7c83x59b8d72w1hrv5xcgqhi6"; depends=[Biostrings data_table GenomeInfoDb GenomicRanges ggplot2 IRanges minpack_lm Rcpp reshape2]; }; methyAnalysis = derive2 { name="methyAnalysis"; version="1.23.0"; sha256="1fhhk2yqcq2rh30369izn32w7jzcyzhlwaa5wcds4mb2caiyr4kj"; depends=[annotate AnnotationDbi Biobase BiocGenerics biomaRt genefilter GenomeInfoDb GenomicFeatures GenomicRanges genoset Gviz IRanges lumi methylumi org_Hs_eg_db rtracklayer SummarizedExperiment VariantAnnotation]; }; - methylInheritance = derive2 { name="methylInheritance"; version="1.5.0"; sha256="1bf765bvv63xp3fxxf9rx0x5z8x4sk1xfwm67nm10shsd4wbh0za"; depends=[BiocParallel GenomicRanges ggplot2 gridExtra IRanges methylKit rebus S4Vectors]; }; - methylKit = derive2 { name="methylKit"; version="1.7.4"; sha256="1mi3w3b60k1nnrp7g2dv4b561y9ws493n5v0s8gwz4w7m12xb2qx"; depends=[data_table emdbook fastseg GenomeInfoDb GenomicRanges gtools IRanges KernSmooth limma mclust qvalue R_utils Rcpp Rhtslib Rsamtools rtracklayer S4Vectors zlibbioc]; }; - methylMnM = derive2 { name="methylMnM"; version="1.19.0"; sha256="1rzx8sd1kg4krzjqbnv0fi89lgc12xjdzlkbc8dpj8mx8d6gp8xg"; depends=[edgeR statmod]; }; + methylGSA = derive2 { name="methylGSA"; version="0.99.16"; sha256="1jxwys6dlhqs8fq9f8vw63d5llzcbvyyczw2qgi94qwispb5s5bi"; depends=[AnnotationDbi clusterProfiler ggplot2 GO_db IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b2_hg19 missMethyl org_Hs_eg_db reactome_db RobustRankAggreg stringr]; }; + methylInheritance = derive2 { name="methylInheritance"; version="1.5.2"; sha256="0vvwzxabm5xz94zfvi1yjw43d8asmv7wmcngjx571qphcl1hlyab"; depends=[BiocParallel GenomicRanges ggplot2 gridExtra IRanges methylKit rebus S4Vectors]; }; + methylKit = derive2 { name="methylKit"; version="1.7.10"; sha256="1m8cb5w8rhcnsdh01ahcr16hnjpvzb77albxlbqcprhndvd7cxgh"; depends=[data_table emdbook fastseg GenomeInfoDb GenomicRanges gtools IRanges KernSmooth limma mclust qvalue R_utils Rcpp Rhtslib Rsamtools rtracklayer S4Vectors zlibbioc]; }; + methylMnM = derive2 { name="methylMnM"; version="1.19.1"; sha256="1h0ydwljbrdyb5vn688303zp61np5a0zaah974g6v8mgs4izdqvk"; depends=[edgeR statmod]; }; methylPipe = derive2 { name="methylPipe"; version="1.15.0"; sha256="0v00cc5jiw0n6nxq5nvbmaknbanp0gbzk8d3p5igfj3pva6zvpjy"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicRanges gplots Gviz IRanges marray Rsamtools S4Vectors SummarizedExperiment]; }; methylumi = derive2 { name="methylumi"; version="2.27.0"; sha256="1carjnp9fbldzyms0cnc5lv92y4cxgzri9wxd5m4svrdfagnj75z"; depends=[annotate AnnotationDbi Biobase BiocGenerics FDb_InfiniumMethylation_hg19 genefilter GenomeInfoDb GenomicRanges ggplot2 illuminaio IRanges lattice matrixStats minfi reshape2 S4Vectors scales SummarizedExperiment]; }; - methyvim = derive2 { name="methyvim"; version="1.3.0"; sha256="1w8jm4qba2cqi1ghrk0lmwhmdh6hn9fdbzh8f3gf7hlbbg5wf678"; depends=[BiocGenerics BiocParallel bumphunter cluster doFuture dplyr future GenomeInfoDb ggplot2 ggsci gridExtra gtools IRanges limma minfi SummarizedExperiment superheat tmle]; }; - mfa = derive2 { name="mfa"; version="1.3.0"; sha256="14qb1l4czylj2jid2fqk24pqkg2rgv4fs2d719xmd8yd9snhda7r"; depends=[Biobase coda dplyr ggmcmc ggplot2 magrittr MCMCglmm MCMCpack Rcpp tibble]; }; + methyvim = derive2 { name="methyvim"; version="1.3.1"; sha256="1jycwzqf7147pcdfais5n876x9w61xsr41jq2kgqhnmxz05rhwkb"; depends=[BiocGenerics BiocParallel bumphunter cluster doFuture dplyr future GenomeInfoDb ggplot2 ggsci gridExtra gtools IRanges limma minfi S4Vectors SummarizedExperiment superheat tmle]; }; + mfa = derive2 { name="mfa"; version="1.3.1"; sha256="1nn35lxbq6dqsgc21pkbl7x803v385n360wnjv1qxjs9b8w8xqjk"; depends=[Biobase coda dplyr ggmcmc ggplot2 magrittr MCMCglmm MCMCpack Rcpp tibble]; }; mgsa = derive2 { name="mgsa"; version="1.29.0"; sha256="1vhp23qx5vzaqmn06vngfd9c3y5ygizc6hhx1ccv7m5x4lz2a4jg"; depends=[gplots]; }; - miRBaseConverter = derive2 { name="miRBaseConverter"; version="1.5.0"; sha256="0gj23y3sk269j0zci53f9b3mdqvdnk84awg80zxv5s25wjzsvwwf"; depends=[]; }; - miRLAB = derive2 { name="miRLAB"; version="1.11.0"; sha256="12xyplcm923lhwpjxwy8a9xfn6mrhpcf264kyckzswmxzvnqy3n8"; depends=[energy entropy glmnet gplots Hmisc httr impute limma pcalg RCurl Roleswitch stringr]; }; + miRBaseConverter = derive2 { name="miRBaseConverter"; version="1.5.6"; sha256="0r6cgvslm1lsg1mhrxzdghglk55zh7f3n1lhk136hk5nqh58nhk9"; depends=[]; }; + miRLAB = derive2 { name="miRLAB"; version="1.11.1"; sha256="18bqx7gxx3hs9mfvgidnngf57grlxnapq8axp2cyhvbvspwaabb6"; depends=[Category ctc dplyr energy entropy glmnet GOstats gplots heatmap_plus Hmisc httr impute InvariantCausalPrediction limma org_Hs_eg_db pcalg RCurl Roleswitch stringr SummarizedExperiment TCGAbiolinks]; }; miRNAmeConverter = derive2 { name="miRNAmeConverter"; version="1.9.0"; sha256="116zkdwspzb0rp6yhz9bjfarbi2mvvlngsb53zs1js59kzsrw06a"; depends=[AnnotationDbi DBI miRBaseVersions_db reshape2]; }; miRNApath = derive2 { name="miRNApath"; version="1.41.0"; sha256="1hndq9aq3r3mci5j9ysfkb8kdw2zp7bbi3j7qfcdchm9q3g78rya"; depends=[]; }; - miRNAtap = derive2 { name="miRNAtap"; version="1.15.0"; sha256="03i5bbjygkas379kp6frf68d4f7md3safbkayqiccdaq1vszah08"; depends=[AnnotationDbi DBI plyr RSQLite sqldf stringr]; }; - miRcomp = derive2 { name="miRcomp"; version="1.11.0"; sha256="08b4na83sdp3q6hcadbyc59jmd151vwg26prjvxvsmacqajlf2xc"; depends=[Biobase KernSmooth miRcompData]; }; + miRNAtap = derive2 { name="miRNAtap"; version="1.15.1"; sha256="030kl4i7m1apxb4r3r3p2fbq2429zcm2aja96vdr6x2vmrna3nr5"; depends=[AnnotationDbi DBI plyr RSQLite sqldf stringr]; }; + miRSM = derive2 { name="miRSM"; version="0.99.28"; sha256="04liw858ihv2ljg4w14gj0mrkfrsycnfg0k0pp041pz158d4wn78"; depends=[BiBitR BicARE biclust Biobase dynamicTreeCut fabia flashClust GFA GSEABase iBBiG igraph isa2 linkcomm MCL miRsponge NMF PMA Rcpp rqubic runibic s4vd SummarizedExperiment WGCNA]; }; + miRcomp = derive2 { name="miRcomp"; version="1.11.1"; sha256="1am0pxrdp297z12wbg1nlf7lbc37d9v01nb6hp4zw5gdkf3rfagd"; depends=[Biobase KernSmooth miRcompData]; }; miRmine = derive2 { name="miRmine"; version="1.3.0"; sha256="10j2f6ldxxf78aps1ygvdzpvga5smb4xv9m4mhgbhl9qfbkqvkd1"; depends=[SummarizedExperiment]; }; - miRsponge = derive2 { name="miRsponge"; version="1.7.0"; sha256="1w61pnjzp6g7p6sz6y88h6zdifmqdijr89y25rqrgk6ybz50206j"; depends=[clusterProfiler corpcor DOSE igraph linkcomm ProNet ReactomePA survival varhandle]; }; + miRsponge = derive2 { name="miRsponge"; version="1.7.6"; sha256="1isl9mi8bqwxxsm1miv7bh0xahsg3lb22q0lyj35ij0bhkdr1sw7"; depends=[clusterProfiler corpcor DOSE igraph linkcomm MCL Rcpp ReactomePA survival varhandle]; }; microRNA = derive2 { name="microRNA"; version="1.39.0"; sha256="0c1dvhp81kxv1kxr77rl7wgq5wr92gj37m8qsgn0b40zs5b1b49i"; depends=[Biostrings]; }; - microbiome = derive2 { name="microbiome"; version="1.3.1"; sha256="0vwx4m4w26lrs5n30ikc5h38bcbpi5ynfiqm8kbnqmldzsfcq56q"; depends=[dplyr ggplot2 phyloseq reshape2 tidyr vegan]; }; - mimager = derive2 { name="mimager"; version="1.5.0"; sha256="1jl3j7l75g04a7w2cf7kgci78b2q68wadpbq8hcg91qrr1jahw89"; depends=[affy affyPLM Biobase BiocGenerics DBI gtable oligo oligoClasses preprocessCore S4Vectors scales]; }; + microbiome = derive2 { name="microbiome"; version="1.3.3"; sha256="17gnyy8qwxjg86i8nx4mpyhrsy8mkmzyhgmxfngkvlyb3cqqvbdl"; depends=[dplyr ggplot2 phyloseq reshape2 tidyr vegan]; }; + mimager = derive2 { name="mimager"; version="1.5.3"; sha256="1zpp71qjws6qm1cdl7s057mgijbsqhahklaq0flc4izvjn7awkrs"; depends=[affy affyPLM Biobase BiocGenerics DBI gtable oligo oligoClasses preprocessCore S4Vectors scales]; }; minet = derive2 { name="minet"; version="3.39.0"; sha256="0lbga3id91swx8vnfcw4vgwq5bypr3a110il3a84kwr9naq9vnvi"; depends=[infotheo]; }; - minfi = derive2 { name="minfi"; version="1.27.5"; sha256="107y7npvk5cdr7nz6ll8whyhc83ni1wl3vsx28wyblh7qwk3fh64"; depends=[beanplot Biobase BiocGenerics BiocParallel Biostrings bumphunter data_table DelayedArray DelayedMatrixStats genefilter GenomeInfoDb GenomicRanges GEOquery HDF5Array illuminaio IRanges lattice limma MASS mclust nlme nor1mix preprocessCore quadprog RColorBrewer reshape S4Vectors siggenes SummarizedExperiment]; }; + minfi = derive2 { name="minfi"; version="1.27.8"; sha256="0vizm0alsczrjqryzhl7za6n3gc6dmr3z6h2dihn31fc74z0lqyn"; depends=[beanplot Biobase BiocGenerics BiocParallel Biostrings bumphunter data_table DelayedArray DelayedMatrixStats genefilter GenomeInfoDb GenomicRanges GEOquery HDF5Array illuminaio IRanges lattice limma MASS mclust nlme nor1mix preprocessCore quadprog RColorBrewer reshape S4Vectors siggenes SummarizedExperiment]; }; mirIntegrator = derive2 { name="mirIntegrator"; version="1.11.0"; sha256="1f6xi68rgc5xgmcpv25lfz9khdwh94k59a2r2lj81y7h1fg3asck"; depends=[AnnotationDbi ggplot2 graph org_Hs_eg_db Rgraphviz ROntoTools]; }; - missMethyl = derive2 { name="missMethyl"; version="1.15.0"; sha256="027avacdx9h4b2gj7sv0a1a38iaby0x882zbn25zh4fabgjclffv"; depends=[AnnotationDbi BiasedUrn GO_db IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest limma methylumi minfi org_Hs_eg_db ruv statmod stringr]; }; - missRows = derive2 { name="missRows"; version="1.1.0"; sha256="10wj9g5xy3y7zk3n0nnkvppj66zl226bd5cjbkgwicz8kb29n4ld"; depends=[ggplot2 gtools MultiAssayExperiment plyr S4Vectors]; }; + missMethyl = derive2 { name="missMethyl"; version="1.15.5"; sha256="0p2mgq5njh830vhi2najh3slzhqz56fzi947xvrbyz5crqn8aq02"; depends=[AnnotationDbi BiasedUrn GO_db IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b4_hg19 IlluminaHumanMethylationEPICmanifest limma methylumi minfi org_Hs_eg_db ruv statmod stringr]; }; + missRows = derive2 { name="missRows"; version="1.1.1"; sha256="09s34cd47hylqwi4qmcnba4qmwiz0n1n3z0m7pabqmw7ysn20mi8"; depends=[ggplot2 gtools MultiAssayExperiment plyr S4Vectors]; }; mitoODE = derive2 { name="mitoODE"; version="1.19.0"; sha256="1qkhf4y5cnwxv39lacdph3r030d9d4jc76lzgg9gl7gyk9801rhh"; depends=[KernSmooth MASS minpack_lm mitoODEdata]; }; - mlm4omics = derive2 { name="mlm4omics"; version="0.99.20"; sha256="1h6s1ddj73wy1v79vpvjsf5hkjyxf3fha5w2n2cqr89ix4k76l3l"; depends=[BH ggplot2 MASS Matrix Rcpp RcppEigen rstan rstantools StanHeaders]; }; + mixOmics = derive2 { name="mixOmics"; version="6.4.6"; sha256="1id5zcqqdzh72k41sc267fi7cbqyzlfwb8758xnxibgp9a3mjqci"; depends=[corpcor dplyr ellipse ggplot2 gridExtra igraph lattice MASS matrixStats rARPACK RColorBrewer reshape2 tidyr]; }; + mlm4omics = derive2 { name="mlm4omics"; version="0.99.22"; sha256="0yrz6cg6w8nsv5lkpzs43jla0wgmvb4bv66q5wb5f3p38fvym4c1"; depends=[BH ggplot2 MASS Matrix Rcpp RcppEigen rstan rstantools StanHeaders]; }; mogsa = derive2 { name="mogsa"; version="1.15.0"; sha256="02a9p3awa8lix75ghw8x0nm9dzccg57ydyg1hr5kxx3bq51lvj3v"; depends=[Biobase BiocGenerics cluster corpcor genefilter gplots graphite GSEABase svd]; }; monocle = derive2 { name="monocle"; version="2.9.0"; sha256="15m4221g6m5r8w3af9qk8jxqnqjjj31xvfcxi2n7dhfvqw4f35a1"; depends=[Biobase BiocGenerics biocViews cluster combinat DDRTree densityClust dplyr fastICA ggplot2 HSMMSingleCell igraph irlba limma MASS Matrix matrixStats pheatmap plyr proxy qlcMatrix RANN Rcpp reshape2 Rtsne slam stringr tibble VGAM viridis]; }; mosaics = derive2 { name="mosaics"; version="2.19.0"; sha256="1d5b7rhxzzzlyapfq4fmml8k41fpha2bw398jzq6xsk52wfjjbiv"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges lattice MASS Rcpp Rsamtools S4Vectors]; }; motifRG = derive2 { name="motifRG"; version="1.25.0"; sha256="0ramq5yk9ri04waj16vgcvr8jgd93afn2q8yr4avzaq9a1klsh7a"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 IRanges seqLogo XVector]; }; - motifStack = derive2 { name="motifStack"; version="1.25.0"; sha256="0ry64xf3gsiapickxzhbh9sn4yhwnvg9vqxv6wrj565wl284zd1h"; depends=[ade4 Biostrings grImport htmlwidgets MotIV scales XML]; }; - motifbreakR = derive2 { name="motifbreakR"; version="1.11.0"; sha256="1kaadjkcvdm1i8cpnz4qfyiwiffd0h61wx8mwa4x1xqyiwj5s04y"; depends=[BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges grImport Gviz IRanges matrixStats MotifDb motifStack rtracklayer S4Vectors stringr TFMPvalue VariantAnnotation]; }; - motifcounter = derive2 { name="motifcounter"; version="1.5.2"; sha256="0cs9cp09r6k63ap131ir13hcswipwshdzy2gg562v8yrnysvv96p"; depends=[Biostrings]; }; + motifStack = derive2 { name="motifStack"; version="1.25.3"; sha256="1qvillm4aflyws82gi6sk6wd8f0zpnm0srgv420l0plmiv9v8gaj"; depends=[ade4 Biostrings grImport htmlwidgets MotIV scales XML]; }; + motifbreakR = derive2 { name="motifbreakR"; version="1.11.1"; sha256="1mpwxh7yigxplm3pczmqczqbs9nbfz1f5jpl4j5wkgcxh634s42l"; depends=[BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges grImport Gviz IRanges matrixStats MotifDb motifStack rtracklayer S4Vectors stringr TFMPvalue VariantAnnotation]; }; + motifcounter = derive2 { name="motifcounter"; version="1.5.5"; sha256="1zf3sgl3d8wazbd673bmns3fx5r3ppbzlgrms3z2svzh9997z4gc"; depends=[Biostrings]; }; motifmatchr = derive2 { name="motifmatchr"; version="1.3.0"; sha256="0p1v2nbxw889ck8jsvw0qkxqxnpzqvha2k64r9f8xg2d06pfr7ya"; depends=[Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Matrix Rcpp RcppArmadillo Rsamtools S4Vectors SummarizedExperiment TFBSTools]; }; mpra = derive2 { name="mpra"; version="1.3.0"; sha256="1bh73npgphq2xanx9sc9yz0dpcilcvwnwz030fpy2mvaipnrqpjc"; depends=[BiocGenerics limma S4Vectors scales statmod SummarizedExperiment]; }; - msPurity = derive2 { name="msPurity"; version="1.7.1"; sha256="0jf1r0p2v20g87lirzi956vkrzm25px9q47pbjfw3k2hf4k97pwp"; depends=[DBI doSNOW fastcluster foreach ggplot2 mzR plyr Rcpp reshape2 RSQLite stringr]; }; - msa = derive2 { name="msa"; version="1.13.0"; sha256="0z2haqbz22q1zxmks570vky1a1i101pscq2ryi50aj78g4k87ad1"; depends=[BiocGenerics Biostrings IRanges Rcpp S4Vectors]; }; + msPurity = derive2 { name="msPurity"; version="1.7.2"; sha256="018gawlqn1syhhqmg9dbdzxg2knrp4vwqpbbazdayxk8adsr4ak2"; depends=[DBI doSNOW fastcluster foreach ggplot2 mzR plyr Rcpp reshape2 RSQLite stringr]; }; + msa = derive2 { name="msa"; version="1.13.1"; sha256="0fcs489fmx6vhdmqmksqwlakg1a9cn44s9mbdcjqkx15lhcqaa9r"; depends=[BiocGenerics Biostrings IRanges Rcpp S4Vectors]; }; msgbsR = derive2 { name="msgbsR"; version="1.5.0"; sha256="1hlpg3zd4w514f1p0c36jsgg0dlirmnw1fq5l734yabgbf6zkv3l"; depends=[BSgenome easyRNASeq edgeR GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 IRanges plyr R_utils Rsamtools S4Vectors SummarizedExperiment]; }; msmsEDA = derive2 { name="msmsEDA"; version="1.19.0"; sha256="0xni6k9ij49zzxlhnbhn6v0nij49m26cxyv6xdlwfp0jh37390gk"; depends=[gplots MASS MSnbase RColorBrewer]; }; msmsTests = derive2 { name="msmsTests"; version="1.19.0"; sha256="1kz9s9dc4rxz77k743ql6j84h2hv8fkbwl7707gqfs5789gj7w41"; depends=[edgeR msmsEDA MSnbase qvalue]; }; - multiClust = derive2 { name="multiClust"; version="1.11.3"; sha256="0gjn9pl685pkl2yv6dbkdqr9hc3pcl39fk2h3nrd1irl7gf7isrw"; depends=[amap cluster ctc dendextend mclust survival]; }; - multiMiR = derive2 { name="multiMiR"; version="1.3.0"; sha256="1zhpsipbcm1hqcc75nf0xjfm6v4nqc8bgp9pgj1v5q4ni8vffzsf"; depends=[AnnotationDbi BiocGenerics dplyr purrr RCurl tibble XML]; }; - multiOmicsViz = derive2 { name="multiOmicsViz"; version="1.5.0"; sha256="1z750jwpvcl679ikzlcyy0yrifx13abxy8wigsxwrbc4wcljqyqw"; depends=[doParallel foreach SummarizedExperiment]; }; + multiClust = derive2 { name="multiClust"; version="1.11.6"; sha256="1g5zxy0x3fipmdiw3dkwzjnrni9r7rcqc71jilq0jfr8z52h5kik"; depends=[amap cluster ctc dendextend mclust survival]; }; + multiHiCcompare = derive2 { name="multiHiCcompare"; version="0.99.46"; sha256="0f2h2xdprarri4x19jvac9irm7gba2x1dhaab1r6pl6hkkmasi01"; depends=[BiocParallel BLMA data_table dplyr edgeR GenomeInfoDb GenomeInfoDbData GenomicRanges HiCcompare metap pbapply pheatmap qqman]; }; + multiMiR = derive2 { name="multiMiR"; version="1.3.2"; sha256="19my81w8q1zva7p1k7wbjr69x3bmqwwkz2phmfmb6gaa2361gn6l"; depends=[AnnotationDbi BiocGenerics dplyr purrr RCurl tibble XML]; }; + multiOmicsViz = derive2 { name="multiOmicsViz"; version="1.5.1"; sha256="0zjp90z00dmd6k96ffmb1iljzf22asij7m90lj764z2xskii9nz0"; depends=[doParallel foreach SummarizedExperiment]; }; multiscan = derive2 { name="multiscan"; version="1.41.0"; sha256="08s4rpikrjzhip9zpb5dc0fi98hj304qlcvxm1agi881awlvpkig"; depends=[Biobase]; }; multtest = derive2 { name="multtest"; version="2.37.0"; sha256="1xlizjdzvxn0i9gs1jpkb07fkkx1prrr1v5n6kfvff9izh40cx6j"; depends=[Biobase BiocGenerics MASS survival]; }; muscle = derive2 { name="muscle"; version="3.23.0"; sha256="110wvrf2isiw2by15vkxsds5sxy68l1vav8fq55f5f8lx77450yp"; depends=[Biostrings]; }; - myvariant = derive2 { name="myvariant"; version="1.11.0"; sha256="14mskpia58g17ydcv2d535kslj0fwm8rm0n4mv1qm0rff81v5hn3"; depends=[GenomeInfoDb Hmisc httr jsonlite magrittr plyr S4Vectors VariantAnnotation]; }; + mygene = derive2 { name="mygene"; version="1.17.2"; sha256="1fi43b84q73kfyq6dincnkx7glhzxw8c42vy63k2j19dqygzc0k7"; depends=[GenomicFeatures Hmisc httr jsonlite plyr S4Vectors sqldf]; }; + myvariant = derive2 { name="myvariant"; version="1.11.1"; sha256="0p4wan3cwmag2nnxza6zqc3rvidgcg6xdk3aqp1d40v1vyxd4j8c"; depends=[GenomeInfoDb Hmisc httr jsonlite magrittr plyr S4Vectors VariantAnnotation]; }; mzID = derive2 { name="mzID"; version="1.19.0"; sha256="0czwvilzp756qfyjzf6x4wskg7w35zwl3df3md4p03v95c1ynbdk"; depends=[doParallel foreach iterators plyr ProtGenerics XML]; }; - mzR = derive2 { name="mzR"; version="2.15.1"; sha256="0m9q5ja326wz7cjmd6b1lvkhjggg5mlw8mxaqa90fs4qz6cr8hw6"; depends=[Biobase BiocGenerics ProtGenerics Rcpp Rhdf5lib zlibbioc]; }; + mzR = derive2 { name="mzR"; version="2.15.5"; sha256="1kbnxini43zw1mvmbv15ms1na4d2piirzqq79w3d45a4dsdyjkkq"; depends=[Biobase BiocGenerics ncdf4 ProtGenerics Rcpp Rhdf5lib zlibbioc]; }; ncdfFlow = derive2 { name="ncdfFlow"; version="2.27.0"; sha256="0m29ncb8i4xndialy9x8iagyvamiacq6jvdbl8v9m0f18ygv9y81"; depends=[BH Biobase BiocGenerics flowCore flowViz Rcpp RcppArmadillo Rhdf5lib zlibbioc]; }; - ndexr = derive2 { name="ndexr"; version="1.3.0"; sha256="0558086vrjiliwpjyvwszy5dimq4p39x3gwiywx7jdjlzgwcv44q"; depends=[httr igraph jsonlite plyr tidyr]; }; + ndexr = derive2 { name="ndexr"; version="1.3.1"; sha256="1nann1ndc6zy04inb4ag7axi5hl407xr7v283lad1gvqmhrjnzii"; depends=[httr igraph jsonlite plyr tidyr]; }; nem = derive2 { name="nem"; version="2.55.0"; sha256="0y0yp1bq3ixkxdqjx4lbx5h1yfx2vsia2zpqnjjvp9hzqjddvvbl"; depends=[boot e1071 graph limma plotrix RBGL RColorBrewer Rgraphviz statmod]; }; - netReg = derive2 { name="netReg"; version="1.5.0"; sha256="15dzz0068s38rxp0vjz9ssa09575xw5nggxl86r2zxcmb93x3yng"; depends=[Rcpp RcppArmadillo]; }; - netSmooth = derive2 { name="netSmooth"; version="1.1.0"; sha256="1d2mpc9n32aah9dnmwk2bc44c9nq006i4xj79hg7z6cvsxkh67cb"; depends=[cluster clusterExperiment data_table entropy Matrix scater SingleCellExperiment SummarizedExperiment]; }; + netReg = derive2 { name="netReg"; version="1.5.1"; sha256="0zw8q4dy893jdsjmb3zhy66g8y0w6m9iqvf360bhrnr5kzdfi8ac"; depends=[Rcpp RcppArmadillo]; }; + netSmooth = derive2 { name="netSmooth"; version="1.1.1"; sha256="0pfqn3wmkmh4wvyy72pvy4f0z3h9vnpnnqp9l1cwgkpwwzlqsk9z"; depends=[cluster clusterExperiment data_table entropy Matrix scater SingleCellExperiment SummarizedExperiment]; }; netbenchmark = derive2 { name="netbenchmark"; version="1.13.0"; sha256="0ssagk6gwdbrqwc037y05xjbnaiv7k5mq8rmwmx6y3d74jwwpb3d"; depends=[c3net corpcor fdrtool GeneNet GENIE3 grndata Matrix minet PCIT pracma Rcpp]; }; netbiov = derive2 { name="netbiov"; version="1.15.0"; sha256="1njiy14g8pf4yps4npwsm4x883qgixwvv0f3p2pb69p9r4kg0phy"; depends=[igraph]; }; - nethet = derive2 { name="nethet"; version="1.13.0"; sha256="0kvwwcwm4hx1r3f24s84pw19vms0aj0bacd79c3r7z26mlmzw7zh"; depends=[CompQuadForm GeneNet ggm ggplot2 glasso glmnet GSA huge ICSNP limma mclust multtest mvtnorm network parcor]; }; + nethet = derive2 { name="nethet"; version="1.13.1"; sha256="1rsgm1war7y5hjxcihjjfnha52jphlh3sayh1wmxwxn56cqfnsdr"; depends=[CompQuadForm GeneNet ggm ggplot2 glasso glmnet GSA huge ICSNP limma mclust multtest mvtnorm network parcor]; }; netprioR = derive2 { name="netprioR"; version="1.7.0"; sha256="076b72g6b9k2zz277i6whjw49jcl6b3bmr9n652nc11d1ydwq3ic"; depends=[doParallel dplyr foreach ggplot2 gridExtra Matrix pROC sparseMVN]; }; netresponse = derive2 { name="netresponse"; version="1.41.0"; sha256="1spzd74z279rvpw0vpw3bw19gimhcdrcxk6hgxv1w7b0nllih606"; depends=[dmt ggplot2 graph igraph mclust minet plyr qvalue RColorBrewer reshape2 Rgraphviz]; }; networkBMA = derive2 { name="networkBMA"; version="2.21.0"; sha256="1gax5312r6cz4s1qxxlg8k63dlk4ja8b57c2br1q0kpcdgbwhrqr"; depends=[BH BMA leaps Rcpp RcppArmadillo RcppEigen]; }; nnNorm = derive2 { name="nnNorm"; version="2.45.0"; sha256="0m8zcv7kyv7ll6bw599nlihmssfizivkrfm1sqr1ndjwmc8b6blp"; depends=[marray nnet]; }; nondetects = derive2 { name="nondetects"; version="2.11.0"; sha256="0iiwvad8cb3g2a7701vci7g2qkvhc43arw4cw7zpmg46qk6yhvv0"; depends=[arm Biobase HTqPCR limma mvtnorm]; }; normalize450K = derive2 { name="normalize450K"; version="1.9.0"; sha256="01j9gp2d7b8n30ckf61ywncw0il81lf6d0sfczr39bqdq2x2xyj3"; depends=[Biobase illuminaio quadprog]; }; - normr = derive2 { name="normr"; version="1.7.1"; sha256="15ajyr38km4fph8np8r171j4f97fwyvy0jcqdbs79gdh792h12sm"; depends=[bamsignals GenomeInfoDb GenomicRanges IRanges qvalue Rcpp rtracklayer]; }; + normr = derive2 { name="normr"; version="1.7.2"; sha256="16f73sigq43f5fy74zhcz9pzcvd9hra5yzq4fp5sdkhnsnjd0b02"; depends=[bamsignals GenomeInfoDb GenomicRanges IRanges qvalue Rcpp rtracklayer]; }; npGSEA = derive2 { name="npGSEA"; version="1.17.0"; sha256="0fw33zgrp9wkchddagsd93ijkspi20d8p7yvsqspqrjy3yv6yq3i"; depends=[Biobase BiocGenerics GSEABase]; }; - nucleR = derive2 { name="nucleR"; version="2.13.0"; sha256="17fndr7wp7i31k3g18chm6nvqmh1di8s0l0v3kp61sn7v4qbfcc8"; depends=[Biobase BiocGenerics Biostrings dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges magrittr Rsamtools S4Vectors ShortRead]; }; + nuCpos = derive2 { name="nuCpos"; version="0.99.1"; sha256="0p1nijap5a66q9ldh3mqdjg7b29wz1pfixy3zrwhmr05gar5c78y"; depends=[]; }; + nucleR = derive2 { name="nucleR"; version="2.13.1"; sha256="19y523lg3a2jb9ajqyz0qky292makxmirj9f9244n9xmcm84sm2w"; depends=[Biobase BiocGenerics Biostrings dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges magrittr Rsamtools S4Vectors ShortRead]; }; nucleoSim = derive2 { name="nucleoSim"; version="1.9.0"; sha256="0bn8gihg4b70gmdyvn91i5adzfbkfaqcb59kv3y56dss04ss736j"; depends=[IRanges S4Vectors]; }; occugene = derive2 { name="occugene"; version="1.41.0"; sha256="13dqbp1kaan56xqlgfdqrld0l3qwky6487mf9j0g7788yxwl1fnm"; depends=[]; }; odseq = derive2 { name="odseq"; version="1.9.0"; sha256="0yyg4y77ch7x0f6xa10wnz8kydc2pjrrpbvdc448388acmmbpdbl"; depends=[kebabs mclust msa]; }; - oligo = derive2 { name="oligo"; version="1.45.0"; sha256="1w36wqry07ml048q55xnckb2mldv4llivsc72b9j5vhn54776n9d"; depends=[affxparser affyio Biobase BiocGenerics Biostrings DBI ff oligoClasses preprocessCore RSQLite zlibbioc]; }; - oligoClasses = derive2 { name="oligoClasses"; version="1.43.1"; sha256="14h79m2pq7a5472xh9rvbn5dfr07nczx0iz8g7jc7sji10jp83nd"; depends=[affyio Biobase BiocGenerics BiocInstaller Biostrings DBI ff foreach GenomicRanges IRanges RSQLite S4Vectors SummarizedExperiment]; }; - omicRexposome = derive2 { name="omicRexposome"; version="1.3.0"; sha256="1x18vkfn1m8cwzwdg9lvpbmiprgpy3hs4x9h6jwqavgdnpq8lv60"; depends=[Biobase ggplot2 ggrepel gridExtra isva limma omicade4 PMA SmartSVA stringr SummarizedExperiment sva]; }; + oligo = derive2 { name="oligo"; version="1.45.2"; sha256="01z9jhnnnnaprpp7zcl4727wkwrhn25djb94fiw7ycb830nqnkxv"; depends=[affxparser affyio Biobase BiocGenerics Biostrings DBI ff oligoClasses preprocessCore RSQLite zlibbioc]; }; + oligoClasses = derive2 { name="oligoClasses"; version="1.43.3"; sha256="13c7hkbifylm315h4qgqbn9fv5i0742k4rmcjf72ll9wj1yqjzf9"; depends=[affyio Biobase BiocGenerics BiocManager Biostrings DBI ff foreach GenomicRanges IRanges RSQLite S4Vectors SummarizedExperiment]; }; + omicRexposome = derive2 { name="omicRexposome"; version="1.3.1"; sha256="14dqybpgj57avgsmjhf63lcy5n8r4g77idlpnblkqj0c232mpq6v"; depends=[Biobase ggplot2 ggrepel gridExtra isva limma MultiDataSet omicade4 PMA rexposome SmartSVA stringr SummarizedExperiment sva]; }; omicade4 = derive2 { name="omicade4"; version="1.21.0"; sha256="055jnv8m9fhj2hixbc997mqv56p07azg40k8qb91mdc8fidypka6"; depends=[ade4 made4]; }; - omicplotR = derive2 { name="omicplotR"; version="1.1.2"; sha256="0myr943y0dvpyh75sjc41cj9i77psmy7j60vl3y4daqd9vbgpkws"; depends=[ALDEx2 compositions knitr matrixStats rmarkdown shiny vegan zCompositions]; }; + omicplotR = derive2 { name="omicplotR"; version="1.1.4"; sha256="0d2jhnjhxl2kl8s33fl45v2yyb85gjx9api8qwhpiny4bh12rq3q"; depends=[ALDEx2 compositions knitr matrixStats rmarkdown shiny vegan zCompositions]; }; omicsPrint = derive2 { name="omicsPrint"; version="1.1.0"; sha256="0zsx8zabz07jyfl1xj28ak6k69jfrrig38psl7qny82ydz8bnbas"; depends=[MASS matrixStats MultiAssayExperiment RaggedExperiment SummarizedExperiment]; }; oncomix = derive2 { name="oncomix"; version="1.3.0"; sha256="0rpwkksxakhwhqvir646gj0x8b1nqsnc2cvjzvh0mlxvv4zmmc0n"; depends=[ggplot2 ggrepel mclust RColorBrewer SummarizedExperiment]; }; - oneSENSE = derive2 { name="oneSENSE"; version="1.3.0"; sha256="1krimcp6p2m6ls7vkkyfpacjxmg8fa1shwjw5cl2nvcgbn391k15"; depends=[flowCore gplots plotly Rtsne scatterplot3d shiny shinyFiles webshot]; }; + oneSENSE = derive2 { name="oneSENSE"; version="1.3.1"; sha256="15790wlbw8ff752lqipmib5mq1chq1wvrrq6yj5zargdv4lffrik"; depends=[flowCore gplots plotly Rtsne scatterplot3d shiny shinyFiles webshot]; }; onlineFDR = derive2 { name="onlineFDR"; version="0.99.7"; sha256="18naq5jfds1njalqqsi6b1hs2sld55flnv63s8yk2cnhpjcfyq47"; depends=[]; }; - ontoProc = derive2 { name="ontoProc"; version="1.3.1"; sha256="0hh9rha7b5y3hnahmk1mkmwi22bdrjnm6r7fym2lpgdaihs3b43z"; depends=[AnnotationDbi Biobase ontologyIndex S4Vectors shiny]; }; - openCyto = derive2 { name="openCyto"; version="1.19.1"; sha256="1i8n1yzrnmbl0h6ykqj9hl30nml8nvlvz4b975w1jh5sp21x0gcv"; depends=[Biobase clue data_table flowClust flowCore flowStats flowViz flowWorkspace graph gtools ks lattice MASS ncdfFlow plyr R_utils RBGL RColorBrewer Rcpp rrcov]; }; - openPrimeR = derive2 { name="openPrimeR"; version="1.3.0"; sha256="0sq1f9ir2n9rrxa10cjwfsk1rwmi0aryd31z9zb9i5hciinv99gy"; depends=[ape BiocGenerics Biostrings DECIPHER digest distr distrEx dplyr fitdistrplus foreach GenomicRanges ggplot2 Hmisc IRanges lpSolveAPI magrittr openxlsx plyr RColorBrewer reshape2 S4Vectors scales seqinr stringdist stringr uniqtag XML]; }; - openPrimeRui = derive2 { name="openPrimeRui"; version="1.3.0"; sha256="08ysqxf6dl5rsbxgfv6z9llxclmqn2gwf775r3py0x49sx4ra2hn"; depends=[DT openPrimeR rmarkdown shiny shinyBS shinyjs]; }; - oposSOM = derive2 { name="oposSOM"; version="1.19.1"; sha256="16rnwlay7m6y4cf9333bq7zwnp5lcy1i1p23zl0mcvzlb9mam4j1"; depends=[ape arules Biobase biomaRt fastICA fdrtool igraph pixmap scatterplot3d som tsne]; }; - oppar = derive2 { name="oppar"; version="1.9.0"; sha256="0j26hqskvfv8qb13kmi4dcg3ylzxgwxl4xn4chvi5k8svli4r2qw"; depends=[Biobase GSEABase GSVA]; }; - pRolocGUI = derive2 { name="pRolocGUI"; version="1.15.0"; sha256="0vrpylrnl02abj6akcp0fb06fk18k42xv78g5f4cyy2jqdgqgijq"; depends=[Biobase dplyr DT ggplot2 MSnbase scales shiny]; }; + ontoProc = derive2 { name="ontoProc"; version="1.3.5"; sha256="0xv0hin8khcpyj6dxnadncy62isdixjgaq8m1n8i49b0f368bgji"; depends=[AnnotationDbi Biobase ontologyIndex S4Vectors shiny]; }; + openCyto = derive2 { name="openCyto"; version="1.19.2"; sha256="0m2lalpd9hn1vn62n6lfz4kflfdq188m5vcxdjmlj7wzkxijdcmw"; depends=[Biobase BiocGenerics clue data_table flowClust flowCore flowStats flowViz flowWorkspace graph gtools ks lattice MASS ncdfFlow plyr R_utils RBGL RColorBrewer Rcpp rrcov]; }; + openPrimeR = derive2 { name="openPrimeR"; version="1.3.2"; sha256="0fc12pzp2b7ns1k039v43ns1d10k9lmww6pjrgvyxhrwdd16b9vn"; depends=[ape BiocGenerics Biostrings DECIPHER digest distr distrEx dplyr fitdistrplus foreach GenomicRanges ggplot2 Hmisc IRanges lpSolveAPI magrittr openxlsx plyr RColorBrewer reshape2 S4Vectors scales seqinr stringdist stringr tinytex uniqtag XML]; }; + openPrimeRui = derive2 { name="openPrimeRui"; version="1.3.1"; sha256="10hky16l94bx0n3r12kq8951wjcm30kgp8qciqgji563kjq9lbww"; depends=[DT openPrimeR rmarkdown shiny shinyBS shinyjs]; }; + oposSOM = derive2 { name="oposSOM"; version="1.99.0"; sha256="1k85a2ixnxzclfaw5is9myppmb3slpyd6n1jyg67y0ii6zac2aig"; depends=[ape Biobase biomaRt fastICA fdrtool igraph pixmap Rcpp RcppParallel scatterplot3d tsne]; }; + oppar = derive2 { name="oppar"; version="1.9.1"; sha256="0irzz17xd1vf5syqzr8sp2rv7076xi64mr2anwp63xfx2xh02wrp"; depends=[Biobase GSEABase GSVA]; }; + pRoloc = derive2 { name="pRoloc"; version="1.21.9"; sha256="11l2jssdrg3lz0svnjskk280xlkyzfymfhkq13517zv6jshn23gl"; depends=[Biobase BiocGenerics BiocParallel biomaRt caret class coda dendextend e1071 FNN ggplot2 gtools hexbin kernlab knitr LaplacesDemon lattice MASS mclust mixtools MLInterfaces MSnbase mvtnorm nnet plyr proxy randomForest RColorBrewer Rcpp RcppArmadillo sampling scales]; }; + pRolocGUI = derive2 { name="pRolocGUI"; version="1.15.2"; sha256="0yljbianwqb214g47s9s5s80sfiay6vxrgkzciibyr0bmn7bmrmb"; depends=[Biobase dplyr DT ggplot2 MSnbase pRoloc scales shiny]; }; paircompviz = derive2 { name="paircompviz"; version="1.19.0"; sha256="1glli54k00gpm04p177hwgsdq352ypc7r8swbksk18j8xghk8cq4"; depends=[Rgraphviz]; }; pandaR = derive2 { name="pandaR"; version="1.13.0"; sha256="13mv40jsclngfzcapscw0wxv67dd2ym4kkpcvy2v03z37ak3n1fk"; depends=[Biobase BiocGenerics ggplot2 hexbin igraph matrixStats plyr reshape RUnit]; }; - panelcn_mops = derive2 { name="panelcn.mops"; version="1.3.0"; sha256="17d8ms86xvhqprwazi3cnv3sxyaxmammkf3dczka78i0dwl0p0df"; depends=[cn_mops GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors]; }; + panelcn_mops = derive2 { name="panelcn.mops"; version="1.3.1"; sha256="13p3rrmkjv58f3hac26bxgwrknx6bhdhxkg2c4z1yxh9jny96h9a"; depends=[cn_mops GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors]; }; panp = derive2 { name="panp"; version="1.51.0"; sha256="1yrxsjc0r9z0nfgbc9n9p5mhqhyx7x76v7vcjah6hdv4svi78csc"; depends=[affy Biobase]; }; parglms = derive2 { name="parglms"; version="1.13.3"; sha256="0x8j7ffz8h7303n90v27wcb71x75m7j1rq4yz59iv9fpis16yj27"; depends=[BatchJobs BiocGenerics doParallel foreach]; }; - parody = derive2 { name="parody"; version="1.39.0"; sha256="0lkv6csikcm2jw70gz3bkzjzj48w8dlx1gfc0sh5l49q2szn3fha"; depends=[]; }; + parody = derive2 { name="parody"; version="1.39.1"; sha256="0213vnj1mbnc9zhrxidqjz5ls8nrgz7ljmz0f9hrbixn2k369ccl"; depends=[]; }; pathRender = derive2 { name="pathRender"; version="1.49.0"; sha256="1ln36h3jy35398r92i5hm4qvcjfsmc0frpy4dpgi75ab1wgjzb1s"; depends=[AnnotationDbi cMAP graph RColorBrewer Rgraphviz]; }; pathVar = derive2 { name="pathVar"; version="1.11.2"; sha256="1v0pia06qx995b9y4vllp844f5846877zyl587xz5026mnbr5p5l"; depends=[data_table EMT ggplot2 gridExtra Matching mclust]; }; pathifier = derive2 { name="pathifier"; version="1.19.0"; sha256="0sazl4wi6pivvr2r098parc8j68hq8apfjb0nk6vicfisx0dqk1h"; depends=[princurve R_oo]; }; pathprint = derive2 { name="pathprint"; version="1.11.3"; sha256="14x9i2gkra49aqnpi0xd94430nl05sw3yr85ramaxrzavm7lxvsf"; depends=[]; }; - pathview = derive2 { name="pathview"; version="1.21.0"; sha256="0s8mq51gknca91qgy4q7fmgm4ga251w214f3zapc7zlxykb2qrys"; depends=[AnnotationDbi graph KEGGgraph KEGGREST org_Hs_eg_db png Rgraphviz XML]; }; - paxtoolsr = derive2 { name="paxtoolsr"; version="1.15.0"; sha256="1fr6w5jbhj5rdsb53cafzsdn23b2rfcyyi6ivcfvn408x59cg3fg"; depends=[data_table httr igraph jsonlite plyr R_utils rJava rjson XML]; }; + pathview = derive2 { name="pathview"; version="1.21.2"; sha256="14021aqb36s56w9j439ydgbv2b4yk7sbsndrmyzbdxrisi6q3xyw"; depends=[AnnotationDbi graph KEGGgraph KEGGREST org_Hs_eg_db png Rgraphviz XML]; }; + paxtoolsr = derive2 { name="paxtoolsr"; version="1.15.1"; sha256="13rc66d9fyd85haylmc55irvshrfrxgny3l539ga1zq4h6bhlxz6"; depends=[httr igraph jsonlite plyr R_utils readr rJava rjson XML]; }; pbcmc = derive2 { name="pbcmc"; version="1.9.0"; sha256="1hxhpxixl5jfpiqpwqvkfcnp2k7sw43asc5ikj6qpl4p5xrrfn0d"; depends=[Biobase BiocGenerics BiocParallel cowplot genefu ggplot2 gridExtra limma reshape2]; }; - pcaExplorer = derive2 { name="pcaExplorer"; version="2.7.0"; sha256="138a6qrg0cqq5n5565i5y4fzlbk79hjk11ziz8hh2dxbymv1h9mq"; depends=[AnnotationDbi biomaRt d3heatmap DESeq2 DT genefilter GenomicRanges ggplot2 ggrepel GO_db GOstats IRanges knitr limma NMF pheatmap plyr rmarkdown S4Vectors scales shiny shinyAce shinyBS shinydashboard SummarizedExperiment threejs tidyr topGO]; }; - pcaGoPromoter = derive2 { name="pcaGoPromoter"; version="1.25.0"; sha256="10c08lawhg1p7jydk2bb5z6rjn7pjrfr069s06syababq75j1pnw"; depends=[AnnotationDbi Biostrings ellipse]; }; - pcaMethods = derive2 { name="pcaMethods"; version="1.73.0"; sha256="0k079s8fwqhwk5hmbl0rqi52nav2dzbbsilnn2a2x92c2rzfiqc0"; depends=[Biobase BiocGenerics MASS Rcpp]; }; + pcaExplorer = derive2 { name="pcaExplorer"; version="2.7.6"; sha256="0dwhd5ybli05wlv8j0l639phbksm0h9g418bdq2x9f7h1vskr3z5"; depends=[AnnotationDbi biomaRt d3heatmap DESeq2 DT genefilter GenomicRanges ggplot2 ggrepel GO_db GOstats IRanges knitr limma NMF pheatmap plyr rmarkdown S4Vectors scales shiny shinyAce shinyBS shinydashboard SummarizedExperiment threejs tidyr topGO]; }; + pcaGoPromoter = derive2 { name="pcaGoPromoter"; version="1.25.1"; sha256="1dfvd3bb7v5dz58icb7j802fj358waa6xs8sasz0kvlvapma9kx1"; depends=[AnnotationDbi Biostrings ellipse]; }; + pcaMethods = derive2 { name="pcaMethods"; version="1.73.1"; sha256="0vslvglp2j6zkkbjcwj66bbv683qzjnqlpa8adb8wmgc2l4a1rkv"; depends=[Biobase BiocGenerics MASS Rcpp]; }; pcot2 = derive2 { name="pcot2"; version="1.49.0"; sha256="0ffg35602h7k904dq47sgnfyky041alnypaf3gvx7m6f8yszq46c"; depends=[amap Biobase]; }; - pcxn = derive2 { name="pcxn"; version="2.3.0"; sha256="1d7maq8vbxcs1bvz4qlc29583nbfq6jpan0gsqday51xj7ngqbcs"; depends=[pcxnData pheatmap]; }; + pcxn = derive2 { name="pcxn"; version="2.3.1"; sha256="0yp9hfbval7ind2nqa2n4nfafgbrfr4gq7hm7dkrfampp7if66j3"; depends=[pcxnData pheatmap]; }; pdInfoBuilder = derive2 { name="pdInfoBuilder"; version="1.45.0"; sha256="15whr6rjdf75z6wg9k8zsyvfn08vidimzx2rw6ki1zmbh0fz8in6"; depends=[affxparser Biobase BiocGenerics Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; pepStat = derive2 { name="pepStat"; version="1.15.0"; sha256="08dpwiphw9s8dafy4m946jxi1jfyc3lzzdg4h0ax7d6knzq0za73"; depends=[Biobase data_table fields GenomicRanges ggplot2 IRanges limma plyr]; }; pepXMLTab = derive2 { name="pepXMLTab"; version="1.15.0"; sha256="1bwp82zvg65yrhlx1xk2jci9fqsgc83h1x7124ci2afzlvx56ms5"; depends=[XML]; }; perturbatr = derive2 { name="perturbatr"; version="1.1.0"; sha256="0cwk2f0bm9vlgdngb9blcpcwg2gl8ik0rdx0a6i36qzdd256qk91"; depends=[assertthat diffusr doParallel dplyr foreach formula_tools ggplot2 igraph lazyeval lme4 magrittr rlang scales tibble tidyr]; }; - pgca = derive2 { name="pgca"; version="1.5.0"; sha256="1scxcrfs8b0rw38c0v569dnq2b5viqvm3ckjwm1gzqgxcjy6r324"; depends=[]; }; - phantasus = derive2 { name="phantasus"; version="1.1.2"; sha256="1g4q9ff11i7xfw29g9mqwqvr1py4mwwddd0yr1dhw92abbc5w2z4"; depends=[assertthat Biobase fgsea GEOquery ggplot2 htmltools httpuv httr jsonlite limma opencpu protolite rhdf5 Rook stringr svglite]; }; + pgca = derive2 { name="pgca"; version="1.5.1"; sha256="11la42gqiqxwlms84lc1dsvpys3bmrzwz5d8vcx4xwnl9pc3lqhh"; depends=[]; }; + phantasus = derive2 { name="phantasus"; version="1.1.5"; sha256="148mxhmc0qymjdkx64ji4karaazx89vmwmyrrk8d1g7m3lj1qpvl"; depends=[assertthat Biobase ccaPP fgsea GEOquery ggplot2 gtable htmltools httpuv httr jsonlite limma Matrix Matrix_utils opencpu pheatmap protolite rhdf5 Rook scales stringr svglite]; }; phenoTest = derive2 { name="phenoTest"; version="1.29.0"; sha256="10mw83ivb99ipndjjc5r69wpsanfvzx01bfpzhq5pygjzhl6m8jb"; depends=[annotate AnnotationDbi Biobase biomaRt BMA Category ellipse genefilter ggplot2 gplots GSEABase Heatplus hgu133a_db Hmisc hopach HTSanalyzeR limma mgcv SNPchip survival xtable]; }; phenopath = derive2 { name="phenopath"; version="1.5.0"; sha256="05a1d7apyhg4d4nahl97i0794fji6dnnd454wfww89adjx68nfnc"; depends=[dplyr ggplot2 Rcpp SummarizedExperiment tibble tidyr]; }; - philr = derive2 { name="philr"; version="1.7.0"; sha256="165k6cnj08lpkw66zljiqqwfy1knd2n46mg734d0fiy72j2va4z2"; depends=[ape ggplot2 ggtree phangorn tidyr]; }; - phosphonormalizer = derive2 { name="phosphonormalizer"; version="1.5.0"; sha256="0m9lgg1wcyy3ppxvmkgdv5ccz48j5mw1fsxg21vw08hpm6fm9y60"; depends=[matrixStats plyr]; }; - phyloseq = derive2 { name="phyloseq"; version="1.25.0"; sha256="1344gil3dsnvy92fsp91wvh6j1rd7xzjjapmjkvdz5rjs5rh0kd2"; depends=[ade4 ape Biobase BiocGenerics biomformat Biostrings cluster data_table foreach ggplot2 igraph multtest plyr reshape2 scales vegan]; }; - piano = derive2 { name="piano"; version="1.21.0"; sha256="1d7gld59bryzcvnvl6x8wx3v1wji58rs4zszsqpyz73qmw8ikw0d"; depends=[Biobase BiocGenerics fgsea gplots igraph marray relations]; }; + philr = derive2 { name="philr"; version="1.7.3"; sha256="1nzn6xv5kkm1babdimhvcjd5ql58hhj772asjd1i6r4qbidzyjfd"; depends=[ape ggplot2 ggtree phangorn tidyr]; }; + phosphonormalizer = derive2 { name="phosphonormalizer"; version="1.5.1"; sha256="1bvbjm42nr1mjxixbcd39g4qz4171qrb7x7ssz5jkrf8y3j26yxa"; depends=[matrixStats plyr]; }; + phyloseq = derive2 { name="phyloseq"; version="1.25.3"; sha256="081f1fwkda6am9i64y2zq8z6xiz9z7hfz3agrlxkfrrfc455ch65"; depends=[ade4 ape Biobase BiocGenerics biomformat Biostrings cluster data_table foreach ggplot2 igraph multtest plyr reshape2 scales vegan]; }; + piano = derive2 { name="piano"; version="1.21.1"; sha256="1adwsk3vkdg3695yjfw6sip1ww8zfd90dmmbzsf1kryidlkl60nz"; depends=[Biobase BiocGenerics fgsea gplots igraph marray relations]; }; pickgene = derive2 { name="pickgene"; version="1.53.0"; sha256="1nklcgm3wryljq22hc3fcja6x2kwa9bilp76gzhy8zpj8swwjszl"; depends=[MASS]; }; pint = derive2 { name="pint"; version="1.31.0"; sha256="10kwlp947h03w8xqcs9qcyp21wvx60sl47k2cnbrdhva3wf35vp3"; depends=[dmt Matrix mvtnorm]; }; - pkgDepTools = derive2 { name="pkgDepTools"; version="1.47.1"; sha256="08wc5qklyddz5p237q75dipvykiksdr17xcd2qkfzj3138wfkgvy"; depends=[graph RBGL]; }; + pkgDepTools = derive2 { name="pkgDepTools"; version="1.47.2"; sha256="12bc56a5l3p9mdi15ryinicvyyzv58qwprksixjwm54mx42r5kw2"; depends=[graph RBGL]; }; plateCore = derive2 { name="plateCore"; version="1.39.0"; sha256="0vf42ms3vky8n2n7x16kc284252zifjmch32lsww0lmsxv0h857n"; depends=[Biobase flowCore flowStats flowViz lattice latticeExtra MASS robustbase]; }; - plethy = derive2 { name="plethy"; version="1.19.0"; sha256="05v123qrpasl11kivp1p2ib0v638yi4y19gk4df8mfald95nxcmn"; depends=[Biobase BiocGenerics DBI ggplot2 IRanges plyr RColorBrewer reshape2 RSQLite S4Vectors Streamer]; }; + plethy = derive2 { name="plethy"; version="1.19.1"; sha256="0pmrryxkxpgrb8c4pr25ajfn3v6m53810xz9da1j3hnyk9l42ha7"; depends=[Biobase BiocGenerics DBI ggplot2 IRanges plyr RColorBrewer reshape2 RSQLite S4Vectors Streamer]; }; plgem = derive2 { name="plgem"; version="1.53.0"; sha256="04hwkr3v126mildi76jfr5b8s8lly9z60iydh5i3dc5zsyd6h84f"; depends=[Biobase MASS]; }; plier = derive2 { name="plier"; version="1.51.0"; sha256="1m7bwaypnaw7kk756k0wl6xi3s0j9awi986lpa8ncjv587q0442h"; depends=[affy Biobase]; }; + plotGrouper = derive2 { name="plotGrouper"; version="0.99.43"; sha256="1b36ay09h0fx3kcyiw1pd48750b6slqzidw8g2bvjpgw2i03f4ww"; depends=[colourpicker dplyr egg ggplot2 ggpubr gridExtra gtable Hmisc magrittr readr readxl rlang scales shiny shinythemes stringr tibble tidyr]; }; plrs = derive2 { name="plrs"; version="1.21.0"; sha256="18k3xad3gmkw74klyvqzbvnlr1pq93is6dqxm2bxb4cmzar12f6k"; depends=[Biobase BiocGenerics CGHbase ic_infer marray quadprog Rcsdp]; }; plw = derive2 { name="plw"; version="1.41.0"; sha256="0q9dwj7rznhdj1h34ygnw0snfswnr8ycx0927jzsiiycz31n8z0f"; depends=[affy MASS]; }; - plyranges = derive2 { name="plyranges"; version="1.1.8"; sha256="10p0i8q229gy0z3fg90m3xaib32v9w1zxcmn3gb87ipz9mic8ykk"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicAlignments GenomicRanges IRanges magrittr rlang Rsamtools rtracklayer S4Vectors tidyr tidyselect]; }; + plyranges = derive2 { name="plyranges"; version="1.1.10"; sha256="0q9dsgnflr9gly3x4kbvr8ambfz5k5mvgn6hj9qyyb2vy6viqvni"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicAlignments GenomicRanges IRanges magrittr rlang Rsamtools rtracklayer S4Vectors tidyr tidyselect]; }; pmm = derive2 { name="pmm"; version="1.13.0"; sha256="0p0xnkz6hgnpvai7947861kw5hmjwwf3zj2y423whdr7x2lpdayw"; depends=[lme4]; }; - podkat = derive2 { name="podkat"; version="1.13.0"; sha256="1h297id3gxix06xmhqkl1lc5gfp4vi8jkfh2gpld4bw233fvi6h5"; depends=[Biobase BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Matrix Rcpp Rsamtools]; }; + podkat = derive2 { name="podkat"; version="1.13.1"; sha256="0brp4d5y0708yv1b2jylywp4j7fknxy5vayss5jr9xp82sbahagz"; depends=[Biobase BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Matrix Rcpp Rsamtools]; }; pogos = derive2 { name="pogos"; version="1.1.0"; sha256="1135bxxhamcxs5hn6hq43hc7s7cr9v0jy2884dz7f9qvgnrqhymi"; depends=[ggplot2 httr ontoProc rjson S4Vectors shiny]; }; - polyester = derive2 { name="polyester"; version="1.17.0"; sha256="0dz73jsyx3yivpmxz7p1q14i2rvj388bq53d7w1mz3ixrqilzgz2"; depends=[Biostrings IRanges limma logspline S4Vectors zlibbioc]; }; - powerTCR = derive2 { name="powerTCR"; version="1.1.1"; sha256="0427r8qwy8j3z2mpvka2b6y2k39nwiy86gb06njs6m19f597936v"; depends=[cubature evmix magrittr purrr tcR truncdist VGAM]; }; + polyester = derive2 { name="polyester"; version="1.17.2"; sha256="1f2vd15qfkbka9pi88n61mrsmxx7pnl88aiarm5ahy4nmdv3fyrq"; depends=[Biostrings IRanges limma logspline S4Vectors zlibbioc]; }; + powerTCR = derive2 { name="powerTCR"; version="1.1.4"; sha256="0zf2ip194y5ad7xzzkplv1lbilpns2l78flf8snrvi14n8588gjj"; depends=[cubature doParallel evmix foreach magrittr purrr tcR truncdist vegan VGAM]; }; ppiStats = derive2 { name="ppiStats"; version="1.47.0"; sha256="0prrs1g99g55i993689c6s497crijnl96z2qzgga1y9w4zbf6g88"; depends=[Biobase Category graph lattice ppiData RColorBrewer ScISI]; }; - pqsfinder = derive2 { name="pqsfinder"; version="1.9.0"; sha256="1igg500dvwq1lvxyl0c8fcdkgpmxzsxcd6c24pz0dhjqsaxml2as"; depends=[BH Biostrings GenomicRanges IRanges Rcpp S4Vectors]; }; + pqsfinder = derive2 { name="pqsfinder"; version="1.9.2"; sha256="1hj0mx9ii7rxjcwn8mg2ywhlzpf4ckwxf8w9ms7fkj7kk37r9wy1"; depends=[BH Biostrings GenomicRanges IRanges Rcpp S4Vectors]; }; prada = derive2 { name="prada"; version="1.57.0"; sha256="0isj6w4lzfsqwwzs3njddabn2xznjqhp0bbihwfvc31kiya9k8di"; depends=[Biobase BiocGenerics MASS RColorBrewer rrcov]; }; - prebs = derive2 { name="prebs"; version="1.21.0"; sha256="0q5ibq492jw8axp50qijn0fsa5qxarxnlxz4s8hv3ql6rjlsiw8v"; depends=[affy Biobase GenomeInfoDb GenomicAlignments GenomicRanges IRanges RPA S4Vectors]; }; + prebs = derive2 { name="prebs"; version="1.21.3"; sha256="0gqgl5sqsn92b5rck85nn4ri5b6mzvgyk13n9dp5qa0hxvdifhx4"; depends=[affy Biobase GenomeInfoDb GenomicAlignments GenomicRanges IRanges RPA S4Vectors]; }; predictionet = derive2 { name="predictionet"; version="1.27.0"; sha256="0ls88pw7k1vy3qjzl91dj6kfbkgvz67448zhj1b3g308b33qasqk"; depends=[catnet igraph MASS penalized RBGL]; }; preprocessCore = derive2 { name="preprocessCore"; version="1.43.0"; sha256="13859ip42jk6j6ngs8bwkzfarrqzd0jzhq9kdgsnicl9kf9k9vj6"; depends=[]; }; + primirTSS = derive2 { name="primirTSS"; version="0.99.29"; sha256="17d2x3y5iiz0r840d8adkb7lypdyhp76izxbkj42b89rqsfm5v2j"; depends=[BiocGenerics Biostrings BSgenome_Hsapiens_UCSC_hg38 dplyr GenomicRanges GenomicScores Gviz IRanges JASPAR2018 phastCons100way_UCSC_hg38 purrr R_utils rtracklayer S4Vectors shiny stringr TFBSTools tibble tidyr]; }; proBAMr = derive2 { name="proBAMr"; version="1.15.0"; sha256="1cl1ns7m1d1n3ayhga7f45xrjx9cy2a8l9xs2z7x3074kx8h8xxg"; depends=[AnnotationDbi Biostrings GenomicFeatures GenomicRanges IRanges rtracklayer]; }; proFIA = derive2 { name="proFIA"; version="1.7.0"; sha256="1qx79xamr77rjdfr50ms0dzrmwqwc2fzd24k2njbknxvz8kay5is"; depends=[Biobase BiocParallel minpack_lm missForest pracma ropls xcms]; }; - procoil = derive2 { name="procoil"; version="2.9.0"; sha256="048wkmsidcw31mqjli2vspkf332ddx74dd709xbw5bkggw5l5a0b"; depends=[Biostrings kebabs S4Vectors]; }; + procoil = derive2 { name="procoil"; version="2.9.1"; sha256="1dhb7aphl93rxqk2k3fx8nrwgbd07wckrfx44c72fq0biam5qi5j"; depends=[Biostrings kebabs S4Vectors]; }; profileScoreDist = derive2 { name="profileScoreDist"; version="1.9.0"; sha256="1jv9szg451ljggx458sgcgiaf1p6i7sin62lhbh6b8jn1s4h7qrw"; depends=[BiocGenerics Rcpp]; }; progeny = derive2 { name="progeny"; version="1.3.0"; sha256="0rini10n59yzyq7bzckbyxvvl2lgj35k4dzm72lx47cws8nlqyl0"; depends=[Biobase]; }; - prot2D = derive2 { name="prot2D"; version="1.19.0"; sha256="1aawirq8plgdrz88yzzqh3p1m8y17ygf2l3a433lzrm3ffz6y3qx"; depends=[Biobase fdrtool impute limma MASS Mulcom qvalue samr st]; }; - proteinProfiles = derive2 { name="proteinProfiles"; version="1.21.0"; sha256="0zvgf4zmx42idyy8c6zfmf4gv22gxpyw1bs8285d9bfjk7qpvgwc"; depends=[]; }; + prot2D = derive2 { name="prot2D"; version="1.19.1"; sha256="141f38lcvrm0nirghx31gr3qzfq3q5zmqvvzcf5071s60hhm3syb"; depends=[Biobase fdrtool impute limma MASS Mulcom qvalue samr st]; }; + proteinProfiles = derive2 { name="proteinProfiles"; version="1.21.1"; sha256="1s35xglin78hv8f83jzi1racvklmnpf3gyjqxl60fj2i8b2r27dz"; depends=[]; }; proteoQC = derive2 { name="proteoQC"; version="1.17.0"; sha256="17a6wmkxr8jfb7nbwykfc562fgj4p8addq5idajag2ijaiycvzz5"; depends=[dplyr ggplot2 MSnbase Nozzle_R1 plotly plyr reshape2 rmarkdown rpx rTANDEM seqinr tidyr VennDiagram XML]; }; psichomics = derive2 { name="psichomics"; version="1.7.0"; sha256="0vj20pw305p4i08s7kxj0np1xxi8mhdlasagypc76ysnlhq0w6bn"; depends=[AnnotationHub cluster colourpicker data_table digest dplyr DT edgeR fastICA fastmatch ggplot2 ggrepel highcharter htmltools httr jsonlite limma miscTools pairsD3 plyr R_utils Rcpp shiny shinyBS shinyjs stringr survival XML xtable]; }; - psygenet2r = derive2 { name="psygenet2r"; version="1.13.0"; sha256="0hpipknbcg3ic6sr19ksy1zs71h2kk3p1bvvhqy4xirajzqf3z41"; depends=[BgeeDB Biobase BiocInstaller biomaRt ggplot2 GO_db igraph labeling RCurl reshape2 stringr topGO]; }; - puma = derive2 { name="puma"; version="3.23.0"; sha256="1h299ach0bff17az4vfa7dbb9x8z3b32mfmg322afpmfvj3xdqa7"; depends=[affy affyio Biobase mclust oligo oligoClasses]; }; - pvac = derive2 { name="pvac"; version="1.29.0"; sha256="0ax1pndxw4knhas0cp54b9gyr3xjl6rriyif1sccmqrszswkdv06"; depends=[affy Biobase]; }; - pvca = derive2 { name="pvca"; version="1.21.0"; sha256="0ayi9f2zd5f3c96w8kfb68nmd6idbg1l19h0ys1zdjgzz1dkqqc2"; depends=[Biobase lme4 Matrix vsn]; }; + psygenet2r = derive2 { name="psygenet2r"; version="1.13.3"; sha256="0ldyrzhxw7m146yfm5fjr917g089f0mnhddinsqmd7h5pykhidb2"; depends=[BgeeDB Biobase BiocManager biomaRt ggplot2 GO_db igraph labeling RCurl reshape2 stringr topGO]; }; + puma = derive2 { name="puma"; version="3.23.3"; sha256="0jk8696hna14c261ni1xpi5klfpgzjci9yd62nkqfvf3pynl12a9"; depends=[affy affyio Biobase mclust oligo oligoClasses]; }; + pvac = derive2 { name="pvac"; version="1.29.2"; sha256="087bmn6snyvw7z3j3xzga31rq4w81fxx46c54drapz6pfjmc0gzy"; depends=[affy Biobase]; }; + pvca = derive2 { name="pvca"; version="1.21.1"; sha256="0j2hqix5ih462rr5mpxav8whvkvng3v497qiznb7nlv20p6swgbi"; depends=[Biobase lme4 Matrix vsn]; }; pwOmics = derive2 { name="pwOmics"; version="1.13.0"; sha256="0y4jsybxd6bcv9hqa25zij5lsbh55790njdy0p383pywbsn2dwvs"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics biomaRt data_table GenomicRanges gplots graph igraph rBiopaxParser STRINGdb]; }; - qPLEXanalyzer = derive2 { name="qPLEXanalyzer"; version="0.99.9"; sha256="0kaa1y5m150b3c6chpkadcj5l446kjq2hhvwf17n1gn58gzmbalv"; depends=[assertthat Biobase BiocGenerics Biostrings dplyr GenomicRanges ggdendro ggplot2 IRanges limma magrittr MSnbase preprocessCore purrr RColorBrewer statmod stringr tibble tidyr]; }; - qcmetrics = derive2 { name="qcmetrics"; version="1.19.0"; sha256="1m2q9lhvk9yicsn5anw88hvs3jg7wqfm9vhm1g43hbgjbqy4jzqj"; depends=[Biobase knitr Nozzle_R1 pander S4Vectors xtable]; }; + qPLEXanalyzer = derive2 { name="qPLEXanalyzer"; version="0.99.12"; sha256="11q97nx0yss8w69jvq58mw34lma700rzkkkxs0qlga4hijjkm3v7"; depends=[assertthat Biobase BiocGenerics Biostrings dplyr GenomicRanges ggdendro ggplot2 IRanges limma magrittr MSnbase preprocessCore purrr RColorBrewer statmod stringr tibble tidyr]; }; + qcmetrics = derive2 { name="qcmetrics"; version="1.19.2"; sha256="043ybq0ykry2r5xh2gv76lbg16723zsflic930q12hc1pxncxa8m"; depends=[Biobase knitr Nozzle_R1 pander S4Vectors xtable]; }; qpcrNorm = derive2 { name="qpcrNorm"; version="1.39.0"; sha256="18h58d58c0hs804n0xzsn0ydp4xw5cvab447zxq50g4adajjf7r8"; depends=[affy Biobase limma]; }; - qpgraph = derive2 { name="qpgraph"; version="2.15.0"; sha256="1q6lrhxq4zra6x3wx3ikc70np8yqz8b6hzgdiy4fxx6b4kjcpnd3"; depends=[annotate AnnotationDbi Biobase BiocParallel GenomeInfoDb GenomicFeatures GenomicRanges graph IRanges Matrix mvtnorm qtl Rgraphviz S4Vectors]; }; + qpgraph = derive2 { name="qpgraph"; version="2.15.2"; sha256="0lw5wfcw9br8k4wr70vp9xqgfjhbnzhjxfw4hzyp9z9h54vb9fay"; depends=[annotate AnnotationDbi Biobase BiocParallel GenomeInfoDb GenomicFeatures GenomicRanges graph IRanges Matrix mvtnorm qtl Rgraphviz S4Vectors]; }; qrqc = derive2 { name="qrqc"; version="1.35.0"; sha256="1mcb7gpncr91lq95vmbf6skjm5hxqlzx25inac3zwj3j4q07ipnk"; depends=[Biostrings biovizBase brew ggplot2 plyr reshape Rsamtools testthat xtable]; }; - qsea = derive2 { name="qsea"; version="1.7.3"; sha256="11icpr1x374r77kn7fdlys37m8q6xi7g84gnn6m0wdx7srla3aal"; depends=[BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges gtools HMMcopy IRanges limma Rsamtools rtracklayer zoo]; }; - quantro = derive2 { name="quantro"; version="1.15.0"; sha256="1r9q1kmql8fgdnljgb17simjkfdm14nn0fxmrh09ijg8640bdis4"; depends=[Biobase doParallel foreach ggplot2 iterators minfi RColorBrewer]; }; + qsea = derive2 { name="qsea"; version="1.7.4"; sha256="1rnm4f9skig9p8i0qz9nrfm6vxnjgi67s8r2665c3c87j52r4gga"; depends=[BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges gtools HMMcopy IRanges limma Rsamtools rtracklayer zoo]; }; + quantro = derive2 { name="quantro"; version="1.15.2"; sha256="0lf3d17b9d5gszpjknzhc5s2k8m31f8qf4k8y2lsrs7kaqr0skq0"; depends=[Biobase doParallel foreach ggplot2 iterators minfi RColorBrewer]; }; quantsmooth = derive2 { name="quantsmooth"; version="1.47.0"; sha256="1w2gwaxy90s6laghgdhxqb0c0s93ci8g61zbrn7xjpd6af1vz1md"; depends=[quantreg]; }; - qusage = derive2 { name="qusage"; version="2.15.0"; sha256="025xjbaw1mkvh0wa656l851f1c2m4sjxqb6xvjks3fz4bwlrk2xr"; depends=[Biobase limma lsmeans nlme]; }; + qusage = derive2 { name="qusage"; version="2.15.1"; sha256="03fxcg63mlxkc3m3pj5y828spk42h3f5h8l9zcfjmf93qacal6s7"; depends=[Biobase limma lsmeans nlme]; }; qvalue = derive2 { name="qvalue"; version="2.13.0"; sha256="1g6lfgn73z68imy6qmh9s1zyniaq1wyx8jyllrk4lxpgk17i5dgh"; depends=[ggplot2 reshape2]; }; r3Cseq = derive2 { name="r3Cseq"; version="1.27.0"; sha256="13cswnxp8ikv95xb3szn7br7xm5ml3mpj365vxhaky2s1x9kxr9p"; depends=[Biostrings data_table GenomeInfoDb GenomicRanges IRanges qvalue RColorBrewer Rsamtools rtracklayer sqldf VGAM]; }; - rBiopaxParser = derive2 { name="rBiopaxParser"; version="2.21.0"; sha256="0bgxw31ivqmzykxhrnzrswf39kxp7sj9kpi4fz8pxggjwnb59pfl"; depends=[data_table XML]; }; + rBiopaxParser = derive2 { name="rBiopaxParser"; version="2.21.1"; sha256="15lzqw4frw59scwarzcncp1a75xaf274bfy17ypwq0y7fnvqvlh5"; depends=[data_table XML]; }; rCGH = derive2 { name="rCGH"; version="1.11.2"; sha256="10284xrdqh0pbn8a3ibwr2znf3lajnimli93lrhs4d60cna8wp9n"; depends=[aCGH affy AnnotationDbi DNAcopy GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges lattice limma mclust org_Hs_eg_db plyr shiny TxDb_Hsapiens_UCSC_hg18_knownGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; - rDGIdb = derive2 { name="rDGIdb"; version="1.7.0"; sha256="12c3ly2x1wc9ry514vzks20drv8q1r19sflhpnwhbc00lmh13s1k"; depends=[httr jsonlite]; }; + rDGIdb = derive2 { name="rDGIdb"; version="1.7.1"; sha256="195z5zifd48sq96rx9ayijfpqbrs5rygjsgjm42h4zylm2niasxi"; depends=[httr jsonlite]; }; rGADEM = derive2 { name="rGADEM"; version="2.29.0"; sha256="1bqzmawhz1m00zcbnvznxzvak5f1b65xalr7sgas2sbrd77lvrhr"; depends=[Biostrings BSgenome IRanges seqLogo]; }; - rGREAT = derive2 { name="rGREAT"; version="1.13.2"; sha256="18cfmvcmk60shrg2pd2qwi1s5679sbrv846vac2py29f6c7gq5zl"; depends=[GenomicRanges GetoptLong IRanges RCurl rjson]; }; + rGREAT = derive2 { name="rGREAT"; version="1.13.3"; sha256="0fkcv2nz674i66yd3x34ba3897sdq96c1cns2kj7hjnv92l88qv3"; depends=[GenomicRanges GetoptLong IRanges RCurl rjson]; }; rHVDM = derive2 { name="rHVDM"; version="1.47.0"; sha256="1y8dkws06j7jh6rnlq3y91bn5wy8fn2ha224mmvx4qchp6y9xcxd"; depends=[affy Biobase minpack_lm R2HTML]; }; rMAT = derive2 { name="rMAT"; version="3.31.0"; sha256="0d2hn2jjs6c5xjwf6w0m9v53bb9mfpqvmms5vnzhwh6z3jankavm"; depends=[affxparser Biobase BiocGenerics IRanges]; }; rRDP = derive2 { name="rRDP"; version="1.15.1"; sha256="0m00070c87za48a4in8bqzb3l77177jqys2ya6wv6xylmfig899j"; depends=[Biostrings]; }; @@ -1372,102 +1461,106 @@ in with self; { rTANDEM = derive2 { name="rTANDEM"; version="1.21.0"; sha256="1n7yaycgh5822j119si8i66yn0asg1mz9a9g7idiyvj8gpq54fv5"; depends=[data_table Rcpp XML]; }; rTRM = derive2 { name="rTRM"; version="1.19.0"; sha256="1x8gbrn4b80v52isxg8a5rhkwijnlx649xyipnj206ky6ihzd3hc"; depends=[AnnotationDbi DBI igraph RSQLite]; }; rTRMui = derive2 { name="rTRMui"; version="1.19.0"; sha256="0gw5yx609nzk8r8qc7q9zgkfs32s79d8v1zpw2njcb5d6figs7b1"; depends=[MotifDb org_Hs_eg_db org_Mm_eg_db rTRM shiny]; }; - rWikiPathways = derive2 { name="rWikiPathways"; version="1.1.0"; sha256="0vcqrcg90npn3rmwkywnf0qnjwxw491mn0xrski70yyij2lylckg"; depends=[caTools httr RJSONIO]; }; + rWikiPathways = derive2 { name="rWikiPathways"; version="1.1.7"; sha256="180pfczj66sm1a7g7r4ykl0qv8bncq7gqp0vf6hr39jmi985shin"; depends=[caTools httr RJSONIO]; }; rain = derive2 { name="rain"; version="1.15.0"; sha256="0zrxh7bmc9x9rh6zbb0zmv3nvz6l7hqq21h4gh3rzzyjy79vw3aj"; depends=[gmp multtest]; }; rama = derive2 { name="rama"; version="1.55.0"; sha256="0kmp25yw86vqxf43br2j75svvaprz97s5nvnxxjxbjwiigbjla7h"; depends=[]; }; - ramwas = derive2 { name="ramwas"; version="1.5.0"; sha256="0g794y9xawkrfcylasjjv123rlsz1yfrdl89nrr4i99jfw7innw2"; depends=[BiocGenerics biomaRt Biostrings digest filematrix GenomicAlignments glmnet KernSmooth Rsamtools]; }; + ramwas = derive2 { name="ramwas"; version="1.5.1"; sha256="1ixis62wpg0mzrzirgyfmp3k4kglsnw0vhgd1n4mvwa3v49vlbgi"; depends=[BiocGenerics biomaRt Biostrings digest filematrix GenomicAlignments glmnet KernSmooth Rsamtools]; }; randPack = derive2 { name="randPack"; version="1.27.0"; sha256="0s7460iz01vmkf4a8g3vn6hrfx94bp5mihfyjkcv46nd9p3k6af5"; depends=[Biobase]; }; rbsurv = derive2 { name="rbsurv"; version="2.39.0"; sha256="08lh9hn97sc0rx9vmkd977kpijs6gqa6r89my7afsvmkm8v7n7ls"; depends=[Biobase survival]; }; - rcellminer = derive2 { name="rcellminer"; version="2.3.0"; sha256="0rm5azbpyfsdaqxmip7wyw8f5apwac8s6n6cm0sqdwwsslm5dsl4"; depends=[Biobase fingerprint ggplot2 gplots rcdk rcellminerData shiny stringr]; }; - readat = derive2 { name="readat"; version="1.7.0"; sha256="186hx7r5gvybvp1f6yzpi515b7hsv3a6il02hwpr8y1xdx3408nv"; depends=[assertive_base assertive_files assertive_numbers assertive_properties assertive_sets assertive_types Biobase data_table dplyr magrittr openxlsx pathological reshape2 stringi SummarizedExperiment testthat tidyr]; }; + rcellminer = derive2 { name="rcellminer"; version="2.3.2"; sha256="0fmg98pcv20gx5c4cbcdcs2cd1a84sg29xld5c7sa76i60ajy6ij"; depends=[Biobase fingerprint ggplot2 gplots rcdk rcellminerData shiny stringr]; }; + readat = derive2 { name="readat"; version="1.7.2"; sha256="0wskar887f6hyrp7p69z50kilwz0kb2d1f6rllbkgrchlh3zn53g"; depends=[assertive_base assertive_files assertive_numbers assertive_properties assertive_sets assertive_types Biobase data_table dplyr magrittr openxlsx pathological reshape2 stringi SummarizedExperiment testthat tidyr]; }; reb = derive2 { name="reb"; version="1.59.0"; sha256="0sdlhx64sh55waxj47hz9kfb6bvxrw4ycyzj5cycr1w3sk2idszc"; depends=[Biobase idiogram]; }; - recount = derive2 { name="recount"; version="1.7.2"; sha256="17cymdrkr9aiszv98qfsy7das1ain2g0g8q4f8ik7bk868ahsaj2"; depends=[BiocParallel derfinder downloader GenomeInfoDb GenomicRanges GEOquery IRanges RCurl rentrez rtracklayer S4Vectors SummarizedExperiment]; }; - recoup = derive2 { name="recoup"; version="1.9.0"; sha256="0z13mj7b5hywp5mbk0faq01k7d1mpnz2b9633h75hkh04w5260n9"; depends=[BiocGenerics biomaRt circlize ComplexHeatmap GenomicAlignments GenomicRanges ggplot2 plyr rtracklayer]; }; - regionReport = derive2 { name="regionReport"; version="1.15.1"; sha256="12mbpblgg0lf3kixi1isx92jkxxcnifhwq03ipgigrkd0iv9s7q6"; depends=[BiocStyle DEFormats derfinder DESeq2 GenomeInfoDb GenomicRanges knitcitations knitr knitrBootstrap RefManageR rmarkdown S4Vectors SummarizedExperiment]; }; - regioneR = derive2 { name="regioneR"; version="1.13.0"; sha256="0iy118hy66d7wina49sh7xwi0akx9hp7k98gwfjc0bpwdj7gs1h9"; depends=[BSgenome GenomeInfoDb GenomicRanges IRanges memoise rtracklayer S4Vectors]; }; - regsplice = derive2 { name="regsplice"; version="1.7.0"; sha256="1gl5isfrqi0xyb4mdv7j6sb8ah4mzmwkaal1kcphjsrj8g46ba80"; depends=[edgeR glmnet limma pbapply S4Vectors SummarizedExperiment]; }; - restfulSE = derive2 { name="restfulSE"; version="1.3.1"; sha256="02jq9gjf7z70ny1bmywx39igxm29nkmc6qv1acy81gxxpsr8naih"; depends=[AnnotationDbi AnnotationHub bigrquery Biobase DBI DelayedArray dplyr ExperimentHub GO_db magrittr reshape2 rhdf5client rlang S4Vectors SummarizedExperiment]; }; + recount = derive2 { name="recount"; version="1.7.6"; sha256="03gk0h8aqzky7q1jgmn4f27cm18602m5nqbql9nyfxpbdpy9gdwb"; depends=[BiocParallel derfinder downloader GenomeInfoDb GenomicRanges GEOquery IRanges RCurl rentrez rtracklayer S4Vectors SummarizedExperiment]; }; + recoup = derive2 { name="recoup"; version="1.9.2"; sha256="0c6zd42xr7068yfnsag8xfjix83m3wa3s8fsc2dv5fz2gnmhbfm2"; depends=[BiocGenerics biomaRt circlize ComplexHeatmap GenomicAlignments GenomicRanges ggplot2 plyr rtracklayer]; }; + regionReport = derive2 { name="regionReport"; version="1.15.5"; sha256="02fhvjx5pj5hb3bdmm417rdjd8bzx81icdd8yqc4q7layhjrqb5q"; depends=[BiocStyle DEFormats derfinder DESeq2 GenomeInfoDb GenomicRanges knitcitations knitr knitrBootstrap RefManageR rmarkdown S4Vectors SummarizedExperiment]; }; + regioneR = derive2 { name="regioneR"; version="1.13.3"; sha256="1rmh4xq596yb8kd411j5h02b6g2rflkwy9a1g38djj7lhzihy2im"; depends=[Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges memoise rtracklayer S4Vectors]; }; + regsplice = derive2 { name="regsplice"; version="1.7.1"; sha256="07g7jhwsb6yqhjvapr7kyqd8cwvn5jq9nrrf1ywifbf54x0kgzm1"; depends=[edgeR glmnet limma pbapply S4Vectors SummarizedExperiment]; }; + restfulSE = derive2 { name="restfulSE"; version="1.3.23"; sha256="1cpxkqnffmhj6js1a4y3k85jmrcciw1sih35akj8v6rpv4fsy7xa"; depends=[AnnotationDbi AnnotationHub bigrquery Biobase DBI DelayedArray dplyr ExperimentHub GO_db magrittr reshape2 rhdf5client rlang S4Vectors SummarizedExperiment]; }; + rexposome = derive2 { name="rexposome"; version="1.3.4"; sha256="0w5w4agdphrv935y3415hcrbgsxw27yk7h1xrjl5vk1ymkrj767z"; depends=[Biobase circlize corrplot FactoMineR ggplot2 ggrepel glmnet gplots gridExtra gtools Hmisc imputeLCMD lme4 lsr mice pryr reshape2 S4Vectors scales scatterplot3d stringr]; }; rfPred = derive2 { name="rfPred"; version="1.19.0"; sha256="0xnb68s8iw01cnxma5iqyfki4f30i4if7kxc9p0i8w1nv3jf28xj"; depends=[data_table GenomicRanges IRanges Rsamtools]; }; rgsepd = derive2 { name="rgsepd"; version="1.13.0"; sha256="128dqx7qzs9pf7ffxn94g8krkyryhcvj4wq9m1mdfj024yl4s04i"; depends=[AnnotationDbi biomaRt DESeq2 GO_db goseq gplots hash org_Hs_eg_db SummarizedExperiment]; }; - rhdf5 = derive2 { name="rhdf5"; version="2.25.4"; sha256="129jzsqfswv6vhvfypqm9wcsnm94blq2zmjcp78c1vcjxc2i4li6"; depends=[Rhdf5lib]; }; - rhdf5client = derive2 { name="rhdf5client"; version="1.3.3"; sha256="0iyhqsnfr7c9z7zk80i6i15f7sqkb28nakjxccldhn0g8xkaavq9"; depends=[DelayedArray httr rjson S4Vectors]; }; + rhdf5 = derive2 { name="rhdf5"; version="2.25.11"; sha256="02xa4pc743k7q523p8x9njzqk8j0zv5kmprx5srnmrr1r1m4am8g"; depends=[Rhdf5lib]; }; + rhdf5client = derive2 { name="rhdf5client"; version="1.3.13"; sha256="0pcppacx3n1pr67amd5y7r25sm2w9k8vhxn8k8v66ndp08i0pd9b"; depends=[DelayedArray httr R6 rjson S4Vectors]; }; riboSeqR = derive2 { name="riboSeqR"; version="1.15.0"; sha256="0cwf51cish38slfv3cqfn4rqjs8k9wwwph0n4w7wd4dh7c9p2rmn"; depends=[abind baySeq GenomeInfoDb GenomicRanges IRanges Rsamtools seqLogo]; }; rnaSeqMap = derive2 { name="rnaSeqMap"; version="2.39.0"; sha256="07q9dblld6ns943ppjdl1xlbzhg3yvxci8v1x2kbifqwlvv2lzs6"; depends=[Biobase DBI DESeq edgeR GenomicAlignments GenomicRanges IRanges Rsamtools]; }; rnaseqcomp = derive2 { name="rnaseqcomp"; version="1.11.0"; sha256="0r1n74x5xbp264ap9xsndiich89cv2140whi6ax179dpjs57ikaa"; depends=[RColorBrewer]; }; roar = derive2 { name="roar"; version="1.17.0"; sha256="09wmsfn4lqzj8ffqlf5z9npx4v0y3bpvxrm6b5rggc3prlq9m4qb"; depends=[BiocGenerics GenomeInfoDb GenomicAlignments GenomicRanges IRanges rtracklayer S4Vectors SummarizedExperiment]; }; - rols = derive2 { name="rols"; version="2.9.1"; sha256="0lzwl32zd61cj57ndxs9y74bclfpwl7s590a81cj99kidz6sx0c3"; depends=[Biobase BiocGenerics httr jsonlite progress]; }; - ropls = derive2 { name="ropls"; version="1.13.6"; sha256="1gbjnpm5phimfgg2qfav04wc4aabvinj8gxirw9f6gp1wra0kbyr"; depends=[Biobase]; }; - rpx = derive2 { name="rpx"; version="1.17.0"; sha256="0h5s2dwnpn7qqk5wk7128agdh9av9jzxhix4xrl0nhdd3jzi202y"; depends=[RCurl xml2]; }; - rqt = derive2 { name="rqt"; version="1.7.0"; sha256="1iai2g1k7ybdlmw4r9k2zqdqq58ayggzs0gzdrn1bxmgp83v87fv"; depends=[car CompQuadForm glmnet Matrix metap pls ropls RUnit SummarizedExperiment]; }; + rols = derive2 { name="rols"; version="2.9.4"; sha256="15qvqv3gi33ihdh0nlqqrv7raqs8g5hskaz2gk4pw0v24bzh1579"; depends=[Biobase BiocGenerics httr jsonlite progress]; }; + ropls = derive2 { name="ropls"; version="1.13.8"; sha256="1ryxjnpd7q0pwi8sd2ha3jlfwkk6v4cqz2751bv952k8c9mldna7"; depends=[Biobase]; }; + rpx = derive2 { name="rpx"; version="1.17.2"; sha256="0h0y31bi5f9z64ilcsgx1bj52qwfh1rv9ar00v3xkgx0zax5aw2m"; depends=[RCurl xml2]; }; + rqt = derive2 { name="rqt"; version="1.7.2"; sha256="1nnacv0vgf9y3abrph04hmibjm08bmhi32ik7vrbr5pv5bbmdhrn"; depends=[car CompQuadForm glmnet Matrix metap pls ropls RUnit SummarizedExperiment]; }; rqubic = derive2 { name="rqubic"; version="1.27.0"; sha256="06pp8ha9va9hkr5s7dmw6xsxs55sv0cn9vwysja0n4hdbbh5fx9v"; depends=[biclust Biobase BiocGenerics]; }; rsbml = derive2 { name="rsbml"; version="2.39.0"; sha256="0ch87r9v7yxxqab81n99silsi6am7vwf1fzg43jg8x5726yz4pip"; depends=[BiocGenerics graph]; }; - rtracklayer = derive2 { name="rtracklayer"; version="1.41.3"; sha256="1z8g303smfg3c3rax3c9fx4017fy9ch5sbvqsiincykigjsrn21b"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicRanges IRanges RCurl Rsamtools S4Vectors XML XVector zlibbioc]; }; - runibic = derive2 { name="runibic"; version="1.3.1"; sha256="1l1rywk4lhgssmysd8998gd1wr5ms08s2s8skq2ss6qcxp1qrnvi"; depends=[biclust Rcpp SummarizedExperiment testthat]; }; + rtracklayer = derive2 { name="rtracklayer"; version="1.41.8"; sha256="029qzy68il0mn7bkjhqdainl93a6v6k044ihgg5mndyhhhadjv03"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicRanges IRanges RCurl Rsamtools S4Vectors XML XVector zlibbioc]; }; + runibic = derive2 { name="runibic"; version="1.3.3"; sha256="038afzgh06f908m1rlr0v58vfgm97q3shd174772k9rllzqr0q0j"; depends=[biclust Rcpp SummarizedExperiment testthat]; }; sRAP = derive2 { name="sRAP"; version="1.21.0"; sha256="1mfailybmpa5ikc372qcfp57rnsksv6kn4x48bf6c0g5vln2kpjh"; depends=[gplots pls qvalue ROCR WriteXLS]; }; sSeq = derive2 { name="sSeq"; version="1.19.0"; sha256="19d7xj3bqvvlxl23i08ab8ja53342nzi658a1f7xzf7khgp58fg9"; depends=[caTools RColorBrewer]; }; safe = derive2 { name="safe"; version="3.21.0"; sha256="12h9d3dradnnkmhxz94d1b191q6xvx74nvp9y9y46yla7rxqpzma"; depends=[AnnotationDbi Biobase SparseM]; }; sagenhaft = derive2 { name="sagenhaft"; version="1.51.0"; sha256="0mvj275rrqvz53fsv48c5gd3lzxmwh036353bmw7jswb1mrrv5qz"; depends=[SparseM]; }; - samExploreR = derive2 { name="samExploreR"; version="1.5.0"; sha256="1gnlrkvyzw36m3da67vz7g8cfrrk4lg0yg2b9svhf3rjhfq6sjvv"; depends=[edgeR ggplot2 RNAseqData_HNRNPC_bam_chr14 Rsubread]; }; - sampleClassifier = derive2 { name="sampleClassifier"; version="1.5.0"; sha256="08lr8b0dg489mfiljnpqdryflim8m902b66fl8qkkn5hm842dm22"; depends=[annotate e1071 ggplot2 MGFM MGFR]; }; + samExploreR = derive2 { name="samExploreR"; version="1.5.1"; sha256="1qzi9vn2hj9ph23mf8v0m6m587qisqvp0fmvkavxm8v3y07mcnpk"; depends=[edgeR ggplot2 RNAseqData_HNRNPC_bam_chr14 Rsubread]; }; + sampleClassifier = derive2 { name="sampleClassifier"; version="1.5.1"; sha256="1a4y3nnibjkv51i0m1qpj8mb675r9gz9zdpyra18c19ga245bwih"; depends=[annotate e1071 ggplot2 MGFM MGFR]; }; sangerseqR = derive2 { name="sangerseqR"; version="1.17.0"; sha256="02v0khp8dksvj8h0p3py5cdxwgbla9hv60mrj6ay2d6yyv2w0vz6"; depends=[Biostrings shiny]; }; sapFinder = derive2 { name="sapFinder"; version="1.19.0"; sha256="0f0k3afijnj0h6bh46cnkm3gajdsvngamcw2q5xbdrafidrk6npm"; depends=[pheatmap Rcpp rTANDEM]; }; savR = derive2 { name="savR"; version="1.19.0"; sha256="1lzlrpv244pnwmf3347r7l5vwz0cd4hlm9nvlpdlvv8glvf7v4ay"; depends=[ggplot2 gridExtra reshape2 scales XML]; }; scDD = derive2 { name="scDD"; version="1.5.0"; sha256="1s2a4nz3ys4vllk9dphwskqrw2bb9shkqx4bismprn0b7qcmnv9j"; depends=[arm BiocParallel EBSeq fields ggplot2 mclust outliers S4Vectors scran SingleCellExperiment SummarizedExperiment]; }; - scFeatureFilter = derive2 { name="scFeatureFilter"; version="1.1.0"; sha256="0d4rrrk4fdrnrf7rdqwz915sg7m81w0fzfrrnjzpsncpwzkqa1pg"; depends=[dplyr ggplot2 magrittr rlang tibble]; }; - scPipe = derive2 { name="scPipe"; version="1.3.7"; sha256="1gvpkcxjal81r5vh4f16ll9p0nj70iyp8gp5c9rkg2pr0p28ryx3"; depends=[AnnotationDbi BiocGenerics biomaRt GGally ggplot2 MASS mclust org_Hs_eg_db org_Mm_eg_db Rcpp reshape Rhtslib robustbase S4Vectors scales SingleCellExperiment SummarizedExperiment testthat zlibbioc]; }; - scater = derive2 { name="scater"; version="1.9.6"; sha256="0yxw73fvxyvq99lnpwp4j4mf2jy6zkyw934ql2y2avbnyclj4id5"; depends=[beachmat Biobase BiocGenerics data_table DelayedArray DelayedMatrixStats dplyr ggbeeswarm ggplot2 limma Matrix plyr Rcpp reshape2 rhdf5 Rhdf5lib rjson S4Vectors SingleCellExperiment SummarizedExperiment tximport viridis]; }; + scFeatureFilter = derive2 { name="scFeatureFilter"; version="1.1.1"; sha256="0xsbyqlflmphrdc0rqbgjyc93fmm2b747wn2lswq24r6g87084cs"; depends=[dplyr ggplot2 magrittr rlang tibble]; }; + scPipe = derive2 { name="scPipe"; version="1.3.8"; sha256="0c250q77rwcmns0m5px7485axbrflb7xmkrw58fxyzn58i13y3bc"; depends=[AnnotationDbi BiocGenerics biomaRt GGally ggplot2 MASS mclust org_Hs_eg_db org_Mm_eg_db Rcpp reshape Rhtslib robustbase S4Vectors scales SingleCellExperiment SummarizedExperiment testthat zlibbioc]; }; + scater = derive2 { name="scater"; version="1.9.24"; sha256="062afh547brk3jxjxkyapz66agkdyvsn62ppx1n2qcpbhxlpppnd"; depends=[beachmat BiocGenerics BiocParallel DelayedArray DelayedMatrixStats dplyr ggbeeswarm ggplot2 Matrix plyr Rcpp reshape2 Rhdf5lib S4Vectors SingleCellExperiment SummarizedExperiment viridis]; }; scde = derive2 { name="scde"; version="2.9.0"; sha256="1zmhbjdy9v2v11q261l7gwjm77qpiyqdskgbkcaxf7a65wbzs90r"; depends=[BiocParallel Cairo edgeR extRemes flexmix MASS mgcv nnet pcaMethods quantreg RColorBrewer Rcpp RcppArmadillo rjson RMTstat Rook]; }; scfind = derive2 { name="scfind"; version="1.3.0"; sha256="08xkvmjd6p6vsnfk7a5y4586b9r3ap7l9ig0g6cd6cj8pjhvf51b"; depends=[bit dplyr hash Rcpp reshape2 SingleCellExperiment SummarizedExperiment]; }; scmap = derive2 { name="scmap"; version="1.3.0"; sha256="0pnflc49ysq7sxcg0ddcapi65vfjq3zl9pnz119hjr6avp8sjmhy"; depends=[Biobase BiocGenerics dplyr e1071 ggplot2 googleVis matrixStats proxy randomForest Rcpp RcppArmadillo reshape2 S4Vectors SingleCellExperiment SummarizedExperiment]; }; - scone = derive2 { name="scone"; version="1.5.0"; sha256="0n49j4z48zfrrj7a9nv538vyi5611w5r68rw9w99c28k2n6lvril"; depends=[BiocParallel boot class cluster compositions diptest edgeR fpc gplots hexbin limma matrixStats mixtools rARPACK RColorBrewer rhdf5 RUVSeq SummarizedExperiment]; }; + scmeth = derive2 { name="scmeth"; version="1.1.8"; sha256="1fkf2pxbnhl992cql5nd73qq0kqzhvhl8g7rjfyx2zlfnb0a2m22"; depends=[AnnotationHub annotatr Biostrings BSgenome bsseq DelayedArray DT GenomeInfoDb GenomicRanges HDF5Array knitr reshape2 rmarkdown SummarizedExperiment]; }; + scone = derive2 { name="scone"; version="1.5.1"; sha256="0sqnwq34ixlpaq8zrpqjwvpfx985yzyc7wdymfkwfy2ysclrcbn6"; depends=[aroma_light BiocParallel boot class cluster compositions diptest edgeR fpc gplots hexbin limma matrixStats mixtools rARPACK RColorBrewer rhdf5 RUVSeq SummarizedExperiment]; }; scoreInvHap = derive2 { name="scoreInvHap"; version="1.3.1"; sha256="1nysi4blc9rxfsq4kwyyq9nbzdww7xfwgrcw8czvnfca59dbfgdq"; depends=[BiocParallel Biostrings GenomicRanges snpStats SummarizedExperiment VariantAnnotation]; }; - scran = derive2 { name="scran"; version="1.9.10"; sha256="1c55i0iq6dfhxdmnps440d0i1lsidj2wx0v2a476lks4hi32bwsf"; depends=[beachmat BiocGenerics BiocParallel DelayedArray DelayedMatrixStats dynamicTreeCut edgeR igraph kmknn limma Matrix Rcpp Rhdf5lib S4Vectors scater SingleCellExperiment statmod SummarizedExperiment]; }; + scran = derive2 { name="scran"; version="1.9.39"; sha256="174s3jymh8w1gbaq60m4lwhk038bfzrwva2a8xry3ampns818a6b"; depends=[beachmat BiocGenerics BiocNeighbors BiocParallel DelayedArray DelayedMatrixStats dynamicTreeCut edgeR igraph limma Matrix Rcpp Rhdf5lib S4Vectors scater SingleCellExperiment statmod SummarizedExperiment]; }; + scruff = derive2 { name="scruff"; version="0.99.39"; sha256="1za3d79p6cm19m3xqwbfgvrnfhjrr3j54s5vqhaaxxxvj9xbpv06"; depends=[AnnotationDbi BiocGenerics BiocParallel Biostrings data_table GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 ggthemes plyr refGenome Rsamtools S4Vectors scales ShortRead SingleCellExperiment stringdist SummarizedExperiment]; }; scsR = derive2 { name="scsR"; version="1.17.0"; sha256="1ppw53nl05rfs7jkgr464pa24yrczlvh7yfgmn5apd3yxbmf9i9w"; depends=[BiocGenerics Biostrings ggplot2 hash IRanges plyr RColorBrewer sqldf STRINGdb]; }; - segmentSeq = derive2 { name="segmentSeq"; version="2.15.0"; sha256="07cm7314vjhsara5ngs3j0gi7fjbdvn51r6s7ifxm6vij43ivpqs"; depends=[abind baySeq GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors ShortRead]; }; - semisup = derive2 { name="semisup"; version="1.5.1"; sha256="170x6s5q1lja64p4ldpravlaal8vs7rzqk8lyvrydsg02ss7vj7h"; depends=[SummarizedExperiment VGAM]; }; - seq2pathway = derive2 { name="seq2pathway"; version="1.13.0"; sha256="03gbim70cnym2ga6zynj67r9ad1j4hrgydzzsi8r1nykkmjlk5lj"; depends=[biomaRt GenomicRanges GSA nnet seq2pathway_data WGCNA]; }; - seqCAT = derive2 { name="seqCAT"; version="1.3.3"; sha256="0s3r550w41x5kdzqjnk2ypp2fn3sd8qn8b85s4h8rdzyc8brp0d8"; depends=[dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges lazyeval S4Vectors scales SummarizedExperiment tidyr VariantAnnotation]; }; + segmentSeq = derive2 { name="segmentSeq"; version="2.15.1"; sha256="10qjyzzi4vr43p66rgpxkm5hlgfpg6s76g19vdyzs8lh0mn4shfw"; depends=[abind baySeq GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors ShortRead]; }; + semisup = derive2 { name="semisup"; version="1.5.3"; sha256="13xmxl1915hk000l2kg120h4cqyw1372j2b92vfz5mn45ngmg99k"; depends=[SummarizedExperiment VGAM]; }; + seq2pathway = derive2 { name="seq2pathway"; version="1.13.2"; sha256="15fvc4dqn7adl3jsphin60krbm29mbm3w8000plcmk8n5bxdxqvj"; depends=[biomaRt GenomicRanges GSA nnet seq2pathway_data WGCNA]; }; + seqCAT = derive2 { name="seqCAT"; version="1.3.7"; sha256="10c5y3d63zk6zsyjx38srw73xj03nk7apa2p81z91jwwmva2ab2m"; depends=[dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges lazyeval S4Vectors scales SummarizedExperiment tidyr VariantAnnotation]; }; seqCNA = derive2 { name="seqCNA"; version="1.27.0"; sha256="03zxkdcvxgjjhciv1w9l9gdj21ljqrw3c9cgkf2pqp3jk0swpaa7"; depends=[adehabitatLT doSNOW GLAD seqCNA_annot]; }; seqLogo = derive2 { name="seqLogo"; version="1.47.0"; sha256="1hqfgxd7yvh7lm5q3qfhlkiy0pq5ffxls317miivsgid28shwmwk"; depends=[]; }; seqPattern = derive2 { name="seqPattern"; version="1.13.0"; sha256="1xm7f3z29ahyiiy8586yfy5m4cqalws8hsyp8yc9xybw0mwdpyhg"; depends=[Biostrings GenomicRanges IRanges KernSmooth plotrix]; }; seqTools = derive2 { name="seqTools"; version="1.15.0"; sha256="0qnj79xhgflhjcrd2n61fmx099q83iil8hy6pq7jzhnzhg4572pj"; depends=[zlibbioc]; }; seqbias = derive2 { name="seqbias"; version="1.29.0"; sha256="1lv6wcqzlr40jmwac9s07ixx9vyikkc5a8f5wjmip9gglyy7m5f4"; depends=[Biostrings GenomicRanges Rsamtools zlibbioc]; }; seqcombo = derive2 { name="seqcombo"; version="1.3.0"; sha256="1l4n2472kr4kimf4aq8v5whqwjpzwbkisfrf74wjljdj43903dr2"; depends=[Biostrings cowplot dplyr ggplot2 igraph magrittr rvcheck]; }; - seqplots = derive2 { name="seqplots"; version="1.19.0"; sha256="1qx7b2jzhprncgff4n88w7kq10hp98a6bcky0lq4z8rjf3ksaph7"; depends=[Biostrings BSgenome class DBI digest DT fields GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridExtra IRanges jsonlite kohonen plotrix RColorBrewer reshape2 Rsamtools RSQLite rtracklayer S4Vectors shiny]; }; - seqsetvis = derive2 { name="seqsetvis"; version="1.1.2"; sha256="0az4s9v69b57fnisc5ln827da7cyhx16wwzh5cx8qqhkffzn323s"; depends=[data_table eulerr GenomicRanges ggplot2 IRanges limma png RColorBrewer Rsamtools rtracklayer S4Vectors]; }; - sesame = derive2 { name="sesame"; version="0.99.3"; sha256="1dz1jx4cmpbis0h3mmk5p7h6ybprsrnvdbzcv6kj0h0q31al2rg9"; depends=[DNAcopy GenomicRanges ggplot2 illuminaio IRanges MASS preprocessCore R6 randomForest sesameData wheatmap]; }; - sevenC = derive2 { name="sevenC"; version="1.1.0"; sha256="05h05y7nkq73igsv54znawrzav7ijvrzwqsbpw8di43fah1klpg7"; depends=[BiocGenerics boot data_table GenomeInfoDb GenomicRanges InteractionSet IRanges purrr readr rtracklayer S4Vectors]; }; - sevenbridges = derive2 { name="sevenbridges"; version="1.11.0"; sha256="1c3mj8k5fscj4hcg7rm12zjfp9hbwlp9k83hi8ijq55iw66jp399"; depends=[curl docopt dplyr httr jsonlite miniUI objectProperties rstudioapi S4Vectors shiny stringr uuid yaml]; }; - shinyMethyl = derive2 { name="shinyMethyl"; version="1.17.0"; sha256="0cs3s08mijpcz598d07as3yl0fcw3x5q6q1lxmq29x36kmfz6yrg"; depends=[BiocGenerics IlluminaHumanMethylation450kmanifest matrixStats minfi RColorBrewer shiny]; }; + seqplots = derive2 { name="seqplots"; version="1.19.3"; sha256="0drjn6l80xqy3lij4qzg48chrwi0sjhv0xnqgg9m6qyq9xb7hy5l"; depends=[BiocManager Biostrings BSgenome class DBI digest DT fields GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridExtra IRanges jsonlite kohonen plotrix RColorBrewer reshape2 Rsamtools RSQLite rtracklayer S4Vectors shiny]; }; + seqsetvis = derive2 { name="seqsetvis"; version="1.1.7"; sha256="01yd5lbkad79s274yc0byfvi4pp51b8ikrdnrza9r6jffaalzi60"; depends=[data_table eulerr GenomicRanges ggplot2 IRanges limma png RColorBrewer Rsamtools rtracklayer S4Vectors]; }; + sesame = derive2 { name="sesame"; version="0.99.7"; sha256="19l3cl5202aysf8bahhb4sm53q3x2jlz424ykw9zdf0ab9m3zbnc"; depends=[DNAcopy GenomicRanges ggplot2 illuminaio IRanges MASS preprocessCore R6 randomForest S4Vectors sesameData wheatmap]; }; + sevenC = derive2 { name="sevenC"; version="1.1.4"; sha256="16x95kb8264r5z55r635lyy13i37jsnyghmn27mw4wj8acdgv6gb"; depends=[BiocGenerics boot data_table GenomeInfoDb GenomicRanges InteractionSet IRanges purrr readr rtracklayer S4Vectors]; }; + sevenbridges = derive2 { name="sevenbridges"; version="1.11.5"; sha256="07pndfkcx4ixh5sk2hq64r5xzz2b6h26km50dk4pizj03lpcgalr"; depends=[curl docopt dplyr httr jsonlite miniUI objectProperties rstudioapi S4Vectors shiny stringr uuid yaml]; }; + shinyMethyl = derive2 { name="shinyMethyl"; version="1.17.1"; sha256="18s9m1yxqvpzqaq87c09k5wvjxpxijz6b9gi7nr1b4jxfglkxrdl"; depends=[BiocGenerics IlluminaHumanMethylation450kmanifest matrixStats minfi RColorBrewer shiny]; }; shinyTANDEM = derive2 { name="shinyTANDEM"; version="1.19.0"; sha256="0yvf4rxpki7xb7f7yckxrm7ycsx2clqn13smc2m7ihdyvg5kw941"; depends=[mixtools rTANDEM shiny xtable]; }; - sigFeature = derive2 { name="sigFeature"; version="0.99.4"; sha256="011drdrq1pj37jbp8289rws1nmhbyivghbfpkirj6g4wc6pnpghn"; depends=[BiocParallel biocViews e1071 Matrix nlme openxlsx pheatmap RColorBrewer SparseM SummarizedExperiment]; }; + sigFeature = derive2 { name="sigFeature"; version="0.99.5"; sha256="08fs7pa4r4gbsg8j1f630lz9b0p4z4cq9r54akv0ix5q1mi71n2p"; depends=[BiocParallel biocViews e1071 Matrix nlme openxlsx pheatmap RColorBrewer SparseM SummarizedExperiment]; }; sigPathway = derive2 { name="sigPathway"; version="1.49.0"; sha256="0fzqf17xqb0f2af9lz392l656naddann4wsxn233d28dajdvw5rx"; depends=[]; }; sigaR = derive2 { name="sigaR"; version="1.29.0"; sha256="0lmv6m0rb7pnrqp6gd8klni3vd0rb98xscfx7qb5xpkihqcnya9s"; depends=[Biobase CGHbase corpcor igraph limma marray MASS mvtnorm penalized quadprog snowfall]; }; siggenes = derive2 { name="siggenes"; version="1.55.0"; sha256="1lfw6ny0s76jcypqin49raz1zrbl1rwds3646c8h52rd37c4hdx0"; depends=[Biobase multtest]; }; - sights = derive2 { name="sights"; version="1.7.0"; sha256="0ygld23zpqqa7xalbq1kyf6x03kpqbmicr4hrysjk54h3r5pv56y"; depends=[ggplot2 lattice MASS qvalue reshape2]; }; - signeR = derive2 { name="signeR"; version="1.7.1"; sha256="1xmz6b33n0idby69739mm8frv4l95g8rsdcp98dg6fhpf2s49ky3"; depends=[BiocGenerics Biostrings class GenomicRanges nloptr NMF PMCMR Rcpp RcppArmadillo VariantAnnotation]; }; - signet = derive2 { name="signet"; version="1.1.0"; sha256="1rdmq4x0xf13hl54f2nbnckz8nci9391g6l00zznv1vzykp6awdm"; depends=[graph igraph RBGL]; }; + sights = derive2 { name="sights"; version="1.7.1"; sha256="05zny8xlsxzyp9bbv4jlgrpkmy0ppzqf97809ic6myfch547x7gp"; depends=[ggplot2 lattice MASS qvalue reshape2]; }; + signeR = derive2 { name="signeR"; version="1.7.2"; sha256="1ranfb4kik0k6cpi8zhsnqhvccrlizrkrijcp1yzhhaq5w33xj5b"; depends=[BiocGenerics Biostrings class GenomicRanges nloptr NMF PMCMR Rcpp RcppArmadillo VariantAnnotation]; }; + signet = derive2 { name="signet"; version="1.1.1"; sha256="0fcrwsimxx9j7m5x7civv9qrlcgnn6dyb7kcblsfxw6lidqhv59n"; depends=[graph igraph RBGL]; }; sigsquared = derive2 { name="sigsquared"; version="1.13.0"; sha256="11bjd0bq2kf4inkybx7hkf970ma8rhwvagrlwxnxafh8nzw5amn8"; depends=[Biobase survival]; }; similaRpeak = derive2 { name="similaRpeak"; version="1.13.0"; sha256="1lgs161banaxsi22ydgmw1jpf04h7js92sqzir5v7ms0h12nym15"; depends=[R6]; }; simpleaffy = derive2 { name="simpleaffy"; version="2.57.0"; sha256="0yc44svjmh2vr1z3a77nvmas7kfcl0p6rjygq6ax477rvzldw7rq"; depends=[affy Biobase BiocGenerics gcrma genefilter]; }; - simulatorZ = derive2 { name="simulatorZ"; version="1.15.0"; sha256="1x90bakarcp01h72536yr0ks2w3a64l0lwvdvka8whwm72sh8255"; depends=[Biobase BiocGenerics CoxBoost gbm GenomicRanges Hmisc IRanges S4Vectors SummarizedExperiment survival]; }; - sincell = derive2 { name="sincell"; version="1.13.0"; sha256="0mqm5qrb5nrcpigpvkjvhs0fh386x9lm6p5ns1vl38gvdq9yqvi3"; depends=[cluster entropy fastICA fields ggplot2 igraph MASS proxy Rcpp reshape2 Rtsne scatterplot3d statmod TSP]; }; - singleCellTK = derive2 { name="singleCellTK"; version="1.1.5"; sha256="180klrpaq8dz484xpd76aif2n5jyqxi4l0lr969v0yby9hn9jvyq"; depends=[AnnotationDbi ape Biobase circlize cluster colourpicker ComplexHeatmap data_table DelayedArray DESeq2 DT ggplot2 ggtree gridExtra GSVA GSVAdata limma MAST matrixStats multtest plotly RColorBrewer reshape2 Rtsne S4Vectors shiny shinyalert shinyjs SingleCellExperiment SummarizedExperiment sva]; }; - singscore = derive2 { name="singscore"; version="1.1.0"; sha256="1n21cikl874xhbx2c0nd678p53s6gvavih3dz2cbm1l1mprn5gx1"; depends=[Biobase BiocParallel edgeR ggplot2 ggrepel ggsci GSEABase magrittr matrixStats plotly plyr RColorBrewer reshape SummarizedExperiment tidyr]; }; + simulatorZ = derive2 { name="simulatorZ"; version="1.15.1"; sha256="16vzgni41r2jj8g8lbf3hh7r7202j0zq77shdaivrfzas19gaxwc"; depends=[Biobase BiocGenerics CoxBoost gbm GenomicRanges Hmisc SummarizedExperiment survival]; }; + sincell = derive2 { name="sincell"; version="1.13.2"; sha256="1h43wmx7l2sl9ka9lklqxfd35zkjbxvwsza979vxp6c8j8plp03g"; depends=[cluster entropy fastICA fields ggplot2 igraph MASS proxy Rcpp reshape2 Rtsne scatterplot3d statmod TSP]; }; + singleCellTK = derive2 { name="singleCellTK"; version="1.1.26"; sha256="1caw8cyw9f0ky3mj1fsk5lfgb4v0g3ghqb0l32j70q1r1yipdl87"; depends=[AnnotationDbi ape Biobase circlize cluster colourpicker ComplexHeatmap data_table DelayedArray DESeq2 DT enrichR ggplot2 ggtree gridExtra GSVA GSVAdata limma MAST matrixStats multtest plotly RColorBrewer reshape2 Rtsne S4Vectors shiny shinyalert shinycssloaders shinyjs SingleCellExperiment SummarizedExperiment sva]; }; + singscore = derive2 { name="singscore"; version="1.1.1"; sha256="12qqx0xnjza2rlyy1isq8mp28baphmb5yld3av5wvackyn0mwmf7"; depends=[Biobase BiocParallel edgeR ggplot2 ggrepel ggsci GSEABase magrittr matrixStats plotly plyr RColorBrewer reshape SummarizedExperiment tidyr]; }; sizepower = derive2 { name="sizepower"; version="1.51.0"; sha256="0g0f5z0ccypk7m81b2nhrrj86fv1fin96qm8wba2j6ib2wf0p4np"; depends=[]; }; - skewr = derive2 { name="skewr"; version="1.13.1"; sha256="0kgs9xf1609y0na5d9lrl6gj3rrpraagbhnhh9iq3p5b0r1ad92m"; depends=[IlluminaHumanMethylation450kmanifest methylumi minfi mixsmsn RColorBrewer S4Vectors wateRmelon]; }; - slalom = derive2 { name="slalom"; version="1.3.0"; sha256="0b68dq85h3rq0q4lbiv7zv4wg1prf79kh96m06hg9dp6336wy60w"; depends=[BH ggplot2 GSEABase Rcpp RcppArmadillo rsvd SingleCellExperiment SummarizedExperiment]; }; - slingshot = derive2 { name="slingshot"; version="0.99.8"; sha256="0yafvan6py8m4xnhx89hipzv4kbyviivxgn07mp74falci5f9mxw"; depends=[ape clusterExperiment igraph matrixStats princurve rgl SingleCellExperiment SummarizedExperiment]; }; - slinky = derive2 { name="slinky"; version="0.99.18"; sha256="09074wzn1534x76fczfcj6jl94vgv33yq3vhzsv1m342kwqn3mi5"; depends=[curl dplyr foreach httr jsonlite readr rhdf5 SummarizedExperiment tidyr]; }; + skewr = derive2 { name="skewr"; version="1.13.2"; sha256="01ks1ir4sclf2gpwjn0mahxg9iz9iz66axxni190x7gnn076byc4"; depends=[IlluminaHumanMethylation450kmanifest methylumi minfi mixsmsn RColorBrewer S4Vectors wateRmelon]; }; + slalom = derive2 { name="slalom"; version="1.3.1"; sha256="0qjw9zqyxnm6s6glw5j9iaqalnb5rbnrzkmwha2gswq9g6jd803n"; depends=[BH ggplot2 GSEABase Rcpp RcppArmadillo rsvd SingleCellExperiment SummarizedExperiment]; }; + slingshot = derive2 { name="slingshot"; version="0.99.13"; sha256="0w7ii3npq0qgjlszmsmn82sks9rdavhzqvxnn3d7p6c5y5bhz51j"; depends=[ape clusterExperiment igraph matrixStats princurve rgl SingleCellExperiment SummarizedExperiment]; }; + slinky = derive2 { name="slinky"; version="0.99.20"; sha256="1k41hw11wv9lnwkfbfbwdcajfac0sm0c7cspk8iwnkpzkj2qns8c"; depends=[curl dplyr foreach httr jsonlite readr rhdf5 SummarizedExperiment tidyr]; }; snapCGH = derive2 { name="snapCGH"; version="1.51.0"; sha256="0qfkc3sa8inlnviw5wx36nyy71b59xas9rqsmfb4j32nxdhqj64p"; depends=[aCGH cluster DNAcopy GLAD limma tilingArray]; }; snm = derive2 { name="snm"; version="1.29.0"; sha256="052mayih2hdgsgklqhvzmvnvx82ch8q4jvpx8ch5rp4k4g0qlqyj"; depends=[corpcor lme4]; }; snpStats = derive2 { name="snpStats"; version="1.31.0"; sha256="1pxdf5qnibp6szwsllcayqxm9164yl30awfizlv6jmphfkah2i35"; depends=[BiocGenerics Matrix survival zlibbioc]; }; soGGi = derive2 { name="soGGi"; version="1.13.0"; sha256="1xg6yaprmafl861g66j5pymlg1hpjanyibyi3zkrd15avvxw23g9"; depends=[BiocGenerics BiocParallel Biostrings chipseq GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges preprocessCore reshape2 Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; sparseDOSSA = derive2 { name="sparseDOSSA"; version="1.5.0"; sha256="15vpj6v1x84zfy7vblhkm1vsv8hp5qa0fhfgfxbnzc5v28g1g41h"; depends=[MASS MCMCpack optparse tmvtnorm]; }; + sparsenetgls = derive2 { name="sparsenetgls"; version="0.99.7"; sha256="05n4c3gic10hy68kkc8mvh7d51sfbzvr8wr04y160pmlgrjslps4"; depends=[glmnet huge MASS Matrix parcor]; }; specL = derive2 { name="specL"; version="1.15.0"; sha256="1xdfsvq7i9g2pbr0fh0awdwvl3j5ggk1r0n5bxhq7s2p4kjppxc6"; depends=[DBI protViz RSQLite seqinr]; }; spikeLI = derive2 { name="spikeLI"; version="2.41.0"; sha256="1wx57idxn0wbg9mcfxdydcs5fbxmarsvv4hjcp62r5dpp4ymhcsb"; depends=[]; }; spkTools = derive2 { name="spkTools"; version="1.37.0"; sha256="12nwaifk726dr0lh6yf8xaxdmhlybiy88fwc1qypm3kvw6jff6ma"; depends=[Biobase gtools RColorBrewer]; }; - splatter = derive2 { name="splatter"; version="1.5.1"; sha256="0anp2ipvagv2vfhnk0yzldmn9s1z3liqmmqrs23s1yfi9dasdgbs"; depends=[akima BiocGenerics BiocParallel checkmate crayon edgeR fitdistrplus ggplot2 locfit matrixStats scales scater SingleCellExperiment SummarizedExperiment]; }; + splatter = derive2 { name="splatter"; version="1.5.8"; sha256="1bcjrywp49inr59xc01c7iz925wm2jpghx0anj97w08w0z5pn59s"; depends=[akima BiocGenerics BiocParallel checkmate crayon edgeR fitdistrplus ggplot2 locfit matrixStats scales scater SingleCellExperiment SummarizedExperiment]; }; spliceSites = derive2 { name="spliceSites"; version="1.29.0"; sha256="1ivw3zsy5jggacvcby2nx9g9h0r1vvj331qpxxnvzajp9j0187yq"; depends=[Biobase BiocGenerics Biostrings doBy IRanges rbamtools refGenome seqLogo]; }; splicegear = derive2 { name="splicegear"; version="1.53.0"; sha256="15bc3wmz3rz2jipgfj51bj2shr5cy941vnzxnk277yzh5wvz9hvc"; depends=[annotate Biobase XML]; }; splineTimeR = derive2 { name="splineTimeR"; version="1.9.0"; sha256="114c641vyi585yl11czkq5n8gl01q6h8q34g427sj7aspqpf8lkc"; depends=[Biobase FIs GeneNet GSEABase gtools igraph limma longitudinal]; }; @@ -1477,40 +1570,45 @@ in with self; { sscore = derive2 { name="sscore"; version="1.53.0"; sha256="0p6klmcl2zd4i8qmmqj043p310grjmi6b2d610wanas03f0jdv71"; depends=[affy affyio]; }; sscu = derive2 { name="sscu"; version="2.11.0"; sha256="0hnzxyyp82psjddh97kw3g533aiczkji858jl1xqi1kbr02avwc0"; depends=[BiocGenerics Biostrings seqinr]; }; ssize = derive2 { name="ssize"; version="1.55.0"; sha256="061gpsj4dlzxii5ar3rdbc0kpvwby9639l3pk8vfslvcbl290w9f"; depends=[gdata xtable]; }; - ssviz = derive2 { name="ssviz"; version="1.15.0"; sha256="18yz1jy0rl4r7ws21kyl1rjix81jkrqbqhqxgn9qf7zsssynxjf9"; depends=[Biostrings ggplot2 RColorBrewer reshape Rsamtools]; }; + ssviz = derive2 { name="ssviz"; version="1.15.1"; sha256="0q7xzn5xy8xx660711klssbi996218yvi9map04qinb9n60h0bbw"; depends=[Biostrings ggplot2 RColorBrewer reshape Rsamtools]; }; staRank = derive2 { name="staRank"; version="1.23.0"; sha256="1gqvfbs15hdg7fkz6yxjxwn227am7lj372yhiiadgm629bwgcyxi"; depends=[cellHTS2]; }; - stageR = derive2 { name="stageR"; version="1.3.25"; sha256="0gq5j7an4m0npc7vx4p8csiwhsdhx9p48gfjp3gds2jjrlnrpsc0"; depends=[SummarizedExperiment]; }; - statTarget = derive2 { name="statTarget"; version="1.11.0"; sha256="06cwz5mwlc580bj2pqli08a6ia4q68d792jx0ssjhk6ggh58czqp"; depends=[gWidgets2 gWidgets2RGtk2 impute pdist pls plyr randomForest ROC rrcov]; }; + stageR = derive2 { name="stageR"; version="1.3.28"; sha256="1k7by1vds39xyxn3yas181si96v8q8rqxwv34b12ihsb4z7nsxpi"; depends=[SummarizedExperiment]; }; + statTarget = derive2 { name="statTarget"; version="1.11.7"; sha256="06vvha2dp1wf3lbpxxf2p4w1jvicd7fcicc525km7qkw9wp7bl5j"; depends=[impute pdist pls plyr randomForest ROC rrcov]; }; stepNorm = derive2 { name="stepNorm"; version="1.53.0"; sha256="1iq4kv3dj8nr9nqd4nnrndss4ypc87a9pl389ha9q671ifqahaii"; depends=[marray MASS]; }; - subSeq = derive2 { name="subSeq"; version="1.11.0"; sha256="0grwj60ax5i9z3bg04wi73pq9qx5mizldc059ja23f4rkk4nq7vg"; depends=[Biobase data_table digest dplyr ggplot2 magrittr qvalue tidyr]; }; - supraHex = derive2 { name="supraHex"; version="1.19.0"; sha256="0m4plhy7v0rfxr8ysndyqmd1x9nbf2y3hbka5gvs3zmi45wd4rds"; depends=[ape hexbin MASS]; }; - survcomp = derive2 { name="survcomp"; version="1.31.0"; sha256="0r95jgddlvgx61jwsjgdqb2npm4mi19jyrqw2349h3bds6w1r840"; depends=[bootstrap ipred KernSmooth prodlim rmeta SuppDists survival survivalROC]; }; - sva = derive2 { name="sva"; version="3.29.0"; sha256="0xrqhnayir6c3hz7yw35rlscgbv6hp0s798v5qmlgdfk4s2x1sq4"; depends=[BiocParallel genefilter limma matrixStats mgcv]; }; + strandCheckR = derive2 { name="strandCheckR"; version="0.99.15"; sha256="02g18vb3adnk5vd5khpi61whall2vrpj9ghwf7dh43d37q7x3kz9"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridExtra IRanges magrittr reshape2 Rsamtools S4Vectors stringr TxDb_Hsapiens_UCSC_hg38_knownGene]; }; + subSeq = derive2 { name="subSeq"; version="1.11.1"; sha256="1xhfxccbdgzy8k3y41vjr7pi42z7lyffvyrfa6w24dvyqxbg5cb0"; depends=[Biobase data_table digest dplyr ggplot2 magrittr qvalue tidyr]; }; + supraHex = derive2 { name="supraHex"; version="1.19.1"; sha256="0gkp192jg1xnpy8g320hr89qd1w55dlbc3lir3mmx1yyfcdmiclv"; depends=[ape hexbin MASS]; }; + survcomp = derive2 { name="survcomp"; version="1.31.2"; sha256="029fzp9gpmcrswyd9347kghg1swqkwvi886q4hqffrddwm7dx4a6"; depends=[bootstrap ipred KernSmooth prodlim rmeta SuppDists survival survivalROC]; }; + sva = derive2 { name="sva"; version="3.29.1"; sha256="0864qxajs9r26x7051hfnf9ns813j8v1l7wgkwjndk8i4h0bbchg"; depends=[BiocParallel genefilter limma matrixStats mgcv]; }; swfdr = derive2 { name="swfdr"; version="1.7.0"; sha256="1bnqmz6vcj79j6cp15gla9lmsa3d96m790f5yl9vffbcj48n0rlc"; depends=[dplyr ggplot2 reshape2]; }; - switchBox = derive2 { name="switchBox"; version="1.17.0"; sha256="01bx0ij8ylk0r1hn73mq2dhf07mw8z44bw3mhrydhr8byp0rqz0c"; depends=[gplots pROC]; }; - switchde = derive2 { name="switchde"; version="1.7.0"; sha256="0kicwjsm5k7glcqp3q19aq2cqdyh3s6jblzp836xgygwxm1yab2m"; depends=[dplyr ggplot2 SingleCellExperiment SummarizedExperiment]; }; - synapter = derive2 { name="synapter"; version="2.5.1"; sha256="0nmkyza5a7lzmdpv50s7zn1gd30w4xvjlxaycg8id1n2cjzazq75"; depends=[Biobase Biostrings cleaver knitr lattice MSnbase multtest qvalue RColorBrewer readr rmarkdown]; }; + switchBox = derive2 { name="switchBox"; version="1.17.1"; sha256="06k771nrdzmr8w5k9d5a7b83bwvnahwahdmx5q4cg7n6la1yll91"; depends=[gplots pROC]; }; + switchde = derive2 { name="switchde"; version="1.7.1"; sha256="14n3h4afr3sfv08vxip3i8hnn77npcwvhrfg759da8qaqmyb9dky"; depends=[dplyr ggplot2 SingleCellExperiment SummarizedExperiment]; }; + synapter = derive2 { name="synapter"; version="2.5.2"; sha256="04gxig9cya85xha19zrgqh8hkl43nhpdgvhxh7kl2pnfgx0q82nf"; depends=[Biobase Biostrings cleaver knitr lattice MSnbase multtest qvalue RColorBrewer readr rmarkdown]; }; synergyfinder = derive2 { name="synergyfinder"; version="1.7.0"; sha256="0v76jdh7dh9hhjgxfbls529lrv1wkjvaym39s7ahm3p1njycx05d"; depends=[drc ggplot2 gplots gridBase lattice nleqslv reshape2 SpatialExtremes]; }; synlet = derive2 { name="synlet"; version="1.11.0"; sha256="0ijhssagav4hw7nm8x5157crdv4i8yhikrk6qf9w134lkkl0mviq"; depends=[doBy dplyr ggplot2 magrittr RankProd RColorBrewer reshape2]; }; - systemPipeR = derive2 { name="systemPipeR"; version="1.15.1"; sha256="1ljvvsbwnn03czl8rckbx4rlnggh29y133k95ldj3p8vjn61f23r"; depends=[annotate BatchJobs BiocGenerics Biostrings DESeq2 edgeR GenomicFeatures GenomicRanges ggplot2 GO_db GOstats limma pheatmap rjson Rsamtools ShortRead SummarizedExperiment VariantAnnotation]; }; - tRNAscanImport = derive2 { name="tRNAscanImport"; version="1.1.1"; sha256="0b9qr0wkbdy31j1jnxi6k883avr60shx8v111ra3pjvrfnczl933"; depends=[assertive BiocGenerics Biostrings GenomeInfoDb GenomicRanges reshape2 rtracklayer S4Vectors stringr]; }; - tRanslatome = derive2 { name="tRanslatome"; version="1.19.0"; sha256="08wlv7a39m1zrk8pssmck2zmyghn19ksr9fpf03z8ypwsqghaac5"; depends=[anota Biobase DESeq edgeR GOSemSim gplots Heatplus limma org_Hs_eg_db plotrix RankProd samr sigPathway topGO]; }; - tenXplore = derive2 { name="tenXplore"; version="1.3.0"; sha256="1x0b4gjs1igir8k8zlwc66w63gsf2ffk3vk7yas1cl3ivvvvw400"; depends=[AnnotationDbi matrixStats ontoProc org_Mm_eg_db restfulSE shiny SummarizedExperiment]; }; + systemPipeR = derive2 { name="systemPipeR"; version="1.15.4"; sha256="174nh3p7rhfdhpl0rpyg14z3nr9gkv5j57csazdsqn6qd6fgblxy"; depends=[annotate BatchJobs BiocGenerics Biostrings DESeq2 edgeR GenomicFeatures GenomicRanges ggplot2 GO_db GOstats limma pheatmap rjson Rsamtools ShortRead SummarizedExperiment VariantAnnotation]; }; + tRNA = derive2 { name="tRNA"; version="0.99.11"; sha256="1ahqh4jrlgjdb25v47ilwx84dibgg0birqxz4jxmbkya0sah36i9"; depends=[assertive BiocGenerics Biostrings GenomicRanges ggplot2 IRanges S4Vectors scales stringr XVector]; }; + tRNAdbImport = derive2 { name="tRNAdbImport"; version="0.99.7"; sha256="0rys26q9vrblpkjq1hhsv924k9k3vf40dnqsbmwc7xbwxi3cb434"; depends=[assertive Biostrings GenomicRanges httr IRanges S4Vectors stringr tRNA xml2]; }; + tRNAscanImport = derive2 { name="tRNAscanImport"; version="1.1.9"; sha256="0r971lja5fb352yzvhnvbynci78rpni3rli4kx5pyshh7bymiml2"; depends=[assertive BiocGenerics Biostrings GenomeInfoDb GenomicRanges rtracklayer S4Vectors stringr tRNA]; }; + tRanslatome = derive2 { name="tRanslatome"; version="1.19.5"; sha256="1li5qwwmsq5pgawkb2ffd6yqh8qr88dan624fm938rj0iqdwaxz8"; depends=[anota Biobase DESeq edgeR GOSemSim gplots Heatplus limma org_Hs_eg_db plotrix RankProd sigPathway topGO]; }; + tenXplore = derive2 { name="tenXplore"; version="1.3.1"; sha256="1jam1x14hr8rcgxq21yrpvfxcap3rcpcyz4pxh0d5z9n8ry7m2mr"; depends=[AnnotationDbi matrixStats ontoProc org_Mm_eg_db restfulSE shiny SummarizedExperiment]; }; ternarynet = derive2 { name="ternarynet"; version="1.25.1"; sha256="01yzfiyrbkdgzzkdnn2ifa879j8pal38k8zm83d4ad9y06v8ndbm"; depends=[igraph]; }; - tigre = derive2 { name="tigre"; version="1.35.0"; sha256="0bby62hc2858pppk071fn2qrnqyjwc7fnpvg17y5ff2042mg0g02"; depends=[annotate AnnotationDbi Biobase BiocGenerics DBI gplots RSQLite]; }; + tigre = derive2 { name="tigre"; version="1.35.3"; sha256="0ya16fnif6ww3xviadhrnkh7hdgpi7bb2rbj27lxahd7kpigja2v"; depends=[annotate AnnotationDbi Biobase BiocGenerics DBI gplots RSQLite]; }; tilingArray = derive2 { name="tilingArray"; version="1.59.0"; sha256="1kbw2hj4x3wizqia245kfb1x7rkd6prij7ywif8w3wcv9c8p919m"; depends=[affy Biobase genefilter pixmap RColorBrewer strucchange vsn]; }; timecourse = derive2 { name="timecourse"; version="1.53.0"; sha256="1424s2ai9mkmxxswy6i928gzkk6kk5yz59nxkz91icg39xlf0rl5"; depends=[Biobase limma marray MASS]; }; - timescape = derive2 { name="timescape"; version="1.5.0"; sha256="0p0i3ypd4gg44l8s7yvphjwzadnnf5l6grg28wbm7miim54vvc2y"; depends=[dplyr gtools htmlwidgets jsonlite stringr]; }; + timescape = derive2 { name="timescape"; version="1.5.1"; sha256="0525j832iffyjcb1ii82jy0ix8mdfyf7w9frmc5zrwkflq0x2ds2"; depends=[dplyr gtools htmlwidgets jsonlite stringr]; }; tkWidgets = derive2 { name="tkWidgets"; version="1.59.0"; sha256="0nxvgfl8kmasb1i6s3sq46qz0f7sjbqlwm5hpww1856bqd8dyyld"; depends=[DynDoc widgetTools]; }; - tofsims = derive2 { name="tofsims"; version="1.9.0"; sha256="0hadp7726y0vfaz953hwpl27j8bhrdwrm66c81ic4jrpcicixvvr"; depends=[ALS ChemometricsWithR KernSmooth ProtGenerics Rcpp RcppArmadillo signal]; }; - topGO = derive2 { name="topGO"; version="2.33.0"; sha256="1avq073grahvf92sg4jr6fg3ld5z18l1pnfsgp337m308zvss0mv"; depends=[AnnotationDbi Biobase BiocGenerics DBI GO_db graph lattice matrixStats SparseM]; }; - trackViewer = derive2 { name="trackViewer"; version="1.17.2"; sha256="0hnhcns4kblnlvdsvvs3z1cmgmjvligyw90ykgskq47navwghjmm"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph grImport Gviz htmlwidgets InteractionSet IRanges plotrix Rgraphviz Rsamtools rtracklayer S4Vectors scales]; }; + tofsims = derive2 { name="tofsims"; version="1.9.1"; sha256="12agad74lcnmg6v5g0rjzvk0qa7abav5giaz45rha61f7lz2lv12"; depends=[ALS ChemometricsWithR KernSmooth ProtGenerics Rcpp RcppArmadillo signal]; }; + topGO = derive2 { name="topGO"; version="2.33.1"; sha256="0g6kpxn0x4v55x2p28ikc556hcy3xy1d4wgag01k19ch9bmfaqhs"; depends=[AnnotationDbi Biobase BiocGenerics DBI GO_db graph lattice matrixStats SparseM]; }; + topdownr = derive2 { name="topdownr"; version="1.3.6"; sha256="0wsicb1m9r3a2gzx0masrfbmdd2ind415rp9iba22blj5ykqx4x0"; depends=[Biobase BiocGenerics Biostrings ggplot2 Matrix MSnbase mzR ProtGenerics S4Vectors]; }; + trackViewer = derive2 { name="trackViewer"; version="1.17.8"; sha256="196c6inqnvxb0hdlnmi8dyp9sx9jyx6f3ks4gvlv3687yfb0b3fv"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph grImport Gviz htmlwidgets InteractionSet IRanges plotrix Rgraphviz Rsamtools rtracklayer S4Vectors scales]; }; tracktables = derive2 { name="tracktables"; version="1.15.0"; sha256="05glrr3f9clix43nvbsknicm9lyckswc5vj654444zhx08dmgnj5"; depends=[GenomicRanges IRanges RColorBrewer Rsamtools stringr tractor_base XML XVector]; }; - transcriptR = derive2 { name="transcriptR"; version="1.9.0"; sha256="0i5lclprp0ajm56czknqci6wiml9y30gy4y2gzm9150da2d6m3jc"; depends=[BiocGenerics caret chipseq e1071 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges pROC reshape2 Rsamtools rtracklayer S4Vectors]; }; - transcriptogramer = derive2 { name="transcriptogramer"; version="1.3.5"; sha256="0yfkblrbjgm1nf0c7bvb3xks5mmyf4d6g5m0anzhscq2l6a3r01a"; depends=[biomaRt data_table doSNOW foreach ggplot2 igraph limma progress RedeR snow tidyr topGO]; }; + transcriptR = derive2 { name="transcriptR"; version="1.9.1"; sha256="09ikxr69d54kskrpx18z8gsmbv3fa120x9qncmkmxczddkmswh6j"; depends=[BiocGenerics caret chipseq e1071 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges pROC reshape2 Rsamtools rtracklayer S4Vectors]; }; + transcriptogramer = derive2 { name="transcriptogramer"; version="1.3.6"; sha256="0yzb4yzd5qbcq8gnmni0bprjz2bni2ak08v75ln51k4hcnjdqsxa"; depends=[biomaRt data_table doSNOW foreach ggplot2 igraph limma progress RedeR snow tidyr topGO]; }; + transite = derive2 { name="transite"; version="0.99.4"; sha256="0iikbbpa9ih6jwz3dmcyqr7698axsr4zim9zfmvw5s516q939h2w"; depends=[BiocGenerics Biostrings dplyr GenomicRanges ggplot2 ggseqlogo gridExtra Rcpp scales TFMPvalue]; }; traseR = derive2 { name="traseR"; version="1.11.0"; sha256="18s4sy6v9wzcyd0i33zh1kf4nbxmsmzpvqsz6nz7d26xprmir450"; depends=[BSgenome_Hsapiens_UCSC_hg19 GenomicRanges IRanges]; }; - treeio = derive2 { name="treeio"; version="1.5.1"; sha256="1qn2zxv3adkwddar9d76xghamjl9y7589l2b2b17kd1pldx0q9m3"; depends=[ape dplyr jsonlite magrittr rlang rvcheck tibble tidytree]; }; - trena = derive2 { name="trena"; version="1.3.0"; sha256="1jchm38bwa4bf4a6mjwy4h96qjm65m05qq5yvwdd9257pm1lfs6p"; depends=[AnnotationDbi BiocParallel biomaRt Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 BSgenome_Mmusculus_UCSC_mm10 DBI flare GenomicRanges glmnet lassopv MotifDb org_Hs_eg_db randomForest RPostgreSQL RSQLite SNPlocs_Hsapiens_dbSNP150_GRCh38 vbsr]; }; + treeio = derive2 { name="treeio"; version="1.5.5"; sha256="1nvk2hr75zram3kiw5j65hlzf4gng2j0kbpscn3iwnhv8ja1a08h"; depends=[ape dplyr jsonlite magrittr rlang rvcheck tibble tidytree]; }; + trena = derive2 { name="trena"; version="1.3.1"; sha256="0yzspka8j9iyr4lb8vqsyzap3ps74bjnan3crq2b8qjfpmr0qrcy"; depends=[AnnotationDbi BiocParallel biomaRt Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 BSgenome_Mmusculus_UCSC_mm10 DBI flare GenomicRanges glmnet lassopv MotifDb org_Hs_eg_db randomForest RPostgreSQL RSQLite SNPlocs_Hsapiens_dbSNP150_GRCh38 vbsr]; }; triform = derive2 { name="triform"; version="1.23.0"; sha256="0rmxaa6hfslpqg5zngcy8s659v9n5mry6kjm1svniz347z7smdrj"; depends=[BiocGenerics IRanges yaml]; }; trigger = derive2 { name="trigger"; version="1.27.0"; sha256="0yi3r23yw1vsz5y5wxzql0gmvwks0i6kn7f4r53swzmb12fkgs7h"; depends=[corpcor qtl qvalue sva]; }; trio = derive2 { name="trio"; version="3.19.0"; sha256="1zix49bxx0qiz535cl8pmzjdbh4n4g5qa6bzd87p6ylrzzyxcq0j"; depends=[]; }; @@ -1518,31 +1616,32 @@ in with self; { tspair = derive2 { name="tspair"; version="1.39.0"; sha256="0anbb202pazdryadm7ww68nlrmyzand8kiwjfxnf59n6ansls8nd"; depends=[Biobase]; }; tweeDEseq = derive2 { name="tweeDEseq"; version="1.27.0"; sha256="0aycx0ixg6bj05wz9am84jxbwa9qbbh3hmjp0w4pppzbmv6xrydw"; depends=[cqn edgeR limma MASS]; }; twilight = derive2 { name="twilight"; version="1.57.0"; sha256="0mhx126yqlq76smabagwjxdff6n3vn9vzsr38nn0v8cs4vzq7v20"; depends=[Biobase]; }; - twoddpcr = derive2 { name="twoddpcr"; version="1.5.1"; sha256="0kw54x0wsf6mdbdzhvlyh8p8s6vw7yr8a2iyac7j50sqz3zwip5y"; depends=[class ggplot2 hexbin RColorBrewer S4Vectors scales shiny]; }; - tximport = derive2 { name="tximport"; version="1.9.7"; sha256="0xyb1zigqcpdfcwb3gyn7zwqmdxca4cpwl83qhxrfhb30jccxs6g"; depends=[]; }; + twoddpcr = derive2 { name="twoddpcr"; version="1.5.2"; sha256="0vs1hhlpsn08g5vf5yza0lb055x3lj0xwhgnd4lnq1qc8d1ksz1r"; depends=[class ggplot2 hexbin RColorBrewer S4Vectors scales shiny]; }; + tximeta = derive2 { name="tximeta"; version="0.99.18"; sha256="1x5vv6w34w3fqrp04i3zbq11zb8mblkvdqgmd790ll0f5y1qhq58"; depends=[AnnotationDbi BiocFileCache ensembldb GenomeInfoDb GenomicFeatures jsonlite rappdirs S4Vectors SummarizedExperiment tibble tximport]; }; + tximport = derive2 { name="tximport"; version="1.9.12"; sha256="1s5h5kxzb8nq9qc68rq5ik894yx7jl0315cn1b4k97i12rpajyjf"; depends=[]; }; uSORT = derive2 { name="uSORT"; version="1.7.0"; sha256="1f5dabc7ksz6fhx7x87dm8whlxrhzh5zzfysgs18fv6yn815x747"; depends=[Biobase BiocGenerics cluster fpc gplots igraph Matrix monocle plyr RANN RSpectra VGAM]; }; unifiedWMWqPCR = derive2 { name="unifiedWMWqPCR"; version="1.17.0"; sha256="0rf9hrilb6d9jr2lbw20d3almds9lmhbdkmm130kx26kybp6vi1i"; depends=[BiocGenerics HTqPCR]; }; - variancePartition = derive2 { name="variancePartition"; version="1.11.6"; sha256="1759wz6xfvsbc0kf09dqq3n59nqqw0z81khh5gvzbgvq5q17ak3h"; depends=[Biobase colorRamps doParallel foreach ggplot2 gplots iterators limma lme4 lmerTest MASS pbkrtest reshape2]; }; + variancePartition = derive2 { name="variancePartition"; version="1.11.14"; sha256="091j76x1jcc6g8vnzsjfnpf8q6d35rmvmv7sxcjx1jdyshl7gfjd"; depends=[Biobase colorRamps doParallel foreach ggplot2 gplots iterators limma lme4 lmerTest MASS pbkrtest reshape2 scales]; }; vbmp = derive2 { name="vbmp"; version="1.49.0"; sha256="0h2lwkqx765s6iyyr3mivj83zdg761bci0jz1g8q9wl8xk72ajif"; depends=[]; }; - vidger = derive2 { name="vidger"; version="1.1.3"; sha256="1hvxp7lzy95i37vyhk0xa0dpn64f9kflx6k95cndl0bbivq6lrbb"; depends=[Biobase DESeq2 edgeR GGally ggplot2 ggrepel knitr RColorBrewer rmarkdown scales SummarizedExperiment tidyr]; }; - viper = derive2 { name="viper"; version="1.15.0"; sha256="0cl6qn0jw5xgrg2wz9rkx8j5w3hx9vbjw1yh1ayvsdghb4vb8k5b"; depends=[Biobase e1071 KernSmooth mixtools]; }; + vidger = derive2 { name="vidger"; version="1.1.4"; sha256="1a48x1jjyccxbz792j7g538w82ascmm4aja10q0r60994h6hx6f2"; depends=[Biobase DESeq2 edgeR GGally ggplot2 ggrepel knitr RColorBrewer rmarkdown scales SummarizedExperiment tidyr]; }; + viper = derive2 { name="viper"; version="1.15.1"; sha256="1mi1qcznr8xcz5n5wr8mcbq5wxvb00rz4zahyv90aa5py62sxagw"; depends=[Biobase e1071 KernSmooth mixtools]; }; vsn = derive2 { name="vsn"; version="3.49.1"; sha256="1lklwnxvwv1x68nyywxkdgla5pz8d94a86whf5x9vcbvcmk92x2i"; depends=[affy Biobase ggplot2 lattice limma]; }; vtpnet = derive2 { name="vtpnet"; version="0.21.0"; sha256="0f89b3s1412sxwp64dlnc8rlawy2w86d1y5g1c7n2hd290m51dvp"; depends=[doParallel foreach GenomicRanges graph gwascat]; }; - vulcan = derive2 { name="vulcan"; version="1.3.0"; sha256="182aq3ly17chrlisdjsf3zzwxfv004cwbbpl2rfk40ws1376xf1i"; depends=[Biobase caTools ChIPpeakAnno csaw DESeq DiffBind GenomicRanges gplots locfit S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene viper wordcloud zoo]; }; - wateRmelon = derive2 { name="wateRmelon"; version="1.25.0"; sha256="0arrpkdrxy1rz3ryiswq767rz5rqmvs2rxj85lagk6rj17ia64c2"; depends=[Biobase IlluminaHumanMethylation450kanno_ilmn12_hg19 illuminaio limma lumi matrixStats methylumi ROC]; }; + vulcan = derive2 { name="vulcan"; version="1.3.1"; sha256="0lviq4mgnpfqb0rrh64r73xlqb50q2k4qagbn8gn9ifj35wvv2lr"; depends=[Biobase caTools ChIPpeakAnno csaw DESeq DiffBind GenomicRanges gplots locfit S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene viper wordcloud zoo]; }; + wateRmelon = derive2 { name="wateRmelon"; version="1.25.2"; sha256="0cqy6kp2d4bms235sdzr9vy8j0956wyqr80q2kk4jqywxcb6l1yn"; depends=[Biobase IlluminaHumanMethylation450kanno_ilmn12_hg19 illuminaio limma lumi matrixStats methylumi ROC]; }; wavClusteR = derive2 { name="wavClusteR"; version="2.15.0"; sha256="0pngqm1b5z8zm5sdnqprq5mibrfm5rwzi0sa0mgwg9gsrn8wcg09"; depends=[BiocGenerics Biostrings foreach GenomicFeatures GenomicRanges ggplot2 Hmisc IRanges mclust Rsamtools rtracklayer S4Vectors seqinr stringr wmtsa]; }; waveTiling = derive2 { name="waveTiling"; version="1.23.0"; sha256="018vhrv092qfyd5vmdbq216h3rsr6xk9nnknb4x0vnk1l7yckrk8"; depends=[affy Biobase Biostrings GenomeGraphs GenomicRanges IRanges oligo oligoClasses preprocessCore waveslim]; }; weaver = derive2 { name="weaver"; version="1.47.0"; sha256="096sgg9xrnlf819bh6gz6a9phbhn7a54phd4nl8gz7xfjxscfrhi"; depends=[codetools digest]; }; - webbioc = derive2 { name="webbioc"; version="1.53.0"; sha256="0vm80p0sbp9lj9d29g3agmkrav4whbndgj4rhw9gz9cd7i1lv0jj"; depends=[affy annaffy Biobase BiocInstaller gcrma multtest qvalue vsn]; }; + webbioc = derive2 { name="webbioc"; version="1.53.1"; sha256="0wjkfa6s1a0vhbfpplsvy0qzkrs94x2zd3s1kpcg5p6j4v9x9ph4"; depends=[affy annaffy Biobase BiocManager gcrma multtest qvalue vsn]; }; widgetTools = derive2 { name="widgetTools"; version="1.59.0"; sha256="1ypz4rpi6yw6dg1w1dgnjx389xldmjzh484bs9dqzz27ly8b860v"; depends=[]; }; - wiggleplotr = derive2 { name="wiggleplotr"; version="1.5.0"; sha256="1n338nhd8rpdv218qwnlrj8vqvnq131x51nfylzv9a8fn4d3lv7g"; depends=[assertthat cowplot dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges purrr rtracklayer S4Vectors]; }; - xcms = derive2 { name="xcms"; version="3.3.2"; sha256="1pnbp8a9gx1ys69yr7vv7mdzl5mcj9azxy0agq16xhxix7mwp13w"; depends=[Biobase BiocGenerics BiocParallel lattice MassSpecWavelet MSnbase multtest mzR plyr ProtGenerics RANN RColorBrewer robustbase S4Vectors]; }; + wiggleplotr = derive2 { name="wiggleplotr"; version="1.5.1"; sha256="01d237s89qkj5i2d377g20h2ibqz1f4m087xchq1lnfmkb3mq0fm"; depends=[assertthat cowplot dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges purrr rtracklayer S4Vectors]; }; + xcms = derive2 { name="xcms"; version="3.3.6"; sha256="17mj4jlw0r48l311nhh44qpmgjcw4bq535xj7ljvg5mkxx74zlxj"; depends=[Biobase BiocGenerics BiocParallel lattice MassSpecWavelet MSnbase multtest mzR plyr ProtGenerics RANN RColorBrewer robustbase S4Vectors]; }; xmapbridge = derive2 { name="xmapbridge"; version="1.39.0"; sha256="075yj9vqy4gf5ijirpfnm08rxqzg3bflirlr5j6qmr146jsj5cky"; depends=[]; }; xps = derive2 { name="xps"; version="1.41.2"; sha256="01da8wc01fry7z8ma880h5g6vvqi3rdwqg5wmx9x56yfg0c293im"; depends=[]; }; yamss = derive2 { name="yamss"; version="1.7.0"; sha256="1h8wz9cm042n9scgpm0m3c7v3wik8nr7lrm4nb47bikzcij7ymd3"; depends=[BiocGenerics data_table EBImage IRanges limma Matrix mzR S4Vectors SummarizedExperiment]; }; yaqcaffy = derive2 { name="yaqcaffy"; version="1.41.0"; sha256="044gyqh9pk2ml6f99mfjfw7zp2ygnis74jh4x8z7i99q6jip8pbn"; depends=[simpleaffy]; }; - yarn = derive2 { name="yarn"; version="1.7.0"; sha256="19x4r9mmii1r4ypj2p6f4vk396f0xqzbbpys3wqkwklf9gsqia32"; depends=[Biobase biomaRt downloader edgeR gplots limma matrixStats preprocessCore quantro RColorBrewer readr]; }; + yarn = derive2 { name="yarn"; version="1.7.1"; sha256="02km8cd5l2l7whzb585c741qkzv6zlmxrl0fjfp13nsww69vg914"; depends=[Biobase biomaRt downloader edgeR gplots limma matrixStats preprocessCore quantro RColorBrewer readr]; }; zFPKM = derive2 { name="zFPKM"; version="1.3.0"; sha256="12yj97g1y37aq4qfyqchgvp93kkb0bzxmk196s1vygh4dk0b36lp"; depends=[checkmate dplyr ggplot2 SummarizedExperiment tidyr]; }; - zinbwave = derive2 { name="zinbwave"; version="1.3.2"; sha256="1arl59nlzksmc95hqp5pj86yj8xq122mdw3ng4pxwdbm5fs63dw7"; depends=[BiocParallel copula edgeR genefilter glmnet Matrix SingleCellExperiment softImpute SummarizedExperiment]; }; + zinbwave = derive2 { name="zinbwave"; version="1.3.4"; sha256="0px2v20plqnshb41wy7fk9vh00l45m8mm7paqd4m197wjpxbyf3s"; depends=[BiocParallel copula edgeR genefilter glmnet Matrix SingleCellExperiment softImpute SummarizedExperiment]; }; zlibbioc = derive2 { name="zlibbioc"; version="1.27.0"; sha256="17jr4jgl30qlnmjfzzc1qd1rah5c9bwbp08dsnkhy7fxpwimqm2i"; depends=[]; }; } diff --git a/pkgs/development/r-modules/cran-packages.nix b/pkgs/development/r-modules/cran-packages.nix index db78421cf5efabd464f96bb7027b7aa84524df38..e942aa8387701355f885f4bbb8c3a2d1ea222869 100644 --- a/pkgs/development/r-modules/cran-packages.nix +++ b/pkgs/development/r-modules/cran-packages.nix @@ -4,7 +4,7 @@ # Rscript generate-r-packages.R cran >new && mv new cran-packages.nix { self, derive }: -let derive2 = derive { snapshot = "2018-07-06"; }; +let derive2 = derive { snapshot = "2018-10-29"; }; in with self; { A3 = derive2 { name="A3"; version="1.0.0"; sha256="017hq9pjsv1h9i7cqk5cfx27as54shlhdsdvr6jkhb8jfkpdb6cw"; depends=[pbapply xtable]; }; ABC_RAP = derive2 { name="ABC.RAP"; version="0.9.0"; sha256="1kdspln17v0krvahcd55vib4dv5azp60b3r1zf489x10qqbp1mxk"; depends=[]; }; @@ -12,7 +12,7 @@ in with self; { ABCoptim = derive2 { name="ABCoptim"; version="0.15.0"; sha256="1ih0xk88qhsmpvnxf56041wx5sk8as2f4f2gdnpnwdym9mbr9n4b"; depends=[Rcpp]; }; ABCp2 = derive2 { name="ABCp2"; version="1.2"; sha256="1s2skkxpzss7c29i8600psgrp0hl46jcrxqrmy2b4db8hc0kcnbx"; depends=[MASS]; }; ABHgenotypeR = derive2 { name="ABHgenotypeR"; version="1.0.1"; sha256="08cpmnaaxsm5c5bjifnfxdlvg5inrf13biqpcl2yq5zpqjmiki0l"; depends=[ggplot2 reshape2]; }; - ABPS = derive2 { name="ABPS"; version="0.2"; sha256="1k3f5i34f4w2khkszb4qhwwcpiy7gsfh82vjr6rypwg6rx5rjclq"; depends=[kernlab]; }; + ABPS = derive2 { name="ABPS"; version="0.3"; sha256="0n3f66nmfi5v94il1mxy026mi84w01ph2aljk60vn3mrz8kwf2ll"; depends=[kernlab]; }; ACA = derive2 { name="ACA"; version="1.1"; sha256="1i3hm27nvnkvc39xlh0d1blq8q0q02czmvgi3cazmjx3jvxay0vq"; depends=[]; }; ACCLMA = derive2 { name="ACCLMA"; version="1.0"; sha256="1na27sp18fq12gp6vxgqw1ffsz2yi1d8xvrxbrzx5g1kqxrayy0v"; depends=[]; }; ACD = derive2 { name="ACD"; version="1.5.3"; sha256="1a67bi3hklq8nlc50r0qnyr4k7m9kpvijy8sqqpm54by5hsysfd6"; depends=[]; }; @@ -26,9 +26,9 @@ in with self; { ADCT = derive2 { name="ADCT"; version="0.1.0"; sha256="1glf83ydx4v3ld8c4gb9h3jk6srd054bis5l8k57p1ba4fnqnnpp"; depends=[mvtnorm]; }; ADDT = derive2 { name="ADDT"; version="2.0"; sha256="044bb1jw2m8vwk5q8l7rlz4kqphjvy8i9d59rjg0k5q5l9vczfrp"; depends=[coneproj Matrix nlme]; }; ADGofTest = derive2 { name="ADGofTest"; version="0.3"; sha256="0ik817qzqp6kfbckjp1z7srlma0w6z2zcwykh0jdiv7nahwk3ncw"; depends=[]; }; - ADMM = derive2 { name="ADMM"; version="0.3.0"; sha256="0j3sh497pf495qf1ivvp8h4hplq6km6m923kiv5j02sianl1j9zh"; depends=[doParallel foreach Matrix Rcpp RcppArmadillo Rdpack]; }; + ADMM = derive2 { name="ADMM"; version="0.3.1"; sha256="121hqglivik65gv657bdv7a8kzgvrwgwckz2h746fcibv2s7dfsi"; depends=[doParallel foreach Matrix Rcpp RcppArmadillo Rdpack]; }; ADMMnet = derive2 { name="ADMMnet"; version="0.1"; sha256="15f1zhgv7xai954qz2ahj4kpxyvr2svxpmybz7j43bhjpkq72dmq"; depends=[Matrix Rcpp RcppEigen]; }; - ADMMsigma = derive2 { name="ADMMsigma"; version="2.0"; sha256="1lyixqbfmrk850y4v89chwws0arjc6j420r55p733p0zvj0mryha"; depends=[doParallel dplyr foreach ggplot2 Rcpp RcppArmadillo RcppProgress]; }; + ADMMsigma = derive2 { name="ADMMsigma"; version="2.1"; sha256="1943dza086s22pr0yz41wzn9cdg11x7fl9zr3w012865yj219m7l"; depends=[doParallel dplyr foreach ggplot2 Rcpp RcppArmadillo RcppProgress]; }; ADPF = derive2 { name="ADPF"; version="0.0.1"; sha256="1n7302xx77ngvp9i2h582i1mqslzllcdr0bn3pl2zk9jd8k97p7n"; depends=[]; }; ADPclust = derive2 { name="ADPclust"; version="0.7"; sha256="0s47cpsjykn7imsssa9w9b6g9d1sz2yah78yqzxmh0i3lqd757c1"; depends=[cluster dplyr fields knitr]; }; AEDForecasting = derive2 { name="AEDForecasting"; version="0.20.0"; sha256="16q2sn5zzvysyy3r32jnr21pbdkkn0k0sbarni6fdkx7pj27yijn"; depends=[changepoint forecast signal]; }; @@ -61,7 +61,7 @@ in with self; { AMModels = derive2 { name="AMModels"; version="0.1.3"; sha256="1lhd15sh550z664qqxw6jpknnh628hm585d70ipx8s4mswi6g4hj"; depends=[unmarked]; }; AMOEBA = derive2 { name="AMOEBA"; version="1.1"; sha256="1npzh3rpfnxd4r1pj1hm214sfgbw4wmq4ws093lnl7pvsl0q37xn"; depends=[rlecuyer snowfall spdep]; }; AMORE = derive2 { name="AMORE"; version="0.2-15"; sha256="00zfqcsah2353mrhqkv8bbh24l8gaxk4y78icr9kxy4pqb2988yz"; depends=[]; }; - AMR = derive2 { name="AMR"; version="0.2.0"; sha256="0n3qzkqxq06vxx0nk4983k7khcy14hc4cxd3cii8lscf3y6bmvjc"; depends=[backports data_table dplyr knitr reshape2 rvest tibble xml2]; }; + AMR = derive2 { name="AMR"; version="0.4.0"; sha256="056r5z553r6amq7kdbc4rl4mqlcrzsm7aprlf733as8rrabjfh9c"; depends=[backports curl data_table dplyr hms knitr rlang rvest xml2]; }; ANN2 = derive2 { name="ANN2"; version="1.5"; sha256="17b0dv1dl4kni7yvrrwk65cadk6f7qk7505r27j9v530pffyv1k3"; depends=[Rcpp RcppArmadillo robustbase]; }; ANOM = derive2 { name="ANOM"; version="0.5"; sha256="14nfy9xplbabfprwxz5fvx26nmqhp657vr6d90dc8vk8ds63ckiz"; depends=[ggplot2 MCPAN multcomp nparcomp SimComp]; }; ANOVA_TFNs = derive2 { name="ANOVA.TFNs"; version="1.0"; sha256="0dwspvxj2gzyvxsd9xyhv47n1hjlqa7z9qza4h3hn1xda12vkjly"; depends=[FuzzyNumbers]; }; @@ -72,24 +72,26 @@ in with self; { APSIM = derive2 { name="APSIM"; version="0.9.2"; sha256="0yyjz1kyvqpw9dh71ls2lf44gbb6r7bp9a22mr3z68k89azps5rc"; depends=[data_table lubridate plyr RSQLite sirad stringr]; }; APSIMBatch = derive2 { name="APSIMBatch"; version="0.1.0.2374"; sha256="0j44ijq1v1k60lka9nmw8m1jfjw7pidny9bvswqy5v82gzmwl29d"; depends=[]; }; APfun = derive2 { name="APfun"; version="0.1.3"; sha256="02p40n4l66r63wq8x7ygchfhxmnpaa7vgy4bjhkqx5gfi2v4psxd"; depends=[maptools raster rgdal sp yesno]; }; - APtools = derive2 { name="APtools"; version="3.0"; sha256="0v5xgznc8hvw3gid8x5chksc62zpwbx34qsh64sv7d1kqmh5w26j"; depends=[survival]; }; + APtools = derive2 { name="APtools"; version="6.8.8"; sha256="171aydyd7s8qll7djl4ysy596wxdf5wfwpqwfi14jjglc9r9qrrr"; depends=[cmprsk survival]; }; AR = derive2 { name="AR"; version="1.1"; sha256="1wn4g2997c4vc3mzq2pv8ld0ryp0i78v4zlqqryvhshxgnz4f2pr"; depends=[DISTRIB]; }; AR1seg = derive2 { name="AR1seg"; version="1.0"; sha256="0v9adx5wj9r4jwl3bqqmj0byiqfp585jz013qfqrq601wj8v4zi3"; depends=[Segmentor3IsBack]; }; ARCensReg = derive2 { name="ARCensReg"; version="2.1"; sha256="05zjk1wxqfigzg80lvx1940a059jfdr9zbzgzmz2n01glj1lvj63"; depends=[msm mvtnorm numDeriv tmvtnorm]; }; ARHT = derive2 { name="ARHT"; version="0.1.0"; sha256="1fz81a202r8vk655dg6a03zfq3gfkimqjvmc95k3j02xz0iv58kn"; depends=[]; }; + ARIbrain = derive2 { name="ARIbrain"; version="0.2"; sha256="18c7yxkrnqh18gcfzvdc5wqig6ywdmjcy8rlz0fdj3b8fb84dfpr"; depends=[hommel plyr RNifti]; }; AROC = derive2 { name="AROC"; version="1.0"; sha256="1mmcd8nqwzaqghzbcrv0g767j57svzvlzgk71ir61vvjhsk91dkg"; depends=[Hmisc MASS Matrix moments np]; }; ARPobservation = derive2 { name="ARPobservation"; version="1.1"; sha256="1cdhn11jf1nf03jyvs17ygmjq9pb5rvmyyrq9fp7ifmvcgbkwsms"; depends=[]; }; ART = derive2 { name="ART"; version="1.0"; sha256="186w1ivj5v3h906crl953qxgai5wiznaih83dgvwgnmabs9p1wvk"; depends=[car]; }; ARTIVA = derive2 { name="ARTIVA"; version="1.2.3"; sha256="1jdvsslc8parz7wibcv51fx62brl2mc6i482hz43j1npsms2z1hl"; depends=[gplots igraph MASS]; }; ARTP = derive2 { name="ARTP"; version="2.0.5"; sha256="0lwvhf5lamw28sd41vrhyin8ab92rl93j1ahk0aacwvnikgmfkpj"; depends=[]; }; - ARTP2 = derive2 { name="ARTP2"; version="0.9.32"; sha256="12mrxssjcj08svdsrxv2nm53mzsgy1k0whd5zzy6fz327bjyqsrz"; depends=[data_table Formula]; }; - ARTool = derive2 { name="ARTool"; version="0.10.4"; sha256="1malrjv4myk9nj3dndgpzscfhky4y6lj8xbfg8h2b29g7s2k846q"; depends=[car dplyr lme4 magrittr plyr]; }; + ARTP2 = derive2 { name="ARTP2"; version="0.9.44"; sha256="0qwjfpinvlsxswq7m2biyd78cvm14xbb09g873vhmkjds3qxdk4c"; depends=[data_table Formula]; }; + ARTool = derive2 { name="ARTool"; version="0.10.5"; sha256="1l219j5zp0sck0l326fi8nfsw29d83h18ahm4gs4bknfbbv895ic"; depends=[car dplyr lme4 magrittr plyr]; }; ASGS_foyer = derive2 { name="ASGS.foyer"; version="0.2.1"; sha256="0f0bl1fxda012d8pgqpaqb80m0nn490xih3ddscfqgb87zgrp4sx"; depends=[sp]; }; ASIP = derive2 { name="ASIP"; version="0.4.9"; sha256="06f1nvy920vyx3bmdi77mwvfsn32xsfxaslhagnf1zh652vfkbwi"; depends=[raster rgdal stringr]; }; - ASMap = derive2 { name="ASMap"; version="1.0-2"; sha256="0fhivq5i2py79jkwfms0my77p9x8lrkn5vn1lwbsawfkyar4dvkq"; depends=[fields gtools lattice qtl RColorBrewer]; }; + ASMap = derive2 { name="ASMap"; version="1.0-4"; sha256="0xnrl8jhbvbc789w5gc9dz7j7gzc7wsc94a3d2wdplrmxn186nrb"; depends=[fields gtools lattice qtl RColorBrewer]; }; ASPBay = derive2 { name="ASPBay"; version="1.2"; sha256="0b1qpyvmj7z10ixrmdxp42bj9s72c1l9rihzmv9p58f12a5aznjz"; depends=[hexbin Rcpp RcppArmadillo]; }; ASSA = derive2 { name="ASSA"; version="1.0"; sha256="0xdmkl3qy1i6rb5wpiw6rqhz5c88zg9nav7qll235jvxwh3388xk"; depends=[]; }; ASSISTant = derive2 { name="ASSISTant"; version="1.2-3"; sha256="072lmvmdi5yfyfda42vs556ciwj2rnka02isnknk6czir3947nck"; depends=[mvtnorm R6]; }; + AST = derive2 { name="AST"; version="0.1.0"; sha256="0z5dw5qw0i61v4796ms7pp66f9y4ylxrcls31ixzcmkklh3rcnp3"; depends=[]; }; ATE = derive2 { name="ATE"; version="0.2.0"; sha256="1i46ivb7q61kq11z9v1rlnwad914nsdjcz9bagqx17vjk160mc0a"; depends=[]; }; ATR = derive2 { name="ATR"; version="0.1-0"; sha256="0ljrpix3ksi0v38sfb25s2dlfj1yjbvwcz147dk2v2c24cn3r816"; depends=[partykit]; }; ATmet = derive2 { name="ATmet"; version="1.2"; sha256="047ibxxf5si45zw22zy8a1kpj36q0pd3bsmxwvn0dhf4h65ah0zz"; depends=[DiceDesign lhs metRology msm sensitivity]; }; @@ -100,13 +102,14 @@ in with self; { AWR_Athena = derive2 { name="AWR.Athena"; version="1.1.0-1"; sha256="0p701jj1683npsxa3l5g0cd35yvp9823kadpw9fjvn9ixdfy1nk1"; depends=[rJava RJDBC]; }; AWR_KMS = derive2 { name="AWR.KMS"; version="0.1"; sha256="00aqhyqlncsv0vfcyhaazxaclwm63v5kscssash7529avdwd4gqg"; depends=[AWR jsonlite rJava]; }; AWR_Kinesis = derive2 { name="AWR.Kinesis"; version="1.7.3"; sha256="1gfjzbb8xxfd2x5zabysqi0x10sb1c9826wqw8y555nsxgksqxz8"; depends=[AWR futile_logger jsonlite rJava]; }; - AbSim = derive2 { name="AbSim"; version="0.2.4"; sha256="0n90zbm5nsb9ric92p0mp3a4nzivdh8m8dls18051v2dbn5h4z1v"; depends=[ape poweRlaw]; }; + AbSim = derive2 { name="AbSim"; version="0.2.6"; sha256="16ddjk8b6xw80ch4jis1y751i9561wdxh0gifbf15qiz3vjckq8m"; depends=[ape poweRlaw]; }; AbsFilterGSEA = derive2 { name="AbsFilterGSEA"; version="1.5.1"; sha256="15srxkxsvn38kd5frdrwfdf0ad8gskrd0h01wmdf9hglq8fjrp7w"; depends=[Biobase DESeq limma Rcpp RcppArmadillo]; }; Ac3net = derive2 { name="Ac3net"; version="1.2.2"; sha256="1ns4n0xxz6p34c11bj0k7nzgmyqr9mis2b0g5nfz37dbikndyqyz"; depends=[data_table]; }; AcceptanceSampling = derive2 { name="AcceptanceSampling"; version="1.0-5"; sha256="18krmmyn8pn11aqd81kbvka68lnd36mnpdh7p3pz9r4m4vjj007x"; depends=[]; }; - AcousticNDLCodeR = derive2 { name="AcousticNDLCodeR"; version="1.0.1"; sha256="16rmwz51fy84w83vwnq2nv9mcrp4gi9ciirj5555gl1224b9i2am"; depends=[seewave tuneR zoo]; }; + AcousticNDLCodeR = derive2 { name="AcousticNDLCodeR"; version="1.0.2"; sha256="1fgzgwanpv2pzy74xdk3hamc44p8qch467wh163dxby8jr9ik0sb"; depends=[seewave tuneR zoo]; }; AcrossTic = derive2 { name="AcrossTic"; version="1.0-3"; sha256="03180h79jhjd66ibrnsfp3yyp2jlfysp7cymw46phzj2palghsc0"; depends=[lpSolve treeClust]; }; Actigraphy = derive2 { name="Actigraphy"; version="1.3.2"; sha256="0y0ccmxhdfhdmi4k6pbfvnqknkqbgvfsf2qf7z7rc4xpfgym6574"; depends=[fda SDMTools]; }; + ActisoftR = derive2 { name="ActisoftR"; version="0.0.2"; sha256="07nq31r71kg94zlyzshcnsfl99cc3x03fw5q8qgsfkpc92ridikr"; depends=[data_table dplyr ggplot2 lubridate magrittr RColorBrewer scales tibble tidyr]; }; ActiveDriver = derive2 { name="ActiveDriver"; version="1.0.0"; sha256="10c7ga48fwvpd5mc4dqiyw4kc2l0iz5qn4hg7xk15r1qmm5rsipa"; depends=[MASS]; }; AcuityView = derive2 { name="AcuityView"; version="0.1"; sha256="0f0iclmnwdc8ixiiai4svk4x1g3pjy7dhm3cm58fv6ckx12d3d2l"; depends=[fftwtools imager plotrix]; }; AdMit = derive2 { name="AdMit"; version="2.1.3"; sha256="150zjxl56axhpgm25hzyhwwc5g77pkgi291d2v56zbjjqycfz2v8"; depends=[mvtnorm]; }; @@ -115,19 +118,22 @@ in with self; { AdapSamp = derive2 { name="AdapSamp"; version="1.1.1"; sha256="1jayjrsiib2ij4rxxj59g71r3xhzl5yqh0lhi8k6cfy03i7dkvis"; depends=[pracma]; }; AdaptFit = derive2 { name="AdaptFit"; version="0.2-2"; sha256="124lj1sq5cbp35z4ybkc7ci3fi6pgf8pc5k9mpqmyb6dj870q836"; depends=[cluster MASS nlme SemiPar]; }; AdaptFitOS = derive2 { name="AdaptFitOS"; version="0.67"; sha256="0s8vv960pkbccpwlfsg1jsfjnfmq9iy8cj1fak5fn2s60zb7nm0a"; depends=[MASS mgcv nlme SemiPar]; }; - AdaptGauss = derive2 { name="AdaptGauss"; version="1.3.3"; sha256="0f6wk9ds8ayzi0fj1dz1m3755d1sjv4v5vc1hjhfxaim127kmbqh"; depends=[caTools ggplot2 shiny]; }; + AdaptGauss = derive2 { name="AdaptGauss"; version="1.3.5"; sha256="064mpylzpz7ngqlk637b9ykia4zn7jpcdnxdfp5j84a0fvbm8gx8"; depends=[ggplot2 pracma shiny]; }; + AdaptiveSparsity = derive2 { name="AdaptiveSparsity"; version="1.6"; sha256="0imr5m8mll9j6n4icsv6z9rl5kbnwsp9wvzrg7n90nnmcxq2cz91"; depends=[MASS Matrix Rcpp RcppArmadillo]; }; AdequacyModel = derive2 { name="AdequacyModel"; version="2.0.0"; sha256="0amp6ic1wylk24sp9wpx3ci38njj7b9qjqfp89j39hkl6kc1q7sq"; depends=[]; }; AdhereR = derive2 { name="AdhereR"; version="0.2.0"; sha256="1w42wg52ca0vdrj61dmyikvjvsndwhpyvnkzyissf3zvb69v32im"; depends=[data_table lubridate manipulate shiny]; }; AdjBQR = derive2 { name="AdjBQR"; version="1.0"; sha256="14437pyz9v09ighwqvy1lcw0vfp2gaqzs9nzrb1gkfbb8ndzjw7k"; depends=[coda MHadaptive quantreg survival]; }; AdvBinomApps = derive2 { name="AdvBinomApps"; version="1.0"; sha256="1cnmn6c2dyl8qfl7g5sqwbjb52psqxzrj1mbm06zak2y1j7j8f49"; depends=[GenBinomApps rootSolve]; }; - AdvDif4 = derive2 { name="AdvDif4"; version="0.2.18"; sha256="0vc8hbqjad9rsssd3ff84bgqxz4q6ad1fbz5gcaq1s08979r3kkk"; depends=[]; }; + AdvDif4 = derive2 { name="AdvDif4"; version="0.3.18"; sha256="0a7yjz9qsyacwb620pcgax9dxmr1qy7a0vypsr5dw2baxm9y4k6z"; depends=[]; }; AggregateR = derive2 { name="AggregateR"; version="0.0.2"; sha256="15gxzs3baa6f1rqwv7s7k6zybx0za1mpzc7db1n47jy9rbh2yxb2"; depends=[dummy]; }; + AgreementInterval = derive2 { name="AgreementInterval"; version="0.1.1"; sha256="1bvinzylvsaipa8mq15f45b6h37znavlrdl0rbrx1pqw52r7z8kv"; depends=[psych]; }; AhoCorasickTrie = derive2 { name="AhoCorasickTrie"; version="0.1.0"; sha256="0k2lcyxfsavis9g1g5293f0mw7f6jakkr11wkkjvxdlnba9c80r8"; depends=[Rcpp]; }; Ake = derive2 { name="Ake"; version="1.0"; sha256="1dj598xfdyjqvysc39a0d5gizgk367c5lkddmwmsqa8zjmvpr15a"; depends=[]; }; AlgDesign = derive2 { name="AlgDesign"; version="1.1-7.3"; sha256="0bl7mx4dnmkgs2x1fj7cqnrp7jx18mqwxyga0rzlniq12h8mc3fz"; depends=[]; }; AlgebraicHaploPackage = derive2 { name="AlgebraicHaploPackage"; version="1.2"; sha256="1krm5cx609sv2p0g3xm5jaiqs9li06v717lw7ywjvx7myc9x4c07"; depends=[]; }; AllPossibleSpellings = derive2 { name="AllPossibleSpellings"; version="1.1"; sha256="0ksfm2pfjka3yjgcd257v7sns1niaylsfxvhhh2jwdi016cpdw10"; depends=[]; }; AlleleRetain = derive2 { name="AlleleRetain"; version="2.0.2"; sha256="0b6h5giskqbjbrk8nf29i75wrhxsjw1c87laiqzrpbp9n717bl20"; depends=[]; }; + AlphaSimR = derive2 { name="AlphaSimR"; version="0.8.2"; sha256="0illa9y0k1xlvwmnpmgabbjqa73pl6gvvb29n97vlpbv5zkpfk8l"; depends=[BH R6 Rcpp RcppArmadillo]; }; AlphaVantageClient = derive2 { name="AlphaVantageClient"; version="0.0.1"; sha256="095m850v945lw7i3qd812p28srdb5hdk9h52zf6bkr166zai1ni0"; depends=[httr xts]; }; Amelia = derive2 { name="Amelia"; version="1.7.5"; sha256="1mnvms3bgc5i0v7wdmfx7nikr8wxyzmqi36sj2fz4qv5b0mf4zpa"; depends=[foreign Rcpp RcppArmadillo]; }; AmericanCallOpt = derive2 { name="AmericanCallOpt"; version="0.95"; sha256="1nhy44j5bmmjsp6g79nrn741rzzxikhdnxk4wwbdj9igcc1bs573"; depends=[]; }; @@ -138,7 +144,7 @@ in with self; { AmpliconDuo = derive2 { name="AmpliconDuo"; version="1.1"; sha256="1vqpahavsksphxjyhd94dghg9ddskbfbs5vl5qcwl3jkjfvl7lwy"; depends=[ggplot2 xtable]; }; AmyloGram = derive2 { name="AmyloGram"; version="1.1"; sha256="1xdi3i3nw4fzj4d040r55f0gid72gy3vbz5nbdrvapl97zk3kp8c"; depends=[biogram ranger seqinr shiny]; }; AnDE = derive2 { name="AnDE"; version="1.0"; sha256="1yil8ab50wvlqmdla9kmfba8vfgy5r694r6igb58s6vnmld78yf2"; depends=[discretization foreign functional stringr]; }; - AnaCoDa = derive2 { name="AnaCoDa"; version="0.1.1"; sha256="1v8jlyzqp9k084lzmaihp5nh7mybbgnnxnbbfkydq24b9wskfd4b"; depends=[Rcpp]; }; + AnaCoDa = derive2 { name="AnaCoDa"; version="0.1.2"; sha256="0z7agi6992prfvc6y1gvy3j3dvy4x5xfgajgv5j76pns54sj3dl8"; depends=[Rcpp]; }; AnalyzeFMRI = derive2 { name="AnalyzeFMRI"; version="1.1-17"; sha256="1gqhjknqq325m0ryabcdw1r3j5b9xwxg09ndqdcyw4rknc2mdzn1"; depends=[fastICA R_matlab tkrplot]; }; AnalyzeTS = derive2 { name="AnalyzeTS"; version="2.2"; sha256="0ll4g8yzxhricz56vin8hhyplrmvjmkwfldya41vz6y6bwhywnmb"; depends=[MASS TSA tseries TTR urca]; }; AncestryMapper = derive2 { name="AncestryMapper"; version="2.0"; sha256="1fr2y1a5rn7rq8aly94f618kywix32jwysi70nfhaqx8hf4zzprb"; depends=[svd]; }; @@ -148,23 +154,24 @@ in with self; { AnnuityRIR = derive2 { name="AnnuityRIR"; version="1.0-0"; sha256="0yvfqzwhm5nhywfhzkxkfm07c0qi6z21j1cdaypz89qn567aj1d9"; depends=[actuar EnvStats fitdistrplus mc2d tseries]; }; AntAngioCOOL = derive2 { name="AntAngioCOOL"; version="1.2"; sha256="1krwms0y3xppc2y4m0az51wcbh4jq7mlr0jwinp66w8gh4k3qnp2"; depends=[caret rJava rpart RWeka]; }; AntWeb = derive2 { name="AntWeb"; version="0.7"; sha256="1ykfg3zzjdvjppr2l4f26lx00cn5vaqhhz1j1b5yh113ggyl40qw"; depends=[assertthat httr leafletR plyr rjson]; }; - AnthropMMD = derive2 { name="AnthropMMD"; version="2.5.0"; sha256="0pp9ihrkjwzp6zyglkp81ry4fzm1s26r687bhxswx5iz1brzmhdn"; depends=[scatterplot3d shiny smacof]; }; + AnthropMMD = derive2 { name="AnthropMMD"; version="2.5.1"; sha256="0ria1azmxsw54h5zdfvpyw95rcvqkl3v91d80s7pqzjz6zcz7adg"; depends=[scatterplot3d shiny smacof]; }; Anthropometry = derive2 { name="Anthropometry"; version="1.10"; sha256="1rny65070yrdxnny8frp5ryp811h59924z5pfwg0cmd2szxnxnz7"; depends=[archetypes biclust cluster depth FNN ICGE nnls rgl shapes]; }; Aoptbdtvc = derive2 { name="Aoptbdtvc"; version="0.0.2"; sha256="1bygvf8vgzz3wa4485x2xxpk784zmw1nwsjjjysm12brrldh8zzh"; depends=[lpSolve MASS]; }; + ApacheLogProcessor = derive2 { name="ApacheLogProcessor"; version="0.2.3"; sha256="0h4snigh1yhp34vw52h4b6qbh9c4cvwz2cx8fwvbnw6lslmg5cgv"; depends=[doParallel foreach stringr]; }; AppliedPredictiveModeling = derive2 { name="AppliedPredictiveModeling"; version="1.1-7"; sha256="1wi0sw5w1c51rmh9z98wdpk5rgzsylkkb6g019djiwxvj92l99hh"; depends=[CORElearn ellipse lattice MASS plyr reshape2]; }; AquaEnv = derive2 { name="AquaEnv"; version="1.0-4"; sha256="07yx7mbslqgqg7ky67n3xfhskaj7s3w5mvl7xkih48xbsdlmxi4l"; depends=[minpack_lm]; }; - ArArRedux = derive2 { name="ArArRedux"; version="0.2"; sha256="0ql9yx46sgqkc3jd7yaw3vwg8rnykbsvpcahrgc66753kcxih04q"; depends=[]; }; + ArArRedux = derive2 { name="ArArRedux"; version="1.0"; sha256="11h88gnj54cn5fbxf163s8kjqc1q452nzb218fjlwsxxwzaz5gbr"; depends=[]; }; ArCo = derive2 { name="ArCo"; version="0.3-1"; sha256="1afjdmcalx3m19jlvqs83fg5qlds59l5zzg3pzk13qk31r0hz7mk"; depends=[boot glmnet Matrix]; }; ArDec = derive2 { name="ArDec"; version="2.0"; sha256="14niggcq7xlvpdhxhy8j870gb11cpk4rwn9gwsfmcfvh49g58i80"; depends=[]; }; ArchaeoChron = derive2 { name="ArchaeoChron"; version="0.1"; sha256="1qma2432mm73h72g9ah1k02wlcb6yrhc6mpai9nj7v58s126ffxn"; depends=[ArchaeoPhases Bchron coda rjags]; }; ArchaeoPhases = derive2 { name="ArchaeoPhases"; version="1.3"; sha256="0012rjbk3bxf6j7p0skp02yrgqzl903dclnmm7c038f941krjcfq"; depends=[coda DT ggalt ggplot2 ggthemes hdrcde readr shiny shinythemes toOrdinal]; }; ArfimaMLM = derive2 { name="ArfimaMLM"; version="1.3"; sha256="0s5igf703zzvagsbdxf5yv4gn0vdq51b7fvbc8xkgvlmv91yy372"; depends=[fracdiff fractal lme4]; }; ArgumentCheck = derive2 { name="ArgumentCheck"; version="0.10.2"; sha256="0mgx7mzbg2wynixcf9hvs0i9p4zka7c3chrfvjmvvvwwgsy24hkc"; depends=[]; }; - Arothron = derive2 { name="Arothron"; version="1.0.1"; sha256="1zqc73i4bl9mbrijmfix4rl14ljh7sj0j1bdx6d65knscjr522sr"; depends=[compositions doParallel foreach geometry Morpho rgl Rvcg stringr vegan]; }; + Arothron = derive2 { name="Arothron"; version="1.0.2"; sha256="1nfdy0gwxm0xw0lp6245zz0ma481yf0yw4giisqpkkkg56snjjmx"; depends=[compositions doParallel foreach geometry Morpho rgl Rvcg stringr vegan]; }; ArrayBin = derive2 { name="ArrayBin"; version="0.2"; sha256="0jlhcv2d7pmqi32w71nz063ri1yj4i4isr3msnw7ckzvi9r42jwm"; depends=[SAGx]; }; - AsioHeaders = derive2 { name="AsioHeaders"; version="1.11.0-1"; sha256="1g226im9aakqdv5gynsl568w0mxcbfrny9lqid7pl984pq8xr8ks"; depends=[]; }; + AsioHeaders = derive2 { name="AsioHeaders"; version="1.12.1-1"; sha256="0phcagfjxrakkap0kffclcqjspb2rmhq81k934mxgh1qz5a68ksv"; depends=[]; }; AssayCorrector = derive2 { name="AssayCorrector"; version="2.0.0"; sha256="0d2444if5hyfbzyminnspw686r5l4pf9cdj9k48n2539vd61k452"; depends=[kSamples lattice latticeExtra RColorBrewer RVAideMemoire]; }; - AssetCorr = derive2 { name="AssetCorr"; version="1.0.1"; sha256="1ls08p120gn7mv7nfslc08dw159d001z57xx9wkyfz7v8r27qhsy"; depends=[boot ggplot2 mvQuad mvtnorm numDeriv Rdpack VineCopula]; }; + AssetCorr = derive2 { name="AssetCorr"; version="1.0.3"; sha256="0xcyj9xw895p4j03j9c76k7ylhkmf777akg4m90av12ad05njjbv"; depends=[boot ggplot2 mvQuad mvtnorm numDeriv Rdpack VineCopula]; }; AssetPricing = derive2 { name="AssetPricing"; version="1.0-1"; sha256="0pbb1362dgdipbj3h50ykissl3gdqf1j1mpq53ixprvyc966c5h4"; depends=[deSolve polynom]; }; AssocAFC = derive2 { name="AssocAFC"; version="1.0.2"; sha256="1rjiiir472dnr15xyvpn81s62nf01gl70khr8mrni65ssp5m30fb"; depends=[CompQuadForm]; }; AssocTests = derive2 { name="AssocTests"; version="0.0-4"; sha256="1fhqzbj4aj4srkiba79w8wdyc7yy701izklxqqa7lsifnca6gn4j"; depends=[cluster combinat fExtremes mvtnorm]; }; @@ -185,23 +192,24 @@ in with self; { BACCT = derive2 { name="BACCT"; version="1.0"; sha256="0bpm4l27vbblzi2hhfbjw2af3ic2jbnyghkvchpq8ww43k8068iv"; depends=[ggplot2 reshape2 rjags]; }; BACprior = derive2 { name="BACprior"; version="2.0"; sha256="1z9dvjq4lr99yp6c99bcv6n5jiiwfddfz4izcpfnnyvagfgizr8p"; depends=[boot leaps mvtnorm]; }; BAEssd = derive2 { name="BAEssd"; version="1.0.1"; sha256="04wkhcj4wm93hvmfnnzryswaylnxz5qsgnqky9lsx4jqhvg340l6"; depends=[mvtnorm]; }; - BALCONY = derive2 { name="BALCONY"; version="0.2.7"; sha256="1xdhldr6y3hrnp4g3zpplfcgiv0n8ci792hkaps9l47799vww03r"; depends=[Biostrings dplyr progress readr Rpdb scales seqinr]; }; - BAMBI = derive2 { name="BAMBI"; version="2.0.0"; sha256="09ib729h3wz1gbadsrlj2y05xbdwms9m4dhwmq9dfzm9v9qpw9n0"; depends=[bridgesampling coda future future_apply gtools label_switching lattice loo mvtnorm qrng RColorBrewer Rcpp RcppArmadillo rootSolve]; }; + BALCONY = derive2 { name="BALCONY"; version="0.2.8"; sha256="0qz7kzwglln9xa2ybxl72kkdw3ysc4wx1wxl94mzkgv01sf1bdhb"; depends=[Biostrings dplyr progress readr Rpdb scales seqinr]; }; + BALD = derive2 { name="BALD"; version="1.0.0-3"; sha256="1azyqami07g3ax60j0ws3d1qha65k0svn2v5c9pisni0qch5xql0"; depends=[lattice logspline rjags]; }; + BAMBI = derive2 { name="BAMBI"; version="2.0.1"; sha256="0mmigmgh37jbjnaafnisv7i30nfa605r2k3w22mpg1n3lcjdpmdk"; depends=[bridgesampling coda future_apply gtools label_switching lattice loo mvtnorm qrng RColorBrewer Rcpp RcppArmadillo rootSolve]; }; BAMMtools = derive2 { name="BAMMtools"; version="2.1.6"; sha256="01mb40w3g0xy93pl9064ky8kd46sa7qlz6by1r6kchcfhajx8plv"; depends=[ape gplots Rcpp]; }; BANEScarparkinglite = derive2 { name="BANEScarparkinglite"; version="0.1.2"; sha256="0yxsgk4p7i8arjkchsiml6lx97inpmaihb61787vcl8kxyx7v6wr"; depends=[dplyr httr lubridate RCurl readr rvest XML xml2 zoo]; }; BANOVA = derive2 { name="BANOVA"; version="1.1.1"; sha256="11cvf7wjip1vn5qn9hwxvdh98i8li9ijydfywf2ks2hls2430qbk"; depends=[coda rjags rstan runjags]; }; - BART = derive2 { name="BART"; version="1.8"; sha256="1nb1xj2v8d54fw4fppfsvai3q8csavqiksrybsc7imb4cfvdkw9h"; depends=[Rcpp survival]; }; - BAS = derive2 { name="BAS"; version="1.5.1"; sha256="0p1pjv8nx3jkjn8j9r87lngwgwxra3hh8qj6qklppnkznly533hr"; depends=[]; }; + BART = derive2 { name="BART"; version="1.9"; sha256="16k5cn81bywm9njvfnnid0dhq7fbmf875v4z7a3a90p0jxrgr902"; depends=[Rcpp survival]; }; + BAS = derive2 { name="BAS"; version="1.5.2"; sha256="1h8n7599svxyvmqd6mamj75w8i1li7q4fscs50a8irv9frhv5979"; depends=[]; }; BASIX = derive2 { name="BASIX"; version="1.1"; sha256="18dkvv1iwskfnlpl6xridcgqpalbbpm2616mvc3hfrc0b26v01id"; depends=[]; }; BASS = derive2 { name="BASS"; version="0.2.2"; sha256="1q3sihp2iv1ikggzgd2k3vh2myz8bz31rzlaavw0n84d0h1zjxy2"; depends=[]; }; - BASiNET = derive2 { name="BASiNET"; version="0.0.3"; sha256="0kcmc4jpiwmdydbyjfm1jx4ravxkqzvqca3p5gp26nx14xglm9hi"; depends=[Biostrings igraph randomForest rJava rmcfs RWeka]; }; - BAT = derive2 { name="BAT"; version="1.5.6"; sha256="0m6yfxymhzi8n2l421ngy6cz3qa5v7yrd1jhpi8ymlnf8dysd57x"; depends=[nls2 raster spatstat vegan]; }; + BASiNET = derive2 { name="BASiNET"; version="0.0.4"; sha256="0pmn4znqhpav729ai7zr027a7sx6bz2lmlk086crmwm1fnwipqq4"; depends=[Biostrings igraph randomForest rJava rmcfs RWeka]; }; + BAT = derive2 { name="BAT"; version="1.6.0"; sha256="056ygqpbqznysjzg4z96wrgfa4bwp1lf5qrv9bp6692r3ldq0485"; depends=[hypervolume nls2 raster spatstat vegan]; }; BAYESDEF = derive2 { name="BAYESDEF"; version="0.1.0"; sha256="030xskgqqg0n85mphjv32ks4ysvxb36f6ayy0176gps14jhmhcp7"; depends=[glmnet gWidgets readxl REdaS]; }; BAYSTAR = derive2 { name="BAYSTAR"; version="0.2-9"; sha256="0crillww1f1jvhjw639sf09lpc3wpzd69milah143gk9zlrkhmz2"; depends=[coda mvtnorm]; }; - BAwiR = derive2 { name="BAwiR"; version="1.1"; sha256="1wdwvghdhlld4iim49ia3k3g1rxrji8qh6jy63klglq6hb1rwx6c"; depends=[Anthropometry dplyr ggplot2 ggthemes hrbrthemes httr lubridate magrittr plyr purrr reshape2 rvest rworldmap scales stringi stringr tidyr xml2]; }; + BAwiR = derive2 { name="BAwiR"; version="1.1.3"; sha256="0p5hjv2c86y53nmzmrrvg5d706y760r19aiqcc6jqzj9rkq3iivw"; depends=[Anthropometry dplyr ggplot2 ggthemes hrbrthemes httr lubridate magrittr plyr purrr reshape2 rvest rworldmap scales stringi stringr tidyr xml2]; }; BB = derive2 { name="BB"; version="2014.10-1"; sha256="1lig3vxhyxy8cnic5bczms8pajmdvwr2ijad1rkdndpglving7x0"; depends=[quadprog]; }; BBEST = derive2 { name="BBEST"; version="0.1-6"; sha256="1hvgi3679ixpq0c5qbxhkp1j0953k3lklglgxrq9mz2ry6z9n038"; depends=[DEoptim ggplot2 reshape2 shiny wmtsa]; }; - BBI = derive2 { name="BBI"; version="0.2.0"; sha256="1mv6sh853y8p4by76637bky6yl57qyhmgqmd2n2k7r0cxg8hprcx"; depends=[vegan]; }; + BBI = derive2 { name="BBI"; version="0.3.0"; sha256="167sndfp3776p8n9zdpihc9xhqqi8wygzpl49dzkfj53gwa77rnn"; depends=[vegan]; }; BBMM = derive2 { name="BBMM"; version="3.0"; sha256="1cvv786wf1rr5906qg1di2krrv5jgw3dnyl8z2pvs8jyn0kb3fkj"; depends=[]; }; BBMV = derive2 { name="BBMV"; version="2.1"; sha256="11d4wd1zx99hrhwagw73jkk088rz5vgkjml6mckssc2iqvhj1dc9"; depends=[ape]; }; BBRecapture = derive2 { name="BBRecapture"; version="0.1"; sha256="05xzp5zjmkh0cyl47qfsz0l8drg8mimssybhycc4q69aif9scqxb"; depends=[HI lme4 locfit secr]; }; @@ -211,36 +219,37 @@ in with self; { BCC1997 = derive2 { name="BCC1997"; version="0.1.1"; sha256="1lqbivjkc7858jn54av1v9bzp0as43klgndbzkr59dc3l128xp12"; depends=[]; }; BCDating = derive2 { name="BCDating"; version="0.9.7"; sha256="0z3a95sc481p0n33mhg7qlsf1jynbm1vbfds0n03bsjrwvqkzpb2"; depends=[]; }; BCE = derive2 { name="BCE"; version="2.1"; sha256="0dqp08pbq7r88yhvlwgzzk9dcdln7awlliy5mfq18j5jhiy7axiz"; depends=[FME limSolve Matrix]; }; - BCEA = derive2 { name="BCEA"; version="2.2-5"; sha256="0jiizwnxycbz9x8fmkcw3rcjkgg5b9fawyddf8swvx23cnfm6z8z"; depends=[MASS]; }; + BCEA = derive2 { name="BCEA"; version="2.2-6"; sha256="1h1hgr0w6sidxfm58x6xz3i66prk5cxw6ldgfznr28pvrbgi5wsi"; depends=[MASS]; }; BCEE = derive2 { name="BCEE"; version="1.2"; sha256="08jsnsy7l182n0gy2jy0l9a7grr62g57gz3217fzapk2im2q648b"; depends=[BMA leaps Rcpp RcppArmadillo]; }; BCRA = derive2 { name="BCRA"; version="2.0"; sha256="1g0iix3ik2gsxpz6zp5fz2ka1y5xybs6x3r42ssnlffcmmdd9bsw"; depends=[]; }; BCSub = derive2 { name="BCSub"; version="0.5"; sha256="0c8dlxsx23qfyygmajg2amj78ax01kb3808d9hvy7g3hkgp2i2fp"; depends=[MASS mcclust nFactors Rcpp RcppArmadillo]; }; BCellMA = derive2 { name="BCellMA"; version="0.3.4"; sha256="1njprs7ksv0w18ffs0agz0290aa2akw48225iaa3bjhbl08dpidl"; depends=[ggplot2 reshape2]; }; BCgee = derive2 { name="BCgee"; version="0.1"; sha256="0ad0dj2ymgvkmcmq3jlpmn0pgigdql0xgvcwsbpdydv33a6snr04"; depends=[]; }; BClustLonG = derive2 { name="BClustLonG"; version="0.1.2"; sha256="0w35pwv3y00pmi4qjnzii3q44k7lk13x0cmh1zq3cl42gpi31p7f"; depends=[lme4 MASS mcclust Rcpp RcppArmadillo]; }; + BDP2 = derive2 { name="BDP2"; version="0.1.3"; sha256="14m85sigx6hk0qzhfgih43m2lxp9xczmp9g3z4pping6msbnbdrz"; depends=[rmarkdown shiny shinyBS]; }; BDWreg = derive2 { name="BDWreg"; version="1.2.0"; sha256="07j6dy69q1as1nwgp2790wzpzmjich2256cddhl7n3h2rs1dja74"; depends=[coda doParallel DWreg foreach MASS]; }; - BDgraph = derive2 { name="BDgraph"; version="2.51"; sha256="08cc9ab7ipkxm5jxg5qyq40l58jqf5yg02igxi3xbqrb946ynqqx"; depends=[igraph Matrix]; }; - BE = derive2 { name="BE"; version="0.1.0"; sha256="1mav5hvzsggh13szny0s0iy44di2jna523z8cjcy89s7nv2fqaag"; depends=[]; }; + BDgraph = derive2 { name="BDgraph"; version="2.52"; sha256="11if4abx2y0x92qwadl34d44qg1qlhmgdbhfqabhirbng553szcv"; depends=[igraph Matrix]; }; + BE = derive2 { name="BE"; version="0.1.1"; sha256="1ldzj1fvbgmnp0cn7g348md2xskm2q5b7y6l1sm3pa2am8jc7ixa"; depends=[rtf]; }; BEACH = derive2 { name="BEACH"; version="1.2.1"; sha256="0a6xwczw3d2jnksb5lpf7j859pnyfxcab4kfv4v7lmf9iasbyyf5"; depends=[devtools DT haven plyr readxl rJava rtf sas7bdat shiny WriteXLS xtable]; }; BEDASSLE = derive2 { name="BEDASSLE"; version="1.5"; sha256="1bz3lr0waly9vj9adwhmgs3lq7zjdkcbvm3y9rnn72qlrwmv5fbn"; depends=[emdbook MASS matrixcalc]; }; - BEDMatrix = derive2 { name="BEDMatrix"; version="1.4.0"; sha256="0aha33skksh45fx248lx6v8cxwgkiripw3avspb8arbld9rmqwxn"; depends=[BH crochet Rcpp]; }; + BEDMatrix = derive2 { name="BEDMatrix"; version="1.4.1"; sha256="1g92ayc6igz4qsf8g05m5628za4ipl2hy51khar0d54pkys5l1vw"; depends=[BH crochet Rcpp]; }; BEQI2 = derive2 { name="BEQI2"; version="2.0-0"; sha256="19q29kkwww5hziffkm2yx7n4cpfcsyh0z4mljdcnjkwfp732sjig"; depends=[jsonlite knitr markdown plyr reshape2 xtable]; }; BEST = derive2 { name="BEST"; version="0.5.1"; sha256="0yx3bkaaly0lriyd5xr7aay4c381a5iwanfixz9v37cmvs64rs4s"; depends=[coda HDInterval rjags]; }; - BETS = derive2 { name="BETS"; version="0.4.4"; sha256="0cfndahvqdma95sbyf4r3bhf6hxplkx7dmpcx41s1mqcr0bgnxvp"; depends=[DBI digest dplyr DT dygraphs forecast foreign ggplot2 grnn htmltools httr lubridate miniUI plotly rjson rmarkdown RMySQL rstudioapi rvest seasonal shiny sqldf stringr urca webshot xml2 zoo]; }; - BGData = derive2 { name="BGData"; version="1.0.0"; sha256="0xd7xpnvhpyvv6caxyif7wa25llvrnyzmmk4z6rp7absjqbz2alc"; depends=[BEDMatrix bigmemory bit ff LinkedMatrix symDMatrix]; }; - BGGE = derive2 { name="BGGE"; version="0.6.3"; sha256="0i7dz1j2p3nmqad6ja5b45maa3a1wn1gsh1g7sahyqr72s2bvvkn"; depends=[]; }; - BGLR = derive2 { name="BGLR"; version="1.0.5"; sha256="14a979rnasaklkfafzpkhr6mqv0ga7fsfxq63scpnlwa2aasgn83"; depends=[]; }; + BETS = derive2 { name="BETS"; version="0.4.9"; sha256="0daixk7mqmk2jq35i7mjaslz11gxbnnjgwxfvj8x1s88vz9l74sm"; depends=[DBI digest dplyr DT dygraphs forecast foreign ggplot2 grnn htmltools httr lubridate miniUI plotly rjson rmarkdown RMySQL rstudioapi rvest seasonal shiny sqldf stringr urca webshot xml2 zoo]; }; + BGData = derive2 { name="BGData"; version="2.0.0"; sha256="1jjzk81ipc7xidk21721pi761c7afnvf3qi91fv21q5ihkg5glvi"; depends=[BEDMatrix bigmemory bit crochet ff LinkedMatrix symDMatrix synchronicity]; }; + BGGE = derive2 { name="BGGE"; version="0.6.5"; sha256="1h76c40y45xhf2vp9g0q5j9lfwh16q9axbk5c9aqn4md008xr1j2"; depends=[]; }; + BGLR = derive2 { name="BGLR"; version="1.0.7"; sha256="061y08n4z6p013r0cqb9ff4myra5cchp6s2fgdhkw1sdlwy7ban7"; depends=[]; }; BGPhazard = derive2 { name="BGPhazard"; version="1.2.3"; sha256="1yp92y5y3xh0hb1ring6jrma8g4q6210hm9572j8ji1jkafzxjw1"; depends=[survival]; }; BGSIMD = derive2 { name="BGSIMD"; version="1.0"; sha256="0xkr56z8l72wps7faqi5pna1nzalc3qj09jvd3v9zy8s7zf5r7w4"; depends=[]; }; BH = derive2 { name="BH"; version="1.66.0-1"; sha256="14kab6wp0c27d8x4jqyf065p4bj210s9b67c0bfsfjnp29aypn8p"; depends=[]; }; BHH2 = derive2 { name="BHH2"; version="2016.05.31"; sha256="1m4fcx979nbm97hi89vbjjix0sx6qhdzs486risck9bi7yzih5k4"; depends=[]; }; BHMSMAfMRI = derive2 { name="BHMSMAfMRI"; version="1.1"; sha256="1qygizn2np9amkm1f1332zp9ab9ky423plr9lahgwzdxn1c2c5c2"; depends=[AnalyzeFMRI fmri wavethresh]; }; - BHTSpack = derive2 { name="BHTSpack"; version="0.4"; sha256="15a1xx2j6s94jrhlbbkriqzs7wfbh2nkz564zvmn20czmaf7v5iq"; depends=[R2HTML xtable]; }; + BHTSpack = derive2 { name="BHTSpack"; version="0.5"; sha256="1sz99sgxhiajxca5bx2ns9g9qs9ymsvh8i5882nlp7c78qxmqc4g"; depends=[R2HTML xtable]; }; BICORN = derive2 { name="BICORN"; version="0.1.0"; sha256="0mqk8vgp6jdk7f0paa06yqlibkd1y3vs69pg7i9mkvxmda7p4nkq"; depends=[]; }; BIEN = derive2 { name="BIEN"; version="1.2.3"; sha256="0p23kahba55gkk6wx10ii6vrni3b7ia2a4jb64ww4kwp86bknx3d"; depends=[ape DBI rgdal rgeos RPostgreSQL sp]; }; - BIFIEsurvey = derive2 { name="BIFIEsurvey"; version="2.5-44"; sha256="16mgbf2jpz3fkn1gb8xcc8h45k8p74sq5gp2kk8q2g3z7gg697xh"; depends=[miceadds mitools Rcpp RcppArmadillo survey TAM]; }; + BIFIEsurvey = derive2 { name="BIFIEsurvey"; version="2.191-12"; sha256="13my1yz7q40fg79m1klfqi0ngbfmkj0k6p8a1fvzl11xcwiszn44"; depends=[miceadds mitools Rcpp RcppArmadillo survey TAM]; }; BIGDAWG = derive2 { name="BIGDAWG"; version="2.1"; sha256="0zvy5sl94qi20gdrnxb2lmadfy7p0wqfngjsf6jc2cgwyzk4gnrj"; depends=[haplo_stats httr knitr rmarkdown XML]; }; - BIGL = derive2 { name="BIGL"; version="1.2.0"; sha256="1n14ar765iqafi8ckpghxrafivmpf583yckfxk07haz4186klvss"; depends=[ggplot2 MASS minpack_lm numDeriv progress rgl robustbase scales]; }; + BIGL = derive2 { name="BIGL"; version="1.2.2"; sha256="0zrp6mrsjmac2z8syh8216zcr7yy60y4yr2xfvmd4cxdnsc198hr"; depends=[ggplot2 MASS minpack_lm numDeriv progress rgl robustbase scales]; }; BINCOR = derive2 { name="BINCOR"; version="0.2.0"; sha256="0x2s82jql429shk70bhjdy9kamz8dz5ymsxj6kp8ga1711bpwyq6"; depends=[pracma]; }; BIOM_utils = derive2 { name="BIOM.utils"; version="0.9"; sha256="0xckhdvf15a62awfk9rjyqbi6rm7p4awxz7vg2m7bqiqzdll80p7"; depends=[]; }; BIOMASS = derive2 { name="BIOMASS"; version="1.2"; sha256="1d9rwgh0ws27yd0p2la7pn49sb71lh9bg4f42fpx448ah8dimw17"; depends=[httr jsonlite minpack_lm msm raster]; }; @@ -249,19 +258,21 @@ in with self; { BKPC = derive2 { name="BKPC"; version="1.0.1"; sha256="17gmhf6qq8jn2xzkqvjq60xzy0slz6kgfpd0d6hlpnf30ww7q923"; depends=[kernlab]; }; BLCOP = derive2 { name="BLCOP"; version="0.3.1"; sha256="1qfkljw5b1k4b5jd08hw6dsmvgr7vg3kjyib5s13q0mkxvclasym"; depends=[fBasics fMultivar fPortfolio MASS quadprog RUnit timeSeries]; }; BLModel = derive2 { name="BLModel"; version="1.0.2"; sha256="0l5f2v5ggadmrci3qhhmxm3j9i6jii0anq5rv5vk50y2qzii2q15"; depends=[]; }; - BLPestimatoR = derive2 { name="BLPestimatoR"; version="0.1.5"; sha256="0wnxfyl8hz1a0k33v5nc3j1ziwcv1fnw8639l0xv92p5rn7n5nc5"; depends=[mvQuad numDeriv randtoolbox Rcpp ucminf]; }; - BLR = derive2 { name="BLR"; version="1.4"; sha256="0wy3c8nnzkdhwb5s1ygdid47hpdx72ryim36mnicrydy0msjivja"; depends=[SuppDists]; }; + BLOQ = derive2 { name="BLOQ"; version="0.1-0"; sha256="1ag0dy3cjdxhlspmzfdnpli030g6gwac50n5s30igcyrmw6kl4hf"; depends=[maxLik mvnmle mvtnorm]; }; + BLPestimatoR = derive2 { name="BLPestimatoR"; version="0.2.5"; sha256="19kxvmwfa9mzq2lxlszai8zbag13m5dp600xhvwjjlmc5pg4fs3g"; depends=[Formula mvQuad numDeriv randtoolbox Rcpp RcppArmadillo]; }; + BLR = derive2 { name="BLR"; version="1.5"; sha256="1aj4qs0zjca2ifx3y4a0s6c59lbsgracili2an5nr2rxnsl10aw6"; depends=[SuppDists]; }; BLRPM = derive2 { name="BLRPM"; version="1.0"; sha256="15q0jkw4swz35c58nv23k8g1dy1kkbqh5aydjck7pd0fmppqrhpx"; depends=[R6]; }; BLSM = derive2 { name="BLSM"; version="0.1.0"; sha256="02xidwp91rh34rcqd0q552wzm2j80axs1nnwwv2aj04g96lf7myj"; depends=[Rcpp RcppEigen]; }; - BMA = derive2 { name="BMA"; version="3.18.8"; sha256="1a32ghn17ymb3zdh9xv6zvqcxc81m4y478mk6z9bfndq7ihy1ih5"; depends=[inline leaps robustbase rrcov survival]; }; + BMA = derive2 { name="BMA"; version="3.18.9"; sha256="1lwgjswjiiyzxjpbpr61lcppgkz2d6m3vhgz7qpg33jg2mvdkvjy"; depends=[inline leaps robustbase rrcov survival]; }; BMAmevt = derive2 { name="BMAmevt"; version="1.0.1"; sha256="1krx8isj2wp3panjcbc2ysrc2pxz2casj12qq9p18imaa326l53y"; depends=[coda]; }; - BMRBr = derive2 { name="BMRBr"; version="0.1.0"; sha256="1z54annplzydnxvwd0rkhcw5rmfx8r99k28ld5rgh22xq3zdq825"; depends=[rvest xml2]; }; + BMRBr = derive2 { name="BMRBr"; version="0.2.0"; sha256="0v2ysap5jfkq9fc5blqlfhsv2bs8rqybmp5z4q3g6y3y7qzhypjw"; depends=[rvest xml2]; }; BMRV = derive2 { name="BMRV"; version="1.32"; sha256="1j1cwjk3l7f06nqdwrqdyhzm43bb8hj5wgdd14zc1grxyfc9ya95"; depends=[BH]; }; BMS = derive2 { name="BMS"; version="0.3.4"; sha256="0z3mk1xd1fphf80kdbashkn04jwsr2bghms4d7nav3pw73q41wql"; depends=[]; }; + BMSC = derive2 { name="BMSC"; version="0.1.1"; sha256="0dpyb01bmfa9qgrj60hdmbgp0mln96zx7ndiljwz7ylpg8myj8sl"; depends=[BH dplyr ggplot2 loo R_utils Rcpp RcppEigen rstan rstantools StanHeaders]; }; BMT = derive2 { name="BMT"; version="0.1.0.3"; sha256="1vdah5bsn41s2qriq15xi7dw9qzngaacmn5gk6yc7hi89dwyy3yj"; depends=[fitdistrplus partitions]; }; BMhyb = derive2 { name="BMhyb"; version="1.5.2"; sha256="0sf12xibr22i3pqdb7zay1mmgfnvqxdlimsbd8y5pi4ybiqz8bl8"; depends=[ape corpcor DEoptim geiger lhs Matrix mvtnorm numDeriv phylobase phytools TreeSim viridis]; }; BMhyd = derive2 { name="BMhyd"; version="1.2-8"; sha256="14pv5f621zq5x9i408zjm8k80hcsabkjpdf86gk3ylgw5yqcivrx"; depends=[ape corpcor geiger mvtnorm numDeriv phylobase phytools TreeSim]; }; - BMisc = derive2 { name="BMisc"; version="1.2.0"; sha256="0mfwa3614xgvlwl44r9p3ic34z9q9qilnhvb8p95s40xi622wphy"; depends=[formula_tools plm]; }; + BMisc = derive2 { name="BMisc"; version="1.3.1"; sha256="0wh17bf1ii6zan09n59cf9257nb60nh08ig01id9k0bvm9f14ay6"; depends=[formula_tools plm]; }; BNDataGenerator = derive2 { name="BNDataGenerator"; version="1.0"; sha256="17zi83jhpn9ygavkpr9haffvd4622sca18jzzxxxmfq0ilrj201g"; depends=[]; }; BNN = derive2 { name="BNN"; version="1.0.2"; sha256="13h9xqfdqnc9d8brx1xlmvb4nrkpwncwjz98y7i3wijih85wkikd"; depends=[mvtnorm]; }; BNPMIXcluster = derive2 { name="BNPMIXcluster"; version="1.2.4"; sha256="06s0cs3anbby93n7pjcin9195agfzfq9im6f9k7ih3cbg8mzfaqy"; depends=[gplots MASS matrixcalc mvtnorm plyr Rcpp RcppArmadillo truncnorm]; }; @@ -269,10 +280,12 @@ in with self; { BNPTSclust = derive2 { name="BNPTSclust"; version="1.1"; sha256="1zmxwg6zn3nqqm1sw2n4pvq47mv7ygb4lf1c6yhn3xaf1rqmf26s"; depends=[MASS mvtnorm]; }; BNPdensity = derive2 { name="BNPdensity"; version="2017.03"; sha256="0anpi75wwx91dbm937ydgcpd8wchm0nyciy4xdhppsvzq9v3d2hp"; depends=[]; }; BNSL = derive2 { name="BNSL"; version="0.1.3"; sha256="1918dc73gasac45kzcf4pxvl8iaawzkqdi03ny0napbjr3z8rss2"; depends=[bnlearn igraph Rcpp]; }; - BNSP = derive2 { name="BNSP"; version="2.0.6"; sha256="0phi41khw525nsrizxak933j2hlhpkgdskvwv8yqljhvyamxgaql"; depends=[coda cubature Formula ggplot2 gridExtra plot3D plyr threejs]; }; + BNSP = derive2 { name="BNSP"; version="2.0.8"; sha256="03pl4rvcrsd471nb56rsichzyay57ij1pqn3vvi3dpnr6rnfv4xm"; depends=[coda cubature Formula ggplot2 gridExtra mgcv plot3D plyr threejs]; }; BOG = derive2 { name="BOG"; version="2.0"; sha256="0lz5af813b67hfl4hzcydn58sjhgn5706n2h44g488bks928k940"; depends=[DIME hash]; }; - BOIN = derive2 { name="BOIN"; version="2.6.3"; sha256="0hvx75zjb5bj005ggj9j67p9f8hpq8p6c0ihidf3avfrirl8g98p"; depends=[Iso]; }; - BPEC = derive2 { name="BPEC"; version="1.2.1"; sha256="142x0iw3sanvqm0n2hfba8pwndfk8l5qzhgpca9gcya7wkcmmmf7"; depends=[ape coda fields ggmap ggplot2 igraph maptools mvtnorm OpenStreetMap phytools R2G2 sp]; }; + BOIN = derive2 { name="BOIN"; version="2.6.4"; sha256="0p1205pxa5a9sbw88fm8lbvzgzyq3mf62lsp0l2c0sfsvcfpydkg"; depends=[Iso]; }; + BPEC = derive2 { name="BPEC"; version="1.3.0"; sha256="0chdp7g75a6hajq7h1lbl0zima22myah9a66m06zga274plakdq2"; depends=[ape coda fields ggmap ggplot2 igraph maptools mvtnorm OpenStreetMap phytools sp]; }; + BRETIGEA = derive2 { name="BRETIGEA"; version="1.0.0"; sha256="176z7ajyfcfljv36d2sa15cvw047rsir3gn0l4lxmcyliw93r4lv"; depends=[]; }; + BRISC = derive2 { name="BRISC"; version="0.1.0"; sha256="0fkh7wv9lf7fckh5xn4xygh6k792j8j6ax7kwqw7m4qqvl7gds44"; depends=[matrixStats pbapply RANN rdist]; }; BRugs = derive2 { name="BRugs"; version="0.9-0"; sha256="0f0v30mvfw97vfwzkjpqzf2894b2yhksja0xhpranprk135srxp0"; depends=[coda]; }; BSDA = derive2 { name="BSDA"; version="1.2.0"; sha256="0gs33yyca45jd4f5k5f7qid4ayw2rnl2wl7a6m7vf39dfx7ympm2"; depends=[e1071 lattice]; }; BSGS = derive2 { name="BSGS"; version="2.0"; sha256="08m8g4zbsp55msqbic4f17lcry07mdn0f5a61zdcy2msn2ihzzf9"; depends=[batchmeans MASS plyr pscl]; }; @@ -291,7 +304,7 @@ in with self; { BUCSS = derive2 { name="BUCSS"; version="1.0.0"; sha256="133wsv784abrs6s1rhdi65qdrw5wx806r6pf76g3vbsf2qhk51qb"; depends=[]; }; BVS = derive2 { name="BVS"; version="4.12.1"; sha256="111g61bpwh80v6gy44q087swcrnnnzdcibm22pzzi9jsfphy6l0c"; depends=[haplo_stats MASS msm]; }; BVSNLP = derive2 { name="BVSNLP"; version="1.1.5"; sha256="1m6cpxm6pd831472qzj370f6q9sf416zd6ixphg3yqvvakgdznv8"; depends=[doParallel foreach Rcpp RcppArmadillo RcppEigen RcppNumerical]; }; - BWStest = derive2 { name="BWStest"; version="0.2.1"; sha256="1kwd1s1dd21qca31np49aql839j8325y8bnxlcq84nw48vqv0jgc"; depends=[memoise Rcpp]; }; + BWStest = derive2 { name="BWStest"; version="0.2.2"; sha256="02amzlfprmw5pyis0dg0kg0x8xqh50a4vfdcxxmklrzik3b1vzzs"; depends=[memoise Rcpp]; }; BaBooN = derive2 { name="BaBooN"; version="0.2-0"; sha256="145q2kabjks2ql3m48sfjis5y35l8rcqnr5s176viv9yhfafn351"; depends=[coda Hmisc MASS nnet Rcpp RcppArmadillo]; }; BaM = derive2 { name="BaM"; version="1.0.1"; sha256="0y8m6mhghlrp379swj9cfrzqcdr3a7y29mx4d6zld4is00wdw16b"; depends=[coda dlm MASS mice nnet]; }; BaPreStoPro = derive2 { name="BaPreStoPro"; version="0.1"; sha256="0zyyyrr5h8dhjsmgaii8jmb8ignvixpc9nzbfishw9yymjswvm57"; depends=[]; }; @@ -299,24 +312,25 @@ in with self; { BaTFLED3D = derive2 { name="BaTFLED3D"; version="0.2.11"; sha256="0gab9iz1ra72hw8j31n97ysyr3cclhgvdxriyjk8wwv2nrmbw12h"; depends=[foreach iterators R6 RColorBrewer rTensor]; }; BacArena = derive2 { name="BacArena"; version="1.7"; sha256="137n3nyz68v912c5nhq1qslgifb7k797f5sz567smhimzjhx842f"; depends=[deSolve ggplot2 glpkAPI igraph Matrix plyr Rcpp RcppArmadillo RcppEigen ReacTran reshape2 sybil]; }; BalanceCheck = derive2 { name="BalanceCheck"; version="0.1"; sha256="09mkssic173glgcn592cb6zmz80kndggqc4hc800f91xnfql0332"; depends=[ade4 mvtnorm]; }; - BalancedSampling = derive2 { name="BalancedSampling"; version="1.5.2"; sha256="0a4mb5lwjcy5d3h0ypsqmqniqx3dm64mssj65apgl48wqbm6zvv0"; depends=[Rcpp]; }; - Ball = derive2 { name="Ball"; version="1.2.0"; sha256="1x3l3bg4mn5kvm98p1ypn7gi61q2wm1224n9d99x1pms1iqhx4zv"; depends=[gam survival]; }; + BalancedSampling = derive2 { name="BalancedSampling"; version="1.5.4"; sha256="01vnq8n0w9h7p5xpvfdhipdqcj82in0zhj61kvcmz7jx9grx22vi"; depends=[Rcpp SamplingBigData]; }; + Ball = derive2 { name="Ball"; version="1.3.0"; sha256="16rb4yj08dbnk3yj1d0nhr9iw2kgzjzp5cbwy8kcwc3ndhaxwdpa"; depends=[gam mvtnorm survival]; }; BarBorGradient = derive2 { name="BarBorGradient"; version="1.0.5"; sha256="0g2g7hrm23as1xbj79g48r8sj3gsj66fmi895jqlqfbqrl2fl7a5"; depends=[]; }; BarcodingR = derive2 { name="BarcodingR"; version="1.0-2"; sha256="1mn5rdax8v1s2z3apk9z0kzy4hw19m8ql6j91l6wd29g2n2bjqxx"; depends=[ape class nnet sp]; }; Barnard = derive2 { name="Barnard"; version="1.8"; sha256="1ki58hjs5kpmp76kwj1qi6hwmdvjphqb1lvrlhnmkgqxg4hw4vqg"; depends=[]; }; Barycenter = derive2 { name="Barycenter"; version="1.3.1"; sha256="0yhc0wwjqms569gnm8z2l9hgcbw8lyy437ynkij47pa4c1a1qvjy"; depends=[Rcpp RcppArmadillo]; }; BatchExperiments = derive2 { name="BatchExperiments"; version="1.4.2"; sha256="0zvcpgzhbna6p37jlf57j7mzrvh5xs5w17janmv9v4210cpbzi1q"; depends=[backports BatchJobs BBmisc checkmate data_table DBI RSQLite]; }; - BatchGetSymbols = derive2 { name="BatchGetSymbols"; version="2.1"; sha256="1mc35y3zxmijgywfd1qhvlpb66rzc8n6j3ynvfrg5c7z8j8592h3"; depends=[curl dplyr quantmod rvest stringr tidyr XML]; }; + BatchGetSymbols = derive2 { name="BatchGetSymbols"; version="2.2"; sha256="0xssci49wf3jg8hhlycf9jy8mdxlizxh1hwr0xacwsbf38wvnas3"; depends=[curl dplyr lubridate quantmod rvest stringr tidyr XML]; }; BatchJobs = derive2 { name="BatchJobs"; version="1.7"; sha256="035658marnw57p4f38g99rwmvmb6hpbq0fhlxp3qbw22zfnnkvs9"; depends=[backports BBmisc brew checkmate data_table DBI digest RSQLite sendmailR stringi]; }; BatchMap = derive2 { name="BatchMap"; version="1.0.2.0"; sha256="0v3k4xrmsbyhzgmph8xna11dgpp10yxqmss95asrj6n814jxj19b"; depends=[ggplot2 Rcpp RcppArmadillo reshape2]; }; BayClone2 = derive2 { name="BayClone2"; version="1.1"; sha256="1wprdj22zh8fwqawcv4m2n2y7sqwh2f6m9b0cq0rp4ll774yz30i"; depends=[combinat]; }; BayHap = derive2 { name="BayHap"; version="1.0.1"; sha256="0xqnl2cbf0pyjlpywyy0j4mwknfn8msz4s719dsri3r7hvn9m6kd"; depends=[boa]; }; BayHaz = derive2 { name="BayHaz"; version="0.1-3"; sha256="08ilghlkgyma5758yw7mdgqycqcillqmx73knzzdlg2kzc77dvg6"; depends=[]; }; - BayLum = derive2 { name="BayLum"; version="0.1.2"; sha256="172ynm4z1m8dc954q4x9vwc2lyxqbwmqaxmz8v49jm8r2ifv7h8c"; depends=[ArchaeoPhases coda hexbin Luminescence rjags]; }; + BayLum = derive2 { name="BayLum"; version="0.1.3"; sha256="0hina84s8ax01zpnji4jqqkdap0phvxr78s4rnab0407xrydbf0w"; depends=[ArchaeoPhases coda hexbin KernSmooth Luminescence rjags]; }; BaySIC = derive2 { name="BaySIC"; version="1.0"; sha256="023ji6q1nvksmhp3ny8ad39xxccc0a1rv9iaiaagwavgzzc0pjd9"; depends=[fields poibin rjags]; }; BayesBD = derive2 { name="BayesBD"; version="1.2"; sha256="10ik2lndqgmy6pvdm6cx4fsxgjb2fgi6hlz5ic35ab7fkpi90ka5"; depends=[jpeg mritc png Rcpp RcppArmadillo shiny]; }; BayesBinMix = derive2 { name="BayesBinMix"; version="1.4.1"; sha256="1b18qg0mjbmrilwqffrq33gw04fzask2xgj1bp4cli51cjf2slf7"; depends=[coda doParallel foreach label_switching]; }; BayesCR = derive2 { name="BayesCR"; version="2.1"; sha256="1qav7l64iqqdvr1v6c7hlzvbx7zbvsa55pyisvkq5rsayy1rdsl1"; depends=[mnormt mvtnorm rootSolve truncdist]; }; + BayesCTDesign = derive2 { name="BayesCTDesign"; version="0.5.0"; sha256="0q37q2mwvg9616chr2xzgd4mrpv9rqsqq9p0lc02gi35ay7hafcp"; depends=[eha ggplot2 reshape2 survival]; }; BayesCombo = derive2 { name="BayesCombo"; version="1.0"; sha256="01rzjja0xzvqyjivl8a9da13v13ylm4dwv4f27cmgz2znakfg5y8"; depends=[]; }; BayesComm = derive2 { name="BayesComm"; version="0.1-2"; sha256="1rrbvwcfm93cw0m33g0zn6nyshfjc97kb3fby9cga0zaixc0a8rk"; depends=[abind coda mvtnorm Rcpp RcppArmadillo]; }; BayesDA = derive2 { name="BayesDA"; version="2012.04-1"; sha256="0fp27cmhw8dsxr4mc1flm6qh907476kph8ch2889g9p31xm1psjc"; depends=[]; }; @@ -324,18 +338,19 @@ in with self; { BayesFM = derive2 { name="BayesFM"; version="0.1.2"; sha256="0fiw2x29cpv3prywsbvs1m8a588s2wpi3bwzzjisi2rafbl619xd"; depends=[checkmate coda ggplot2 gridExtra plyr]; }; BayesFactor = derive2 { name="BayesFactor"; version="0.9.12-4.2"; sha256="1z083v7is21gm0a458jm5ph3xfdm7mh29a6sg2r1njq82f8x3s3g"; depends=[coda gtools hypergeo Matrix MatrixModels mvtnorm pbapply Rcpp RcppEigen stringr]; }; BayesGESM = derive2 { name="BayesGESM"; version="1.4"; sha256="0qw2byb48f67461m1k8a1rqh6a0c3zq1rc4ni9xzxv8dih4wkq0f"; depends=[Formula GIGrvg normalp]; }; - BayesGOF = derive2 { name="BayesGOF"; version="4.0"; sha256="10y36qyp674kgw08wrb6drd942314frw4ilkwna6qg6nqh07jzbk"; depends=[Bolstad2 nleqslv orthopolynom VGAM]; }; + BayesGOF = derive2 { name="BayesGOF"; version="5.2"; sha256="17wm0228xq3db431abyi9jr0q1q86nnajsn7hmy4dwzgvrlz5s0i"; depends=[Bolstad2 nleqslv orthopolynom VGAM]; }; BayesH = derive2 { name="BayesH"; version="1.0"; sha256="0mjd1i3rkhyq3qcalq0ing0ap0igbhyvczaihl4pcfidgs70bci3"; depends=[]; }; BayesLCA = derive2 { name="BayesLCA"; version="1.7"; sha256="0lsqgjqal9092v1wr07p8g5cqm24k2d80sp7hlr7r1xknakmm1b6"; depends=[coda e1071 fields MCMCpack nlme]; }; BayesMAMS = derive2 { name="BayesMAMS"; version="0.1"; sha256="1qq3j9nm0k58gpyfavz77v1dwghy8pmpk0v52cj7l8sb3a3aiinm"; depends=[mvtnorm]; }; + BayesMallows = derive2 { name="BayesMallows"; version="0.1.1"; sha256="0z9zc3m0qiyi731z323sfafp1bj3gwvl1ii9hvb4lsk2q8n858np"; depends=[cowplot dplyr ggplot2 HDInterval igraph purrr Rcpp RcppArmadillo Rdpack relations rlang sets tidyr]; }; BayesMed = derive2 { name="BayesMed"; version="1.0.1"; sha256="1ysc7sh0drqxbisi2dz6gj4jlw6qsd879bbhr5pra7nxgmk4h650"; depends=[MCMCpack polspline QRM R2jags]; }; BayesMixSurv = derive2 { name="BayesMixSurv"; version="0.9.1"; sha256="19kf39881q00pap9afwvvggk4s4w3qpz17b7065nig1mvk8dnp8r"; depends=[survival]; }; BayesNI = derive2 { name="BayesNI"; version="0.1"; sha256="0zvr6rkb5zxgl53xby69d0j3yrfnlcmac6kwkxz77q5616w9dwq0"; depends=[]; }; - BayesNetBP = derive2 { name="BayesNetBP"; version="1.3.0"; sha256="01blqc48ssgr3dg5bk7yzwpa59n3ja1dggglwm2441dwjxf10vxx"; depends=[bnlearn doBy fields graph gRbase igraph qtl qtlnet RColorBrewer Rgraphviz]; }; + BayesNetBP = derive2 { name="BayesNetBP"; version="1.4.0"; sha256="007anxk76rxwskc7fvbmaw7ihjnwqad0xmiy6iyv68lwrjifvpc2"; depends=[bnlearn doBy fields graph igraph qtl qtlnet RColorBrewer Rgraphviz]; }; BayesPieceHazSelect = derive2 { name="BayesPieceHazSelect"; version="1.1.0"; sha256="0znbmv7crqycdx75jh02h6z8d6cifjszbrldv2yva4mkjxsydag5"; depends=[mvtnorm]; }; BayesPiecewiseICAR = derive2 { name="BayesPiecewiseICAR"; version="0.2.1"; sha256="1qrmw7zmygdzz84p76hyh2d8dx88b8xhbbd7radqm39g35zq5wz6"; depends=[mvtnorm]; }; BayesRS = derive2 { name="BayesRS"; version="0.1.3"; sha256="0fhvnckabp0z1cdsbjgv3ijnzaxwhrk83fwcflgqbhvm3a9lzr77"; depends=[coda ggplot2 metRology reshape rjags]; }; - BayesS5 = derive2 { name="BayesS5"; version="1.30"; sha256="1nx61sq1d20238hbgr9p9hrmnxsxpsjhnb4sdhmqg1m7klq8qyrw"; depends=[abind Matrix snowfall]; }; + BayesS5 = derive2 { name="BayesS5"; version="1.31"; sha256="1azxn3r0s52zy6y5qsa6yx331795mkk7fb28fcinv2zx9iyvk33w"; depends=[abind Matrix snowfall]; }; BayesSAE = derive2 { name="BayesSAE"; version="1.0-2"; sha256="1xbx9hr254agpcqs1fl7qi7h19fd2bbmjszn44l566n2svgvxwf5"; depends=[coda Formula lattice]; }; BayesSingleSub = derive2 { name="BayesSingleSub"; version="0.6.2"; sha256="0hgmyhg4mpxx7k91hbfa9h3533mqyn9rz4kl9kb30cc9g7g0m045"; depends=[coda MCMCpack mvtnorm]; }; BayesSpec = derive2 { name="BayesSpec"; version="0.5.3"; sha256="17gchdijcjhbr2y4glbq9szjh4qmgivzh6p4fllh589da18nzjcr"; depends=[mvtnorm pscl trust]; }; @@ -350,7 +365,7 @@ in with self; { BayesianAnimalTracker = derive2 { name="BayesianAnimalTracker"; version="1.2"; sha256="1pgjijqznfdpvw296h5vksnxgspxs7qhy6s84ww7abnlhg59bz5s"; depends=[TrackReconstruction]; }; BayesianGLasso = derive2 { name="BayesianGLasso"; version="0.2.0"; sha256="09yb1qqx6qlsspk3ndrcqxy0956iqznw0rmyvqxgxxp3zd3y21xp"; depends=[MASS statmod]; }; BayesianNetwork = derive2 { name="BayesianNetwork"; version="0.1.3"; sha256="1lli3v922cvp1kwg4sllgvm4rnb972anlpl0lklqk3aqi7ff6flw"; depends=[bnlearn heatmaply lattice networkD3 plotly rintrojs shiny shinyAce shinydashboard]; }; - BayesianTools = derive2 { name="BayesianTools"; version="0.1.4"; sha256="13imh2vc3picfy1ppzfisgkhk2n8w8s0fnhklkni06wz1816h2zd"; depends=[bridgesampling coda DHARMa ellipse emulator IDPmisc MASS Matrix msm mvtnorm numDeriv Rcpp tmvtnorm]; }; + BayesianTools = derive2 { name="BayesianTools"; version="0.1.5"; sha256="02mwjy19y4mvqwqyc9b56l27gq40nrjq22dj7s12bip8bzqlh9gk"; depends=[bridgesampling coda DHARMa ellipse emulator IDPmisc MASS Matrix msm mvtnorm numDeriv Rcpp tmvtnorm]; }; Bayesianbetareg = derive2 { name="Bayesianbetareg"; version="1.2"; sha256="0imsz2761ngbnap0vnxks9527la51m5g8gkkn1vrgwis43i6qcgs"; depends=[betareg mvtnorm]; }; BaylorEdPsych = derive2 { name="BaylorEdPsych"; version="0.5"; sha256="1kq6nvzdqwawygp7k62lw5hyccsj81jg82hq60yidgxnmmnnf7y2"; depends=[]; }; BcDiag = derive2 { name="BcDiag"; version="1.0.10"; sha256="1gyinmx5wn2kk70hiy28ghilkhfirfjbfqdrqq5h3wfb4khnq6pz"; depends=[fabia]; }; @@ -359,7 +374,7 @@ in with self; { BeSS = derive2 { name="BeSS"; version="1.0.5"; sha256="1gq0zfrzkh2cndly7amhjy0qnfb60lsj7izmdlf2m8h7yrcicjzv"; depends=[glmnet Matrix Rcpp RcppEigen survival]; }; Benchmarking = derive2 { name="Benchmarking"; version="0.27"; sha256="0y31l3ddxm16sylw7p6dnv39w9ydjkjn92gi0za7s0vx07mzimxp"; depends=[lpSolveAPI ucminf]; }; BenfordTests = derive2 { name="BenfordTests"; version="1.2.0"; sha256="1nnj0w0zwcmg7maqmmpixx7alvsyxva370ssc26ahg6kxy5a621w"; depends=[]; }; - Bergm = derive2 { name="Bergm"; version="4.1.0"; sha256="13qdcwycppwy9qqc42zi5fz6wg4a47pfczb3nnfj1bdn2drxqw2x"; depends=[coda ergm Matrix MCMCpack mvtnorm network]; }; + Bergm = derive2 { name="Bergm"; version="4.2.0"; sha256="04w9brzjl51nvrvyp2zn00xfcbyp1q55h4x6m7d60610fbn7f60m"; depends=[coda ergm Matrix MCMCpack mvtnorm network]; }; Bessel = derive2 { name="Bessel"; version="0.5-5"; sha256="1apcpwqgnbsn544x2mfjkp4136xn33pijazmbzas7lr14syl5a6b"; depends=[Rmpfr]; }; BetaBit = derive2 { name="BetaBit"; version="1.3"; sha256="1x9mfnijgi8726p82d52g2zgmliwsc97v2g96mz9ccz2vqqnwq4w"; depends=[digest]; }; BeviMed = derive2 { name="BeviMed"; version="5.3"; sha256="01q5pr776ki973bcld20cqpsz9f10bb30vj95da9gbz5af6bvb14"; depends=[Rcpp]; }; @@ -375,12 +390,12 @@ in with self; { BigQuic = derive2 { name="BigQuic"; version="1.1-8"; sha256="1kg48jqm62qmz5x0h6fgvd5fs5dvg51x4spsn1q503ag4dqqdjc0"; depends=[Matrix Rcpp scalreg]; }; BigSEM = derive2 { name="BigSEM"; version="0.2"; sha256="091fdibcxd8a8kf9k4pvc1sah830wh179f28gag9g816h4qclnx9"; depends=[MASS parcor]; }; BigTSP = derive2 { name="BigTSP"; version="1.0"; sha256="1jdpa8rcnrhzn0hilb422pdxprdljrzpgr4f26668c1vv0kd6k4v"; depends=[gbm glmnet randomForest tree]; }; - BigVAR = derive2 { name="BigVAR"; version="1.0.2"; sha256="14vb6nc6bn22dd112sg9zypkchmkv17gnwxs915k0k5vbb9czlr5"; depends=[lattice MASS Rcpp RcppArmadillo RcppEigen zoo]; }; - BimodalIndex = derive2 { name="BimodalIndex"; version="1.1.5"; sha256="08hkdpvwvi5vczc9hdzbk5qnr6s44wyf6n0xv0zbd51dqcmv2xbk"; depends=[mclust oompaBase]; }; + BigVAR = derive2 { name="BigVAR"; version="1.0.3"; sha256="0065amdg71i9lmv7illlxgxaiyb7lvpkc68ah5vgflb6l0djisb9"; depends=[lattice MASS Rcpp RcppArmadillo RcppEigen zoo]; }; + BimodalIndex = derive2 { name="BimodalIndex"; version="1.1.7"; sha256="1mxyrybxxkcm6nah227cx5mhddzq6k2pf1mmm5wl7jv1br43xdm8"; depends=[mclust oompaBase]; }; BinNonNor = derive2 { name="BinNonNor"; version="1.4"; sha256="00405ww9mh910jqww60w7cb8qbjql2jn13m60ly0bnxilg44r0bb"; depends=[BB corpcor Matrix mvtnorm]; }; BinNor = derive2 { name="BinNor"; version="2.2"; sha256="03cggpk9fhndnk9vv5i6fzsq4wjxc5405xxlxg3l9gb618kj437f"; depends=[corpcor Matrix mvtnorm psych]; }; BinOrdNonNor = derive2 { name="BinOrdNonNor"; version="1.4"; sha256="0qiy0wf9i9r44ycz1jl666nwpsv5yz7vzz1szdy22sk68lz984bv"; depends=[BB corpcor GenOrd Matrix mvtnorm OrdNor]; }; - BinQuasi = derive2 { name="BinQuasi"; version="0.1-5"; sha256="1xjkxf625ggfi5nzj8kvb99xmyvva9qbvl0a3szk0aksqhqlikqi"; depends=[BiocGenerics csaw edgeR GenomicAlignments GenomicRanges IRanges mgcv pracma quadprog RMySQL Rsamtools S4Vectors SummarizedExperiment]; }; + BinQuasi = derive2 { name="BinQuasi"; version="0.1-6"; sha256="0jf7zf3yqr2kgcm6h35234x2dqf65d2dzsh63b4q8m5l36r77k59"; depends=[BiocGenerics csaw edgeR GenomicAlignments GenomicRanges IRanges mgcv pracma quadprog RMySQL Rsamtools S4Vectors SummarizedExperiment]; }; Binarize = derive2 { name="Binarize"; version="1.2"; sha256="014iagr76y3v7ljn6zlbg1hxwbwdi889bqxa7hwmqrcybnla22ja"; depends=[diptest]; }; BinaryEMVS = derive2 { name="BinaryEMVS"; version="0.1"; sha256="1ainp6pg481yqhjc4f1pkxzxczbi3qm0kgq280vndq859ldfkpnh"; depends=[]; }; BinaryEPPM = derive2 { name="BinaryEPPM"; version="2.2"; sha256="0la8mi2wadcxwrq882n4zxvihyqkp8m383c28gl9gm4fs8cqwlxi"; depends=[expm Formula lmtest numDeriv]; }; @@ -388,34 +403,35 @@ in with self; { BioCircos = derive2 { name="BioCircos"; version="0.3.3"; sha256="0l8kd1imb8022n631psm9na0vp502ndn2q7m3mshx9c0mnqsv8n3"; depends=[htmlwidgets jsonlite plyr RColorBrewer]; }; BioFTF = derive2 { name="BioFTF"; version="1.2-0"; sha256="03r6fhpc4dqrcnbl73j9kav1l7rblgfldpbkl2p367vv20xggqih"; depends=[]; }; BioGeoBEARS = derive2 { name="BioGeoBEARS"; version="0.2.1"; sha256="0wyddc5ma47ljpqipfkwsgddp12m9iy4kqwwgklyhf0rqia56b1h"; depends=[ape cladoRcpp FD gdata optimx phylobase plotrix rexpokit xtable]; }; - BioInstaller = derive2 { name="BioInstaller"; version="0.3.3"; sha256="0mr3qyabr4pwz4cjnig5nzbq0hqqd9rmrpnhmgb1gp3c6l013yk1"; depends=[configr devtools futile_logger git2r R_utils RCurl rvest stringi stringr]; }; + BioInstaller = derive2 { name="BioInstaller"; version="0.3.6"; sha256="03fl00f7zwq4v9i09qwnbpnnnky1nf3v91sx52xqiz710gw4awx6"; depends=[configr devtools futile_logger git2r jsonlite liteq R_utils RCurl rvest shiny stringi stringr]; }; BioMark = derive2 { name="BioMark"; version="0.4.5"; sha256="1ifc72bayy3azbilajqqzl0is6z7l1zaadchcg3n8lhmjrv5sk3m"; depends=[glmnet MASS pls st]; }; - BioPET = derive2 { name="BioPET"; version="0.2.1"; sha256="0pwkgffm8hlgvpk3dfzskl50kp9b4rnxc8aj119kwrmlfazhhl50"; depends=[ggplot2 gridExtra pROC VGAM]; }; + BioPET = derive2 { name="BioPET"; version="0.2.2"; sha256="0zgq7i37d0rnjhlkcrl44x62vhz0njsv2fldm64j9r4wc02z1q9n"; depends=[ggplot2 gridExtra pROC VGAM]; }; BioStatR = derive2 { name="BioStatR"; version="2.0.0"; sha256="1k3z337lj8r06xgrqgi5h67hhkz2s5hggj6dhcciq26i1nzafsw6"; depends=[ggplot2]; }; - BiocManager = derive2 { name="BiocManager"; version="1.30.1"; sha256="1d7dqmkg6h02x6agc20prj8nkz061pm7f1gqizibsfz13wv5cx6w"; depends=[]; }; + BiocManager = derive2 { name="BiocManager"; version="1.30.3"; sha256="0mfvx1xzsgiag9p42kdyqg8fvajyakrdy3z2smhdlaawzbi0qmax"; depends=[]; }; Biocomb = derive2 { name="Biocomb"; version="0.4"; sha256="0jqfac81r5731m0i9jq7v5ns9263p8r7i03jyz10y915kfr6ikh6"; depends=[arules class e1071 FSelector gtools MASS nnet pamr pROC randomForest Rcpp rgl ROCR rpart RWeka]; }; Biodem = derive2 { name="Biodem"; version="0.4"; sha256="0k0p4s21089wg3r3pvyy9cxsdf4ijdl598gmxynbzvwpr670qnsh"; depends=[]; }; - BiodiversityR = derive2 { name="BiodiversityR"; version="2.9-2"; sha256="15wa7la36mfr9fi8cahvrkcd5n5gjiar66mj1c1gsaazjwqsfw6n"; depends=[Rcmdr vegan]; }; + BiodiversityR = derive2 { name="BiodiversityR"; version="2.10-1"; sha256="009xrfpnnplr2i7z8kcxp9q924mf7x8j9pqggczynrx5lb3dlrlj"; depends=[Rcmdr vegan]; }; Biograph = derive2 { name="Biograph"; version="2.0.6"; sha256="0vklqwbifbac3v9ws9fs22yxpqqk5b3m96qzr8j0irnimb5kgh5p"; depends=[Epi etm ggplot2 lubridate msm mstate mvna plyr reshape survival]; }; Bioi = derive2 { name="Bioi"; version="0.2.9"; sha256="0kvqvvaws1zc3npxvl3jqidak24n5y8n98ml44mkbh7c5n296z2p"; depends=[assertthat dplyr igraph Rcpp]; }; Biolinv = derive2 { name="Biolinv"; version="0.1-2"; sha256="0g9vw1jcsjawmddkixssm5gbncy17fdd6a3c5b2qd4hx81kxz8q9"; depends=[classInt fields raster sp spatstat]; }; Bios2cor = derive2 { name="Bios2cor"; version="1.2"; sha256="00fzvj20x85gcpb9l6rfnm3qml8nnl365z1a68j90qi14wy6dfh6"; depends=[bigmemory bio3d circular igraph]; }; BisRNA = derive2 { name="BisRNA"; version="0.2.2"; sha256="11jl5109nlm272vncprwplkz4kpvg7yx6yfnbjg47lfrsxcj8n0g"; depends=[MASS]; }; + BivGeo = derive2 { name="BivGeo"; version="1.0.1"; sha256="1vdyjlcgkzpwgzzimpqspnca58xx6spfg7xy49bhmdr0d24iy76z"; depends=[]; }; BivRegBLS = derive2 { name="BivRegBLS"; version="1.0.0"; sha256="1fi399vv54dnfywxbc8yb1r58lrl7zpqkahvcx3f5svjy20dvvbw"; depends=[ellipse]; }; BivUnifBin = derive2 { name="BivUnifBin"; version="1.2"; sha256="0m4a2m7lvlm02hqqigwg3cd6sjzxnxqw1mchxj5g19whk34vwkwi"; depends=[BinOrdNonNor rootSolve]; }; BivarP = derive2 { name="BivarP"; version="1.0"; sha256="08f7sphylaj3kximy1avaf29hxj2n800adsnssh01p9bcxnzb2i4"; depends=[copula dfoptim survival]; }; Bivariate_Pareto = derive2 { name="Bivariate.Pareto"; version="1.0.2"; sha256="1clfknv56zfi9wgzi5bricchvis83mc33i5d4qk3yzf2ryzxag7q"; depends=[compound_Cox]; }; BlakerCI = derive2 { name="BlakerCI"; version="1.0-5"; sha256="16zj678qzwqih92q19dma7a602d0hif2dhii5hvxdgjymg7hg2bj"; depends=[]; }; BlandAltmanLeh = derive2 { name="BlandAltmanLeh"; version="0.3.1"; sha256="11p30zqb3f9ifk3v18dspg18sclz5zxjygy7hw8ccb4bcqhx68lm"; depends=[]; }; - Blaunet = derive2 { name="Blaunet"; version="2.0.7"; sha256="19p2rqbg44pi0dz2iimjgr69zyrjf0dfsic6spph81dyrri1zyvh"; depends=[cairoDevice ergm foreign gWidgets gWidgetsRGtk2 haven network plot3D plot3Drgl rgl RGtk2 sna statnet_common]; }; + Blaunet = derive2 { name="Blaunet"; version="2.0.8"; sha256="127nl041a1rbf8c4ffv8sbkn5y03ywaxkp51yd0sahs2anf415y4"; depends=[cairoDevice ergm foreign gWidgets gWidgetsRGtk2 haven network plot3D plot3Drgl rgl RGtk2 sna statnet_common]; }; Blendstat = derive2 { name="Blendstat"; version="1.0.2"; sha256="04rn5yqkmqrcali75ly476x0dasysbxilynziy48mrm6q3h7xyjy"; depends=[lattice MASS]; }; BlockCov = derive2 { name="BlockCov"; version="0.1.0"; sha256="102slm6qfhsra5fg2qzwi3ldi4xny596g2cq4csiprpkhl9qwyli"; depends=[Matrix]; }; BlockFeST = derive2 { name="BlockFeST"; version="1.6"; sha256="0hj7a5as7nxbgjac7lbj6qfwffx3g8x8phpf9a55f1c9cdzi73a5"; depends=[BASIX]; }; BlockMessage = derive2 { name="BlockMessage"; version="1.0"; sha256="1jrcb9j1ikbpw098gqbcj29yhffa15xav90y6vpginmhbfpwlbf4"; depends=[]; }; Bmix = derive2 { name="Bmix"; version="0.6"; sha256="17swhn2p7jv29fkspacg2v181lkc9yd3xww2fx31xs8hsndcm857"; depends=[mvtnorm]; }; - BoSSA = derive2 { name="BoSSA"; version="3.4"; sha256="0sv42gyv5pzn9w6bn1y361mg6x8z9h1mbgyp8yp5wbv3jl6469s6"; depends=[ape jsonlite phangorn plotrix RSQLite]; }; + BoSSA = derive2 { name="BoSSA"; version="3.5"; sha256="1z7wspp8bk2zyxjbgfyysqbddwmygxsx51320spk50pn5svg5ckh"; depends=[ape jsonlite phangorn plotrix RSQLite]; }; BoardGames = derive2 { name="BoardGames"; version="1.0.0"; sha256="1w3ghs29qlnjrd46lvv055snclwwy6a22fgdqszqm377w4favnhm"; depends=[]; }; - Bolstad = derive2 { name="Bolstad"; version="0.2-38"; sha256="1535cfpn202vb037q027dy51kc4yg5g9mpn4l6x2q1pwrvnnx18f"; depends=[mvtnorm]; }; + Bolstad = derive2 { name="Bolstad"; version="0.2-40"; sha256="1xz2x8gm27aqw1b3psjbpmzkxla8rvkvb974c3imgj71d1x0ykgm"; depends=[mvtnorm]; }; Bolstad2 = derive2 { name="Bolstad2"; version="1.0-28"; sha256="08cfadvl9jl9278ilsf8cm2i2a3i8zsa2f3vjzw2nlv85fwi2c7v"; depends=[]; }; BoltzMM = derive2 { name="BoltzMM"; version="0.1.1"; sha256="0jb81wn8b5lhvlkpv4rs66qdmryf57n2xmxgwl1qk0n8bfzy8ayi"; depends=[BH Rcpp RcppArmadillo]; }; BonEV = derive2 { name="BonEV"; version="1.0"; sha256="0lmgrg53b0abb5hidyjjmwn7lf2ani84k9fil7g6j6mdajjhh1b7"; depends=[qvalue]; }; @@ -425,17 +441,18 @@ in with self; { BoomSpikeSlab = derive2 { name="BoomSpikeSlab"; version="1.0.0"; sha256="07cgzwcnr3z5qnm1fsc75xh9c61gljgd8s633g336dqls4b7nfan"; depends=[BH Boom]; }; BootMRMR = derive2 { name="BootMRMR"; version="0.1"; sha256="07am80603pv1dh5ma3zb0idnslkzm5m3ym8sd1nhkh8zbc6qqmzs"; depends=[]; }; BootPR = derive2 { name="BootPR"; version="0.60"; sha256="03zw7hz4gyhp6iq3sb03pc5k2fhvrpkspzi22zks25s1l7mq51bi"; depends=[]; }; - BootValidation = derive2 { name="BootValidation"; version="0.1.5"; sha256="0whb13gg2zsx8gzwd1f895jai0z2xpfjifdr91kdxmzpsmw78jxj"; depends=[glmnet pbapply pROC risksetROC survival]; }; + BootValidation = derive2 { name="BootValidation"; version="0.1.65"; sha256="1q42yqj56by3j1kmq17pjl4aq0sznhph65yxfwav39q28bf5y83r"; depends=[glmnet pbapply pROC risksetROC survival]; }; BootWPTOS = derive2 { name="BootWPTOS"; version="1.2"; sha256="1860l11xg7444l3x42rq3636csla23gg0mi5in1zibjwn1ddc202"; depends=[fractal wavethresh]; }; - Boruta = derive2 { name="Boruta"; version="5.3.0"; sha256="181ldma4rfd14bnq5prhhsjji1hpr4jmn69b017cs08w7k0nqdi9"; depends=[ranger]; }; + BootstrapQTL = derive2 { name="BootstrapQTL"; version="1.0.2"; sha256="1qf93wmrh6znm81jr3gyn1sl8x4i6pdx811r70fg8k026fbfjn3a"; depends=[data_table foreach MatrixEQTL]; }; + Boruta = derive2 { name="Boruta"; version="6.0.0"; sha256="1pp8zal1vhxlzdhl20phn39m3ffhw5glyqbcgwa0w14zw2mpm6hw"; depends=[ranger]; }; BosonSampling = derive2 { name="BosonSampling"; version="0.1.1"; sha256="0wxn12h903a0mlrkrr3w4qd9ld2a4bifs95i98cnl2dsb76rwf12"; depends=[Rcpp RcppArmadillo]; }; BoutrosLab_plotting_general = derive2 { name="BoutrosLab.plotting.general"; version="5.9.2"; sha256="0cyhqglz0mhfi8yk3a1qdry5ljd8rjzayqj1hyw44w9b8xsm6659"; depends=[cluster e1071 gridExtra gtable hexbin lattice latticeExtra MASS]; }; BradleyTerry2 = derive2 { name="BradleyTerry2"; version="1.0-8"; sha256="09c6zdzf5k5x7zv5m6ygl4k5xbprlpb6s3lrq432mmv8rn2yi58z"; depends=[brglm gtools lme4 qvcalc]; }; BradleyTerryScalable = derive2 { name="BradleyTerryScalable"; version="0.1.0"; sha256="0g12fkfs2sykyd6fzf924zv8gj2js452c4pf0pz2p6156chwrk8c"; depends=[dplyr igraph Matrix purrr Rcpp RcppArmadillo]; }; - BrailleR = derive2 { name="BrailleR"; version="0.28.0"; sha256="0hg3858aa9zr68rd7xdc1kjapdfp5lgy8rx07qd3brljnhjaxxsz"; depends=[devtools extrafont ggplot2 gridGraphics gridSVG hunspell knitr magrittr moments nortest reticulate rmarkdown whisker XML xtable]; }; + BrailleR = derive2 { name="BrailleR"; version="0.29.1"; sha256="0n6njampfav84yd68vi4nw8h3dm285m3wfqi048ghiw740sa4rjk"; depends=[devtools dplyr extrafont ggplot2 gridGraphics gridSVG hunspell knitr magrittr moments nortest reticulate rmarkdown roloc rolocISCCNBS whisker XML xtable]; }; Branching = derive2 { name="Branching"; version="0.9.4"; sha256="1c209gdasm7qipv2gg4d1hr0jmhnzz5rddgjxb7xacazc0c2mhff"; depends=[]; }; - BreedingSchemeLanguage = derive2 { name="BreedingSchemeLanguage"; version="0.9.5"; sha256="0hw9a3d2wqngvw17bgiwl7l9pn0f7pn8v3da6zz4gpf986pk8blq"; depends=[ggplot2 lme4 Matrix Rcpp rrBLUP snowfall]; }; - Brobdingnag = derive2 { name="Brobdingnag"; version="1.2-5"; sha256="1ly9fx6mmiwrni52li0c23amsh4k36zjv9h5432igf0fgldhr3pq"; depends=[]; }; + BreedingSchemeLanguage = derive2 { name="BreedingSchemeLanguage"; version="0.9.6"; sha256="0lj8s42ndqqllnm8v978481zqmc751v31909rir1pkwcsm3irisx"; depends=[ggplot2 lme4 Matrix Rcpp rrBLUP snowfall]; }; + Brobdingnag = derive2 { name="Brobdingnag"; version="1.2-6"; sha256="1m3ajvcksqfck5l5hj5xiflj4ry6d896ybv4f0xxks8chgnwmv0r"; depends=[]; }; BrownDog = derive2 { name="BrownDog"; version="0.2.1"; sha256="0wnf1jcf4cakbvj9j1l7jk9mq7gd4j1il1ha2vglghqn04f27938"; depends=[httpuv jsonlite RCurl]; }; Brq = derive2 { name="Brq"; version="2.1"; sha256="0my9sb0761nq1ivx31k7nwpg8xidqvd0zv3lan57hnsmn7d1i7a9"; depends=[]; }; Brundle = derive2 { name="Brundle"; version="1.0.8"; sha256="1yj196x6xb75qgi16pgg3dyjmxmjklfjcpxymaki32drhmylf24z"; depends=[DESeq2 DiffBind lattice Rsamtools]; }; @@ -444,32 +461,34 @@ in with self; { BurStFin = derive2 { name="BurStFin"; version="1.02"; sha256="16w2s0bg73swdps9r0i8lwvf1najiqyx7w7f91xrsfhmnqkkjzka"; depends=[]; }; BurStMisc = derive2 { name="BurStMisc"; version="1.1"; sha256="0cyi42zkn2dby162x9f95b3hpqxbzx25s7nahb4p86r60xj3a5c0"; depends=[]; }; BusinessDuration = derive2 { name="BusinessDuration"; version="0.2.0"; sha256="17923n1r3n8kp7qqzr2dv8ffax355yyc3b9f6mv2hxy6k31hrrb8"; depends=[chron]; }; - BuyseTest = derive2 { name="BuyseTest"; version="1.3.2"; sha256="1wdc2w8pdjnsj2hn902zrn6d734d9y4l4cfxd4hq1m1n7ly6gnnk"; depends=[data_table doParallel foreach lava prodlim Rcpp RcppArmadillo]; }; + BuyseTest = derive2 { name="BuyseTest"; version="1.6"; sha256="1p5v86xbcl88jmdpxzmwj5wmx6a6h8akzddb2lx03wcn759icx7v"; depends=[data_table doParallel foreach lava prodlim Rcpp RcppArmadillo]; }; C443 = derive2 { name="C443"; version="1.0.0"; sha256="0d04769m9kkjqpj1cgfhqrri893nwi6qn7fz63z5pkym5cig5yyi"; depends=[cluster ggplot2 gridExtra igraph MASS partykit qgraph RColorBrewer reshape2 rpart]; }; C50 = derive2 { name="C50"; version="0.1.2"; sha256="1fpspmsm62h077dkdhii23bs3sxlblabfqj4waz794ihw1b9hicg"; depends=[Cubist partykit]; }; + CA3variants = derive2 { name="CA3variants"; version="1.0"; sha256="006r3a8jhkbgdfpycbdv3q1pfx9pkf102cgi285awgdhs6fhh88s"; depends=[ggplot2 ggrepel gridExtra]; }; CADFtest = derive2 { name="CADFtest"; version="0.3-3"; sha256="06bwv728ckalzibxginzfica24w18m4g87i0i064m3q89ghmnlqm"; depends=[dynlm sandwich tseries urca]; }; CADStat = derive2 { name="CADStat"; version="3.0.8"; sha256="0wdglw1vyd5gz70r9ma0mwshvizv39nb4ahp8pvr70c4qqzsfhc0"; depends=[bio_infer car gdata gmodels JavaGD JGR lattice MASS quantreg rJava rpart XML]; }; - CAISEr = derive2 { name="CAISEr"; version="0.3.0"; sha256="00jj01hyk86f90b8krl3k8pfh98blhq6vmvnizwwhrmkzy7d7bbj"; depends=[assertthat pbmcapply]; }; + CAISEr = derive2 { name="CAISEr"; version="0.3.3"; sha256="1jbmc2ajmvqs7i1qxx1drx6nqqwl29hxk02qmyf8iamg7ip4adqi"; depends=[assertthat pbmcapply]; }; CALF = derive2 { name="CALF"; version="0.2.0"; sha256="12w1vr0rk6m4lv6zvqrf45k81d301ln1253wyy9xi6mv1hkabg0v"; depends=[ggplot2]; }; CALIBERrfimpute = derive2 { name="CALIBERrfimpute"; version="1.0-1"; sha256="1xsnqyj0qdi081rdnpas9ciy9zbhdcjx3lphl6drk0bbmik3znkv"; depends=[mice mvtnorm randomForest]; }; CAM = derive2 { name="CAM"; version="1.0"; sha256="07mmrz6j8cm6zgaw2zcxgkxb7abd651kb80526r271snjgvpr5bl"; depends=[glmnet Matrix mboost mgcv]; }; CAMAN = derive2 { name="CAMAN"; version="0.74"; sha256="0d932fbqzlxlhn7m8zfx7wr02pc7fm8398rym1jh2cdy2fk5im08"; depends=[mvtnorm sp]; }; - CANSIM2R = derive2 { name="CANSIM2R"; version="1.12.0"; sha256="12wnbgrcx9373n5n5wm6scsw8aq1jfrjzfh2f38asn7sxm3ky6ri"; depends=[downloader Hmisc reshape2]; }; - CARBayes = derive2 { name="CARBayes"; version="5.0"; sha256="0kii28mf75m7ij1l0bz2w93h7m1wwq1xjvv3d3nf3ps9h8rxzi8d"; depends=[CARBayesdata coda MASS matrixcalc MCMCpack Rcpp sp spam spdep truncnorm]; }; - CARBayesST = derive2 { name="CARBayesST"; version="2.5.2"; sha256="0jww40ghcfiq7laprdicynn1m34ykz9l9navi9rdx8p8d7k76ykc"; depends=[CARBayesdata coda dplyr MASS matrixcalc Rcpp sp spam spdep testthat truncdist truncnorm]; }; - CARBayesdata = derive2 { name="CARBayesdata"; version="2.0"; sha256="0mlqlqm50k4lqyvbjva7vji9jqa3rwi5ky5521rp5l4nqlj53sfb"; depends=[shapefiles sp]; }; + CANSIM2R = derive2 { name="CANSIM2R"; version="1.14.1"; sha256="1dnzbd9lyqj3w80lx12qxcsbmv8wy6hxknyi5ijp99cfv7kaq1kc"; depends=[downloader Hmisc reshape2]; }; + CARBayes = derive2 { name="CARBayes"; version="5.1"; sha256="1jq5skrpsmj9glypy1l04wjc9bvs91wjcwmrilhrhh8mkvysravh"; depends=[CARBayesdata coda leaflet MASS matrixcalc MCMCpack Rcpp rgdal sp spam spdep truncnorm]; }; + CARBayesST = derive2 { name="CARBayesST"; version="3.0"; sha256="1izz6lq56wlhwv7sbznckwrs7xpj2iz59g373ycbyjgwksx2k913"; depends=[CARBayesdata coda dplyr gtools leaflet MASS matrixcalc matrixStats Rcpp rgdal sp spam spdep testthat truncdist truncnorm]; }; + CARBayesdata = derive2 { name="CARBayesdata"; version="2.1"; sha256="09rjxdrbpnqm6gv9g1jxh91jmww345wi9vlhb4s1n6b3xnh44fhs"; depends=[shapefiles sp]; }; CARE1 = derive2 { name="CARE1"; version="1.1.0"; sha256="1zwl4zv60mrzlzfgd7n37jjlr0j918a8ji36n94s5xw8wwipiznw"; depends=[]; }; CARLIT = derive2 { name="CARLIT"; version="1.0"; sha256="04kpjfps4ydf8fj75isqp16g1asdsyf8nszhbfkpw1zxkrmiksyp"; depends=[]; }; CARRoT = derive2 { name="CARRoT"; version="1.0.0"; sha256="1xcvyk9id3scr629n7f3b1hxzfk5947n22s1hwdwi4njf3p7s67f"; depends=[doParallel foreach nnet Rdpack]; }; CARS = derive2 { name="CARS"; version="0.2"; sha256="1n8p4n9fbl20jps9g9pbspw54hq9y6kqbggc8h0i9pbm1b25ngrg"; depends=[np]; }; CARrampsOcl = derive2 { name="CARrampsOcl"; version="0.1.4"; sha256="1sdrir7h7xl1imipm9b71vca062dxqsqd8mg3w9f3s80x2aghxl8"; depends=[fields OpenCL]; }; - CASMAP = derive2 { name="CASMAP"; version="0.5.9"; sha256="1rhvc44ngcvwlp12iawry5i4fmdkb1waldb0x3diw3jssim3n6mq"; depends=[Rcpp]; }; - CAST = derive2 { name="CAST"; version="0.2.0"; sha256="01n4sdk6gsjz2g157h4y04rwkjxwzzsia3pqs0slnmvmf4yzr0b4"; depends=[caret ggplot2]; }; + CASMAP = derive2 { name="CASMAP"; version="0.6.0"; sha256="1z321l34da5ggwmbggs9d8m96syra1jm29gj68lfhd7ikbpmw96w"; depends=[Rcpp]; }; + CAST = derive2 { name="CAST"; version="0.3.0"; sha256="082xc2ic0kpp0rqyc3kh6mds2yv2n39szlmn1hf76bfnnkz1na8v"; depends=[caret ggplot2]; }; CATT = derive2 { name="CATT"; version="2.0"; sha256="12xdspl1gbf51snyrl44nn7alfyccdfihibkgvzr66lrby8b8fhg"; depends=[]; }; CATTexact = derive2 { name="CATTexact"; version="0.1.0"; sha256="0mklkmay9ph4d0z2l1gcg0lj429xkyhmz7srdil5rgwqxx9dnqs8"; depends=[]; }; - CATkit = derive2 { name="CATkit"; version="3.3.2"; sha256="1yyz3dc9r2dn16q745374dpwgf56880kv0yg35h6dhmrya3xrprm"; depends=[assertr CombMSC Hmisc magic MASS png rtf season signal]; }; - CAvariants = derive2 { name="CAvariants"; version="3.4"; sha256="1mrqvcgnxbzah7vhqqqdygds8plwswd2l8w0aq5132byhhc4kiax"; depends=[]; }; - CBCgrps = derive2 { name="CBCgrps"; version="2.1"; sha256="0cvgcpvdvpvjkzkwapx0y4a666xq54dwm00w4w9n8fhgp05mnkn8"; depends=[nortest]; }; + CATkit = derive2 { name="CATkit"; version="3.3.3"; sha256="01q2ssyg0jcjgahaslfgpakjsv2wil654lc6xrg5xbbrkx7ccb90"; depends=[assertr CombMSC Hmisc magic MASS png rtf season signal]; }; + CAinterprTools = derive2 { name="CAinterprTools"; version="1.0.0"; sha256="1ia4qfvj0nzxi6pwqnha2vpfcx3qwaw4vrjqiza11sai274j0pjy"; depends=[ca classInt cluster FactoMineR ggplot2 ggrepel Hmisc RcmdrMisc reshape2]; }; + CAvariants = derive2 { name="CAvariants"; version="3.5"; sha256="14amvfm4l219zaqi3492433j3gbhrs6dbg7smgkyp7aklnidfw5g"; depends=[ggplot2 ggrepel gridExtra rgl]; }; + CBCgrps = derive2 { name="CBCgrps"; version="2.3"; sha256="07cy8z1fyr328jpa98sdxwd1vydx8sr93jx79hjn9hgm157240mg"; depends=[nortest]; }; CBDA = derive2 { name="CBDA"; version="1.0.0"; sha256="0qm77vvqjgi83i8izly995ziv9ski8kgzqyq4g81i2k7a5dp8vxv"; depends=[doParallel foreach prettydoc SuperLearner]; }; CBPS = derive2 { name="CBPS"; version="0.19"; sha256="0rb04x8lin5p6h0ziiv2zh98qvah5mkpd3qbgrmhczacavvpb8hl"; depends=[glmnet MASS MatchIt nnet numDeriv]; }; CBT = derive2 { name="CBT"; version="1.0"; sha256="13h6sf7w03nfq2arqymwww13ywnv9xnqbqazlzn856mj3ggaqda7"; depends=[]; }; @@ -480,15 +499,15 @@ in with self; { CCP = derive2 { name="CCP"; version="1.1"; sha256="07jxh33pb8llk1gx4rc80ppi35z8y1gwsf19zrca9w91aahcs8cx"; depends=[]; }; CCTpack = derive2 { name="CCTpack"; version="1.5.2"; sha256="1kkxsk9x4jz2bvldmba7fsri3zc1cjz15z0xicjmfc7lj72ngdig"; depends=[MASS mvtnorm polycor psych R2jags rjags]; }; CCpop = derive2 { name="CCpop"; version="1.0"; sha256="10kgw3b98r0kn74w89znq6skgk8b3ldil6yb0hn5rlcf6lazjzca"; depends=[nloptr]; }; - CDECRetrieve = derive2 { name="CDECRetrieve"; version="0.1.1"; sha256="0rxwsyr2j35f52vzpg5v4jn5qi72xn1gbqxnpsfn8c6hhmqdfjwz"; depends=[dplyr glue httr lazyeval lubridate magrittr purrr readr roxygen2 rvest stringr tibble tidyr xml2]; }; + CDECRetrieve = derive2 { name="CDECRetrieve"; version="0.1.2"; sha256="1p8d9rwkcd2bxma9h3ccg2k4795v3ycihwh9hblymfis8ncfhr19"; depends=[dplyr glue httr lazyeval lubridate magrittr purrr readr roxygen2 rvest stringr tibble tidyr xml2]; }; CDFt = derive2 { name="CDFt"; version="1.0.1"; sha256="0sc8ga48l3vvqfjq3ak5j1y27hgr5dw61wp0w5jpwzjz22jzqbap"; depends=[]; }; CDLasso = derive2 { name="CDLasso"; version="1.1"; sha256="0n699y18ia2yqpk78mszgggy7jz5dybwsi2y56kdyblddcmz1yv7"; depends=[]; }; - CDM = derive2 { name="CDM"; version="6.3-45"; sha256="159ahd17ddv0y78xrfrm1zdq5wfwav4jc26b41wd23zli1ljnlj5"; depends=[MASS mvtnorm polycor Rcpp RcppArmadillo sfsmisc]; }; + CDM = derive2 { name="CDM"; version="6.6-5"; sha256="1gdmhpisy93672qyrbr0m2j3g5jivr3jik9405633pzq24ac8wvi"; depends=[MASS mvtnorm polycor Rcpp RcppArmadillo sfsmisc]; }; CDNmoney = derive2 { name="CDNmoney"; version="2012.4-2"; sha256="1isbvfq0lygs75y1hn3klqms8q7g1xbkcr8fgj75h1c99d4khvm6"; depends=[]; }; CDROM = derive2 { name="CDROM"; version="1.1"; sha256="0mvhqs4m8jp39x1rk31a1sqqmfq1avcnasgh8bizlyxx62igmi1b"; depends=[]; }; CDVine = derive2 { name="CDVine"; version="1.4"; sha256="0cp78pb6yny4n5q2j9k6xdql588536572gbphnw8zkdmrg65qyz7"; depends=[igraph MASS mvtnorm]; }; CDVineCopulaConditional = derive2 { name="CDVineCopulaConditional"; version="0.1.1"; sha256="1wyy324vrwipdsq0p021bj1gdhyxg09g3dkw8wv5v6rfrrs84m9k"; depends=[combinat VineCopula]; }; - CEC = derive2 { name="CEC"; version="0.9.4"; sha256="194n190szwzxjxfdhiah1f50vp6n7f3q567yky7pq1x2hngna5rs"; depends=[]; }; + CEC = derive2 { name="CEC"; version="0.10.2"; sha256="03fxhqlpn7x3djfanlix3yzf1cy6zf854g70gq2d93ix9gis7knv"; depends=[]; }; CEGO = derive2 { name="CEGO"; version="2.2.0"; sha256="0k01fb8bciq3m2rcqcicrlhx6av46sdczgcyn8df1f3pr28l1fyf"; depends=[DEoptim fastmatch MASS Matrix ParamHelpers quadprog]; }; CENFA = derive2 { name="CENFA"; version="0.1.0"; sha256="1bxrqvi67s93mvkbigb8l7rrn2j2ix7qw7vcxf4dbwd7xf3qqv6q"; depends=[doSNOW foreach magrittr pbapply raster Rcpp snow sp]; }; CEoptim = derive2 { name="CEoptim"; version="1.2"; sha256="0bbjrhl63cbx1rsr5gclbqhjpnjid8ynk2ygaf1chf8z381n7650"; depends=[MASS msm sna]; }; @@ -500,15 +519,16 @@ in with self; { CHMM = derive2 { name="CHMM"; version="0.1.1"; sha256="07fdvnwhblwvljbl2z0vs42nwki67yl5ly3fj40p50k3rnqqmavj"; depends=[mclust]; }; CHNOSZ = derive2 { name="CHNOSZ"; version="1.1.3"; sha256="07j1xvv6rn57hirxw1dajnvk9hmj3r9bgk4fckzmmpclf22z4mwq"; depends=[]; }; CHsharp = derive2 { name="CHsharp"; version="0.4"; sha256="19mb5zzi9x4pm2z9jbha5dz4k5f1iqjv31aisyv4qh14k5ysdz2i"; depends=[KernSmooth scatterplot3d]; }; - CIAAWconsensus = derive2 { name="CIAAWconsensus"; version="1.2"; sha256="0s3a9ay0l9n5kc6q0wb7f9625vba4giz1pdg3ikq4h4zhp1ldq62"; depends=[Matrix mvtnorm numDeriv stringr]; }; + CIAAWconsensus = derive2 { name="CIAAWconsensus"; version="1.3"; sha256="0yhay4fp5lyf0sdcf807yvys17qz9cr5f5ikim25mq336p7fp03x"; depends=[Matrix mvtnorm numDeriv stringr]; }; CIEE = derive2 { name="CIEE"; version="0.1.1"; sha256="03kq9cp0v41y0r2l9j5imcrsail2xsvlzhhhsrw454d4s9gqdql9"; depends=[survival]; }; CIFsmry = derive2 { name="CIFsmry"; version="1.0.1.1"; sha256="1m2m2zvg9ghy3bm2sll7jp4xm2vw58kc5xaxd2c9k82771m3a4j0"; depends=[]; }; CINID = derive2 { name="CINID"; version="1.2"; sha256="0pkgzi2j0045p10kjvnq8f4j1agzrqfw0czvvfrzj9yjfpj8xc99"; depends=[]; }; - CINNA = derive2 { name="CINNA"; version="1.1.41"; sha256="1s0hcqikb02xnz6kw4aapl5dw6p1dksjnr3yhhnfw6wibbkls1hc"; depends=[centiserve circlize corrplot dendextend factoextra FactoMineR GGally ggplot2 igraph network pheatmap plyr qdapTools Rtsne sna viridis]; }; + CINNA = derive2 { name="CINNA"; version="1.1.50"; sha256="19xh2n73b0qbnj9pihbwxkvaq96d459mj4wrkcnzbh93dj6841an"; depends=[centiserve circlize corrplot dendextend factoextra FactoMineR GGally ggplot2 igraph intergraph network pheatmap plyr qdapTools Rtsne sna viridis]; }; CISE = derive2 { name="CISE"; version="0.1.0"; sha256="10mbi4v8dfdc9ngnrrmxpng8fnig5m8nv7799jksbcf6pnj8yv51"; depends=[far gdata glmnet MASS Matrix rARPACK]; }; CITAN = derive2 { name="CITAN"; version="2015.12-2"; sha256="08h91q7529q04izgqw3ahm4r0zjpwnwyc0vynykvv9fz2fkbk7wb"; depends=[agop DBI hash RGtk2 RSQLite stringi]; }; CIplot = derive2 { name="CIplot"; version="1.0"; sha256="0hx3dn7d8hvsh75747d9046iqriy3bjnchph8xllnvlhkrm4di1f"; depends=[MASS multcomp]; }; CJAMP = derive2 { name="CJAMP"; version="0.1.0"; sha256="0kvmb8vh3dfhdavmvkfmr8293p5lgjws6p7kzmc7r9h6bzmc2hcr"; depends=[optimx]; }; + CKLRT = derive2 { name="CKLRT"; version="0.2.3"; sha256="1d8sg3ncns3fpjaghz1h1z9nfrl31v09xijrzzsias8xjrpi191b"; depends=[MASS mgcv nlme Rcpp RcppEigen]; }; CLA = derive2 { name="CLA"; version="0.90-1"; sha256="1rpklm21i9rjw0vfhaz9brq9571yjynwfhpv6dp6fbl3cj7bwb8g"; depends=[]; }; CLME = derive2 { name="CLME"; version="2.0-10"; sha256="1jlib4pi3ifhfwmvd1jj4kkl6npirykhz0wlvv19nvhf3514y04s"; depends=[isotone lme4 MASS nlme openxlsx prettyR shiny stringr]; }; CLSOCP = derive2 { name="CLSOCP"; version="1.0"; sha256="0rkwq9rl2ph4h5zwb2i3yphjyzxmh6b6k23a8gcczycx6xdq4yhw"; depends=[Matrix]; }; @@ -516,29 +536,31 @@ in with self; { CMF = derive2 { name="CMF"; version="1.0"; sha256="0hvqcbmg2vd0i1rjb1m1bkrbv2vkj1siank1v8w0n5b6881cyz7q"; depends=[Rcpp]; }; CMLS = derive2 { name="CMLS"; version="1.0-0"; sha256="1542qqsl6sksrcpwhnn55d260hkbmy4ikd0v2an96yxk5w95spvn"; depends=[quadprog]; }; CMPControl = derive2 { name="CMPControl"; version="1.0"; sha256="0cp29cibiydawsl0cq433l9abdivr16b431zlrh45wzr5kzfcs0v"; depends=[compoisson]; }; - CMatching = derive2 { name="CMatching"; version="2.1"; sha256="172b5pzs6z8rdziqn1cq0s4zcr5hd2ql3wjslf6rv7zn9afkmjdr"; depends=[lme4 lmtest Matching multiwayvcov]; }; + CMatching = derive2 { name="CMatching"; version="2.2.1"; sha256="0q59k84vjvn8q75skrv31jqpjf6zqghkdk1saiwn6ys8rja03m4l"; depends=[lme4 lmtest Matching multiwayvcov]; }; CMplot = derive2 { name="CMplot"; version="3.3.1"; sha256="01qpy7bb3503i3b8v4psrxbx9ff5vzcv54j55mdr1bphwmnp1kzq"; depends=[]; }; - CNLTreg = derive2 { name="CNLTreg"; version="0.1"; sha256="1fjc45kv2nm902vpfynfxj0n7nm2prazm44nhg2m30vd6l1ijisv"; depends=[adlift miscTools nlt]; }; - CNLTtsa = derive2 { name="CNLTtsa"; version="0.1"; sha256="0s98ckg6ms3kh49b8la2d8rsdb0m4m0v8gdbj48nqxncdvg25qk4"; depends=[adlift CNLTreg fields nlt]; }; + CNLTreg = derive2 { name="CNLTreg"; version="0.1-2"; sha256="07yi0ajil1113663v3gp5d3453r4l9qm442jnpydx4ygvjk7m2ha"; depends=[adlift miscTools nlt]; }; + CNLTtsa = derive2 { name="CNLTtsa"; version="0.1-2"; sha256="1vy0jjg6s8yvsvkx4pin183y5bnikm5cmjcpa9znz9dj1w6hwr5r"; depends=[adlift CNLTreg fields nlt]; }; CNOGpro = derive2 { name="CNOGpro"; version="1.1"; sha256="1frsmhfqrlg1vsa06cabqmrzngq4p5gqwyb9qgnsgg81a9ybm6l8"; depends=[seqinr]; }; + CNVScope = derive2 { name="CNVScope"; version="1.9.7"; sha256="1xj82nwkv27wfwrks9rckdgmhlqfl4n0zmcqqa3f9ryx79jm7zbl"; depends=[BiocManager biomaRt blockseg BSgenome_Hsapiens_UCSC_hg19 circlize ComplexHeatmap data_table doParallel dplyr DT foreach GenomicFeatures GenomicInteractions GenomicRanges ggplot2 heatmaply HiCseg htmltools htmlwidgets igraph InteractionSet IRanges jointseg logging magrittr Matrix matrixStats numbers OpenImageR plotly plyr RCurl readr reshape2 rslurm rtracklayer S4Vectors shiny shinycssloaders shinyjs shinythemes spatialfil tidyr visNetwork]; }; CNVassocData = derive2 { name="CNVassocData"; version="1.0"; sha256="17r3b1w9i9v6llawnjnrjns6jkd82m2cn9c90aif8j0bf4dmgdli"; depends=[]; }; CNprep = derive2 { name="CNprep"; version="2.0"; sha256="08dpjikx3ldqzw2kwb12q0kbw15qzl09srjdfs0sz9si0x6bfxs6"; depends=[mclust rlecuyer]; }; CNull = derive2 { name="CNull"; version="1.0"; sha256="14hy86zg18hqxi63bfzrpkz70yrzfxp2v2pva5xnrvx9dmlyz820"; depends=[ape Matrix PhyloMeasures Rcpp]; }; COBRA = derive2 { name="COBRA"; version="0.99.4"; sha256="1r1cw12d7c148pcgcg08bfsr1q1s736kfpyyss6b4d7ny7wgmqy4"; depends=[]; }; COCONUT = derive2 { name="COCONUT"; version="1.0.2"; sha256="1qjrhxn6dkxyimdca3nslaiw3hncfpk1pk4v01mcrnz550z001nz"; depends=[]; }; COMBAT = derive2 { name="COMBAT"; version="0.0.4"; sha256="0m700pl33frdpc9y16y4zyh1ixpardh0r5kmz8a78jrh1acn30id"; depends=[corpcor mvtnorm]; }; + COMBIA = derive2 { name="COMBIA"; version="1.0.6"; sha256="1640bfl5sn00czxnl6j2rrdrzc5arvfpy5b66viybxm2qqbiw49w"; depends=[gdata hash lattice latticeExtra oro_nifti]; }; COMPoissonReg = derive2 { name="COMPoissonReg"; version="0.4.1"; sha256="14gjrf2hj7dy4hd0qnh6vqjzh7gc6g7gm7rh1d8dingkjwmjzrqb"; depends=[]; }; CONDOP = derive2 { name="CONDOP"; version="1.0"; sha256="0si9nm93wk9lif3r6jh2nxr4sjq1iqyfavbykja3zcy6yn05i19s"; depends=[earth GenomeInfoDb GenomicRanges IRanges mclust plyr randomForest rminer S4Vectors seqinr]; }; CONS = derive2 { name="CONS"; version="0.1.1"; sha256="0w0rca4z3hij0lbabpdnhv2lb52gx574g7bqp6q16772pi4685hf"; depends=[FactoMineR gridExtra gWidgets pander raster readxl REdaS]; }; CORE = derive2 { name="CORE"; version="3.0"; sha256="0wq9i7nscnzqiqz6zh6hglm7924261bw169q3x6l9i6jgqhvn32d"; depends=[]; }; - CORElearn = derive2 { name="CORElearn"; version="1.52.1"; sha256="0i37dpnphdq9pcb94rzpy80gw88zrfy8diiig94p1gdj0dk57b0f"; depends=[cluster nnet rpart]; }; + CORElearn = derive2 { name="CORElearn"; version="1.53.1"; sha256="01jjw32awqjlvrn2wanljr3v4nphjb8mknzmz4skyhx0zgdm369x"; depends=[cluster nnet rpart]; }; CORM = derive2 { name="CORM"; version="1.0.2"; sha256="0g5plafx2h1ija8jd6rxvy8qsrqprfbwbi1kq1p4jdr9miha20nv"; depends=[cluster limma]; }; COSINE = derive2 { name="COSINE"; version="2.1"; sha256="10ypj849pmvhx117ph3k1jqa62nc4sdmv8665yahds7mh0ymhpjj"; depends=[genalg MASS]; }; COUNT = derive2 { name="COUNT"; version="1.3.4"; sha256="02f7779fy0d2bql88x5v9csbxljhnyvl8wb8h83xrmwl7kaxsdpy"; depends=[MASS msme sandwich]; }; COUSCOus = derive2 { name="COUSCOus"; version="1.0.0"; sha256="1ykqi72v8v1b3g9qy6h34dvk5fynzf1rl2mby65p08axmaba5798"; depends=[bio3d matrixcalc]; }; CP = derive2 { name="CP"; version="1.6"; sha256="18zblf13riiz3mq3hkvg6vhiwjzpsn6mvgc2p0bqyldy98v4aisd"; depends=[survival]; }; CPBayes = derive2 { name="CPBayes"; version="0.3.0"; sha256="1vzh9sgij194j7kiwjgba7xsqffiif9zamj9gdv2lk91wdcqaxid"; depends=[forestplot MASS]; }; - CPE = derive2 { name="CPE"; version="1.4.4"; sha256="09sqp2a0j43jr9ya9piv8575rwd5fdvwmiz4chv75r3mw8p128mn"; depends=[rms survival]; }; + CPE = derive2 { name="CPE"; version="1.5.1"; sha256="0n3pd6daj0mzhh547syh7nz8iys6q27igqngldb8zd4ib4778603"; depends=[rms survival]; }; CPMCGLM = derive2 { name="CPMCGLM"; version="1.2"; sha256="07hx2ik5zg05w1h6i94398mp54q958phws9ydgp6syjqlp9dpf1p"; depends=[abind mvtnorm plyr]; }; CPP = derive2 { name="CPP"; version="0.1.0"; sha256="1kdf43pnavjbmxkvrj78fiwl0ykln9x9ck8pcivhj9q5rsfbhbh4"; depends=[ineq kappalab mc2d]; }; CPsurv = derive2 { name="CPsurv"; version="1.0.0"; sha256="1r68pp3jbcbwgfac132h30qx6ah780aychr49rlncn17xbdalxsh"; depends=[muhaz survival]; }; @@ -547,18 +569,19 @@ in with self; { CRANsearcher = derive2 { name="CRANsearcher"; version="1.0.0"; sha256="09gw1s28gb0l2cn4w3asl6zlr7wfacxwafbdrayajwckyfkjl5dl"; depends=[curl dplyr DT lubridate miniUI shiny shinyjs stringr]; }; CREAM = derive2 { name="CREAM"; version="1.1.1"; sha256="1lccpwn6c5pmykgf689gvvpqdcilkys4vclpxjhllhanjrfhcs3q"; depends=[]; }; CRF = derive2 { name="CRF"; version="0.3-16"; sha256="1vw8gkrhymqi7x3p257k8vvn4df4s16w8hhm1myzhcp6bf44jqg4"; depends=[Matrix]; }; - CRM = derive2 { name="CRM"; version="1.1.1"; sha256="09h6xvqc2h2gxhdhc7592z93cnw16l549pn9i26ml0f0n20hljmf"; depends=[]; }; + CRM = derive2 { name="CRM"; version="1.2.4"; sha256="0jv2z1y3zyj1m86p4pmqww58hj8pvid1ss6ym67y46n9srzxsmj5"; depends=[]; }; CRPClustering = derive2 { name="CRPClustering"; version="1.2"; sha256="19m7jg6ck2gqmry2p35h3vv8msm4w1x7qwwmm746r646q7w9ylml"; depends=[dplyr lucid MASS mvtnorm png randomcoloR]; }; CRTSize = derive2 { name="CRTSize"; version="1.0"; sha256="1d45zx26bf0zk0piham69gvb8djqf48g6iisbldv0ds3s2hhcsin"; depends=[]; }; CRTgeeDR = derive2 { name="CRTgeeDR"; version="2.0"; sha256="1fzw8618k152b8d4d6wmzp0bfkz2grwp0rqsplwvfdx23nxq437n"; depends=[ggplot2 MASS Matrix]; }; - CSESA = derive2 { name="CSESA"; version="1.0.4"; sha256="05nijz8x5sgmc4aykxsqg2i1n50zx0kd5lqi5a1fwxbx2miw27sv"; depends=[Biostrings]; }; - CSFA = derive2 { name="CSFA"; version="1.1.0"; sha256="0dqva3i4jhlbjmqwngxqgl6prfs3cxb219jqc7yvjjk8n4nz8jim"; depends=[elasticnet fabia FactoMineR pls randomcoloR snowFT]; }; + CSESA = derive2 { name="CSESA"; version="1.1.1"; sha256="1q3rdfw90kjk3incn8wzf57032f63z0p0zcdndw30s2fhv2si7bn"; depends=[Biostrings]; }; + CSFA = derive2 { name="CSFA"; version="1.2.0"; sha256="1nkyhk8qhrrlx8v26yw86l954m4xfcxma4pqbhgw95jvqql5h3li"; depends=[elasticnet fabia FactoMineR pls randomcoloR snowFT]; }; CSclone = derive2 { name="CSclone"; version="1.0"; sha256="0lqsqsgh2sf44fr1r7g179556v294yr1wy7x4320g7adxshrwyh5"; depends=[DNAcopy lpSolve mcclust moments]; }; - CSeqpat = derive2 { name="CSeqpat"; version="0.1.1"; sha256="1vgwkiin485n3bks09bg4ricjfw1l8k5qfv7l0xp50zha3r18g1y"; depends=[NLP tm]; }; + CSeqpat = derive2 { name="CSeqpat"; version="0.1.2"; sha256="1nqk873cagpn4fba4rmyzb6hni1p5lqcvsr9givrcm0gfx756w1h"; depends=[NLP tm]; }; CTM = derive2 { name="CTM"; version="0.2"; sha256="0h1lpygjq46nwkn4km49bngvxmgrnh3csrfln3yjr9yyzs7d3lz1"; depends=[jiebaR plyr]; }; CTRE = derive2 { name="CTRE"; version="0.1.0"; sha256="1v2327g78rva3n7lvn66rznzzf2qbdak0jp8gakgljpl30kpkv5v"; depends=[assertthat MittagLeffleR plyr tea zoo]; }; - CTT = derive2 { name="CTT"; version="2.3.2"; sha256="1f4ba2qnxx5vlj64sxz4ynby9hv7f32v6ls8yn887z51m33xdxi8"; depends=[]; }; + CTT = derive2 { name="CTT"; version="2.3.3"; sha256="02z354gf7rzh9xzyflmsag4hgmqgv3sr9s9ja903rwdz1pjqrlff"; depends=[]; }; CTTShiny = derive2 { name="CTTShiny"; version="0.1"; sha256="1c9vsiqyig6kfjpy3dfrysc466h4v9530m49aynz65i1njplswyh"; depends=[CTT ltm psych shiny shinyAce]; }; + CTTinShiny = derive2 { name="CTTinShiny"; version="0.1.0"; sha256="1dc6kaxajkvviszmrcvhh9cg2k8g1hbpf1f6fg3wlgnb80fsx9b7"; depends=[CTT foreign shiny]; }; CUB = derive2 { name="CUB"; version="1.1.2"; sha256="031jkzh6cr8gd2naqv54xs3vlrqmcbl9d2in66kd0dr2i41l3qj7"; depends=[Formula]; }; CUFF = derive2 { name="CUFF"; version="1.5"; sha256="1cphwhimzmsljfjvfvpld4mixznlsg5azzv7dwrgnh8q4wpnaxpc"; depends=[openxlsx xtable]; }; CUMP = derive2 { name="CUMP"; version="2.0"; sha256="0rdscywmi4sylpjpr8r472iapddizb1mqyrd532cvw6frxins7w0"; depends=[]; }; @@ -574,10 +597,11 @@ in with self; { CaDENCE = derive2 { name="CaDENCE"; version="1.2.5"; sha256="1z3p5y1l67r470x6wrhnyjvw1ndppcm08fpj99x122j7kn6byff2"; depends=[pso]; }; Cairo = derive2 { name="Cairo"; version="1.5-9"; sha256="1x1q99r3r978rlkkm5gixkv03p0mcr6k7ydcqdmisrwnmrn7p1ia"; depends=[]; }; Calculator_LR_FNs = derive2 { name="Calculator.LR.FNs"; version="1.3"; sha256="03qg9rnz623dwnp68xhhsh9788s49n6xp0migg1nnjaqhrahlgdd"; depends=[]; }; - CaliCo = derive2 { name="CaliCo"; version="0.1.0"; sha256="1fz4sx6wsrkmcfjjgjn7z26m266m844qz8ms4vk6bnhx0h1rp6qa"; depends=[coda DiceDesign DiceKriging FactoMineR ggplot2 MASS Matrix R6 Rcpp RcppArmadillo testthat]; }; - CalibrateSSB = derive2 { name="CalibrateSSB"; version="1.0"; sha256="1r3318rzh29cgq72gdp16z60xkan7hyh1vj4gjg3pzbxy8zawqxx"; depends=[survey]; }; + CaliCo = derive2 { name="CaliCo"; version="0.1.1"; sha256="16a6hfd3s7dzb6mvpyn4fkdi5irfjsbal7niky2g6p54290va982"; depends=[coda DiceDesign DiceKriging ggplot2 gridExtra gtools MASS Matrix R6 Rcpp RcppArmadillo]; }; + CalibratR = derive2 { name="CalibratR"; version="0.1.1"; sha256="0ka7amcml15qifwpw4phpn12r9qjn0dvlrlraf3af971yjmwc745"; depends=[doParallel fitdistrplus foreach ggplot2 pROC reshape2]; }; + CalibrateSSB = derive2 { name="CalibrateSSB"; version="1.1"; sha256="0rqa6xbxzqv0ks3i4pmmzczhf6g3ss6mb96g3d71y9xa6pzdxjjp"; depends=[survey]; }; Canopy = derive2 { name="Canopy"; version="1.3.0"; sha256="0979hpphzhf4v71jx0shh3l8nffmpsn9l6f8ip2wxzcyx571i1wd"; depends=[ape fields pheatmap scatterplot3d]; }; - CarletonStats = derive2 { name="CarletonStats"; version="1.3"; sha256="1a8ic2ny2zkqy6xsnzhlc3hybhk200d8jbdbjfy7jav7n757kr0y"; depends=[]; }; + CarletonStats = derive2 { name="CarletonStats"; version="2.0"; sha256="0pgzvw6gf8kjv8ndprwp4wlgdgh5sb75ga8z5syfw57fb05v7ac3"; depends=[]; }; CaseBasedReasoning = derive2 { name="CaseBasedReasoning"; version="0.1"; sha256="0hwll17j0br8sr0ci3bfa5rx4r36hr7myq7b5fav664zjxdh9wr4"; depends=[cowplot data_table dplyr magrittr R6 ranger Rcpp RcppArmadillo RcppParallel rms survival tidyverse]; }; CatDyn = derive2 { name="CatDyn"; version="1.1-0"; sha256="0bdixcf1iwbmjd2axi6csrzms25ghdj4r6223qhk2b54wlmbzaiz"; depends=[BB optimx]; }; CatEncoders = derive2 { name="CatEncoders"; version="0.1.1"; sha256="1q9wzq06lac8z9y8b65alsxpb48bw8wqmifd893kknk51xq6r9kl"; depends=[data_table Matrix]; }; @@ -596,16 +620,17 @@ in with self; { CerioliOutlierDetection = derive2 { name="CerioliOutlierDetection"; version="1.1.9"; sha256="0s3pd4y165v69m4wmg9jlc7dl4gz64la9yic67l3n4242wa84p19"; depends=[robustbase]; }; CfEstimateQuantiles = derive2 { name="CfEstimateQuantiles"; version="1.0"; sha256="1qf85pnl81r0ym1mmsrhbshwi4h1iv19a2wjnghbylpjaslgxp6i"; depends=[]; }; ChIPtest = derive2 { name="ChIPtest"; version="1.0"; sha256="1yn5b5s56k2dbhw6damxj18xbaiz180ym7fiq2i3p2gkcgwpddbz"; depends=[]; }; - ChainLadder = derive2 { name="ChainLadder"; version="0.2.6"; sha256="0mpb7br76ng3m9g4ncx2g628zmjyf1rvi3lyxmfsmilpq6vh30n1"; depends=[actuar cplm ggplot2 lattice MASS Matrix reshape2 statmod systemfit tweedie]; }; + ChainLadder = derive2 { name="ChainLadder"; version="0.2.7"; sha256="15d81hydbgz3j4cv4br35q9jiqlbiz8q27vylqg319y8z1p6wbgb"; depends=[actuar cplm ggplot2 lattice MASS Matrix reshape2 statmod systemfit tweedie]; }; ChangepointTesting = derive2 { name="ChangepointTesting"; version="1.0"; sha256="1nb78b1jpp0wpy9ah2fxkh53hlmb2f82b68msbfhancb8zp2lclv"; depends=[]; }; - ChannelAttribution = derive2 { name="ChannelAttribution"; version="1.13"; sha256="1nkz8n3a6f0xl56py45pv0rp0n0kmz3a1m616w38mjjlcypdalwq"; depends=[Rcpp RcppArmadillo]; }; + ChannelAttribution = derive2 { name="ChannelAttribution"; version="1.14"; sha256="1rasn1ghk4k0crdvxs9l8xjajdxvjsy7rwx9gz0nf41rw8pm16qa"; depends=[Rcpp RcppArmadillo]; }; ChannelAttributionApp = derive2 { name="ChannelAttributionApp"; version="1.1"; sha256="0qy92ij1riynz7dhri3z85pafww5w9j1gx1bcgr8phlr32a7had7"; depends=[ChannelAttribution data_table ggplot2 shiny]; }; Chaos01 = derive2 { name="Chaos01"; version="1.1.1"; sha256="0ibxibmlyc6wkhqj2achwkwdkniin60y8xh8b80nq6ggmm7w9crw"; depends=[]; }; ChaosGame = derive2 { name="ChaosGame"; version="0.3"; sha256="0nfp2qnhzpncs0yd5rknspin6c4hidqhxdd973ysiivg63wxwz8d"; depends=[colorRamps ggplot2 gridExtra plot3D RColorBrewer rgl sphereplot]; }; CharFun = derive2 { name="CharFun"; version="0.1.0"; sha256="0cqy1na1lh9w3nspy68yylali9y5b64jlgh4fyzas556239dnyk7"; depends=[Bessel]; }; ChargeTransport = derive2 { name="ChargeTransport"; version="1.0.2"; sha256="0mq06ckp3yyj5g1z2sla79fiqdk2nlbclm618frhqcgmq93h0vha"; depends=[]; }; CheckDigit = derive2 { name="CheckDigit"; version="0.1-1"; sha256="0091q9f77a0n701n668zaghi6b2k3n2jlb1y91nghijkv32a7d0j"; depends=[]; }; - ChemoSpec = derive2 { name="ChemoSpec"; version="4.4.97"; sha256="0kdcwv9kncv2r5mabp0mf9bmnajcnxmqavrl2lpn3d2pji6pv1qq"; depends=[plyr]; }; + ChemoSpec = derive2 { name="ChemoSpec"; version="5.0.88"; sha256="1c2c4fd4ajnzca82c9jkp81dxgra15bhxdhzdbnxjxzfifq1gsff"; depends=[ChemoSpecUtils plyr]; }; + ChemoSpecUtils = derive2 { name="ChemoSpecUtils"; version="0.1.62"; sha256="0yakbzyi1xdnydjixcp53rah8qcm7sg4j18ha2x1qapmzalpbr0y"; depends=[plyr RColorBrewer robustbase]; }; ChemometricsWithR = derive2 { name="ChemometricsWithR"; version="0.1.11"; sha256="00z09bplm5qvd31y7m4b4knsrl0n27j9635m1gdak6lg4db4nxrd"; depends=[devtools kohonen MASS pls]; }; ChoR = derive2 { name="ChoR"; version="0.0-4"; sha256="08mildsx542zfm0kcdakcv7c71hb4jgbcq1lhidf0fz76zj1pzk1"; depends=[commonsMath rJava]; }; ChocoLattes = derive2 { name="ChocoLattes"; version="0.1.0"; sha256="0ircdar4fswaf34969gzgn83ia891jvwl29jn4s9a87cc4qagzgr"; depends=[ggplot2 knitr plotly R_utils rmarkdown WriteXLS XML]; }; @@ -619,33 +644,36 @@ in with self; { Cite = derive2 { name="Cite"; version="0.1.0"; sha256="1gfjirhswh4dkz88z4gl8m8jznqrvcgd4z3mnszyg1k5w3avlf1q"; depends=[miniUI RefManageR rstudioapi shiny]; }; CityPlot = derive2 { name="CityPlot"; version="2.0"; sha256="0lskgxmagqjglvpq39hgbygkf4qp28i2bj6b4m2av1s3pzb4465g"; depends=[]; }; CityWaterBalance = derive2 { name="CityWaterBalance"; version="0.1.0"; sha256="0nvm6bv2cxszjf33xgn1xcvhrgrgbdcar0jahwf7bs03gdlpmgi1"; depends=[dataRetrieval dplyr EcoHydRology geoknife lubridate reshape2 tgp xts zoo]; }; - Ckmeans_1d_dp = derive2 { name="Ckmeans.1d.dp"; version="4.2.1"; sha256="1jx5419r2c55qxh4kfjdm37594bqcalqgdrqihsr8aafxhh96b8z"; depends=[]; }; + Ckmeans_1d_dp = derive2 { name="Ckmeans.1d.dp"; version="4.2.2"; sha256="15arwppq78zvjxhvhm4kal0x0a9cwjbgmi5xhq3vch8ppwzvm2mh"; depends=[Rcpp]; }; ClamR = derive2 { name="ClamR"; version="2.1-1"; sha256="0raz1n79g24a9mc93zj49r20xcmdziw6vvcw5sd3qyjp1ycia13c"; depends=[]; }; ClassComparison = derive2 { name="ClassComparison"; version="3.1.6"; sha256="1y0yx3qnd5mkbqjxyfjjg2y0c0b9jjwn71z97h82ya5ci3fffndi"; depends=[Biobase oompaBase]; }; - ClassDiscovery = derive2 { name="ClassDiscovery"; version="3.3.7"; sha256="03lp1dbp2mzrzk1hn7nkp7nm1ngs0qndlk3zz7qjh3a67x7xr5p1"; depends=[Biobase cluster mclust oompaBase oompaData]; }; + ClassDiscovery = derive2 { name="ClassDiscovery"; version="3.3.9"; sha256="0hwaks634vg7lslb4kr5rl9p5y7n0ypp2v088a1ix9r40ag4a75p"; depends=[Biobase cluster mclust oompaBase oompaData]; }; CleanBSequences = derive2 { name="CleanBSequences"; version="0.4.0"; sha256="12s24v2kfyc32pm34ibw58zzjqhzwlrqrkhl0m70jcqvn50b5r98"; depends=[Biostrings]; }; ClickClust = derive2 { name="ClickClust"; version="1.1.5"; sha256="0b46f453mffg4ym6yvmh7g3v05mc9gphwfra75j28y1425s87yvw"; depends=[]; }; + CliftLRD = derive2 { name="CliftLRD"; version="0.1-1"; sha256="0qsdv568klxg6chgw329jbfjmf6w61hly2vxp90yzdfkca03z2s4"; depends=[CNLTreg liftLRD]; }; ClimClass = derive2 { name="ClimClass"; version="2.1.0"; sha256="1r836md31z2r5d9xckkbalzbhm4kf5paljv71kxpy53q92k7yi91"; depends=[geosphere ggplot2 reshape2]; }; ClimDown = derive2 { name="ClimDown"; version="1.0.2"; sha256="0dbv5vn985bi9nqxhq7jcj6k38s8dlbqnln3adgd0ih2fwilvalg"; depends=[abind fields foreach ncdf4 PCICt seas udunits2]; }; + ClimProjDiags = derive2 { name="ClimProjDiags"; version="0.0.1"; sha256="0ylw4hb8isy0ixc7ai3wda8pr67slrc5999kda688p9qi699nip4"; depends=[climdex_pcic multiApply PCICt plyr]; }; ClinicalTrialSummary = derive2 { name="ClinicalTrialSummary"; version="0.1.0"; sha256="1lqf2ksgchl1j5hfkz7r5yczvkjgi3238k8nkfkd70nyil9vjq06"; depends=[Rcpp]; }; CluMix = derive2 { name="CluMix"; version="2.1"; sha256="080gd6v8yj83djmf4wg7cwk6q6w6gsg4xfsgw5qd6z8h3kpyn45m"; depends=[Biobase ClustOfVar DescTools extracat FD gplots Hmisc marray Matrix]; }; - ClueR = derive2 { name="ClueR"; version="1.3"; sha256="04axd5wrh8xszyvm6kcvhr3qs0rx9nj0z99j26qijf5w80lmhaki"; depends=[e1071]; }; + ClueR = derive2 { name="ClueR"; version="1.4"; sha256="0awl3ag48idg0396hcgqrh5f16mbgximr5xbxjiimib5zysdc558"; depends=[e1071]; }; ClusVis = derive2 { name="ClusVis"; version="1.1.0"; sha256="17cn3hm37jv10aybaidy89kch6814hdi8g44s94xa9li7nixzass"; depends=[MASS mgcv mvtnorm Rcpp RcppArmadillo Rmixmod VarSelLCM]; }; ClustGeo = derive2 { name="ClustGeo"; version="2.0"; sha256="1p5k2w1k7hnacbazzj2yhxh4z2jngnsl4v5a9b3c8z1dr4nhcwxc"; depends=[sp spdep]; }; ClustMMDD = derive2 { name="ClustMMDD"; version="1.0.4"; sha256="0sblf3crpai53dflhyi27yn6mg0xyy9dxhwsk8j57sq5vr50x686"; depends=[Rcpp]; }; ClustOfVar = derive2 { name="ClustOfVar"; version="1.1"; sha256="0grhkab7s58ji4cf7cxh7ahd2dxrj8aqfdf3119b40zxkxbwxcr0"; depends=[PCAmixdata]; }; - ClustVarLV = derive2 { name="ClustVarLV"; version="1.5.1"; sha256="11zydj3iq15sg84kny6nklpmh8wj9j9nklkknzfqnaagai8jgsmy"; depends=[Rcpp]; }; + ClustVarLV = derive2 { name="ClustVarLV"; version="1.6.0"; sha256="1425qgkr4ypbgi59phb9m0haahqc9g4jvjv5lmizaxph10r6gimi"; depends=[doParallel foreach iterators Rcpp RcppEigen]; }; Cluster_OBeu = derive2 { name="Cluster.OBeu"; version="1.2.1"; sha256="18is8aa496qr7afmyqy12s267ans0hhzy0xs8nzr3qp70mwrbbh1"; depends=[car cluster clValid data_tree dendextend jsonlite mclust RCurl reshape reshape2 stringr tibble]; }; ClusterBootstrap = derive2 { name="ClusterBootstrap"; version="1.0.0"; sha256="0m1lfp27vn3ybwimwkrihff5v2bvdc4c46x8bha8hw0wma14lw5i"; depends=[]; }; - ClusterR = derive2 { name="ClusterR"; version="1.1.2"; sha256="04charq9ydxiy8qvign3nc3ksg5v8d7jq39kdx7nndwgyjsidaic"; depends=[FD ggplot2 gmp gtools OpenImageR Rcpp RcppArmadillo]; }; + ClusterR = derive2 { name="ClusterR"; version="1.1.5"; sha256="16jx47d1w8yshg2w537399ck3z5wfsazwqfbv0kmvi0iw8ss9bka"; depends=[FD ggplot2 gmp gtools OpenImageR Rcpp RcppArmadillo]; }; ClusterRankTest = derive2 { name="ClusterRankTest"; version="1.0"; sha256="01gzalhibqcdx3a6yc2cm1v77rscva73v5m5m0qkrgqdp9c8ph2a"; depends=[]; }; ClusterStability = derive2 { name="ClusterStability"; version="1.0.3"; sha256="1laa5m3y1rc7jr8q3i9qb3izs7qmadz169w9xm8q3mm3834ngn9b"; depends=[cluster clusterCrit copula Rcpp WeightedCluster]; }; ClusteredMutations = derive2 { name="ClusteredMutations"; version="1.0.1"; sha256="1n31nnvpjh1faw751k8m3ga3wfl0yhdpnszwckqhfzlma1jr8z04"; depends=[seriation]; }; CoClust = derive2 { name="CoClust"; version="0.3-2"; sha256="04xv807785xv9kdspsspx1302ardv8gda06kd590lgawjixai7dh"; depends=[copula gtools]; }; - CoDiNA = derive2 { name="CoDiNA"; version="1.0.0"; sha256="1anc127d4xx1yks5kq2glcv8sijs0sfab9wjs7j9g1aqp97hmk33"; depends=[data_table geometry igraph magrittr plot3D plyr reshape2 visNetwork]; }; + CoDiNA = derive2 { name="CoDiNA"; version="1.1"; sha256="0gmh5s93372hl77s46wpnxp9m2r0zzhb6m1yixpd1450mlkj7rqb"; depends=[data_table igraph magrittr plyr visNetwork]; }; CoFRA = derive2 { name="CoFRA"; version="0.1002"; sha256="0ldf84dxaanww3qkf64mz5gv3yv2rjp9m6dy64xckds66vw6x0m3"; depends=[gplots stringr]; }; CoImp = derive2 { name="CoImp"; version="0.3-1"; sha256="0zj152w4cvnbfl144ggs3ixmyywxf9dqhh04jfydmv2a8n6px89n"; depends=[copula gtools locfit nnet]; }; - CodeDepends = derive2 { name="CodeDepends"; version="0.6.0"; sha256="0gyvafhqrjgy81z3b7ii8p6rxi2zaakvrxb52fnbr616lk8xlmfw"; depends=[codetools graph XML]; }; + CoRpower = derive2 { name="CoRpower"; version="1.0.0"; sha256="1pndjv2qvnlyi8gj41qp03vwv2m4mbj5srs9038ibnmci9ngybnf"; depends=[osDesign survival]; }; + CodeDepends = derive2 { name="CodeDepends"; version="0.6.5"; sha256="0l7kiv3awx50glf5cs841b4zzsff1ml90f0zr868ygvwsr4ps1hq"; depends=[codetools graph XML]; }; CoinMinD = derive2 { name="CoinMinD"; version="1.1"; sha256="0invnbj5589wbs0k2w5aq9qak7axc3s0g9nw85c48lnl0v95s91i"; depends=[MCMCpack]; }; CollapsABEL = derive2 { name="CollapsABEL"; version="0.10.11"; sha256="0libm1wv34av3vm2vvbqcnxjh4y1rwfi8qzjca8qdz9490vngags"; depends=[biganalytics bigmemory collUtils dplyr ggplot2 haplo_stats R_utils rJava RSQLite stringr]; }; CollapseLevels = derive2 { name="CollapseLevels"; version="0.2.0"; sha256="1fn5k83lh0vw5j9vhq0x6ksbkrm25acpslav85wfyknsj9vzmzid"; depends=[dplyr ggplot2 lazyeval magrittr]; }; @@ -659,7 +687,7 @@ in with self; { CombinePortfolio = derive2 { name="CombinePortfolio"; version="0.3"; sha256="0w4mw748ix7jyqfirr8bm93i742y7bpir7q5x1j3r9cqpi9h5zfv"; depends=[]; }; CommEcol = derive2 { name="CommEcol"; version="1.6.5"; sha256="02xra47znnbnsgxy6xinyk2dv8asshd4fgh7bn6qf7m6p4d743pj"; depends=[ape gmp picante vegan]; }; CommT = derive2 { name="CommT"; version="0.1.1"; sha256="1kimm8z3k7p5lxsjnkb203js2rqn09grywxs890fab1hhgssgv2r"; depends=[ape ggplot2 gridExtra phangorn reshape]; }; - CommonJavaJars = derive2 { name="CommonJavaJars"; version="1.0-5"; sha256="0kwf504g1izyy7hxss21dgz26w0spxibdlacrjdh7q10z799hfhh"; depends=[]; }; + CommonJavaJars = derive2 { name="CommonJavaJars"; version="1.0-6"; sha256="0l1zqygklv1s3xr6pjjrji3wmyqg7258qvgwf9c2qjim8p8y8lsr"; depends=[]; }; CommonTrend = derive2 { name="CommonTrend"; version="0.7-1"; sha256="088pg2hy2g2jgs84xawrnsf7gpvrpqjsimkx7g0i5r5fmkx169f9"; depends=[MASS urca]; }; CommunityCorrelogram = derive2 { name="CommunityCorrelogram"; version="1.0"; sha256="1wkrm5lil595sc4ih3qsf4sgvfipzlav0n7339ixqw9zxm2pg4nj"; depends=[vegan]; }; Comp2ROC = derive2 { name="Comp2ROC"; version="1.1.4"; sha256="06hpbid9z1pzg7k4gqp2zn8l7sm375z32fsn54i27qbl3inp7m2d"; depends=[boot ROCR]; }; @@ -682,38 +710,38 @@ in with self; { CondReg = derive2 { name="CondReg"; version="0.20"; sha256="1ffnrjfjcb66i9nyvidkcn4k9pcj4r7xanjwzcxcrj2qm39apkqx"; depends=[]; }; ConfigParser = derive2 { name="ConfigParser"; version="1.0.0"; sha256="0jjh6gz5qcqhirzkmg7a4lnf8n3mjly15x2mvbvdpjkk7iv3w9m3"; depends=[ini R6]; }; ConfoundedMeta = derive2 { name="ConfoundedMeta"; version="1.3.0"; sha256="17l6dfff2v0a4p022qclrmkzi78ga9adkgxgrgk9imz0n9m9424d"; depends=[ggplot2 metafor]; }; - Conigrave = derive2 { name="Conigrave"; version="0.3.0"; sha256="15zfaivawk83xr6gx5ij1xc43z5vgci8x0hglxjnhla02zn0zh9f"; depends=[ggplot2 magrittr miceadds mitools stringdist]; }; + Conigrave = derive2 { name="Conigrave"; version="0.4.1"; sha256="0gralyfz3vq81b34s81mjmblkpbigjqb6r4wkz53xfkd4dbqlchc"; depends=[dplyr ggplot2 magrittr miceadds mitools ppcor stringdist stringr]; }; ConjointChecks = derive2 { name="ConjointChecks"; version="0.0.9"; sha256="097mhiz8zjmmkiiapr3zfx7v35xirg57nqp1swd72dixaa23nhr1"; depends=[]; }; ConnMatTools = derive2 { name="ConnMatTools"; version="0.3.3"; sha256="0zsn3al3di0fd9hkqljpqqy4zbmh97xr6cdi4fzv80ax81fjfqyk"; depends=[]; }; ConsRank = derive2 { name="ConsRank"; version="2.0.1"; sha256="18f1gqa46f8jrcf2zj4njyy78cl0scjs9k8s9mvg0f9dpr44xnan"; depends=[gtools proxy rgl]; }; - ContaminatedMixt = derive2 { name="ContaminatedMixt"; version="1.3.2"; sha256="0761wfjxh26kf4q1qcfzfaj52553yiw1ny6l84r3wzzx4hv893qy"; depends=[caret mclust mixture mnormt mvtnorm]; }; + ContaminatedMixt = derive2 { name="ContaminatedMixt"; version="1.3.3"; sha256="16pkpgvg46xscp6z2xlhlnfzc9048jlgqxxbqa4c90z7dclcmrqk"; depends=[caret mclust mixture mnormt mvtnorm]; }; ContourFunctions = derive2 { name="ContourFunctions"; version="0.1.0"; sha256="1hlff3wx8r1wpkhrz0n27wjnzy6z2q8s9smyb906gwwa9xga7njy"; depends=[]; }; ConvergenceClubs = derive2 { name="ConvergenceClubs"; version="1.4.1"; sha256="0f74aaglby4hmg72957cj3y7jdchy5kq793skl7yidrjc1nk04ib"; depends=[lmtest sandwich]; }; ConvergenceConcepts = derive2 { name="ConvergenceConcepts"; version="1.2.1"; sha256="0kl67ds6369mxl2i93h43r00ji12qkg0k9m4jhcxsb0ydd8rfqgp"; depends=[lattice tkrplot]; }; - CoordinateCleaner = derive2 { name="CoordinateCleaner"; version="1.0-7"; sha256="00x2ijyg1bj2xp679i453d4fd58qp7mfj3pvv3cddh0hl8yfns18"; depends=[geosphere ggplot2 raster rgeos rnaturalearth sp]; }; - Copula_Markov = derive2 { name="Copula.Markov"; version="1.1"; sha256="0pgzrgd9bzf2qh9b7h0y4mmszlxk1wxdwlid3xh7rk7pif3mw3qd"; depends=[]; }; + CoordinateCleaner = derive2 { name="CoordinateCleaner"; version="2.0-3"; sha256="1kb21a8mp3blgnvyzqcwh1zz1mkdq6c759g9dlw3dzp2gnpzl5zp"; depends=[dplyr geosphere ggplot2 raster rgdal rgeos rnaturalearth sp tidyselect]; }; + Copula_Markov = derive2 { name="Copula.Markov"; version="2.1"; sha256="09036bnxb0r0k6lk6sb258yrw4q458nmxinmvnishnq5bifps4v4"; depends=[]; }; CopulaDTA = derive2 { name="CopulaDTA"; version="1.0.0"; sha256="1bx0jvlbhaxf4yhrfpd5l5zp7kmp6f17ckb1y9974sgc7s3hpqcd"; depends=[ggplot2 plyr reshape2 rstan]; }; CopulaREMADA = derive2 { name="CopulaREMADA"; version="1.1"; sha256="044si0nwniiglrcg6mjvs4z3hk6hhhsy49c6pigy6yf1wvvqxp4m"; depends=[matlab statmod tensor]; }; CopulaRegression = derive2 { name="CopulaRegression"; version="0.1-5"; sha256="0dd1n7b23yww36718khi6a5kgy8qjpkrh0k433c265653mf1siq8"; depends=[MASS VineCopula]; }; - CopyDetect = derive2 { name="CopyDetect"; version="1.2"; sha256="1sahrlg1gk1q8ciq0a8hxrlyci5i8jxz8pjpy04alckxdrxfpqbi"; depends=[irtoys]; }; + CopyDetect = derive2 { name="CopyDetect"; version="1.3"; sha256="1g3bwd805h62x93xvvn67acf9v6vn7s7ghxpvjhwcfdfj7fwzh6l"; depends=[mirt]; }; + CorDiff = derive2 { name="CorDiff"; version="1.0"; sha256="12rgfhygrdq1ign4ybr8g171wxic8zbp83n1xdsnqpj910k5jdr5"; depends=[mcc]; }; CorReg = derive2 { name="CorReg"; version="1.2.8"; sha256="18l9aiv2ipvs14ycnzq99yvnkws38wnj42zbk5jqgv33kn37qbx2"; depends=[corrplot elasticnet glmnet lars MASS Matrix mclust mvtnorm Rcpp RcppEigen Rmixmod rpart]; }; - CorShrink = derive2 { name="CorShrink"; version="0.1-5"; sha256="03g5njb191nqiy0lmk8jrwyrnl3w733b8h0krkbsjh2zravyw1xc"; depends=[ashr corpcor corrplot gridExtra Matrix reshape2]; }; + CorShrink = derive2 { name="CorShrink"; version="0.1-6"; sha256="15ay6ws9216lv15mpgldank3klw3zz5j4nwvv1s88jjfn2ln5c1l"; depends=[ashr corpcor corrplot glmnet gridExtra MASS Matrix reshape2 SQUAREM]; }; Corbi = derive2 { name="Corbi"; version="0.4-2"; sha256="0h088iplryaipnfp8svw3djh016z23lv66q51gfbqpvchvjdwypw"; depends=[CRF Matrix mpmi]; }; CorporaCoCo = derive2 { name="CorporaCoCo"; version="1.1-0"; sha256="1s3wlcy6mnw9riivw5lc4gd6bjbsd77m15ipr95g46isdcrli8zb"; depends=[data_table RColorBrewer rlist]; }; CorrBin = derive2 { name="CorrBin"; version="1.5"; sha256="1kg8kms76z127j2vmf7v162n0sh2jqylw4i7c35x5sig4q22m9gy"; depends=[boot combinat dirmult geepack mvtnorm]; }; CorrMixed = derive2 { name="CorrMixed"; version="0.1-13"; sha256="02zg5kmv5qxnasnz872r3z7x7dmdcniq1x5xyfnnb3niwkdjgxzx"; depends=[nlme psych]; }; CorrToolBox = derive2 { name="CorrToolBox"; version="1.5"; sha256="1ggrm144zmi54cqb5l2nif7dn1zb1kn31i1xhxc4jwr7fn380iyi"; depends=[BinNonNor BinOrdNonNor GenOrd moments mvtnorm psych]; }; - CorrectOverloadedPeaks = derive2 { name="CorrectOverloadedPeaks"; version="1.2.14"; sha256="1if4qb1d6mg3435pk3znln8id8fj12n3j9sjv4zn104v2fr90mhr"; depends=[caTools digest xcms XML]; }; + CorrectOverloadedPeaks = derive2 { name="CorrectOverloadedPeaks"; version="1.2.15"; sha256="1hdr2zdms6vbnf6xw079c127diygzp09vqizmmh0yrbc5sx2cmb8"; depends=[bitops digest xcms XML]; }; CorrectedFDR = derive2 { name="CorrectedFDR"; version="1.0"; sha256="15047cfjniljzhznkbzq3hyq221y9k7fa04f69zm0k0sxr627gxg"; depends=[]; }; Correlplot = derive2 { name="Correlplot"; version="1.0-2"; sha256="0prxnbi7ga5d23i0i4qpynfb3zrsgjxam47km6nsj1prakdkrq7w"; depends=[calibrate xtable]; }; CosW = derive2 { name="CosW"; version="0.1"; sha256="12l4w8b5jnr8773hxk7khrdn705x6bdbw7s8z8w95bfbbi12dj6v"; depends=[fdrtool pracma]; }; - CosmoPhotoz = derive2 { name="CosmoPhotoz"; version="0.1"; sha256="04girid6wvgyrk8ha81mdqjx2mmzifz57l1hzcgrdnzmjmm3vlmp"; depends=[arm COUNT ggplot2 ggthemes gridExtra mvtnorm pcaPP shiny]; }; Counterfactual = derive2 { name="Counterfactual"; version="1.1"; sha256="0mz0h5zsmca8fww7nq08m9cld2zbaydn8qad5f2g6vxn382842p9"; depends=[doParallel doRNG foreach Hmisc quantreg survival]; }; - Countr = derive2 { name="Countr"; version="3.4.1"; sha256="1qv773psgmk6ndznl4f2364vadh9qimagm38v5a3xzjnn9dpd23b"; depends=[boot car dplyr flexsurv Formula lattice lmtest MASS Matrix numDeriv optimx pscl RColorBrewer Rcpp RcppArmadillo Rdpack standardize VGAM xtable]; }; - CountsEPPM = derive2 { name="CountsEPPM"; version="2.1"; sha256="1w1l4kbk8c2prq7f38maz0fc44j9za6cmj0vydmcgscb9s6f3mg7"; depends=[expm Formula numDeriv]; }; + Countr = derive2 { name="Countr"; version="3.5.2"; sha256="0f45pxxl09avf4k6lzlhykd1y07hvpc3d68bc2y7nrxhpipwl5yl"; depends=[boot car dplyr flexsurv Formula lattice lmtest MASS Matrix numDeriv optimx pscl RColorBrewer Rcpp RcppArmadillo Rdpack standardize VGAM xtable]; }; + CountsEPPM = derive2 { name="CountsEPPM"; version="3.0"; sha256="0iw7sfrb4yyaagwm1f4q9av5zvzia1mp2ns287ppsw3k248lz0kb"; depends=[expm Formula lmtest numDeriv]; }; CovSel = derive2 { name="CovSel"; version="1.2.1"; sha256="02fsiykbg96ynqw25vfyrams7fs39xjmfhvb23zjbqb7ql6d0xdk"; depends=[dr MASS np]; }; CovSelHigh = derive2 { name="CovSelHigh"; version="1.1.1"; sha256="0dvvpkqml2k00gicpgp475z1rjspq3s37ys1mam29k54qlshhny6"; depends=[bartMachine bindata bnlearn doParallel doRNG foreach glmnet MASS Matching randomForest tmle xtable]; }; - CovTools = derive2 { name="CovTools"; version="0.3.1"; sha256="0ph7rip2lm71qb386diw93n84jaqijz6bqn0i6zgd5gg8j3szx46"; depends=[doParallel expm foreach geigen Matrix mvtnorm pracma Rcpp RcppArmadillo Rdpack shapes]; }; + CovTools = derive2 { name="CovTools"; version="0.5.0"; sha256="1skkv1i7q9sw71c95606ikwq93nlj0bs42w7j70jv1zbvq4sdmfz"; depends=[doParallel expm foreach geigen Matrix mvtnorm pracma Rcpp RcppArmadillo Rdpack shapes]; }; CoxBoost = derive2 { name="CoxBoost"; version="1.4"; sha256="1bxkanc8zr4g3abn4ds5wqibv65flvm4y648fs9s0l4vc9vmyshg"; depends=[Matrix prodlim survival]; }; CoxPhLb = derive2 { name="CoxPhLb"; version="1.0.0"; sha256="1j8dvbjv4h0zdjvwvpswdlsb9pf3gxixh2rhl0m1kxm6f6h5ig0z"; depends=[survival]; }; CoxPlus = derive2 { name="CoxPlus"; version="1.1.1"; sha256="038wsz206bgc0pnzx403b5ihcwhxpkrpxmwvrvqcxf8333pb62l5"; depends=[Rcpp RcppArmadillo]; }; @@ -723,9 +751,9 @@ in with self; { Cprob = derive2 { name="Cprob"; version="1.4.1"; sha256="1m4ys8xpj1jbn3lf8fym935y94dxipiimsf9zxwyw5sy71y7skgq"; depends=[geepack lattice lgtdl prodlim tpr]; }; CreditMetrics = derive2 { name="CreditMetrics"; version="0.0-2"; sha256="16g3xw8r6axqwqv2f0bbqmwicgyx7nwzff59dz967iqna1wh3spi"; depends=[]; }; CreditRisk = derive2 { name="CreditRisk"; version="0.1.3"; sha256="09ks8xlsrbp3an1drcwmmd6df4fsfz61z21ma2p62a1pk0bnc86c"; depends=[fOptions]; }; - CrossClustering = derive2 { name="CrossClustering"; version="3.0"; sha256="0l9cdniqf63x4pfkf6y7c2qh056jwadqw45nz9jk78wamqq8hyqv"; depends=[cluster]; }; + CrossClustering = derive2 { name="CrossClustering"; version="4.0.3"; sha256="05lbdmblwmmv24h46ixxabbrp7mpajyv7raw1p5h0dmsbfbq9hi5"; depends=[assertive cli cluster crayon dplyr flip glue magrittr mclust purrr]; }; CrossScreening = derive2 { name="CrossScreening"; version="0.1.1"; sha256="1gig80r8p611ysn35ajx7xdjj5wnkcf1vspcf0i06dmh75xpm3w9"; depends=[plyr tables]; }; - CrossVA = derive2 { name="CrossVA"; version="0.9.1"; sha256="13skbazs1mh5am70qlwxhvxgfx4gwlzzq6zy3vdzaa3zbykkxlvw"; depends=[lubridate]; }; + CrossVA = derive2 { name="CrossVA"; version="0.9.3"; sha256="1nagbgcih6ix21js91vfpr4yjkhnirblgdmf04nn7ipv2ins8kw6"; depends=[lubridate stringi]; }; CrossValidate = derive2 { name="CrossValidate"; version="2.3.2"; sha256="1dlvkv712rz3gw03c04qlk0l0mqjyds3m3pnbszk4848zby5ac6r"; depends=[Modeler oompaBase]; }; Crossover = derive2 { name="Crossover"; version="0.1-17"; sha256="168j8fl6h7x1pia5f5c18yrf0y1lvznib8clq1mv0imb7cjzkkhi"; depends=[CommonJavaJars crossdes digest ggplot2 JavaGD MASS Matrix multcomp Rcpp RcppArmadillo rJava xtable]; }; CryptRndTest = derive2 { name="CryptRndTest"; version="1.2.2"; sha256="1cg0agwqp1f7pgxdf9wilwparklyfsv900r47fpihnqw3ycvbdai"; depends=[gmp kSamples LambertW MissMech Rmpfr sfsmisc tseries]; }; @@ -734,8 +762,9 @@ in with self; { CuCubes = derive2 { name="CuCubes"; version="0.1.0"; sha256="1cpazar85rp8xfjvy0vxivr61grzvxz7a9mirxvhynln964by6ns"; depends=[]; }; Cubist = derive2 { name="Cubist"; version="0.2.2"; sha256="1m45dpnr5djsfgqlinng6z0f2wbig2vbidlg19r3zcraqwn1agnd"; depends=[lattice reshape2]; }; CustomerScoringMetrics = derive2 { name="CustomerScoringMetrics"; version="1.0.0"; sha256="166v0hbxy4xgbfqh7sx6zsrv4pghqpimx5xry3h2qwynnvr4ng1a"; depends=[]; }; - Cyclops = derive2 { name="Cyclops"; version="1.3.4"; sha256="0iv4rsxy6zngjlbvwkx41np8phv49i6gp0f8yzb5k2azwksx2r3j"; depends=[BH bit ff ffbase MASS Matrix Rcpp RcppEigen RcppParallel survival]; }; - CytobankAPI = derive2 { name="CytobankAPI"; version="1.1.2"; sha256="0mv6f1v6kclz8ima9f0b3qdb7gc85nn2cnfnzb3vqhm9vvibz8ls"; depends=[curl httr jsonlite]; }; + CutpointsOEHR = derive2 { name="CutpointsOEHR"; version="0.1.2"; sha256="0r772zb7g10akcfnf2hnyvpvba4px9pgslyns7drmijdsh0ncnvj"; depends=[survival]; }; + Cyclops = derive2 { name="Cyclops"; version="2.0.1"; sha256="10zx49qhbzgkc18vv4yk1x63ywamxijwir92ls6zbsrdifn412pv"; depends=[BH bit ff ffbase MASS Matrix Rcpp RcppEigen survival]; }; + CytobankAPI = derive2 { name="CytobankAPI"; version="1.2.0"; sha256="1dg7gfxhamcnzkcdi0kyqs5vkwvmfv1wj5syay5z9j52lh6gp4ib"; depends=[curl httr jsonlite]; }; CytobankAPIstats = derive2 { name="CytobankAPIstats"; version="2.0"; sha256="0xczcgaxd8dv6fd1j5c8y4il852lq8859d1y16sxs8a3gqn9fbz2"; depends=[CytobankAPI pheatmap shiny shinyFiles xlsx]; }; CytobankBridgeR = derive2 { name="CytobankBridgeR"; version="1.0.0"; sha256="0m8gxbm3p9gvdszymqx10n5rzb406r4f70a0in798c56mp2rcsl4"; depends=[CytobankAPI]; }; D2C = derive2 { name="D2C"; version="1.2.1"; sha256="0qhq27978id0plyz9mgdi0r1sr3ixnvqm8w6hp5c2wjd1yhhh12s"; depends=[corpcor foreach gRbase lazy MASS randomForest RBGL Rgraphviz]; }; @@ -748,7 +777,7 @@ in with self; { DACF = derive2 { name="DACF"; version="1.0.0"; sha256="0hv7c9lk6ivj4iz953yn11iy5p611q4si4ghn9d5a9i229s5hig8"; depends=[]; }; DAISIE = derive2 { name="DAISIE"; version="1.4"; sha256="16653wwz20lhf3bpzflpj5d1h7j3cqyfaqk5gn24aifga2jc0wbb"; depends=[DDD deSolve Matrix subplex tensor]; }; DAKS = derive2 { name="DAKS"; version="2.1-3"; sha256="0vmpwxvksnmyq40faimbgpj0y3zbk519986n38ipwdfzllcg0zs4"; depends=[relations sets]; }; - DALEX = derive2 { name="DALEX"; version="0.2.3"; sha256="0v2dmc4nnz28qjc378138j0lri2rlbrmwz97xsn9z557y4hrrmmh"; depends=[ALEPlot breakDown factorMerger ggplot2 ggpubr pdp]; }; + DALEX = derive2 { name="DALEX"; version="0.2.4"; sha256="0zrgp266bmn0b87bf0gvi4yc2ngj4pvhw9qbmvnhqlifrqb55ir6"; depends=[ALEPlot breakDown factorMerger ggplot2 ggpubr pdp]; }; DALY = derive2 { name="DALY"; version="1.5.0"; sha256="1v7ld01xcn5jiygl1c3xhd5h71ip90lks87fs9gmpnivp8jz5cr5"; depends=[]; }; DAMOCLES = derive2 { name="DAMOCLES"; version="1.1"; sha256="07z8mynhqnk1zcvm84w09xzkiy2dfxwhmnpi6gaddr3p0waql4gj"; depends=[ape caper deSolve expm geiger matrixStats picante]; }; DAMisc = derive2 { name="DAMisc"; version="1.4-3"; sha256="1hic53vi7mj4fvggxjl4d3j4zw8wwczh6pldyi8idrhm45hw2nh4"; depends=[boot car effects gdata lattice MASS nnet pscl QRM sm VGAM xtable]; }; @@ -760,8 +789,10 @@ in with self; { DBI = derive2 { name="DBI"; version="1.0.0"; sha256="1x8wy2vg2gcgd9bww04qmf0dsn3kp0rfjd8q8j1r2x9zxccg25pz"; depends=[]; }; DBItest = derive2 { name="DBItest"; version="1.5-2"; sha256="05wizjm2b97fsdha2i391h38xb0zrkhnd036qvdcm0r5l0y56sm8"; depends=[blob DBI desc hms R6 testthat withr]; }; DBKGrad = derive2 { name="DBKGrad"; version="1.6"; sha256="0207zx0v1x3zhfbs0h1ssxc1b683k111f90k8ybhknb147104knr"; depends=[lattice minpack_lm SDD TSA]; }; + DBfit = derive2 { name="DBfit"; version="1.0"; sha256="19jdf693ygwfchlqvh0kywid14v0b53p33rr2dvmaqmsc6pfxbbf"; depends=[Rfit]; }; DCA = derive2 { name="DCA"; version="2.0"; sha256="1acy33vyf814kr0aj6kdvi9f1qzgynwwzv57ll01gd0iqq36374f"; depends=[coin elasticnet GPArotation locfdr modeest mvtnorm PMA]; }; DCD = derive2 { name="DCD"; version="0.1.0"; sha256="0p6vk8fdvpcvb1bb5fwy3h1v8y3djlvcm5jl5lnx30ngqj6d7rcj"; depends=[data_table doParallel foreach ggplot2 igraph lattice lsa Matrix plyr qlcMatrix Rdpack ROCR WGCNA]; }; + DCEM = derive2 { name="DCEM"; version="0.0.1"; sha256="0mk9x17c0jhlgcvn1n98mw8cykims0q0qwd067zzbinwhja2d9sv"; depends=[MASS matrixcalc mvtnorm]; }; DCG = derive2 { name="DCG"; version="0.9.2"; sha256="1s2dz0vnhdhq23fqds1m2jspaz8k5zvd76z1zlbi6nb5ja5n3j3w"; depends=[]; }; DCGL = derive2 { name="DCGL"; version="2.1.2"; sha256="1dhkdvdglpsr0fzrfrrr6q76jhwxgrcjsiqn56s082y7v366xvs4"; depends=[igraph limma]; }; DCL = derive2 { name="DCL"; version="0.1.0"; sha256="1ls3x3v0wmddfy7ii7509cglb28l1ix1zaicdc6mhwin0rpp2rx3"; depends=[lattice latticeExtra]; }; @@ -783,26 +814,27 @@ in with self; { DEMOVA = derive2 { name="DEMOVA"; version="1.0"; sha256="09dqhhhihphhdnplmhdq4q5zwc0qvqhirdrxa9x6fr43vwa5zfp4"; depends=[leaps]; }; DES = derive2 { name="DES"; version="1.0.0"; sha256="16p38i8ykwc8gjw6c9dhdwjjpa1b17n9wqhz3rhkbzjh978pky31"; depends=[]; }; DESnowball = derive2 { name="DESnowball"; version="1.0"; sha256="012kdnxmzap6afc3ffkcvk1mazlkp286av6g9fwz2wcbf5mh9n1m"; depends=[clue cluster combinat MASS]; }; + DEVis = derive2 { name="DEVis"; version="1.0.0"; sha256="11g7ycvs8z1bnnyl5y6sypgm29pywpp652kg1nzib1x3dyl8cxvl"; depends=[DESeq2 ggdendro ggplot2 ggsci ggthemes gridExtra MASS pheatmap plyr PoiClaClu RColorBrewer reshape2 SummarizedExperiment]; }; DEoptim = derive2 { name="DEoptim"; version="2.2-4"; sha256="10nlsvms5pf0wmn4z1lj6vnmpwr10q8nhdy5xy9rn7hd1627fm0a"; depends=[]; }; DEoptimR = derive2 { name="DEoptimR"; version="1.0-8"; sha256="1vz546hyjyhly70z62h5n3mn62b8llhhmim8ffp9y6jnnb0i2sc4"; depends=[]; }; - DEploid = derive2 { name="DEploid"; version="0.5.0"; sha256="18v1fyxf6pbkanwmncd9jx9l7c9dk3y9dbc89a4cp3qshfn4vbhi"; depends=[htmlwidgets magrittr plotly Rcpp rmarkdown scales]; }; + DEploid = derive2 { name="DEploid"; version="0.5.2"; sha256="0xjczfql6jl4jxxwvdn3gmwj8bawhj5w6hdamrb0yjdjlhdwb11y"; depends=[htmlwidgets magrittr plotly Rcpp rmarkdown scales]; }; DFIT = derive2 { name="DFIT"; version="1.0-3"; sha256="1h0wvcplb7j7dqz9hkaw30x92ngxzkdvkwpg0142hrqb201zfrac"; depends=[ggplot2 mvtnorm simex]; }; DGCA = derive2 { name="DGCA"; version="1.0.1"; sha256="1lqqzrsidkli4bk4jikq5f75jzqyzhv94n882yic5ndxgv26p9ic"; depends=[matrixStats WGCNA]; }; DGM = derive2 { name="DGM"; version="1.7.2"; sha256="0z0f8bazzsahvjkpfif50db700mqb7arcglwsfxcar9qdy082vsn"; depends=[data_table ggplot2 Rcpp RcppArmadillo reshape2]; }; DGVM3D = derive2 { name="DGVM3D"; version="1.0.0"; sha256="17cxv8rm7kmxms7v7hzbwbdwa3xl1hwgiljf97ppwswglqyik9iv"; depends=[rgl]; }; DHARMa = derive2 { name="DHARMa"; version="0.2.0"; sha256="0jh01z2ygz8hi0vh2fxw52ck0wia4hp44qc7v0bks8776gbwj8il"; depends=[ape doParallel foreach gap glmmTMB lme4 lmtest MASS mgcv qrnn sfsmisc]; }; - DHS_rates = derive2 { name="DHS.rates"; version="0.3.1"; sha256="1lwmd58q2pqynh2dj3alcrri8zwxayq92nn7hwzwlqw70xr5anqv"; depends=[haven matrixStats reshape survey]; }; + DHS_rates = derive2 { name="DHS.rates"; version="0.4.0"; sha256="12q5qn9k9svabqsya039axx1lnafcq4mlnnb0nyfdjhklnh7k870"; depends=[haven matrixStats reshape survey]; }; DIFboost = derive2 { name="DIFboost"; version="0.2"; sha256="0wyjk870n18lq0dwhm9ndsh5vv0d8wkrbcky68w454vzrrw1q9h8"; depends=[mboost penalized stabs]; }; DIFlasso = derive2 { name="DIFlasso"; version="1.0-3"; sha256="195wiy0jjkq6bh2b6wrjmr5l34pzx0i2qqvwp4pzv77sx737ds0v"; depends=[grplasso miscTools penalized]; }; DIFtree = derive2 { name="DIFtree"; version="2.1.4"; sha256="16cyd634jflaszpfq0ymwlbv57ci1iyffwai641jczn8cny504zl"; depends=[penalized plotrix]; }; DIME = derive2 { name="DIME"; version="1.2"; sha256="11l6mk6i3kqphrnq4iwk4b0ridbbpg2pr4pyqaqbsb06ng899xw0"; depends=[]; }; DIRECT = derive2 { name="DIRECT"; version="1.0.1"; sha256="00z4xlc9kxn19lw2b8xq6krsf5v3wfbr1ghl5ah5shr9dnv84lc1"; depends=[]; }; DISTRIB = derive2 { name="DISTRIB"; version="1.0"; sha256="0whwmmdx2k2vrjjkz4ww9v7z9ad3835819pby91119lyic27w727"; depends=[]; }; + DIconvex = derive2 { name="DIconvex"; version="1.0.0"; sha256="0bnrq9nmryshir6ll43nz20aaqmmw0zjvfml72cpwbvrma8a3qmz"; depends=[lpSolveAPI]; }; DJL = derive2 { name="DJL"; version="2.7"; sha256="1p0jd2hn6an3kkc85xkkj36x7iwi43k1yrnmzy0mb5qrbvx07hlj"; depends=[car lpSolveAPI]; }; DLASSO = derive2 { name="DLASSO"; version="2.0.2"; sha256="0xdygf6h89d9z4kqb46iqfxgdzq9dmkrxf9ypw78l4d8n9xx2gaa"; depends=[MASS]; }; - DLMtool = derive2 { name="DLMtool"; version="5.1.3"; sha256="0n7sx577fffxbxfbwy19py2hm00rb403n4fvn9j6pcdi433mfx59"; depends=[abind coda devtools ggplot2 ggrepel gridExtra knitr MASS mvtnorm openxlsx r4ss Rcpp RcppArmadillo readxl rmarkdown snowfall]; }; - DMMF = derive2 { name="DMMF"; version="0.4.0.1"; sha256="0fypj0a0kjzfghazs55mxkig9n3ngjmbi3xmdxkpa35jbn71bfdd"; depends=[raster rgdal sp]; }; - DMR = derive2 { name="DMR"; version="2.0"; sha256="1kal3bvhwqs00b6p6kl0ja35pcz9v9y569148qfhy94m319fcpzm"; depends=[magic]; }; + DLMtool = derive2 { name="DLMtool"; version="5.2.3"; sha256="1rkxpfk3pa566crl01z0nmkl44n1gxdp6idfhrc6p1jwccx9fgdv"; depends=[abind boot broom devtools dplyr fmsb ggplot2 ggrepel gridExtra kableExtra knitr MASS mvtnorm openxlsx purrr Rcpp RcppArmadillo readxl rfishbase rmarkdown shiny snowfall tidyr]; }; + DMMF = derive2 { name="DMMF"; version="0.5.0.2"; sha256="02sk1ykispkjdclsi5xp1m4vmf8mhcqm4q2z73xanvax1kqfb3v3"; depends=[raster rgdal sp]; }; DMRMark = derive2 { name="DMRMark"; version="1.1.1"; sha256="15wr6j0v9kvbv8y6flkp4svfqy059ziv89nxv91vp0pjmavhpdlz"; depends=[ellipse MCMCpack mvtnorm]; }; DMRnet = derive2 { name="DMRnet"; version="0.2.0"; sha256="1rbba8w4li240gw5z675d7skm72rh0zxzp4rhsn6ivj72jya7jw4"; depends=[glmnet grpreg]; }; DMwR = derive2 { name="DMwR"; version="0.4.1"; sha256="1qrykl9zdvgm4c801iix5rxmhk9vbwnrq9cnc58ms5jf34hnmbcf"; depends=[abind class lattice quantmod ROCR rpart xts zoo]; }; @@ -814,6 +846,7 @@ in with self; { DNetFinder = derive2 { name="DNetFinder"; version="1.0"; sha256="0q56c2389qaq3wsqpj8s95ncm0xmbl1slr0jmpixb48hhgk0l0ji"; depends=[flare]; }; DOBAD = derive2 { name="DOBAD"; version="1.0.6"; sha256="0ifrrfm4yp1416z58qgnak042rgj1xvqby2vvzgrv19z6b3250p3"; depends=[lattice Matrix numDeriv]; }; DODR = derive2 { name="DODR"; version="0.99.2"; sha256="16ia9j8vab8n2i6a17wz8nfvkfgj2gsyhxvwgxvjg2cz99hsbhdj"; depends=[Matrix npsm Rfit]; }; + DOS = derive2 { name="DOS"; version="1.0.0"; sha256="0vvkwn4wfvspbk74nb6124hdx9158h6yfksib14xqq7rx7c97ad4"; depends=[MASS]; }; DOT = derive2 { name="DOT"; version="0.1"; sha256="0qh5n57cp9c2n5yn59q4wggz82943pwfanp3kx869aba2x3sj30i"; depends=[V8]; }; DOvalidation = derive2 { name="DOvalidation"; version="1.1.0"; sha256="1mzws3w7djpxnfqxjcqwgia7p17kb0qlnzj6qcfg2m1vamb1cn2z"; depends=[]; }; DPBBM = derive2 { name="DPBBM"; version="0.2.5"; sha256="1qypxrcm3sb727lqb09ssjf3hblixqayw3qsyql01imrxwm609i2"; depends=[CEoptim gplots tmvtnorm VGAM]; }; @@ -822,10 +855,11 @@ in with self; { DPpackage = derive2 { name="DPpackage"; version="1.1-7.4"; sha256="0lfw55kbjwr1dqkd98p6488p6c0nh5pkfkc9wpds8wsqm38siad6"; depends=[MASS nlme survival]; }; DPtree = derive2 { name="DPtree"; version="1.0.1"; sha256="0d7zf695lwkx4gv50f08cbi3p3mjjay0qgrbmvybf9m15i4zmyd7"; depends=[MASS MCMCpack plyr Rdpack]; }; DREGAR = derive2 { name="DREGAR"; version="0.1.3.0"; sha256="15cplshs85r0z659mc7xmj5db7vc95wxs01c34isc22p8z0a287i"; depends=[msgps]; }; - DRIP = derive2 { name="DRIP"; version="1.3"; sha256="08v6sajgaqa0zvkr9hfzjxsj78acrkj6l9hjxkirbspg3fwqphk7"; depends=[caTools readbitmap]; }; + DRIP = derive2 { name="DRIP"; version="1.4"; sha256="1rds1161h19waqhiq08hqk5zcn48afccaggmb42xr1zyk31irpi6"; depends=[readbitmap]; }; DRR = derive2 { name="DRR"; version="0.0.3"; sha256="1yd1fvllfkcrwg9v322n4wkk4q4q84nvy58y4vac9pdr3yf3i4vl"; depends=[CVST kernlab Matrix]; }; DRaWR = derive2 { name="DRaWR"; version="1.0.1"; sha256="1pfdczwzd236c64yw94bgbk0hbl4dhlgjfjwkljmqgqrzsddvgqh"; depends=[Matrix ROCR]; }; - DSAIDE = derive2 { name="DSAIDE"; version="0.6.0"; sha256="0jg5shgq1f9k0fcpzkpynd87xfcj8ky09xsz8n8yfvy4fw8d77kl"; depends=[adaptivetau deSolve knitr shiny]; }; + DSAIDE = derive2 { name="DSAIDE"; version="0.7.0"; sha256="0n99d9ry5svp3fpvkzv3z6mfwlnzd7grf4yrsmn6cpw9m2cmy5yz"; depends=[adaptivetau deSolve dplyr ggplot2 gridExtra knitr rmarkdown shiny tidyr XML]; }; + DSAIRM = derive2 { name="DSAIRM"; version="0.4.0"; sha256="1jr4nxhb5b5a7snpi6j1kzd1lfvjm88s9zgx20m2sz37jw1lrsmd"; depends=[adaptivetau boot deSolve dplyr ggplot2 gridExtra knitr lhs nloptr rmarkdown shiny tidyr XML]; }; DSBayes = derive2 { name="DSBayes"; version="1.1"; sha256="0iv4l11dww45qg8x6xcf82f9rcz8bcb9w1mj7c7ha9glv5sfb25v"; depends=[BB]; }; DSL = derive2 { name="DSL"; version="0.1-6"; sha256="0fmqxladifqqcs4mpb8a1az74fyb4gb8l2y5gzqaad3dbiz82qih"; depends=[]; }; DSpat = derive2 { name="DSpat"; version="0.1.6"; sha256="1v6dahrp8q7fx0yrwgh6lk3ll2l8lzy146r28vkhz08ab8hiw431"; depends=[mgcv RandomFields rgeos sp spatstat]; }; @@ -841,7 +875,8 @@ in with self; { DTR = derive2 { name="DTR"; version="1.7"; sha256="1lzvk9ar6xf3n2vvy8vb9mvrbx3nafzzhvz5g7vf79jd71yz54jd"; depends=[aod ggplot2 survival]; }; DTRlearn = derive2 { name="DTRlearn"; version="1.3"; sha256="0ngzvjlzn20pff1ihw87nar7riiva4pnfih7hlsr0iszd3v3b1gq"; depends=[ggplot2 glmnet kernlab MASS]; }; DTRreg = derive2 { name="DTRreg"; version="1.3"; sha256="1144kcqblyrpdqyj9as6y47iq3x99bf76hdw6j43cmgcs11gapc3"; depends=[]; }; - DTWBI = derive2 { name="DTWBI"; version="1.0"; sha256="001lkjk8dh6mdcysc8mw9c37xp543hjfci0k0py44z7c90b9p2la"; depends=[dtw e1071 entropy lsa rlist]; }; + DTWBI = derive2 { name="DTWBI"; version="1.1"; sha256="06lp4yc5nhacrgic78l014g2w1ibwgs8dp8zrahk5aripaczl25y"; depends=[dtw e1071 entropy lsa rlist]; }; + DTWUMI = derive2 { name="DTWUMI"; version="1.0"; sha256="0pybgbfs2yp2ljbs0kra5z70x3llkiwdngp6cadgs3j9rar4vq4q"; depends=[dtw DTWBI e1071 entropy lsa rlist]; }; DVHmetrics = derive2 { name="DVHmetrics"; version="0.3.7"; sha256="1syxw49pzh36nfq0zfr83cwpac86fnj0b7nlqiin4jb00h8vrf6i"; depends=[ggplot2 KernSmooth markdown reshape2 shiny]; }; DWDLargeR = derive2 { name="DWDLargeR"; version="0.1-0"; sha256="1bxdvgj38xv2xj98njpyhy12b54nccwnc3v92kkpd3i7nwbw48dy"; depends=[Matrix SparseM]; }; DWLasso = derive2 { name="DWLasso"; version="1.1"; sha256="1i8j8wjfvg69ldr8ahz1zv3m2wgxd701iph94ad22zs9qwqfg16z"; depends=[glmnet hglasso Matrix]; }; @@ -858,14 +893,18 @@ in with self; { DataClean = derive2 { name="DataClean"; version="1.0"; sha256="0wkafjyp6c2mx7g1bpz2pbxyl5nm2wba2hly8miizv0fdc762za5"; depends=[xlsx XML]; }; DataCombine = derive2 { name="DataCombine"; version="0.2.21"; sha256="0iwb4726bk0cjhay694dp43b1553yyk9lpxbncs85kz229b26arm"; depends=[data_table dplyr]; }; DataEntry = derive2 { name="DataEntry"; version="0.9-3"; sha256="0gfsg7wfwy88x7y1dwpgwi6fkizjnhrzj0a5ij70y4a4sjmyiy55"; depends=[digest gWidgets2 gWidgets2RGtk2 RGtk2]; }; - DataExplorer = derive2 { name="DataExplorer"; version="0.6.0"; sha256="1vwihlslrcwca3q15hxpa9kvajv0clz7scqycaxhxk9ngdwcqh10"; depends=[data_table ggplot2 gridExtra networkD3 reshape2 rmarkdown scales]; }; + DataExplorer = derive2 { name="DataExplorer"; version="0.7.0"; sha256="0mhynbsiamcxd208pr75n23ccd5sajlry2c3rl0yxyv7wn6axkyj"; depends=[data_table ggplot2 gridExtra networkD3 reshape2 rmarkdown scales]; }; DataGraph = derive2 { name="DataGraph"; version="1.0.1"; sha256="0rvysvkcs926jzhp7iz9d5np0pa31y825ajn9yyzhbdfk5dg2wry"; depends=[Rcpp]; }; DataLoader = derive2 { name="DataLoader"; version="1.3"; sha256="18mih6mb95v5xjvmqwby2mma74fcxwyqdm5w8j3bhi4iwgfn6d7v"; depends=[plyr rChoiceDialogs readxl xlsx]; }; - DataVisualizations = derive2 { name="DataVisualizations"; version="1.1.1"; sha256="1y38q1rw92qzsl22663v730i9c1mlyyw9pb167f8f81snb0x9fda"; depends=[AdaptGauss ggplot2 magrittr Rcpp RcppArmadillo sp]; }; - DatabaseConnector = derive2 { name="DatabaseConnector"; version="2.1.3"; sha256="00dd9m7qf97ymrjjklg4a0j93wcn6mrmvg7spywm524nickcd4f6"; depends=[bit DatabaseConnectorJars DBI ff ffbase rJava SqlRender urltools]; }; + DataPackageR = derive2 { name="DataPackageR"; version="0.15.4"; sha256="1q9n0684hi1y87zq25274s2kgdk7slsb2nchww36yy45vlzi3jsn"; depends=[assertthat crayon desc devtools digest futile_logger knitr purrr rmarkdown roxygen2 rprojroot stringr usethis yaml]; }; + DataVisualizations = derive2 { name="DataVisualizations"; version="1.1.4"; sha256="0q6pz9j6js5q8mma6d1vl4wngk5zzmfq0hssrh2pk2brnm6958mj"; depends=[AdaptGauss ggplot2 Rcpp RcppArmadillo sp]; }; + DatabaseConnector = derive2 { name="DatabaseConnector"; version="2.2.0"; sha256="0y6si8sci70fskkznx7xg5wk488hcpdfm4193b9i5nbsq6mnn8a6"; depends=[bit DatabaseConnectorJars DBI ff ffbase rJava SqlRender urltools]; }; DatabaseConnectorJars = derive2 { name="DatabaseConnectorJars"; version="1.0.0"; sha256="1m739q9x5w2xcwx19qm633z6xfijqdgcdvfjj6c5jhn66hc401nq"; depends=[rJava]; }; DatabionicSwarm = derive2 { name="DatabionicSwarm"; version="1.1.0"; sha256="19in7n2fs5m965wf37mplsafiqrmgv1lcyhf7rlk4wvq4y2gvic6"; depends=[deldir GeneralizedUmatrix Rcpp RcppArmadillo]; }; Davies = derive2 { name="Davies"; version="1.1-9"; sha256="19n2szki2dc8z01zh5a7bq4scgisnpd2qqbiimgrswjrykgh2fpm"; depends=[]; }; + DeLorean = derive2 { name="DeLorean"; version="1.5.0"; sha256="1ry6j4mvxms9hddi9c56p9yhjh66fzss41wqkf6xq398h1wbn4q1"; depends=[BH broom coda dplyr fastICA functional ggplot2 kernlab lattice MASS memoise Rcpp RcppEigen reshape2 rstan rstantools seriation StanHeaders stringr]; }; + DecisionAnalysis = derive2 { name="DecisionAnalysis"; version="0.1.0"; sha256="1pxsvwl1in822ml7spb4flln2l7kzavq0jhxxsgxcrljypvrva61"; depends=[Cairo data_tree dplyr ggplot2 gridExtra tidyr viridisLite]; }; + DeclareDesign = derive2 { name="DeclareDesign"; version="0.10.0"; sha256="1vp9sp7sqpzdglaqiniz39wgz3ib2h45kqrxkfgdrnsiz14ksmjw"; depends=[estimatr fabricatr randomizr rlang]; }; DecorateR = derive2 { name="DecorateR"; version="0.1.1"; sha256="1dvyadlksqv8ns043yh91f6kw162k6r0zwn13j1g6pvismw04br9"; depends=[rJava RWeka RWekajars]; }; Deducer = derive2 { name="Deducer"; version="0.7-9"; sha256="14kakyf28i654pndlswjzp6h3h7szpznrg6xznqg150mmn0bs3s6"; depends=[car e1071 effects foreign ggplot2 JGR MASS multcomp plyr rJava scales]; }; DeducerExtras = derive2 { name="DeducerExtras"; version="1.7"; sha256="0sngsq31469a74y7nhskl82fwy2i0ga68m9g6b1xyhxz1a8kgvlg"; depends=[Deducer irr rJava]; }; @@ -876,31 +915,33 @@ in with self; { DeducerText = derive2 { name="DeducerText"; version="0.1-2"; sha256="0if2p9j74wa5rva4iv0i8iax22grl9j7lqcqzqlywjgqwnlzxa05"; depends=[Deducer RColorBrewer SnowballC tm wordcloud]; }; Delaporte = derive2 { name="Delaporte"; version="6.2.0"; sha256="0lhi4gfps00c9psr8kk7zzh7ky4y7xi2va303darxq9j6v509qck"; depends=[]; }; DelayedEffect_Design = derive2 { name="DelayedEffect.Design"; version="0.0.4"; sha256="0n1dw9bqisfarg7him49mzqn60gcfr660d5x9k6b37r12dnmy48v"; depends=[msm survival]; }; - Delta = derive2 { name="Delta"; version="0.1.1.11"; sha256="1fi5sgyrf86xmfxhglqxcc0hq5mpc8ar3nk2s4wx3rw4if3sdxdz"; depends=[]; }; + Delta = derive2 { name="Delta"; version="0.2.0.2"; sha256="00yl7rildggcv5zlis6idzjkfvz6x99c29vrra1w8l11klxnjpdy"; depends=[]; }; Demerelate = derive2 { name="Demerelate"; version="0.9-3"; sha256="1bsf09di6nh0hznqx829jnbn3092rya03hnc82cns6rm8d3bn0a9"; depends=[fts mlogit sfsmisc vegan]; }; + DemoDecomp = derive2 { name="DemoDecomp"; version="1.0.1"; sha256="0m24ld8s3ph8qcbkqma5y5k5nv0d0vgb7wz8q20gxnfbj2kbcvjv"; depends=[Rdpack]; }; DendSer = derive2 { name="DendSer"; version="1.0.1"; sha256="0id6pqx54zjg5bcc7qbxiigx3wyic771xn9n0hbm7yhybz6p3gz9"; depends=[gclus seriation]; }; - DendroSync = derive2 { name="DendroSync"; version="0.1.1"; sha256="0lizdkd5izqn3n4iqcj6gyc2p2c3ajljfhv5js4wfl2fljs46wkg"; depends=[ggplot2 gridExtra nlme]; }; + DendroSync = derive2 { name="DendroSync"; version="0.1.2"; sha256="007lmdwnk6qll13965667fn2a0lfnc85msp0wrgm25gi011z8x37"; depends=[ggplot2 gridExtra nlme]; }; DengueRT = derive2 { name="DengueRT"; version="1.0.1"; sha256="11qfg4l6y3j8qh4dcsz13xjjj1n0q71c9a3c180nm5lgqv0nwb81"; depends=[drc ggplot2 nlme]; }; - DensParcorr = derive2 { name="DensParcorr"; version="1.0"; sha256="15w0ifcq1js0wyjscfhlbga77sgzqpmz7zmwa77y92iwna8q66ad"; depends=[clime gplots]; }; + DensParcorr = derive2 { name="DensParcorr"; version="1.1"; sha256="1ifkg7cpimf27yhr60rks77r16kmhwa5h10wv7b64sbfncnyzfmj"; depends=[clime gplots]; }; Density_T_HoldOut = derive2 { name="Density.T.HoldOut"; version="2.00"; sha256="0kh5nns1kqyiqqfsgvxhx774i2mf4gcim8fp5jjyq577x4679r31"; depends=[histogram]; }; - DepthProc = derive2 { name="DepthProc"; version="2.0.3"; sha256="0zzbk0vbl2qfwr5j203xpzahf6kl0ya4l7xfjdc6diadfnr0w94y"; depends=[colorspace geometry ggplot2 lattice MASS np Rcpp RcppArmadillo rrcov sm zoo]; }; + DepthProc = derive2 { name="DepthProc"; version="2.0.4"; sha256="1dh159pvvn2hbjydb9ys8ndblpzpyg72g2hfiqrdi3bkz865xvg5"; depends=[colorspace geometry ggplot2 lattice MASS np Rcpp RcppArmadillo rrcov sm zoo]; }; Deriv = derive2 { name="Deriv"; version="3.8.5"; sha256="0815ws2zmla3ici1n8amkc8fz8lwpbg5z68m8j3nhc79m2ikvm20"; depends=[]; }; - DescTools = derive2 { name="DescTools"; version="0.99.24"; sha256="1ns0vqpnfj995dq1l6pmah2wi6l8zacndha6brhy97hyn84mc83k"; depends=[BH boot expm foreign manipulate MASS mvtnorm Rcpp]; }; + DescTools = derive2 { name="DescTools"; version="0.99.25"; sha256="0bk2za3zx9xfxaiz7ax2n9592v4nvb7lwxw68g4vxvxlyrmi178c"; depends=[BH boot expm foreign manipulate MASS mvtnorm Rcpp]; }; DescToolsAddIns = derive2 { name="DescToolsAddIns"; version="1.0"; sha256="1qyxbnmr2dycyfivdyvdqcbpk993q9glrixgp64pflx3sqz91yyk"; depends=[DescTools rstudioapi]; }; - DescribeDisplay = derive2 { name="DescribeDisplay"; version="0.2.5"; sha256="02b6yjgklsdjh3rikc8f5wfx08ymbygr3fyq1c134xhffhykrlgp"; depends=[GGally ggplot2 plyr reshape2 scales]; }; + DescribeDisplay = derive2 { name="DescribeDisplay"; version="0.2.7"; sha256="0241mbz0y3ala7fsb4fwjd0xigsk0wq77hfrjyvnnp97rfjfzmcv"; depends=[GGally ggplot2 plyr reshape2 scales]; }; DescriptiveStats_OBeu = derive2 { name="DescriptiveStats.OBeu"; version="1.3.0"; sha256="1cgxnsxivsqchzqywv470q9qwxczmcvwhrr51m70mcbzmib4mxw3"; depends=[curl dplyr jsonlite magrittr RCurl reshape]; }; + DesignLibrary = derive2 { name="DesignLibrary"; version="0.1.1"; sha256="1ykzriq1h2i0fmbdsbscy093j4bbsxdvbx94yqcrxz9zflzzmk36"; depends=[DeclareDesign estimatr fabricatr randomizr rlang]; }; DetMCD = derive2 { name="DetMCD"; version="0.0.5"; sha256="034wb5hwpikli6h2rwiqr19qvzxrr4qwi4q436y7c5a5wgkfzgl5"; depends=[pcaPP Rcpp RcppEigen robustbase]; }; DetR = derive2 { name="DetR"; version="0.0.5"; sha256="1dd4nzkgj5pl9397aa0z3q5fpl27xbdf7q0pqbs821dyynylxzn9"; depends=[MASS pcaPP Rcpp RcppEigen robustbase]; }; DetSel = derive2 { name="DetSel"; version="1.0.2"; sha256="0igkccclmjwzk7sl414zlhiykym0qwaz5p76wf4i7yrpjgk7mhl9"; depends=[ash]; }; Devore7 = derive2 { name="Devore7"; version="0.7.6"; sha256="1m18p8h9vv4v0aq2fkjyj39vzb8a09azbbczhfiv4y88w540i8nw"; depends=[lattice MASS]; }; Dforest = derive2 { name="Dforest"; version="0.4.2"; sha256="19jyph2zqfyq9vv22kb6fqy89l0vcviv19zgk10hbd7q850f6ryn"; depends=[ggplot2 rpart]; }; - DiPhiSeq = derive2 { name="DiPhiSeq"; version="0.1.0"; sha256="02kk0qqi9skb2pszfsgasa9fj7iz1brwxgwcw1dq9gf5hxr9zra4"; depends=[]; }; + DiPhiSeq = derive2 { name="DiPhiSeq"; version="0.2.0"; sha256="11l2inf99vxz9k292307j8c2b25kc1066svy3vxrfl72rrm4fqa7"; depends=[]; }; DiagrammeR = derive2 { name="DiagrammeR"; version="1.0.0"; sha256="0zik8j50yfxgzdv2cf6q80kw8nb5y55l9sbrp60qc08r3fp6s61b"; depends=[downloader dplyr glue htmltools htmlwidgets igraph influenceR magrittr purrr RColorBrewer readr rgexf rlang rstudioapi scales stringr tibble tidyr viridis visNetwork]; }; DiagrammeRsvg = derive2 { name="DiagrammeRsvg"; version="0.1"; sha256="0j2cm1mx3zrb2k3pcrb96z2z3kws61gyyjsjjv5rqcb5lzdgi65k"; depends=[V8]; }; DiallelAnalysisR = derive2 { name="DiallelAnalysisR"; version="0.1.1"; sha256="1diwzckn0f2dv0vj2mdzy7k3md6j472xzj82ip23adwr27vlfsi3"; depends=[ggplot2]; }; DiceDesign = derive2 { name="DiceDesign"; version="1.7"; sha256="05bmscy275077kmbmg75npnmw30kd5x5wmlizcfq771zixby3f7h"; depends=[]; }; DiceEval = derive2 { name="DiceEval"; version="1.4"; sha256="06p3v161ig714k7z59iji64xhxw1a68kqhnlwhwpjpyrx7kn137b"; depends=[DiceKriging]; }; - DiceKriging = derive2 { name="DiceKriging"; version="1.5.5"; sha256="035kbk633v4kfb44wiyb556sayl73c24fc1w09r3f33shqgidzjm"; depends=[]; }; + DiceKriging = derive2 { name="DiceKriging"; version="1.5.6"; sha256="14jfwvj8vhrngcpkqdzr6klhnqwgr1g5wm5rqz8q6w7ip4nnsii5"; depends=[]; }; DiceOptim = derive2 { name="DiceOptim"; version="2.0"; sha256="1hx4379yb6d36c494qc237vld4jnfxq18m994p5ii9ks6s7amifn"; depends=[DiceDesign DiceKriging mnormt pbivnorm randtoolbox rgenoud]; }; DiceView = derive2 { name="DiceView"; version="1.3-2"; sha256="0ny9gbaycrq3lr4gqil1yyhkkyxmabl8w6cmkkzlx3yaara0idkf"; depends=[DiceEval DiceKriging rgl]; }; DidacticBoost = derive2 { name="DidacticBoost"; version="0.1.1"; sha256="0z1h61n6nfjvb64fgkzi1sq7ag747crhh593hxkx0cpza29778rz"; depends=[rpart]; }; @@ -914,10 +955,11 @@ in with self; { DirectEffects = derive2 { name="DirectEffects"; version="0.1"; sha256="0c9inxn624c5rxa86d8r8jhsrm42rcsm4xxrwg7h3lvpairiyil2"; depends=[Formula]; }; DirectStandardisation = derive2 { name="DirectStandardisation"; version="1.2"; sha256="060nscnn7wamnbb45a55wr6rirlbpwwjz0kxiw3aiqkm16ilzfbs"; depends=[]; }; DirectedClustering = derive2 { name="DirectedClustering"; version="0.1.1"; sha256="1shdqz0c5bbgknvfqr3ais26cb5mpywnah3d3584w97sy8v7gxm2"; depends=[igraph]; }; - Directional = derive2 { name="Directional"; version="3.2"; sha256="0wjlkaq6wwpfllyk9qjmpap3vy0yxgbd12yz4nmmf51fnpqv75a6"; depends=[doParallel foreach MASS RcppZiggurat Rfast]; }; + Directional = derive2 { name="Directional"; version="3.3"; sha256="17cf2nrx9kxyrmsg443bnh2dfw0351ab4g0xl5bm7ldbiffqm7sp"; depends=[doParallel foreach MASS RcppZiggurat Rfast]; }; DirichletReg = derive2 { name="DirichletReg"; version="0.6-3"; sha256="0qvnsbyn3livp5jrnxskf5sf7f2svy5mqkmnhzncb9bwf3kxpyla"; depends=[Formula maxLik rgl]; }; DisHet = derive2 { name="DisHet"; version="1.0.0"; sha256="056jcs1qpiyadnmlzd0cj4kp0qzkichxi0pdnxypyq1fsqnpvan3"; depends=[gtools matrixStats]; }; - DisImpact = derive2 { name="DisImpact"; version="0.0.2"; sha256="0rn92vdxll4r20q0ybqrd3sdpa1bsg9zmbb98zmllfvmh2fgj6a1"; depends=[dplyr magrittr rlang]; }; + DisImpact = derive2 { name="DisImpact"; version="0.0.3"; sha256="1xmbwhbhb2jyzar8am77zma7l5siyhzna6l69y2068lqrk7l5w32"; depends=[dplyr magrittr rlang]; }; + DiscreteFDR = derive2 { name="DiscreteFDR"; version="1.1"; sha256="0flirs7m2a8igkf0qvr99i882k886iry8wjzsb2l4zp0f1piwjyy"; depends=[]; }; DiscreteInverseWeibull = derive2 { name="DiscreteInverseWeibull"; version="1.0.2"; sha256="0vjsvl4m4zccfgizv7mzidbbpzqcm101x448vllcdcrn2xlnkmnq"; depends=[Rsolnp]; }; DiscreteLaplace = derive2 { name="DiscreteLaplace"; version="1.1.1"; sha256="17w4vjvsm7jacvwckjczyah3hglq044r3m6vqdcrg8haz884rav2"; depends=[]; }; DiscreteWeibull = derive2 { name="DiscreteWeibull"; version="1.1"; sha256="1rg3ax6jryagf5d3h8m44x9wyhr2qff3srfa9zrk6i64p1ahk9lr"; depends=[Rsolnp]; }; @@ -930,7 +972,7 @@ in with self; { DiversityOccupancy = derive2 { name="DiversityOccupancy"; version="1.0.6"; sha256="16x3fpchgd12mccvr1k11vjka97sy5vjvjcyd5y3pskgnpycc2sv"; depends=[dplyr ggplot2 glmulti MuMIn qpcR raster unmarked vegan]; }; DnE = derive2 { name="DnE"; version="2.1.0"; sha256="02cbfb3m9xf24wkgqc06k3k0rx7qlqh4ma43khg6fpvif6yyahrn"; depends=[]; }; DoE_MIParray = derive2 { name="DoE.MIParray"; version="0.11"; sha256="0plwvji2rrxmjnf61mj1ijglc9z62n26ijqsf65s35c19qv2g0y1"; depends=[DoE_base]; }; - DoE_base = derive2 { name="DoE.base"; version="1.0"; sha256="01h2slkrc4vzmz54vilv6qkgfz0f9jhq3bb684rl7cx55smhzr68"; depends=[combinat conf_design lattice MASS numbers vcd]; }; + DoE_base = derive2 { name="DoE.base"; version="1.1-1"; sha256="1py9ml1gdibjqklqw2gzrppkgcpp2418sxdbg7ciw9vkwivwbrsn"; depends=[combinat conf_design lattice MASS numbers partitions vcd]; }; DoE_wrapper = derive2 { name="DoE.wrapper"; version="0.9"; sha256="0l4dxb0f4ql5k3x1avfzs1w54qwjxfp8rl9h9vg6p1zhbkz4qz06"; depends=[AlgDesign DiceDesign DoE_base FrF2 lhs rsm]; }; DoEstRare = derive2 { name="DoEstRare"; version="0.2"; sha256="0y9ymw7114jk1rwiasq400bpgvkxv6rpc954c7v9mgxd3c2nfza7"; depends=[]; }; DoTC = derive2 { name="DoTC"; version="0.2"; sha256="1hjjkmxrbiysy3xl6n4q7kxcygdq68jcsgki1p937zj9a17sa62j"; depends=[ggplot2 plyr]; }; @@ -947,7 +989,7 @@ in with self; { DrillR = derive2 { name="DrillR"; version="0.1"; sha256="0n7pim5kk0wfdjcc67v4vvdb7wyhn5bcgi2a12nbyfyydss7pk1g"; depends=[httr]; }; DrugClust = derive2 { name="DrugClust"; version="0.2"; sha256="0acvjqwzkbjmy101m501l7fkfxzkp6zflwvn56li5307xv9ggnfg"; depends=[cclust cluster e1071 MESS ROCR]; }; DstarM = derive2 { name="DstarM"; version="0.3.0"; sha256="16vcv21dgnymhsy9j5x5pblnipf4hdyscajx6pr8kl6i95hs3hmj"; depends=[DEoptim ggplot2 Rcpp RcppArmadillo rtdists RWiener]; }; - DtD = derive2 { name="DtD"; version="0.1.0"; sha256="1alkgd2rpjrg1sl1l22qsr5b5d3i4scvfxijhffxb0897yvg71ri"; depends=[checkmate Rcpp RcppArmadillo]; }; + DtD = derive2 { name="DtD"; version="0.2.0"; sha256="0s6prl8rmpjmsv94ww3pvks11nw716gf7250jyynharvqd9q9aps"; depends=[checkmate Rcpp RcppArmadillo]; }; DunnettTests = derive2 { name="DunnettTests"; version="2.0"; sha256="1sf0bdxays10n8jh2qy85fv7p593x58d4pas9dwlvvah0bddhggg"; depends=[mvtnorm]; }; DySeq = derive2 { name="DySeq"; version="0.22"; sha256="1sx6mg0bcqb5ff6x305k43zx3fwd16rvxc7xb3ai5h3w7fs9zz7y"; depends=[boot MASS TraMineR]; }; Dykstra = derive2 { name="Dykstra"; version="1.0-0"; sha256="1rc1409ky0ysqr3ccq28yhbs94m6d0z2dfa66k4c7irxjvbagwz6"; depends=[]; }; @@ -955,7 +997,7 @@ in with self; { DynNom = derive2 { name="DynNom"; version="4.1.1"; sha256="1c4hykp8fwr6h5y09m4qs23bmbaj6im2c833mv2ymlhy5bwhmnfi"; depends=[BBmisc compare ggplot2 plotly rms shiny stargazer survival]; }; DynTxRegime = derive2 { name="DynTxRegime"; version="3.2"; sha256="0a6s28vc7kf6r7qmy9xjmxm39fl0ijnbl01d8rzr4w9sbnr3n85l"; depends=[dfoptim kernlab modelObj rgenoud]; }; DynamicDistribution = derive2 { name="DynamicDistribution"; version="1.1"; sha256="1s78hpj2pxjs4vixin1i816qjbn3wk7b8rd2zdjp4d4rbxifcqf5"; depends=[]; }; - DynamicGP = derive2 { name="DynamicGP"; version="1.0-2"; sha256="1mgipnkf8mlxcr9b6naiy5nq90war1gdp2cm54681b4cx0fv62p2"; depends=[laGP lhs]; }; + DynamicGP = derive2 { name="DynamicGP"; version="1.1-1"; sha256="14xmsxvzl4jri6727qj7mzs1smlqm1hgq03v5r624dqkkmfbdxkv"; depends=[lhs]; }; EAinference = derive2 { name="EAinference"; version="0.2.3"; sha256="1kzcfya3z6rf1vqjn72yjymdhrn4dzgmwifh3w6k22cy5jxffzn4"; depends=[hdi limSolve MASS msm mvtnorm Rcpp RcppArmadillo]; }; EBASS = derive2 { name="EBASS"; version="0.1"; sha256="14hxzj06wrc4ihflr7dqk28fsjwbcizr0jy54vhv0mk1y1gd4201"; depends=[]; }; EBEN = derive2 { name="EBEN"; version="4.6"; sha256="0gcf5b2viiq69vs8bd8nhk65g9sbzgg212w7zpnz4y6cv9jkk5zz"; depends=[]; }; @@ -963,6 +1005,7 @@ in with self; { EBglmnet = derive2 { name="EBglmnet"; version="4.1"; sha256="0wlscmimj74alcr8k5h1g3alvlpss4g2ah7zkpd42akam3zb4s5z"; depends=[]; }; EBrank = derive2 { name="EBrank"; version="1.0.0"; sha256="1qzhrr3n2zv31mjp224b35324nr9nigzazyfv11j4zhwl1ipf632"; depends=[]; }; ECFsup = derive2 { name="ECFsup"; version="0.1-2"; sha256="0fpcab0gjgsc3sx0plpx068rw3a7kfzs2nyrr477a5m0rcbqf1kh"; depends=[foreach Rcpp RcppArmadillo]; }; + ECLRMC = derive2 { name="ECLRMC"; version="1.0"; sha256="01z2hmbpb754s2rsvx3i5wf7kkkr2mvs2g89ih2bqrif7w5rmgyg"; depends=[softImpute]; }; ECOSolveR = derive2 { name="ECOSolveR"; version="0.4"; sha256="14dpja9wr1qqip388c8b6xvdvdpwwmyq5piv182ir0rwrla5nzdb"; depends=[Matrix]; }; ECctmc = derive2 { name="ECctmc"; version="0.2.5"; sha256="0prryvc17bm1xrhzlqk2w9nj181bg99j1dph3d36h0n1vfq1d7if"; depends=[Rcpp RcppArmadillo]; }; ECharts2Shiny = derive2 { name="ECharts2Shiny"; version="0.2.13"; sha256="0dq8ja4ydxnc7qx35qhh9ryqgi7ambwz6ka2821mmq3p994crswn"; depends=[jsonlite shiny]; }; @@ -973,20 +1016,22 @@ in with self; { EDMeasure = derive2 { name="EDMeasure"; version="1.2.0"; sha256="1gyv86vip0a3939dbbwz29xkqzncw24r68fzykdjnv3b995510iv"; depends=[dHSIC energy rBayesianOptimization]; }; EDR = derive2 { name="EDR"; version="0.6-6"; sha256="10m92p3fy5z2kca4h9awwmvs4pqri92habkvgjvjl5ira09yvyi7"; depends=[sm]; }; EEM = derive2 { name="EEM"; version="1.1.1"; sha256="0w20kakgcpyhfi7fcrss4w67pbaj87hi2scy7g05q3sg2ygac7gj"; depends=[colorRamps ggplot2 R_utils reshape2 sp]; }; - EFAutilities = derive2 { name="EFAutilities"; version="1.2.2"; sha256="1gknnfyhv16a16wgach0ps9wd08d75bach4p80vjq6ld9fjvpw2h"; depends=[GPArotation mvtnorm plyr]; }; + EFAutilities = derive2 { name="EFAutilities"; version="1.2.3"; sha256="1r2ma22r1bs5yn0k4c4p2ks571vp6bzmr4wsd25w535k5qfjx2np"; depends=[GPArotation mvtnorm plyr]; }; EFDR = derive2 { name="EFDR"; version="0.1.1"; sha256="0jgznwrd40g9xmvhrd7b441g79x41ppfdn6vbsbzc0k5ym1wzb1p"; depends=[doParallel dplyr foreach gstat Matrix sp tidyr waveslim]; }; EFS = derive2 { name="EFS"; version="1.0.3"; sha256="1q8cf8dnxpv5s3lr9145y0wjhak4rz18dzah4xfs5qr4c8nlpl54"; depends=[party pROC randomForest ROCR]; }; - EGRET = derive2 { name="EGRET"; version="2.6.0"; sha256="0alr47pmq1ml64j500vkqwmvrqa3i1ccbf3w7w44fbbjy1vfp04a"; depends=[dataRetrieval fields lubridate survival truncnorm]; }; - EGRETci = derive2 { name="EGRETci"; version="1.0.2"; sha256="15jf4bgxvqqz64y4i6ncfj0ymgwmhahxlhdnfps4zj7gwxgcbvqh"; depends=[binom EGRET lubridate]; }; + EGRET = derive2 { name="EGRET"; version="3.0.0"; sha256="1zl93cf8wmbxc095bsw0ngsfalgrydgn3mvnsnpzg3bp18idvwsw"; depends=[dataRetrieval fields foreach survival truncnorm]; }; + EGRETci = derive2 { name="EGRETci"; version="2.0.0"; sha256="1jndrkg3wn46d2fxb6l4f77v65vvq0ir91zr3iyh01lhlksnf33j"; depends=[binom EGRET]; }; EHR = derive2 { name="EHR"; version="0.1-3"; sha256="1y12j0sjr1zp3bzha1p31f903js674l6ifjccw0y9718sry8dbv2"; depends=[logistf]; }; EIAdata = derive2 { name="EIAdata"; version="0.0.3"; sha256="12jgw3vi2fminwa4lszczdr4j4svn2k024462sgj1sn07a4a4z2s"; depends=[plyr XML xts zoo]; }; EILA = derive2 { name="EILA"; version="0.1-2"; sha256="0wxl9k4fa0f7jadw3lvn97iwy7n2d02m8wvm9slnhr2n8r8sx3hb"; depends=[class quantreg]; }; EKMCMC = derive2 { name="EKMCMC"; version="0.1.0"; sha256="0sfj6w8780fik0ar9bg8zrxkj10wqagvwrngd58g50fc0z4lhr53"; depends=[numDeriv]; }; EL = derive2 { name="EL"; version="1.0"; sha256="13r7vjy2608h8jph8kwy69rnkg98b2v69117nrl728r3ayc46a18"; depends=[]; }; - EL2Surv = derive2 { name="EL2Surv"; version="1.0"; sha256="1vrm0w9rmy4vfkpzq804p216cxw4vvp91g77k4vvzv4z87gkqfhq"; depends=[survival]; }; + EL2Surv = derive2 { name="EL2Surv"; version="1.1"; sha256="0bn2481rf61qnia468y7k95hhazjaghrv919a2y9ar5wcz5nq2kk"; depends=[survival]; }; ELMR = derive2 { name="ELMR"; version="1.0"; sha256="0pd3drv485xbdyfwm28kjpd0nd0zv1khfwzki1gh5p1gz9ndwr2x"; depends=[]; }; + ELMSO = derive2 { name="ELMSO"; version="1.0.0"; sha256="0bsqx2630m817hi5p0rz8cfp5gyzqxyrysba5nm189h556k4c3a4"; depends=[]; }; ELT = derive2 { name="ELT"; version="1.6"; sha256="0vbrf912m6f80sqyyrp0z4jhq38fnmcy6hgwy0qh8wgk3p1aqm7c"; depends=[lattice latticeExtra locfit xlsx]; }; - ELYP = derive2 { name="ELYP"; version="0.7-3"; sha256="1d91r59m85k91kcjjlvhvbsa9855fyd702bwj7drvk36ssfr8qb9"; depends=[survival]; }; + ELYP = derive2 { name="ELYP"; version="0.7-5"; sha256="1j2vwcs443x3pf4zypyvbkn8fb5if9b9hf1s821jjjpgach573sc"; depends=[survival]; }; + EM_Fuzzy = derive2 { name="EM.Fuzzy"; version="1.0"; sha256="0sz4zkjn6rdzdqmkq6j24bd4sj91y5lan31bldxdfskgz0jpzhbr"; depends=[DISTRIB FuzzyNumbers]; }; EMA = derive2 { name="EMA"; version="1.4.5"; sha256="16iq5a3yrilchqmkyb4g5bmmgpw6psm88n52gmlax75xbiwk8261"; depends=[affy AnnotationDbi Biobase biomaRt cluster FactoMineR gcrma GSA heatmap_plus MASS multtest siggenes survival xtable]; }; EMAtools = derive2 { name="EMAtools"; version="0.1.3"; sha256="1kzna29kd6s2hgli5azrfz85mbyl1x6knvhhhny2scf7a1fcijsy"; depends=[DataCombine ggplot2 lmerTest sjstats]; }; EMC = derive2 { name="EMC"; version="1.3"; sha256="0sdpxf229z3j67mr9s7z4adzvvphgvynna09xkkpdj21mpml23p6"; depends=[MASS mvtnorm]; }; @@ -996,23 +1041,25 @@ in with self; { EMMAgeo = derive2 { name="EMMAgeo"; version="0.9.4"; sha256="1i36s8mzp04alff6lqkc798xjzgn61wdpl5i0awjdvg26ka8v7lj"; depends=[GPArotation limSolve shape shiny]; }; EMMIXcskew = derive2 { name="EMMIXcskew"; version="0.9-5"; sha256="1ys5kvns6jlw2lk9m6xcy71wx1d581cmphiaxnp3hsqimc8wz7hq"; depends=[MASS mnormt rgl]; }; EMMIXgene = derive2 { name="EMMIXgene"; version="0.1.0"; sha256="1jadasvngxczyyc7gxpcw3jxhxai3p88l8lmj1jmdns5vdi2n4rl"; depends=[BH ggplot2 mclust Rcpp RcppArmadillo reshape scales]; }; + EMMIXmfa = derive2 { name="EMMIXmfa"; version="2.0.7"; sha256="178j76acdksajnh65l60l94zd4l8s3xmrj2am1h4i5g3jmmrj16i"; depends=[]; }; EMMIXskew = derive2 { name="EMMIXskew"; version="1.0.3"; sha256="05y1ivbzbsfab90925l3ahzd3b8y5kjfk3f0p2s9s3sfyxphqah7"; depends=[KernSmooth lattice mvtnorm]; }; EMMIXuskew = derive2 { name="EMMIXuskew"; version="0.11-6"; sha256="0japf0l0sj84jna7b5kirp6pgqa4c923ldwphb16ch2xxrgk5n5k"; depends=[MASS]; }; EMMLi = derive2 { name="EMMLi"; version="0.0.3"; sha256="1b36kyzvrdljmkysggv8jyaip78pj32ms0xhj2y568hd419lkh2p"; depends=[]; }; EMMREML = derive2 { name="EMMREML"; version="3.1"; sha256="0qwj4jlfhppjxwcjldh49b6idnagazrxybaid3k2c269wvxwvddq"; depends=[Matrix]; }; EMP = derive2 { name="EMP"; version="2.0.2"; sha256="0l9wyxmcl8b6jiykc4mim6npmz5wrsapk2wgxbfhg27dwdb847ha"; depends=[ROCR]; }; EMSC = derive2 { name="EMSC"; version="0.9.0"; sha256="13d915g7iyv724x35i9mr8msy5mhrpqhhva21vdinxbjdy6vdlr9"; depends=[pracma]; }; + EMSHS = derive2 { name="EMSHS"; version="1.0.0"; sha256="1lpv3243z5765b1dihqz9hc3dpw76nwy14mmd4253sw8xpy25w41"; depends=[Rdpack]; }; EMSaov = derive2 { name="EMSaov"; version="2.3"; sha256="1hpvwimhkl7za5s8j9n4a8883vy89jrxrhlh0k3cfprnndh4zz05"; depends=[shiny]; }; EMT = derive2 { name="EMT"; version="1.1"; sha256="0m3av1x3jcp3hxnzrfb128kch9gy2zlr6wpy96c5c8kgbngndmph"; depends=[]; }; EMVS = derive2 { name="EMVS"; version="1.0"; sha256="10ksrj1aav062cszg4ymnwsgib7a9hlnkksfcvmy26nx5gj2g7zl"; depends=[Rcpp RcppArmadillo]; }; EMbC = derive2 { name="EMbC"; version="2.0.1"; sha256="0id68ws6l858nvyy790m17j9gddxmm97z66x24w5r58dxi6yfcrp"; depends=[maptools mnormt RColorBrewer Rcpp RcppArmadillo sp]; }; - ENMeval = derive2 { name="ENMeval"; version="0.2.2"; sha256="1w8mjcmxxkx8lxxzzbjpv1i7cm6l8hhml7ynp80s9yiprr04bq9c"; depends=[dismo doParallel foreach raster rJava]; }; + ENMeval = derive2 { name="ENMeval"; version="0.3.0"; sha256="0q5s8nxig8kbr0cblfmf3k20ri19fjs770a0fnzsk0kwlac414hw"; depends=[dismo doParallel foreach maxnet raster]; }; ENiRG = derive2 { name="ENiRG"; version="1.0.1"; sha256="0yjy7g0pia4g18h7mawkxn77dnnqcajnbml21rrv63qwlr347355"; depends=[ade4 fgui gdata miniGUI raster rgrass7 sp]; }; ENmisc = derive2 { name="ENmisc"; version="1.2-7"; sha256="07rix4nbwx3a4p2fif4wxbm0nh0qr7wbs7nfx2fblafxfzhh6jc7"; depends=[Hmisc RColorBrewer vcd]; }; EQL = derive2 { name="EQL"; version="1.0-0"; sha256="0lxfiizkvsfls1km1zr9v980191af6qjrxwcqsa2n6ygzcb17dp5"; depends=[lattice ttutils]; }; EQUIVNONINF = derive2 { name="EQUIVNONINF"; version="1.0"; sha256="103wrry0cmikprihmgx8y4kk1pnbjis7rs1xw13w14v902xkr2rq"; depends=[BiasedUrn]; }; - ERP = derive2 { name="ERP"; version="2.0"; sha256="0y476ir8j54q20ibzpkla32wxp6yjv04ca67ry9kajq64ibflh7w"; depends=[corpcor fdrtool irlba mnormt pacman]; }; - ERSA = derive2 { name="ERSA"; version="0.1.0"; sha256="063i9fmdccyrbap7fgas9371zv13gpcgzhlsphsn8jw9nmzpdii4"; depends=[broom car combinat dplyr ggplot2 leaps modelr purrr RColorBrewer shiny tidyr]; }; + ERP = derive2 { name="ERP"; version="2.1"; sha256="0l3vgg7szfgi7a6qh93lh2sjnkwkhw02laxdl7x87jirmmsx3157"; depends=[corpcor fdrtool irlba mnormt pacman]; }; + ERSA = derive2 { name="ERSA"; version="0.1.1"; sha256="1b76rfjndw7s0z4qb6rc2s95z0hr9xn4d5qaja9bd721r0g5862k"; depends=[broom car combinat dplyr ggplot2 leaps purrr RColorBrewer shiny tidyr]; }; ES = derive2 { name="ES"; version="1.0"; sha256="1rapwf6kryr6allzbjk6wmxpj9idd3xlnh87rwbh6196xb7rp8lv"; depends=[]; }; ESEA = derive2 { name="ESEA"; version="1.0"; sha256="06r5lki32mxkznj6yxvlz0ikqcxm3jbaralv4qp9xrw6dy6yyg27"; depends=[igraph parmigene XML]; }; ESG = derive2 { name="ESG"; version="0.1"; sha256="1jw6239asv6lwxrz5v0r5pzg6v500bqxg8361sh4jj67rsrc7g9m"; depends=[]; }; @@ -1022,11 +1069,12 @@ in with self; { ETAS = derive2 { name="ETAS"; version="0.4.4"; sha256="0s0j7r1nyf82qz3lavsvyd11hl0jkq69c70wh00nfy93n2ygp376"; depends=[fields goftest lattice maps Rcpp spatstat]; }; ETC = derive2 { name="ETC"; version="1.3"; sha256="1nvb9n0my7h1kq996mk91canxi6vxy3mzhrshrvm13ixvl48lkkh"; depends=[mvtnorm]; }; ETLUtils = derive2 { name="ETLUtils"; version="1.4.1"; sha256="07wqrg7mnxmbdf2ibxj5kppl4sd3l608yfhbbsngkhpsrm203qva"; depends=[bit ff]; }; - EValue = derive2 { name="EValue"; version="1.1.4"; sha256="09b66sck5r2ysjxpjhwgjcapx6wj1jg3v56b0x48dk7bqzmmizsd"; depends=[devtools ggplot2 metafor msm]; }; + EValue = derive2 { name="EValue"; version="1.1.5"; sha256="0lfm3458mh1rfcxhr4gm8gls9lssy277fxi5rbkysls88282j4dc"; depends=[devtools ggplot2 metafor msm]; }; EW = derive2 { name="EW"; version="1.1"; sha256="0wc3v9qisiikvlp28xhlgsxb92fhkm6vslia6d0vpihyai0p1h1g"; depends=[]; }; EWGoF = derive2 { name="EWGoF"; version="2.2.1"; sha256="0n1fx6k9ndb2s9ybzizbqz662c9s1f48q6v697pqhnfy9si1nplz"; depends=[Rcpp]; }; EXRQ = derive2 { name="EXRQ"; version="1.0"; sha256="1iqsr52sl2j5q03122a7rsp6n6a2bkysk2r908c89l36gk4sj2i5"; depends=[mnormt quantreg]; }; - Eagle = derive2 { name="Eagle"; version="1.0.2"; sha256="0n36h23jkac93d9f13bdwvac0fv198fjmh3981z32cn9glz0xbl8"; depends=[data_table matrixcalc Rcpp RcppEigen shiny shinyBS shinyjs shinythemes]; }; + EZtune = derive2 { name="EZtune"; version="1.0.0"; sha256="0a74wnmxbvnm1zil0slg4kphvqc1n03y26zp1a0gpawpkfxcmbch"; depends=[ada doParallel e1071 GA gbm mlbench]; }; + Eagle = derive2 { name="Eagle"; version="1.1.0"; sha256="1n2aqp6pd7cglhmnhf8g086xv4468hhqx6qvlwjbvj6diwhym35c"; depends=[data_table matrixcalc Rcpp RcppEigen shiny shinyBS shinyFiles shinyjs shinythemes]; }; EasyABC = derive2 { name="EasyABC"; version="1.5"; sha256="17qv6y8sf2iwwqcv5wfg6sii259gv5jyr72dnfpir2bw78wb3mqx"; depends=[abc lhs MASS mnormt pls tensorA]; }; EasyHTMLReport = derive2 { name="EasyHTMLReport"; version="0.1.1"; sha256="1hgg8i7py7bx48cldyc7yydf0bggmbj3fx3kwiv9jh1x5wyh929z"; depends=[base64enc ggplot2 knitr markdown reshape2 scales xtable]; }; EasyMARK = derive2 { name="EasyMARK"; version="1.0"; sha256="10slkblbyxq98c3sxgs194dnkx996khfcpxj6jhz355dp35z7c9d"; depends=[coda doParallel foreach MASS random rjags stringr]; }; @@ -1035,30 +1083,32 @@ in with self; { Ecdat = derive2 { name="Ecdat"; version="0.3-1"; sha256="1lvfp2ih8ng3kn3cia687j5fd27iwiak7gk3bhgjp8bnlgblqq02"; depends=[Ecfun]; }; Ecfun = derive2 { name="Ecfun"; version="0.1-7"; sha256="0s4hhvwyi411xr7c1fv098nmwqjcyvh8vy65j5w9hd80l864lvkl"; depends=[fda gdata jpeg MASS RCurl stringi TeachingDemos tis XML]; }; EcoGenetics = derive2 { name="EcoGenetics"; version="1.2.1-5"; sha256="1953q374msvdw91m2nagxkwh5r9gnq5qss6l6mf34hayq3kwm8s9"; depends=[d3heatmap doParallel edgebundleR foreach ggplot2 htmlwidgets igraph jsonlite magrittr networkD3 party pheatmap plotly raster reshape2 rgdal rkt SoDA sp]; }; - EcoHydRology = derive2 { name="EcoHydRology"; version="0.4.12"; sha256="03dzdw79s0cnnd7mv6wfxw374yf66dlcmj10xh6sh5i352697xp1"; depends=[DEoptim operators topmodel XML]; }; + EcoHydRology = derive2 { name="EcoHydRology"; version="0.4.12.1"; sha256="075kgy6cxppkclk6nj5xs1f5yv9w8cpr09xwhf2101a6wswknb88"; depends=[DEoptim operators topmodel XML]; }; EcoIndR = derive2 { name="EcoIndR"; version="1.2"; sha256="1p2m4kramcf71xlm9hbk5l5mb8nmjfac1p3csai7m2gmikf559yj"; depends=[]; }; - EcoNetGen = derive2 { name="EcoNetGen"; version="0.2.0"; sha256="194gry90h6m91zjvv7na8gyf3rws3mzv7rk5xhwrr2znlgcalzis"; depends=[ggplot2 igraph]; }; + EcoNetGen = derive2 { name="EcoNetGen"; version="0.2.2"; sha256="1gz3h97i8bcd3nkkrfl5wwxwjkw0z7qvj1bjksdjplchkag0nk3x"; depends=[ggplot2 igraph]; }; EcoSimR = derive2 { name="EcoSimR"; version="0.1.0"; sha256="13ni3vdfahqjyb9xrv7fmnbj5m5n3jwfh1bl9r0bvhi5w72kb7rj"; depends=[MASS]; }; EcoTroph = derive2 { name="EcoTroph"; version="1.6"; sha256="0zi6g0ra107s47r32mm9h6r1wll3avi0mpjmhcr0nj9y48nv14w3"; depends=[XML]; }; - EcoVirtual = derive2 { name="EcoVirtual"; version="1.0"; sha256="1adhxwi22psr81xh1szjvn6ycv4zw31xjnswk65iazk3sc4vz7wc"; depends=[]; }; + EcoVirtual = derive2 { name="EcoVirtual"; version="1.1"; sha256="1aryl2sb5ak390lgnm427ilm6xv9lmsjhwdnapzc033zvqb099gj"; depends=[]; }; Ecohydmod = derive2 { name="Ecohydmod"; version="1.0.0"; sha256="0imkzjqp3g28l42jz5m4p85wg5rawmn9hy1wys9xndnaliv6d7r2"; depends=[]; }; EconDemand = derive2 { name="EconDemand"; version="1.0"; sha256="1slpwiaxj7w21zdri9myrzwbwzl62m3cnp0g4fr2rkdlzgb6j5yj"; depends=[]; }; EdSurvey = derive2 { name="EdSurvey"; version="2.0.3"; sha256="1aw0b2i7vhfz11nr6ywk873cmgvpfvim89r3m6paqgnq01yyw8nw"; depends=[data_table Formula haven LaF lfactors magrittr MASS Matrix NAEPprimer RColorBrewer readr readxl rvest stringi stringr tibble wCorr xml2 xtable]; }; EffectLiteR = derive2 { name="EffectLiteR"; version="0.4-2"; sha256="1vkg5gi0gysnw0gz9ah8pdnnlkdfsz0jy53ps2jnnpy8lbr45zc9"; depends=[car foreign ggplot2 lavaan lavaan_survey nnet shiny survey]; }; EffectStars = derive2 { name="EffectStars"; version="1.9"; sha256="15n5mrba2s0qxcg3zikfwpxqwv38h39zmvj8sz62ni4pdhrhhjh3"; depends=[VGAM]; }; EffectStars2 = derive2 { name="EffectStars2"; version="0.1-2"; sha256="0121zb627zwkgbb84sn2dclph56dc5rkfjpci5xwd0w99vh3q66l"; depends=[miscTools VGAM]; }; - EffectTreat = derive2 { name="EffectTreat"; version="0.3"; sha256="1y8b1867idjbd7i39hhryg4nyijlv6d828z0jspp80fka3sp8xpw"; depends=[]; }; + EffectTreat = derive2 { name="EffectTreat"; version="0.4"; sha256="05r8frrir2dnivj21raczchf9qligqdccnnpj1kwi0zgr5h4spz6"; depends=[]; }; EffectsRelBaseline = derive2 { name="EffectsRelBaseline"; version="0.5"; sha256="1dsnakcrgmlx44599ii92wvhxbxrh0hij59709wsskx1x1152zvh"; depends=[]; }; EfficientMaxEigenpair = derive2 { name="EfficientMaxEigenpair"; version="0.1.4"; sha256="1s0i9a2vk2g4f5gadsvzjfkw91hcjsrbyjg2vgnj1v17xrwgp40w"; depends=[]; }; ElastH = derive2 { name="ElastH"; version="0.3.1"; sha256="1xgmz0xirvdyjz8l31zb2j91nj0g8ffhvzp44b97473fsj06n1g6"; depends=[dlm]; }; ElemStatLearn = derive2 { name="ElemStatLearn"; version="2015.6.26"; sha256="0r8d0fm4yx7iawcsikksd7i01kbyqz3xkdls74f3ngkvj4iq1rqc"; depends=[]; }; EloChoice = derive2 { name="EloChoice"; version="0.29"; sha256="1r54laim7i8hzgyir47xq7qw8hxzsdw1ss10sljq1rm2lpsci6wk"; depends=[Rcpp RcppArmadillo]; }; + EloOptimized = derive2 { name="EloOptimized"; version="0.3.0"; sha256="185vh8h6r5wqcbaq3glq8k3fr8jp6h3q2h2ly54agi6bi3fvbs05"; depends=[BAMMtools dplyr lubridate magrittr reshape2 rlang rlist]; }; EloRating = derive2 { name="EloRating"; version="0.43"; sha256="0gzpi4qjiqn0lzjwy37pkz6fg7dkp2hv2dfqgzfk32wsj0bswgab"; depends=[zoo]; }; ElstonStewart = derive2 { name="ElstonStewart"; version="1.1"; sha256="1y2g4x3fhi78c2406bk8r8c3x9zhx8ya3qlbnypdm65j0minixsn"; depends=[digest kinship2]; }; Emcdf = derive2 { name="Emcdf"; version="0.1.2"; sha256="0jb59jp1drcwipmk6yzg0cl366i8nhffa13c3x3fmhaj7ifv77vv"; depends=[lattice Rcpp]; }; EmiStatR = derive2 { name="EmiStatR"; version="1.2.1.1"; sha256="1fid29ipmrq2557wcva1miifgwxdcm8g27ws5wb1lq6yiaz0z4w0"; depends=[doParallel foreach lattice shiny xts zoo]; }; - EmissV = derive2 { name="EmissV"; version="0.664.7"; sha256="09m5h0fgj7pavfxwh4anihpq69dkqay9z4xdj0c3rbqvsxgq4bx3"; depends=[data_table lwgeom ncdf4 raster sf sp units]; }; + EmissV = derive2 { name="EmissV"; version="0.664.9"; sha256="0y7bmkv5lwlgimc5prfib321z1wq7xvyfgrfv8wk0wb17d6kk0dp"; depends=[data_table lwgeom ncdf4 raster sf sp units]; }; EmpiricalCalibration = derive2 { name="EmpiricalCalibration"; version="1.3.6"; sha256="0fiwvdzcyz6ayzqfa6j2ygpab1cwbi04gd2c2g1j9qbdq95myipa"; depends=[ggplot2 gridExtra]; }; + EncDNA = derive2 { name="EncDNA"; version="1.0.1"; sha256="1mp9blxa29jwimgp58ligayzq3ydfa2sccs2ppn3ki2sqq01xdpp"; depends=[Biostrings]; }; EnergyOnlineCPM = derive2 { name="EnergyOnlineCPM"; version="1.0"; sha256="1a3wvclqdwcvq5inhliwjnd7xzqbjvzs8h8ncy6qlhjq6s5n7nm8"; depends=[energy MASS]; }; EngrExpt = derive2 { name="EngrExpt"; version="0.1-8"; sha256="0zclvckj2i7j4kfs58hcjcl722vl2y6dcnjz238cjfgwv279gqhp"; depends=[lattice]; }; EnsCat = derive2 { name="EnsCat"; version="1.1"; sha256="1rp354fqq2ihjrmqw9j1qdy86md80xml5sgh2zbyabw3zddmgyn2"; depends=[dendextend ggdendro ggplot2 seqinr]; }; @@ -1068,12 +1118,12 @@ in with self; { EnsemblePenReg = derive2 { name="EnsemblePenReg"; version="0.7"; sha256="00218yh0vzlb5g94asq5nz4i8blppskdzz9fl4c0v3fld3kxz2md"; depends=[EnsembleBase glmnet]; }; EntropyEstimation = derive2 { name="EntropyEstimation"; version="1.2"; sha256="13kb83lfpkw6yq687j0ci23yn5c9dqjibybyyaplk6jixy08lrvy"; depends=[]; }; EntropyExplorer = derive2 { name="EntropyExplorer"; version="1.1"; sha256="02ljnq9ayxg4lrrnb6nlxr1k5ki8dd5i8hjb9fvvb19hwr2id5h4"; depends=[]; }; - EnvCpt = derive2 { name="EnvCpt"; version="1.0"; sha256="0rdcxb924ij3rdcnzfz8pxahvwza2qi2siqpxsafjkg2mrqil9kj"; depends=[changepoint forecast MASS zoo]; }; + EnvCpt = derive2 { name="EnvCpt"; version="1.1.1"; sha256="10j0hsy2ff1zj6bb03cngrw19ynyz65rcpxyk6vpqdqcdkpf3zf9"; depends=[changepoint MASS zoo]; }; EnvNicheR = derive2 { name="EnvNicheR"; version="1.4"; sha256="0hxx9wmzlw0clvdgdsy8msc78nvm81j3naxr57i7lqqa360sjy3a"; depends=[IDPmisc]; }; - EnvStats = derive2 { name="EnvStats"; version="2.3.0"; sha256="0f0sda26in2a25vq8xr6pkskjk10q2pg463h9c1xap3bghq4xgc3"; depends=[ggplot2 MASS nortest]; }; + EnvStats = derive2 { name="EnvStats"; version="2.3.1"; sha256="0ang2s222znrvzvidyvj2sa2bqx95bxicff64p6w2a7z88mx8lyp"; depends=[ggplot2 MASS nortest]; }; EnviroPRA = derive2 { name="EnviroPRA"; version="1.0"; sha256="0yirh3vy7wap0qmm3kvjz9y68gcvp9i8qshv80wh8aijxwklpr8n"; depends=[fitdistrplus kSamples MASS truncdist]; }; EnviroStat = derive2 { name="EnviroStat"; version="0.4-2"; sha256="0ckax6vkx0vwczn21nm1dr8skvpm59xs3dgsa5bs54a3xhn5z9hs"; depends=[MASS]; }; - Epi = derive2 { name="Epi"; version="2.30"; sha256="0gfq4zg2c9cnwh7islsbbzaw80a2wwnh3kjv3wr1fvp11hhhdknk"; depends=[cmprsk data_table etm MASS Matrix numDeriv plyr survival zoo]; }; + Epi = derive2 { name="Epi"; version="2.32"; sha256="14n24xlm7pwdc54w2hlpjhfal1zpzm87rv3rjfckiz47d3w7dwqm"; depends=[cmprsk data_table etm MASS Matrix mgcv numDeriv plyr survival zoo]; }; EpiBayes = derive2 { name="EpiBayes"; version="0.1.2"; sha256="1qfir0dl085c9ib1acsygmj7gihc4ar98k5niqdsgnmji88h17y2"; depends=[coda epiR scales shape]; }; EpiContactTrace = derive2 { name="EpiContactTrace"; version="0.12.0"; sha256="1i84fslz8sdngvkv34zhzjwzrzzxx6f4s31p8f5smmf028jlpyys"; depends=[]; }; EpiCurve = derive2 { name="EpiCurve"; version="2.1-1"; sha256="0y6llpxa8xyfn9cxhq35mzfp1gc7la1708q85q4hz0l115abvk92"; depends=[dplyr ggplot2 ISOweek RColorBrewer scales timeDate]; }; @@ -1082,12 +1132,13 @@ in with self; { EpiILM = derive2 { name="EpiILM"; version="1.4.2"; sha256="16vml2p7c4nv0lfis661x7b9wimrni1ncpa256dh99cps9508j28"; depends=[coda]; }; EpiILMCT = derive2 { name="EpiILMCT"; version="1.1.2"; sha256="1rxq9z5lhcgzn02d9k6vgl2cb5x0s9gsly63byx4gg1h91bsvmp6"; depends=[coda]; }; EpiModel = derive2 { name="EpiModel"; version="1.6.5"; sha256="1h9490x7vna8z2dib6vgkxhpqvbybg655k88jn48i6qkda8dzv54"; depends=[ape deSolve doParallel ergm foreach ggplot2 lazyeval network networkDynamic RColorBrewer tergm]; }; - EpiStats = derive2 { name="EpiStats"; version="1.1"; sha256="0xd9b3miyk2jijraph7zac7k7hqm0vn9wg1fsccfl17xy6h2wq2w"; depends=[dplyr epiR]; }; + EpiStats = derive2 { name="EpiStats"; version="1.2"; sha256="102s7637afm3scif20r75wcfkz9g8k4w55qxv1gqqc1kcmn2zqar"; depends=[dplyr epiR]; }; EpistemicGameTheory = derive2 { name="EpistemicGameTheory"; version="0.1.2"; sha256="0b2gnrvhlsw85qv63ib32pj55l7w63wgvbrj5rb209g6h46fby8m"; depends=[lpSolve]; }; Eplot = derive2 { name="Eplot"; version="1.0"; sha256="1glmkjjj432z9g4gi56pgvfrm5w86iplirnd5hm4s99qci2hgc64"; depends=[]; }; - Equalden_HD = derive2 { name="Equalden.HD"; version="1.0"; sha256="19b529yaffls43fr5vrcrrvkia27mjrcx69r9svafk61z96i6pfm"; depends=[]; }; + Equalden_HD = derive2 { name="Equalden.HD"; version="1.1"; sha256="16cs9hmr14byy11dapkh8c7ygpkks00lirbbpmy5bxgi4pvif8a3"; depends=[]; }; EstCRM = derive2 { name="EstCRM"; version="1.4"; sha256="1p99hmmyiy3havj72jd4xksr1j9gfmy0i7z7f3vqs5sqp72alq1k"; depends=[Hmisc lattice]; }; EstHer = derive2 { name="EstHer"; version="1.0"; sha256="1j8sczwfzil16j85mw5d1c7cxy7wimh0qq7zhmkh7mfnr36m9phr"; depends=[glmnet MASS Rcpp RcppArmadillo]; }; + EstMix = derive2 { name="EstMix"; version="1.0.1"; sha256="13zwhxm0qm83c8k5k4slvq2snkmbq1zz3i5cqvxxwhvkb4b8aja4"; depends=[PSCBS Rcpp RcppArmadillo]; }; EstSimPDMP = derive2 { name="EstSimPDMP"; version="1.2"; sha256="05gp0gdix4d98111sky8y88p33qr5w4vffkp6mg9klggn37kdj8j"; depends=[]; }; EstimateGroupNetwork = derive2 { name="EstimateGroupNetwork"; version="0.1.2"; sha256="148srhlpzh0scvnkjbkyia1pr8a2ridabm3dahw4zn7p3cryiyb1"; depends=[igraph qgraph]; }; EthSEQ = derive2 { name="EthSEQ"; version="2.1.2"; sha256="0w75d8kw1bf4mfgk8rrx6vzq002z2588kxgadyfag0vk9s4akxi3"; depends=[data_table gdsfmt geometry MASS plot3D SNPRelate]; }; @@ -1096,11 +1147,12 @@ in with self; { EvalEst = derive2 { name="EvalEst"; version="2015.4-2"; sha256="1jkis39iz3zvi5yfd0arvw7bym6naq45f5cravywg8c37n9v967x"; depends=[dse setRNG tfplot tframe]; }; EvaluationMeasures = derive2 { name="EvaluationMeasures"; version="1.1.0"; sha256="0b65y4rb650hhlgc18z0sm0danrrawqkazzdl9krl877djrgx87g"; depends=[]; }; Evapotranspiration = derive2 { name="Evapotranspiration"; version="1.12"; sha256="065rd8hwbzanfd0px0nli9szj9afm06a07vxl9bwj9n744whi3r3"; depends=[zoo]; }; + EventDetectR = derive2 { name="EventDetectR"; version="0.3.1"; sha256="1nh859q9d2k9fpgyj9g7dvhbhbychhng174mlmyl8x9l7dvmiydx"; depends=[forecast imputeTS]; }; EventStudy = derive2 { name="EventStudy"; version="0.34"; sha256="04w8cjmpy0ndcrad20ni9wa03pds8bvirks258pxyflx2kdvj0bf"; depends=[curl data_table dplyr ggplot2 httr jsonlite magrittr miniUI openxlsx purrr RColorBrewer readr rstudioapi scales shiny stringr testthat tidyquant]; }; EvoRAG = derive2 { name="EvoRAG"; version="2.0"; sha256="0gb269mpl2hbx1cqakv3qicpyrlfb4k8a3a7whhg90masbgmh8f6"; depends=[]; }; EvolutionaryGames = derive2 { name="EvolutionaryGames"; version="0.1.0"; sha256="1v6xpxk4kbjbmv8vh517rd76gyrd9znpxqdh4jqz8lvdpnpla4wv"; depends=[deSolve geometry ggplot2 interp MASS reshape2 rgl]; }; Evomorph = derive2 { name="Evomorph"; version="0.9"; sha256="1br2fyggwz2mxpic8sk384xq1lpbpv0j5gf6xyzhkn2n7kfpf6d5"; depends=[geomorph ggplot2 reshape2 stringr]; }; - ExPanDaR = derive2 { name="ExPanDaR"; version="0.2.0"; sha256="1iwkzrfdvxgik5c1vq04351var0micf4vh6zmkzyd8qbyvxwnnch"; depends=[CodeDepends corrplot dplyr DT ggplot2 Hmisc kableExtra lfe PKI scales shiny shinycssloaders stargazer tictoc tidyr]; }; + ExPanDaR = derive2 { name="ExPanDaR"; version="0.3.0"; sha256="1d6jzgdyawyvs72jxlw4dxkk6566ya67p6lsj70wdakmaixwfsmj"; depends=[corrplot dplyr DT ggplot2 Hmisc kableExtra lfe lmtest multiwayvcov PKI rio scales shiny shinycssloaders stargazer tictoc tidyr]; }; ExPosition = derive2 { name="ExPosition"; version="2.8.19"; sha256="04s9kk8x6khvnryg6lqdwnyn79860dzrjk8a9jyxgzp94rgalnnz"; depends=[prettyGraphs]; }; Exact = derive2 { name="Exact"; version="1.7"; sha256="0d0h406w2l99gxq6pmh9crxxrvdidcajk7bqzmifl7nfb77vp1av"; depends=[]; }; ExactCIdiff = derive2 { name="ExactCIdiff"; version="1.3"; sha256="1vayq8x7gk1fnr1jrlscg6rb58wncriybw4m1z0glfgzr259103y"; depends=[]; }; @@ -1127,16 +1179,15 @@ in with self; { FBN = derive2 { name="FBN"; version="1.5.1"; sha256="0723krsddfi4cy2i3vd6pi483qjxniychnsi9r8nw7dm052nb4sf"; depends=[]; }; FCGR = derive2 { name="FCGR"; version="1.0-0"; sha256="015nnnc9fasx0qjrc3lbxv14rqwyx36xzsw9076grwm5pqahrdsb"; depends=[kerdiest KernSmooth MASS mgcv nlme pspline sfsmisc]; }; FCMapper = derive2 { name="FCMapper"; version="1.1"; sha256="1yjh8rs65nqslvwv7x4rif469zds41s7v3vhq6pca1y17kvj2in1"; depends=[igraph]; }; - FCNN4R = derive2 { name="FCNN4R"; version="0.6.2"; sha256="089vq8kaag4j6xl3h9pb3ch8lfg0mmi96jgm4xhgr40rr0m3ijma"; depends=[Rcpp]; }; FD = derive2 { name="FD"; version="1.0-12"; sha256="0xdpciq14i8rh7v6mw174hip64r7mrzhx7gwri3vp9y7a1380sbi"; depends=[ade4 ape geometry vegan]; }; FDGcopulas = derive2 { name="FDGcopulas"; version="1.0"; sha256="1i86ns4hq74y0gnxfschshjlc6if3js0disjb4bwfizaclwbw3as"; depends=[numDeriv randtoolbox Rcpp]; }; FDRSeg = derive2 { name="FDRSeg"; version="1.0-3"; sha256="0dh6m5vlx664kryh56jzi3zxydjwa5217nhbwn6adp0q5qdh6d8a"; depends=[Rcpp stepR]; }; FDRreg = derive2 { name="FDRreg"; version="0.1"; sha256="17hppvyncbmyqpi7sin9qsrgffrnx8xjcla2ra6y0sqzam1145y4"; depends=[fda mosaic Rcpp RcppArmadillo]; }; FDRsampsize = derive2 { name="FDRsampsize"; version="1.0"; sha256="0g8kawzyi9x5yndvh330wzqw6rvcnprwq56ngd0j6z51hvvw8qhw"; depends=[]; }; - FDboost = derive2 { name="FDboost"; version="0.3-1"; sha256="1bwf3kkx912386ljb210hci1y2vg0wcd6v6i6arhzzbr7gc0y39q"; depends=[gamboostLSS MASS Matrix mboost mgcv stabs zoo]; }; - FENmlm = derive2 { name="FENmlm"; version="2.1.1"; sha256="00cm1k5lqa7i2aginhkw4f430gigr7cj7g6shr83z61axqfmwdg4"; depends=[MASS Matrix numDeriv Rcpp]; }; + FDboost = derive2 { name="FDboost"; version="0.3-2"; sha256="1ahdq49ijj4j2yykmzbpgrjn0sm09nzmd33k317y157hnf6zyxvs"; depends=[gamboostLSS MASS Matrix mboost mgcv stabs zoo]; }; + FENmlm = derive2 { name="FENmlm"; version="2.2.2"; sha256="1k8andhpk8drdcjnwvv7hzyfj0qnp6h843naxdvhbj1qp9gs9vr0"; depends=[Formula MASS numDeriv Rcpp]; }; FFD = derive2 { name="FFD"; version="1.0-6"; sha256="19yqb45qj54fmjkqfjbcqsx3wz6fk8inrqif9ds93xjkm6aaiqgp"; depends=[R2HTML tkrplot]; }; - FFTrees = derive2 { name="FFTrees"; version="1.3.5"; sha256="0qz3w7qh8lgl4fn2hmrd4mnp17vaz5yf7kcpcrm038xvqq3w5c5k"; depends=[circlize e1071 igraph progress randomForest rpart stringr yarrr]; }; + FFTrees = derive2 { name="FFTrees"; version="1.4.0"; sha256="0s2h81vdh8d41kwz5ja831q11wrb7ywdd7aq46x3y9sgg3aabd44"; depends=[caret circlize e1071 igraph pROC progress randomForest rpart stringr yarrr]; }; FField = derive2 { name="FField"; version="0.1.0"; sha256="05q16v2vv64qhbnf2l66dwzmvgzyaq8vxwwdabp534bw7z7zpi8q"; depends=[]; }; FGSG = derive2 { name="FGSG"; version="1.0.2"; sha256="1r3sjhzf9gcnbcx6rqr1s555z8lcwm3fxl096md2jji336ijlk79"; depends=[]; }; FGalgorithm = derive2 { name="FGalgorithm"; version="1.0"; sha256="1dq6yyb3l6c9fzvk9gs6pb240xb5hvc6fh8p3qd3c91b3m289mcc"; depends=[]; }; @@ -1148,17 +1199,19 @@ in with self; { FILEST = derive2 { name="FILEST"; version="1.0.3"; sha256="0i622rfr9sb22c922kk0gg4l1akx54m6zx7wy3w1p5xrr1zjjyvp"; depends=[KRIS rARPACK]; }; FIT = derive2 { name="FIT"; version="0.0.5"; sha256="1hky7m5b7n0d7lm79b7l7p055f8zfl7gsjdvbq09c4iwdli8h33n"; depends=[gglasso MASS Rcpp RcppEigen XML]; }; FITSio = derive2 { name="FITSio"; version="2.1-0"; sha256="021xmbavigg70m96xw1bvsdasi5yj2wmafgb6xw4b09fmyv9hvjp"; depends=[]; }; + FKF = derive2 { name="FKF"; version="0.1.5"; sha256="1qzf7y3f4xfirjkm795rcxckjbw6sn7xpilhkyvayqm2vyhf7518"; depends=[RUnit]; }; FLLat = derive2 { name="FLLat"; version="1.2-1"; sha256="0306bpwp2az4x4m5sv88hlh7vs0y5isfby7lxrn2gjnk76gg6mw1"; depends=[gplots]; }; FLR = derive2 { name="FLR"; version="1.0"; sha256="0k50vi73qj7sjps0s6b2hq1cmpa4qr2vwkpd2wv2w1hhhrj8lm0n"; depends=[combinat]; }; - FLSSS = derive2 { name="FLSSS"; version="5.2"; sha256="1px9n0rnjg32ngy8bs0z1jzmspnkn15q273w74vxjykqfd5xayfd"; depends=[Rcpp RcppParallel]; }; - FLightR = derive2 { name="FLightR"; version="0.4.6"; sha256="0q1azhpdkasjsca5z4p0gnp5iirs6f9dyg6pn8269x7k1mw0pib4"; depends=[bit CircStats circular fields GeoLight ggmap ggplot2 ggsn maptools mgcv nlme raster RcppArmadillo rgdal rgeos sp truncnorm]; }; + FLSSS = derive2 { name="FLSSS"; version="7.6"; sha256="1cjhzjl8s4bnx457v4pal945j2ij75s8gdbbr9a3cambh0sc821y"; depends=[Rcpp RcppParallel]; }; + FLightR = derive2 { name="FLightR"; version="0.4.7"; sha256="0qnhyn363c8yb541ngygm5jzax1csjdq0mmvvvazncirgk45q9y5"; depends=[bit CircStats circular fields GeoLight ggmap ggplot2 ggsn maptools mgcv nlme raster RcppArmadillo rgdal rgeos sp truncnorm]; }; FMC = derive2 { name="FMC"; version="1.0.0"; sha256="1pfqxx7slgcmw4al7i8hy59f4han6b0b7b5az7yh1mscdnghl9bj"; depends=[minimalRSD]; }; FME = derive2 { name="FME"; version="1.3.5"; sha256="1r1mb61hylsgcryac35bz1pzfcw27gzpvfwkkf0sh754ya6xh69n"; depends=[coda deSolve MASS minpack_lm minqa rootSolve]; }; FMP = derive2 { name="FMP"; version="1.4"; sha256="0w11a78nz4n7zih9h00xkv7prsy9hlxphbpa7hpnbvq9r98g08qm"; depends=[]; }; FMStable = derive2 { name="FMStable"; version="0.1-2"; sha256="00viigpqfbqc4hyl9cwicbwqf2ksjak28qrqaa16jhbqz93j4fck"; depends=[]; }; FMsmsnReg = derive2 { name="FMsmsnReg"; version="1.0"; sha256="0d58n7lz8d6xgzvyznmhw1byshyiiwk8dc462qr18cl51p0lqnkv"; depends=[mvtnorm]; }; - FNN = derive2 { name="FNN"; version="1.1"; sha256="1kncmiaraq1mrykb9fj3fsxswabk3l71fnp1vks0x9aay5xfk8mj"; depends=[]; }; + FNN = derive2 { name="FNN"; version="1.1.2.1"; sha256="1n61jrcmakqif8f827x4qnlhm2jqpj5fgjj65c4p0kdd8lzw8pqp"; depends=[]; }; FPCA2D = derive2 { name="FPCA2D"; version="1.0"; sha256="18bb90ppd9gd8pg9jxfyfkmlsaqk8w25fgaj9fk18ybm2nhsxqm6"; depends=[corpcor]; }; + FPCA3D = derive2 { name="FPCA3D"; version="1.0"; sha256="1hrk9caad2s76dx59clxhia45a85khk1y2ii7955f336x55q34a5"; depends=[]; }; FPDclustering = derive2 { name="FPDclustering"; version="1.2"; sha256="1qj1dddzcy2jx4903kmzzhcwfi13c2x9kva2n4rzqh5n560nvg57"; depends=[ThreeWay]; }; FPV = derive2 { name="FPV"; version="0.5"; sha256="0pxa8lbcxw2hx2n0frkx0pdndlcfm7gnh9qay9q53cf5gqzzwvvc"; depends=[FuzzyNumbers FuzzyNumbers_Ext_2]; }; FRACTION = derive2 { name="FRACTION"; version="1.0"; sha256="0g25dzsbharsq8bzfka96zccaqppdclax24mz5m080ddg4y8zj49"; depends=[]; }; @@ -1167,14 +1220,14 @@ in with self; { FREGAT = derive2 { name="FREGAT"; version="1.1.0"; sha256="04rcbwbwi53d8his0ss9hj4s2c28r292f4f2ayl70av7k74nnccy"; depends=[Matrix]; }; FREQ = derive2 { name="FREQ"; version="1.0"; sha256="01nra30pbnqdd63pa87lcws3hnhhzybcjvx2jqyxjghn6khz47j0"; depends=[]; }; FRESA_CAD = derive2 { name="FRESA.CAD"; version="3.0.1"; sha256="05hcds1g1hkpr3fww1i462p633xlhwv594fpbphvw8fm10mc0hns"; depends=[Hmisc miscTools pROC Rcpp RcppArmadillo stringr]; }; - FRK = derive2 { name="FRK"; version="0.2.1"; sha256="042j6n3yx46123d0qsghbynjf1h0iri4kfd92z5nbcgv7wggk4d3"; depends=[digest dplyr ggplot2 Hmisc Matrix plyr Rcpp sp spacetime sparseinv]; }; + FRK = derive2 { name="FRK"; version="0.2.2"; sha256="0m0ngxanyq19myzza4fb75k9vb67mv17iny847bv9qrgg2vbm5r8"; depends=[digest dplyr ggplot2 Hmisc Matrix plyr Rcpp sp spacetime sparseinv]; }; FRegSigCom = derive2 { name="FRegSigCom"; version="0.2.2"; sha256="1jbksgx561fc4bgsyz3d1b3amqc80bzzl96ri74rbd3lqbhgrn0y"; depends=[fda Matrix Rcpp RcppEigen]; }; FSA = derive2 { name="FSA"; version="0.8.20"; sha256="1vvsjwyb03wiqxlzgig3gxn9aj5lr7kx183gsjz2xysxp07rv9hf"; depends=[car dplyr dunn_test epitools gplots lmtest plotrix plyr sciplot]; }; FSAdata = derive2 { name="FSAdata"; version="0.3.6"; sha256="0r4g3s4a7hizxj7zlp8wb5sldnx6kc99vak8ww715bhzpzq40qf8"; depends=[]; }; FSInteract = derive2 { name="FSInteract"; version="0.1.2"; sha256="1aci1398aaz0nrl5jy6yh7xik355wf7pwngrsak4qsi94vdj05iy"; depends=[Matrix Rcpp]; }; FSTpackage = derive2 { name="FSTpackage"; version="0.1"; sha256="1fjqsl59fg4x9vkbv4b0qmfxlaa2q3rzpl40grv24yg6ixfagmdb"; depends=[CompQuadForm MASS Matrix mvtnorm SKAT]; }; FSelector = derive2 { name="FSelector"; version="0.31"; sha256="1ryqrwz9h7ggxvmxyw4viajlkvd3r7i6ihcfrwsz6axyk5y0qarg"; depends=[digest entropy randomForest RWeka]; }; - FSelectorRcpp = derive2 { name="FSelectorRcpp"; version="0.1.10"; sha256="1i844k8qacbxv4hzv2d8d0jxijf2p2r1xh1ihcp4dijc9ap8wvg8"; depends=[BH foreach iterators Rcpp RcppArmadillo testthat]; }; + FSelectorRcpp = derive2 { name="FSelectorRcpp"; version="0.2.1"; sha256="1xzb59p3byby5wbas48qpzkmsai7xk0nk1g1iz80m22b9p521n85"; depends=[BH foreach iterators Rcpp RcppArmadillo testthat]; }; FTICRMS = derive2 { name="FTICRMS"; version="0.8"; sha256="0kv02mdmwflhqdrkhzb55si5qnqqgdadgyabqc2hwr6iccn7aq8c"; depends=[lattice Matrix]; }; FTRLProximal = derive2 { name="FTRLProximal"; version="0.3.0"; sha256="0wnlswvxiw7gvmn9yq1v8jixwspfbvcg3rklqcd0ib38d72ww7w0"; depends=[Matrix]; }; FUNLDA = derive2 { name="FUNLDA"; version="1.1"; sha256="1qqwpics63qab43mvpm275rk9iywawr4gap0qa832i6iy3jp1h3c"; depends=[Rcpp RcppArmadillo]; }; @@ -1182,7 +1235,7 @@ in with self; { FWDselect = derive2 { name="FWDselect"; version="2.1.0"; sha256="0w0hkmhcz7h1lixk7p3yffbbalgxwh2lv463vqz361k80sri6wz7"; depends=[cvTools mgcv]; }; FacPad = derive2 { name="FacPad"; version="3.0"; sha256="0h7knzin0rfk25li127zwjsyz223w7nx959cs328p6b2azhgn59b"; depends=[MASS Rlab]; }; FactMixtAnalysis = derive2 { name="FactMixtAnalysis"; version="1.0"; sha256="1l4wfp39b7g38vdk6jpd5zq08sjhsg0s71f662aca2rj6l3a2x3r"; depends=[MASS mvtnorm]; }; - FactoClass = derive2 { name="FactoClass"; version="1.2.4"; sha256="0rzbzl32hk4mrs6njm4cnj84ifsf52ms5khy43m9bfmwwmadbilr"; depends=[ade4 ggplot2 ggrepel KernSmooth scatterplot3d xtable]; }; + FactoClass = derive2 { name="FactoClass"; version="1.2.7"; sha256="0hvlr9cw6wfckl8rzl5qqyp0h8rv8gcnyj6x930jq7h44kj0ji7d"; depends=[ade4 ggplot2 ggrepel KernSmooth scatterplot3d xtable]; }; FactoInvestigate = derive2 { name="FactoInvestigate"; version="1.3"; sha256="1924f5sfadgs47ja1ljwqm3slnmqqz1pwxhh9cn1rg1hi8g7db6f"; depends=[FactoMineR rmarkdown rrcov]; }; FactoMineR = derive2 { name="FactoMineR"; version="1.41"; sha256="1h20hydav6l2b7bngqw1av4l5rrh0wk58nhailga1f4qw9lrv259"; depends=[car cluster ellipse flashClust lattice leaps MASS scatterplot3d]; }; FactorsR = derive2 { name="FactorsR"; version="1.2"; sha256="0y6r5ch0h0sag1xinvnjr7q4495naygvi5iiqq9bc51ijv228c0m"; depends=[]; }; @@ -1203,12 +1256,11 @@ in with self; { FastRWeb = derive2 { name="FastRWeb"; version="1.1-1"; sha256="0xh3710kvnc60pz9rl5m3ym2cxf0mag9gi29y7j3fl4dh2k7zf74"; depends=[base64enc Cairo]; }; FastSF = derive2 { name="FastSF"; version="0.1.1"; sha256="1xajav45h57hchzkvl2pb4mz9xy433lq74jnry0icid8dai5xhwb"; depends=[limSolve Rcpp RcppArmadillo]; }; FatTailsR = derive2 { name="FatTailsR"; version="1.7-5"; sha256="1l2anaf4kixidmvya64ni5b78bl9w2n6xf1lnf297lkdka8gxigw"; depends=[minpack_lm timeSeries]; }; - FateID = derive2 { name="FateID"; version="0.1.2"; sha256="1ky03qc6vc2q8v9inanm0bmybjjcx53izjfylszhmnlgph1fp6n8"; depends=[DESeq2 destiny lle locfit pheatmap princurve randomForest RColorBrewer rgl Rtsne som zoo]; }; + FateID = derive2 { name="FateID"; version="0.1.4"; sha256="1v3zgxr8qydpkxzpbxn3spqy4xadf1h0wx3nk4ia9dkmxz6qq5hy"; depends=[lle locfit pheatmap princurve randomForest RColorBrewer rgl Rtsne som]; }; FeaLect = derive2 { name="FeaLect"; version="1.14"; sha256="1h6jc8n57mvyz3gi2jdx5xacwv5iim5sx86qzrg3v1higfr54b1l"; depends=[lars rms]; }; FeatureHashing = derive2 { name="FeatureHashing"; version="0.9.1.3"; sha256="0k8n3c0yiz6bb9rq6ra8z2hypb4hw4qcsdfbrgrw74kqivscs62i"; depends=[BH digest magrittr Matrix Rcpp]; }; - FedData = derive2 { name="FedData"; version="2.5.4"; sha256="18j98l3bx8psd13nb47y7qrs58ds1i1pbib1d6q1178pf1k474i3"; depends=[curl data_table devtools dplyr foreach Hmisc httr igraph lubridate magrittr ncdf4 raster readr rgdal rgeos sf soilDB sp stringr]; }; + FedData = derive2 { name="FedData"; version="2.5.5"; sha256="0krfz76mxw0dybm4adqf5mg53g8gpypp5sk2z99s7b54w196cmqh"; depends=[curl data_table devtools dplyr foreach Hmisc httr igraph lubridate magrittr ncdf4 raster readr rgdal rgeos sf soilDB sp stringr]; }; FeedbackTS = derive2 { name="FeedbackTS"; version="1.4"; sha256="1mcsr48hvrpfnk2f0z1bc8556jf848bpd8prm3y46gqdj452wpmm"; depends=[geoR mapdata maps proj4 sp]; }; - Fgmutils = derive2 { name="Fgmutils"; version="0.9.4"; sha256="0k5pafgrcb7smklgzgw2mf6npj55nm5fsr6k0xp6ji380rvdxc0y"; depends=[data_table devEMF ggplot2 gridExtra plyr png ReporteRs sqldf stringr]; }; FieldSim = derive2 { name="FieldSim"; version="3.2.1"; sha256="1snz2wja3lsgxys0mdlrjjvk5575cyd64mjipafibwcs97bva5x1"; depends=[RColorBrewer rgl]; }; FinAna = derive2 { name="FinAna"; version="0.1.2"; sha256="09svg5z52vv90ih85awgh6ns3pqi789qjm2wi1gb9hbg9v5g7pdv"; depends=[]; }; FinAsym = derive2 { name="FinAsym"; version="1.0"; sha256="0v15ydz4sq9djwcdcfp90mk8l951rry7h91d7asgg53mddbxjj6f"; depends=[]; }; @@ -1218,16 +1270,16 @@ in with self; { FinancialMath = derive2 { name="FinancialMath"; version="0.1.1"; sha256="11nhphvd7bvbc7xfs85rib763r1mpvxmsj6hgzfib5aifib5k5js"; depends=[]; }; FindAllRoots = derive2 { name="FindAllRoots"; version="1.0"; sha256="0n4wfm21qj5zn06jqnzxa0w9mfn18dqi6hk1jjqa56dxqw1k7vw0"; depends=[]; }; FindIt = derive2 { name="FindIt"; version="1.1.4"; sha256="1rnkxngkqsmqs0d0m8ihscpsigxbjgl5ga5nyfwf97b1hrbv4j37"; depends=[arm ggplot2 glinternet glmnet igraph lars lmtest Matrix quadprog sandwich]; }; - FinePop = derive2 { name="FinePop"; version="1.5.0"; sha256="0dis6nxdlgvznsv0817hnfc4nirv7vvzi0n1wd378zdn60j2fwbv"; depends=[]; }; + FinePop = derive2 { name="FinePop"; version="1.5.1"; sha256="184707yvh2mydx42vxrdgv0n4v2dad4an7c4yvlyb9d7z6h0sw2x"; depends=[]; }; FisHiCal = derive2 { name="FisHiCal"; version="1.1"; sha256="1dds629jlja3vw2l010n1334yh3z10nijqksr0q98ckd2yrwg2rf"; depends=[igraph Rcpp RcppArmadillo]; }; - FishResp = derive2 { name="FishResp"; version="0.3.0"; sha256="1rn4vpg33q7x7j0srjndz3c16gzl97f31pvcqcnbnp1c687irb6l"; depends=[chron lattice mclust respirometry rMR]; }; + FishResp = derive2 { name="FishResp"; version="1.0.2"; sha256="0ljibh3nchrlyq2bihaxacpqvw0simw6q4i9rv8lf04viyrbvi6y"; depends=[chron lattice mclust respirometry rMR]; }; + FisherEM = derive2 { name="FisherEM"; version="1.5.1"; sha256="1s7gfdw840f51mn76jvcnwpwcf3dzf2w81wlyxqkij45sink92yz"; depends=[elasticnet MASS]; }; FitAR = derive2 { name="FitAR"; version="1.94"; sha256="1mkk3kvfq4v0pdabnhbwrk31ji2mv2v6ns16xsvvr1qyg2fnx6hq"; depends=[bestglm lattice leaps ltsa]; }; FitARMA = derive2 { name="FitARMA"; version="1.6"; sha256="1r9mqrqkm4wh3nd6v9wmpj23gw21i4p89p6z4c7639kn4f590ldk"; depends=[FitAR]; }; FixSeqMTP = derive2 { name="FixSeqMTP"; version="0.1.2"; sha256="0v1cwq8gapgandm7wiw8p6av6qigydlpmwi6w02p1y7f0hf5ifnp"; depends=[]; }; FixedPoint = derive2 { name="FixedPoint"; version="0.5"; sha256="1jnkbb52g3avs0pm37g5qn4m3ssn2qc6adr8xp5z7ahsbkffkyw2"; depends=[MASS]; }; FlexDir = derive2 { name="FlexDir"; version="1.0"; sha256="1gb5alv9jsnw0135g63cy757pxhdw6cgwfm8dpcm8dj9zqg10dkm"; depends=[]; }; FlexGAM = derive2 { name="FlexGAM"; version="0.7.0"; sha256="1pjlsi747j347vwn94391xr3aknnspgw7rc1jnin7g0n1fgkcww4"; depends=[MASS Matrix mgcv scam]; }; - FlexParamCurve = derive2 { name="FlexParamCurve"; version="1.5-3"; sha256="0766ghwbdd7r4yj5xf31hnknn775ziw1hhrn13wf8bibyd8blz70"; depends=[nlme]; }; FloodMapper = derive2 { name="FloodMapper"; version="1.0"; sha256="09pr6324namqrwdr2impgqmdmsf34g9pq91091cg9b1031djgzyq"; depends=[magick raster rgdal sp]; }; FlowRegEnvCost = derive2 { name="FlowRegEnvCost"; version="0.1.1"; sha256="0lw4kv4z0s23jy11y53rxxh7zxa7vajxrcnjgxd74xxs64vjlj88"; depends=[zoo]; }; FlowScreen = derive2 { name="FlowScreen"; version="1.2.5"; sha256="1kslqvxm73s8fvhf6ahmxmjgs73b78lcbcf4af1cp7axksp4bv8v"; depends=[changepoint evir zyp]; }; @@ -1235,14 +1287,16 @@ in with self; { ForIT = derive2 { name="ForIT"; version="1.0"; sha256="0mi2cw09mbc54s8qwcwxin2na1gfyi60cdssy2ncynma7alq3733"; depends=[]; }; ForImp = derive2 { name="ForImp"; version="1.0.3"; sha256="0ai4i6q233sdsi8xilpbkxjqdf4pxw93clkdkhcxal6q43rnf7vd"; depends=[homals mvtnorm sampling]; }; ForeCA = derive2 { name="ForeCA"; version="0.2.4"; sha256="1i19lmhl1kgfnd7zipjr6xp5ir9rvjy13sbq321jaf8ya60bjdd9"; depends=[ifultools MASS reshape2 sapa]; }; - ForecastComb = derive2 { name="ForecastComb"; version="1.2"; sha256="1sx151a37aadvki3bvlya4g5mbd8ns9644n4mc6f6mhglikx5y2g"; depends=[forecast ggplot2 Matrix mtsdi psych quadprog quantreg]; }; + ForecastComb = derive2 { name="ForecastComb"; version="1.3.1"; sha256="07cbiv172mpkwvg6svhwgavlfy2144ir3y1l7w37wbd0ygs514id"; depends=[forecast ggplot2 Matrix mtsdi psych quadprog quantreg]; }; ForecastCombinations = derive2 { name="ForecastCombinations"; version="1.1"; sha256="07vzgm2jy992p1l9b8rsv2lbc8cbfzvql85n5ah4p4l3zjxdxgk9"; depends=[quadprog quantreg]; }; ForecastFramework = derive2 { name="ForecastFramework"; version="0.9.0"; sha256="131h9f148wn89znzsnym43amlvf4s7jzg4f2p7ld9ns7727sf56q"; depends=[abind dplyr lubridate magrittr R6 reshape2]; }; ForestTools = derive2 { name="ForestTools"; version="0.2.0"; sha256="0q9nk9n001bnz5hd8cxj6wmaf8c7g0kwfkpa0hk6ap42666rrrah"; depends=[APfun imager raster rgeos sp]; }; FormalSeries = derive2 { name="FormalSeries"; version="1.0"; sha256="09m4ifinasww0xfprs29xsrqhxxkw9zffb3919xnkkjkwp0nax4v"; depends=[]; }; Formula = derive2 { name="Formula"; version="1.2-3"; sha256="0wiqh8rr9d5ciy80wj8f5fnmiiw0ywanvvnhkwd622dx42dk848l"; depends=[]; }; ForwardSearch = derive2 { name="ForwardSearch"; version="1.0"; sha256="0yd47832piqxzjxgl7bc8pn0c8f7vbgsm9z6894rzyi615kjl70b"; depends=[robustbase]; }; - FourScores = derive2 { name="FourScores"; version="1.0"; sha256="0d21mrl9bzsvhljv7ymiyck508smp66w9qivrb2rp0p803h9yibm"; depends=[]; }; + FossilSim = derive2 { name="FossilSim"; version="2.0.0"; sha256="1kv737bpq4vii2q32jljdiv3dlcvj05xkxkd5s0d5961ypgvm04d"; depends=[ape TreeSim]; }; + FourScores = derive2 { name="FourScores"; version="1.5.1"; sha256="1la9d1hfcmi0zg58yl0a7nj36giagh0fwrc7wxyqdq0c7zf1hfzq"; depends=[]; }; + FourgameteP = derive2 { name="FourgameteP"; version="0.1.0"; sha256="15yn47737768fkjjv8ykc9lw7x58pq44k90d9d4c9hp20zw5f3by"; depends=[]; }; FrF2 = derive2 { name="FrF2"; version="1.7-2"; sha256="1qjgx7zbnabbs4zq7hn3j1i1xyy4yjwnz7pn25kz9s3szqr1fk66"; depends=[BsMD DoE_base igraph scatterplot3d sfsmisc]; }; FrF2_catlg128 = derive2 { name="FrF2.catlg128"; version="1.2-1"; sha256="0i4m5zb9dazpvmnp8wh3k51bm0vykh4gncnhdg71mfk4hzrfpdac"; depends=[FrF2]; }; FractalParameterEstimation = derive2 { name="FractalParameterEstimation"; version="1.1.1"; sha256="0l015v99hzmiyic0klvq71ljk9f8ipr57ki7x4cjyz1gam9f84p5"; depends=[]; }; @@ -1250,7 +1304,7 @@ in with self; { Frames2 = derive2 { name="Frames2"; version="0.2.1"; sha256="0xbz19v5r1h15p8mf94vacw04h3kvmm88ayy4b1aqxrd925n63mw"; depends=[MASS nnet sampling]; }; FreeSortR = derive2 { name="FreeSortR"; version="1.3"; sha256="1m6ahhixbbizzn09pz71zvinrdshn3j6gmy05jdxa9d932agqk0w"; depends=[ellipse smacof vegan]; }; FreqProf = derive2 { name="FreqProf"; version="0.0.1"; sha256="1yqn2435l2sghfcv5mma0rv9yqvpa69z8cqqsjlrlbih9gib82d4"; depends=[ggplot2 reshape2 shiny]; }; - FunChisq = derive2 { name="FunChisq"; version="2.4.5-1"; sha256="10472bclx40ha5nz15csyk3j3kwdzfb22wx64zc1s16s903w9jhw"; depends=[BH Rcpp]; }; + FunChisq = derive2 { name="FunChisq"; version="2.4.5-2"; sha256="1a5ladzpm62cap8gdz11kjlwyzkq84nx2xbnbjc36x2skzlqpcza"; depends=[BH Rcpp]; }; FunCluster = derive2 { name="FunCluster"; version="1.09"; sha256="0i73asn1w4s6ydf2ddn5wpr0mwbbxzgmaly1pslarzkx71wk03fz"; depends=[cluster Hmisc]; }; FuncMap = derive2 { name="FuncMap"; version="1.0.10"; sha256="0iaay6qz9a2s77xjfpp7wm37y7xwnvmlw6s5k5riccmqzc6dcjs7"; depends=[mvbutils]; }; Funclustering = derive2 { name="Funclustering"; version="1.0.1"; sha256="0i6g98mfgdyc9hdzvviynrgqhkzicp8y6s0scqy3ifgk9h1k79dw"; depends=[fda Rcpp RcppEigen]; }; @@ -1279,15 +1333,15 @@ in with self; { GANPA = derive2 { name="GANPA"; version="1.0"; sha256="0ia8djv46jm397nxjrm9yc5gacf1r4z0ckiliz57cbrqwh7z2wpa"; depends=[GANPAdata]; }; GANPAdata = derive2 { name="GANPAdata"; version="1.0"; sha256="0mhdadl7zgsacn59ym42magg3214k1xhabwn78fv7kgccszcgc86"; depends=[]; }; GAR = derive2 { name="GAR"; version="1.1"; sha256="12xgk87bndinx7ibaasn51a9fad3ymvpjmixa7l18pfy99l3pcll"; depends=[httr jsonlite]; }; - GAS = derive2 { name="GAS"; version="0.2.6"; sha256="18a3hagwfy0xa7abkwgf2pk5l2n0bxg4kr8y0m5iapkbc3gx5rvz"; depends=[MASS numDeriv Rcpp RcppArmadillo Rsolnp xts zoo]; }; + GAS = derive2 { name="GAS"; version="0.2.9"; sha256="1h588g4khqhc0laxdqmzjz4zilb2gww9xkm0p7d59k9b70k7wbcx"; depends=[cubature MASS numDeriv Rcpp RcppArmadillo Rsolnp xts zoo]; }; GAabbreviate = derive2 { name="GAabbreviate"; version="1.3"; sha256="0cq6bg3w0ji44rsz1p4j17fk0jg8rafbjixwi3fjdndc3yd874r5"; depends=[GA psych]; }; GAparsimony = derive2 { name="GAparsimony"; version="0.9.2"; sha256="0c8al4kw1fd9krninpxijg99lhfmlw4mf2623md2and25r6ixlld"; depends=[foreach iterators]; }; GB2 = derive2 { name="GB2"; version="2.1"; sha256="06rcck97pdm1rsb02cy0jd9fknv0mz5jwk364gsaahdk56ddk18a"; depends=[cubature hypergeo laeken numDeriv survey]; }; GBJ = derive2 { name="GBJ"; version="0.5.2"; sha256="1zfddk1gn1hh67x9n5zrav5gmmrfdbnf29cz72kd3g64z2f78fgw"; depends=[BH mvtnorm Rcpp SKAT]; }; GCAI_bias = derive2 { name="GCAI.bias"; version="1.0"; sha256="10092mwpmfbcga0n39a0i6g8xxch8xiwg15cckipw6yxjyx0sivc"; depends=[]; }; - GCD = derive2 { name="GCD"; version="4.0.2"; sha256="1gb3qhqa212vy85qscnfssvb4rk8fq5j6zs779jq9c6jzvlfv6wb"; depends=[]; }; + GCD = derive2 { name="GCD"; version="4.0.3"; sha256="0c1l1xz0jjjib5cqszq6rg3rh19441npjgy6xnvlrhddjyihhrs4"; depends=[]; }; GCPM = derive2 { name="GCPM"; version="1.2.2"; sha256="0k2ng78bk3bxpj6nz80j5cvjd56zjz328ga68vyyc3hvdjgpspqj"; depends=[Rcpp RcppProgress]; }; - GCalignR = derive2 { name="GCalignR"; version="1.0.1"; sha256="1p1zxf5s75ckyj7a61n43ix314p3b99knyg6z5d4sn5n417h2m42"; depends=[ggplot2 pbapply readr reshape2 stringr]; }; + GCalignR = derive2 { name="GCalignR"; version="1.0.2"; sha256="1x0as6mmapvn3a28c3qk3wd5gjkx17xgf9c7yb68wp3lj8pknsnm"; depends=[ggplot2 pbapply readr reshape2 stringr]; }; GD = derive2 { name="GD"; version="1.6"; sha256="1rlgr4z4ibz5m8m18mw11bqcbbvfjxw2mljg78jp0lb294zh1kbb"; depends=[BAMMtools ggplot2 reshape2]; }; GDAdata = derive2 { name="GDAdata"; version="0.93"; sha256="13ks97i289rc4i7gpqrifwbj0m9rx8csjhnfg8mad10qmjwz7p8b"; depends=[]; }; GDAtools = derive2 { name="GDAtools"; version="1.4"; sha256="1i5g7gzl3fkhwxqizqwrn8098s5lrr0mk17wmpyf92s1sy315cpv"; depends=[FactoMineR nleqslv nnet]; }; @@ -1295,7 +1349,8 @@ in with self; { GDINA = derive2 { name="GDINA"; version="2.1.15"; sha256="1cndib7frd40199l8zijspnidwig9jvhhk3s5dbbhlgxswq6idsz"; depends=[alabama ggplot2 MASS nloptr numDeriv Rcpp RcppArmadillo Rsolnp shiny shinydashboard]; }; GEEaSPU = derive2 { name="GEEaSPU"; version="1.0.2"; sha256="02pwjqd94kranc1f69bx9rzk27kchavhvhl9fygjhrr40nwq3pbg"; depends=[gee Rcpp RcppArmadillo]; }; GEEmediate = derive2 { name="GEEmediate"; version="1.1.1"; sha256="1akgl4j38x4qf3z9d6z7cgjd7x9f0k3lrzyrzgykqhrzmbh68z2m"; depends=[gee]; }; - GENEAread = derive2 { name="GENEAread"; version="2.0.2"; sha256="0nkza3srfa67mmxnvhhq2wg3zm7ij73r7rpgssjaaijcxqm7qyvl"; depends=[bitops GGIR mmap]; }; + GENEAclassify = derive2 { name="GENEAclassify"; version="1.4.14"; sha256="0z2lf0pgkwhrqq6a8gpjga3k3kf1iv8zkwma3g6kghqp1sjr9yr7"; depends=[changepoint GENEAread MASS rpart signal]; }; + GENEAread = derive2 { name="GENEAread"; version="2.0.5"; sha256="0xm4cf0a5nfdj8qxb9ylzgk2dals9rwggk2w6aaryn8r8v4fl9vp"; depends=[bitops GGIR mmap]; }; GENLIB = derive2 { name="GENLIB"; version="1.0.6"; sha256="0xyq3ggi814vi3x5kxffhi7ygvzcfj3pg0kfi7whcjpi3pjg05h8"; depends=[bootstrap doParallel foreach kinship2 lattice Matrix quadprog Rcpp]; }; GEOmap = derive2 { name="GEOmap"; version="2.4-4"; sha256="0wk2v0fwcwcm59k711fg829h2w58wkd36im4mg974iai6mqif7qh"; depends=[fields MBA RPMG splancs]; }; GERGM = derive2 { name="GERGM"; version="0.13.0"; sha256="1h3fzkgc553bvxhcmvmlgk9sdais186h4gs1qagdihwpwn8ymbjk"; depends=[BH coda ggplot2 igraph matrixcalc plyr Rcpp RcppArmadillo RcppParallel scales slackr stringr vegan]; }; @@ -1306,16 +1361,17 @@ in with self; { GEint = derive2 { name="GEint"; version="0.1.4"; sha256="0xwp8hqds4lf6nb8hcbvsj2000w7f90bi62b1v3iry0y6cbpwbjg"; depends=[bindata geepack mvtnorm nleqslv pracma rje speedglm]; }; GExMap = derive2 { name="GExMap"; version="1.1.3"; sha256="1a6i2z9ndgia4v96nkr77cjqnbgxigqbqlibg82gwa0a6pl7r7nz"; depends=[Biobase multtest]; }; GFA = derive2 { name="GFA"; version="1.0.3"; sha256="10sivsqxliwcrp0ay3n2my28zki6f8vpv8i9lbld8qinx1iv2mq3"; depends=[]; }; - GFD = derive2 { name="GFD"; version="0.2.5"; sha256="14bhqk5hi9w2078nn382ksgw37bx5r1jadizcrwbisglccxa0ncd"; depends=[magic MASS Matrix plotrix plyr]; }; + GFD = derive2 { name="GFD"; version="0.2.6"; sha256="1z98j6nvaa4vrh840q1iy5r0h9ns4xbrk3qfkq51l2kmbrck8r7a"; depends=[magic MASS Matrix plotrix plyr]; }; + GFE = derive2 { name="GFE"; version="0.1.0"; sha256="0ywrg23z13kp8ggw4wbm4jvr2rvb6kra7ma0mgfj8xzkrxs6vi6m"; depends=[data_table dplyr TeachingSampling]; }; GFGM_copula = derive2 { name="GFGM.copula"; version="1.0.3"; sha256="0pqx5fr039izhwi2kdzq9v6nlviyjclzddd092g8mkadj36diwk5"; depends=[cmprsk compound_Cox joint_Cox]; }; GFORCE = derive2 { name="GFORCE"; version="0.1.2"; sha256="1bxc0id3vivva4d62h468vv4zrvjgzh91mlm97ga9qnlhd1r20wr"; depends=[lpSolve MASS]; }; GGEBiplotGUI = derive2 { name="GGEBiplotGUI"; version="1.0-9"; sha256="0nd0ky3m1avy82z48g7hcysq0y0agxjxdn0g624dkm2w99avxw3j"; depends=[rgl tkrplot]; }; GGEBiplots = derive2 { name="GGEBiplots"; version="0.1.1"; sha256="1xnxaylikjd378flw3rqw36z27b2limkmyad97zhf1cbva317d1b"; depends=[gge GGEBiplotGUI ggforce ggplot2 scales]; }; - GGIR = derive2 { name="GGIR"; version="1.5-23"; sha256="06bz8zlw3b2m1lb884jcbh935wxjri8hsa25aw4x7h3n70sgza25"; depends=[data_table Rcpp]; }; + GGIR = derive2 { name="GGIR"; version="1.6-7"; sha256="1kwrynyb0r6y9vdsdv1s75pg1v2q4lj10dvvwbdk4sy3m8z7dhsv"; depends=[data_table Rcpp]; }; GGMM = derive2 { name="GGMM"; version="1.0.0"; sha256="18haggjagp0bwy451ghz18nbjgp8zdw1m9iavjj38s57igs611n4"; depends=[equSA huge mvtnorm]; }; GGMridge = derive2 { name="GGMridge"; version="1.1"; sha256="0zbfvvp7l836m118m8nmdvw1w7xq6d3b7qirskjsq1dkk23j41hs"; depends=[MASS mvtnorm]; }; GGMselect = derive2 { name="GGMselect"; version="0.1-12.1"; sha256="0nrkbai9jps54ldx3cvwd4x4wingfj73najwx4bv98z8zxpbnky5"; depends=[gtools lars mvtnorm]; }; - GGUM = derive2 { name="GGUM"; version="0.3.2"; sha256="0kkdg8d4ib862v6y9xjczh4v52fzzcv5c31hdf44jw4lc7npwc82"; depends=[abind psych Rdpack viridis xlsx]; }; + GGUM = derive2 { name="GGUM"; version="0.3.3"; sha256="1ndqm4wal2xp9sdhj0aj8828ygm2g4fx23cpnlmg3vjz4m2mjc1r"; depends=[abind psych Rdpack viridis xlsx]; }; GGally = derive2 { name="GGally"; version="1.4.0"; sha256="1zjmcc5bzagvy7c5cmdcl39xmx07fwi98yrj4i05w7y40kqcsiws"; depends=[ggplot2 gtable plyr progress RColorBrewer reshape rlang]; }; GHQp = derive2 { name="GHQp"; version="1.0"; sha256="0qpcpwv7rz67qhz1p5k2im02jvs7l8z9sa6ypz13hig5fzm8j9bp"; depends=[statmod]; }; GHap = derive2 { name="GHap"; version="1.2.2"; sha256="1qwv4llcixklr9d6lq4ljzbs8al80xnvqkcajnh8dbf3axmlmr5b"; depends=[bigmemory lme4 Matrix]; }; @@ -1327,7 +1383,7 @@ in with self; { GLDreg = derive2 { name="GLDreg"; version="1.0.7"; sha256="1wjrr4x1k0fz8nx9idb4ysamldypriiypj96b5v028lx38jwsk3l"; depends=[ddst GLDEX]; }; GLIDE = derive2 { name="GLIDE"; version="1.0.1"; sha256="02pmn0ydrmblgchz189avlrz3zaz0qfhy75d945yphpmvjf9f9m5"; depends=[doParallel foreach MASS]; }; GLMMRR = derive2 { name="GLMMRR"; version="0.2.0"; sha256="0s3jfh720acfmbadilq2c6gql3yifsbijpmw1jkzbsdc87pqi1db"; depends=[lattice lme4]; }; - GLMMadaptive = derive2 { name="GLMMadaptive"; version="0.2-0"; sha256="06ppv7clwqd817aas9dkq1ry8vz9rbss5rdgwzc65y715r0y906k"; depends=[MASS nlme]; }; + GLMMadaptive = derive2 { name="GLMMadaptive"; version="0.3-0"; sha256="0447j35a5nq3v6fkcynmrxvxqlry51b6fx05dwrdncbnq3sm5f6j"; depends=[MASS nlme]; }; GLMaSPU = derive2 { name="GLMaSPU"; version="1.0"; sha256="0zx2bza5v5cfp9v7hf42s57522b6prawcwl77aa3kvjcnb0ish6g"; depends=[MASS mnormt mvtnorm Rcpp RcppArmadillo]; }; GLMsData = derive2 { name="GLMsData"; version="1.0.0"; sha256="12q41zxniblzys20vjrf5skj8cbzlwb92mwk6jvnyd86lc70bsh1"; depends=[]; }; GLSME = derive2 { name="GLSME"; version="1.0.4"; sha256="1bh56dv4czl89dm9b6syfpsbds4wni03d5vamvjbp6wblhysxnpm"; depends=[corpcor mvtnorm]; }; @@ -1336,47 +1392,47 @@ in with self; { GMDH = derive2 { name="GMDH"; version="1.6"; sha256="093glyz73246m5f2xb2xgbgi80haj4fanmr325byr99dnf4x35yn"; depends=[MASS]; }; GMDH2 = derive2 { name="GMDH2"; version="1.4"; sha256="13vbzqxmqvp39rbxw41nqfrmk0w6w8qc9nzgfbfpc07h3gcwva41"; depends=[e1071 glmnet magrittr MASS nnet plotly randomForest xtable]; }; GMMBoost = derive2 { name="GMMBoost"; version="1.1.2"; sha256="01q165vkdiv4qh96lha0g2g94jpnzdclbby6q43ghh9j1yrd4qzj"; depends=[magic minqa]; }; - GMSE = derive2 { name="GMSE"; version="0.4.0.4"; sha256="14m4rygb24k4prkiqsqv3w5v0gv98pqpqdmgimk5wi33npxy2c2b"; depends=[shiny shinydashboard shinyjs]; }; - GNE = derive2 { name="GNE"; version="0.99-1"; sha256="1avsl54xdlqq8pw16g84igcwms7if7lvdblqvfc2cn3sk8qi5xdv"; depends=[alabama BB nleqslv SQUAREM]; }; + GMSE = derive2 { name="GMSE"; version="0.4.0.7"; sha256="00fws183mndi2zdfkcsdki3nbd983y9g35fgxkacjck9mpn48an3"; depends=[shiny shinydashboard shinyjs]; }; + GNAR = derive2 { name="GNAR"; version="0.2.7"; sha256="1rxx13a3yzl8g4024d3vwxf86ssjjsa3dh6bqzxqyv0fxd85aiaj"; depends=[igraph]; }; + GNE = derive2 { name="GNE"; version="0.99-2"; sha256="16mivsa4r8d2cg5qsh5rpg2244f74zk2ln3vbys7ivjgnjpjn7z8"; depends=[alabama BB nleqslv SQUAREM]; }; GOGANPA = derive2 { name="GOGANPA"; version="1.0"; sha256="1xbir21zvr5hv2y6nndzpsrpmnr7glrc7y6xgcyb856wx46ajan9"; depends=[GANPA WGCNA]; }; GORCure = derive2 { name="GORCure"; version="2.0"; sha256="1hazin0q74hf16azxa5h08kfj7g1079q77n2fn4fahpfxb8hmvwm"; depends=[ICsurv MASS pracma survival]; }; GOplot = derive2 { name="GOplot"; version="1.0.2"; sha256="1y8dv0kbzpr9za91njw0x233vx5d13vqml9hmpddcyi9s6va5nix"; depends=[ggdendro ggplot2 gridExtra RColorBrewer]; }; GPArotation = derive2 { name="GPArotation"; version="2014.11-1"; sha256="15jh5qqqwx47ara6glilzha87rnih0hs5fsz0jjqwv6wr1gw26rm"; depends=[]; }; GPB = derive2 { name="GPB"; version="1.0"; sha256="18cdgz00j0j1rchzn2l253rii3b0iv9ipnh5sk3yvmwrqiabmrf8"; depends=[]; }; - GPCMlasso = derive2 { name="GPCMlasso"; version="0.1-1"; sha256="1qlbs9xxdn7q90afh5zc6fgp213fxyh3xmmhz5dm6azbwx92x3la"; depends=[car caret cubature ltm mirt mvtnorm Rcpp RcppArmadillo statmod TeachingDemos wordcloud]; }; + GPCMlasso = derive2 { name="GPCMlasso"; version="0.1-2"; sha256="03xa68aydlgah7y922k9i07qwwz0ygzidrc3xl0iylcwbwcanifd"; depends=[caret cubature ltm mirt mvtnorm Rcpp RcppArmadillo statmod TeachingDemos]; }; GPCSIV = derive2 { name="GPCSIV"; version="0.1.0"; sha256="118l792mwd54xsi3g8afg3vc6wds8j6fyaz3mwmq04mlcyblym4l"; depends=[scatterplot3d sqldf]; }; GPFDA = derive2 { name="GPFDA"; version="2.2"; sha256="1xqk03g8b8hi1vdqh6a9wml8ln0ad6lmy14z8k8c4wdc5kbzdr0b"; depends=[fda fda_usc MASS spam]; }; GPGame = derive2 { name="GPGame"; version="1.1.0"; sha256="00qiqd7p84k22wbmlmj8a81fy5m5rl6afhj2q61j0akicnbzjfw9"; depends=[DiceDesign DiceKriging GPareto KrigInv MASS mnormt mvtnorm Rcpp]; }; GPLTR = derive2 { name="GPLTR"; version="1.2"; sha256="0b4s090jlp2qpqqr0b1ifwyf2fal156y7vg9mjkw53y623ms5pix"; depends=[rpart]; }; - GPM = derive2 { name="GPM"; version="1.0.1"; sha256="0sqr2s9wcqh2giyslvkgprn22b4aigalx2dd9y57lz7kfljvril7"; depends=[lattice lhs randtoolbox]; }; - GPPFourier = derive2 { name="GPPFourier"; version="2.1"; sha256="1wlzpiqlg5zx3rv29l1ql3apcaykvk72zc0anwxr152qlk910l2q"; depends=[mFilter Tides]; }; + GPM = derive2 { name="GPM"; version="1.0.2"; sha256="0b7431fapg09xad8rc3b9vwrs55ja24yv12kfxb2y65gij940ms7"; depends=[lattice lhs randtoolbox]; }; + GPRMortality = derive2 { name="GPRMortality"; version="0.1.0"; sha256="0k5pfyl7r5vsac927aqx19lz93vyk5l3ydqkazn2hwwaw1lh2wav"; depends=[rstan]; }; GPareto = derive2 { name="GPareto"; version="1.1.1"; sha256="100r7v7vdkd8i8asb8fnz86rgmkd9kd5bnrc7kdzndfg6jsyycrg"; depends=[DiceDesign DiceKriging emoa KrigInv ks MASS pbivnorm pso randtoolbox Rcpp rgenoud rgl]; }; GPfit = derive2 { name="GPfit"; version="1.0-0"; sha256="0g0g343ncqsqh88qq9qrf4xv5n3sa980kqbvklcx534dmn6a7n2i"; depends=[lattice lhs]; }; - GPoM = derive2 { name="GPoM"; version="1.1"; sha256="0n1fnmwiygispihqgcx762wkvp28pnm8kcwlx9vxhpafswsp112q"; depends=[deSolve rgl]; }; - GPrank = derive2 { name="GPrank"; version="0.1.3"; sha256="118v08kyp0s8j24cmfyyzj8klgd4g3jqi1x5l76w1iznnlpyd6kf"; depends=[gptk matrixStats RColorBrewer tigreBrowserWriter]; }; + GPoM = derive2 { name="GPoM"; version="1.2"; sha256="1hhwdpish8j3j9y5q6r5pdsl1kpbwp1hjhcq24iiz4lfssib4k9f"; depends=[deSolve rgl]; }; + GPrank = derive2 { name="GPrank"; version="0.1.4"; sha256="06j5fk427jkp5lphqlx48vfp4fagnxxnv4iyjcha8nvkswcblwgy"; depends=[gptk matrixStats RColorBrewer tigreBrowserWriter]; }; GPvam = derive2 { name="GPvam"; version="3.0-5"; sha256="0inhhx5ll4ybkwp71ijigxlyxsa0rdyxb38kgfgxb588dsk4scjz"; depends=[Matrix numDeriv Rcpp RcppArmadillo]; }; GRANBase = derive2 { name="GRANBase"; version="2.5.0"; sha256="1sc7f47dnrwww89v4n8y41zvc9z8i8lv7qgya6nwf98vh9b6ifmi"; depends=[covr dplyr GRANCore htmlTable jsonlite markdown RCurl sendmailR stringi switchr]; }; GRANCore = derive2 { name="GRANCore"; version="0.2.2"; sha256="0f4w5nyqnfq20apqrc7harg4capxrr648wfbgghdg18j3gh3spdc"; depends=[switchr]; }; GRAPE = derive2 { name="GRAPE"; version="0.1.0"; sha256="0kcyz8x6yzq83hcwdlx7yw5jpww819f9d1hax19vn31ccq71xkyw"; depends=[]; }; GRCdata = derive2 { name="GRCdata"; version="1.0"; sha256="0nshii6kfvffncgcrmm7wvniq94j9djj84jikcb6ck49viikkrky"; depends=[cubature nloptr]; }; - GREP2 = derive2 { name="GREP2"; version="1.0.0"; sha256="1nzy8v4xjvaw5zsmbfxljfmy78njd3mw7rkgh6k6c0mf30mrb51i"; depends=[AnnotationDbi Biobase EnsDb_Hsapiens_v86 EnsDb_Mmusculus_v79 EnsDb_Rnorvegicus_v79 GenomicFeatures GEOquery org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db RCurl rentrez tximport XML]; }; - GROAN = derive2 { name="GROAN"; version="1.1.0"; sha256="06xcbdcg3rmb9939d9ansy75jn0axy0c36rmgjhcji8gf959kmyz"; depends=[plyr rrBLUP]; }; + GREP2 = derive2 { name="GREP2"; version="1.0.1"; sha256="0sr7r6c4xnhwdq4j1v3frzc063hhghinx8dl952li5cy8rqk8ga5"; depends=[AnnotationDbi Biobase EnsDb_Hsapiens_v86 EnsDb_Mmusculus_v79 EnsDb_Rnorvegicus_v79 GenomicFeatures GEOquery org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db RCurl rentrez tximport XML]; }; + GROAN = derive2 { name="GROAN"; version="1.2.0"; sha256="14n3k1wwz5pn82wcj00cdns4bp699f58k1nj8hp8jn0q7xr2sgv5"; depends=[plyr rrBLUP]; }; GRS_test = derive2 { name="GRS.test"; version="1.1"; sha256="1ap9453rj5zan6c3ix7jb1qxhxh42bfv295dgqbgjpdygjdlbm6n"; depends=[]; }; GRTo = derive2 { name="GRTo"; version="1.3"; sha256="1xkcx2agvrpfnmplgaqx70vz303v8rhwnxdyr4hmdlf4h92lbv8i"; depends=[bootstrap]; }; GSA = derive2 { name="GSA"; version="1.03"; sha256="1h1sbpn1rrdh44w4fx2avc7x24ba40mvpd8b2x5wfrc7a294zf6z"; depends=[]; }; GSAQ = derive2 { name="GSAQ"; version="1.0"; sha256="1p1rab2dlh4h9bfg464nhx708p7kc4q01ifccdh5756lq1qh2kzv"; depends=[]; }; GSAfisherCombined = derive2 { name="GSAfisherCombined"; version="1.0"; sha256="1xhq5nc3kbz3ml9qkdxm6m0c65fybabfhgqlwii2105jl0ll7qy5"; depends=[]; }; GSAgm = derive2 { name="GSAgm"; version="1.0"; sha256="18bhk67rpss6gg1ncaj0nrz0wbfxv7kvy1cxria083vi60z0vwbb"; depends=[edgeR survival]; }; - GSCAD = derive2 { name="GSCAD"; version="0.1.0"; sha256="0a5smd1prfi6n58ghhz5v81p88v3cnmk2v6r0nn9gy7sa1r2z8xc"; depends=[fields Matrix Rcpp RcppArmadillo]; }; GSE = derive2 { name="GSE"; version="4.1"; sha256="00pvpramk7n3195i3vkmp982igyc1b0xzjqs7xdsvzsnfv7kpcbh"; depends=[cellWise ggplot2 MASS Rcpp RcppArmadillo robustbase rrcov]; }; - GSED = derive2 { name="GSED"; version="1.7"; sha256="1w8kim7qfrx28bx4l4qkfghwysmyhm7xa0pjagvrh5ar35m4ga67"; depends=[memoise rootSolve survival]; }; + GSED = derive2 { name="GSED"; version="1.10"; sha256="1i3xrf01620m7vwa9kpzl620kxh60yhsbxyshna4kkv6d68i9fzy"; depends=[memoise rootSolve survival]; }; GSIF = derive2 { name="GSIF"; version="0.5-4"; sha256="1vh3dffi5hakk32rwaabw9k34wigd0n5bhzcyqhadl6fxjsaz6b6"; depends=[aqp dismo gstat plotKML plyr raster rgdal RSAGA scales sp]; }; GSM = derive2 { name="GSM"; version="1.3.2"; sha256="04xjs9w4gaszwzxmsr7657ry2ywa9pvpwpczpvinxi8vpj347jbb"; depends=[gtools]; }; GSMX = derive2 { name="GSMX"; version="1.3"; sha256="1n1d7rixj14ari46snsmi48qfmy00ihmzvayk3hkrp2d2d0xi2gh"; depends=[MASS]; }; - GSODR = derive2 { name="GSODR"; version="1.2.1"; sha256="0nmr5pmwxmriaf16r39hs85g2qfzz3k176klgvlmp4shg4ln2p64"; depends=[curl dplyr magrittr purrr R_utils readr rlang tibble]; }; + GSODR = derive2 { name="GSODR"; version="1.2.3"; sha256="12fa4grgar7b8pxr1jjqrjbzmil0dwn04mq5dawj86v6g65xnky9"; depends=[curl dplyr magrittr purrr R_utils readr rlang tibble]; }; GSSE = derive2 { name="GSSE"; version="0.1"; sha256="034mmxa6kjq5kgikhb5q75viagz5ck9irrjbxm26zq9099qxm13b"; depends=[Iso zoo]; }; GSparO = derive2 { name="GSparO"; version="1.0"; sha256="0xna2crxqwy8fj0s79rxbdcaz9x912rp1vdwqv1557fsnmfv2yf0"; depends=[ggplot2 ThreeWay]; }; - GUIDE = derive2 { name="GUIDE"; version="1.2.3.1"; sha256="02chn2mzh6smmiv8rp00cq5rff18bqszazbk8svmvvlgn0a25pj4"; depends=[rpanel tkrplot]; }; + GUIDE = derive2 { name="GUIDE"; version="1.2.7"; sha256="0klaczmn3jnlzyh45yaqlc897irjfk467f4w03awmflaiwan3h6v"; depends=[rpanel tkrplot]; }; GUILDS = derive2 { name="GUILDS"; version="1.3"; sha256="0zl6x0vn93ybps63fqazvd93f2zwdq0rqqrp7d6n5rnamx99mm8d"; depends=[pracma Rcpp]; }; GUIProfiler = derive2 { name="GUIProfiler"; version="2.0.1"; sha256="10m4d7f2rhw6cmkrnw3jh4iqlkfphf4v7mpfwzw17laq0ncmsx5r"; depends=[graph MASS Nozzle_R1 proftools Rgraphviz rstudioapi]; }; GUIgems = derive2 { name="GUIgems"; version="0.1"; sha256="0lmx8hw0496vk437p32l933cdb4vpi94f4kz58x20jj07c20maz6"; depends=[ggplot2 igraph MASS msm plyr rpanel stringr]; }; @@ -1384,12 +1440,12 @@ in with self; { GUniFrac = derive2 { name="GUniFrac"; version="1.1"; sha256="1vgij7c9b0afl5wzwcn0pjdvn8gqz2jxk5q0gchd9zk1qd10a1vl"; depends=[ape matrixStats vegan]; }; GWAF = derive2 { name="GWAF"; version="2.2"; sha256="11lk1dy24y1d0biihy2aypdvlx569lw1pfjs51m54rhgpwzkw6yd"; depends=[coxme geepack lme4]; }; GWASExactHW = derive2 { name="GWASExactHW"; version="1.01"; sha256="19qmk8h7kxmn9kzw0x4xns5p3qqz27xkqq4q6zmh4jzizd0fsl78"; depends=[]; }; - GWASinlps = derive2 { name="GWASinlps"; version="1.1"; sha256="1041yb5zn27a9srylmawj2kbkcsjz65x0apa413wyb32pz73l6ni"; depends=[horseshoe mombf]; }; + GWASinlps = derive2 { name="GWASinlps"; version="1.2"; sha256="036lv8f58kz6qdwaviyk1q1qsgcj9cimipq1cjrfpn8snkn7s1gh"; depends=[horseshoe mombf speedglm]; }; GWG = derive2 { name="GWG"; version="1.0"; sha256="1va0cd229dhhi1lmrkpwapcm96hrdmxilrmba02xnl7ikhisw0my"; depends=[]; }; GWLelast = derive2 { name="GWLelast"; version="1.2.1"; sha256="1g6xmw93jl9cv3c7p76wk3lq8qhqxgjhmn1cgiyyy5jbf14gbasv"; depends=[doParallel foreach geosphere glmnet sp spgwr]; }; GWRM = derive2 { name="GWRM"; version="2.1.0.3"; sha256="16ahlf1pbcpgha50a7ml2c336by50r287kihwshiazshifi5p3n3"; depends=[doParallel foreach]; }; GWSDAT = derive2 { name="GWSDAT"; version="3.0.1"; sha256="1v93fbbpmbcigi1m9vyzrgcbnrrpgh7h963vicwy9ilzc06vhm68"; depends=[deldir digest geometry Kendall lattice MASS Matrix officer readxl rhandsontable sf shiny shinycssloaders shinydashboard shinyjs sm sp splancs zoo]; }; - GWmodel = derive2 { name="GWmodel"; version="2.0-5"; sha256="1v0a2fxs1nfm84vrggj1zmbij6kqzc5mgmqlvrh80hj3w87zpiry"; depends=[maptools Rcpp RcppArmadillo robustbase sp spdep]; }; + GWmodel = derive2 { name="GWmodel"; version="2.0-6"; sha256="04im9va0imj8wsl5fzjw7jx7xxvwdr71wqj2m5ar2x3c1k91k2na"; depends=[maptools Rcpp RcppArmadillo robustbase sp spacetime spdep]; }; GWsignif = derive2 { name="GWsignif"; version="1.2"; sha256="0bss5s3ijnlckz44p7jj49bn2r8nwqckpzwzcv0vci915q8jfsj2"; depends=[]; }; GaDiFPT = derive2 { name="GaDiFPT"; version="1.0"; sha256="15fnj1w30h0zdj032f3js0bbb1qlyk4b54a4aclykwzicqdgalkg"; depends=[]; }; GameTheory = derive2 { name="GameTheory"; version="2.7"; sha256="0vb7sjia5s58gw9zpkzddps8knxvbrz7fbi3m6digl8bf5vwhxxw"; depends=[combinat gtools ineq kappalab lpSolveAPI]; }; @@ -1398,7 +1454,7 @@ in with self; { GauPro = derive2 { name="GauPro"; version="0.2.2"; sha256="127agnhqbbavcf7sx0zq1c8ldh3w1d1iz5bpd1ixxkyaapmiq4qy"; depends=[lbfgs R6 Rcpp RcppArmadillo]; }; GeDS = derive2 { name="GeDS"; version="0.1.3"; sha256="1ddq4hnyl3m3s4cchccxiqphi742ljcm86zqpa01a5nrjbnr87x6"; depends=[Matrix Rcpp Rmpfr]; }; GeNetIt = derive2 { name="GeNetIt"; version="0.1-1"; sha256="1xjz22m4yn642m0bqa33w4m2rygpxjwg43c54lw168jck9zzgv1f"; depends=[nlme raster rgeos sp spatialEco spdep]; }; - GenAlgo = derive2 { name="GenAlgo"; version="2.1.4"; sha256="1mgdvzc5dd7d1wlk8c7d8gd9b2di16mjmyd2i3am05jfw3q26ahv"; depends=[ClassDiscovery MASS oompaBase]; }; + GenAlgo = derive2 { name="GenAlgo"; version="2.1.5"; sha256="0d3y9kc2njsbzdngv67d4qrdsnn7nsxph5acc09vmwxpv1cyhxiw"; depends=[ClassDiscovery MASS oompaBase]; }; GenBinomApps = derive2 { name="GenBinomApps"; version="1.0-2"; sha256="1ps1rq8cjlwh658mysdh3xbn5fihanzcwxb38xvg4031vnwv80in"; depends=[]; }; GenForImp = derive2 { name="GenForImp"; version="1.0"; sha256="1wcvi52fclcm6kknbjh4r9bpkc2rg8nk6cddnf5j8zqbvrwf4k5x"; depends=[mvtnorm sn]; }; GenKern = derive2 { name="GenKern"; version="1.2-60"; sha256="12qmd9ydizl7h178ndn25i4xscjnrssl5k7bifwv94m0wrgj4x6c"; depends=[KernSmooth]; }; @@ -1416,6 +1472,7 @@ in with self; { GeneticSubsetter = derive2 { name="GeneticSubsetter"; version="0.8"; sha256="0bd4snv3dwabc7mknmd2rjmffj67xq535x0bycajhd83d1jhjars"; depends=[]; }; GenomicMating = derive2 { name="GenomicMating"; version="2.0"; sha256="02v1pkarmardf7g8hf2n4jj4cq4707g5lcc7gnwsiyyh7pknd1y6"; depends=[dplyr emoa kohonen LowRankQP magrittr plotly qtl Rcpp RcppArmadillo scatterplot3d SOMbrero]; }; GenomicTools = derive2 { name="GenomicTools"; version="0.2.6"; sha256="19illcfcm34vr90kh4cbdwf7k8hy700dlzylsaicv3h4xi7iydgs"; depends=[circlize data_table gMWT Rcpp RcppArmadillo snpStats stringr]; }; + GenomicTools_fileHandler = derive2 { name="GenomicTools.fileHandler"; version="0.1.2"; sha256="1snv2z95v7lyvzpssjsjpy4163k6imfjbb0svm8icsb85mpyj7af"; depends=[data_table snpStats]; }; GeoBoxplot = derive2 { name="GeoBoxplot"; version="1.0"; sha256="164dh49ac3fx38fdglv32lmz92ca8jdd98cbhz6mxsk8r0jcladw"; depends=[]; }; GeoDE = derive2 { name="GeoDE"; version="1.0"; sha256="0wawkzj0344pprm8g884d7by8v74iw96b109rgm7anal48fl30im"; depends=[MASS Matrix]; }; GeoGenetix = derive2 { name="GeoGenetix"; version="0.0.2"; sha256="0rrc8rdf6whpd830s2g9ybz82jcd0il9kkfrjh3xza3b86fasdvg"; depends=[RandomFields]; }; @@ -1424,24 +1481,26 @@ in with self; { GeoRange = derive2 { name="GeoRange"; version="0.1.0"; sha256="0krj9570wkhdvpaqkq3nf0maglqd44mpwn4v1bymvgpk1i1wf5p3"; depends=[moments proj4 raster sp velociraptr]; }; GeomComb = derive2 { name="GeomComb"; version="1.0"; sha256="05xb6m2ciszxd13yhqdkildh9nsq19ss8885ngj6ynvbchqkii7r"; depends=[forecast ForecastCombinations ggplot2 Matrix mtsdi psych]; }; GerminaR = derive2 { name="GerminaR"; version="1.2"; sha256="10x22xl3r93i5mc6w7m5mqm3z386dsffwrb8h9c1bznrnynnsy63"; depends=[agricolae assertthat dplyr DT ggplot2 gsheet gtools magrittr readxl shiny shinydashboard tibble tidyr]; }; - GetDFPData = derive2 { name="GetDFPData"; version="0.7"; sha256="0c8cdx0hgcnrsppmq7vk70ivhczlb4blqfghqb9rni295r3hzd47"; depends=[curl dplyr readr reshape2 stringr tibble xlsx XML]; }; - GetHFData = derive2 { name="GetHFData"; version="1.5"; sha256="1lm2k37y86fn45hhvyswj60dql0m33kia0wirs3zc981s4nsxp0i"; depends=[curl dplyr lubridate RCurl readr stringr]; }; + GetDFPData = derive2 { name="GetDFPData"; version="1.2"; sha256="1v87xln890rvgklylziarqp3d4qwkppa9m54v2n9a6cbrfs4v3v9"; depends=[curl dplyr readr reshape2 stringr tibble xlsx XML]; }; + GetHFData = derive2 { name="GetHFData"; version="1.6"; sha256="1yhj97ag817jd2qzfbk363vmy4qpv1p6343krm3z0c9wjp2i97n5"; depends=[curl dplyr lubridate RCurl readr stringr]; }; GetITRData = derive2 { name="GetITRData"; version="0.7"; sha256="0cmqbncd5bjxgb1r9yvdv2hkx4qdmnpn2a62bgndnaya1yk5050l"; depends=[curl dplyr readr reshape2 stringr tibble xlsx XML]; }; - GetLattesData = derive2 { name="GetLattesData"; version="0.9"; sha256="1rqhs8039m3ar76nail7gavw6678zs20r9dg98rp5igqx5jjys73"; depends=[curl dplyr readr stringdist stringr XML]; }; + GetLattesData = derive2 { name="GetLattesData"; version="1.2"; sha256="0mwbyb3wk2l4nrzx4n6gbx4h4a1fz7p8kmysbihysdlz8brnr0av"; depends=[curl dplyr readr stringdist stringr XML]; }; GetR = derive2 { name="GetR"; version="0.1"; sha256="1b2wirhz4nhvmf863czwb8z8b42ilsyjjrg9rc4nd9b7nz50bmjg"; depends=[party]; }; GetTDData = derive2 { name="GetTDData"; version="1.3.1"; sha256="1a8f22nxs85g2zznh1ma37lmycypg8f7d5kdhyb5vrirvrpi5p05"; depends=[bizdays curl RCurl readxl stringi stringr tidyr XML]; }; GetoptLong = derive2 { name="GetoptLong"; version="0.1.7"; sha256="1fl3w2n602ldybc5qj7qw4xmzzb804bsjkqwf6dswzj0vf0qiadr"; depends=[GlobalOptions rjson]; }; GiNA = derive2 { name="GiNA"; version="1.0.1"; sha256="0his7wsgnggyv9526blxzxa1ni8hwq2ws64wkmha45nvvnm3dsiw"; depends=[doParallel EBImage foreach png]; }; GiRaF = derive2 { name="GiRaF"; version="1.0"; sha256="02356cq0g6v5m72fy5z83bw3nsb7kpc9sy7sykk97735n928z92n"; depends=[BH Rcpp RcppArmadillo]; }; GibbsACOV = derive2 { name="GibbsACOV"; version="1.1"; sha256="1ikcdsf72sn1zgk527zmxw3zjhx0yvkal6dv001cgkv202842kll"; depends=[MASS]; }; + Gifi = derive2 { name="Gifi"; version="0.3-8"; sha256="04kprdfh74gyc5p8x6ycgv2m6gm47imhf3v4vlxgqj3lmjm2vxp0"; depends=[colorspace]; }; GillespieSSA = derive2 { name="GillespieSSA"; version="0.5-4"; sha256="0bs16g8vm9yrv74g94lj8fdfmf1rjj0f04lcnaya7gyak3jhk36q"; depends=[]; }; GiniWegNeg = derive2 { name="GiniWegNeg"; version="1.0.1"; sha256="1wqwjalsyp55si839cil6na3khigm0mwn6qkg0kjylq10pabfk2a"; depends=[]; }; Giza = derive2 { name="Giza"; version="1.0"; sha256="13nkm8mk1v7s85kmp6psvnr1v97vi0gid8rsqyq3x6046pyl5z6v"; depends=[lattice reshape]; }; GlobalDeviance = derive2 { name="GlobalDeviance"; version="0.4"; sha256="0s318arq2kmn8fh0rd5hd1h9wmadr9q8yw8ramsjzvdc41bxqq1a"; depends=[snowfall]; }; GlobalFit = derive2 { name="GlobalFit"; version="1.2"; sha256="01s51nxcsl8xxn6khbv5jsvpwblwf0iamvr477a1rraqqqj94zx0"; depends=[sybil]; }; GlobalOptions = derive2 { name="GlobalOptions"; version="0.1.0"; sha256="1wlyqz1yhmhjwslrd7q69jbd9vsbjkjfc01g60kl3cdpyr8hlyjn"; depends=[]; }; + GmAMisc = derive2 { name="GmAMisc"; version="1.0.0"; sha256="14rs13y509hijg4ars3j55fm0133487alm8b9jlffbz8qiln48g4"; depends=[caTools classInt cluster coin corrplot DescTools dismo ggplot2 ggrepel gridExtra Hmisc InPosition kimisc lsr maptools plyr pROC raster RcmdrMisc rgdal rgeos rworldmap shape sp spatialEco spatstat]; }; Gmedian = derive2 { name="Gmedian"; version="1.2.4"; sha256="0lr1hwprqy9mq5qyp83qqxj8dh5sy487xkqbv2y1qdinzj62pvcn"; depends=[Rcpp RcppArmadillo robustbase RSpectra]; }; - Gmisc = derive2 { name="Gmisc"; version="1.6.2"; sha256="15ax691xk14y7qxnr1d0qbzb7y3ikv0x4qgsn4ss9z6b0hqclc84"; depends=[abind checkmate forestplot Hmisc htmlTable knitr lattice magrittr Rcpp rmarkdown XML]; }; + Gmisc = derive2 { name="Gmisc"; version="1.6.4"; sha256="1hqpxrff0nhbgin8x69ip3lnsj13g3alm4y8l2hv0rnxibxd4x4z"; depends=[abind checkmate forestplot Hmisc htmlTable knitr lattice magrittr Rcpp rmarkdown XML]; }; GoFKernel = derive2 { name="GoFKernel"; version="2.1-1"; sha256="0xygsdmggl35fafyp431mkwalwixw2r3f32qll1pf72dfwd8y8d3"; depends=[KernSmooth]; }; GofKmt = derive2 { name="GofKmt"; version="2.0"; sha256="0018ljzlj7nkf12g0sqa8iyq3j2bnj9la3fwblx9lbdn8nxgllhn"; depends=[Rsolnp]; }; GoodmanKruskal = derive2 { name="GoodmanKruskal"; version="0.0.2"; sha256="1qwarachkhc2yvjyxfcfbgjc1x9ni5xb7f93zviv8mz3c35bhs3b"; depends=[classInt corrplot]; }; @@ -1454,11 +1513,14 @@ in with self; { GrapheR = derive2 { name="GrapheR"; version="1.9-86"; sha256="1iizknyrpgiz1fh1fjls58n5v5fpki25j7kfbwfkp5ijf1q54ml6"; depends=[]; }; GrassmannOptim = derive2 { name="GrassmannOptim"; version="2.0"; sha256="05r5zg4kf3xd6pp56bl8ldchdxvspxkdfd33b623hndjhn4lj2lq"; depends=[Matrix]; }; GreedyEPL = derive2 { name="GreedyEPL"; version="1.0"; sha256="19b8fwxsjd6shwjxhpawa8pmlj6yn0j4577g6b93xbcs76wgrvd1"; depends=[Rcpp RcppArmadillo]; }; + GreedyExperimentalDesign = derive2 { name="GreedyExperimentalDesign"; version="1.2"; sha256="1x3hnyqq75krlygg82qm0ldd8nsv071nzgr63zkjmifc7hgi0nvb"; depends=[GreedyExperimentalDesignJARs rJava]; }; + GreedyExperimentalDesignJARs = derive2 { name="GreedyExperimentalDesignJARs"; version="1.0"; sha256="14i6m5qlh1fca9xmzid01hicd3bkf6rzl139ss78gvw544zrapw7"; depends=[rJava]; }; GreedySBTM = derive2 { name="GreedySBTM"; version="1.0"; sha256="1r29cd8nxpyc82rz2xb9mk9wc17gcdlcl9lw1j3y4npr2z0qhf13"; depends=[Rcpp RcppArmadillo]; }; Greg = derive2 { name="Greg"; version="1.2.2"; sha256="0drp9qf7yid88vcd2q2qdw23l1jynircffqnylznz8xzyh4qv7ik"; depends=[Epi forestplot Gmisc Hmisc htmlTable knitr magrittr nlme rms sandwich stringr]; }; Grid2Polygons = derive2 { name="Grid2Polygons"; version="0.2.1"; sha256="0db5kv0rbsg077h2badw28x9363ymqkr52sw5wlg9x1bk9cczhi7"; depends=[inlmisc raster rgeos sp]; }; GriegSmith = derive2 { name="GriegSmith"; version="1.0"; sha256="1a7gnaig1wvxpph7d8c37kx51dznzk0457fzf7alw95iwpyb4z7j"; depends=[spatstat]; }; GrimR = derive2 { name="GrimR"; version="0.5"; sha256="005ywc31yn1cs54kjlkrryw0s7zm8dqqfjkdlkm4s1sbc9r3mssz"; depends=[car]; }; + GroupComparisons = derive2 { name="GroupComparisons"; version="0.1.0"; sha256="0fxgh1mksrfmd4yjrpxg3nfby5wyx75lj0shb5xrdzl7pxzh56ai"; depends=[car]; }; GroupSeq = derive2 { name="GroupSeq"; version="1.3.5"; sha256="0c74nlsqa5ly0kf6p4n7gfvd0ygkq78bx851ryniwpnnalvsq8l7"; depends=[]; }; GroupTest = derive2 { name="GroupTest"; version="1.0.1"; sha256="1v2230mw0irsr5y8n45g8sd362jp7f6dy2r532mhflfdqy6i2khs"; depends=[]; }; GrpString = derive2 { name="GrpString"; version="0.3.2"; sha256="14ss6assqk6s9kv4bvzlydm8qrbnslm4vj876q5dn2dw4k50dai1"; depends=[cluster plyr Rcpp]; }; @@ -1469,10 +1531,13 @@ in with self; { HAC = derive2 { name="HAC"; version="1.0-5"; sha256="0dc79qjhyydq0k4d8wvg970hs56i9yhxjrh5ky9a178ya61vw208"; depends=[copula numDeriv]; }; HAP_ROR = derive2 { name="HAP.ROR"; version="1.0"; sha256="1id9amz1cc2l2vnpp0ikbhf8ghbgzqd1b9dfivnyglg7996c3gbg"; depends=[ape hash]; }; HAPim = derive2 { name="HAPim"; version="1.3"; sha256="03qy0pxazv3gdq3fck7171ixilb9zi1dwnvc4v7d726g0lvn80pg"; depends=[]; }; + HARModel = derive2 { name="HARModel"; version="0.1"; sha256="182ibz3xhq7wz444rsf1q8rsz1fm8ma8n3wvvb76n12ydc6hx7cr"; depends=[Rcpp RcppArmadillo sandwich xts zoo]; }; HARtools = derive2 { name="HARtools"; version="0.0.5"; sha256="10a92jsk1ccgxi5g6byrs4fbj5l2kih7vhib0jg6spdqi6rhqla1"; depends=[assertthat htmltools htmlwidgets jsonlite magrittr]; }; HBP = derive2 { name="HBP"; version="0.1.2"; sha256="0khw15xj3k40bsdbbs1m5ad1ykji3fx0549697c1svhkm7zrrny4"; depends=[BiocInstaller coin flexclust ggplot2 gplots HiTC igraph lattice multcomp OmicCircos pgirmess reshape2 rtracklayer]; }; HBSTM = derive2 { name="HBSTM"; version="1.0.1"; sha256="0bx7dxcfj46k4kqpqb39w4qkm4hvr1ka8d8rws445vkyl31kr0q6"; depends=[fBasics maps MASS]; }; HBglm = derive2 { name="HBglm"; version="0.1"; sha256="1sral7lh5qw5mn31n8459pk52frgw1bjq0z5ckpsnbc4qf3xxcjn"; depends=[bayesm Formula MfUSampler sns]; }; + HCR = derive2 { name="HCR"; version="0.1.1"; sha256="14s46dyw3ifp3pwwlcwbbl47i6hy2whjj1n65i28am5a33nycgha"; depends=[data_table]; }; + HCT = derive2 { name="HCT"; version="0.1.0"; sha256="0p1bj0spqff8m27lvxdfhk8z1r1z04v1dsv7mqbjyzl07w005hk3"; depends=[rstan]; }; HCmodelSets = derive2 { name="HCmodelSets"; version="0.1.1"; sha256="0xyaap718x01g2w5gk6yz3s87zvxfymhfn5klazn16jh8v446m4f"; depends=[ggplot2 mvtnorm survival]; }; HDCI = derive2 { name="HDCI"; version="1.0-2"; sha256="0wxbv54kbygymhh4r7052vnbj603c1kya01ykvmqzzkjyyfzidkz"; depends=[doParallel foreach glmnet iterators lattice Matrix mvtnorm slam]; }; HDDesign = derive2 { name="HDDesign"; version="1.1"; sha256="1jim4h9bwn8r637va7m81kwwsfwyzs9pzn5a9i7c8xz8b1x191bj"; depends=[]; }; @@ -1481,11 +1546,14 @@ in with self; { HDMD = derive2 { name="HDMD"; version="1.2"; sha256="0na0z08fdf47ghfl2r3fp9qg5pi99kvp7liymwxym2wglkwl4chq"; depends=[MASS psych]; }; HDPenReg = derive2 { name="HDPenReg"; version="0.93.2"; sha256="0blmp7cwsklp8aqdcyyjmv419cgc7iz0pb4629y8slqw0zq2n6gm"; depends=[Matrix Rcpp rtkore]; }; HDclassif = derive2 { name="HDclassif"; version="2.1.0"; sha256="1d79wki03yyr3hqz44xlx07msmxb59sm2mrq2za34fdbvvrmw58v"; depends=[MASS rARPACK]; }; + HDclust = derive2 { name="HDclust"; version="1.0"; sha256="1wdnigpsvwi7kpmnmv1zzkdjlb2iff76x83g06y9fbrdywhjcbgh"; depends=[Rcpp RcppProgress]; }; + HDcpDetect = derive2 { name="HDcpDetect"; version="0.1.0"; sha256="0ai35d9df5pmva52sb1rr20f11h0mbal6d179g865b7w6n90kfr1"; depends=[]; }; HDoutliers = derive2 { name="HDoutliers"; version="1.0"; sha256="0pby640bad0jcf1lkwg2g6flassb1pimnjm411c6x8rgvmiphc23"; depends=[FactoMineR FNN mclust]; }; - HDtest = derive2 { name="HDtest"; version="0.1"; sha256="0vlwpx9l6r0izfcf9fgna72w39w64b95s3q527mapjb6a3676avg"; depends=[checkmate doParallel expm foreach MASS mvtnorm]; }; + HDtest = derive2 { name="HDtest"; version="2.1"; sha256="1c9x4s59762sp7drbm5h1xv22kpifq7p0x3dkrfcd0ficbbma5v8"; depends=[checkmate clime doParallel expm fastclime foreach MASS mvtnorm]; }; HDtweedie = derive2 { name="HDtweedie"; version="1.1"; sha256="14awd7sws0464f68f5xwnv1xvr0xflvx2z2zzcfj1csvk3af0zzj"; depends=[]; }; - HEMDAG = derive2 { name="HEMDAG"; version="2.1.3"; sha256="110c37y08ivqvh5qcn6plsxf7ariqwdx6my7xv83kj2v570a4qiw"; depends=[graph PerfMeas precrec preprocessCore RBGL]; }; - HGNChelper = derive2 { name="HGNChelper"; version="0.3.6"; sha256="1bm6zxwafbp65p6w4rk2y1bw7ig60br2mk75c4frdzqw3yw0zwxd"; depends=[]; }; + HEMDAG = derive2 { name="HEMDAG"; version="2.2.5"; sha256="0j4zq8lhpscay8gvlvgzpxiwaka2hgx15lx3v16k17iwafm6b3fw"; depends=[doParallel foreach graph iterators plyr precrec preprocessCore RBGL]; }; + HGNChelper = derive2 { name="HGNChelper"; version="0.5.2"; sha256="02hqd1jajbmilwyzgpy74xy8n1406zpkha9hpzzar5pmjda41nn9"; depends=[]; }; + HGSL = derive2 { name="HGSL"; version="1.0.0"; sha256="1p453xr3d1bmqc6mrmzb0hz9p0gp25m6v6qr0l3bapcf71vzbvq1"; depends=[]; }; HH = derive2 { name="HH"; version="3.1-35"; sha256="0sykmmipbph9x7k371liiyj2vmqv0as2hr9x6yrn38ls6bscjlj4"; depends=[abind colorspace gridExtra Hmisc lattice latticeExtra leaps multcomp RColorBrewer reshape2 Rmpfr shiny vcd]; }; HHG = derive2 { name="HHG"; version="2.2"; sha256="114nfpdjdisryil9l8cws885qdskgrjm2cclx543hh4cdhpnkxnp"; depends=[Rcpp]; }; HI = derive2 { name="HI"; version="0.4"; sha256="0i7y4zcdr6wcjy43lz9h8glzpdv0pz7livr95xb1j4p8zafykday"; depends=[]; }; @@ -1497,22 +1565,25 @@ in with self; { HKprocess = derive2 { name="HKprocess"; version="0.0-2"; sha256="1j2yhb7k8zf4nlzdf0p6x9ca7ak4lwwak8mcc60kpilw2fws27k5"; depends=[gtools MCMCpack]; }; HLMdiag = derive2 { name="HLMdiag"; version="0.3.1"; sha256="02pgvfyj3xpy7laxryqivsws8jl3m79fwfzpqj8ad794a06gh87g"; depends=[ggplot2 MASS Matrix mgcv plyr Rcpp RcppArmadillo reshape2 RLRsim]; }; HLSM = derive2 { name="HLSM"; version="0.8"; sha256="1503n1qb91ca2m37g4lfzgzh1kh5l74g7z1r9s5grsj2s9by0ayh"; depends=[coda igraph MASS]; }; - HMDHFDplus = derive2 { name="HMDHFDplus"; version="1.1.8"; sha256="15z0war5isw9xnln7py3di8f45pwvdw6x6wljl18fcxpmanmlfcf"; depends=[RCurl XML]; }; + HMDHFDplus = derive2 { name="HMDHFDplus"; version="1.9.1"; sha256="0gqaagzzspw3a40dqsqhxhjb8kii6xsc62p9b464rkhrwrm5i4z8"; depends=[httr RCurl XML]; }; HMM = derive2 { name="HMM"; version="1.0"; sha256="0z0hcqfixx1l2a6d3lpy5hmh0n4gjgs0jnck441akpp3vh37glzw"; depends=[]; }; HMMCont = derive2 { name="HMMCont"; version="1.0"; sha256="1drni4f72x83sprn65wnhw0pv1q8lfkgmxdr9h4rwv1accril85x"; depends=[]; }; - HMMEsolver = derive2 { name="HMMEsolver"; version="0.1.0"; sha256="19iwy0nj0vw3cslrfdai1l1yg84c5diyxpy65jd2f419ag3rmki3"; depends=[Rcpp RcppArmadillo Rdpack]; }; + HMMEsolver = derive2 { name="HMMEsolver"; version="0.1.1"; sha256="16wiy9dlfbhn20mqq3qa5hbhaxkaqxw5wbdwcj4is5pd6zl0501p"; depends=[Rcpp RcppArmadillo Rdpack]; }; + HMMcopula = derive2 { name="HMMcopula"; version="1.0.1"; sha256="1dylgfbsij9xjkslh42vp37fbgvpafpyvjbyb234pgrynjgi1kr2"; depends=[copula doParallel foreach matrixcalc mvtnorm]; }; + HMMextra0s = derive2 { name="HMMextra0s"; version="1.0.0"; sha256="15y5q92x69sn80pc2x7xwbnsfrqpf7cjdja4hkq861jshkksbmg1"; depends=[ellipse mvtnorm]; }; HMMoce = derive2 { name="HMMoce"; version="1.0.0"; sha256="0w2hrqjz75j9l6wimz9rsr8bwa5rvag0pavmyqkcb8jgqdgka8hx"; depends=[curl doParallel dplyr fields foreach imager locfit lubridate maptools raster RColorBrewer rgeos RNetCDF sp]; }; HMP = derive2 { name="HMP"; version="1.5.1"; sha256="0v32pkgr9rhpz77y18z356lc68hcncbszawwqsldwhwc8dvb3rwn"; depends=[dirmult doParallel foreach ggplot2 gplots lattice MASS rpart rpart_plot vegan]; }; HMPTrees = derive2 { name="HMPTrees"; version="1.4"; sha256="1jha64iyb0816rdg2i3z7i31z02r72k6acmvw0ibw3sli8zcvphb"; depends=[ape dirmult doParallel foreach HMP]; }; HMR = derive2 { name="HMR"; version="0.4.2"; sha256="0rbpghih99avaq803f6hb66pfbqgzh1i2yaqs0mhbj61yyjzyb7b"; depends=[]; }; HMVD = derive2 { name="HMVD"; version="1.0"; sha256="0agzvsl2n3zg3i519b93jqpiq9zix0bbrjdzk3ymsbb42dzkmj0d"; depends=[MASS]; }; HPbayes = derive2 { name="HPbayes"; version="0.1"; sha256="1kpqnv7ymf95sgb0ik7npc4qfkzc1zb483vwnjpba4f42jhf508y"; depends=[boot corpcor MASS mvtnorm numDeriv]; }; - HRM = derive2 { name="HRM"; version="0.9.1"; sha256="0pv3lly5rm620868mkka3m0hp5k2yrpymwdjdh19s4vdj4xjnb15"; depends=[data_table ggplot2 MASS matrixcalc plyr pracma reshape2 xtable]; }; + HRM = derive2 { name="HRM"; version="1.0.2"; sha256="0krd27raa2ys2gsgqpbxpfnmigj8s6mk3al7fh3czx5l0d73iqy1"; depends=[data_table doBy ggplot2 MASS matrixcalc mvtnorm plyr pseudorank Rcpp reshape2 xtable]; }; HRQoL = derive2 { name="HRQoL"; version="1.0"; sha256="1gr9rhr8gdnh7bw2v3r0xc3yhmzrx2gzgsd8wd5mmsp81ph0h5lz"; depends=[car fmsb Matrix matrixcalc numDeriv RColorBrewer rootSolve]; }; HSAR = derive2 { name="HSAR"; version="0.4.2"; sha256="0rxb2klmyynr8rzq6ka8p40lw81wjd0jkw2wg3vg90zny0zps98j"; depends=[Rcpp RcppArmadillo spdep]; }; HSAUR = derive2 { name="HSAUR"; version="1.3-9"; sha256="0b2hyn59lr2pma87fcj7mli3qmrbnfhgd8fv02fa317rj52399qz"; depends=[]; }; HSAUR2 = derive2 { name="HSAUR2"; version="1.1-17"; sha256="0jc554lz5lj7180vd4rbrjkywar4bh38c7i9kyxhd5clg4afxpw8"; depends=[]; }; HSAUR3 = derive2 { name="HSAUR3"; version="1.0-9"; sha256="1rpvblak0xvkavbvbd35zq1lcsl5z1zp30vn70wqbkdj7szhj9b4"; depends=[]; }; + HSDiC = derive2 { name="HSDiC"; version="0.1"; sha256="0wiixb1ylx0l8qfgh5ark6alkdq87xaak1jlxizw1m589vghvqfp"; depends=[glmnet Matrix ncvreg quadprog]; }; HSSVD = derive2 { name="HSSVD"; version="1.2"; sha256="1k7ga397grl0r4p0ipjgw5xlafb2528rpww67bw7mmy01w87a1cc"; depends=[bcv]; }; HTMLUtils = derive2 { name="HTMLUtils"; version="0.1.7"; sha256="05y505jazzahnd6jsp3plqz8hd75991hhhcpcdn8093rinb1f8l1"; depends=[R2HTML]; }; HTSCluster = derive2 { name="HTSCluster"; version="2.0.8"; sha256="0wnbfh6hdx8692jilgmv8sys1zm6fqc6mim7vvjhyqlmpm8gm0kg"; depends=[capushe edgeR plotrix]; }; @@ -1528,13 +1599,15 @@ in with self; { HandTill2001 = derive2 { name="HandTill2001"; version="0.2-12"; sha256="1rijjv27zwdznznvwlb5hahixmfxayr6vs11p1mzwqma8qhsn5ak"; depends=[]; }; Hankel = derive2 { name="Hankel"; version="0.0-1"; sha256="0g3b0ji8hw29k0wxxvlnbcm0z91p4vbajbrhm6cqbccjq85lg4si"; depends=[]; }; HapEstXXR = derive2 { name="HapEstXXR"; version="0.1-8"; sha256="00p8pziy8q6vki7brpd57c7ckc9zw41c90h47yp9vb3ndanfqavp"; depends=[survival]; }; + Hapi = derive2 { name="Hapi"; version="0.0.3"; sha256="0jqjhfq38k161kqff5cx0vxpsmjm2y5ca7049mvqiwqwvi4fp08m"; depends=[ggplot2 HMM]; }; Haplin = derive2 { name="Haplin"; version="7.0.0"; sha256="1hdclx33ndjgz4xvg8myngzslcrmvc994nlgf3hp3km3591j62rj"; depends=[ff ffbase MASS mgcv snow SuppDists]; }; HaploSim = derive2 { name="HaploSim"; version="1.8.4"; sha256="0794f76hc9qvjmay7c61cmzycqafljs0g0hliq9xfrw4f23gq3sa"; depends=[]; }; HardyWeinberg = derive2 { name="HardyWeinberg"; version="1.6.1"; sha256="16n8qanxx0p5ny5zqxafn8hwb1xv94y1wig1iql8as5a5qh8lwcz"; depends=[mice Rcpp Rsolnp]; }; HarmonicRegression = derive2 { name="HarmonicRegression"; version="1.0"; sha256="0inz3l610wl0ibqjyrhfbmwmcfzcmcfhixai4lpkbfsyx93z2i4d"; depends=[]; }; Harvest_Tree = derive2 { name="Harvest.Tree"; version="1.1"; sha256="021zmppy7p2iakaxirfjdb5jzakg1ijma9d25ly2ni0nx0p1mh6z"; depends=[rpart]; }; - HelpersMG = derive2 { name="HelpersMG"; version="3.0.0"; sha256="1y5q4z9yxap16bkcjsybm2754wm0x31hfqdnp2bb4gbvhz1jhas6"; depends=[coda]; }; + HelpersMG = derive2 { name="HelpersMG"; version="3.3"; sha256="10czlshajg20k0ipq1nqawm4wad5a3pvyf4ibg47jwhlqzfxmd7f"; depends=[coda]; }; HeritSeq = derive2 { name="HeritSeq"; version="1.0.0"; sha256="0ibb2nkjk1d59gc1ljihihsjai3jp4jsbbariv05h1z26pgpc9p3"; depends=[cplm DESeq2 lme4 MASS pbapply SummarizedExperiment tweedie]; }; + HextractoR = derive2 { name="HextractoR"; version="1.3"; sha256="09x1zjpkm091yr7by83ksddka8ldczb0dg09yr1gb6j68rhlbigp"; depends=[doParallel foreach seqinr]; }; HiCblock = derive2 { name="HiCblock"; version="1.4"; sha256="07f94j9y5g6f09yi7iwag020ddfhpvrj5idfxwbr900hj3vgm1gm"; depends=[GenomeInfoDb GenomicRanges glmnet HiTC IRanges MASS Matrix rtracklayer S4Vectors]; }; HiCfeat = derive2 { name="HiCfeat"; version="1.3"; sha256="1hf24g4cph13s0cbicll3dxvxycdzwbsy6cv297vlkw4sc574ixw"; depends=[GenomeInfoDb GenomicRanges glmnet IRanges Matrix rtracklayer]; }; HiCglmi = derive2 { name="HiCglmi"; version="1.3"; sha256="17vwdhnf36cg56vidq7d85s4vgk2pnn5py1y2wsl2dm41vdl0847"; depends=[GenomeInfoDb GenomicRanges glmnet HiTC IRanges MASS Matrix rtracklayer S4Vectors]; }; @@ -1542,8 +1615,9 @@ in with self; { HiCseg = derive2 { name="HiCseg"; version="1.1"; sha256="19581k3g71wrznyqrp4hmspqyzcbcfbc48xgjlq13zmqii45hcn6"; depends=[]; }; HiDimDA = derive2 { name="HiDimDA"; version="0.2-4"; sha256="0gxkxzys9mcy33xvsim8klaqmb2xwvy5bvgkn9r400j4qfjd3cgg"; depends=[]; }; HiLMM = derive2 { name="HiLMM"; version="1.1"; sha256="09135cwi6kqrvzdlivm86q1dqn6cbbi6nspdm0c2s700jl49pl5z"; depends=[]; }; - HiResTEC = derive2 { name="HiResTEC"; version="0.52"; sha256="1kci3kxrf96ba9vawh2ln1rhpzyfkj259v8iyhrdrnhq58xrvkf5"; depends=[beeswarm Biobase InterpretMSSpectrum openxlsx plyr Rdisop xcms]; }; + HiResTEC = derive2 { name="HiResTEC"; version="0.54"; sha256="1qzdhwyrxiiwkz0j9c3pd0vdccgvhrh66sd0rc9qnh34cmqxjd6b"; depends=[beeswarm Biobase InterpretMSSpectrum openxlsx plyr Rdisop xcms]; }; HiddenMarkov = derive2 { name="HiddenMarkov"; version="1.8-11"; sha256="1yh85pdb9r90qxcl5gxslyplxzrx8knrrsl2q65l57zfkqj185ja"; depends=[]; }; + HierDpart = derive2 { name="HierDpart"; version="0.1.2"; sha256="115irjz5pfx3yd8saap57zsy0ssjhadkqmv7wadsnzwlpsv2wb1z"; depends=[adegenet diveRsity dplyr entropart GGally ggplot2 hierfstat reshape2 tibble]; }; HierO = derive2 { name="HierO"; version="0.2"; sha256="1lqj5grjly4kzxl7wb192aagz2kdvpnjdan2kcg5yxwvg1xcvwv1"; depends=[bitops RCurl rneos tcltk2 XML]; }; HighDimOut = derive2 { name="HighDimOut"; version="1.0.0"; sha256="0r7mazwq4fsz547d3nyavmqya7144lg3fkl5f7amrp48l9h85vx2"; depends=[DMwR FNN foreach ggplot2 plyr proxy]; }; HistDAWass = derive2 { name="HistDAWass"; version="1.0.1"; sha256="1lc9pz3f6akzyisgwzfl4m5z400bailv1bmsb3snha8nhpqdk3nk"; depends=[class FactoMineR ggplot2 ggridges histogram Rcpp RcppArmadillo]; }; @@ -1556,11 +1630,11 @@ in with self; { Homeric = derive2 { name="Homeric"; version="0.1-3"; sha256="1vcs8fj39zpz45p7gph0mnx65hgr35na0b79i8llyw7i1h7zqzxr"; depends=[]; }; HomoPolymer = derive2 { name="HomoPolymer"; version="1.0"; sha256="1bxc33dx9y9rr9aii4vn9d1j9v5pd4c0xayfdldz8d9m2010xr4a"; depends=[deSolve MenuCollection RGtk2]; }; HotDeckImputation = derive2 { name="HotDeckImputation"; version="1.1.0"; sha256="1mqfn6yw5846ynrcgzka0m6ikfppa5civjkhj42rhp2v2xk25li7"; depends=[Rglpk]; }; - Hotelling = derive2 { name="Hotelling"; version="1.0-4"; sha256="1ncq74ifdn1ha6wbkvygbwi2n0nwaj1lifyqp36sy0hql3ahrac9"; depends=[corpcor]; }; + Hotelling = derive2 { name="Hotelling"; version="1.0-5"; sha256="1ism2lzi2kmi62gp319qsi64pj2kj5sfh50f1qnv8vgdkb76bdx5"; depends=[corpcor]; }; HyPhy = derive2 { name="HyPhy"; version="1.0"; sha256="0994ymv7sswbp8qw3pay34s926cflw2hq2gnchw7rknybvlsrinq"; depends=[ape R_utils]; }; HybridFS = derive2 { name="HybridFS"; version="0.1.2"; sha256="05skml3v2zm5hmd6slpmx3lfwi6x5wfgbx7cnhc6l077b11jpdd9"; depends=[caTools FSelector InformationValue ROCR woeBinning]; }; HybridMC = derive2 { name="HybridMC"; version="0.2"; sha256="1wgzfyk0scwq9s2sdmc91fj7r4d7zlgwgnj6mdiia8w88ja8kzqy"; depends=[coda]; }; - HydeNet = derive2 { name="HydeNet"; version="0.10.7"; sha256="001ifh5ddg7q4rckhi662zd9a8milfi3v2gmgy76x0wq2xph7yrj"; depends=[checkmate DiagrammeR dplyr graph gRbase magrittr nnet pixiedust plyr rjags stringr]; }; + HydeNet = derive2 { name="HydeNet"; version="0.10.8"; sha256="0rb456rfx3jgvjkbn50v38aq7chi6482wxk4mm26l9n537rhdpjz"; depends=[checkmate DiagrammeR dplyr magrittr nnet pixiedust plyr rjags stringr]; }; HydroMe = derive2 { name="HydroMe"; version="2.0"; sha256="1a1d3lay94mzwk8n22l650h3p133npdf4aj63zgrdw4760p54rqf"; depends=[minpack_lm nlme]; }; HyperbolicDist = derive2 { name="HyperbolicDist"; version="0.6-2"; sha256="1wgqbx9ascyk6gw1dmvfz6hljvbh49gb9shr9qgf22qbq83waiva"; depends=[]; }; IAPWS95 = derive2 { name="IAPWS95"; version="1.1.0"; sha256="03kggkcyvbgh7l9haa1ljg0sv6f2rs06r6j0w2x7cpm31qmc3yzl"; depends=[ggplot2 pander Rcpp]; }; @@ -1570,14 +1644,14 @@ in with self; { IATanalytics = derive2 { name="IATanalytics"; version="0.1.1"; sha256="10g9iscfjmlxrkzls9320h9azpc5fnhh6276p7zn8sxqgp1nvnz9"; depends=[]; }; IATscores = derive2 { name="IATscores"; version="0.2.1"; sha256="1nm07wlrnjx36wr3jbv2faayh1vrlfid124b27w9v0x0dk145i82"; depends=[dplyr qgraph reshape2 stringr]; }; IAbin = derive2 { name="IAbin"; version="1.0"; sha256="1cpj2mx72n4v0yd8jbbnhj2w5d0sc8pw7rc8ahnn1hfa38pwwsyx"; depends=[]; }; - IBCF_MTME = derive2 { name="IBCF.MTME"; version="1.3-2"; sha256="16ynw5p26cyji6g5k7nhq56p5h86rrkrh9xr85kajb1f3dr6rmyw"; depends=[lsa tidyr]; }; + IBCF_MTME = derive2 { name="IBCF.MTME"; version="1.4-2"; sha256="07qs8jwyxl03mslgdpnxscg67js6a6lp9sdn2gp3ahyckbb0ni74"; depends=[dplyr lsa tidyr]; }; IBDLabels = derive2 { name="IBDLabels"; version="1.1"; sha256="1m9fd058yjxva6hin7i72i2nl285wfm0jkdn5xcng27yqlijyrm9"; depends=[]; }; IBDhaploRtools = derive2 { name="IBDhaploRtools"; version="1.8"; sha256="1754239pdil6b383mpzyi8zb9l9hzg15dwgn5246v97g1y3mlp5r"; depends=[]; }; IBDsim = derive2 { name="IBDsim"; version="0.9-7"; sha256="1wq0w9d4kwvq1hc5l0m8wrqfhnncapmnrh29x9vvafv50ym7yb3l"; depends=[paramlink]; }; IBrokers = derive2 { name="IBrokers"; version="0.9-12"; sha256="0mhh4kgwrncrcysvnvah6xc7fhx5ywjzn258cs9xj9kzns0jblk6"; depends=[xts zoo]; }; IC2 = derive2 { name="IC2"; version="1.0-1"; sha256="03jjb62msxjxdg9l3zd1ns0d2w37hkxy5pnjgaywxw3vfk4zwfj9"; depends=[]; }; ICAFF = derive2 { name="ICAFF"; version="1.0.1"; sha256="0zazx4nv81s75appg10aayks04mx6m5n9yf5hqrbxh3yj68vzxfy"; depends=[]; }; - ICAOD = derive2 { name="ICAOD"; version="0.9.6"; sha256="1c9zlskhsz5w1a5lkfcxclnsgxbvkgcgnbzvc3xk1mpa2zb2pvap"; depends=[cubature mnormt nloptr Rcpp RcppEigen sn]; }; + ICAOD = derive2 { name="ICAOD"; version="0.9.7"; sha256="1x1x5z5kn55vbgx6hx44f99sp666v3wlzc26q1ap1rb8j48vz2wr"; depends=[cubature mnormt nloptr Rcpp RcppEigen sn]; }; ICBayes = derive2 { name="ICBayes"; version="1.1"; sha256="1bmxba3bv9szzxvjf1blwxwdhw87h7s04cfn63c1gqpnpwsmr03y"; depends=[coda HI survival]; }; ICC = derive2 { name="ICC"; version="2.3.0"; sha256="0y8zh9715cp9bglxpygqwgigrarq37sj845lk1xl0ydwinl0a6kk"; depends=[]; }; ICC_Sample_Size = derive2 { name="ICC.Sample.Size"; version="1.0"; sha256="1w6v1jp8bfvf6c49ikswkc5527gdx5cyqnw95x00pgmm6riwlsp9"; depends=[]; }; @@ -1593,19 +1667,18 @@ in with self; { ICSOutlier = derive2 { name="ICSOutlier"; version="0.3-0"; sha256="1vj1y4zw8pkghkg4qnmx0yk1yw4zzl9075n5czrna9ckk2p29fmh"; depends=[ICS moments mvtnorm]; }; ICSShiny = derive2 { name="ICSShiny"; version="0.5"; sha256="0a13vps0mkv5qs6qnl7ar0mdbkbd7i1c6kgwahmkb3id3n9bw0cl"; depends=[DT ICS ICSNP ICSOutlier rrcov shiny simsalapar]; }; ICV = derive2 { name="ICV"; version="1.0"; sha256="1na87i39jy5d8ibldqcqz3a072ihkgcl0k629sxch9hk6v6j5lly"; depends=[]; }; - ICcalib = derive2 { name="ICcalib"; version="1.0.7"; sha256="1p224srs1jakl7iyybcn9f6r9kcwxyrikdrfa9wjgkhz60pv88fs"; depends=[fitdistrplus icenReg ICsurv MASS msm numDeriv Rcpp RcppArmadillo survival]; }; + ICcalib = derive2 { name="ICcalib"; version="1.0.8"; sha256="1y2w12ka0qxh9dg6dlcrnndz1xrv8gkppan64qkyk5vjrh18ajz4"; depends=[fitdistrplus icenReg ICsurv MASS msm numDeriv Rcpp RcppArmadillo survival]; }; ICsurv = derive2 { name="ICsurv"; version="1.0"; sha256="1mbndpy3x5731c9y955wscy76jrxlgv33bf6ldqp65cwyvdgxl86"; depends=[MASS matrixcalc]; }; ICtest = derive2 { name="ICtest"; version="0.3-1"; sha256="10wxx2b8m5h0k8f6lgf0z1xhvhr14dyrda2pf46w03fa23f5mb7l"; depends=[GGally ggplot2 ICS ICSNP JADE png Rcpp RcppArmadillo survey]; }; IDCard = derive2 { name="IDCard"; version="0.3.0"; sha256="06b5zqmgh4clni3mv6ab2a52r4z34isbz0hd1i61793gps9fkc0y"; depends=[stringr]; }; - IDE = derive2 { name="IDE"; version="0.1.0"; sha256="0z8nc2h3ivy7prxh9ndg8q3inh6rmjg7x969gj7z6qbml3122zq8"; depends=[DEoptim dplyr FRK ggplot2 Matrix sp spacetime sparseinv tidyr]; }; + IDE = derive2 { name="IDE"; version="0.2.0"; sha256="13n6zsqb78mz9gpa0vvxc73fyhf7n79bcs0j0asg3fs4iy43q6qp"; depends=[DEoptim dplyr FRK ggplot2 Matrix sp spacetime sparseinv tidyr]; }; IDF = derive2 { name="IDF"; version="1.1"; sha256="19fx04gvzwzkxbd453l3wx46s22dbnh0nxdrmsr4f7l67kihbwdr"; depends=[evd ismev]; }; IDPSurvival = derive2 { name="IDPSurvival"; version="1.2"; sha256="0hifs8vw3rxlb5vlxs1433pcv2dh7p0mxpgb2n03d98f20vkdwfw"; depends=[gtools Rsolnp survival]; }; - IDPmisc = derive2 { name="IDPmisc"; version="1.1.17"; sha256="0nbwdyg9javjjfvljwbp2jl0c6414c11zb2pirmm5pmimaq9vv0q"; depends=[lattice]; }; + IDPmisc = derive2 { name="IDPmisc"; version="1.1.18"; sha256="02f5zy69y76sn9zm8i8fhcfbppnh767csza3m4j9mzpnac4n9393"; depends=[lattice]; }; IDSpatialStats = derive2 { name="IDSpatialStats"; version="0.3.5"; sha256="05wxymvv1p7dik5y227qnp4w1lpdmqfp17zrk6iah8gyv9yjsvbh"; depends=[doParallel foreach igraph spatstat]; }; IDetect = derive2 { name="IDetect"; version="0.1.0"; sha256="1q1jwgildhx6sp883ni7vcsa3gj997855v5ky41dyf34kv7hvdl1"; depends=[]; }; - IDmining = derive2 { name="IDmining"; version="1.0.4"; sha256="1jjxw9pdhd3wx5qnjnssf0j3bg91li1ar5ps02dhv0c49hslg0x0"; depends=[data_table doParallel foreach]; }; + IDmining = derive2 { name="IDmining"; version="1.0.5"; sha256="1i6wclsp97sdbj4jp6wmpf0bkj21r8y08rvmgxcsw36rmr8kd1pa"; depends=[data_table doParallel foreach]; }; IFP = derive2 { name="IFP"; version="0.2.1"; sha256="06zyadcr8p6q0c5h9n29yl02ixysdj6lfbn9hfir0bk9hyv9yfyr"; depends=[coda haplo_stats]; }; - IFSPlot = derive2 { name="IFSPlot"; version="1.0"; sha256="0sydm9g54v5xy6m5rikx7q020aqvsilzcbg6c4vl79g9d2r8q07s"; depends=[gplots jsonlite Rcpp RcppArmadillo reshape2 rgl]; }; IGG = derive2 { name="IGG"; version="1.0"; sha256="1cibb9z18xc1zx1813lk14n6p5am84hm7w0hkrsif4j3p89lrwif"; depends=[GIGrvg glmnet MASS Matrix pscl]; }; IGP = derive2 { name="IGP"; version="0.1.0"; sha256="0xv89gmyfgnq5kzcmjbp5nx9zbr3gbdzkvffp99bxbkvf759m255"; depends=[PythonInR R6]; }; IHSEP = derive2 { name="IHSEP"; version="0.1"; sha256="1djc5509b5iyi6y0i36h77l6sq1h0w721v2isxqldcqk3gb0bx11"; depends=[lpint Rcpp]; }; @@ -1618,25 +1691,28 @@ in with self; { IMP = derive2 { name="IMP"; version="1.1"; sha256="0ilvgz2bngffyx6ifqqx1snsn6mmq7rx3wg44093yrviaw39qdfv"; depends=[dplyr ggplot2 shiny tidyr]; }; IMPACT = derive2 { name="IMPACT"; version="0.1.1"; sha256="0ai22gvmfj9j00cw742szfqqay63b5lmnszkwwdfdvidls43v0bm"; depends=[]; }; IMTest = derive2 { name="IMTest"; version="1.0.0"; sha256="0n0swbi051cr7mrjmszqg79hxa38ccyq69ws8c37ixwb0lpxmx48"; depends=[lme4 ltm MASS reshape2]; }; - IMak = derive2 { name="IMak"; version="1.2.0"; sha256="0h9hs9zpi7glf1i4gjl8xvz5hq23ask81mxpmfjpyxv03j1bwdih"; depends=[]; }; + IMak = derive2 { name="IMak"; version="1.2.1"; sha256="0yvmwqxp4y1bsbv37sdw3aa5w1j1hyqs5fs7nf2kkr6wj6ixq7ny"; depends=[]; }; + IMmailgun = derive2 { name="IMmailgun"; version="0.1.2"; sha256="09acmi6xj186fb8nhj8q0nxmkp2p32a1l95glzvz84gax4xakhz8"; depends=[httr]; }; INCATome = derive2 { name="INCATome"; version="1.0"; sha256="1gbmcirs49ydmk5rg2vl5gdy39dfx9psw5mijibzjszcfjar3kqs"; depends=[genefilter limma multtest RankProd siggenes]; }; INDperform = derive2 { name="INDperform"; version="0.1.1"; sha256="08wp7zn0s61nl2r99r3712cxkhqp9xy2vghpjjcvr5y48dkw7kzf"; depends=[cowplot dplyr ggplot2 htmlwidgets jsonlite lazyeval magrittr mgcv nlme purrr RColorBrewer rhandsontable shiny stringr tibble tidyr vegan]; }; - INLABMA = derive2 { name="INLABMA"; version="0.1-8"; sha256="13r89r14xpihfqddwzkhxg4jgxyl59826x2insrall3mj2yffj90"; depends=[Matrix sp spdep]; }; + INLABMA = derive2 { name="INLABMA"; version="0.1-11"; sha256="0wzyb3c7zpksqz198kigi4rpblvk0rjamngmyabw5xdpizxdg6zi"; depends=[Matrix sp spdep]; }; INSPIRE = derive2 { name="INSPIRE"; version="1.5"; sha256="0938l50yxnb5q628mp874ayx9ybvcjddis20y1hzm5cmlsg0hqhg"; depends=[missMDA]; }; IPCAPS = derive2 { name="IPCAPS"; version="1.1.5"; sha256="0d1nws86k1yph2f4drwrh4jvmmc9nnqmmswpwirmgsp3ma58kc42"; depends=[apcluster expm fpc KRIS LPCM MASS Matrix Rmixmod]; }; - IPEC = derive2 { name="IPEC"; version="0.1.0"; sha256="1dcmjvqsz3hlfymnlsld9psalfvq7z51yx39dkd11d25cj1mf8na"; depends=[MASS numDeriv]; }; + IPEC = derive2 { name="IPEC"; version="0.1.2"; sha256="1fglr5hs61n13251145wqzvxy362fx32yzral96xd8li76ljxiic"; depends=[MASS numDeriv]; }; IPMRF = derive2 { name="IPMRF"; version="1.2"; sha256="1zvwwhiy0p134zvm5ldc92pdd1ap72bhbrlf02rz9m2hlsxmwy67"; depends=[gbm party randomForest]; }; IPMpack = derive2 { name="IPMpack"; version="2.1"; sha256="08b79g5a9maxnxladvc2x2dgcmm427i8p6hhgda3mw2h5qmch2q3"; depends=[MASS Matrix nlme]; }; + IPSUR = derive2 { name="IPSUR"; version="3.0"; sha256="0nlxlmp2vjj17pxvx9nly85wnwgv19qs1a3fsw7p1c5jrk6daqqi"; depends=[actuar aplpack binom boot coin distrEx e1071 HH Hmisc lmtest mvtnorm prob qcc RcmdrPlugin_IPSUR reshape scatterplot3d TeachingDemos vcd]; }; IPWsurvival = derive2 { name="IPWsurvival"; version="0.5"; sha256="0lmw0ifj8cds8lzyjkkv0i0zim23p0a3pawlhmhdm3nfvwawb853"; depends=[survival]; }; IPtoCountry = derive2 { name="IPtoCountry"; version="0.0.1"; sha256="1b10z93mc31cr1c5wxp9xz9cr3jm4n4g5kav09dyallpgw60rskp"; depends=[data_table devtools dtables ggplot2 install_load maps scales]; }; IQCC = derive2 { name="IQCC"; version="0.7"; sha256="1zalpmyywkrnci0jd8irakjhiqmr52zhj1sbxf9pz5c7wks2rdbc"; depends=[MASS miscTools qcc]; }; IRATER = derive2 { name="IRATER"; version="0.0.1"; sha256="0jxdvjmnmangbqy3ibb5qrj9jz3wrzs0wa1r2gjk4v8vsbk0ipcf"; depends=[coda lattice plyr R2admb]; }; - IRISMustangMetrics = derive2 { name="IRISMustangMetrics"; version="2.1.0"; sha256="033j0dba1bzbbjn7q827h4d1rw91z8gbr2bb119lds4v8zkkfpxx"; depends=[dplyr IRISSeismic RCurl seismicRoll signal stringr XML]; }; - IRISSeismic = derive2 { name="IRISSeismic"; version="1.4.8"; sha256="0j419gn9jv9zpd2rzgsc6flz6k22gr11kany1av02cvs5dymwb4p"; depends=[pracma RCurl seismicRoll signal stringr XML]; }; + IRISMustangMetrics = derive2 { name="IRISMustangMetrics"; version="2.1.2"; sha256="02ikg1ahz0yanq92mby00s9s1njph410mqalpzfv2pbppipw26dh"; depends=[dplyr IRISSeismic RCurl seismicRoll signal stringr XML]; }; + IRISSeismic = derive2 { name="IRISSeismic"; version="1.4.9"; sha256="1732056jcq06wb65648vx4h80dfk0brd8igm6ssk5hgfjxzy221n"; depends=[pracma RCurl seismicRoll signal stringr XML]; }; IROmiss = derive2 { name="IROmiss"; version="1.0.1"; sha256="01l08s1g7h8cki372daa61pw3wac3pbv5d4yqnphg5p8ihsmrc5d"; depends=[equSA huge mvtnorm ncvreg]; }; IRTShiny = derive2 { name="IRTShiny"; version="1.2"; sha256="094ax94y6k5z4vlxfla2w19f57q0z32nwwd5npjbgmnkhvfhhl9v"; depends=[beeswarm CTT ltm psych shiny shinyAce]; }; IRTpp = derive2 { name="IRTpp"; version="0.2.6.1"; sha256="10shzyiawk65pikawvhg58kx6fpvs1dazqmfjf3rfvly1lc0px1q"; depends=[FactoMineR MASS mvtnorm numDeriv Rcpp]; }; - IRdisplay = derive2 { name="IRdisplay"; version="0.5.0"; sha256="1jwhcp9dp1kdqcx8zq6lzbczsm9rg5qlb8sd9aznpvn9a2745d9x"; depends=[repr]; }; + IRdisplay = derive2 { name="IRdisplay"; version="0.6"; sha256="1w49gbdf9gj66r9kx1s0gckl9lymmz864f8x9f96mrcwxkkchdc7"; depends=[repr]; }; + ISAT = derive2 { name="ISAT"; version="1.0.5"; sha256="0xlq568spfz527jxbqamrn1j87hnasg0kp2bcyjycaghmhsc6zmg"; depends=[gtools stringr]; }; ISBF = derive2 { name="ISBF"; version="0.2.1"; sha256="12mk4d0m5rk4m5bskkkng5j6a9dzh8l1d74wh8lnamq7kf9ai9if"; depends=[]; }; ISDA_R = derive2 { name="ISDA.R"; version="1.0"; sha256="0w6p2iy6s7fy8pw2cf4b5zhqcgjjwd5bkax1aqflaaj4ppmfx64v"; depends=[scatterplot3d]; }; ISLR = derive2 { name="ISLR"; version="1.2"; sha256="1bfay6cs40crhh34v2ksn4zdxivimfyjvk19wqbnjr7vs837l3xh"; depends=[]; }; @@ -1646,9 +1722,8 @@ in with self; { ISOweek = derive2 { name="ISOweek"; version="0.6-2"; sha256="1f1h8pgjaa14cvaj8ldl87b4vslxwvyfj46m0hkylwp73sv3g2mm"; depends=[stringr]; }; ISR3 = derive2 { name="ISR3"; version="0.98"; sha256="0mmpdl9ndlj9i0k3zl7ja0g7y9pm67igw925ld5qnz7a36plygxs"; depends=[]; }; ISwR = derive2 { name="ISwR"; version="2.0-7"; sha256="1rd1wrvl8wlc8ya5lndk74gnfvj9wp29z8617v3kbf32gqhby7ng"; depends=[]; }; - ITGM = derive2 { name="ITGM"; version="0.6"; sha256="0acrm15vb1r0nnp0bp5zf8g27i3sy3d7bpd50lj0w1rl6dgwfznh"; depends=[data_table Fgmutils ggplot2 gsubfn plyr randomcoloR rbokeh sqldf]; }; - ITNr = derive2 { name="ITNr"; version="0.2.0"; sha256="1bpnijwlrjg2l2qi9m5dlywq8xpb019kiqw288fzv6njm1yvwy56"; depends=[animation blockmodeling circlize comtradr cowplot dplyr fastmatch GGally ggplot2 GoodmanKruskal igraph intergraph maps Matrix ndtv network networkDynamic plyr RColorBrewer reshape2 sna statnet tnet WDI xergm xergm_common]; }; - ITRSelect = derive2 { name="ITRSelect"; version="1.0"; sha256="0zwgvcbjjd9wg19d36ygzsdkm04ndv91wg20wc3d78dbvyzy2kmh"; depends=[Formula Matrix ncvreg Rglpk svMisc]; }; + ITNr = derive2 { name="ITNr"; version="0.3.0"; sha256="1aiqkpxnam13r4q8q03yzd6a1wvl2gf40kqncbrpfvcaiv5zsq68"; depends=[blockmodeling circlize comtradr cowplot dplyr fastmatch GGally ggplot2 GoodmanKruskal igraph intergraph maps network networkDynamic plyr RColorBrewer reshape2 sna tnet WDI xergm_common]; }; + ITRSelect = derive2 { name="ITRSelect"; version="1.0-1"; sha256="0llr4hrlbnb728j5rw7vd3r9qlqf571hrldnm72kicis5di2v5di"; depends=[Formula Matrix ncvreg Rglpk svMisc]; }; IUPS = derive2 { name="IUPS"; version="1.0"; sha256="01pv03ink668fi2vxqybli0kgva13gxhqfdxkwz6qk5rnpzwvf5w"; depends=[boot Matching R2jags]; }; IalsaSynthesis = derive2 { name="IalsaSynthesis"; version="0.1.6"; sha256="15iwywvzhgiyigl8f488b7ra89rz0a7ymfsdgdlqfls3fmld7b4a"; depends=[testit]; }; Iboot = derive2 { name="Iboot"; version="0.1-1"; sha256="1fahh86kgv2axj2qg14n87v888sc0kb567s6zr3fh5zv361phwkq"; depends=[]; }; @@ -1656,15 +1731,16 @@ in with self; { IgorR = derive2 { name="IgorR"; version="0.8.1"; sha256="1lkiz3gxj8i1xbr5jp69z21rpk7kz3a68h29inp1qa7zi7gikmgx"; depends=[bitops]; }; ImaginR = derive2 { name="ImaginR"; version="0.1.7"; sha256="12ypfrqw6xym84i1axd3h0qd2md96rc0glas3rgzpdhdyw4lbfmn"; depends=[imager jpeg]; }; Imap = derive2 { name="Imap"; version="1.32"; sha256="0b4w0mw9ljw6zxwvi0qzb08yq9n169lzgkdcwizrd07x9k9xjxs7"; depends=[]; }; + Immigrate = derive2 { name="Immigrate"; version="0.0.1"; sha256="087hzamxb61dfsi73iv3i5i95i63ichl360h3sk18s8j217h0y3g"; depends=[pROC Rcpp]; }; ImpactIV = derive2 { name="ImpactIV"; version="1.0"; sha256="1bb6gw1h15hscr71hy779k2x5ywzx63ylim3hby02d7fnnj46p58"; depends=[nnet]; }; ImportExport = derive2 { name="ImportExport"; version="1.1"; sha256="12i9mwspk59zicn1mn21xrs90c8dqxm1q7alqbzscgkpf3xbjrnn"; depends=[chron gdata haven Hmisc RODBC xlsx]; }; ImputeRobust = derive2 { name="ImputeRobust"; version="1.3"; sha256="1mpccld9dw2v5rifla5g4qydcqkfagspnnq7r8if5lfm8mji33k3"; depends=[extremevalues gamlss gamlss_dist lattice mice purrr]; }; InPosition = derive2 { name="InPosition"; version="0.12.7"; sha256="1f7xb2kxikmja4cq7s1aiwhdq27zc6hghjbliqqpm8ci8860lb8p"; depends=[ExPosition prettyGraphs]; }; - InSilicoVA = derive2 { name="InSilicoVA"; version="1.2.0"; sha256="12fqnim6n8ha1bm8vs6ni21s5h0jb9sny88hn0xy6nsgzzzwpw5i"; depends=[coda ggplot2 InterVA5 rJava]; }; - IncDTW = derive2 { name="IncDTW"; version="1.0.3"; sha256="19ppjpczbjv1bpzyyyasr5szblrsjimpc04hazhdgqzhil0v5sj2"; depends=[ggplot2 Rcpp scales]; }; + InSilicoVA = derive2 { name="InSilicoVA"; version="1.2.4"; sha256="0118xmywm0dxia8pn807njb67fcag54ysz0679kwvjyfwkb47sra"; depends=[coda ggplot2 InterVA5 rJava]; }; + IncDTW = derive2 { name="IncDTW"; version="1.0.4"; sha256="14l13kzmf3cbhh115afxcx6diwbdfx45bvfqdv68rlzhx3dbdiwm"; depends=[data_table ggplot2 Rcpp RcppArmadillo RcppParallel scales]; }; IncucyteDRC = derive2 { name="IncucyteDRC"; version="0.5.4"; sha256="1k7jqcyx5n4my5rbyfa693ganbk91xganyagq8x8szli9h1491ii"; depends=[cowplot dplyr drc DT ggplot2 magrittr shiny tidyr XML]; }; IndTestPP = derive2 { name="IndTestPP"; version="1.0"; sha256="1ywl35k2syv46pz6ap5sjkynapqj04aq197czspqky0pvrq7ldr1"; depends=[]; }; - IndepTest = derive2 { name="IndepTest"; version="0.1.1"; sha256="1fiyafi22zs8cd42pnkf1psv4nxnrj7nk088pvk99hgasb7wjhpq"; depends=[FNN mvtnorm Rdpack]; }; + IndepTest = derive2 { name="IndepTest"; version="0.2.0"; sha256="017jasqsxm5m13rhfy9gxvd8nfib5k5y5c8520p3hcffqrxr683p"; depends=[FNN mvtnorm Rdpack]; }; IndependenceTests = derive2 { name="IndependenceTests"; version="0.2"; sha256="04qfh2mg9xkfnvp6k7w1ip4rb663p3pzww9lyprcjvr3hcac7gqa"; depends=[xtable]; }; IndexNumR = derive2 { name="IndexNumR"; version="0.1.0"; sha256="1385j7a1hz8i5g00x1p1rd32gq243w2zrzvk781zjqdq7az33fsw"; depends=[]; }; IndianTaxCalc = derive2 { name="IndianTaxCalc"; version="1.0.2"; sha256="1fxw884wj9n8drk2xz3rgr4f7b4fckh5firrf5gdz6d1nk9hdvc1"; depends=[]; }; @@ -1676,16 +1752,18 @@ in with self; { Information = derive2 { name="Information"; version="0.0.9"; sha256="0pszwzj3r7vdvdsy9w1qz95zxp7y2bsyg36b58mm4qcvcvymd4kn"; depends=[data_table doParallel foreach ggplot2 iterators plyr]; }; InformationValue = derive2 { name="InformationValue"; version="1.2.3"; sha256="1b5g2wyp7x5cdhmf4325n3q7afa6i352lh80j28c8s4356pr3w9j"; depends=[data_table ggplot2]; }; InformativeCensoring = derive2 { name="InformativeCensoring"; version="0.3.4"; sha256="145k4hggymra2jnxkcck795xk280yyldfzh9ls2irnsxmxfszr52"; depends=[boot dplyr survival]; }; - Infusion = derive2 { name="Infusion"; version="1.2.0"; sha256="00l12balvdypcypqj8b61lfbksh6jnayai4bxchnxv99h3jq4l24"; depends=[blackbox mvtnorm numDeriv pbapply proxy spaMM viridis]; }; + Infusion = derive2 { name="Infusion"; version="1.3.0"; sha256="0z6yils8ckfk0wdi45iav2yijz2cxn1zfkg3q9l6149czlnhvws1"; depends=[blackbox foreach mvtnorm numDeriv pbapply proxy spaMM viridis]; }; InjurySeverityScore = derive2 { name="InjurySeverityScore"; version="0.0.0.1"; sha256="13h2a95bzibszpbr6sjhm3hj03b4znrrczm8pvni70ln2lcskri0"; depends=[dplyr rlang tidyr]; }; InspectChangepoint = derive2 { name="InspectChangepoint"; version="1.0.1"; sha256="1wirdbz4v7hk7znpjhw9j3l596lmfcrlr4wxayw7klbbdhcwq5qs"; depends=[MASS]; }; - IntClust = derive2 { name="IntClust"; version="0.0.2"; sha256="1n0ywickky1w5m8swfidiprdnkrv0mrh9z5294bimxj5ppi1yl8v"; depends=[a4Core ade4 analogue Biobase cluster e1071 FactoMineR ggplot2 gplots gridExtra gtools limma lsa plotrix pls plyr prodlim SNFtool]; }; + IntClust = derive2 { name="IntClust"; version="0.1.0"; sha256="0whmc084gq5zip82vnwailnwvw9jawk9rx4wqiz1lr693w9xbq66"; depends=[a4Core ade4 analogue Biobase circlize cluster data_table e1071 FactoMineR ggplot2 gplots gridExtra gtools igraph limma lsa plotrix pls plyr Rdpack SNFtool]; }; IntLik = derive2 { name="IntLik"; version="1.0"; sha256="13ww5bsbf1vnpaip0w53rw99a8hxzziibj7j66cm31jmi8l6fznf"; depends=[maxLik]; }; + IntNMF = derive2 { name="IntNMF"; version="1.2.0"; sha256="09qzyvv7d4wr68qrlhcd4ivr65is3mypv1vaxpswwcjmcmyr4gzp"; depends=[cluster InterSIM MASS mclust NMF]; }; IntegrateBs = derive2 { name="IntegrateBs"; version="0.1.0"; sha256="1pkx4wpahd1sabzx55law3710x3vbh9yi6kii8gs2xfq3cb1llmq"; depends=[]; }; IntegratedJM = derive2 { name="IntegratedJM"; version="1.6"; sha256="0fv24z7vidhn09ljk09pjzkrlg2rlwxcrhfjc53ybjjgsgay99z6"; depends=[Biobase ggplot2 nlme]; }; IntegratedMRF = derive2 { name="IntegratedMRF"; version="1.1.9"; sha256="0kklgc48cib4bjfs9qbw13nkp8xyjdazrg6z15x69jylnxyakic7"; depends=[bootstrap ggplot2 limSolve MultivariateRandomForest Rcpp]; }; + InterSIM = derive2 { name="InterSIM"; version="2.2.0"; sha256="14yccan88szf26w1hg1lkvmssids961gng7il3bjr2f1l0k8vd3b"; depends=[MASS NMF]; }; InterVA4 = derive2 { name="InterVA4"; version="1.7.5"; sha256="0la99ylx8fnn4kpqa364nhs12y2hzp3sm0awsx5sfdv6n7m9js33"; depends=[]; }; - InterVA5 = derive2 { name="InterVA5"; version="1.0.1"; sha256="1wsaf48ajqnb9cb7h13jrinmszk6ayqim15fkgxbirmp88hcy9k1"; depends=[]; }; + InterVA5 = derive2 { name="InterVA5"; version="1.0.2"; sha256="0mjfvkpnl46kzas6ch8x3liffqixifdrdjc7vxfyc1a4az7kn8vq"; depends=[]; }; Interact = derive2 { name="Interact"; version="1.1"; sha256="1g9zhafdpr7j410bi8p03d8x9f8m3n329x8v01yk15f65fp7pl1d"; depends=[]; }; InteractiveIGraph = derive2 { name="InteractiveIGraph"; version="1.0.6.1"; sha256="0srxlp77xqq0vw2phfv7zcnqswi2i5nzkpqbpa5limqx00jd12zy"; depends=[igraph]; }; Interatrix = derive2 { name="Interatrix"; version="1.1.1"; sha256="1ljxgiia0y8wv1rlm5brd0yvs1r7r5wyrs6nykmwrwwya4k34mpz"; depends=[MASS tkrplot]; }; @@ -1694,7 +1772,8 @@ in with self; { Interpol_T = derive2 { name="Interpol.T"; version="2.1.1"; sha256="1fbsl1ypkc65y6c0p32gpi2a2aal8jg02mclz7ri57hf4c1k09gz"; depends=[chron date]; }; InterpretMSSpectrum = derive2 { name="InterpretMSSpectrum"; version="1.2"; sha256="1iaw4i14l2vp1f163g2q4pwv9cnqrx14ik4s8zw0iha4zwcrc3ja"; depends=[DBI doParallel enviPat foreach plyr Rdisop RSQLite]; }; IntervalSurgeon = derive2 { name="IntervalSurgeon"; version="1.0"; sha256="0dpgfgnnx6r29y8y3pac1rgi503wvlwggx5dh6fhqnxw5yfink61"; depends=[Rcpp]; }; - InvariantCausalPrediction = derive2 { name="InvariantCausalPrediction"; version="0.7-1"; sha256="1pz06l50fm8327n1v8wnvh8q51g97crb4c07si3hywd5y1hkiwkp"; depends=[glmnet linprog mboost RColorBrewer]; }; + IntrinioStockAPI = derive2 { name="IntrinioStockAPI"; version="0.0.1"; sha256="0gvkynyi2iag2kwwb51b8125md8kw65b48zk9qdf8pppg9s1r46a"; depends=[gtools httr jsonlite stringr]; }; + InvariantCausalPrediction = derive2 { name="InvariantCausalPrediction"; version="0.7-2"; sha256="08s1jhyyb60cjk314q9n24niq55n21h83ml3q9a2xhr956kch8ms"; depends=[glmnet mboost]; }; InvasionCorrection = derive2 { name="InvasionCorrection"; version="0.1"; sha256="1wwx2kssjysl1lraac36pvxq34vg8qm0vwi861rs1iipfc35i84j"; depends=[lattice]; }; Inventorymodel = derive2 { name="Inventorymodel"; version="1.1.0"; sha256="1l87xghdksgmb2k3a8j382p7ffi2pma38a6pn31sfjsa6bgmrdnk"; depends=[e1071 GameTheoryAllocation]; }; IrishDirectorates = derive2 { name="IrishDirectorates"; version="0.2.0"; sha256="1m3c3dj4729chk1n3k7awvi1jdfnds2w36vm268azg53j6c7l4b6"; depends=[]; }; @@ -1704,8 +1783,8 @@ in with self; { IsoCI = derive2 { name="IsoCI"; version="1.1"; sha256="0r7ksfic6p2v95c953s4gbzzclk4ldxysm8szb8xba1w0nx2izil"; depends=[KernSmooth]; }; IsoGene = derive2 { name="IsoGene"; version="1.0-24"; sha256="0flm0mszankvl3aizwsazyhvz2xkr4gfqiqywpc0r1swqj19610r"; depends=[affy Biobase ff Iso xtable]; }; IsoSpecR = derive2 { name="IsoSpecR"; version="1.0.3"; sha256="1cnkzc29k0inz6kdn77l0ymzjgf1hid8jza7nla4ym2s0gidgdyf"; depends=[Rcpp]; }; - IsoplotR = derive2 { name="IsoplotR"; version="1.3"; sha256="1c7m48vj4884xzxilgv8ykginaayy8mp35xf6xaw7v0f4x2w3bk9"; depends=[MASS]; }; - IsoriX = derive2 { name="IsoriX"; version="0.7.1"; sha256="1x2vdgvnfkrgcrm7pdrdvr7m72y0274dab5cyhz31j8l2gqxw9la"; depends=[latticeExtra numDeriv raster rasterVis sp spaMM viridisLite]; }; + IsoplotR = derive2 { name="IsoplotR"; version="2.1"; sha256="03fwa4agyrk5l5n42i083j36k22752vb4r87qpcw7l68h87jnbv7"; depends=[MASS]; }; + IsoriX = derive2 { name="IsoriX"; version="0.8.1"; sha256="0rr9frj0mhismls60vgax357jgfyq2wci7rvhvp70fh5k998mzid"; depends=[lattice latticeExtra numDeriv raster rasterVis sp spaMM viridisLite]; }; IsotopeR = derive2 { name="IsotopeR"; version="0.5.4"; sha256="0xgha5alh5y5qfz00rl73q4xlamnmrwij7kckljmy6zgrlrdnl6x"; depends=[colorspace ellipse fgui plotrix runjags]; }; JADE = derive2 { name="JADE"; version="2.0-1"; sha256="0s7cdvhjcdxdqv4mgjd07xi3s0ngjvpxsmy0ary735rs5y6198mm"; depends=[clue]; }; JAGUAR = derive2 { name="JAGUAR"; version="3.0.1"; sha256="0lyc8biwj9yir1i06klp2jkb31mnzwp226aw7pwabkprfhqgfmqd"; depends=[lme4 plyr Rcpp RcppArmadillo RcppProgress reshape2]; }; @@ -1714,8 +1793,9 @@ in with self; { JFE = derive2 { name="JFE"; version="1.2"; sha256="1jfdphn9435f9nmwnb4x2wj8fv7c2i432n9wyvrlqcm424ql0cml"; depends=[BurStFin fAssets fBasics fPortfolio iClick MASS PerformanceAnalytics quantmod rugarch tcltk2 timeDate timeSeries xts zoo]; }; JGEE = derive2 { name="JGEE"; version="1.1"; sha256="078348n623hlyc3n9yh67vv5acsnxapmbwybvrb1i7kawmqw5msi"; depends=[gee MASS]; }; JGL = derive2 { name="JGL"; version="2.3"; sha256="1351iq547ln06nklrgx192dqlfnn03hkwj3hrliqzfbmsls098qc"; depends=[igraph]; }; - JGR = derive2 { name="JGR"; version="1.8-4"; sha256="0zfjfqlfrsz4wjdq78zasvgd3ldgcx20h16bbar1l7wv843j71ym"; depends=[JavaGD rJava]; }; + JGR = derive2 { name="JGR"; version="1.8-6"; sha256="0n3z4dm4q93did5b7hw802akhr6gyidshvlj2db4sghmf07czk2c"; depends=[JavaGD rJava]; }; JM = derive2 { name="JM"; version="1.4-8"; sha256="1nq07hw30fqnag1h08b7crl2yfs85gyrn70aaw11bdbjv06r2x55"; depends=[MASS nlme survival]; }; + JMI = derive2 { name="JMI"; version="0.1.0"; sha256="05phkwfb9v4g9jixlvbj6br7sbi64zvrgjwfr0v87ijddkxc9si9"; depends=[Rcpp RcppArmadillo]; }; JMbayes = derive2 { name="JMbayes"; version="0.8-71"; sha256="0vbw3z1njl3jm4qixzh5fs3gmiqz7n3kz3a4a9sdxj498z063svj"; depends=[doParallel foreach Hmisc jagsUI MASS nlme Rcpp RcppArmadillo rstan shiny survival xtable]; }; JMcmprsk = derive2 { name="JMcmprsk"; version="0.9.3"; sha256="0bjaiygn2sq40f2cwa1c6j73748j2cx5q69pd4jgfgbpm9r25r4f"; depends=[MASS Rcpp]; }; JMdesign = derive2 { name="JMdesign"; version="1.1"; sha256="0w5nzhp82g0k7j5704fif16sf95rpckd76jjz9fbd71pp2d80vlh"; depends=[]; }; @@ -1724,28 +1804,28 @@ in with self; { JPEN = derive2 { name="JPEN"; version="1.0"; sha256="12rvp5bmlkwyr1gg336k655hp09gym0d2wwry70c1rz30x1sf2zs"; depends=[mvtnorm]; }; JRF = derive2 { name="JRF"; version="0.1-4"; sha256="1xpvscn9iawwa0vfh3kfwzdni436bf42nvm18b8abh033ljvqpij"; depends=[]; }; JSM = derive2 { name="JSM"; version="0.1.3"; sha256="1p5vlk2fcrb42pi7srkymjacfg05vlaspvhaw94lq1rhvxdw87yl"; depends=[nlme Rcpp RcppEigen statmod survival]; }; - JWileymisc = derive2 { name="JWileymisc"; version="0.2.1"; sha256="0cli204f1b5hj3qz62fycww12a6dv7xxxszkxgrxirw6mpdf858c"; depends=[cowplot data_table devtools foreach ggplot2 Hmisc lavaan MASS mgcv mice multcompView plyr]; }; + JWileymisc = derive2 { name="JWileymisc"; version="0.3.1"; sha256="1683sq0fb8ms0kzfc46azkjfsk2khhq43y265k1g920s5pc7bn8q"; depends=[cowplot data_table devtools emmeans foreach ggplot2 ggthemes lavaan lme4 lmerTest MASS Matrix mgcv mice multcompView nlme psych quantreg rms robustbase VGAM zoo]; }; JavaGD = derive2 { name="JavaGD"; version="0.6-1"; sha256="13n6xzbbjgd0bpwv2xgm3dlscg87wh32q6fcq50kk6byp6yv05sc"; depends=[]; }; Jdmbs = derive2 { name="Jdmbs"; version="1.3"; sha256="0jjnn1lrrakai34srp9ks8a563amd1rp9vd4ydnpmgfma5qlify0"; depends=[igraph png]; }; Jmisc = derive2 { name="Jmisc"; version="0.3.1"; sha256="1szn29dng54l2xmrm6pg3d5rmwdc1ks23vsnsmplnr5rx7yj002s"; depends=[]; }; JoSAE = derive2 { name="JoSAE"; version="0.3.0"; sha256="1vjxzbfs8a7kpmn2lb9dca67d4njmzjr3pl16s0r9ihmmxxwwili"; depends=[nlme]; }; Johnson = derive2 { name="Johnson"; version="1.4"; sha256="12ajcfz5mwxvimv8nq683a2x3590gz0gnyviviyzf5x066a4q0lj"; depends=[]; }; - JointAI = derive2 { name="JointAI"; version="0.2.0"; sha256="1y3mvj1m2mi6ss3svfrlk5lbyh3zp1mkyjgl7fv317n3xjg006s2"; depends=[coda MASS mcmcse rjags]; }; + JointAI = derive2 { name="JointAI"; version="0.3.0"; sha256="1xav3ngg4jfxbji1wqqwazywx9fhxm8snkssv8rbqvnmyc0nj49x"; depends=[coda MASS mcmcse rjags]; }; JointModel = derive2 { name="JointModel"; version="1.0"; sha256="1zgs5c7saqyqxvxmhw5sxy5w67abq344aid6igw1da05bfy2az6h"; depends=[lme4 statmod survival]; }; Julia = derive2 { name="Julia"; version="1.1"; sha256="0i1n150d89pkds7qyr0xycz6h07zikb2y07d5fcpaqs4446a8prg"; depends=[]; }; - JuliaCall = derive2 { name="JuliaCall"; version="0.14.0"; sha256="1zrj1jn55qxxg95h1rfbfgzd7dn3hxm7gkwbin6zkcxi8qdc3690"; depends=[R6 Rcpp]; }; + JuliaCall = derive2 { name="JuliaCall"; version="0.16.1"; sha256="11ganlkc65i4vljdjzhr419p1rw3dr4pw2jk6gvb8jk8pasfs36h"; depends=[Rcpp]; }; JumpTest = derive2 { name="JumpTest"; version="0.0.1"; sha256="1d5zmjwmajzdg5d1ws40zchx9wiaav01fby1v3irym2mx30jgbqn"; depends=[MASS Rcpp RcppEigen]; }; - JuniperKernel = derive2 { name="JuniperKernel"; version="1.4.0.0"; sha256="0yjfdpilz08cbnn35bxiqbn0d312mfxzdkb643db0zl34x5akxpa"; depends=[data_table gdtools jsonlite pbdZMQ Rcpp repr]; }; + JuniperKernel = derive2 { name="JuniperKernel"; version="1.4.1.0"; sha256="1zghlfwh4wsjjp7ldp5y86ffyzc27ccl5j9lcwlp1di9slaqjign"; depends=[data_table gdtools jsonlite pbdZMQ Rcpp repr]; }; KANT = derive2 { name="KANT"; version="2.0"; sha256="169j72pmdkcj6hv8qgmc02aps0ppvvl1vnr1hzrb1gsf7zj7bs3y"; depends=[affy Biobase]; }; KENDL = derive2 { name="KENDL"; version="1.1"; sha256="05vsh3x0li964a485q3n19c7fahcprvg1bnrvffagkxf8w1iz153"; depends=[]; }; KERE = derive2 { name="KERE"; version="1.0.0"; sha256="1b16cb3ihcsp9jffmd45sd7ia4pibikmj62ad344wmq22q4fpliy"; depends=[]; }; - KFAS = derive2 { name="KFAS"; version="1.3.2"; sha256="11ikpac63as1c4mz6kdrynjyy4wrfr4qrk1m2g4gbcrg10dnc06q"; depends=[]; }; + KFAS = derive2 { name="KFAS"; version="1.3.3"; sha256="026nrlwsmal9n76za4sjlfb5ybw88ricnazg018nc195c345ql04"; depends=[]; }; KFKSDS = derive2 { name="KFKSDS"; version="1.6"; sha256="1g11f936p554bfxlm4slxhfxki5vqkks1mrbqw4w83v2rcb50f8d"; depends=[]; }; KGode = derive2 { name="KGode"; version="1.0.1"; sha256="05g8zr3jm13cl6wk9m693gxa3fn5cjppm56j7ih4zzswzk9b67h9"; depends=[mvtnorm pracma pspline R6]; }; KMDA = derive2 { name="KMDA"; version="1.0"; sha256="0x4kjjdd59wvgg699vrj99wqg3s1qbkbskis1c34xv9b8bzcv94j"; depends=[]; }; KMgene = derive2 { name="KMgene"; version="1.2"; sha256="1yj9l1mqhvyhicyycnkd639q3zkrx15ba11z9911l4c0gql8syf1"; depends=[CompQuadForm coxme kinship2 MASS Matrix mgcv nlme survival]; }; KMsurv = derive2 { name="KMsurv"; version="0.1-5"; sha256="0hi5vvk584rl70gbrr75w9hc775xmbxnaig0dd6hlpi4071pnqjm"; depends=[]; }; - KODAMA = derive2 { name="KODAMA"; version="1.4"; sha256="0qzpgj6ljzd8n8vgmf53pmblsmypl86j7njd3pz0d370bxfchsqj"; depends=[Rcpp RcppArmadillo]; }; + KODAMA = derive2 { name="KODAMA"; version="1.5"; sha256="1pb7qba7dp25x4znhvihc21z5jk6bgk6sg0v24gbvqhv5irm7kwf"; depends=[Rcpp RcppArmadillo]; }; KOGMWU = derive2 { name="KOGMWU"; version="1.1"; sha256="0n07wrpmmvxflxpmhkp3gm40xz2w4j0l8dsljhmfiyxcf5y7kq2g"; depends=[pheatmap]; }; KRIG = derive2 { name="KRIG"; version="0.1.0"; sha256="1hpmjzzrh5b042xh14dgxvn5x5ini63vq5jz1i6rjgvsdf734f98"; depends=[Rcpp RcppArmadillo Rdpack]; }; KRIS = derive2 { name="KRIS"; version="1.1.1"; sha256="0v2xgdwd8lp399il6grjkysq2gj38fmjlxlvg5ciq3g3cp7cdy3m"; depends=[rARPACK]; }; @@ -1753,7 +1833,7 @@ in with self; { KRMM = derive2 { name="KRMM"; version="1.0"; sha256="0wxzhrrc4lx20nxjny7rcfw3bya7drn88zbrlzx9f531298xwbrk"; depends=[cvTools kernlab MASS robustbase]; }; KSD = derive2 { name="KSD"; version="1.0.0"; sha256="0wqmbr51yv7f87pnhph2nrj9y2d5jql2agizcaq6lax23lj6xfb7"; depends=[pryr]; }; KSEAapp = derive2 { name="KSEAapp"; version="0.99.0"; sha256="1gfgpa2d32y6bzvf4ww70sm7niq34sqmyrhi0phlqxshqq9xviqc"; depends=[gplots]; }; - KScorrect = derive2 { name="KScorrect"; version="1.2.3"; sha256="1i69glkyi3ydzfgd8d6zrbgjq7gy9laq00jdppbqnl13i1n14sp7"; depends=[MASS mclust]; }; + KScorrect = derive2 { name="KScorrect"; version="1.2.4"; sha256="16qdmvgx3y170i495vmph2bhnc3j1z5232jibr3yzxl9i887kk0f"; depends=[MASS mclust]; }; KSgeneral = derive2 { name="KSgeneral"; version="0.1.1"; sha256="1ldk3fvwbr6hw7x3ydgzixgc41a0fbbic699zjlnpj5x4mjg1qby"; depends=[dgof MASS Rcpp]; }; KTensorGraphs = derive2 { name="KTensorGraphs"; version="0.1"; sha256="1hsndxslqgca0ay4q277zjwnwz8bzwfkzz915dgqvjd2v4afrvzx"; depends=[]; }; KappaGUI = derive2 { name="KappaGUI"; version="2.0.2"; sha256="0vklny804xpd9r60j4a01j2gak8jizwjw0abf7yvbcalv3zbpb3k"; depends=[irr shiny]; }; @@ -1764,7 +1844,7 @@ in with self; { KernSmooth = derive2 { name="KernSmooth"; version="2.23-15"; sha256="1xhha8kw10jv8pv8b61hb5in9qiw3r2a9kdji3qlm991s4zd4wlb"; depends=[]; }; KernSmoothIRT = derive2 { name="KernSmoothIRT"; version="6.1"; sha256="1hq4sykddh9sg24qrnccii89nqxmq7hnldhn8wl6y62aj0h1nrqm"; depends=[plotrix Rcpp rgl]; }; KernelKnn = derive2 { name="KernelKnn"; version="1.0.8"; sha256="1xiz90n9wggn5fv42h8c6gd3j6vmkwyq1433wwnmzrz5kw7f6vgb"; depends=[Rcpp RcppArmadillo]; }; - Kernelheaping = derive2 { name="Kernelheaping"; version="2.1.8"; sha256="03m5dwgm98x6ncifyyp2yxln4bm87rkrx84bdihywjd0x73pbklv"; depends=[fastmatch ks magrittr MASS mvtnorm plyr sp sparr]; }; + Kernelheaping = derive2 { name="Kernelheaping"; version="2.2.0"; sha256="06vb8zpdf5brjsfiyd1s3gmhlfprpkw7fmjr594p4lw354lvhb4m"; depends=[fastmatch ks magrittr MASS mvtnorm plyr sp sparr]; }; KnapsackSampling = derive2 { name="KnapsackSampling"; version="0.1.0"; sha256="17yzmd11k1n5iy54vbcvpzvkm8ypbl6n1kfi931wwrrcq9y7hg22"; depends=[lpSolve]; }; Knoema = derive2 { name="Knoema"; version="0.1.16"; sha256="0v6w8rrw8nd4l1by5w9xd4hbxp55cma89kljha47ykvmnflsrjsc"; depends=[base64enc digest httr jsonlite lubridate xts zoo]; }; KnowBR = derive2 { name="KnowBR"; version="1.8"; sha256="1krkaxwx8qqlnlwc9fc663qx5y9c9lcws69fnqjdcfgim54pl3xz"; depends=[fossil mgcv plotrix sp vegan]; }; @@ -1772,8 +1852,8 @@ in with self; { KoulMde = derive2 { name="KoulMde"; version="3.1.0"; sha256="158lg1jr3lgn85wgdxww6nldy9blxnnjry6hwkp6kcjpg9jljjl8"; depends=[expm Rcpp RcppArmadillo]; }; Kpart = derive2 { name="Kpart"; version="1.2.2"; sha256="02df0pr8a0gm8558gbw9svxf5sybmg27grymy71ar9hjnhw5xlf2"; depends=[leaps]; }; KraljicMatrix = derive2 { name="KraljicMatrix"; version="0.2.1"; sha256="0yzilmiiyzd2x3v0cnjphf0wdwiblh37kgrvmfrdy49qly48pvi2"; depends=[dplyr ggplot2 magrittr tibble]; }; - KrigInv = derive2 { name="KrigInv"; version="1.3.1"; sha256="0fcfv2vl572l8qp1ilhjai6zrw15bf1z41qm7xlfspfbj611ga7k"; depends=[DiceKriging pbivnorm randtoolbox rgenoud]; }; - L0Learn = derive2 { name="L0Learn"; version="1.0.2"; sha256="0igfmw4kpc5m6r1kj944ch48sdyx82c8imid3vrk67q2pcwqqc1a"; depends=[ggplot2 Matrix Rcpp RcppArmadillo reshape2]; }; + KrigInv = derive2 { name="KrigInv"; version="1.4.1"; sha256="0x12xff7lgr1v2243shfz9a8r02qs56p7i0b8j2s6bmrzj1abrwb"; depends=[anMC DiceKriging mvtnorm pbivnorm randtoolbox rgenoud]; }; + L0Learn = derive2 { name="L0Learn"; version="1.0.8"; sha256="1d29qy7b4msb6iii9gw4i3xblyb150pvnp99jm7pl2ayh0c1vnlr"; depends=[ggplot2 Matrix Rcpp RcppArmadillo reshape2]; }; L1pack = derive2 { name="L1pack"; version="0.38.19"; sha256="09n1045lsx1ap47mhzcqghmwwhj24kvpjjr3ysprj058jp5g7ri0"; depends=[]; }; LAGOSNE = derive2 { name="LAGOSNE"; version="1.1.0"; sha256="08sf4mm40gv9mr57pxsl1b62s2dqvbvrhy2irzqspyqk5ai2aw0m"; depends=[curl dplyr lazyeval magrittr purrr rappdirs sf stringr]; }; LAM = derive2 { name="LAM"; version="0.3-48"; sha256="12a38rvb0krfl0yffhyn7nmxcgkga46kfn4h7wzvnr0hpl5a7kjf"; depends=[CDM coda MASS numDeriv Rcpp RcppArmadillo sirt TAM]; }; @@ -1781,7 +1861,7 @@ in with self; { LARF = derive2 { name="LARF"; version="1.4"; sha256="1sqib7smgjacn07ishwls1nlbvcb6fpp1vhrjwf9g4xf9jk30i8h"; depends=[Formula]; }; LBSPR = derive2 { name="LBSPR"; version="0.1.2"; sha256="09jvdjagf4icnigbfw18z36ya4llg84fa6j2khd22cl60y81r5i3"; depends=[dplyr ggplot2 gridExtra plotrix RColorBrewer Rcpp shiny tidyr]; }; LCA = derive2 { name="LCA"; version="0.1"; sha256="14nhx2fs18558zljnw56mdz3qx30v394llhzswxhznjfiiqc9z5h"; depends=[]; }; - LCAextend = derive2 { name="LCAextend"; version="1.2"; sha256="1y9azq9v42a3z5fq6gj8js89qblb2z93k4mg4jmw0wgkyv6mysfc"; depends=[boot kinship2 mvtnorm rms]; }; + LCAextend = derive2 { name="LCAextend"; version="1.3"; sha256="1l75y3vkbsmsm3pjd5pwy0hlv6gz5ryxs4pkx9aiyhxz2y9wnhpb"; depends=[boot kinship2 mvtnorm rms]; }; LCAvarsel = derive2 { name="LCAvarsel"; version="1.1"; sha256="0aqc9rbrc8n6s9xllmamby219qsnxd4ajvffjr21qlkhkaklirb1"; depends=[doParallel foreach GA MASS memoise nnet poLCA]; }; LCF = derive2 { name="LCF"; version="1.7.0"; sha256="1n5gwnkj26b7w6bzapda049bd4aqb317cip05nf0vy04xjc8giyc"; depends=[quadprog]; }; LCFdata = derive2 { name="LCFdata"; version="2.0"; sha256="1x3vbr6hdviqvd6dxn1kb449g0q5zkfmjsmr5nxd2g82p69lv3xm"; depends=[]; }; @@ -1792,7 +1872,7 @@ in with self; { LDPD = derive2 { name="LDPD"; version="1.1.2"; sha256="1khdx8vwlpliyjc4sxcdiywbxl8lc9f5s3457vcip1j8dv537lbm"; depends=[MASS nleqslv]; }; LDRTools = derive2 { name="LDRTools"; version="0.2-1"; sha256="05srfyplsypi3whfa71lx7pnad23irpf0p7rxmrpv28jgdmrz6wf"; depends=[]; }; LDcorSV = derive2 { name="LDcorSV"; version="1.3.2"; sha256="0lvk3xz400yd3w0cjdfi6hir1ym1mffd504vycwgck5fkzljpcvx"; depends=[]; }; - LDheatmap = derive2 { name="LDheatmap"; version="0.99-4"; sha256="1xdvpydnrlzb6q4hm0rcflf0vysww1xszj6ynly6a32xqmhg0sbq"; depends=[genetics snpStats]; }; + LDheatmap = derive2 { name="LDheatmap"; version="0.99-5"; sha256="0il3g3n3bzv74lz7dlhyiwc2x2417v6yhx2g47pahxdzqa09kf4s"; depends=[genetics snpStats]; }; LDtests = derive2 { name="LDtests"; version="1.0"; sha256="1jwqr7zlp9hv7vw8xp80xvrwbdv796wjgr914v393wfa07j5wbd1"; depends=[]; }; LEANR = derive2 { name="LEANR"; version="1.4.9"; sha256="053xy13ys5hibafdnbkwqdk36hw7dhanp4frfacpfpn5f9nfh95r"; depends=[foreach igraph]; }; LEAP = derive2 { name="LEAP"; version="0.2"; sha256="1yrhanxvr7krvllqzv17qkc4wvmd7mgl57am8sn53773dbfipfc4"; depends=[]; }; @@ -1808,17 +1888,17 @@ in with self; { LINselect = derive2 { name="LINselect"; version="1.1"; sha256="1dx97pnfwlv6w00qp8b2ah8jl1arfh39x1vzry8zrxgxisq407wq"; depends=[elasticnet gtools MASS mvtnorm pls randomForest]; }; LIStest = derive2 { name="LIStest"; version="2.1"; sha256="1gk253v3f1jcr4z5ps8nrqf1n7isjhbynxsi9jq729w7h725806a"; depends=[]; }; LLM = derive2 { name="LLM"; version="1.0.0"; sha256="0x4488mg8q4nhyjhqlzkwmh51frkkjn0gir22rk8rfzg4r6d18d6"; depends=[partykit RWeka stringr]; }; - LLSR = derive2 { name="LLSR"; version="0.0.2.0"; sha256="0nxp1sfnhgf0iqfhwqvr7a0mvs3swsj2l0shcyrb3zliyd23g5ax"; depends=[digest ggtern rootSolve svDialogs XLConnect]; }; + LLSR = derive2 { name="LLSR"; version="0.0.2.1"; sha256="0sspsj12ccaxbs37dlwa2y3dnq47xdhbxskx4qj81nxb9il7151d"; depends=[digest ggplot2 rootSolve svDialogs XLConnect]; }; LMERConvenienceFunctions = derive2 { name="LMERConvenienceFunctions"; version="2.10"; sha256="08jz0i7sv7gn3bqckphbmnx0kc6yjnfvi06iyf7pcdzjaybxhj06"; depends=[fields LCFdata lme4 Matrix mgcv rgl]; }; - LMest = derive2 { name="LMest"; version="2.4.2"; sha256="0a0azn3lyy0n1882c0zxf7f1b0h26rcck8mmsbh2wxg7r3nckkrd"; depends=[MASS MultiLCIRT]; }; - LMfilteR = derive2 { name="LMfilteR"; version="0.1.1"; sha256="0wjrnzki6mnar3lxfr2mcvk98b58qkqpbb9xx7vgrw567g1ga1ig"; depends=[MASS]; }; + LMest = derive2 { name="LMest"; version="2.4.3"; sha256="0ynkm4f1ri80h5fraywyvwhrm6f6sa7hp95rzl29zc91904yycx1"; depends=[MASS mmm MultiLCIRT mvtnorm]; }; + LMfilteR = derive2 { name="LMfilteR"; version="0.1.2"; sha256="10agjrljnqw689nn9af9ihhb9sq2gmsx7l3zfmrizkavjjk67mcd"; depends=[MASS]; }; LN0SCIs = derive2 { name="LN0SCIs"; version="0.1.5"; sha256="09zr6lrvv7lw9qp3vz4n2dv0v3q7wq06wwvwpb2pm0r335bnrf89"; depends=[]; }; LNIRT = derive2 { name="LNIRT"; version="0.3.0"; sha256="1xlfk3a0x8abs6xwsm9s50nvi53s1a7nhnskhvjbi3rdzkvkrwxl"; depends=[MASS]; }; LOGICOIL = derive2 { name="LOGICOIL"; version="0.99.0"; sha256="1wgg7kigzzk5ghjn3hkjf1bb8d6mvjfmkwq64phri5jpxd742ps9"; depends=[nnet]; }; LOST = derive2 { name="LOST"; version="1.3"; sha256="01ymnczsnfml04hb6hbi041khkz2aki78qr3hriw7n3bzs5i7xim"; depends=[e1071 gdata MASS miscTools pcaMethods rgl shapes]; }; LPCM = derive2 { name="LPCM"; version="0.45-0"; sha256="15gpb59556s28npdsw1r821rld7b11y1m2m97m320n9k0z4vbk3i"; depends=[]; }; LPGraph = derive2 { name="LPGraph"; version="2.0"; sha256="1d3czxihaz3f09bfb34knqb6prhcx50kh8y4qrhhakic999z6ifw"; depends=[car PMA SDMTools]; }; - LPKsample = derive2 { name="LPKsample"; version="1.0"; sha256="0vxps8zd9zg1aw4p2qd8wamcjkbl68yvppnlvshm2ry5dahwz1wk"; depends=[apcluster igraph mclust]; }; + LPKsample = derive2 { name="LPKsample"; version="2.0"; sha256="1jg99025vk42rnjdymh3nj71npn4pmdsmk6rvnx3lykpi72f85dz"; depends=[apcluster igraph mclust]; }; LPM = derive2 { name="LPM"; version="2.7"; sha256="1anjgflj1272xrghn3s9a21f2dfggppnzjqh3p8zaid91bzg0g34"; depends=[fracdiff MASS QRM]; }; LPR = derive2 { name="LPR"; version="1.0"; sha256="16kmfm6p7cwnzpd054ik0cy0ipif6zssdfyxyfm0cijz8z4z40x7"; depends=[doParallel foreach glmnet iterators lattice Matrix slam]; }; LPS = derive2 { name="LPS"; version="1.0.10"; sha256="0gf3jmhfki01z8fm5xdx59gxvhgzqd10x2iwa8369iz9dvwbjk8j"; depends=[]; }; @@ -1830,13 +1910,13 @@ in with self; { LRTH = derive2 { name="LRTH"; version="1.3"; sha256="08vakwb7ca7956gifynzijka441yyx0wd5bq5jfhz56lzcxgfb99"; depends=[]; }; LRcontrast = derive2 { name="LRcontrast"; version="1.0"; sha256="0fs06p853r42nws2camvs87py39hb1ssxhfm6d5n9kkq81snfx4q"; depends=[DoseFinding]; }; LS2W = derive2 { name="LS2W"; version="1.3.4"; sha256="1h4vvl1gfxkdjmy6syl0gf4fv03xxxw82cxwvy10b40sf20lwmnv"; depends=[MASS wavethresh]; }; - LS2Wstat = derive2 { name="LS2Wstat"; version="2.1"; sha256="0i1b409bhvlm4hpcgm4bhd7pqk4bkcyy48d7bci254ppcr7z1m9q"; depends=[geoR LS2W matrixStats RandomFields spdep]; }; + LS2Wstat = derive2 { name="LS2Wstat"; version="2.1-1"; sha256="0y9di5n8ls4xzw0yrh0kx8c73s4wf1kzdyy8ssk6garvjln9dn9v"; depends=[geoR LS2W matrixStats RandomFields spdep]; }; LSAfun = derive2 { name="LSAfun"; version="0.5.2"; sha256="114qhnx4dr7ywh3fzkjd35xygpnn74g5nv66ahj7hf5w0gg13ws9"; depends=[lsa rgl]; }; LSAmitR = derive2 { name="LSAmitR"; version="1.0-2"; sha256="15qyij193scrvc1ghcssr6qdzxc4l4qh199s09bz5hvr62zwfdgb"; depends=[Hmisc lme4]; }; LSC = derive2 { name="LSC"; version="0.1.5"; sha256="1nlnwqb24sbgvl96azh8a833ij5xknjr2wr8shs59lm2n63a3ql9"; depends=[fields gam LICORS Matrix RColorBrewer]; }; LSD = derive2 { name="LSD"; version="4.0-0"; sha256="0fsp3pwrnnic9mzkd6yxa4bnxbvg68712lb20vd42wf6jb39r2h3"; depends=[]; }; LSDinterface = derive2 { name="LSDinterface"; version="0.4.0"; sha256="0nj4m924cj7x2djalrfyrrmycq2ha6s52m34kjgs7fc9f548lhx0"; depends=[abind]; }; - LSDsensitivity = derive2 { name="LSDsensitivity"; version="0.2.0"; sha256="1aab4djk510q35gr6vj5vx1p7jhqg2ph6fw4sjbsg60bjnr3nyyi"; depends=[abind car DiceKriging kSamples LSDinterface randtoolbox rgenoud sensitivity tseries]; }; + LSDsensitivity = derive2 { name="LSDsensitivity"; version="0.3.0"; sha256="07sjb02wx28a1zvzvapvraq9wzhn3yh111amkns3j62yrznj29hz"; depends=[abind car DiceKriging diptest kSamples lawstat LSDinterface randtoolbox rgenoud sensitivity tseries]; }; LSMonteCarlo = derive2 { name="LSMonteCarlo"; version="1.0"; sha256="0w5042phkba5dw92r67ppp2s4khjpw5mm701dh9dya9lhj88bz6s"; depends=[fBasics mvtnorm]; }; LSPFP = derive2 { name="LSPFP"; version="1.0.0"; sha256="074qd7zxa54cawipmba1khb6hyrkg553vc25gf2z0ydyv14shm0w"; depends=[bit64 data_table R_utils RCurl seqinr tcltk2]; }; LSRS = derive2 { name="LSRS"; version="0.2.0"; sha256="0p70v5vbxi1rf055mqgsp8v0lxnaj53bmbghli1764yn3x1k3iw6"; depends=[]; }; @@ -1844,10 +1924,12 @@ in with self; { LTPDvar = derive2 { name="LTPDvar"; version="1.2"; sha256="0r9v5g5y9n85jdcvm7zpapm73ism48m3mmybpcmgcs028h2ndv7v"; depends=[]; }; LTR = derive2 { name="LTR"; version="1.0.0"; sha256="15g5hbrwhab80sarbjgwzvsn6c4fl18h014kz5fpzf0n1rijybik"; depends=[]; }; LTRCtrees = derive2 { name="LTRCtrees"; version="1.1.0"; sha256="07mvbk3hwl240r46ahha0a4fzq96awk963zl8dhky51b6abp83gz"; depends=[icenReg inum partykit rpart survival]; }; + LVGP = derive2 { name="LVGP"; version="2.1.3"; sha256="0lw053jgfq20lnr3cq8r8ca579a2bcksdivdpa7gy589yphrksgs"; depends=[lattice lhs randtoolbox]; }; LW1949 = derive2 { name="LW1949"; version="1.1.0"; sha256="147ymp7j98ihp1dcz3p5v9ar6h767phjdnga5q5vf1wwa2mxawg7"; depends=[MASS mgcv plotrix]; }; LZeroSpikeInference = derive2 { name="LZeroSpikeInference"; version="1.0.3"; sha256="15x29afaq13iwlj66h97k3kczg9rfgp6i9d76rji58hfgh8i8by6"; depends=[]; }; LaF = derive2 { name="LaF"; version="0.8.0"; sha256="1nasj0502i0dbzqgm1pdvmc0wj1hk2q5fzanpcsh7zslsikiqxyq"; depends=[Rcpp]; }; - LabourMarketAreas = derive2 { name="LabourMarketAreas"; version="3.2"; sha256="08jm419cf22z144csif2ndf53743v1xl9zpa6zamd3df2snr59x2"; depends=[data_table maptools rgdal rgeos sp spdep]; }; + LabourMarketAreas = derive2 { name="LabourMarketAreas"; version="3.2.2"; sha256="16v9vwy7g7vj38pbikrinvhx2b5xdl0vd9i6yr9hhdrgqls0c243"; depends=[data_table maptools rgdal rgeos sp spdep]; }; + LadR = derive2 { name="LadR"; version="1.0.4"; sha256="04wg7p9whjna1szdkqhy5m2nbqxllwfd9q2s6h85diby7r3akglz"; depends=[L1pack]; }; Lahman = derive2 { name="Lahman"; version="6.0-0"; sha256="1616iaa28z6wrxcvvmnic5awj33b7km9yxnn8bnll9yw99ks6qk6"; depends=[dplyr]; }; LakeMetabolizer = derive2 { name="LakeMetabolizer"; version="1.5.0"; sha256="06mvdrdyl0rh9rwd0jxww0sycadcp7cj08hq35q6vyzq0jkxn2xf"; depends=[plyr rLakeAnalyzer]; }; Lambda4 = derive2 { name="Lambda4"; version="3.0"; sha256="04ikkflfr0nmy1gr3gfldlh2v8mpl82k1wwnzp57d2kn75m9vbxz"; depends=[]; }; @@ -1858,15 +1940,16 @@ in with self; { LassoBacktracking = derive2 { name="LassoBacktracking"; version="0.1.2"; sha256="1z1cnj6r6cq3b8xa9qck3ijfmzsr70r2p9m1ndakijb36pgwrzcs"; depends=[Matrix Rcpp]; }; LassoSIR = derive2 { name="LassoSIR"; version="0.1.1"; sha256="0ap8335ms12nsc7jvd48244zya54w05wj91qkhb0i63730r508c3"; depends=[glmnet]; }; Laterality = derive2 { name="Laterality"; version="0.9.3"; sha256="0pl5bfbkzhgxjjzzh99s6rh4jsq0pbcgc902i0z2lmmivgs5qmd6"; depends=[ade4]; }; + LatticeDesign = derive2 { name="LatticeDesign"; version="1.0-1"; sha256="1wlchqa7914401r0mzca4fffps99nfbj0jym1jxkclnjivdgcn24"; depends=[]; }; LatticeKrig = derive2 { name="LatticeKrig"; version="7.0"; sha256="04waq7dpp86rpa8qgrjbpl72k6vhkd300vxfc1xxy5z7k36pinqh"; depends=[fields spam]; }; Lavash = derive2 { name="Lavash"; version="1.0"; sha256="0cjl8crk0rdkyzp069fk4k0sapcjmqm3q40z5mgl0i1n59kn4s07"; depends=[glmnet MASS pracma]; }; LeArEst = derive2 { name="LeArEst"; version="0.2.0"; sha256="1492r6l0azs4ga6ia02bggk1jsx6q6rg05ins9ng6f41h04v6q3m"; depends=[conicfit doParallel foreach jpeg opencpu]; }; LeLogicielR = derive2 { name="LeLogicielR"; version="1.2.1"; sha256="0jd280ial4wfj5j6sbxgl2cbxabycsgmh2zsad7v7hcwbhhdd09i"; depends=[gdata IndependenceTests RColorBrewer xtable]; }; LeafArea = derive2 { name="LeafArea"; version="0.1.7"; sha256="0pn6hh9ipr609pi49ls8wxnx7v8q1wyp84i22zzwxyzwaap5nmj2"; depends=[]; }; LearnBayes = derive2 { name="LearnBayes"; version="2.15.1"; sha256="0ch54v2zz2yyyk0lvn5rfikdmyz1qh9j1wk3585wl8v58mc0h4cv"; depends=[]; }; - LearnGeom = derive2 { name="LearnGeom"; version="1.3"; sha256="0fqf5k3gsdxwyfcbkypqiq0ir8ay8r9bdy8iljhj308ammq0mxzk"; depends=[RgoogleMaps]; }; + LearnGeom = derive2 { name="LearnGeom"; version="1.4"; sha256="0qalhy4g47ik8cq2m1zajhv79rla8g72dmcwhnizwn6afhm6fnpm"; depends=[]; }; LendingClub = derive2 { name="LendingClub"; version="2.0.0"; sha256="13qh5p4ksvgd1pmc4mdp8p44ra34fvp3s5p5vhlkpclkv5d4mxq2"; depends=[dplyr httr jsonlite plyr readr]; }; - LexisNexisTools = derive2 { name="LexisNexisTools"; version="0.1.2"; sha256="0ziy86l6q01l471lmpldhs48xqlyw1va75np5hkzaq5wapr9pfk4"; depends=[data_table quanteda scales stringdist stringi]; }; + LexisNexisTools = derive2 { name="LexisNexisTools"; version="0.2.0"; sha256="0va8fq80133cjw37ndfwgndpim8hhk4m1i29gr1lc7phivr8dfvm"; depends=[data_table pbapply quanteda reshape2 scales stringdist stringi tibble]; }; LexisPlotR = derive2 { name="LexisPlotR"; version="0.3"; sha256="1qdgs6p11j0ign27bbnn32g65sw42982ijrig5cwqsdvxpdabjl8"; depends=[ggplot2]; }; LiblineaR = derive2 { name="LiblineaR"; version="2.10-8"; sha256="17ykazac7iv02bxl8xg948vhbdr32icdm1v4bk31zmslp4xsk08g"; depends=[]; }; LiblineaR_ACF = derive2 { name="LiblineaR.ACF"; version="1.94-2"; sha256="1ldkb63yhm1ki8i585wp5byx6y0kvclwy3ncacgcdqqk0p41cyi6"; depends=[]; }; @@ -1880,13 +1963,15 @@ in with self; { LindleyR = derive2 { name="LindleyR"; version="1.1.0"; sha256="163i604q683znp6q544hnv4vibygwvsxcfhh8m7iaqr42li3c0ak"; depends=[lamW]; }; LinearRegressionMDE = derive2 { name="LinearRegressionMDE"; version="1.0"; sha256="0nl29l10y5kpds1i4sv7jwizq61fmh5c0zpj8x64qfif4l6y4v0d"; depends=[]; }; LinkageMapView = derive2 { name="LinkageMapView"; version="2.1.2"; sha256="101g4djzkxgxbn87an2vz4s9nwn8gwz7a3p3wg0y4zpdd1pdp716"; depends=[plotrix qtl RColorBrewer]; }; - LinkedMatrix = derive2 { name="LinkedMatrix"; version="1.3.0"; sha256="1p5rg50g1pq700cx9jk4ackiyin5c2nanxq677cn840w6r11vm2g"; depends=[crochet]; }; + LinkedMatrix = derive2 { name="LinkedMatrix"; version="1.3.1"; sha256="01rsgk2v1r1jhpkvvhgqqa5lf6qncxy56f7jwfgxfig3dvgjf96r"; depends=[crochet]; }; + LipidMS = derive2 { name="LipidMS"; version="1.0.0"; sha256="0pr41rdpwxmq67k94vm91dddf6gj6r46l9jy0lwqp63f8s0dij3a"; depends=[CAMERA CHNOSZ enviPick purrr]; }; Lmoments = derive2 { name="Lmoments"; version="1.2-3"; sha256="13p0r4w16jvjnyjmkhkp3dwdfr1gap2l0k4k5jy41m8nc5fvcx79"; depends=[]; }; - LncFinder = derive2 { name="LncFinder"; version="1.0.0"; sha256="1ygbmazjm2jk0wrd13khpx8rkwd51cb50qxs2zdad0w09705mpsx"; depends=[caret e1071 seqinr]; }; + LncFinder = derive2 { name="LncFinder"; version="1.1.3"; sha256="15zsll766n97q5rf3xvc3m5s7faxiybayxjzyfhsh7q9x12qnnd7"; depends=[caret e1071 seqinr]; }; LncMod = derive2 { name="LncMod"; version="1.1"; sha256="08001y7s93i3k3478jqfh9zsgpq6ym1xmdmldi7s76zbfr1nknvy"; depends=[pheatmap survival]; }; - LncPath = derive2 { name="LncPath"; version="1.0"; sha256="1cihwlj5sv000qg2wa931yx4ca6nixgihjna4g3fh7nr5aiv6cfn"; depends=[igraph samr]; }; + LncPath = derive2 { name="LncPath"; version="1.1"; sha256="1cpsy681yq96867nr9g75xb0dilb016shqlhxpdn5xyiakrgjl4v"; depends=[igraph]; }; LocFDRPois = derive2 { name="LocFDRPois"; version="1.0.0"; sha256="0zzdp9wgwr6wn3grimghpj4vq34x37c8bqg8acfzlzih8frqal3r"; depends=[dplyr ggplot2]; }; LocalControl = derive2 { name="LocalControl"; version="1.1.1"; sha256="1fshqm6ag0scjawf2vn8zz9vrx4fv0shk2qyk60adb1ms85y8rrq"; depends=[cluster gss lattice Rcpp]; }; + LocalControlStrategy = derive2 { name="LocalControlStrategy"; version="1.3.1"; sha256="0hghj1vpfwxk1w7pc61y5l3jbsp8419nyfa9xviw99m6nyrkpma3"; depends=[cluster lattice]; }; Lock5Data = derive2 { name="Lock5Data"; version="2.8"; sha256="17awskq78h23z2dy96d7hziljhnkx5phpd48q7cppxidyvzfywim"; depends=[]; }; Lock5withR = derive2 { name="Lock5withR"; version="1.2.2"; sha256="10x3i11pb4cig4pgfmw9984na5zjbg7d41y6crakiimf53ihx0c2"; depends=[]; }; LogConcDEAD = derive2 { name="LogConcDEAD"; version="1.6-1"; sha256="1hy7fnahncpsgqxfy352lxk298i69w7drlspsgdvpzdbghca3y3i"; depends=[MASS mclust mvtnorm rgl tkrplot]; }; @@ -1900,24 +1985,25 @@ in with self; { LowWAFOMNX = derive2 { name="LowWAFOMNX"; version="1.1.1"; sha256="0f75qsv6pisgvk39yagzfxscnyfsgh63rmhp4gpybpl0pqmjp48x"; depends=[Rcpp RSQLite]; }; LowWAFOMSobol = derive2 { name="LowWAFOMSobol"; version="1.1.1"; sha256="1ym3i2m1am356di9lcp5nfmxq0np3c4bwsv6bbmf7hg02j7dhwi4"; depends=[Rcpp RSQLite]; }; LumReader = derive2 { name="LumReader"; version="0.1.0"; sha256="1h2r3c9xkwlnaicn65085bdx7y86ha2fpd5mxirqax5lm6d8lirc"; depends=[gridExtra lattice plotly shiny]; }; - Luminescence = derive2 { name="Luminescence"; version="0.8.5"; sha256="01fd7hwridcrc0vi8cmj2pvpmbqdgqnh1qjnj7mq6cxcyijzd6sg"; depends=[bbmle data_table httr magrittr matrixStats minpack_lm plotrix raster Rcpp RcppArmadillo readxl shape XML zoo]; }; + Luminescence = derive2 { name="Luminescence"; version="0.8.6"; sha256="08pgy0pdvafssxmzhnazqvxi4f03qsjidvzv6vrk6r4rfkld5244"; depends=[bbmle data_table httr magrittr matrixStats minpack_lm plotrix raster Rcpp RcppArmadillo readxl shape XML zoo]; }; M2SMF = derive2 { name="M2SMF"; version="1.0"; sha256="0hf5ckpridi70yv15h0771q1grhqr9c592r87hgba7yh55dqqcq1"; depends=[dplyr MASS]; }; M3 = derive2 { name="M3"; version="0.3"; sha256="1l40alk166lshckqp72k5zmsgm7s5mgyzxlp11l64mgncjwkw2r3"; depends=[mapdata maps ncdf4 rgdal]; }; - MADPop = derive2 { name="MADPop"; version="1.1"; sha256="1w2jbiki6d14y32p8a50b8g53m1iva2kgik14yg27z5hx1rwwq97"; depends=[BH Rcpp RcppEigen rstan StanHeaders]; }; - MAINT_Data = derive2 { name="MAINT.Data"; version="1.2.2"; sha256="12ha0lznk14ijjamp6y30srkvn8y1ppn8k4dvb4b8gaip5zzj0pp"; depends=[MASS mclust miscTools pcaPP Rcpp RcppEigen robustbase rrcov sn]; }; - MALDIquant = derive2 { name="MALDIquant"; version="1.17"; sha256="047s6007ydc38x8wm027mlb4mngz15n0d4238fr8h43wyll5zy0z"; depends=[]; }; - MALDIquantForeign = derive2 { name="MALDIquantForeign"; version="0.11.1"; sha256="1aj6gakhbpis576b264s43w55dhmd5rszj54z910plybxq8hzmir"; depends=[base64enc digest MALDIquant readBrukerFlexData readMzXmlData XML]; }; + MADPop = derive2 { name="MADPop"; version="1.1.1"; sha256="07fwzpdkh2ayvx4wkmdr93jql11rf8b31abp0gghmlbysaqnv8gp"; depends=[BH Rcpp RcppEigen rstan StanHeaders]; }; + MAGNAMWAR = derive2 { name="MAGNAMWAR"; version="2.0.4"; sha256="1asr18byrgy6bkpxpmnkczgr3dam6ymf30lw6izq112krc891bg4"; depends=[ape coxme doParallel dplyr foreach iterators lme4 multcomp plyr qqman seqinr survival]; }; + MAINT_Data = derive2 { name="MAINT.Data"; version="2.0.0"; sha256="0kp5z0jg266w4mhy1hx52h14dnyhy1fjllw7z473gj4fskikp5gg"; depends=[MASS mclust miscTools pcaPP Rcpp RcppEigen robustbase rrcov sn]; }; + MALDIquant = derive2 { name="MALDIquant"; version="1.18"; sha256="18nl214xjsxkcpbg79jkmw0yznwm5szyh2qb84n7ip46mm779ha6"; depends=[]; }; + MALDIquantForeign = derive2 { name="MALDIquantForeign"; version="0.11.5"; sha256="0qyqvmdhk1a7qz6c5jsbf274xahi9zjn2faw0jyk4wbnmfj2shii"; depends=[base64enc digest MALDIquant readBrukerFlexData readMzXmlData XML]; }; MALDIrppa = derive2 { name="MALDIrppa"; version="1.0.1"; sha256="1y2nr65cvqkvzzjsr3lmpk58lqd5rqvmzjdakhwhw4s6ymggd9hf"; depends=[lattice MALDIquant robustbase signal wmtsa]; }; MAMS = derive2 { name="MAMS"; version="1.2"; sha256="19w6ydsbr60p1cmizhhmsajzasg76r23x29qcaa7mibcb5gh1yzs"; depends=[mvtnorm]; }; MAMSE = derive2 { name="MAMSE"; version="0.2-1"; sha256="0spi7fqkxjiw5j0nf7ambcr8kpzdhjzh9y3dk23y1mrk2dgc5dkw"; depends=[]; }; MANCIE = derive2 { name="MANCIE"; version="1.4"; sha256="0940xl3z5bca6hcnj2bj341l79wajilxlxzmyz3dlgrz0b3bbdmm"; depends=[]; }; - MANOVA_RM = derive2 { name="MANOVA.RM"; version="0.2.1"; sha256="1pq1mkanp1jxyygw09p4x8cgfbkrks7g6qvzfdjgdy8kli1b3mmw"; depends=[ellipse magic MASS Matrix plotrix plyr]; }; + MANOVA_RM = derive2 { name="MANOVA.RM"; version="0.3.1"; sha256="0lxqv85hc299r28m5z4id3xdgd2dism1b1zs09qly3i6byndn4gw"; depends=[ellipse magic MASS Matrix multcomp plotrix plyr]; }; MAPA = derive2 { name="MAPA"; version="2.0.4"; sha256="02s223s58k2jk49m0xlz3q9m3nip3h4dl4v58j18z2vgi54dwnjr"; depends=[forecast RColorBrewer smooth]; }; MAPLES = derive2 { name="MAPLES"; version="1.0"; sha256="0hzsh7z1k7qazpxjqbm9842zgdpl51irg7yfd119a7b2sd3a8li9"; depends=[mgcv]; }; MAR1 = derive2 { name="MAR1"; version="1.0"; sha256="1r6j890icl5h3m2876sakmwr3c65513xnsj68sy0y0q7xj3a039l"; depends=[bestglm leaps]; }; MARSS = derive2 { name="MARSS"; version="3.10.8"; sha256="1cmkish5rbv7lpm8fnv6d33plkfvxis4r4p48bx10fll1ba11m7h"; depends=[KFAS mvtnorm nlme]; }; MARX = derive2 { name="MARX"; version="0.2"; sha256="1rc87hz719khl8mclbkfdix499nsc4nyihaaavd73nany7iprm02"; depends=[fBasics matlab metRology stabledist tseries]; }; - MASS = derive2 { name="MASS"; version="7.3-50"; sha256="16hasv9k4n773jsyzvh8s3gbga49hwdj8n5hxij6zqisy4i0kxq6"; depends=[]; }; + MASS = derive2 { name="MASS"; version="7.3-51"; sha256="0yp5ssfm9mahrp30y1hkqgjg70mzs6w065ba8h7j5ky1z6msdsdy"; depends=[]; }; MASSTIMATE = derive2 { name="MASSTIMATE"; version="1.3"; sha256="0dsqinl6998jv63m6scljszpi0qb050gj5d4wnp0pcxfs9awi2gj"; depends=[]; }; MAT = derive2 { name="MAT"; version="2.2"; sha256="093axw2zp4i3f6s9621zwibcxrracp77xrc0q5q0m4yv3m35x908"; depends=[Rcpp RcppArmadillo]; }; MATA = derive2 { name="MATA"; version="0.3"; sha256="006mnc4wqh9vdigfzrzx4csgczi0idvlwb6r23w5mmsfbn0ysdm5"; depends=[]; }; @@ -1925,9 +2011,9 @@ in with self; { MAVE = derive2 { name="MAVE"; version="1.3.8"; sha256="0zr8i21z6c4jwgqdyx7kya8k9016b7fffk4fjjxgas6yg6k2x1la"; depends=[mda Rcpp RcppArmadillo]; }; MAVIS = derive2 { name="MAVIS"; version="1.1.3"; sha256="02hi3n2rligmgg9afqwkpdny2kl68simkaqdd6k1swzlrih0fs4s"; depends=[compute_es ggplot2 irr MAc MAd metafor quantreg SCMA SCRT shiny shinyAce shinyBS weightr]; }; MAVTgsa = derive2 { name="MAVTgsa"; version="1.3"; sha256="0rzal9nsi8y873cbf6hrdyzyxnpd4r1yr9fj66cn0s1c8g93ls0y"; depends=[corpcor foreach MASS multcomp randomForest]; }; - MAc = derive2 { name="MAc"; version="1.1"; sha256="1lshi5rb8l2mpd302wskhlk5vz1wjidvbss9y69l63zjqdwjs7ch"; depends=[]; }; + MAc = derive2 { name="MAc"; version="1.1.1"; sha256="1dawqmziffaz8wgcqzwc0yifdq65abgn24vafkrwa9850048c26f"; depends=[]; }; MAclinical = derive2 { name="MAclinical"; version="1.0-5"; sha256="1g0ka1kqww2xim8rp5rznkzn0a541zvf841s3lbphfh9k3y3ixs3"; depends=[e1071 party plsgenomics st]; }; - MAd = derive2 { name="MAd"; version="0.8-2"; sha256="0mhys27rmzb0kal4jr8j2y44z4qq46fw260sxl8da9qqvplcwq1p"; depends=[]; }; + MAd = derive2 { name="MAd"; version="0.8-2.1"; sha256="096vdhfsp7bd3zvv6ydai6p230r16jx8zlqc4hlhnzma8rqypm35"; depends=[]; }; MBA = derive2 { name="MBA"; version="0.0-9"; sha256="06kmrdkhwwvr3kd5w8ws6r528hhpvbhixyj98lv36kkwlx14x06g"; depends=[BH]; }; MBC = derive2 { name="MBC"; version="0.10-4"; sha256="1fp06xx9jpz5mcxs0yppzzhch9w9c1qbsdbb60r4izrxnrhggpf7"; depends=[energy Matrix]; }; MBCluster_Seq = derive2 { name="MBCluster.Seq"; version="1.0"; sha256="0xbi2r0g0gzsy05qrq1ljr5f5s3glwxj204vk2f1lgwdx3fd116m"; depends=[]; }; @@ -1936,7 +2022,6 @@ in with self; { MBI = derive2 { name="MBI"; version="1.0"; sha256="1lb0sjwa6x360n9a9pagz6yhxh37gxq1fk0f5c3i2sd56ny9jpns"; depends=[]; }; MBSGS = derive2 { name="MBSGS"; version="1.1.0"; sha256="1h5vhmpgrqza12j7ivhwgd5wyb7kkb8mjbxl5w756vyid8g03flz"; depends=[MASS MCMCpack mgcv mnormt truncnorm]; }; MBSP = derive2 { name="MBSP"; version="1.0"; sha256="0mds6jfqgmnm4saqqqqqfcg8zh4qsvd2503g3ij1sn70f0aakwaj"; depends=[coda GIGrvg MASS Matrix MCMCpack]; }; - MBTAr = derive2 { name="MBTAr"; version="1.0.1"; sha256="0zak19pdk0wwkhl4kj1jbwx0qmqcgpmmqv3vk0wg8nwgf1l65idy"; depends=[jsonlite]; }; MBmca = derive2 { name="MBmca"; version="0.0.3-5"; sha256="0p7ddpsy4hwkfwyyszidi33qpdg4xllny7g9x24gk782p7kjfgq9"; depends=[chipPCR robustbase]; }; MC2toPath = derive2 { name="MC2toPath"; version="0.0.16"; sha256="0jdn9wpxavn2wrml907v23mfxr62wwjdh7487ihjj59g434ry7wh"; depends=[RNetCDF]; }; MCAvariants = derive2 { name="MCAvariants"; version="2.0"; sha256="0akff64v49d5r0wvspal0pz17jhz1ry4vdmj47m28gzjj69zcab0"; depends=[]; }; @@ -1948,26 +2033,28 @@ in with self; { MCMC_qpcr = derive2 { name="MCMC.qpcr"; version="1.2.3"; sha256="0b9n793spljmsb58jp41vnl9c753xqaw1g4wbi4ax348cvi09jk8"; depends=[coda ggplot2 MCMCglmm]; }; MCMC4Extremes = derive2 { name="MCMC4Extremes"; version="1.1"; sha256="06p6xdbja7vrdq4vnhybpkmyf4rkaihcmy9sc81sb0h2wa21vcq0"; depends=[evir]; }; MCMCglmm = derive2 { name="MCMCglmm"; version="2.26"; sha256="0dx3464mihnm8pf2vwr409ca5m7mvm2054x9jigazg66zsd3fxyj"; depends=[ape coda corpcor cubature Matrix tensorA]; }; - MCMCpack = derive2 { name="MCMCpack"; version="1.4-3"; sha256="0rmz1rr1y7ycxj293hhy72vajbyblnrjgqvc2qgb63xfs5svi8qq"; depends=[coda lattice MASS mcmc quantreg]; }; - MCMCprecision = derive2 { name="MCMCprecision"; version="0.3.8"; sha256="1qyhxljfcnyj7450vik4j81qilvphwc1b2xv48fnx1pnapfl45wz"; depends=[combinat Matrix Rcpp RcppArmadillo RcppEigen RcppProgress]; }; - MCMCvis = derive2 { name="MCMCvis"; version="0.11.0"; sha256="099sa541xrskn1jipx16hrgasriv4jy7jgjq9vyjwcagzh2hljz3"; depends=[coda overlapping rstan]; }; + MCMCpack = derive2 { name="MCMCpack"; version="1.4-4"; sha256="1xzrgib2mjz0xpqranhdyc5m4fmg2fir9mcf51ciw5pp53b97qcp"; depends=[coda lattice MASS mcmc quantreg]; }; + MCMCprecision = derive2 { name="MCMCprecision"; version="0.3.9"; sha256="1zmlz2kwrp1qiyvq3v5vv1rsy3s2idlifmckmgznk4nkqds5ifwh"; depends=[combinat Matrix Rcpp RcppArmadillo RcppEigen RcppProgress]; }; + MCMCvis = derive2 { name="MCMCvis"; version="0.11.2"; sha256="1b81sqvmnqmbm363llgrm61zm2yy0d0myzvv28sf6pibjijdznq8"; depends=[coda overlapping rstan]; }; MCPAN = derive2 { name="MCPAN"; version="1.1-21"; sha256="0q1m0xg8825q9zjwxcz2h2n0dyr21q5bk29qbqpdhirlwm6f1a51"; depends=[magic MCMCpack multcomp mvtnorm plyr]; }; MCPMod = derive2 { name="MCPMod"; version="1.0-10"; sha256="0ns74qhm9bzi70m9bn61zs4mmqmmxxi77f49pdrcnr8wrrnn1kdn"; depends=[lattice mvtnorm]; }; MCPerm = derive2 { name="MCPerm"; version="1.1.4"; sha256="0g65vzn43k6qrsglxd2kz245f662gl3c2gdz6qvvxa96v6q9lhh1"; depends=[metafor]; }; MCS = derive2 { name="MCS"; version="0.1.3"; sha256="1kiz1jq1bm2n8f33nsybp5jfrzzl9xbsi3m9l8818ybmph99xms6"; depends=[]; }; + MCSim = derive2 { name="MCSim"; version="1.0"; sha256="1nqry41qa5c02an5fxm3y1g3w1vcqjgsy1an95i3szz1w1ndaj14"; depends=[CircStats MASS]; }; MCTM = derive2 { name="MCTM"; version="1.0"; sha256="14xjfskyrqi0m58lkwjfjpss5j7wy3ajr148n526czrrpccg108j"; depends=[]; }; MConjoint = derive2 { name="MConjoint"; version="0.1"; sha256="02yik28mhvd4rfqwrprdbdjx9c49ds55fh042bsjajs2ip467w5c"; depends=[]; }; MDFS = derive2 { name="MDFS"; version="1.0.1"; sha256="17b9lphdgp90vcldlz4p8g1a87pf1d1vg1b8vz8xhn95cb0vr4ci"; depends=[]; }; MDM = derive2 { name="MDM"; version="1.3"; sha256="1bvjhl243rf19829ly1qc20ik937hb82lq23aiysj7ya55z8hdpf"; depends=[nnet]; }; MDMR = derive2 { name="MDMR"; version="0.5.1"; sha256="1pv57xl7pjsqxz1j8mnfmjaa36mlr749yb4c44ppdrx6khvw662x"; depends=[car CompQuadForm lme4]; }; MDPtoolbox = derive2 { name="MDPtoolbox"; version="4.0.3"; sha256="0aaw787fvcyhw6mbl42icgqfdzvfr618vg179984xqifafr40dyc"; depends=[linprog Matrix]; }; - MDSMap = derive2 { name="MDSMap"; version="1.0"; sha256="15557ca83bvsqcmsa48vispagg9a05658i22cqk706shjsp782n5"; depends=[princurve reshape rgl smacof]; }; + MDSMap = derive2 { name="MDSMap"; version="1.1"; sha256="0knrkfwgl763fwdb3ln3g5y3rarnpqdfgzxf4m045664m7gkipsg"; depends=[princurve reshape rgl smacof]; }; MDimNormn = derive2 { name="MDimNormn"; version="0.8.0"; sha256="080m0irx5v8l45fg9ig5yzcj92s3ah8a9aha288byszli1cchgpn"; depends=[]; }; MDplot = derive2 { name="MDplot"; version="1.0.1"; sha256="1xijh18hrkb807nfkdr7g642aspn5psc8nw29q387jl5hly2w8s9"; depends=[gplots gtools MASS RColorBrewer]; }; MED = derive2 { name="MED"; version="0.1.0"; sha256="0fy0qmxirkdz5kigy2r7l5czjzws0fhjxy13kv1kqh628ldrp109"; depends=[]; }; MEET = derive2 { name="MEET"; version="5.1.1"; sha256="02xz2zkwqaf1wck9a3h1j6z8dasw4j0zqa88jg6h10wqzcrlp9ba"; depends=[Hmisc KernSmooth Matrix pcaMethods ROCR seqinr seqLogo]; }; + MEGENA = derive2 { name="MEGENA"; version="1.3.7"; sha256="0cr10pmj1n831scz5kgaq3nkglr3imwgc62cxng2dvdxr9991g21"; depends=[BH cluster doParallel foreach fpc ggplot2 ggraph ggrepel igraph Matrix Rcpp reshape]; }; MEMSS = derive2 { name="MEMSS"; version="0.9-2"; sha256="0wyw8yjs4miwgwdfcnfbzvkxrgv5r3jlg3cg8q2vy7s69wvhksmy"; depends=[lme4]; }; - MEPDF = derive2 { name="MEPDF"; version="1.0"; sha256="171pzhz4z0373663mfnfi5cqd9gnj0aamwr56ag16dxm8xfyppcj"; depends=[MASS plyr pracma]; }; + MEPDF = derive2 { name="MEPDF"; version="3.0"; sha256="15hbp7g5dsdpvi239jm6jn11fn371ir6la31g0flqkilq6sr1sqd"; depends=[gtools mvtnorm plyr pracma]; }; MESS = derive2 { name="MESS"; version="0.5.2"; sha256="159vnyyab31s871j5hcqwn1g1zp18ym08jz6jcgiamwn0aprbzny"; depends=[geeM geepack glmnet kinship2 MASS Matrix mvtnorm Rcpp RcppArmadillo]; }; MEclustnet = derive2 { name="MEclustnet"; version="1.2.1"; sha256="1pznisvvgshqbixyj8jya35yhmmpxxa1ivh48c9iafgapwc4yn4s"; depends=[e1071 ellipse latentnet MASS mclust mvtnorm nnet vegan]; }; MExPosition = derive2 { name="MExPosition"; version="2.0.3"; sha256="1l27wp0psfvlkk79fhb8ypf8awardjljg1f37yj42friy9pdfksz"; depends=[ExPosition prettyGraphs]; }; @@ -1976,10 +2063,10 @@ in with self; { MFDFA = derive2 { name="MFDFA"; version="1.0"; sha256="1gy1v49525i2bhr14nvpz8rqcz3lchfnvm0g53qlln55jdndgsx4"; depends=[]; }; MFHD = derive2 { name="MFHD"; version="0.0.1"; sha256="0gb8y297y1x03wy46530psmlawyv4z5dydilk36qcmadlk1wx02k"; depends=[deldir depth depthTools fda_usc matrixStats]; }; MFKnockoffs = derive2 { name="MFKnockoffs"; version="0.9.1"; sha256="1bcdqfzmllp3dri1phy365wgc9c37wlag65pzljn4p3mf43w10nq"; depends=[corpcor glmnet gtools Matrix Rdsdp RSpectra]; }; - MFPCA = derive2 { name="MFPCA"; version="1.2-3"; sha256="0zhmhk1cihk5h4c0qpcna5m687169qxlanbjc92scwab3q8hs2i9"; depends=[abind foreach funData irlba Matrix mgcv plyr]; }; + MFPCA = derive2 { name="MFPCA"; version="1.3-1"; sha256="00kr64ih16ymigyd1w5ijkk7clif18dg5fq9g3vd9j773zqg7dh2"; depends=[abind foreach funData irlba Matrix mgcv plyr]; }; MFT = derive2 { name="MFT"; version="1.3"; sha256="029apjg1fqrqfg98jczbxfy267m3f68qxvxqjzbsw1xisq4j7wc0"; depends=[]; }; MGL = derive2 { name="MGL"; version="1.1"; sha256="03q453swnangxyc4nvjhzw2zpcy5vp1wpilap5rwymnf0c0xi4j7"; depends=[]; }; - MGLM = derive2 { name="MGLM"; version="0.1.0"; sha256="06gaz82nn7fbfv7bm9xx6dsk95xq3gircvh6knzm963r1bw8f1pk"; depends=[]; }; + MGLM = derive2 { name="MGLM"; version="0.2.0"; sha256="0yyqm53lvp59zy8lkffw9x3zhqrnh29j5v3yyzk6qrgj2slnc7nk"; depends=[]; }; MGRASTer = derive2 { name="MGRASTer"; version="0.9"; sha256="0jmf2900r56v60981sabflkhid3yrqd9xd7crb56vgfl1qkva9zp"; depends=[]; }; MGSDA = derive2 { name="MGSDA"; version="1.4"; sha256="0grwl740yvz2av5nkvmyyrr8ji5f39sjs1c5gxp6lp9p36i2wc32"; depends=[MASS]; }; MHCtools = derive2 { name="MHCtools"; version="1.1.0"; sha256="03y6m3a46bzazxkrxdrii2p1fyc26il09z5676c63rk8wz9wcxa0"; depends=[rlist]; }; @@ -1999,13 +2086,14 @@ in with self; { MImix = derive2 { name="MImix"; version="1.0"; sha256="033gxr0z2xba0pgckiigblb1xa94wrfmpgv3j122cdynjch44j4r"; depends=[]; }; MInt = derive2 { name="MInt"; version="1.0.1"; sha256="1nk02baainxk7z083yyajxrnadg2y1dnhr51fianibvph1pjjkl6"; depends=[glasso MASS testthat trust]; }; MKLE = derive2 { name="MKLE"; version="0.05"; sha256="00hcihjn3xfkzy0lvb70hl2acjkwk6s3y7l4gprix24shnblvxzi"; depends=[]; }; - MKmisc = derive2 { name="MKmisc"; version="1.0"; sha256="1ykzj9flq1nx8k7aybd2sh5rd8a2hzk4gwz0iqqsl18k1khzbdla"; depends=[ggplot2 RColorBrewer robustbase]; }; - ML_MSBD = derive2 { name="ML.MSBD"; version="1.0.0"; sha256="1myr4pnznkypb7jjpyr5iv4yh29q9kv6g8gmfh9x3wy96xy15wmz"; depends=[ape]; }; + MKmisc = derive2 { name="MKmisc"; version="1.1"; sha256="1di9dbfnbi69psk3qnrfnc62amx3ifvirw2bb783y775zpg07gz7"; depends=[ggplot2 RColorBrewer robustbase scales]; }; + ML_MSBD = derive2 { name="ML.MSBD"; version="1.1.0"; sha256="0r9v6dkfarwzryai53c4z5i5isdh8clgwfpzmjsh430zbf9vkdk2"; depends=[ape]; }; MLCIRTwithin = derive2 { name="MLCIRTwithin"; version="2.1"; sha256="07fhbhfnlmllxxdpdqiaz6d72y4pj3vrz6lw5rnlb2m7vknx51ik"; depends=[limSolve MASS MultiLCIRT]; }; MLDS = derive2 { name="MLDS"; version="0.4.5"; sha256="1a5y031kd6zx0zqlk6dvxzsv3isbvg9jap4gqad2jwryh0a9x3c1"; depends=[MASS]; }; MLEcens = derive2 { name="MLEcens"; version="0.1-4"; sha256="0zlmrcjraypscgs2v0w4s4hm7qccsmaz4hjsgqpn0058vx622945"; depends=[]; }; + MLGL = derive2 { name="MLGL"; version="0.5"; sha256="020z18x5hlc1v975a7wi6vlairl8w7prjsfsvdiydl6xh56pdrr9"; depends=[FactoMineR fastcluster gglasso MASS Matrix]; }; MLID = derive2 { name="MLID"; version="1.0.1"; sha256="0ygahmcfbydzic5q3h1ppv5b2ks4lh8mcyfqq27ssmn4g1n6hdvp"; depends=[lme4 nlme]; }; - MLML2R = derive2 { name="MLML2R"; version="0.2.1"; sha256="055gps9zv8cv08lkf14p22d7r3kidwkwkhfv45xlg6i4fzcgllxb"; depends=[]; }; + MLML2R = derive2 { name="MLML2R"; version="0.3.0"; sha256="0dwhxb20f6y8daaq5684dzwcl5qpvmbqzlmwa6nkbbchpdcphjhz"; depends=[]; }; MLPUGS = derive2 { name="MLPUGS"; version="0.2.0"; sha256="1yda37073g640g1qrkjrwa8hbyq6bjlcw3wpznx0bk5h0639bc0s"; depends=[]; }; MLZ = derive2 { name="MLZ"; version="0.1.1"; sha256="1x2mmd7rb6rk2qb84i7k71w8l14m5dvkwg1xpjqgy9lzqnwhxi45"; depends=[dplyr ggplot2 gplots RcppEigen reshape2 TMB]; }; MLmetrics = derive2 { name="MLmetrics"; version="1.1.1"; sha256="061129b36h7xqw4zsznik694n8yy9qq6aaqfhdxkhdv8n5v1nzvp"; depends=[ROCR]; }; @@ -2015,6 +2103,7 @@ in with self; { MM4LMM = derive2 { name="MM4LMM"; version="1.0.5"; sha256="1kj0kq98fqsfaj2gahn16jnfj86jq1v6jnmcs5ml944yvhmwx5n3"; depends=[Matrix Rcpp RcppEigen]; }; MMAC = derive2 { name="MMAC"; version="0.1.2"; sha256="1xwz48iizf0lvmhc7krsraabc49ky85qvgr23w4ip6jzfv4sn1jr"; depends=[]; }; MMDai = derive2 { name="MMDai"; version="1.4.0"; sha256="0bb7hg8fkmzg87xr1b2hxhy75xi461ks6w12z85k4c77kswfpx3b"; depends=[DirichletReg]; }; + MMDvariance = derive2 { name="MMDvariance"; version="0.0.9"; sha256="1yiqabifym7gdknqrhfnql6qc8p163npzrrckbyqjry3yvkqr5wi"; depends=[Biobase lawstat MASS]; }; MMMS = derive2 { name="MMMS"; version="0.1"; sha256="1a71vs3k16j14zgqfd4v92dq9swrb44n9zww8na6di82nla8afck"; depends=[glmnet survival]; }; MMPPsampler = derive2 { name="MMPPsampler"; version="1.0"; sha256="1lk5hh4ihclldrbx2pbfzxvspjaywh7mg6nhs2mjr5dcdj2h0hky"; depends=[cowplot ggplot2 gtools MASS Rcpp RcppArmadillo]; }; MMS = derive2 { name="MMS"; version="3.0.11"; sha256="0gc4iz371bi65sp49gvjh99f8jvii8l0k12kn1vbpzk4a3cw7iad"; depends=[glmnet Matrix mht]; }; @@ -2023,10 +2112,10 @@ in with self; { MNP = derive2 { name="MNP"; version="3.1-0"; sha256="06qs2vsmjs6rcpqlwfc1n5y5hzxf7pngbdmiza1wijm9hh54ikh0"; depends=[MASS]; }; MNS = derive2 { name="MNS"; version="1.0"; sha256="0if46a6rw0f2d72wnykkaa5z5b1p2c0r43il6cbwbcnnb3zd8acb"; depends=[doParallel glmnet igraph MASS mvtnorm]; }; MOCCA = derive2 { name="MOCCA"; version="1.3"; sha256="1ffpnqcrkrr7vh0f1fyyai0c2wq3v8sk2qhnhds49z7p6xrsmh21"; depends=[cclust class cluster clv]; }; - MODIS = derive2 { name="MODIS"; version="1.1.2"; sha256="1iww1rnxv2xw63b5bz7xrxb3q8dmgqzbw704gshislkhjwn37q87"; depends=[bitops devtools mapdata mapedit maps maptools ptw raster RCurl rgdal rgeos sf sp XML]; }; + MODIS = derive2 { name="MODIS"; version="1.1.4"; sha256="0pyg59z17xmsxiilsamjpxickcp22lwqafqjcahsflg9gm0f0abk"; depends=[bitops curl devtools mapdata mapedit maps maptools ptw raster rgdal rgeos sf sp]; }; MODISSnow = derive2 { name="MODISSnow"; version="0.1.0.0"; sha256="1p0mil074gapw6v8paw9595rzp85hxrfsc65llh0ljalmacwgx04"; depends=[gdalUtils lubridate raster RCurl]; }; MODISTools = derive2 { name="MODISTools"; version="1.0.0"; sha256="0b3hdj26f1s07c9k67az3xl82wixzniqaidxz8269grx7vndjmsz"; depends=[httr jsonlite tidyr]; }; - MODIStsp = derive2 { name="MODIStsp"; version="1.3.5"; sha256="0mk39dvr0msx8xas6zxpzq95bg2whk8r2dc1zggh61rfi9r9d9mn"; depends=[bitops data_table gdalUtils gWidgets gWidgetsRGtk2 httr jsonlite pacman raster rgdal rgeos sp stringr xml2 xts]; }; + MODIStsp = derive2 { name="MODIStsp"; version="1.3.6"; sha256="1kilv20pknyrgxikcf5jbah2q95g1wdsvld6a9wy41vb4as743z6"; depends=[bitops data_table gdalUtils gWidgets gWidgetsRGtk2 httr jsonlite pacman raster rgdal rgeos sp stringr xml2 xts]; }; MOEADr = derive2 { name="MOEADr"; version="1.1.0"; sha256="0q0bm13v85raq5hdfpzg4v5kj12zjh31fr1x0zv9g5blxy10dqgy"; depends=[assertthat FNN]; }; MOJOV = derive2 { name="MOJOV"; version="1.0.1"; sha256="11mcqxw83z4xx29s34v4rsbb3zvyhlb2lmvf97b77n455gsy5hab"; depends=[aod lattice saws survey]; }; MOLHD = derive2 { name="MOLHD"; version="0.2"; sha256="1lrl24x7iig15jwxigvqm3jdwnxkn948sxmywn6zi2b1a5hqz05k"; depends=[arrangements fields]; }; @@ -2037,7 +2126,9 @@ in with self; { MPDiR = derive2 { name="MPDiR"; version="0.1-16"; sha256="10g4dnysjnzf106qibqqcrxz3xw2nfh4ck1n1dlciwahr0f80j13"; depends=[]; }; MPINet = derive2 { name="MPINet"; version="1.0"; sha256="1zw3piqhhpagg5qahc2xahxxfdwdk8w94aass1virlpl0f52ik8s"; depends=[BiasedUrn mgcv]; }; MPLikelihoodWB = derive2 { name="MPLikelihoodWB"; version="1.1"; sha256="0xgj349jkv29ldia4lmsiwnkhrk99aqcrvyiy3si5knmi1jvx9q0"; depends=[MASS survival]; }; + MPN = derive2 { name="MPN"; version="0.1.0"; sha256="1hhdr9c3diy889cw4lnfiv5zy3sqdxfywy2mz58hd3ny2iql5rs1"; depends=[]; }; MPR_genotyping = derive2 { name="MPR.genotyping"; version="0.8"; sha256="0lsrbks7nhfnrmk8kclh09rc132j3divjxrzjfrg8zijbzkfx1pn"; depends=[qtl]; }; + MPS = derive2 { name="MPS"; version="2.3.0"; sha256="0rr66f3ijzvqzj6b0hl7i065r5ndzcb2r5sjhx32rihgjdg60lr3"; depends=[]; }; MPSEM = derive2 { name="MPSEM"; version="0.3-4"; sha256="0pj3gv2waxg5v1xv0qcwscq2c0g5w4w2b9ip3b761gs75mdy07g0"; depends=[ape MASS]; }; MPTinR = derive2 { name="MPTinR"; version="1.11.0"; sha256="1pflypcysc43yp4rh1lxnf7f0qklc6rl4y1mvj6ydwv5nlz52mbh"; depends=[Brobdingnag numDeriv Rcpp RcppEigen]; }; MPV = derive2 { name="MPV"; version="1.53"; sha256="14qnvcqqscd9hwn2mxf5dclv3ncj7w6vc3blxaml3rflriha6rls"; depends=[]; }; @@ -2046,8 +2137,11 @@ in with self; { MRCE = derive2 { name="MRCE"; version="2.1"; sha256="12q7mqn2qkgv992df71k1xmli61khhbfm7lw0n7z2l7qqldpiw1n"; depends=[QUIC]; }; MRCV = derive2 { name="MRCV"; version="0.3-3"; sha256="0m29mpsd3kackwrawvahi22j0aghfb12x9j18xk4x1w4bkpiscmf"; depends=[tables]; }; MRFA = derive2 { name="MRFA"; version="0.2"; sha256="1ld9bchldx4y8g0zp2nr6r439f9vqy5xcr9bkv4g4vphm2c5zq72"; depends=[fields foreach glmnet grplasso plyr randtoolbox]; }; + MRFcov = derive2 { name="MRFcov"; version="1.0.35"; sha256="05x69gh21jxh49l2pbjkw4i30psf4wx3vpi0m0bi9vsaq7qjczrr"; depends=[caret dplyr ggplot2 glmnet gridExtra igraph magrittr Matrix mgcv pbapply plyr purrr reshape2 sfsmisc]; }; MRH = derive2 { name="MRH"; version="2.2"; sha256="1icwlq8js58g9fkiq7fwjg8r97ca47xl3dscnhnga99gkgsfgjwl"; depends=[coda KMsurv survival]; }; + MRHawkes = derive2 { name="MRHawkes"; version="1.0"; sha256="0qhwm708jijv1w6iml18bg7fc2igdcmydwpb9dzpa4gwwads8b78"; depends=[IHSEP]; }; MRMR = derive2 { name="MRMR"; version="0.1.4"; sha256="0dgbhlynaaka7mdzl6igwgcdzvy6cm2y8mbxaf9pfla8w3z8y0lq"; depends=[ggplot2 lmtest lubridate plyr reshape2]; }; + MRPC = derive2 { name="MRPC"; version="2.0.0"; sha256="1gy755y2xq9fdnbgwxi32l4abyirm8q9pqwbk8rrc2c26nhdi5fb"; depends=[bnlearn compositions dynamicTreeCut fastcluster GGally graph gtools Hmisc mice network pcalg Rgraphviz sna WGCNA]; }; MRQoL = derive2 { name="MRQoL"; version="1.0"; sha256="0isn4g3jpz7wm99ymrshl6zgkb7iancdzdxl2w98n8fbxsh5z6sw"; depends=[]; }; MRS = derive2 { name="MRS"; version="1.2.4"; sha256="1sksg70zb72ys1b7vi8amjaqarmdh8vf2l1rb0rasrlvrip3z3br"; depends=[igraph Rcpp RcppArmadillo]; }; MRSP = derive2 { name="MRSP"; version="0.4.3"; sha256="0zv22xiq3qh9x3r2ckkvq1vv0vkcirh8y87053bqvw1m20j7q1by"; depends=[Formula matrixcalc]; }; @@ -2055,21 +2149,24 @@ in with self; { MRsurv = derive2 { name="MRsurv"; version="0.2"; sha256="148myzk6r8whkpv1yv59dmdlr2n8vdwmaww165aw696xfjxwq550"; depends=[mvtnorm survival]; }; MRwarping = derive2 { name="MRwarping"; version="1.0"; sha256="13bcs7rlm4irx7yzdnib558w9014a4chh9xwc010m6pxvxv36qnv"; depends=[boa SemiPar]; }; MSCMT = derive2 { name="MSCMT"; version="1.3.3"; sha256="1962lc6p5cy8pkbshzbl3jnd2pqnk9afs4lmp4qb7fqkmb4xpka3"; depends=[ggplot2 lpSolve lpSolveAPI Rdpack Rglpk]; }; + MSEtool = derive2 { name="MSEtool"; version="1.1.0"; sha256="0cckn56n8zn7srhzi6bczlg2i4qhfws43nwzjbc3har07n4h56sj"; depends=[coda corpcor DLMtool gplots MASS mvtnorm pryr r4ss RcppEigen reshape2 snowfall TMB]; }; MSG = derive2 { name="MSG"; version="0.3"; sha256="181kzkbw69bs3vir6dzgq7jzp8xcpg1p4isfb660vgnd1flb03ix"; depends=[RColorBrewer]; }; MSGARCH = derive2 { name="MSGARCH"; version="2.3"; sha256="0dax3cx0dzmg086vhymnm5x5s7ljdnxx1k52xnnvrm6pprhdgaqn"; depends=[coda expm fanplot MASS numDeriv Rcpp RcppArmadillo zoo]; }; MSGLasso = derive2 { name="MSGLasso"; version="2.1"; sha256="1k17vnvzr647pwfbdxrpqcsp34iygq86wf0ns4rq8cj6q5mik1bv"; depends=[]; }; MSIseq = derive2 { name="MSIseq"; version="1.0.0"; sha256="1v2why1k6pjsc04044nr74571p7541nciq7xkzmya3jq6dw878j3"; depends=[IRanges R_utils rJava RWeka]; }; + MSMwRA = derive2 { name="MSMwRA"; version="1.3"; sha256="0b0fqfv6iick1brqik4rqz2936nfa51i6xlfavs65r9692wks73q"; depends=[]; }; + MSPRT = derive2 { name="MSPRT"; version="1.0"; sha256="1ciiqfqpl25xvyrfp005gnkxildqkxsnzmb2slxnr8h1an0clb2g"; depends=[doParallel foreach ggplot2 iterators nleqslv]; }; MSQC = derive2 { name="MSQC"; version="1.0.2"; sha256="11wcy04cpjlnc71s2svs4lm1cp718dz1p4a1603x6zwpbf22bygn"; depends=[rgl]; }; MST = derive2 { name="MST"; version="2.1"; sha256="16mnsn2an02k4jrqb6yj0n1i563zny5v10ngfq1y28fqaw6h8yyq"; depends=[Formula MASS partykit survival]; }; - MSbox = derive2 { name="MSbox"; version="1.1"; sha256="0hal7cqfmmcsckysxnwr2qsa2b61ck4zgbdl52w1iqkkvm8qq1x9"; depends=[stringr]; }; + MSbox = derive2 { name="MSbox"; version="1.1.1"; sha256="1bw1c6yf3lnvd0rb3nwcrq3yckwnnrvck96mdq64njjldap8i152"; depends=[magick stringr xml2]; }; MScombine = derive2 { name="MScombine"; version="1.1"; sha256="0kgz1l4jlhcada3fp02dscf4zx6a22cjxj251838lfz65f512hrn"; depends=[plyr]; }; MSeasy = derive2 { name="MSeasy"; version="5.3.3"; sha256="191mvg1imxfjlnd808ypn4lsjx7n6ydf16flax79hv01z7rcjylh"; depends=[amap cluster clValid fpc mzR xcms]; }; MSeasyTkGUI = derive2 { name="MSeasyTkGUI"; version="5.3.3"; sha256="0ihz8vr2wbgy88bzssilgvlhkbr13jznfjvnqy73wpchqgwy0wy6"; depends=[MSeasy]; }; - MSwM = derive2 { name="MSwM"; version="1.3"; sha256="1ny7rzpq6x6yy0iz3ad51vwdh7i4sy60pvgdxda3jcz5wal3hgqm"; depends=[nlme]; }; + MSwM = derive2 { name="MSwM"; version="1.4"; sha256="1zhfar02s7hm4gjs1flkh9a4526d98hik8bqrksy75758baiqg7l"; depends=[nlme]; }; MTA = derive2 { name="MTA"; version="0.1.2"; sha256="1149xjq6ybjv6llzlq67j5xc6dspb4mvd72n62nlbq3zz80x7f84"; depends=[igraph rgeos sp]; }; MTDrh = derive2 { name="MTDrh"; version="0.1.0"; sha256="0ass3b90nr4i0y7v30hk8xhq3hj9bxaxcsr4f8wfi0lnvzfv6aaa"; depends=[]; }; MTE = derive2 { name="MTE"; version="1.0.0"; sha256="009mrl9dgxafl4hrgfzvsfvgx3dljb0rbbs74j2cxc5ray87kp55"; depends=[parcor quantreg]; }; - MTS = derive2 { name="MTS"; version="0.33"; sha256="0i7kpgsw56vvgrdgddn83i9lzjlb72z4llffqai29qq0m1i7hm65"; depends=[fGarch mvtnorm Rcpp]; }; + MTS = derive2 { name="MTS"; version="1.0"; sha256="09pypanjmqrvxbrrckydxyyswsgjx4nhb052x4llk7va9w4lbcjs"; depends=[fBasics fGarch mvtnorm Rcpp]; }; MTSYS = derive2 { name="MTSYS"; version="1.2.0"; sha256="04dkan3hxl3difflskp7d1lw1bvxhg4s28ssy2v4m7z7wbpj3v1m"; depends=[]; }; MTurkR = derive2 { name="MTurkR"; version="0.8.0"; sha256="0q498chr2s67ai7lfxi6kdficqbs5sxj9asyv69z2a37fmsr4va7"; depends=[base64enc curl digest XML]; }; MTurkRGUI = derive2 { name="MTurkRGUI"; version="0.1.5"; sha256="1rlgz80na0v1nx70cda1fzyswlb1lg5kcx64zl9dcqy6accsrpmp"; depends=[curl MTurkR XML]; }; @@ -2079,15 +2176,17 @@ in with self; { MVB = derive2 { name="MVB"; version="1.1"; sha256="0an8b594rknlcz6zxjva6br8f34sgwdi2jil3xh1xzb5fa55dw0f"; depends=[Rcpp RcppArmadillo]; }; MVLM = derive2 { name="MVLM"; version="0.1.4"; sha256="1zcj405dc4jbiqw6p0fcbam8yc9d6yjpmrx5wjw5zjvig3iqb91k"; depends=[CompQuadForm]; }; MVN = derive2 { name="MVN"; version="5.5"; sha256="05jl9g7jyx6a5fc8bw5si393s7f9swygma8h461v8abqbakihb2q"; depends=[boot energy kableExtra magrittr MASS moments mvoutlier nortest plyr psych robustbase]; }; - MVR = derive2 { name="MVR"; version="1.32.1"; sha256="03dbd5nib8cx0rwdi4g9fihbkdxazpvbdjh7sfnavsyyrgnqa31m"; depends=[statmod]; }; + MVNBayesian = derive2 { name="MVNBayesian"; version="0.0.8-11"; sha256="1iaxyp480v91887cn4w3l74907wvbzs3ay4cjgzd8xk2dp47w8bg"; depends=[mvtnorm plyr]; }; + MVR = derive2 { name="MVR"; version="1.33.0"; sha256="1ygz47a2p5r5axql5zsxvsn25pcqyxz6mpw50zfmzrcqdrfa3bg8"; depends=[statmod]; }; MVT = derive2 { name="MVT"; version="0.3"; sha256="0vinlv3d5daf8q7pd9xgs51nxz2njgdba5750vygmv883srlzi9d"; depends=[]; }; MVar = derive2 { name="MVar"; version="2.0.2"; sha256="0h1sm2vzjg86v3sv43pbf9fxjx5d6bxx519aa25y0r27nh9fif5y"; depends=[]; }; MVar_pt = derive2 { name="MVar.pt"; version="2.0.2"; sha256="0b7qgfa180vv2m6l5vqxqc96700srdzzix2kwccfvjimby522a1b"; depends=[]; }; MVisAGe = derive2 { name="MVisAGe"; version="0.2.1"; sha256="1plrzzj7cr2hxk1npadvjnk7sanhilh99l5vrkjjh3l6li2ym09b"; depends=[]; }; MWLasso = derive2 { name="MWLasso"; version="1.3.1"; sha256="11lyk46lmjcd60q0mixi41b8ybjgyp1xi18g3ag4450xyhw3r17s"; depends=[]; }; MWRidge = derive2 { name="MWRidge"; version="1.0.0"; sha256="17kvs9npr1ff24z3pv9x2qnfwyy6w3hc7hm60ynzbjlk2rr11xr9"; depends=[glmnet]; }; - MXM = derive2 { name="MXM"; version="1.3.5"; sha256="0pmv6qya38kxsys39qzdgh7zqjz7i052f25xmqwc5fa4l08jmm6a"; depends=[bigmemory doParallel dplyr energy foreach geepack hash knitr lme4 MASS nnet ordinal quantreg relations Rfast survival visNetwork]; }; + MXM = derive2 { name="MXM"; version="1.4.0"; sha256="1zbmysr2krkyzhnj46lc4grp1ram8axr2lkmwjsk5rv6mc1v2dfn"; depends=[bigmemory coxme doParallel dplyr energy foreach geepack knitr lme4 MASS nnet ordinal quantreg relations Rfast survival visNetwork]; }; MaXact = derive2 { name="MaXact"; version="0.2.1"; sha256="1n7af7kg54jbr09qk2a8gb9cjh25cnxzj2snscpn8sr8cmcrij0i"; depends=[mnormt]; }; + MachineShop = derive2 { name="MachineShop"; version="0.1-1"; sha256="1clina395wf9xfnfql38wmcd2m8mqg8llgraw152flqgq04k9dh4"; depends=[abind foreach ggplot2 Hmisc irr kernlab magrittr MLmetrics ModelMetrics party recipes rsample survival survivalROC]; }; Maeswrap = derive2 { name="Maeswrap"; version="1.7"; sha256="0cnnr5zq7ax1j7dx7ira7iccqppc6qpdjghjarvdb2zj0lf69yyb"; depends=[geometry lattice rgl stringr]; }; MakefileR = derive2 { name="MakefileR"; version="1.0"; sha256="1pfjic2lsar8ghbb6byr4rqrs30qrgfih092z4rxdpsiwkk3y7l1"; depends=[magrittr]; }; Mangrove = derive2 { name="Mangrove"; version="1.21"; sha256="1qf3fjzf0sb6fqbfdbxwbw6wah3gg2qran4mgg13hcmk4n3j0hxp"; depends=[]; }; @@ -2095,7 +2194,7 @@ in with self; { ManlyMix = derive2 { name="ManlyMix"; version="0.1.14"; sha256="0zpcc74965n435d4fah41r9nz0kjyn46hkjl1s0kvlllqj6n69wg"; depends=[]; }; ManyTests = derive2 { name="ManyTests"; version="1.2"; sha256="1mi7wvnkcd95126f1h8vl8skn397yd2zqvcswprqar54p161wgyi"; depends=[]; }; Map2NCBI = derive2 { name="Map2NCBI"; version="1.1"; sha256="19gafyql767f1p4fxdw7d5a8z1b4vg7jfrvzaml5x16fj6c78fjm"; depends=[]; }; - MapGAM = derive2 { name="MapGAM"; version="1.1"; sha256="0sh7qnzzahaz09nmld5p8df93my6k5vpvgmvqdlz84vghcfbfpa2"; depends=[colorspace gam maptools sp survival]; }; + MapGAM = derive2 { name="MapGAM"; version="1.2"; sha256="1909l0b5yf6c0ri8aylarkjmjnh16cjf1a4plc95yrkjk4y0ckvl"; depends=[colorspace gam maptools sp survival]; }; MareyMap = derive2 { name="MareyMap"; version="1.3.4"; sha256="1wap0syzgd0w3xla2x4bcasn8zzlj63r5yyf9r479nvifjxdqxzz"; depends=[tkrplot]; }; MargCond = derive2 { name="MargCond"; version="1.0.0"; sha256="07qh1lgy8ds11cwlb4rxkl6aiph91zq29sy27b8wwxalycdgjrg8"; depends=[gee lme4 MASS Matrix]; }; MarginalMediation = derive2 { name="MarginalMediation"; version="0.5.1"; sha256="1v7ly1yaglyh257b1q4vc7sfrk41lb4ar9dpwf5ppap581pgpz3f"; depends=[boot magrittr purrr]; }; @@ -2113,26 +2212,27 @@ in with self; { Matrix_utils = derive2 { name="Matrix.utils"; version="0.9.7"; sha256="1x64r4aj3gy1dzjjysyrk1j9jq3qsnyrqws8i6bs7q8pf6gvr7va"; depends=[grr Matrix]; }; MatrixCorrelation = derive2 { name="MatrixCorrelation"; version="0.9.2"; sha256="0s4gxgl6fsy0fnjmsdz4k7p96vl6p00xl9w2fg7v0gikjpz6h5bg"; depends=[plotrix pracma progress Rcpp RcppArmadillo RSpectra]; }; MatrixEQTL = derive2 { name="MatrixEQTL"; version="2.2"; sha256="1205jxx5aj783r2dmpawiq4rr30b60fq1qf053i7wylw07pz6vba"; depends=[]; }; - MatrixLDA = derive2 { name="MatrixLDA"; version="0.1"; sha256="19q6wl8fc6jzn7544qnlpzfh9v0xlg9cr78l6k8kx6kzjnbnyh9z"; depends=[glasso plyr Rcpp RcppArmadillo]; }; + MatrixLDA = derive2 { name="MatrixLDA"; version="0.2"; sha256="0fixq35gp0fzmin75sfld2ln0zvnjgzrhk3b5yi7wdqzp99200yy"; depends=[glasso plyr Rcpp RcppArmadillo]; }; MatrixModels = derive2 { name="MatrixModels"; version="0.4-1"; sha256="0cyfvhci2p1vr2x52ymkyqqs63x1qchn856dh2j94yb93r08x1zy"; depends=[Matrix]; }; - MaxPro = derive2 { name="MaxPro"; version="3.1-2"; sha256="1y2g8a8yvzb24dj0z82nzfr6ylplb9sbi2dmj7f3pb4s3yr5zm8y"; depends=[nloptr]; }; + MaxPro = derive2 { name="MaxPro"; version="4.1-2"; sha256="19a2wp93kx1wkbzd5bvljbm1rr96gr14w4fb0ppbgr2y2a4g8i1v"; depends=[nloptr]; }; MaxSkew = derive2 { name="MaxSkew"; version="1.1"; sha256="0x5x0jpvhp189jnmgh6d1h3ya0dicj5qfcrgr2fhp1v8jjhl125m"; depends=[]; }; MaxentVariableSelection = derive2 { name="MaxentVariableSelection"; version="1.0-3"; sha256="1cmxfdkm5k85b4ivlfy5521hkfj0gq2pb1qlxxklh0fprw87kp9c"; depends=[ggplot2 raster]; }; - MazamaSpatialUtils = derive2 { name="MazamaSpatialUtils"; version="0.5.2"; sha256="0k64yzn7qnjxkxxqg5yrgq1ksdp37qfx0yc8a2n1zrdwj9f9ba2i"; depends=[dplyr lubridate rgdal rgeos rmapshaper rvest sp stringr xml2]; }; - MazamaWebUtils = derive2 { name="MazamaWebUtils"; version="0.1.5"; sha256="065l1n2nr5jsc0mdlxj10plzp8m09025hzbd8if3pn6gsl520b6l"; depends=[dplyr futile_logger stringr webutils]; }; + MazamaCoreUtils = derive2 { name="MazamaCoreUtils"; version="0.1.1"; sha256="007m6irbkmgzaraghwg9gq5rv0vhn19dlg2vi02bs1b6h3s63wix"; depends=[dplyr futile_logger lubridate stringr]; }; + MazamaSpatialUtils = derive2 { name="MazamaSpatialUtils"; version="0.5.4"; sha256="0kwwnki9f67ma6dislf0h17c0jrlqm0n8qhfi0w7g129k820i33s"; depends=[dplyr lubridate rgdal rgeos rmapshaper rvest sp stringr xml2]; }; + MazamaWebUtils = derive2 { name="MazamaWebUtils"; version="0.1.7"; sha256="16k6wxwjkdwzx1cqcxpxwaj7i63khly90gyiyfw13di43h8cvsd1"; depends=[dplyr futile_logger lubridate mime stringr webutils]; }; McSpatial = derive2 { name="McSpatial"; version="2.0"; sha256="18nmdzhszqcb5z9g8r9whxgsa0w3g7fk7852sgbahzyw750k95n4"; depends=[lattice locfit maptools quantreg RANN SparseM]; }; Mcomp = derive2 { name="Mcomp"; version="2.8"; sha256="1wz5fr3dhxn4s0qvxm2mzq9dbz3x0vgh6pixjrgk9d4i9w2p7s60"; depends=[forecast ggplot2]; }; MeanShift = derive2 { name="MeanShift"; version="1.1-1"; sha256="02zf27xvk2zlmgxfyl5pwl2rdq8c30fb52x1mbpvlhmxjbhg6fsn"; depends=[wavethresh]; }; MedDietCalc = derive2 { name="MedDietCalc"; version="0.1.0"; sha256="1gggia97ww4kiqhh2lnsmadgdxvpr36mdx1yrbgarj0sp6ilrd3l"; depends=[]; }; MedOr = derive2 { name="MedOr"; version="0.1"; sha256="1rwc14s16lnzgb78ac2017hv9pss7zw7nw3y7vrvq1qx4fgiw6f8"; depends=[]; }; MediaK = derive2 { name="MediaK"; version="1.0"; sha256="19cmxl2wksw9kvjsfn1m4nkr5gpcx6bk0sqrabj1n0dla1l32v2a"; depends=[Rcpp RcppEigen]; }; - Mediana = derive2 { name="Mediana"; version="1.0.6"; sha256="0cx2bkz5m96dirqknfsi9944rhnn14wwdimw1hq1p8c073z40i7a"; depends=[doParallel doRNG foreach MASS mvtnorm survival]; }; + Mediana = derive2 { name="Mediana"; version="1.0.7"; sha256="136yzp8c9yiiw0x8y3ym516sxx36ca3wa945xmhjwkbvz33cc22j"; depends=[doParallel doRNG foreach MASS mvtnorm survival]; }; Mega2R = derive2 { name="Mega2R"; version="1.0.4"; sha256="1c51bway05rqywvw05022cjlqzciidqz9xwz17iwf536gndc348p"; depends=[AnnotationDbi DBI gdsfmt GenomeInfoDb pedgene Rcpp RSQLite SKAT]; }; MendelianRandomization = derive2 { name="MendelianRandomization"; version="0.3.0"; sha256="1nnj4nmzrvdj2arq74bg5ckhmll2z9ydnd75ds48njbhxla2645l"; depends=[ggplot2 iterpc knitr Matrix plotly rmarkdown robustbase]; }; MenuCollection = derive2 { name="MenuCollection"; version="1.2"; sha256="0v3flicfnln9qld150yk3rfldvsr4dllhq80l02n1lq6px38nf2s"; depends=[gplots RGtk2 RGtk2Extras]; }; MergeGUI = derive2 { name="MergeGUI"; version="0.2-1"; sha256="1hx03qv5jyjjmqdvylc3kz5dl5qsdqwlirjbrnxrw7grkgkhygap"; depends=[cairoDevice ggplot2 gWidgetsRGtk2 rpart]; }; MetABEL = derive2 { name="MetABEL"; version="0.2-0"; sha256="0rqjv85mgswrbbp8b8ip6cdmz0cvfy9lm5mcr8a7h38rzgx3g3i3"; depends=[]; }; - MetFns = derive2 { name="MetFns"; version="3.2.0"; sha256="1nm7yv0cl0kl9dn284fja8a9lf77a2xaqv6v53b2f9sravj5pkfv"; depends=[astroFns lubridate plotrix pracma]; }; + MetFns = derive2 { name="MetFns"; version="3.2.2"; sha256="15fd2d0yysibi2x43qv6b8i1pa18l7z4n0zpmrqhsmvqkgy8sla0"; depends=[astroFns lubridate plotrix pracma]; }; MetNorm = derive2 { name="MetNorm"; version="0.1"; sha256="0vfi3k0yp2dz47gwj1n1avs3ji0a2nlrrljz5d0l66zfh4474jb4"; depends=[]; }; MetProc = derive2 { name="MetProc"; version="1.0.1"; sha256="1z6538pij1rq5wv9s8rjcn0sck15y26asv4vamav8a6s4135ia3q"; depends=[fastcluster gplots]; }; MetSizeR = derive2 { name="MetSizeR"; version="1.1"; sha256="11hdmpvnszr6pn9ihb3zjy9miksz1fs4piry153z4dic8pjydkax"; depends=[cairoDevice gWidgets gWidgetsRGtk2 MetabolAnalyze mvtnorm]; }; @@ -2140,14 +2240,15 @@ in with self; { MetaAnalyser = derive2 { name="MetaAnalyser"; version="0.2.1"; sha256="0k58325nb7svihhpga7kdbryr9bi5470qsb8aa5llpiggs8j7sfz"; depends=[DT ggvis rstudioapi shiny]; }; MetaComp = derive2 { name="MetaComp"; version="1.1.2"; sha256="1yb115qdmf5rxmjl4y7qr0i6668n46scs4yjpfq9bmy3w9i4ji1x"; depends=[Cairo data_table dplyr ggplot2 plyr reshape2]; }; MetaCycle = derive2 { name="MetaCycle"; version="1.1.0"; sha256="1kzdk21xpbvwibs8501zwdb9lzj7g5nv2zqaskg9x0szshhg8vpp"; depends=[gnm]; }; - MetaIntegrator = derive2 { name="MetaIntegrator"; version="1.0.3"; sha256="0611k497ixy0f51lmqzs08zqqq5krrxrm7m0xqdl18gkwrw3w656"; depends=[Biobase DBI GEOmetadb GEOquery ggplot2 gplots multtest preprocessCore reshape rmeta Rmisc RMySQL RSQLite stringr]; }; + MetaIntegrator = derive2 { name="MetaIntegrator"; version="2.0.0"; sha256="1hsv1ci0a4gjwbfs1h0lxw5sczpk7hl5ws5016zry26cyvf75gzl"; depends=[AnnotationDbi Biobase boot COCONUT data_table DBI dplyr DT GEOmetadb GEOquery ggplot2 ggpubr gplots HGNChelper magrittr manhattanly Metrics multtest pheatmap plyr pracma preprocessCore readr reshape2 rmarkdown rmeta Rmisc RMySQL ROCR RSQLite snplist stringr zoo]; }; MetaLandSim = derive2 { name="MetaLandSim"; version="1.0.4"; sha256="1dflmm59p4dkrs8iad4b4sc9qcv0x8707irf62mznczlg4mrni4z"; depends=[coda e1071 fgui googleVis igraph knitr maptools minpack_lm raster rgeos rgrass7 sp spatstat zipfR]; }; MetaLonDA = derive2 { name="MetaLonDA"; version="1.1.0"; sha256="0pmbq6f5dqq29h56wsrnq3nyk5s281jc8vh89h2wkbj9djay4bw0"; depends=[caTools DESeq2 doParallel edgeR ggplot2 gss metagenomeSeq plyr]; }; MetaPCA = derive2 { name="MetaPCA"; version="0.1.4"; sha256="14g4v3hyxnds4l2q36mpz282yqg8ahgdw3b0qmj0xg17krrf5l2s"; depends=[foreach]; }; MetaPath = derive2 { name="MetaPath"; version="1.0"; sha256="1vvpfv6yc4rd4apqfs2yzm97xxsv43ghwqnjq6w1xrc4pdx2p634"; depends=[Biobase genefilter GSEABase impute]; }; MetaQC = derive2 { name="MetaQC"; version="0.1.13"; sha256="11595ggjr46z6xiwmhiyx1sydaq68l18y7mgdwxsg81g03ck9x1r"; depends=[foreach iterators proto]; }; MetaSKAT = derive2 { name="MetaSKAT"; version="0.60"; sha256="13qffirv0lnj0bflzjpr2hd0d8j4bkakyfjvicp40f0v4v3cack2"; depends=[SKAT]; }; - MetaSubtract = derive2 { name="MetaSubtract"; version="1.42"; sha256="070j46fp0kb5g9iyd7x4nnaqi1sqxsly3fmka361nzik4pr2x8a3"; depends=[]; }; + MetaStan = derive2 { name="MetaStan"; version="0.0.1"; sha256="1byxgap5ky8z7mi7cpgv1lkm3xpc9g3pgkhcdcazx5sv4dj6rimf"; depends=[BH Rcpp RcppEigen rstan rstantools StanHeaders]; }; + MetaSubtract = derive2 { name="MetaSubtract"; version="1.43"; sha256="15xjlzzjyx581kfr33jkn7gw6pnwrd1j7ic28425wzdigm8ym6h4"; depends=[]; }; MetaboList = derive2 { name="MetaboList"; version="1.2"; sha256="15wkj29s1mxi1wzqzlh8lkr5jkw15dbc37h3hzsc0r72a3ddzf38"; depends=[enviPick]; }; MetaboQC = derive2 { name="MetaboQC"; version="1.0"; sha256="1hm0ndwda1ciyyg8igkpaalvvdyd7aq5wnl9gzza8fr1l9fxp4a2"; depends=[plyr]; }; MetabolAnalyze = derive2 { name="MetabolAnalyze"; version="1.3"; sha256="0cl76x6imx4a95wd74xx5s8i2vg8wq3inqgakvgzmkwxad6qhrqp"; depends=[ellipse gplots gtools mclust mvtnorm]; }; @@ -2160,21 +2261,22 @@ in with self; { MethodCompare = derive2 { name="MethodCompare"; version="0.1.0"; sha256="0zl20v8k8bhn3skbpzdiglywrqghwf0r42q2jn8zmq4x0drvjzpl"; depends=[nlme]; }; Methplot = derive2 { name="Methplot"; version="1.0"; sha256="0aaqss9zfn55qi45jffxkksnkw510npjnkygafx49vl77bkagqh5"; depends=[ggplot2 reshape]; }; MethylCapSig = derive2 { name="MethylCapSig"; version="1.0.1"; sha256="16ch9aldr6a9jn42h387n7qvnzs0yx28f2yj6xq0kp476q7rf4ql"; depends=[geepack]; }; - Metrics = derive2 { name="Metrics"; version="0.1.3"; sha256="1mpqbi1lihxgndfpm8b6c5hiibvnscz1b5xjgi16x2fqk3cz4i0z"; depends=[]; }; + Metrics = derive2 { name="Metrics"; version="0.1.4"; sha256="0fh8qbjlwzagh272lgwr4bxcqcjb1qpz53mgs8rzlvncax6nk5bk"; depends=[]; }; MfUSampler = derive2 { name="MfUSampler"; version="1.0.4"; sha256="0i5siq1jacxbfvakb97qnj3h7pk471rrx8ckwm0d8nl3j586s36y"; depends=[ars coda HI]; }; MiRAnorm = derive2 { name="MiRAnorm"; version="1.0.0"; sha256="154wv0j82xyc4y5cd2czh0q8kzhgrk6qsn0ahc1zn3fnrzc9fgz0"; depends=[ArgumentCheck cluster dendextend ggplot2 MASS npmv plyr reshape2]; }; MiRKAT = derive2 { name="MiRKAT"; version="1.0.1"; sha256="1adhy9ysjm8xa45sb4x17ryznvg91c9xdf0irpcgc7rbg34rxf5x"; depends=[GUniFrac MASS PearsonDS survival]; }; MiRSEA = derive2 { name="MiRSEA"; version="1.1"; sha256="0jpl6ws5yx1qjzdnip9a37nmvx81az4cbsjm57x613qjpwmg6by3"; depends=[]; }; MiSPU = derive2 { name="MiSPU"; version="1.0"; sha256="1l6q0fm5z5i6gigr940h8kc5rka08psmhcprp8grmsxk3qy2kply"; depends=[ape aSPU cluster Rcpp RcppArmadillo vegan]; }; MiST = derive2 { name="MiST"; version="1.0"; sha256="0gqln792gixqfh201xciaygmxbafa0wyv5gpbg9w5zkbbv44wrfk"; depends=[CompQuadForm]; }; - MicSim = derive2 { name="MicSim"; version="1.0.12"; sha256="186m0p08h6x8zhk82sm1hsyrqdl3p872xn03ysv3g5bldglc9677"; depends=[chron rlecuyer snowfall]; }; + MicSim = derive2 { name="MicSim"; version="1.0.13"; sha256="16j2ffl6379afhk9dx7z2lci79ywq1nhmjk070kfknlrabl8cs2n"; depends=[chron rlecuyer snowfall]; }; MicroDatosEs = derive2 { name="MicroDatosEs"; version="0.8.2"; sha256="0k0hmi3ciipizmgjw1i5rrsg34yx21s1msn40vc4qc9s1n4wd8dl"; depends=[readr]; }; MicroMacroMultilevel = derive2 { name="MicroMacroMultilevel"; version="0.4.0"; sha256="1q5cyqr4hdl1wp2isk6p4p084i83kg6hd406wdp1nj9lv5i0xvgw"; depends=[]; }; MicroStrategyR = derive2 { name="MicroStrategyR"; version="1.0-1"; sha256="0a6bk0wnwx8zy9081n7wb12lidgckrhn350r0q5m6aa82l6l8ihi"; depends=[gWidgetsRGtk2]; }; MigClim = derive2 { name="MigClim"; version="1.6"; sha256="171pnalidyw0v2fcjdc3kyrq5kg035kwj5xl8zwgn3hlanpaljvp"; depends=[raster SDMTools]; }; MindOnStats = derive2 { name="MindOnStats"; version="0.11"; sha256="13995v4n0hfb53w02jk81pl7nazkvqwwv87y1sr99jr9ppzc08mz"; depends=[]; }; Miney = derive2 { name="Miney"; version="0.1"; sha256="0sgln0653rgglinr8rns5s2az0lgyp9slmynyhhhs265grkhrfj0"; depends=[]; }; - Miso = derive2 { name="Miso"; version="0.1.1"; sha256="151klf07k5f670ssclg6bba18vfamyclz1sq3x0l9bzdvkng0lak"; depends=[S4Vectors]; }; + Minirand = derive2 { name="Minirand"; version="0.1.0"; sha256="0iahhshqxpkxhpchb4hiv7d9rir2d3zxazs2nz7ymzdlhnn41xi1"; depends=[]; }; + Miso = derive2 { name="Miso"; version="0.1.5"; sha256="1d36rnacw3rrjbrk4h0jlg13qk5d9lw77axbypbk5ng4wk47bcdp"; depends=[dplyr plotly S4Vectors]; }; MissMech = derive2 { name="MissMech"; version="1.0.2"; sha256="1b7i1balfl1cqr3l4l4wxlahk2gmawzv9rhyibwzf0yp60cb1sv9"; depends=[]; }; MissingDataGUI = derive2 { name="MissingDataGUI"; version="0.2-5"; sha256="0drbm87ka17avg6fmswjilgnz9c3azwd0236s8yfms24k9k77vnd"; depends=[cairoDevice GGally ggplot2 gWidgetsRGtk2 reshape]; }; MitISEM = derive2 { name="MitISEM"; version="1.2"; sha256="0dn398vrxh16gmy7ghh5000dgk7cbhb3gi3myrxp5dfri3ysjxcj"; depends=[mvtnorm]; }; @@ -2194,37 +2296,40 @@ in with self; { MixtureInf = derive2 { name="MixtureInf"; version="1.1"; sha256="12qcflmrpzh4w5b40xq5qicks6p0cwqpf5k84pwabkjb168afddv"; depends=[quadprog]; }; MixtureRegLTIC = derive2 { name="MixtureRegLTIC"; version="1.0.0"; sha256="052gyk4gqv49fa2rxbxnib29f1vjxiw4q8llkfhsv8kw5pw38699"; depends=[]; }; MlBayesOpt = derive2 { name="MlBayesOpt"; version="0.3.3"; sha256="0aazcf94gckgxd51r21hv3msa18br5xcq8xp03w448di546qzbnn"; depends=[data_table dplyr e1071 foreach Matrix ranger rBayesianOptimization rlang xgboost]; }; - MmgraphR = derive2 { name="MmgraphR"; version="0.2"; sha256="0al65hsqpak44w5zvdzhyh6l1q981lzyvx37hbcy0z0qn3vz16kn"; depends=[colorspace march TraMineR]; }; - MoEClust = derive2 { name="MoEClust"; version="1.1.0"; sha256="1442x2ajiib1fgj6bc3zlqy9q3bjnhnn29f7fjin99lq7c5r132p"; depends=[lattice matrixStats mclust mvnfast nnet vcd]; }; + MmgraphR = derive2 { name="MmgraphR"; version="0.3-1"; sha256="0nfv2cax2v2zhsbprwykngq5n6i5qcf8189rci9d48d5k9qm4a5r"; depends=[colorspace march msm TraMineR]; }; + MoEClust = derive2 { name="MoEClust"; version="1.2.0"; sha256="1is0k96czjqfr9z9kajz1qfqpa7b38pi1lyngzrj6y1hhgfrxywk"; depends=[lattice matrixStats mclust mvnfast nnet vcd]; }; MoLE = derive2 { name="MoLE"; version="1.0.1"; sha256="0bq19vwqjn5hl4mw5imkydbp39gal992vnh2dwrq8bb8cmj3qh91"; depends=[]; }; MoTBFs = derive2 { name="MoTBFs"; version="1.0"; sha256="09ymfgw6psc1y0dczvsrsw5cki58wn0d8vj56ydfylrxn24g3jfq"; depends=[bnlearn lpSolve quadprog]; }; Mobilize = derive2 { name="Mobilize"; version="2.16-4"; sha256="16vdvpwspa0igb52zvzyk0if9l4wq1hm8y42572i8sh1m82wyyfs"; depends=[ggplot2 Ohmage reshape2 wordcloud]; }; ModelGood = derive2 { name="ModelGood"; version="1.0.9"; sha256="1y99a7bgwx167pncxj00lbw3cdjj23fhhzl8r24hwnhxr984kvzl"; depends=[prodlim]; }; - ModelMap = derive2 { name="ModelMap"; version="3.3.5"; sha256="1rmm1a2nw91kzvxpvq9qhlag0dhihis7mgscgslqia6z8fr86qvs"; depends=[corrplot fields HandTill2001 mgcv PresenceAbsence randomForest raster rgdal]; }; - ModelMetrics = derive2 { name="ModelMetrics"; version="1.1.0"; sha256="119xxmzb5biq7k1yxqsf0jmmarmfn6lds9x9hfgv593xlpym6za8"; depends=[Rcpp]; }; + ModelMap = derive2 { name="ModelMap"; version="3.4.0.1"; sha256="1279k5hznxrb6fq4zd1baw1pm5dj5437g5awkgb8kp7ll8raa2ql"; depends=[corrplot fields HandTill2001 mgcv PresenceAbsence randomForest raster rgdal]; }; + ModelMetrics = derive2 { name="ModelMetrics"; version="1.2.0"; sha256="1sgdyrf6fbsn18gk8slir4a1yhv133kfhyg2crfs759nff4aw89h"; depends=[data_table Rcpp]; }; Modelcharts = derive2 { name="Modelcharts"; version="0.1.0"; sha256="1jy78kyyh4r13px2d5bm7fra5bkcpimzfji0hmydspkfi3qla37x"; depends=[dplyr plotly]; }; Modeler = derive2 { name="Modeler"; version="3.4.3"; sha256="1k2zwky0i15kypa9mdqc51qipah6pf1zgkrb6xc76xsavjyacfjm"; depends=[class ClassComparison ClassDiscovery e1071 neuralnet nnet oompaBase randomForest rpart TailRank]; }; MomTrunc = derive2 { name="MomTrunc"; version="1.41"; sha256="0az499xzvnczqnbh4g3h5jyz8isq0zdw0x654haac6v6045f5xav"; depends=[matrixcalc mvtnorm]; }; Momocs = derive2 { name="Momocs"; version="1.2.9"; sha256="13pgn31hv529z33mi020w8wm8ya7hyi5yfsp45a78wdhinqas9mm"; depends=[ape dplyr geometry geomorph ggplot2 jpeg magrittr MASS progress RColorBrewer rgeos sp]; }; Mondrian = derive2 { name="Mondrian"; version="1.0-0"; sha256="07r64q518diphai951pw4vfaw4sd6bqwhi6q5cp4pcl3aqjynkmj"; depends=[RColorBrewer]; }; MonetDB_R = derive2 { name="MonetDB.R"; version="1.0.1"; sha256="1r7vki0rrzwcrfg4f2lfx30g614vf2xi62qb1rs21a9j5741lxlx"; depends=[codetools DBI digest]; }; - MonetDBLite = derive2 { name="MonetDBLite"; version="0.5.1"; sha256="01gcwr5r47dkmr1y2q387xv1qr2fryq9574aijx1a39ywhvcm8pq"; depends=[codetools DBI digest]; }; + MonetDBLite = derive2 { name="MonetDBLite"; version="0.6.0"; sha256="1nwjnl40lmpykgjrhq39yldd7dn7xncg7gfcjczza680v47wxgj2"; depends=[codetools DBI digest]; }; MonoInc = derive2 { name="MonoInc"; version="1.1"; sha256="14rykw3bfj0vznz0rw4vsg1k4vanfv9cy867vspw966ncl4bw70h"; depends=[compare doParallel foreach iterators sitar]; }; MonoPhy = derive2 { name="MonoPhy"; version="1.2"; sha256="0997kg8hfwgsc9s155z0wrf7rrhn3vf6681j9psjl3hsspg08z2r"; depends=[ape phangorn phytools RColorBrewer taxize]; }; MonoPoly = derive2 { name="MonoPoly"; version="0.3-9"; sha256="130hv05fwsskk1bvr7fk8bmafq26vimkfgssjdk3zaz0hm3pxrp4"; depends=[quadprog]; }; MonteCarlo = derive2 { name="MonteCarlo"; version="1.0.5"; sha256="0a62wq448kq10mf1nhdr0nybzzz7d63nxakggpzmkzz4fz0l67bd"; depends=[abind codetools reshape rlecuyer snow snowfall]; }; Morpho = derive2 { name="Morpho"; version="2.6"; sha256="11v0lv1mfyp252y20jxlr9bym3rh8mcr2v25qhvq1133jr420lyd"; depends=[colorRamps doParallel foreach MASS Matrix Rcpp RcppArmadillo rgl Rvcg]; }; MorseGen = derive2 { name="MorseGen"; version="1.2"; sha256="1kq35n00ky70zmxb20g4mwx0hn8c5g1hw3csmd5n6892mbrri8s9"; depends=[]; }; - MortCast = derive2 { name="MortCast"; version="1.2-0"; sha256="1lmkqywcb3acfmbknxpl62n87rv4qz7hq2kyl98x8l62w6swabr6"; depends=[wpp2017]; }; - MortalityLaws = derive2 { name="MortalityLaws"; version="1.4.0"; sha256="1440fhwhmg72q7nv3cpnb658vhlkz586i17h82jjwr4v63almq8m"; depends=[minpack_lm pbapply RCurl]; }; + MortCast = derive2 { name="MortCast"; version="1.2-1"; sha256="13g78q9165b6528pflrfrcay5fl151jy13497g9xcr7dxkjr8ms9"; depends=[wpp2017]; }; + MortalityGaps = derive2 { name="MortalityGaps"; version="1.0.0"; sha256="0nfm8xa7gnshrl8hsvmvr3za8nbppp7f7i5h4ni204w7xwvh8jxc"; depends=[crch forecast MASS pbapply]; }; + MortalityLaws = derive2 { name="MortalityLaws"; version="1.6.0"; sha256="0jn9gs17a5l83w5plwmiqssffjag470xx98ff1sq7ijn9ra513ih"; depends=[minpack_lm pbapply RCurl tidyr]; }; MortalitySmooth = derive2 { name="MortalitySmooth"; version="2.3.4"; sha256="1clx8gb8jqvxcmfgv0b8jyvh39yrmcmwr472j9g3ymm95m4hr8fq"; depends=[lattice svcm]; }; MortalityTables = derive2 { name="MortalityTables"; version="1.0"; sha256="07pbjgc4qvznw1rfvmz6ndg0gzj0k61iajwn51ijpb7hscwi8937"; depends=[ggplot2 scales]; }; MotilityLab = derive2 { name="MotilityLab"; version="0.2-5"; sha256="080j548sp1c4yqqd7p7zgr70j1xyrw3fgjj1f521sgh84x5h2hbc"; depends=[ellipse]; }; MplusAutomation = derive2 { name="MplusAutomation"; version="0.7-2"; sha256="0hy6g0fgidjpz7mn1qwwdnhyxjm0v2g9r3fl32zmkvix3852qx1r"; depends=[boot coda digest ggplot2 gsubfn lattice pander plyr texreg xtable]; }; + Mqrcm = derive2 { name="Mqrcm"; version="1.0"; sha256="1z8zyjvjz1izaal5y6dnlm86pvydab45d9qnhcnibi2l9r1ladkc"; depends=[Hmisc pch]; }; MsdeParEst = derive2 { name="MsdeParEst"; version="1.7"; sha256="1zhi1jr30sl7jpsw37lc3akfzixlhm9k2hjkha1pjy5fmd5lddlx"; depends=[MASS moments mvtnorm sde]; }; + MtreeRing = derive2 { name="MtreeRing"; version="1.1"; sha256="1linz553ffmi1qhamxnj5znffpqxm8g0wgliwggjvkwrp3lqwgqx"; depends=[bmp dplR imager jpeg magick magrittr measuRing png shiny shinydashboard shinyWidgets spatstat tiff]; }; MuChPoint = derive2 { name="MuChPoint"; version="0.6.1"; sha256="15bqsc7bsjg55qxjwxh58bxbwz61a6wv4xxph994g4020b98l01x"; depends=[capushe Matrix Rcpp shiny]; }; MuFiCokriging = derive2 { name="MuFiCokriging"; version="1.2"; sha256="09p8wdmlsf21ibqyjigwdipcin3ij0naxcd035hqgfj76v20wiyv"; depends=[DiceKriging]; }; - MuMIn = derive2 { name="MuMIn"; version="1.40.4"; sha256="1xw7b74qg0ivgk3l1krjn2wrl969c41hr0y2nk0z8fw94xcfggyr"; depends=[Matrix]; }; + MuMIn = derive2 { name="MuMIn"; version="1.42.1"; sha256="1g0pp8g9d3cfk2n0g4rd3lvwg4gsqshdk1nzwb5m041iyl5j8zps"; depends=[Matrix nlme]; }; MuViCP = derive2 { name="MuViCP"; version="1.3.2"; sha256="1wkiwdz4bblxf1zr57khljqkga9ks9aj1lnidvmhib94q6b8fnf4"; depends=[gtools MASS sm]; }; MullerPlot = derive2 { name="MullerPlot"; version="0.1.2"; sha256="0am5brdmbh2mw74fbw9nha6h4qlhj8psg3142mql1ad99bd0zg4w"; depends=[RColorBrewer]; }; MultAlloc = derive2 { name="MultAlloc"; version="1.2"; sha256="0c3sqfaa08s8mk4yz77kh6q6v9ic5xp52g9prfw1k2kv4nw1k2qd"; depends=[Rglpk]; }; @@ -2232,6 +2337,7 @@ in with self; { MultNonParam = derive2 { name="MultNonParam"; version="1.2.6"; sha256="1w9kp7qswz38r2xfi8sc52kc52c8hi2jzjsh8gj4491ds1lilv0r"; depends=[]; }; MultiBD = derive2 { name="MultiBD"; version="0.2.0"; sha256="1qjfr8hx8sr5m8370yzi09r8jnh3i6907wzj3v4h83vmjh81db71"; depends=[BH Rcpp RcppParallel]; }; MultiCNVDetect = derive2 { name="MultiCNVDetect"; version="0.1-1"; sha256="0mfisblw3skm4y8phfg4wa0rdchl01wccarsq79hv63y78pfhh13"; depends=[]; }; + MultiFit = derive2 { name="MultiFit"; version="0.1.2"; sha256="0nyjyjznpl902mv9f05xzgh2y3ckv28zlp1wf87hpigly7491nyz"; depends=[data_table Rcpp RcppArmadillo]; }; MultiGHQuad = derive2 { name="MultiGHQuad"; version="1.2.0"; sha256="00prkn5awxrh365j1jz312har1x4p8v52a0sqfy00pqr44ncmqqq"; depends=[fastGHQuad Matrix mvtnorm]; }; MultiLCIRT = derive2 { name="MultiLCIRT"; version="2.11"; sha256="1qls0qp5fz377h50lvpzq3vkw49i3nvizli98gss50nqci8ssqm4"; depends=[limSolve MASS]; }; MultiMeta = derive2 { name="MultiMeta"; version="0.1"; sha256="0gj0wk39fqd21xjcah20jk16jlfrcjarspbjk5xv74c9k4p5gmak"; depends=[expm ggplot2 gtable mvtnorm reshape2]; }; @@ -2243,7 +2349,7 @@ in with self; { MultiVarMI = derive2 { name="MultiVarMI"; version="1.0"; sha256="1mlaprg3cfmfwrq7wh64fmyv1wpdnil7wpcrcg3921qydk65py6z"; depends=[BinOrdNonNor corpcor CorrToolBox Matrix moments norm PoisNonNor]; }; MultiVarSel = derive2 { name="MultiVarSel"; version="1.1.2"; sha256="07qdi43bg03xyr99361c0565m1i5kzqjbvlc2npnyjyc2ygr386d"; depends=[glmnet Matrix tidyverse]; }; MultinomialCI = derive2 { name="MultinomialCI"; version="1.0"; sha256="0ryi14d102kvxawls04hcw50n79jkcn29ill77lkfvj6nlzj8i5q"; depends=[]; }; - MultipleBubbles = derive2 { name="MultipleBubbles"; version="0.1.0"; sha256="1g6yqp53dbd96jcjgmif39zb3a7f9zil10dhqi3vz3qv6r2vsnkj"; depends=[foreach MASS]; }; + MultipleBubbles = derive2 { name="MultipleBubbles"; version="0.2.0"; sha256="047a1pql3jf500gwlap6ws5z7mx0sqmdq6jbql24nl5iypi9jqpf"; depends=[foreach MASS]; }; MultiplierDEA = derive2 { name="MultiplierDEA"; version="0.1.18"; sha256="1d7cqa44yayyhwkl5wkp68b7vxakfnlwkprs811z8c2fmfm8vk5r"; depends=[lpSolveAPI]; }; MultisiteMediation = derive2 { name="MultisiteMediation"; version="0.0.2"; sha256="1z9nh8iywlsjsrrmpm6h8hcnaqvh93dldn5rhp4wnj3c7db8qscy"; depends=[ggplot2 lme4 MASS psych statmod]; }; MultivariateRandomForest = derive2 { name="MultivariateRandomForest"; version="1.1.5"; sha256="0mww4x1hqraiyvmw2f9s6h180kplmj36hb7zfg7xlkmgdf4apk8d"; depends=[bootstrap Rcpp]; }; @@ -2253,14 +2359,14 @@ in with self; { Myrrixjars = derive2 { name="Myrrixjars"; version="1.0-2"; sha256="1hhfg83z5kl6l250z3lippx3qc68k1wj1qlfzd6m66rgmk699gyl"; depends=[rJava]; }; NADA = derive2 { name="NADA"; version="1.6-1"; sha256="1jjlm6rljk4nv6b7l2w3xnj31j61wq30sp5pnna8wav6gyjqjfmb"; depends=[survival]; }; NAEPprimer = derive2 { name="NAEPprimer"; version="1.0.1"; sha256="19p1livdnayfcl88f8r9x1vg30x522q8lgx66pfgwpkxjzvrqa2l"; depends=[]; }; - NAM = derive2 { name="NAM"; version="1.6.1"; sha256="1cyi5vc2ppwfd7bixm21cyy4z9alcx2dz316zgwnc5n3jy0wdb81"; depends=[randomForest Rcpp]; }; + NAM = derive2 { name="NAM"; version="1.6.4"; sha256="0b5dcjcn8qg9lmjfr33n8y0c67iv2yvqk0wascl71hgphqrcypm4"; depends=[randomForest Rcpp]; }; NAPPA = derive2 { name="NAPPA"; version="2.0.1"; sha256="0nn4wgl8bs7sy7v56xfif7i9az6kdz9xw7m98z1gnvl2g7damvn3"; depends=[NanoStringNorm plyr]; }; NB = derive2 { name="NB"; version="0.9"; sha256="1gh42z7lp6g09fsfmikxqzyvqp2874cx3a6vr96w43jfwmgi2diq"; depends=[]; }; NB_MClust = derive2 { name="NB.MClust"; version="1.1.1"; sha256="0hzmrszxgx3pylf9pjjwk2ryjhwz7naxxkhcqpnfjv337vv5dg0i"; depends=[MASS]; }; NBDdirichlet = derive2 { name="NBDdirichlet"; version="1.3"; sha256="1657mqwn5i1b0g0gva387zl02vpymn98f71b0p7i7xv033mqnpqw"; depends=[]; }; NBLDA = derive2 { name="NBLDA"; version="0.99.0"; sha256="1fd6f43yhwvdb81r0b9hpmna5bphhqcgwiwjkpdyqz4h9cdmsj21"; depends=[ggplot2 sSeq]; }; NBPSeq = derive2 { name="NBPSeq"; version="0.3.0"; sha256="0l4ylxhs2k9ww21jjqs67fygk92avdchhx2y1ixzl7yr2yh1y9by"; depends=[qvalue]; }; - NCA = derive2 { name="NCA"; version="2.0"; sha256="08951mmmpziljclwzmbni1s5a62wr9s80iyfsr07gkdz4sx3cvqf"; depends=[gplots KernSmooth quantreg sfa]; }; + NCA = derive2 { name="NCA"; version="3.0.1"; sha256="11ajnhx840z5122ir2ijxcwqyr535acq4dnp7mah4h1y45krfdms"; depends=[ggplot2 gplots KernSmooth lpSolve progress quantreg sfa]; }; NCSampling = derive2 { name="NCSampling"; version="1.0"; sha256="0bv93xffnzvbip86b3pg7apxzh3410mxff77q119m0z7f6vm3fam"; depends=[lattice randomForest yaImpute]; }; NCmisc = derive2 { name="NCmisc"; version="1.1.5"; sha256="1dq38ac97l8b6ys3yxqnndbrp8fa8zfw0lr4nq2421sn91769w22"; depends=[proftools]; }; NCutYX = derive2 { name="NCutYX"; version="0.1.0"; sha256="0r2ghnvrbya3p1d8rb5bsnz5v852vvc6rq65yafn2xzr7886wrg2"; depends=[fields glmnet MASS mvtnorm Rcpp RcppEigen]; }; @@ -2272,16 +2378,16 @@ in with self; { NHANES = derive2 { name="NHANES"; version="2.1.0"; sha256="0aphv3rakfcfrv2km1xyxpj1bxiazy6gwrvs7lyhxmq468fk4c9a"; depends=[]; }; NHEMOtree = derive2 { name="NHEMOtree"; version="1.0"; sha256="0ycprj2rz2fy6a7ps0bsr27iphmbfxi9pbvl8rcr6p8yagfb84mb"; depends=[emoa partykit rpart sets]; }; NHLData = derive2 { name="NHLData"; version="1.0.0"; sha256="0dfqalccbkmqrn3h1z6s78l818c8sqn7d6yc8mg872ygmszryci7"; depends=[]; }; - NHMSAR = derive2 { name="NHMSAR"; version="1.7"; sha256="14jc0zfl39yn7vkprcnv80mk1i4vp8w4wk7nz6f34cf473xbf49d"; depends=[caTools glasso lars ncvreg ucminf]; }; - NHPoisson = derive2 { name="NHPoisson"; version="3.1"; sha256="1gr682kxgw227yqw9w0iw9lrijsz5iszhnfk0mdhi6m1w9s28kcn"; depends=[car]; }; + NHMSAR = derive2 { name="NHMSAR"; version="1.12"; sha256="034cjzbwyf5jkj24wf9s6dij7g416psd2iz7fjrg34q9ax2kzyyl"; depends=[glasso lars ncvreg ucminf]; }; + NHPoisson = derive2 { name="NHPoisson"; version="3.2"; sha256="0k6m6ampp7g95d0jm5msvrgc12rqirpanb1ykbdf1ii027pqpwsn"; depends=[car]; }; NIPTeR = derive2 { name="NIPTeR"; version="1.0.2"; sha256="0ll6amqyw33a93xiccihidrnbaqlx1q7kqcd4wks7cvqawd8pgv1"; depends=[Rsamtools S4Vectors sets]; }; NIRStat = derive2 { name="NIRStat"; version="1.0"; sha256="1hi8201zslp1f7m3jci8q03y3f1zlcck2x3i793l7lsyl7qbzd1z"; depends=[ggplot2 gridExtra mgcv]; }; NISTnls = derive2 { name="NISTnls"; version="0.9-13"; sha256="03a1c8a5dr5l5x4wbclnsh3vmx3dy7migfdzdx7d7p3s7hj3ibif"; depends=[]; }; NISTunits = derive2 { name="NISTunits"; version="1.0.1"; sha256="0km9l3k9p35sb1qrhrz4ijjsdihvsp6j7cz5kh46lgf7nn6xdk7a"; depends=[]; }; NITPicker = derive2 { name="NITPicker"; version="1.0.0"; sha256="0dls638mjkl8qnfx6gnzfa2ba8w6wcnq7np8lmvp9kw7fkqxnslb"; depends=[fda fda_usc fdasrvf]; }; - NLMR = derive2 { name="NLMR"; version="0.3.0"; sha256="0cqs48jy9ydivjpmx76dyxxdhh3lww7qrmx5s8jcsxxxnn93lq8m"; depends=[checkmate dplyr fasterize purrr RandomFields raster sf spatstat tibble]; }; - NLP = derive2 { name="NLP"; version="0.1-11"; sha256="15v50gxzmpqx49wzkwxfpb5xjpg9y829a0ifys372kf1cfj521aq"; depends=[]; }; - NLPutils = derive2 { name="NLPutils"; version="0.0-4"; sha256="1dqbf8xmrzx81ybmp5qkd5a5rw3c19l2wxfnpddij4a1n074bwym"; depends=[NLP qdap SnowballC]; }; + NLMR = derive2 { name="NLMR"; version="0.3.2"; sha256="09z0spxr8wh06qmbnypqll87fhv9i0vyamqv26dcdhhrhgmidg56"; depends=[checkmate dplyr fasterize RandomFields raster sf spatstat tibble]; }; + NLP = derive2 { name="NLP"; version="0.2-0"; sha256="0xbhkrnxcbf322jfw31xcn4y2gnk5y7ccq1bz4h3prf44h0whr7w"; depends=[]; }; + NLPutils = derive2 { name="NLPutils"; version="0.0-5"; sha256="1jxxly85iajzb9qckkkar0przyxv005cyvry0qi5dkzhbyl5k490"; depends=[NLP qdap SnowballC]; }; NLRoot = derive2 { name="NLRoot"; version="1.0"; sha256="1x8mcdgqqrhyykr12bv4hl4wbh1zw2qgpnd2yrm68kb92iy95rh4"; depends=[]; }; NMF = derive2 { name="NMF"; version="0.21.0"; sha256="1qq25n3k5sgh3srlshb3ic6q92s12c1ilqf5cd5anvq6cqfchc1v"; depends=[cluster colorspace digest doParallel foreach ggplot2 gridBase pkgmaker RColorBrewer registry reshape2 rngtools stringr]; }; NMFN = derive2 { name="NMFN"; version="2.0"; sha256="0n5fxqwyvy4c1lr0glilcz1nmwqdc9krkqgqh3nlyv23djby9np5"; depends=[]; }; @@ -2296,21 +2402,22 @@ in with self; { NORMT3 = derive2 { name="NORMT3"; version="1.0-3"; sha256="041s0qwmksy3c7j45n4hhqhq3rv2hncm2fi5srjpwf9fcj5wxypg"; depends=[]; }; NORRRM = derive2 { name="NORRRM"; version="1.0.0"; sha256="06bdd5m46c8bbgmr1xkqfw72mm38pafxsvwi9p8y7znzyd0i6ag3"; depends=[ggplot2 SDMTools]; }; NORTARA = derive2 { name="NORTARA"; version="1.0.0"; sha256="1q4dmn5q939d920spmxxw08afacs3pzhr2gzwyqa5kn8xiz4ffg8"; depends=[corpcor Matrix]; }; - NPBayesImpute = derive2 { name="NPBayesImpute"; version="0.6"; sha256="09cs6nj1pw4wv4w8bd1c4rilidzx12ymjzah9d0c412bwv0gmdyl"; depends=[Rcpp]; }; NPC = derive2 { name="NPC"; version="1.1.0"; sha256="06y6vdln5zyinq9bsp66yz6i1v5bkw9pa2hknl9brwc75z359apn"; depends=[coin dplyr matlab permute]; }; NPCD = derive2 { name="NPCD"; version="1.0-10"; sha256="1ag7j1r9j3piisg706hyhq8vaqfqvm1blxpkfxx7r1impjyqzyai"; depends=[BB R_methodsS3 R_oo]; }; NPCirc = derive2 { name="NPCirc"; version="2.0.1"; sha256="1pyckjvf4vzns9hxnhnk7cm4abllmdj3f142pvjhnilyqwndqgyc"; depends=[circular misc3d movMF plotrix rgl shape]; }; NPHMC = derive2 { name="NPHMC"; version="2.2"; sha256="000x9y00gfkaj5lf00a55b9qx15x05yp3g3nmp8slyzsnfv66p5d"; depends=[smcure survival]; }; - NPMLEcmprsk = derive2 { name="NPMLEcmprsk"; version="2.1"; sha256="1v15ylgflbdr03pgh55fan1l6mymd1d5n6h9jhbcqahjlcsxkwq3"; depends=[]; }; + NPMLEcmprsk = derive2 { name="NPMLEcmprsk"; version="3.0"; sha256="0nm88fsxgrfk0j0lmir57bhxy4p8ah503gpj6jdlvjqw862jigiq"; depends=[]; }; NPMOD = derive2 { name="NPMOD"; version="0.1.0"; sha256="1m3rfgyxdbyr0m5vznav5qk70ch45wz3dc8wccxjcxrcfkn8i18k"; depends=[BSDA clinfun gWidgets nortest pspearman readxl rlang RVAideMemoire]; }; NPMVCP = derive2 { name="NPMVCP"; version="1.1"; sha256="13jpm46abwziq8859jhl6hg1znk3ws1q7g4vlr2jyri3qa6h22dd"; depends=[]; }; NPS = derive2 { name="NPS"; version="1.1"; sha256="02idja149a2sj97sks4lhsaflpifyxi6n0rjlcq9993f84szfgsi"; depends=[]; }; NPflow = derive2 { name="NPflow"; version="0.13.1"; sha256="0sq47frh665m8mibif1w3i2z5pb577v1ngdjirbya0a9chpmwc3s"; depends=[ellipse fastcluster ggplot2 gplots pheatmap Rcpp RcppArmadillo reshape2 truncnorm]; }; NPsimex = derive2 { name="NPsimex"; version="0.2-1"; sha256="1k9i1f5ckvzdns8f5qnm2zq7qs3wsgzsnfwdz21zmhmi6d0pwchm"; depends=[]; }; + NRejections = derive2 { name="NRejections"; version="1.0.0"; sha256="103cs5hlqqk4s5h63lmrqdvajgxwy6ffn3mvy0ayd0n0arppr9ry"; depends=[doParallel foreach matrixcalc mvtnorm StepwiseTest]; }; NSA = derive2 { name="NSA"; version="0.0.32"; sha256="0lnimyx3fpnw9zfhqm7y3ssvbpmvbmhcqy6fp83862imiwpl8i5r"; depends=[aroma_affymetrix aroma_core DNAcopy MASS matrixStats R_methodsS3 R_oo R_utils]; }; NSM3 = derive2 { name="NSM3"; version="1.12"; sha256="0spkzx2zm8q85h7ij9r52bsqlwgw2fsc7zw3aaz8644q0xlnjnvj"; depends=[agricolae ash binom BSDA coin combinat epitools fANCOVA gtools Hmisc km_ci MASS metafor nortest np partitions quantreg Rfit SemiPar SuppDists survival waveslim]; }; NSUM = derive2 { name="NSUM"; version="1.0"; sha256="1as4g3v7qlk9wxlpwhg293980jq9gy6qay77bbcrjf481gvkkbp6"; depends=[MASS MCMCpack]; }; NScluster = derive2 { name="NScluster"; version="1.2.0"; sha256="04mn9lh4cl1hkz27z7ldqnfwmrvqi7m1zrvscpywdcilpjmcryv0"; depends=[]; }; + NTsets = derive2 { name="NTsets"; version="1.0"; sha256="08qzrfd8yp6w8ysp2nvqpnc9y7zxws90gplm2y5ajpv0vjjg66gm"; depends=[fBasics gWidgets gWidgetsRGtk2 nortest RGtk2 RGtk2Extras tseries]; }; NUCOMBog = derive2 { name="NUCOMBog"; version="1.0.4.2"; sha256="0s6gm3adc9qdh94pxzgccbxx1f1lbgqyvd4xk37xp6f3b5hwljdz"; depends=[snowfall]; }; NameNeedle = derive2 { name="NameNeedle"; version="1.2.4"; sha256="1f8hmabwafjmgx2z381a3m84zfrd0s9x51haa4c1phq41yfq2lm5"; depends=[]; }; NanoStringNorm = derive2 { name="NanoStringNorm"; version="1.2.1"; sha256="05r1hvrxwi2mcq3pv6b699291qg120ijad96s5dah2f6cwx7gm7j"; depends=[gdata vsn XML]; }; @@ -2324,33 +2431,37 @@ in with self; { NetComp = derive2 { name="NetComp"; version="1.6"; sha256="11rxpdihn575diqfvc7yvxhlr2c19fig4v4a5c6jhqyfdsd60fsv"; depends=[gdata]; }; NetData = derive2 { name="NetData"; version="0.3"; sha256="1jf05zwy0c6gmm7kvxlwvai61bz4wpsw7cl0h4i21ipzn1rqxmqj"; depends=[]; }; NetIndices = derive2 { name="NetIndices"; version="1.4.4"; sha256="0ydivbri8l8zkxi18ghj9h66915scyhca8i9mcyq4b06mjfigss8"; depends=[MASS]; }; - NetLogoR = derive2 { name="NetLogoR"; version="0.3.3"; sha256="1msln8k3rllsb414c35pw90bral039vijjrfhd7xzk9267jcv7vk"; depends=[abind car CircStats data_table Hmisc matrixStats plyr quickPlot raster rgeos sp SpaDES_tools]; }; + NetLogoR = derive2 { name="NetLogoR"; version="0.3.4"; sha256="0vsbd650mfqwqqhsd1h92yfwc3rrirr2m29ffv8a9cwppmhkmfqp"; depends=[abind car CircStats data_table Hmisc matrixStats plyr quickPlot raster rgeos sp SpaDES_tools]; }; NetOrigin = derive2 { name="NetOrigin"; version="1.0-3"; sha256="162dhyx7z1nd3z14lfvm3dz0qwwvrc3n17zswbnwcfj6g1b1p2f1"; depends=[colorspace Hmisc igraph]; }; NetPreProc = derive2 { name="NetPreProc"; version="1.1"; sha256="0r51dqymf2nqm86py4zwdlf7qf120j0bg9r6a9c0gsyyijh4z40p"; depends=[graph]; }; NetRep = derive2 { name="NetRep"; version="1.2.1"; sha256="0adlnq22nslp8ildbrf0z26783kzgz4cyn45a981qyjbw4c42hin"; depends=[abind BH foreach RColorBrewer Rcpp RcppArmadillo RhpcBLASctl statmod]; }; NetSwan = derive2 { name="NetSwan"; version="0.1"; sha256="1mwdy3ahagiifj2bd1ajrafvnxzi74a1x1d3i2laf1hqpz3fbgld"; depends=[igraph]; }; NetWeaver = derive2 { name="NetWeaver"; version="0.0.2"; sha256="0wsmz7db8q2fycz6rfbbfs67ccj857y9zs4d80k1gnqazgj5whkn"; depends=[]; }; - NetworkChange = derive2 { name="NetworkChange"; version="0.3"; sha256="1brpa6fhmrgafmk1iw19g0pppwxi0ld0nyhx9c0fgnkn9m82isjk"; depends=[abind ggplot2 ggvis LaplacesDemon MASS MCMCpack mvtnorm RColorBrewer Rmpfr]; }; + NetworkChange = derive2 { name="NetworkChange"; version="0.4"; sha256="0vl0w7f34fxh32gi521hzyd0a47q7l9fyn53d1g5bsl5w5l9bym1"; depends=[abind ggplot2 ggvis LaplacesDemon MASS MCMCpack mvtnorm plyr RColorBrewer Rmpfr tidyr]; }; NetworkComparisonTest = derive2 { name="NetworkComparisonTest"; version="2.0.1"; sha256="09fqlnpdibf9jr5mw2pzmwi66f6cjz8rmm8jay0cv2bami7jhy2a"; depends=[IsingFit IsingSampler qgraph reshape2]; }; - NetworkDistance = derive2 { name="NetworkDistance"; version="0.1.0"; sha256="0k11crn1wiisw4qrc2yidrhdvscx59skqy4ckxdiykpb1jh5a7s4"; depends=[doParallel foreach igraph Matrix network Rcpp RcppArmadillo Rdpack RSpectra]; }; + NetworkDistance = derive2 { name="NetworkDistance"; version="0.3.0"; sha256="1s406jj0hg7aijacwcvp5li5lvdsiiba2vg5qmkdlgmvxw8zb3q8"; depends=[doParallel foreach igraph Matrix network pracma Rcpp RcppArmadillo Rdpack RSpectra]; }; NetworkExtinction = derive2 { name="NetworkExtinction"; version="0.1.0"; sha256="1scza639kf3zzz2yd9q31wsvxpvpq8hbx82a206jkxlxb4dq6vxr"; depends=[broom dplyr ggplot2 magrittr network scales sna tidyr]; }; + NetworkInference = derive2 { name="NetworkInference"; version="1.2.3"; sha256="1l30xs7342cyczk7vnnhrz8ngbl1j7y9icvyfabvi9zj87rw788q"; depends=[assertthat checkmate ggplot2 ggrepel Rcpp RcppProgress]; }; NetworkRiskMeasures = derive2 { name="NetworkRiskMeasures"; version="0.1.2"; sha256="0c10nahybjd1n0yr78ynbsdnkfa0p7kz6dx3rbwxwsp3x4mrcd6y"; depends=[dplyr expm ggplot2 Matrix]; }; - NetworkToolbox = derive2 { name="NetworkToolbox"; version="1.1.2"; sha256="1wgiwbackqwdis1mw3nyrv3wgi8c8s49cl16f8l46yn7763nkskf"; depends=[corrplot doSNOW fdrtool foreach igraph IsingFit MASS Matrix ppcor psych pwr qgraph R_matlab]; }; - NeuralNetTools = derive2 { name="NeuralNetTools"; version="1.5.1"; sha256="1dsjv0vm45skw74x1fz3gd7g6p52ayfwz85bh92j29mfxbnacbnn"; depends=[ggplot2 nnet reshape2 scales tidyr]; }; + NetworkToolbox = derive2 { name="NetworkToolbox"; version="1.2.1"; sha256="08a2kk8gmgawr18n38z95imaf82lp453b8dam3nn1hsa3abl5c95"; depends=[corrplot doParallel fdrtool foreach igraph MASS Matrix ppcor psych pwr qgraph R_matlab]; }; + NeuralNetTools = derive2 { name="NeuralNetTools"; version="1.5.2"; sha256="0d73rbp8v0k0j8dp4yigan7krhglx6qfbadvyg7nsj67xc00vbfd"; depends=[ggplot2 nnet reshape2 scales tidyr]; }; Newdistns = derive2 { name="Newdistns"; version="2.1"; sha256="1b5njkzj8b0wrvvfv904di0933k9d320gadmfm5zl6pzdp34bh1i"; depends=[AdequacyModel]; }; NightDay = derive2 { name="NightDay"; version="1.0.1.1"; sha256="1gwwxk428gkvci4dhfb3zikvidalpqkl0q2r6qpm58c12j14jk1h"; depends=[maps]; }; Nippon = derive2 { name="Nippon"; version="0.7.1"; sha256="1nw0kaqw5my2bx7i82q4j2qlsmc95kgjnbm9r9np3swhq6wizrmq"; depends=[stringr]; }; NipponMap = derive2 { name="NipponMap"; version="0.2"; sha256="0jk3zz05vhximbbm15h7ngb0ffxp5w8zhisifipkdgvg1hpi7pb7"; depends=[sf tibble]; }; + NitrogenUptake2016 = derive2 { name="NitrogenUptake2016"; version="0.2.3"; sha256="13mh63z3x8yqd31v5a4d10bhzk4y67ac38flwk2msv7qcx37sny6"; depends=[car MASS zoo]; }; NlcOptim = derive2 { name="NlcOptim"; version="0.5"; sha256="0chrf9ac3x1a0b86lf6wjzdsjcv5n08rav88b7xf4c31lflf1rd1"; depends=[MASS quadprog]; }; - NlinTS = derive2 { name="NlinTS"; version="1.3.2"; sha256="1isr6ci6dsbbx804y3hc8aqvhggfs7ix5yiz32dby69i85b6lj5a"; depends=[Rcpp Rdpack timeSeries]; }; + NlinTS = derive2 { name="NlinTS"; version="1.3.5"; sha256="0ihpkyzzd2k5izm84kynj211n8p3qym9hka86bzs3gm256j54q01"; depends=[Rcpp Rdpack timeSeries]; }; NlsyLinks = derive2 { name="NlsyLinks"; version="2.0.6"; sha256="1kdqifwjkkk4x1ixg3ca6lbqx79ab907nnzwxca5iw721mbk5njg"; depends=[lavaan]; }; + Nmisc = derive2 { name="Nmisc"; version="0.3.3"; sha256="1dy9m8sfrns6mnk8j79ma71dmgvanl6jsj7sykyn7pijjfazw1zq"; depends=[dplyr magrittr purrr rappdirs rlang stringr tibble]; }; NoiseFiltersR = derive2 { name="NoiseFiltersR"; version="0.1.0"; sha256="0y90si8f5hsi273g10hw700r72la30hwqlwg59gaq76wqlkm8j0p"; depends=[caret e1071 kknn MASS nnet randomForest rJava rpart RWeka]; }; NominalLogisticBiplot = derive2 { name="NominalLogisticBiplot"; version="0.2"; sha256="0m9442d9i78x57gdwyl3ckwp1m6j27cam774zkb358dw5nmwxbmz"; depends=[gmodels MASS mirt]; }; - NonCompart = derive2 { name="NonCompart"; version="0.4.3"; sha256="14wvr17p0dza11p97vmjcn27l73vmw5ms3gbrgxcxm33ybwya63n"; depends=[]; }; + NonCompart = derive2 { name="NonCompart"; version="0.4.4"; sha256="0m62jwp572z7gn4rykyr47b6cfi4sy9hxxghhlkjdclkxw7bjxx9"; depends=[]; }; NonpModelCheck = derive2 { name="NonpModelCheck"; version="3.0"; sha256="13qk2wbgpdf763q5xg29p2hxwqpml23pcgxrzmx12vnapnqfh71k"; depends=[dr]; }; - Nonpareil = derive2 { name="Nonpareil"; version="3.3.1"; sha256="0ldl90h499wwm992cj71phf3ryqvjnq0ygarcxf7h85krr4j3sx2"; depends=[]; }; + Nonpareil = derive2 { name="Nonpareil"; version="3.3.3"; sha256="02w4qxgg3snl32p41c4vg5ip7pmqcn0k3c753k5mvz41ln821sj5"; depends=[]; }; NormExpression = derive2 { name="NormExpression"; version="0.1.0"; sha256="1j4q8mb70ig40acfd9kfy12vxdvq3qpf53rxh47kkw8mywnd0449"; depends=[]; }; NormPsy = derive2 { name="NormPsy"; version="1.0.8"; sha256="13w4xjdjjg9mzmfaflc0gp306kazyvxshpj4vnl6gym3vpi9qax8"; depends=[lcmm]; }; + NormalBetaPrime = derive2 { name="NormalBetaPrime"; version="1.1"; sha256="1sik3iqwqy3wgvxip6nz4gsxh27zpmgfzvpd2251bvc870j09a9w"; depends=[GIGrvg glmnet MASS Matrix pracma pscl]; }; NormalGamma = derive2 { name="NormalGamma"; version="1.1"; sha256="0r3hhfscif0sx9v8f450yf119gpvf3ilpb8n3ziy4v4qf2jlcfnk"; depends=[histogram optimx]; }; NormalLaplace = derive2 { name="NormalLaplace"; version="0.2-0"; sha256="11z568zhb7jw9ghp6wlyf26ijm25crc5pqhzw71qgvva42nsmmwn"; depends=[DistributionUtils GeneralizedHyperbolic]; }; NormalizeMets = derive2 { name="NormalizeMets"; version="0.25"; sha256="0hnyr2aklibbvs6b6q4l0zbb9g8qmp2ds4lqic8a9alqn66sfnf2"; depends=[AUC crmn e1071 GGally ggplot2 htmlwidgets impute knitr limma plotly rmarkdown]; }; @@ -2371,10 +2482,9 @@ in with self; { OGI = derive2 { name="OGI"; version="1.0.0"; sha256="0qw55jamkvdf3vfa5c0ygbymbs4d9q15dihiqz691hdfnyjvc2mk"; depends=[lpSolve]; }; OHPL = derive2 { name="OHPL"; version="1.3"; sha256="0hm229nyv96s3sjljn5rwh89g1n6wsf24qm3ll5ccb0q2pcwnd7r"; depends=[glmnet mvtnorm pls]; }; OIdata = derive2 { name="OIdata"; version="1.0"; sha256="078khxrszwnrww2h0ag153bf59fnyhirxy4m56ssgr2gmfahaymf"; depends=[maps RCurl]; }; - OIsurv = derive2 { name="OIsurv"; version="0.2"; sha256="148mpjj5navc1vrl72y87krn4lf3awnd32z3g4qqaia404w5w7p7"; depends=[KMsurv survival]; }; OLScurve = derive2 { name="OLScurve"; version="0.2.0"; sha256="1zqapfwgwy9rxnbhmlgplkphw1bdia4cyi9q6iwcppw3rjw75f1n"; depends=[lattice]; }; ONETr = derive2 { name="ONETr"; version="1.0.3"; sha256="14l56qcmyyk2ivcfkfv7j2k4i1mfrngpi9zcc88w6xfhz5qlb548"; depends=[plyr RCurl XML]; }; - OOBCurve = derive2 { name="OOBCurve"; version="0.2"; sha256="1dr2mp2wi2dir1h5w3rw17154byfy3gx02x2kz1r67l9dfgrr505"; depends=[mlr randomForest ranger]; }; + OOBCurve = derive2 { name="OOBCurve"; version="0.3"; sha256="1i7prybs3b60ipl34zrq6mcr6w9kc1d44b14mxcd752k42k6xs2r"; depends=[mlr randomForest ranger]; }; OOR = derive2 { name="OOR"; version="0.1.2"; sha256="1zw7g0365znyn828qqsn83l2a837wwj9cx7dzcbns28vhqmsn6hm"; depends=[]; }; OOmisc = derive2 { name="OOmisc"; version="1.2"; sha256="09vaxn5czsgn6wpr27lka40kzd76jzqgqxavf26ms3m9kkdf83g4"; depends=[]; }; OPDOE = derive2 { name="OPDOE"; version="1.0-10"; sha256="04z944i4f3i0cjnxh32wf7n2dfyynnvkz4lxdkn90flam2np58yv"; depends=[crossdes gmp mvtnorm nlme orthopolynom polynom]; }; @@ -2385,6 +2495,7 @@ in with self; { ORIClust = derive2 { name="ORIClust"; version="1.0-1"; sha256="1biddddyls2zsg71w4innxl0ckfb80q2j9pmd56wvbc0qnbm0w3q"; depends=[]; }; ORMDR = derive2 { name="ORMDR"; version="1.3-2"; sha256="0y7b2aja3zvsd6lm7jal9pabcfxv16r2wh0kyzjkdfanvvgk3wmm"; depends=[]; }; OSCV = derive2 { name="OSCV"; version="1.0"; sha256="17wrfak6b6m2l3iqbhdwcfh0rlqb14rkvrbari7v46gya9v7hq20"; depends=[mc2d]; }; + OSDR = derive2 { name="OSDR"; version="1.1"; sha256="0wwyqsvni3szbmq953bhxld4172jp1knr2farw06b0bbdglx3q7w"; depends=[]; }; OSMscale = derive2 { name="OSMscale"; version="0.5.1"; sha256="0rjhyhh1iafgd9h1pbd2clyg2sh0gg7y1aqmiislqyn6h6jrvgqn"; depends=[berryFunctions OpenStreetMap sp]; }; OSTSC = derive2 { name="OSTSC"; version="0.0.1"; sha256="0p92w25xvajsn44rd5hg1m7l9l4m0rpmw175nnqr438432hqh7cc"; depends=[doParallel doSNOW fields foreach MASS]; }; OTE = derive2 { name="OTE"; version="1.0"; sha256="18w483syhs523yfib9sibzmj16bypqxk4sc4771kfr1958h3igai"; depends=[randomForest]; }; @@ -2397,10 +2508,11 @@ in with self; { OceanView = derive2 { name="OceanView"; version="1.0.4"; sha256="072gjbka7ncp5sa463kbi06fjx7nm1ljgzpx4b7ybq9pcwvnyzz6"; depends=[plot3D plot3Drgl rgl shape]; }; Ohit = derive2 { name="Ohit"; version="1.0.0"; sha256="132d4drc2phw9ppxnczb1ycdg3dv085k8p6bcaj3v866j0hfxjgb"; depends=[]; }; Ohmage = derive2 { name="Ohmage"; version="2.11-4"; sha256="14pga59ikiywyl6xnfd2d8sy323vyn88q9sf101bcwp0s0qczwzg"; depends=[RCurl RJSONIO]; }; - OjaNP = derive2 { name="OjaNP"; version="0.9-9"; sha256="12a7zfrk3rdvfby5qa511w3nk5jpnsd5gg2z46b5s97rxb3qq7za"; depends=[ICS ICSNP Rcpp]; }; + OjaNP = derive2 { name="OjaNP"; version="0.9-10"; sha256="1kljbnwky6b9d6sakarhw6ckrjbrpw117d81ykgl5z7l4p6cvvsh"; depends=[ICS ICSNP Rcpp]; }; OligoSpecificitySystem = derive2 { name="OligoSpecificitySystem"; version="1.3"; sha256="17mspf1ph2ybv046zckykfdcbrsiz40hrs6ib5mpwkfnrvsp1w7l"; depends=[tkrplot]; }; OmicKriging = derive2 { name="OmicKriging"; version="1.4.0"; sha256="08frr38yf5d0l3zwkbq9465xrbyzsn8sx9icqc3yvfnxrkhrpzig"; depends=[doParallel foreach irlba ROCR]; }; OmicsPLS = derive2 { name="OmicsPLS"; version="1.1.0"; sha256="16q226y8wshjdry538w6zk116rip97hr5bfjyz8g960gy40pjn6j"; depends=[ggplot2]; }; + Omisc = derive2 { name="Omisc"; version="0.1.0"; sha256="1dii0hr9sbza0vgxqgr3mzsbmx8b5189x9qi4is8zkn5nsl78pk8"; depends=[MASS psych]; }; OnAge = derive2 { name="OnAge"; version="1.0.1"; sha256="1zby5sf92c185b5m19jv4ndgbv6mz107nc47zn1d6bijrypzpc20"; depends=[]; }; Oncotree = derive2 { name="Oncotree"; version="0.3.3"; sha256="147rc9ci66lxbb91ys2ig40sgmldi15p604yysrd4ccbxpbk2zwf"; depends=[boot]; }; OneArmPhaseTwoStudy = derive2 { name="OneArmPhaseTwoStudy"; version="1.0.3"; sha256="0q8g33s1jq0ipvwq83xhrly8idsh68licgyivxc628zbm1id5p38"; depends=[Rcpp]; }; @@ -2409,13 +2521,14 @@ in with self; { OpVaR = derive2 { name="OpVaR"; version="1.0.5"; sha256="14kq95i8n0g1wy3s32llw3803qzkxlyz9307clc1bwzi0wp22x5f"; depends=[actuar evmix goftest MASS pracma ReIns tea truncnorm vcd VineCopula]; }; OpasnetUtils = derive2 { name="OpasnetUtils"; version="1.3"; sha256="0mmn4dpk1wl8slg55xzhpk7jdwhkrka53rwmrsr73sikkh3mcyfn"; depends=[digest ggplot2 httpRequest igraph plyr RCurl reshape2 rgdal rjson sp triangle xtable]; }; OpenCL = derive2 { name="OpenCL"; version="0.1-3"; sha256="0f7vis0jcp0nh808xbzc73vj7kdcjb0qqzzsh3gvgamzbjfslch8"; depends=[]; }; - OpenImageR = derive2 { name="OpenImageR"; version="1.0.8"; sha256="1j7p1wrzznrisbzw8j1qsxyyv3zr5hk6q9yxw97y6lrfh3c26ig1"; depends=[jpeg png Rcpp RcppArmadillo shiny tiff]; }; + OpenImageR = derive2 { name="OpenImageR"; version="1.1.1"; sha256="0g2s3qgzbfmz89qiybflzqxsx60n9rr3718vg155hg117xnchr5c"; depends=[jpeg png R6 Rcpp RcppArmadillo shiny tiff]; }; OpenML = derive2 { name="OpenML"; version="1.8"; sha256="04m2gi35hykqs4iy3ipvi41cmkv8vg145cpafjrsf98kj7jg4pmv"; depends=[backports BBmisc checkmate curl data_table digest httr jsonlite memoise mlr ParamHelpers stringi XML]; }; OpenMPController = derive2 { name="OpenMPController"; version="0.2-5"; sha256="00hs8v47pr2d726z8izkfrgmayw147hdm16rr9rw1zs3ad216zjj"; depends=[]; }; - OpenMx = derive2 { name="OpenMx"; version="2.9.9"; sha256="02p125r83r63zjysd94s1wvmxp1gh38dpqs3r8ly5qzdx5jzk5yf"; depends=[BH digest MASS Matrix Rcpp RcppEigen rpf StanHeaders]; }; + OpenMx = derive2 { name="OpenMx"; version="2.11.5"; sha256="19vsy1dc25jix0jxysdwbgsv0d8yv1p62jzvv8zvrwapk0rfyy0z"; depends=[BH digest MASS Matrix Rcpp RcppEigen rpf StanHeaders]; }; OpenRepGrid = derive2 { name="OpenRepGrid"; version="0.1.12"; sha256="02p9b2y99z9yrrm2pl86p0yqwah0yjic2wdcd4k0mhccimmmkaip"; depends=[abind colorspace GPArotation openxlsx plyr psych pvclust rgl stringr XML]; }; OpenStreetMap = derive2 { name="OpenStreetMap"; version="0.3.3"; sha256="099vdyq0vw9xl5v7zggdb8yd4zl7x8imvvbj5j2f5hrspgg131pz"; depends=[ggplot2 raster rgdal rJava sp]; }; Opportunistic = derive2 { name="Opportunistic"; version="1.2"; sha256="0kaj11ziij1v65l972x4kbr7vzkx4dwa27ymabiip4dg57a976wr"; depends=[]; }; + Opt5PL = derive2 { name="Opt5PL"; version="0.1.1"; sha256="0v3ibfzmkfnkhxylhaqcd3yqygsk7027ga12vb6gj4h4zcccf17f"; depends=[matrixcalc Rcpp]; }; OptGS = derive2 { name="OptGS"; version="1.1.1"; sha256="1acwwjng5ri5vganv7b5pagp7524ifr0q8h1pbfb5g6z3x6w08kh"; depends=[]; }; OptHedging = derive2 { name="OptHedging"; version="1.0"; sha256="0g7qaf5abvbcqv2h1dciwn3gwpz084ryqjjk0yabdm4ym0y38ddm"; depends=[]; }; OptInterim = derive2 { name="OptInterim"; version="3.0.1"; sha256="1ks24yv5jjhlvscwjppad27iass59da1mls99hlif0li9mvkbvyk"; depends=[clinfun mvtnorm]; }; @@ -2442,9 +2555,9 @@ in with self; { OutrankingTools = derive2 { name="OutrankingTools"; version="1.0"; sha256="0z7pslkkinn7flc4xwjg0bsfswf8ad4jv9rmglaj3fmjcx9b6wgj"; depends=[igraph]; }; OxyBS = derive2 { name="OxyBS"; version="1.5"; sha256="11l3gm0jvw993jb13f6kpv77m6z0d1jswscma2v28qzkw053r3dc"; depends=[]; }; P2C2M = derive2 { name="P2C2M"; version="0.7.6"; sha256="07ycl22v03b2xdaw4v0l6layqhab431ma38qywzm96hkl3ywvl49"; depends=[ape ggplot2 rPython stringr]; }; - PAC = derive2 { name="PAC"; version="1.0.10"; sha256="0cr34vjd6dr5jkbv1hhd7ln35ih8h62fmz2q8h2plbxaww88zcjf"; depends=[dplyr ggplot2 ggrepel igraph infotheo parmigene Rcpp Rtsne]; }; + PAC = derive2 { name="PAC"; version="1.1.0"; sha256="03xwrnb540487xmai34mgjvwi67szp03vmczv0aq410m6g08p5m9"; depends=[dplyr ggplot2 ggrepel igraph infotheo parmigene Rcpp Rtsne]; }; PACBO = derive2 { name="PACBO"; version="0.1.0"; sha256="1v3j5bgvf0wh8s4d2yyz0fkc3acdwjlicwnbh1r241b1742x79cb"; depends=[mnormt]; }; - PAFit = derive2 { name="PAFit"; version="1.0.0.4"; sha256="178hxn376q911kc6nsbkbgi7s26nhw5clzv7iiq6c7ns6dg7npr7"; depends=[igraph knitr magicaxis mapproj MASS network networkDynamic plyr RColorBrewer Rcpp VGAM]; }; + PAFit = derive2 { name="PAFit"; version="1.0.0.7"; sha256="0yr5d7286c6k885lrh5445q5vwsl1nkgag2zwixyavk606nr5ldm"; depends=[igraph knitr magicaxis mapproj MASS network networkDynamic plyr RColorBrewer Rcpp VGAM]; }; PAGI = derive2 { name="PAGI"; version="1.0"; sha256="01j1dz5ihqslpwp9yidmhw86l112l7rfkswmf03vss872mpvyp3f"; depends=[igraph]; }; PAGWAS = derive2 { name="PAGWAS"; version="2.0"; sha256="0bz47ivd32kx1amgqllqbxyyvj773q7wasgk924hmibabiixa8nx"; depends=[foreach lars mnormt]; }; PANDA = derive2 { name="PANDA"; version="0.9.9"; sha256="1sf3c49v4mb3mz2imqlqdbh1iab7bc2pxpi8bmgj2jld133555ip"; depends=[cluster GO_db]; }; @@ -2461,6 +2574,7 @@ in with self; { PBIBD = derive2 { name="PBIBD"; version="1.3"; sha256="0zh73bsiwmsqw1vhs2dazndsf0894kfv3vfv88wr4fnh7njysz6r"; depends=[]; }; PBImisc = derive2 { name="PBImisc"; version="1.0"; sha256="18gjp66q6l0w6vsgm6d5sjgpa906z1gyyp6yf58lq5vyg1bnfmcl"; depends=[lme4 Matrix]; }; PBNPA = derive2 { name="PBNPA"; version="0.0.3"; sha256="1wmgcmspilfv6pjy7696j2xmq8m41p27plnr1qr0fnzyz66pf37m"; depends=[metaRNASeq]; }; + PBRF = derive2 { name="PBRF"; version="1.0.0"; sha256="1ibwywgbxnxcb3z2kl2bgh7fz512nhgy2zcdym67asp76c6rkqg6"; depends=[]; }; PBSadmb = derive2 { name="PBSadmb"; version="0.68.104"; sha256="01akimdsp0bkvz3a5d75yyy3ph0mff85n8qsnr59fla5b5cm4qlj"; depends=[PBSmodelling]; }; PBSddesolve = derive2 { name="PBSddesolve"; version="1.12.2"; sha256="12pl95mcak88524s8zvk9dzib2g40fwaz6iz7igx9wg6vib9d1sj"; depends=[]; }; PBSmapping = derive2 { name="PBSmapping"; version="2.70.5"; sha256="15h28lb0zriaf4020l3a069plrklbvbg5x231r5fqflshj6v8a9f"; depends=[]; }; @@ -2477,27 +2591,30 @@ in with self; { PCIT = derive2 { name="PCIT"; version="1.5-3"; sha256="0gi28i2qd09pkaja4w7abcl7sz43jnk98897vc2905fnk9nks65j"; depends=[]; }; PCMRS = derive2 { name="PCMRS"; version="0.1-1"; sha256="10n4am4qm23aaghf8awv2llcq7392s62yr6mf5h8nf18hfz29wrn"; depends=[cubature ltm mvtnorm Rcpp RcppArmadillo statmod]; }; PCPS = derive2 { name="PCPS"; version="1.0.6"; sha256="0mihkivlpycqbzc3z8clsmiqg3c6hqnapk29h794lf99had03hp8"; depends=[ape phylobase picante RcppArmadillo SYNCSA vegan]; }; - PCRedux = derive2 { name="PCRedux"; version="0.2.6-1"; sha256="0pirra4fx2s4ks34ng7fc2vjcmzym3ffpld901glf8hppycsgf6c"; depends=[bcp caret changepoint chipPCR ecp fda_usc FFTrees magrittr MBmca pbapply plotly pracma qpcR randomForest robustbase testthat visdat zoo]; }; + PCRedux = derive2 { name="PCRedux"; version="0.2.6-4"; sha256="0nya5fx06mic7knfkzddny9lxqwk039kz0d3mf32rixwlbhrdlr5"; depends=[bcp caret changepoint chipPCR ecp fda_usc FFTrees magrittr MBmca pbapply plotly pracma qpcR randomForest robustbase testthat visdat zoo]; }; PCS = derive2 { name="PCS"; version="1.2"; sha256="0488h6s1yz6fwiqf88z2vgckn6i0kwls8cazmpw3wspnaqvl2n4s"; depends=[multtest statmod]; }; PCSinR = derive2 { name="PCSinR"; version="0.1.0"; sha256="1z8yjryw3c43vc6fxcwiindmyq6r63pc1zr3aybwmys6mv697bb4"; depends=[]; }; PCovR = derive2 { name="PCovR"; version="2.7"; sha256="00920h0qlw81vwh46inmvm4mdv0dfd8xvqvrj7l038hhmjb7qsjz"; depends=[GPArotation MASS Matrix ThreeWay]; }; + PDFEstimator = derive2 { name="PDFEstimator"; version="0.1-0"; sha256="1apw4q8x6x2hv0s5b57s667xv1k51lgqlb61xvvkfgzawvwc6x4p"; depends=[]; }; PDM = derive2 { name="PDM"; version="0.1"; sha256="1pbdy13ji9c6krgh2r1qgrzmf4hdmrdzylsr71n3hh5jq4n9xg8x"; depends=[jpeg]; }; PDN = derive2 { name="PDN"; version="0.1.0"; sha256="082ydvwcjc2rs7hlakrkgbbm9c419m408a14a9dgfdwm16yif3jd"; depends=[ggplot2 glmnet network survival]; }; PDQutils = derive2 { name="PDQutils"; version="0.1.6"; sha256="0mmfi0ifwbkjm0274sddpwkj27cvdkwngnka8vdmfm4b2nn7vgsp"; depends=[moments orthopolynom]; }; PDSCE = derive2 { name="PDSCE"; version="1.2"; sha256="17lc6d8ly6jbvjijpzg45dvqrzrh5s1sp415nycazgpbg9ypwr2h"; depends=[]; }; PEGroupTesting = derive2 { name="PEGroupTesting"; version="1.0"; sha256="1z863ard0cc2g8ibxnmxhiqhvs53r6b8gpnavnfchm9432ifcbwi"; depends=[]; }; PEIP = derive2 { name="PEIP"; version="2.2-1"; sha256="0bzynmd7azs33994dlsabxp29lncs1v2njp6iy5l62rwrnxj9y0a"; depends=[bvls fields geigen Matrix pracma RSEIS]; }; + PELVIS = derive2 { name="PELVIS"; version="1.0.4"; sha256="0gw4bxck9fvkpbqls3rj0lwjcnw7i2x3f5whiglhd712j2m63ayq"; depends=[MASS shiny]; }; PEMM = derive2 { name="PEMM"; version="1.0"; sha256="18dd9hsbdrnhrrff7gpdqrw2jv44j8lg0v3lkcdpbd4pppcaq84h"; depends=[]; }; PET = derive2 { name="PET"; version="0.5.1"; sha256="1gdq7ai8hgl9h53b72j7sfk09l7yr2b84pdy9bl1z3x8zxbsp8br"; depends=[adimpro]; }; PGEE = derive2 { name="PGEE"; version="1.5"; sha256="1qcxbqnbpplnfjy83nm9fj9y4abzgbxnsggzx7ix3vb9qs18cdwh"; depends=[MASS mvtnorm]; }; PGM2 = derive2 { name="PGM2"; version="1.0-1"; sha256="03282pcq7gw47awc2mxjsbz6w3zpqjhqd7fzg8la4p00cd0vvmr4"; depends=[]; }; PGRdup = derive2 { name="PGRdup"; version="0.2.3.3"; sha256="1s0v44922zpxl3w9kzn9xzvs5jldg35gjrnlf89f89i3rs59gg98"; depends=[data_table ggplot2 gridExtra igraph stringdist stringi]; }; PHENIX = derive2 { name="PHENIX"; version="1.3.1"; sha256="1gd9ycrwawi81al4f5v559km1112giwqnwvvk8ynj4kdb5bqpyq4"; depends=[ppcor SuppDists]; }; + PHEindicatormethods = derive2 { name="PHEindicatormethods"; version="1.0.8"; sha256="0ihsll6lkmg152z0r4gcckkz4f8j2vhrdiy6c7j6s4dk84s0nfcp"; depends=[dplyr rlang]; }; PHYLOGR = derive2 { name="PHYLOGR"; version="1.0.10"; sha256="17q760k5519alr2skvpnghz3c9jgw07lh5fpw4xf6hjk3qlqq82c"; depends=[]; }; - PHeval = derive2 { name="PHeval"; version="0.5.3"; sha256="1zq4ks6w5vrhy1f170fv16zgrgi1lfxmkpfkg75sjin7asw4i7a9"; depends=[survival]; }; + PHeval = derive2 { name="PHeval"; version="0.5.4"; sha256="06fy5dm4mnp29f01163rw1d1hyl7rlcp4pfw18s87ckpr931qyma"; depends=[survival]; }; PIGE = derive2 { name="PIGE"; version="1.1"; sha256="0pc24rvvxzpgrsx7xsj98n5vd462hjggakzwp36qdkib69yyr4bn"; depends=[ARTP snowfall survival xtable]; }; PIGShift = derive2 { name="PIGShift"; version="1.0.1"; sha256="115dnsh4b1rxx1d2kc8x3vl5366h5f0i6gg8l1w3v0f8309qigis"; depends=[ape mvtnorm]; }; - PINSPlus = derive2 { name="PINSPlus"; version="1.0.1"; sha256="02yxv1x06p6vr50g4amj4wwjlk04wadic74d1wpkxxg69zpv35lz"; depends=[cluster doParallel entropy foreach pbmcapply]; }; + PINSPlus = derive2 { name="PINSPlus"; version="1.0.2"; sha256="0awwrrrs6vfdprlc91116qa1jsqwizf7xwhwygsi2wqx9qhsxk96"; depends=[cluster doParallel entropy foreach pbmcapply]; }; PIPS = derive2 { name="PIPS"; version="1.0.1"; sha256="1c5v3s6xys9p1q32k6mpsffhi9gwsq951rh12hs76dmak862yspc"; depends=[]; }; PK = derive2 { name="PK"; version="1.3-4"; sha256="1zkjq64p34gzbsbmbdqphssnplzz65wpl486qf4yhawnb4wnkj1v"; depends=[]; }; PKI = derive2 { name="PKI"; version="0.1-5.1"; sha256="1xs3jxbczhkxnp7cyw2yh1jcwha92y9pdsbka1ligbla70bnvxyj"; depends=[base64enc]; }; @@ -2514,40 +2631,42 @@ in with self; { PLordprob = derive2 { name="PLordprob"; version="1.1"; sha256="1g23h3121g9csr85falm6vgzbva42wz3skhfr2rxmvlc3ca4afyp"; depends=[mnormt]; }; PMA = derive2 { name="PMA"; version="1.0.11"; sha256="1v8h66l602zd74mw73ygsy667nqg8p0k0wqhbsjl1imafl207s5d"; depends=[impute]; }; PMCMR = derive2 { name="PMCMR"; version="4.3"; sha256="09bvdj2h1086r2cgy3myrhlylplxxlliv8nwx09c8kb1vn02i2ij"; depends=[]; }; - PMCMRplus = derive2 { name="PMCMRplus"; version="1.2.0"; sha256="13gn16k6gg7fv9rjx5bf6q3zfx3499s52m5k59n053nr4i5d8215"; depends=[BWStest gmp kSamples MASS multcompView mvtnorm Rmpfr SuppDists]; }; - PMmisc = derive2 { name="PMmisc"; version="0.1.0"; sha256="12nw64x88cb1amqgdpcdmkiwcg3vs3kdlxlz0kw7frwgaw3l0l06"; depends=[robust]; }; - PNADcIBGE = derive2 { name="PNADcIBGE"; version="0.4.1.1"; sha256="038xylgq3mp1nl5rf11swprv08khvzfw0jg5bmd0yvqmygr082jq"; depends=[dplyr magrittr RCurl readr readxl survey timeDate]; }; + PMCMRplus = derive2 { name="PMCMRplus"; version="1.4.0"; sha256="1x3x2fhbihjfipkwdykqfb1i70dgj1wy785wb5w98ddwzfknkjrq"; depends=[BWStest gmp kSamples MASS multcompView mvtnorm Rmpfr SuppDists]; }; + PMmisc = derive2 { name="PMmisc"; version="0.1.1"; sha256="1wyafrq9j212bbmpp6lnspxib6ca9860vp3xm9ndn8b374hv7s6r"; depends=[robust]; }; + PMwR = derive2 { name="PMwR"; version="0.10-1"; sha256="0z32cfa46mhmwnvlqpw6md9dyyy2hn5mwlrf2v4lx1b1gxqskjpd"; depends=[crayon datetimeutils fastmatch NMOF orgutils textutils zoo]; }; + PNADcIBGE = derive2 { name="PNADcIBGE"; version="0.4.3"; sha256="1mckjb6q7ffvzsifjwc411p9r1vykvczk6v7lcsmpzliifgc0ys4"; depends=[dplyr magrittr RCurl readr readxl survey timeDate]; }; + POCRE = derive2 { name="POCRE"; version="0.5.0"; sha256="0aph1lmb0xkzm4l4ah2wrx13d138igf4k4w9wb9lca4vv6m7xzqf"; depends=[EbayesThresh ggplot2 pracma]; }; POET = derive2 { name="POET"; version="2.0"; sha256="0w3jhj45sxisyrpcsazbrbcsz7rmraw71jjm0zixbcgc4klb98ar"; depends=[]; }; POMaSPU = derive2 { name="POMaSPU"; version="1.0.0"; sha256="0jz3jgzdykv0xvfw3ix0hbs32as6dp7p5v8bj5nddknx10d0siya"; depends=[MASS matrixStats Rcpp RcppArmadillo]; }; POPdemog = derive2 { name="POPdemog"; version="1.0.3"; sha256="0j83c853ligmw8ag4pb0vj46sfn2w2ynh4wvgkabzs688hxxni8r"; depends=[]; }; POT = derive2 { name="POT"; version="1.1-6"; sha256="08av53rnishk3mhwrb6ydbgc3n9nwi87jlx5vmag3vpiidhn1laj"; depends=[]; }; PP = derive2 { name="PP"; version="0.6.1"; sha256="10innn1nhc4zqimd0gww7k3k30jkfkkj89zkddcjqa2sqq5gs3xr"; depends=[Rcpp]; }; PP3 = derive2 { name="PP3"; version="1.2"; sha256="1g36al9w1rxyhfzbvpw9siqq57h2xl0zr94wysz8i0jzqkkqkrvf"; depends=[]; }; - PPCI = derive2 { name="PPCI"; version="0.1.2"; sha256="1k6kbln0h1wkzg594k1db6r3nk5dqwhg8gm1hgval05dsdhp8j8b"; depends=[rARPACK]; }; + PPCI = derive2 { name="PPCI"; version="0.1.4"; sha256="18q9jjmmmmghwyzpj42k7xa55anvbg1jnqs2y6c5jzlb2cw3ga4h"; depends=[rARPACK]; }; PPQplan = derive2 { name="PPQplan"; version="0.1.0"; sha256="06v4agq8bd3ssbfnl1jyfzy5xi4jwj6wqfmj9qalrv9kllh839mv"; depends=[ggplot2 plotly tolerance]; }; PPforest = derive2 { name="PPforest"; version="0.1.1"; sha256="0iplbw5b2vhqbp6gc123ykzmilwa80akljkv3jzfmi90ckm4k08m"; depends=[doParallel dplyr magrittr plyr Rcpp RcppArmadillo tidyr]; }; PPtree = derive2 { name="PPtree"; version="2.3.0"; sha256="002qjdx52r2h90wzrf2r3kz8fv3nwx08qbp909whn6r4pbdl532v"; depends=[MASS penalizedLDA]; }; PPtreeViz = derive2 { name="PPtreeViz"; version="2.0.3"; sha256="1x5rcls49jz19y3h98n2k4kypm8mv8p586clhdj62bvp2nl8wg3x"; depends=[ggplot2 gridExtra partykit Rcpp RcppArmadillo]; }; - PQLseq = derive2 { name="PQLseq"; version="1.0"; sha256="1r4zxwb3rw7k9jixv1wqkgdq5zjlwf85xrc0np8j96k1gdwals72"; depends=[doParallel foreach Matrix Rcpp RcppArmadillo]; }; + PQLseq = derive2 { name="PQLseq"; version="1.1"; sha256="1h8baf0apxvimarr2qwlh6pdzv88ib1dzw927swsyimjg44wjbfc"; depends=[doParallel foreach Matrix Rcpp RcppArmadillo]; }; PRIMME = derive2 { name="PRIMME"; version="2.2-0"; sha256="1iwwh871v87fz6j6q9nvfiq8x8nz2v87n52l80a15d5rvvxv2rbi"; depends=[Matrix Rcpp]; }; - PRIMsrc = derive2 { name="PRIMsrc"; version="0.7.5"; sha256="12wfb4p8ra1b8xwq42350cxl2fy9gsrp5m7inyxnh31vplgripy9"; depends=[glmnet Hmisc quantreg superpc survival]; }; + PRIMsrc = derive2 { name="PRIMsrc"; version="0.8.2"; sha256="04g1saf511xs26m1iv9xfsmfs15fdfaxh5qlbay2mcb198270pd8"; depends=[glmnet Hmisc quantreg superpc survival]; }; PRISM_forecast = derive2 { name="PRISM.forecast"; version="0.1.6"; sha256="0w0fjbaafq90ac35h70z8g95q1i812v0ivkif4lx8l3q7rhjrvb5"; depends=[glmnet xts zoo]; }; PRISMA = derive2 { name="PRISMA"; version="0.2-7"; sha256="0sk2d07m8rhipa0kdbaf8ngryda6f1ihp5akpnyw2llajf0x8as5"; depends=[ggplot2 gplots Matrix]; }; - PRISMAstatement = derive2 { name="PRISMAstatement"; version="1.0.1"; sha256="1qk9cljk52m8rcasck8cl7gwzhcsx0p58jn31izy2j027w0rns7j"; depends=[DiagrammeR]; }; + PRISMAstatement = derive2 { name="PRISMAstatement"; version="1.0.4"; sha256="0rsffbmaaqa6zkgh7bg1l91xfk8ri7b1w6ghid44xvj3k22y0kj6"; depends=[DiagrammeR]; }; PROTOLIDAR = derive2 { name="PROTOLIDAR"; version="0.1"; sha256="0bz3071b0wlcvh40vl3dyiiixk5avsj6kjjnvlvx264i5g08rij4"; depends=[]; }; PROreg = derive2 { name="PROreg"; version="1.0"; sha256="0c2vgzbdi29rlrnrb971dqrl7rlb9y3rw8nj5rjgwsjqxv607ssj"; depends=[car fmsb Matrix matrixcalc numDeriv RColorBrewer rootSolve]; }; PROscorer = derive2 { name="PROscorer"; version="0.0.1"; sha256="0mgj0mi0vzdk0agimsx4k9i4bss0j5lqiayzhldr1hrqrx2a4f3d"; depends=[PROscorerTools]; }; PROscorerTools = derive2 { name="PROscorerTools"; version="0.0.1"; sha256="1vliffkfqdn5l96bncfgayv19i20kmawlxi8q853wamj6npdpv5r"; depends=[]; }; PRROC = derive2 { name="PRROC"; version="1.3.1"; sha256="1m28h8pcd78049lz2qixhkcr9h5b3jik3maqzfbvq9y58z71i4a7"; depends=[]; }; - PReMiuM = derive2 { name="PReMiuM"; version="3.2.0"; sha256="0aib10kalc8y1vdkbd8ipdkg9wyb984pwf979fm8d6jjbdhp0sa7"; depends=[ald BH cluster data_table gamlss_dist ggplot2 plotrix Rcpp RcppEigen]; }; + PReMiuM = derive2 { name="PReMiuM"; version="3.2.1"; sha256="0cn08w7kw0j0z8nqv380m7xs35f4mlhzx0jyzyqk811v9jzk0jii"; depends=[ald BH cluster data_table gamlss_dist ggplot2 plotrix Rcpp RcppEigen rgdal spdep]; }; PResiduals = derive2 { name="PResiduals"; version="0.2-5"; sha256="05jk543lv8isbxv24cbzqh80l6xs05lx2k9xzz7s0121vb2yd3v4"; depends=[Formula MASS rms SparseM]; }; PSAgraphics = derive2 { name="PSAgraphics"; version="2.1.1"; sha256="05c0k94dxddyrhsnhnd4jcv6fxbbv9vdkss2hvlf3m3xc6jbwvh9"; depends=[rpart]; }; - PSCBS = derive2 { name="PSCBS"; version="0.63.0"; sha256="0pgha1rvb9nfxkr8fxc17zgws781qwmrl01rss7bd0sf2n2lw2k2"; depends=[DNAcopy future listenv matrixStats R_cache R_methodsS3 R_oo R_utils]; }; + PSCBS = derive2 { name="PSCBS"; version="0.64.0"; sha256="02970zk7gkwi1d6mp82z1mbg8pjxf1pdwwv8j9wiqyfdily935i1"; depends=[aroma_light DNAcopy future listenv matrixStats R_cache R_methodsS3 R_oo R_utils]; }; PSF = derive2 { name="PSF"; version="0.4"; sha256="1hjry8vjqr6zk2i2ppf3fcpsr4v4jm1705qv6i1iz2agl6g2rcnp"; depends=[cluster data_table forecast knitr]; }; PSIMEX = derive2 { name="PSIMEX"; version="1.1"; sha256="0cndzasvg4y49incyd9nfz8y3z88ywbc7xk0zzjir665pv2xn23b"; depends=[knitr MCMCglmm pedigree plotrix]; }; PSLM2015 = derive2 { name="PSLM2015"; version="0.2.0"; sha256="1f8kzlqil2ac8a9fbj9fhdni2narh2yaaz044mlx7gsv2ns3ai19"; depends=[dplyr ggplot2 magrittr]; }; PSM = derive2 { name="PSM"; version="0.8-12"; sha256="0h83b7bhslgnrq4442464i9iil6gjhw3pwxvgz5313pfk2km30vg"; depends=[deSolve MASS numDeriv ucminf]; }; - PSPManalysis = derive2 { name="PSPManalysis"; version="0.2.0"; sha256="0vya2zlsmgf6zmkk9k9aaaqkx7qprknl0wazqlqd7zdp8z0zj39j"; depends=[devtools]; }; + PSPManalysis = derive2 { name="PSPManalysis"; version="0.2.1"; sha256="1vc13klv1iwyxb4srv4hi88v62hxbm244fg1lj8k5z11kmyii80n"; depends=[pkgbuild]; }; PST = derive2 { name="PST"; version="0.94"; sha256="0f28zrnlficbi9iil6wbh51k9mghpkz63hw05lpmlpx1yl5nd0a6"; depends=[RColorBrewer TraMineR]; }; PSTR = derive2 { name="PSTR"; version="1.2.1"; sha256="0vydm3s7m6fkwfnrfs29hwq7z5zfhrxx1ryvr3wrw1481ir29nc2"; depends=[ggplot2 magrittr plotly snowfall tibble]; }; PSW = derive2 { name="PSW"; version="1.1-3"; sha256="0ahm7rp795d7j88n15b3q0gl573p3g0krc7jd1zv87g4bsdc9b5x"; depends=[gtools Hmisc]; }; @@ -2558,11 +2677,11 @@ in with self; { PVAClone = derive2 { name="PVAClone"; version="0.1-6"; sha256="0fj5p3z2cwnyshrr4rq88wpij2xax5p4aq0x4p342kadx9d6x2ga"; depends=[coda dclone dcmle]; }; PVR = derive2 { name="PVR"; version="0.3"; sha256="0pcnazkiwmicr3k6k70r8skqk0pd46fcqhhxghawxjs4slgnygkj"; depends=[ape MASS splancs]; }; PWD = derive2 { name="PWD"; version="1.0"; sha256="0ksr3biaqd4p5a4lv28i4cwk1fn9822ndq2161mgvc1c344p06fj"; depends=[Rcpp RcppArmadillo]; }; - PWEALL = derive2 { name="PWEALL"; version="1.2.1"; sha256="08a7ih9yyp0dqw89n1qhwbxhgiks91c3wjbaz08b6ck6cv6gzy6k"; depends=[survival]; }; - PWFSLSmoke = derive2 { name="PWFSLSmoke"; version="1.0.20"; sha256="0g15ib0zks6q7swpd9s5zyl3sp83r54959ckvc88wn19bmn8dj9l"; depends=[cluster dplyr dygraphs futile_logger ggmap httr jsonlite leaflet lubridate magrittr mapproj maps maptools MazamaSpatialUtils openair png raster RColorBrewer readr reshape2 rgdal RgoogleMaps sp stringr xts zoo]; }; + PWEALL = derive2 { name="PWEALL"; version="1.3.0"; sha256="0nb0v6wvj9ay90qcbrr9drg2g84fb7a9m78pzb69wp8789i8ixhk"; depends=[survival]; }; + PWFSLSmoke = derive2 { name="PWFSLSmoke"; version="1.1.3"; sha256="0wybb5ygcvz5w2sl26rwm7hg6681lzcyr5v1nl7lb72z565f1wqw"; depends=[cluster dplyr dygraphs futile_logger ggmap httr jsonlite leaflet lubridate magrittr mapproj maps maptools MazamaSpatialUtils openair png raster RColorBrewer readr reshape2 rgdal RgoogleMaps rlang sp stringr tibble tidyr xts]; }; PabonLasso = derive2 { name="PabonLasso"; version="1.0"; sha256="158xg9i13nqy1bnpch8r6a7yas01hsdidmcypgccmyh7d7l52mr1"; depends=[]; }; Pade = derive2 { name="Pade"; version="0.1-4"; sha256="1kx5qpxd3x43bmyhk8g2af44hz3prhnrzrm571kfjmak63kym741"; depends=[]; }; - PairViz = derive2 { name="PairViz"; version="1.2.1"; sha256="0mjp5p6n5azbhrm2hvb9xyqjfhd49pw9ia8k70749yc96ws1qqc7"; depends=[graph gtools TSP]; }; + PairViz = derive2 { name="PairViz"; version="1.3.2"; sha256="01nzf7as848i3vpwgdm450x3f5lapfh2vgd59sy6qr80c19nfjl9"; depends=[graph gtools TSP]; }; PairedData = derive2 { name="PairedData"; version="1.1.1"; sha256="07y5fd4fkwfp0lbacf41ya8cn7x4n1haxl0cln9iibjffc1mbr5q"; depends=[ggplot2 gld lattice MASS mvtnorm]; }; PairwiseD = derive2 { name="PairwiseD"; version="0.9.62"; sha256="19qjms99gf7s39nwwgj56n8426d0gw80dipz165sk3km4zb2mcwv"; depends=[openxlsx xlsx]; }; PakPC2017 = derive2 { name="PakPC2017"; version="1.0.0"; sha256="196jvhv7pv4pvnnz9izk6icxv3aml26mif0w6g4907izyszf8cal"; depends=[dplyr magrittr]; }; @@ -2575,7 +2694,7 @@ in with self; { Paneldata = derive2 { name="Paneldata"; version="1.0"; sha256="00hk340x5d4mnpl3k0hy1nypgj55as2j7y2pgzfk3fpn3zls5zib"; depends=[]; }; ParDNAcopy = derive2 { name="ParDNAcopy"; version="2.0"; sha256="017xwznhfibi8kp0ifww02c0qcq0vxs06rjww4kcp2bvdmld8kc4"; depends=[DNAcopy]; }; ParallelForest = derive2 { name="ParallelForest"; version="1.1.0"; sha256="1xa9lfgrvzv7bvv1aaabcfk4372p8x5gxgj463h5ggf9x177lj5j"; depends=[]; }; - ParallelLogger = derive2 { name="ParallelLogger"; version="1.0.0"; sha256="16mwfylpk7r6cy87vb1d1h8mkwn32cmygpqvy5kk538lj9b8jcdl"; depends=[jsonlite snow XML]; }; + ParallelLogger = derive2 { name="ParallelLogger"; version="1.0.1"; sha256="01wb7rqlyp07ahcr4gs0jh92z56v9dsgkbp18y2xdnl7z533fjbh"; depends=[jsonlite snow XML]; }; ParallelPC = derive2 { name="ParallelPC"; version="1.2"; sha256="07y7xb16865khxkvwsk1yglzyy7ja4aj2wpkipaz48i77c3x8bi2"; depends=[]; }; ParallelTree = derive2 { name="ParallelTree"; version="0.1.2"; sha256="0x99x1iycx8ik8cih972awnxifvmhbrmjrf2csmnn9fw4rsqn0p5"; depends=[ggplot2]; }; ParamHelpers = derive2 { name="ParamHelpers"; version="1.11"; sha256="181p2r4zh53v6hjdr8fn7m1g65rl4svql8h1zjz25y1chk0g850n"; depends=[backports BBmisc checkmate fastmatch]; }; @@ -2589,18 +2708,18 @@ in with self; { Peacock_test = derive2 { name="Peacock.test"; version="1.0"; sha256="0ypvwywipyh8lm8xkazsfjgjpvvyi2g8kid63qff11372p33m6xs"; depends=[]; }; PeakError = derive2 { name="PeakError"; version="2017.06.19"; sha256="1d4v7s478zjz42dm6ps4nnqqyyqv84dgmzn1bp1a4qwnfv9vmfg7"; depends=[]; }; PeakSegDP = derive2 { name="PeakSegDP"; version="2017.08.15"; sha256="1ndf4d4ikcyqi0k51kil2jw777z4c1m4pda3dahrjmjyz0jhrhkw"; depends=[]; }; - PeakSegJoint = derive2 { name="PeakSegJoint"; version="2017.08.11"; sha256="1xp0gxdwsy6z06kbfg5ca2qm0kwva8scxbg22km20cikwpgdi6rm"; depends=[data_table PeakError penaltyLearning]; }; + PeakSegJoint = derive2 { name="PeakSegJoint"; version="2018.10.3"; sha256="0f0dw6swhhf301j4ci3rs8cmzd39dcjlb0kqxpdh7f00gp3qn7da"; depends=[PeakError penaltyLearning]; }; PeakSegOptimal = derive2 { name="PeakSegOptimal"; version="2018.05.25"; sha256="0j39jzy4r0h787vs3klgbpcmb096ds3hzhvv5w3xs53kl0qkypj4"; depends=[penaltyLearning]; }; Peaks = derive2 { name="Peaks"; version="0.2"; sha256="0a173p5cdm1jnm7bwsvjpxh4dccy593g02c4qjwky1cgzy5rvin2"; depends=[]; }; PearsonDS = derive2 { name="PearsonDS"; version="1.1"; sha256="0rqh9ji0bah3n1c6fcg7krgqs65qla9p3xrnc4jr7va6ph104im9"; depends=[]; }; PearsonICA = derive2 { name="PearsonICA"; version="1.2-4"; sha256="0jkbqha1nb9pf72ffki47wymsdmd50smkdhvpzvanv4y2rmqfhvg"; depends=[]; }; PedCNV = derive2 { name="PedCNV"; version="0.1"; sha256="09qxcjzwdgzdkbj28rzmfv7k3q2qsiapnvx3m45a835r57h5gynp"; depends=[ggplot2 Rcpp RcppArmadillo]; }; - PeerPerformance = derive2 { name="PeerPerformance"; version="2.1.2"; sha256="07as5csvrlr3a55miadhbcvjrjag7g69wxmb8z7rpipppa8f9q7y"; depends=[lmtest sandwich snow]; }; + PeerPerformance = derive2 { name="PeerPerformance"; version="2.2.1"; sha256="1igh8svdbxkcfgi2s70cpwdcy7jb4yhxias80vck203skyiq97vx"; depends=[lmtest sandwich]; }; PenCoxFrail = derive2 { name="PenCoxFrail"; version="1.0.1"; sha256="0snjf8jxzyf30xj3wx9p6g073dqw592l1j1c6yxfg8y4kgzhzwq7"; depends=[Matrix Rcpp RcppArmadillo survival]; }; PepPrep = derive2 { name="PepPrep"; version="1.1.0"; sha256="1s2xn05xry50l9kf1mj6yd1dpc7yp6g3d00960hswvhznb0a4l84"; depends=[biomaRt stringr]; }; PepSAVIms = derive2 { name="PepSAVIms"; version="0.9.1"; sha256="0m4jrq6wcjy0k80gvrnm9f7kvi1ifx9182xfq0psyaxpj0ggvzij"; depends=[elasticnet]; }; Peptides = derive2 { name="Peptides"; version="2.4"; sha256="1i5p0z4zhis4p1czwz3cryr64lys4dp2fddnmmasgspl8fyz8p05"; depends=[Rcpp]; }; - PerFit = derive2 { name="PerFit"; version="1.4.2"; sha256="147f2fbcjb0639h0bmiikli05r3jlbp559hj9v9af3s09l1l6v8y"; depends=[fda Hmisc irtoys ltm MASS Matrix mirt]; }; + PerFit = derive2 { name="PerFit"; version="1.4.3"; sha256="0qmh78wrx3vzz41z30db3bb62n325blphjhpzdzykfx77gr8plyr"; depends=[fda Hmisc irtoys ltm MASS Matrix mirt]; }; PerMallows = derive2 { name="PerMallows"; version="1.13"; sha256="0ny2vc8f0npixaw1kp2d93xr4g46nsg8jjwvi6afv9xjvaz0i6wy"; depends=[Rcpp]; }; Perc = derive2 { name="Perc"; version="0.1.2"; sha256="0p6l4b536jjz4lmgsdrxqsh77lx4vkb6hbyd6vhbc102m5x3b1yc"; depends=[]; }; PerfMeas = derive2 { name="PerfMeas"; version="1.2.1"; sha256="1x7ancmb41zd1js24rx94plgbssyc71z2bvpic6mg34xjkwdjw93"; depends=[graph limma RBGL]; }; @@ -2611,18 +2730,20 @@ in with self; { PetfindeR = derive2 { name="PetfindeR"; version="1.1.3"; sha256="1dkiawadfsb8akssnhddd64bn6dq6r95c7j4g3mkbq6fs9106h8x"; depends=[dplyr httr jsonlite plyr]; }; PhViD = derive2 { name="PhViD"; version="1.0.8"; sha256="038pw24sb8ja8pbbmj05rww6413i2ljybb2dxwgrpffv22aqawmc"; depends=[LBE MCMCpack]; }; PharmPow = derive2 { name="PharmPow"; version="1.0"; sha256="0gabkd8p4zsig9p697lyk8m2jxb5abjk81rpzd5ih1yk1qanhsn5"; depends=[scatterplot3d]; }; - Phase123 = derive2 { name="Phase123"; version="1.5"; sha256="05yvzx0sf6dq47nr5bk1kd2icndf20z39y9fj90zqdm3ay2hi586"; depends=[Rcpp RcppArmadillo survival]; }; + Phase123 = derive2 { name="Phase123"; version="1.8"; sha256="0n3prfbsav36an13q5bkxprchqf7i8m1mv1nivkcqxngiah8z1md"; depends=[Rcpp RcppArmadillo survival]; }; PhaseType = derive2 { name="PhaseType"; version="0.1.3"; sha256="092dqyqfaxj8qpwxcjb5cayhnq597rfjz1xb93ps4nrczycqs0l6"; depends=[coda ggplot2 reshape]; }; - PhenotypeSimulator = derive2 { name="PhenotypeSimulator"; version="0.2.2"; sha256="1mr4jq44ijdiabp3simfjh9zcl9anp1w0dili6w5sq8dzgids8gj"; depends=[data_table dplyr ggplot2 mvtnorm optparse R_utils Rcpp reshape2 snpStats zoo]; }; + PhenotypeSimulator = derive2 { name="PhenotypeSimulator"; version="0.3.1"; sha256="08bchanqs5ljihzxqy77vvq4kzqwn733jkppjdk4w6g65mq211bl"; depends=[data_table dplyr ggplot2 mvtnorm optparse R_utils Rcpp reshape2 snpStats zoo]; }; Phxnlme = derive2 { name="Phxnlme"; version="1.0.0"; sha256="0h9mi8p95rp1s8xsdv38j9fpy2cy9zvjnldjmnj0n469kimp2782"; depends=[ggplot2 gridExtra lattice manipulate testthat]; }; PhyInformR = derive2 { name="PhyInformR"; version="1.0"; sha256="10d720ww909b1xmdrms554pnn0757nzppnrniar4n157mh0qw7ms"; depends=[ape doParallel foreach geiger ggplot2 gplots gridExtra hexbin iterators PBSmodelling phytools RColorBrewer]; }; + PhySortR = derive2 { name="PhySortR"; version="1.0.8"; sha256="19426xjdii74qds0wmq5sa88zys81nyqb9lvf9pfihbjgrjr770a"; depends=[ape phytools]; }; PhyloMeasures = derive2 { name="PhyloMeasures"; version="2.1"; sha256="01axs78s10y1bkx8dbs9vvnphdzik7hpibkwyib1x9mznmyg90hr"; depends=[ape]; }; - PhylogeneticEM = derive2 { name="PhylogeneticEM"; version="1.1.0"; sha256="0ji78zx0gp1nd5assrmwxdkxryfjijnn9g34w2g2qv32s1fdj6ak"; depends=[ape capushe foreach glmnet grplasso LINselect MASS Matrix plyr Rcpp RcppArmadillo robustbase]; }; + PhylogeneticEM = derive2 { name="PhylogeneticEM"; version="1.2.1"; sha256="0mrlyaj15y1dzlnn13phjq64immad08wn99sv9zdixf7ybdvwwnv"; depends=[ape capushe foreach gglasso glmnet LINselect MASS Matrix plyr Rcpp RcppArmadillo robustbase]; }; PhysActBedRest = derive2 { name="PhysActBedRest"; version="1.0"; sha256="0gmqh700cf6aiagb45iyyf85pgp3b86fx7fbv9lrsm4mda0r8h75"; depends=[chron lubridate stringr]; }; PhysicalActivity = derive2 { name="PhysicalActivity"; version="0.2-2"; sha256="14z6plgwyr46vs9m997rvlz8sdglfs9g087an8668zqkzzs2w4ln"; depends=[]; }; PieceExpIntensity = derive2 { name="PieceExpIntensity"; version="1.0.4"; sha256="023hq0gg1vi0j3yf8p5lisgs8wfp5qwyd4akxxzx7wad2985gxb3"; depends=[Rcpp RcppArmadillo]; }; Pijavski = derive2 { name="Pijavski"; version="1.0"; sha256="1027lmmk17br9zxah980j6l3k2p92065bwigw6gpy9g0g5jjl4f1"; depends=[Rcpp]; }; PivotalR = derive2 { name="PivotalR"; version="0.1.18.3"; sha256="14l7y57zmfr7h4bq01j83am2plxx320kkhbsh0x2ypif9dni4rf2"; depends=[Matrix]; }; + PkgsFromFiles = derive2 { name="PkgsFromFiles"; version="0.5"; sha256="1fbvnlw6hxg6zndyrssiw5yyp6hz3ln985by3vwp34sfwdcwjakl"; depends=[curl dplyr readr stringdist stringr XML]; }; PlackettLuce = derive2 { name="PlackettLuce"; version="0.2-3"; sha256="1w2ihclnh3x83ip4hh95bchv5j832cqy6n140q5q1dbfz6fy1bxv"; depends=[igraph MASS Matrix partykit psychotools psychotree qvcalc rARPACK sandwich]; }; Planesmuestra = derive2 { name="Planesmuestra"; version="0.1"; sha256="0v7l4hrfckcf7zmk0ihq2ij0qli7x12j17vd6752d1yjk27fgk57"; depends=[]; }; PlasmaMutationDetector = derive2 { name="PlasmaMutationDetector"; version="1.7.2"; sha256="0qra7q2pzw212qylyrfhv6zjcsldfw84b93cari0qjqnw4gyfph2"; depends=[GenomicRanges ggplot2 robustbase Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; @@ -2648,7 +2769,7 @@ in with self; { PolynomF = derive2 { name="PolynomF"; version="1.0-2"; sha256="0zczryvjykr7yifb5isvys2mzgi0yj92j3p3xixn2qzzq9cr0h9a"; depends=[]; }; Pomic = derive2 { name="Pomic"; version="1.0.4"; sha256="0xy5fgimbgqqac3n7akhwyvnrvd9fpvx9h8nk4spxrxc8x0km1w7"; depends=[]; }; PooledMeanGroup = derive2 { name="PooledMeanGroup"; version="1.0"; sha256="0i9s7qskjnji3mf6clsi69rnni57v8cysgr9gh3hvxjzlf1sq8y7"; depends=[]; }; - PopED = derive2 { name="PopED"; version="0.3.2"; sha256="1lvzqpij4dqbw144ya25bhlx96mwaxz932r0bl3jsx1si9ijb8xz"; depends=[codetools dplyr ggplot2 MASS mvtnorm]; }; + PopED = derive2 { name="PopED"; version="0.4.0"; sha256="1cj6nj5w4ckvnldpc7g4mxdps619zlhzsdibd9ih8i2lxh1xbrfz"; depends=[boot codetools dplyr ggplot2 magrittr MASS mvtnorm purrr stringr tibble tidyr]; }; PopGenKit = derive2 { name="PopGenKit"; version="1.0"; sha256="0l4mbm0cyppgvcw2cbimrv29aiciyj00k8wfwcj5zr8sh7fgfhs4"; depends=[]; }; PopGenReport = derive2 { name="PopGenReport"; version="3.0.0"; sha256="0z4g7ll3dk9mgawnn7k0ysgj8w55adivc4zcrr898x399g7vnfx4"; depends=[ade4 adegenet calibrate data_table dismo gap gdistance genetics GGally ggplot2 knitr lattice mmod pegas plyr R_utils raster reshape rgdal RgoogleMaps sp vegan xtable]; }; PopGenome = derive2 { name="PopGenome"; version="2.6.1"; sha256="074vfyfhlqnc38jb0shwp5a4ikvb4jflfghmg88h3a2za3nj4abs"; depends=[ff]; }; @@ -2659,26 +2780,26 @@ in with self; { PortfolioEffectHFT = derive2 { name="PortfolioEffectHFT"; version="1.8"; sha256="0y4x0d91j6g52136d921hfs5swzf85gkxafxfkf3c15dl5ns120v"; depends=[ggplot2 rJava zoo]; }; PortfolioOptim = derive2 { name="PortfolioOptim"; version="1.0.3"; sha256="1s9msqjxqxqafhncc3hi5prhzl5cj0incd5rc9fxc23l5l4n9xjx"; depends=[Rglpk]; }; PottsUtils = derive2 { name="PottsUtils"; version="0.3-3"; sha256="165k4sjh3kqkb8bzi68wx00yl77yfbgs70fcbpzmsmcw4g4hdpzn"; depends=[miscF]; }; - PoweR = derive2 { name="PoweR"; version="1.0.6"; sha256="0p2v07wp1hqmmbf7b3mh0v4n5hbbcms9xkdhjzdfxkkbafxybc24"; depends=[Rcpp RcppArmadillo]; }; + PoweR = derive2 { name="PoweR"; version="1.0.7"; sha256="040wc7hxa8y6bm1rs7ip2skdxmmwksxkyb6xzqgdjp8m7a25fppb"; depends=[Rcpp RcppArmadillo]; }; Power2Stage = derive2 { name="Power2Stage"; version="0.5-1"; sha256="155w5yp0pdq4g3638m0c54i81lfk0g0f339hzbxpkxhs8ds7g2zv"; depends=[cubature mvtnorm PowerTOST]; }; PowerNormal = derive2 { name="PowerNormal"; version="1.2.0"; sha256="1kryqcjvgwk0l4z3gqxdiz47mha3jw5583jlb9z7ml6v7cam06sm"; depends=[]; }; PowerTOST = derive2 { name="PowerTOST"; version="1.4-7"; sha256="02k6jn5dw70518g55bchax0l5gkci827lqwwyxwnn6rzs3mx4ybs"; depends=[cubature mvtnorm TeachingDemos]; }; - PowerUpR = derive2 { name="PowerUpR"; version="1.0.0"; sha256="04lc6xjwwy9wxd7pg1wm5vg0bq3194cp0r7i72da7c10b31frdh1"; depends=[]; }; - PracTools = derive2 { name="PracTools"; version="0.9"; sha256="0yra18is5pdwzw3vc5sk53g89n5rz1hpn8zlvcx541nxr43i69sd"; depends=[]; }; + PowerUpR = derive2 { name="PowerUpR"; version="1.0.1"; sha256="1m7w3851kpnf7nnajh9w427cjpyiz18gmqhqvd4gz4gdwqpl6chz"; depends=[]; }; + PracTools = derive2 { name="PracTools"; version="1.1"; sha256="19yyhri8wr7ki62zhl9bhpf0wbx9fhrfph44j4l65kx68aphl22d"; depends=[]; }; PreKnitPostHTMLRender = derive2 { name="PreKnitPostHTMLRender"; version="0.1.0"; sha256="1749cd734f4bf0n4068s2m617k6as8h9bwp44mm3la2xy3vjf5g1"; depends=[knitr rmarkdown XML]; }; PreProcess = derive2 { name="PreProcess"; version="3.1.5"; sha256="049gdrp4kwvsid2bn12f61557qgpfv8cpzrd1b4ml47jpw8w0xdk"; depends=[oompaBase]; }; PreciseSums = derive2 { name="PreciseSums"; version="0.3"; sha256="02w0pa9dd196sg6zg9w2fp4b0k6wibbw9rbvasr3aphh98kbd6ch"; depends=[]; }; PredPsych = derive2 { name="PredPsych"; version="0.3"; sha256="0bqc2vl32z9wzby7ncrab742cajy4w5kq7wv2gh2jjqdnv9nkia7"; depends=[caret e1071 ggplot2 MASS mclust party plyr randomForest rpart statmod]; }; PredictABEL = derive2 { name="PredictABEL"; version="1.2-2"; sha256="08c7j2in1wlas6nmy44s08cq86h5fizqbhsnq312dllqdzmb2h9s"; depends=[epitools Hmisc PBSmodelling ROCR]; }; + PredictionR = derive2 { name="PredictionR"; version="1.0-11"; sha256="1dljdbya93dirx715yqs4vz7hbbcwpgrsvyfgikkm2fj28nnn6k9"; depends=[fitdistrplus]; }; PredictiveRegression = derive2 { name="PredictiveRegression"; version="0.1-4"; sha256="15vkisj3q4hinc3d537s8inhj3wk62q67qhy050xmp9j563ainmd"; depends=[]; }; PresenceAbsence = derive2 { name="PresenceAbsence"; version="1.1.9"; sha256="17qn4ggkr5aqml45nkihj1j35y479ywkm1xcfkb2g8ky66jb0c0s"; depends=[]; }; - PrevMap = derive2 { name="PrevMap"; version="1.4.1"; sha256="1hmvfk5zpflwncaiy2rr0jr2gr2gk66na6ks82b6dfgk8xdc8xmk"; depends=[geoR Matrix maxLik numDeriv pdist raster splancs truncnorm]; }; + PrevMap = derive2 { name="PrevMap"; version="1.4.2"; sha256="0iblmr2qapkhk2156xgkbr19fgz902vb79ssjpsm1w62f1i5ka9r"; depends=[geoR Matrix maxLik numDeriv pdist raster splancs truncnorm]; }; PriorGen = derive2 { name="PriorGen"; version="1.1.2"; sha256="0qvdqqdy7wdwwcq95mkgfyf7xf6xlpwdfs3gq299yyv2ba57flnm"; depends=[rootSolve]; }; PrivateLR = derive2 { name="PrivateLR"; version="1.2-22"; sha256="0d142fa3wk7yadvs8jszajs6hq9m03p0j6h5r4pbw7j0d1l72hgc"; depends=[]; }; ProDenICA = derive2 { name="ProDenICA"; version="1.0"; sha256="04gnsnd0xzw3bfbssdp06bar0lk305ry2c97pmwxgiz3ay88dfsj"; depends=[gam]; }; - ProFit = derive2 { name="ProFit"; version="1.1.2"; sha256="0z8prfmjx9zs7cqd316pc5iy3mg9vldcl12d3mk8llpvynn86ja3"; depends=[celestial cubature fftw FITSio LaplacesDemon magicaxis RColorBrewer Rcpp]; }; - ProFound = derive2 { name="ProFound"; version="1.0.1"; sha256="0ym8ggzm0b8zpfsq8xjjnwa09826gssaqhrqjyq88pwbhzh0y4pl"; depends=[celestial data_table FITSio magicaxis]; }; - ProNet = derive2 { name="ProNet"; version="1.0.0"; sha256="10r0gcxv0djrw99nd6a1jrnwvqmidw10ll645gvkp8l39li0107n"; depends=[igraph linkcomm MCL Rcpp]; }; + ProFit = derive2 { name="ProFit"; version="1.2.3"; sha256="00363b2in0lnspn5krwyvzpllyg249pq1vpy1sf51js45yhzw14f"; depends=[celestial cubature FITSio LaplacesDemon magicaxis RColorBrewer]; }; + ProFound = derive2 { name="ProFound"; version="1.1.0"; sha256="1rnzzvwdkcjmcij32s9lc0i6dgc8y8lmkyf7226wdqxpcr4cz0kz"; depends=[celestial data_table FITSio magicaxis RColorBrewer]; }; ProTrackR = derive2 { name="ProTrackR"; version="0.3.5"; sha256="19ilj03w5jpc1hw5avyb780iy3rdbby3kliym0si2zv6gyi9k541"; depends=[audio lattice signal tuneR XML]; }; ProbForecastGOP = derive2 { name="ProbForecastGOP"; version="1.3.2"; sha256="0fnw3g19lx4vs8vmn4qdirvybkiy2cxkhwkn9qa3phz45iixnvx4"; depends=[fields RandomFields]; }; ProbYX = derive2 { name="ProbYX"; version="1.1-0"; sha256="0dphf6jr72l235v3yjhwi8bqmv6ac7yrbyfwhx4qjrrcdnsb7qhl"; depends=[rootSolve]; }; @@ -2688,9 +2809,9 @@ in with self; { ProgGUIinR = derive2 { name="ProgGUIinR"; version="0.0-4"; sha256="0srhk42ssx4i096sbs4jacqjsc1ffqjxjgvpplzshlqaby1h3795"; depends=[ggplot2 MASS svMisc]; }; ProjectTemplate = derive2 { name="ProjectTemplate"; version="0.8.2"; sha256="1yxfx7vi1vvwlk5wzjlkv7q591hq6a5jdv4brzb6v670fmw21kvd"; depends=[]; }; ProjectionBasedClustering = derive2 { name="ProjectionBasedClustering"; version="1.0.7"; sha256="1nammbm9hjsgb46cqvhwx45lfaaxw13d12q43fgwk411a91rblm1"; depends=[deldir GeneralizedUmatrix geometry ggplot2 Rcpp shiny shinyjs vegan]; }; - ProliferativeIndex = derive2 { name="ProliferativeIndex"; version="1.0.0"; sha256="1baf4v9c2pqqmlgxs1jf7fhwqbsw0l1g7rdiia21acxix2j3b7wj"; depends=[]; }; + ProliferativeIndex = derive2 { name="ProliferativeIndex"; version="1.0.1"; sha256="03ipsbs8pfwr8wsx7j2y9c67ic4qcady7xpa47l8dr14ff63cfk7"; depends=[]; }; PropCIs = derive2 { name="PropCIs"; version="0.3-0"; sha256="1ywzi88igzaj2wnbrqa08cy7pw886z2m0x3j7rk45rin9mgpfdfd"; depends=[]; }; - PropClust = derive2 { name="PropClust"; version="1.4-3"; sha256="0k1wn62vlrddzhknyjpizpqxzrgl38frncql3mrlwakkn0kh8l5z"; depends=[dynamicTreeCut flashClust]; }; + PropClust = derive2 { name="PropClust"; version="1.4-6"; sha256="1p15n98b6qprphgbhdqgnsxy9d9kik19h6j9f2dy6x1hkinrzsfa"; depends=[dynamicTreeCut fastcluster]; }; PropScrRand = derive2 { name="PropScrRand"; version="1.1"; sha256="0cj62dzg4zm8d1g8h7qmviiwm93cwplppbi0p674fmmf1wy84v9s"; depends=[]; }; ProteinDescriptors = derive2 { name="ProteinDescriptors"; version="0.1.0"; sha256="1ydm8aym1wwxmfh4krh84nmj1wkgb574igg1sywl58l3qlnhya0l"; depends=[]; }; Przewodnik = derive2 { name="Przewodnik"; version="0.16.12"; sha256="1aq80aqflfm1ypqa51h10mc3g0qdr651j6g1b7008k7h0ryq42gv"; depends=[PBImisc PogromcyDanych]; }; @@ -2703,9 +2824,9 @@ in with self; { Publish = derive2 { name="Publish"; version="2018.04.17"; sha256="0dbcql2mi2qsxzcgcqa58yqynfq1800fa06ikyay2dm6gdyf0apq"; depends=[data_table lava multcomp prodlim survival]; }; PurBayes = derive2 { name="PurBayes"; version="1.3"; sha256="0nbm4cyrwfbwwbjbjkylr86cshaqbvbif6dkp4fag8kbcgyyx5qh"; depends=[rjags]; }; PwrGSD = derive2 { name="PwrGSD"; version="2.3"; sha256="1iisib4bnb3fp0nwxnal13fgd0fs1vckchr4cj716k72jh6k7slm"; depends=[survival]; }; - PxWebApiData = derive2 { name="PxWebApiData"; version="0.1.0"; sha256="0rd82kmpija4kkyl283b1z61q0abasimz4z7rki3kvfr0afa44j3"; depends=[httr jsonlite rjstat]; }; - PythonInR = derive2 { name="PythonInR"; version="0.1-4"; sha256="0krr5k0y9rggzq8f74nc6pyf47g8va1lvva31vc774hbb0rmr7gf"; depends=[pack R6]; }; - QCA = derive2 { name="QCA"; version="3.2"; sha256="1bjsc24b3g7xdb1fi3f4y1297g185gasl3xsgqxibck2zjlagl11"; depends=[fastdigest shiny venn]; }; + PxWebApiData = derive2 { name="PxWebApiData"; version="0.2.0"; sha256="0mpasacnlrwb37n221j04fzms63b63nj9z8d4h21nhkhmclrsxgg"; depends=[httr jsonlite rjstat]; }; + PythonInR = derive2 { name="PythonInR"; version="0.1-6"; sha256="0m5ppiklg4rqc3czkkb6xvkiw3bv3g6c9qcvs70i7l9gxh34xghv"; depends=[pack R6]; }; + QCA = derive2 { name="QCA"; version="3.3"; sha256="1h5vjcm3rhrs2jxrfx2h81rvbzh35slhpkn0mf13hln5c1hh0s0g"; depends=[fastdigest shiny venn]; }; QCAfalsePositive = derive2 { name="QCAfalsePositive"; version="1.1.1"; sha256="03qzb6vdnbri52gfx3laz14988p2swdv9m8i5z7gpsv3f3bjrxbp"; depends=[]; }; QCApro = derive2 { name="QCApro"; version="1.1-2"; sha256="1glfb1x1h05cs07nq5glqvlil58wp3c0kaxi1l7k94y797i8r7hq"; depends=[lpSolve]; }; QCAtools = derive2 { name="QCAtools"; version="0.2.3"; sha256="1q49l2mf02hqvz2ahqjdx7i3yxniy7dn2s74xjl9l6zdq8bypfw2"; depends=[directlabels ggplot2 QCA stringr]; }; @@ -2713,6 +2834,7 @@ in with self; { QCGWAS = derive2 { name="QCGWAS"; version="1.0-8"; sha256="1wn1kddgfmqv326pihnavbgsbd2yxrlq5s2xgi6kbprssxvj8bk1"; depends=[]; }; QCSIS = derive2 { name="QCSIS"; version="0.1"; sha256="0ibh3060jxf426svdfxiryvfhr8pwk991xs653d50ip4f9290y3a"; depends=[]; }; QCSimulator = derive2 { name="QCSimulator"; version="0.0.1"; sha256="1ff7xagnzibhrwrmkqyky4ik3kx7rrlajrs1ypm210sl1d73jwvs"; depends=[ggplot2]; }; + QDComparison = derive2 { name="QDComparison"; version="1.0"; sha256="1gn9r4vylwg483diafc5qy6wx5xhrr8nrxliwc32m6b6psblkvwz"; depends=[]; }; QFASA = derive2 { name="QFASA"; version="1.0.2"; sha256="1gfclbalcfcfmb8bq7rp8kpnaqblai9y7n7n7zh4a3qmia5vrz2b"; depends=[Rsolnp]; }; QFRM = derive2 { name="QFRM"; version="1.0.1"; sha256="1k79sq9il4326q7ivwdwlzw7drjv4pwqra3fr8kyyqcpmxh9296h"; depends=[]; }; QGglmm = derive2 { name="QGglmm"; version="0.7.1"; sha256="0hgs99vfan2nsz5i98an5z65lyw3a3ddhwzl0ffvlngw7gnshzqd"; depends=[cubature]; }; @@ -2726,7 +2848,7 @@ in with self; { QRank = derive2 { name="QRank"; version="1.0"; sha256="1f924r5bf5vjfl12hk1n5m3f94g30f6vmvzq2bn8295dflyndck0"; depends=[quantreg]; }; QRegVCM = derive2 { name="QRegVCM"; version="1.2"; sha256="0fcydkf6r2qxd59ylr8vn76bkxks91v58gfzvq3rjd5mqf9vsaaq"; depends=[quantreg SparseM truncSP]; }; QSARdata = derive2 { name="QSARdata"; version="1.3"; sha256="0dhldnh0jzzb4assycc0l14s45ymvha48w04jbnr34lrwgr9krh4"; depends=[]; }; - QTL_gCIMapping = derive2 { name="QTL.gCIMapping"; version="3.0"; sha256="1yk4sl4hlapcjajwq85jwcmpli4myib9862sz7ary676giq1vp18"; depends=[data_table doParallel foreach MASS openxlsx parcor qtl Rcpp stringr]; }; + QTL_gCIMapping = derive2 { name="QTL.gCIMapping"; version="3.1"; sha256="14zdq8a352jvgzq1wp0jj2wx3hs3cr5dpryyvlhv2c0syldlw7xl"; depends=[data_table doParallel foreach MASS openxlsx parcor qtl Rcpp stringr]; }; QTL_gCIMapping_GUI = derive2 { name="QTL.gCIMapping.GUI"; version="1.0"; sha256="05v93p3s9kncyzhiqgmd79h6b61xrr2k9vpgv9hjj0pkhsyanqc1"; depends=[data_table doParallel foreach MASS openxlsx parcor qtl Rcpp shiny stringr]; }; QTLRel = derive2 { name="QTLRel"; version="1.0"; sha256="0hlnh04w45imf0f7rm9pg1whlps5zxh00qvvn81hip16bv48cw79"; depends=[gdata lattice]; }; QUIC = derive2 { name="QUIC"; version="1.1"; sha256="021bp9xbaih60qmss015ycblbv6d1dvb1z89y93zpqqnc2qhpv3c"; depends=[]; }; @@ -2734,8 +2856,9 @@ in with self; { QZ = derive2 { name="QZ"; version="0.1-6"; sha256="1vgqwv3rbnmz2sgbmbivgnxcwy5dzgk6ivqskdnqkil4f10zflmi"; depends=[Matrix]; }; Qtools = derive2 { name="Qtools"; version="1.3"; sha256="1vbjydacgczjlsf8b8id25n3k0cq74i43nsvax22k8hbvj4g0b94"; depends=[boot MASS mice quantreg]; }; QuACN = derive2 { name="QuACN"; version="1.8.0"; sha256="1597blp8gqc5djvbgpfzi8wamvy0x50wh5amxj9cy99qa0jlglxi"; depends=[combinat graph igraph RBGL]; }; + QuClu = derive2 { name="QuClu"; version="0.1.0"; sha256="0a2malh9vz5jcjgdx4d98k0c61vz3ip8ynqh5i85x8hzcby11qgj"; depends=[]; }; QualInt = derive2 { name="QualInt"; version="1.0.0"; sha256="1ms96m3nz54848gm9kdcydnk5kn2i8p1rgl2dwn7cqcqblfvsr4j"; depends=[ggplot2 survival]; }; - Quandl = derive2 { name="Quandl"; version="2.8.0"; sha256="0n1c4343ki8nia7qrq2m9zb7b05qr3yjwvk1ji7m44sa613w6y5l"; depends=[httr jsonlite xts zoo]; }; + Quandl = derive2 { name="Quandl"; version="2.9.1"; sha256="1pifih9p6bzr11vw3pgfjx4nfjp7ap3a49mvfgys994bkai5mhhr"; depends=[httr jsonlite xts zoo]; }; QuantNorm = derive2 { name="QuantNorm"; version="1.0.3"; sha256="1kc8qfa5fwdmk4nfzlkd22968zn44ggr65ysm1l31bhbgjh59ly3"; depends=[]; }; QuantPsyc = derive2 { name="QuantPsyc"; version="1.5"; sha256="1i9bh88r8zxndzjqsj14qw64gnvm5a9kvhjhzk3qsrvl3qzjgh93"; depends=[boot MASS]; }; QuantTools = derive2 { name="QuantTools"; version="0.5.7"; sha256="069rvh4yfar5dh6aj6p0q61gasvs9wr72x9pnj00lvyjlnv06p5n"; depends=[data_table fasttime R6 Rcpp RCurl readxl]; }; @@ -2744,21 +2867,19 @@ in with self; { QuantumClone = derive2 { name="QuantumClone"; version="1.0.0.6"; sha256="1520jgkzp8g7gv7ggqhvlrdnpdyhygqjgsd1my5jq30afdqj6qmp"; depends=[DEoptim doParallel foreach fpc ggplot2 gridExtra NbClust optimx]; }; QuasiSeq = derive2 { name="QuasiSeq"; version="1.0-10-2"; sha256="1mr43vys9l1n859lzlcakjrvjllybgrwl0p8mc28h7m87yjkj670"; depends=[edgeR mgcv pracma]; }; R_cache = derive2 { name="R.cache"; version="0.13.0"; sha256="1hf5cb7xvnca5zlh9245b5g62sgsaxwdhiv7x59yld37cydakm6k"; depends=[digest R_methodsS3 R_oo R_utils]; }; - R_devices = derive2 { name="R.devices"; version="2.15.1"; sha256="09gmzb87n1ybqwyp4jdpih3w3s7nqkr4hd1qhcqr57kp2pj9jp9x"; depends=[base64enc R_methodsS3 R_oo R_utils]; }; + R_devices = derive2 { name="R.devices"; version="2.16.0"; sha256="1f4jsa7b425rm1a0d00njx0pgvrvnhzf0xz2asq4yjhm4rhz0pbz"; depends=[base64enc R_methodsS3 R_oo R_utils]; }; R_filesets = derive2 { name="R.filesets"; version="2.12.1"; sha256="0grd3wk5xh7jgp10m78knj0snqyxqv7yir6wvz2wq5rabvcn9mab"; depends=[digest future_apply R_cache R_methodsS3 R_oo R_utils]; }; R_huge = derive2 { name="R.huge"; version="0.9.0"; sha256="13p558qalv60pgr24nsm6mi92ryj65rsbqa6pgdwy0snjqx12bgi"; depends=[R_methodsS3 R_oo R_utils]; }; - R_matlab = derive2 { name="R.matlab"; version="3.6.1"; sha256="013qi3iikikgib23cqg74vpp2ymsbw1zd6zny7m1km2js6gmfchh"; depends=[R_methodsS3 R_oo R_utils]; }; + R_matlab = derive2 { name="R.matlab"; version="3.6.2"; sha256="1fw6ny8xb2j088k3s9lzd15av3j6xc2bvbccyrp7yjx2f3s3i8qv"; depends=[R_methodsS3 R_oo R_utils]; }; R_methodsS3 = derive2 { name="R.methodsS3"; version="1.7.1"; sha256="11z6v2i7jl647wxi9p5z66yvfnnqv6s7fxqmz7w2gkb6j8wl1f24"; depends=[]; }; R_oo = derive2 { name="R.oo"; version="1.22.0"; sha256="0k6xwy93fpb2p7bs76lzk52br9rv5xnd9524xj8qyazv1132x1n0"; depends=[R_methodsS3]; }; - R_rsp = derive2 { name="R.rsp"; version="0.42.0"; sha256="1zcq0hzi0j7fvj2rs796a1i120wbr0387vck17rrd644awwbsbm0"; depends=[digest R_cache R_methodsS3 R_oo R_utils]; }; - R_utils = derive2 { name="R.utils"; version="2.6.0"; sha256="03j7hrs03kyj9qrjxyp5kqv4lpqqpk6xwbkzx6j15d8928yrjr2x"; depends=[R_methodsS3 R_oo]; }; + R_rsp = derive2 { name="R.rsp"; version="0.43.0"; sha256="0ax6781kfylx0acz0i3sqnpkxmrq73x29wwfic59ng7vj0ws0gyd"; depends=[digest R_cache R_methodsS3 R_oo R_utils]; }; + R_utils = derive2 { name="R.utils"; version="2.7.0"; sha256="0cxhn14a57x4gcyrwpfz1d6dw4xh0jcpqkb33hx8imnr340blh7n"; depends=[R_methodsS3 R_oo]; }; R0 = derive2 { name="R0"; version="1.2-6"; sha256="1yvcgchxlj7hkgqkw6g8pxnracxkld1grgykkcr6wbhminbylqv8"; depends=[MASS]; }; R1magic = derive2 { name="R1magic"; version="0.3.2"; sha256="1xfldr5y7pfdi6qljjvckknsv2wi9rnzwmqxkpgnyc96md2fvwjr"; depends=[]; }; R2BayesX = derive2 { name="R2BayesX"; version="1.1-1"; sha256="1ff8cscl839ykp7l34sscc8zqp516mh64igk7dfv9n02l40w8ypf"; depends=[BayesXsrc colorspace mgcv]; }; - R2Cuba = derive2 { name="R2Cuba"; version="1.1-0"; sha256="1zmlsambajzxkc9dawlqb0png8s502hwblq0vyhqgc08yf29b43w"; depends=[]; }; R2DGC = derive2 { name="R2DGC"; version="1.0.3"; sha256="0f84fmpf3m2s2p6bllvjs8rgnhwjy54adblv02dq8gakwvb4j2aw"; depends=[]; }; R2DT = derive2 { name="R2DT"; version="0.1"; sha256="0zydrdx6xdlacq6s01jwv4rv6ydmbwmiif40rilp8h76bim0kdbr"; depends=[data_table devFunc plyr]; }; - R2G2 = derive2 { name="R2G2"; version="1.0-2"; sha256="05d5vybvsi4pyr099916nk1l8sqszs9gaj2vhsx1jxxks8981na7"; depends=[]; }; R2HTML = derive2 { name="R2HTML"; version="2.3.2"; sha256="00kxny7hajs9r2kw63qk7d03ggdxx2j1g8vbrmzp806y8aczvik9"; depends=[]; }; R2MLwiN = derive2 { name="R2MLwiN"; version="0.8-5"; sha256="09p8xrxhcf6biy1mffv31p2hlr19s51f3n67az52f3xv5lyp9wm8"; depends=[coda digest doParallel foreach foreign lattice Matrix memisc rbugs texreg]; }; R2OpenBUGS = derive2 { name="R2OpenBUGS"; version="3.2-3.2"; sha256="1cxr93g0fkdv3lqdh63l2gcp7qn3q42pm1r6nzf35550k9ahkhnv"; depends=[boot coda]; }; @@ -2771,7 +2892,7 @@ in with self; { R3port = derive2 { name="R3port"; version="0.1.1"; sha256="0ww0sqjx0la03qx353h0y5wr5qpc5fir3gjy4fsxkw6jrsyx9vaz"; depends=[plyr reshape2 whisker]; }; R4CouchDB = derive2 { name="R4CouchDB"; version="0.7.5"; sha256="1wd1yqbs8m4zqvdm6x7mrcyk5b5pr4azm3r49nrilg8fnr2bk9rz"; depends=[bitops RCurl RJSONIO]; }; R4dfp = derive2 { name="R4dfp"; version="0.2-4"; sha256="02crzjphlq4hi2crh9lh8l0acmc1rgb3wr1x8sn56cwhq4xzqzcb"; depends=[]; }; - R6 = derive2 { name="R6"; version="2.2.2"; sha256="13xfdr19ca7ymisidsanm6w7hsk3qmy5l8c0mlz3nk48f7s5cxq8"; depends=[]; }; + R6 = derive2 { name="R6"; version="2.3.0"; sha256="1jgshp0x8a65rwyvk31slnfp7l153dk5826y2rxcd5lpclby3d85"; depends=[]; }; RAC = derive2 { name="RAC"; version="1.5"; sha256="0q0kk9j3blrnhv0rfmryc35lli5j4kds2vmjdpg77znagb45609k"; depends=[maps maptools matrixStats ncdf4 plotrix raster rgdal rgeos rstudioapi sp]; }; RAD = derive2 { name="RAD"; version="0.3"; sha256="0nmgsaykxavq2bskq5x0jvsxzsf4w2gqc0z80a59376li4vs9lpj"; depends=[MASS mvtnorm]; }; RADanalysis = derive2 { name="RADanalysis"; version="0.5.5"; sha256="1py07p24i1pky8wwyy8ajmkg6h2n7nbpxp1w6lrkiyl0p2kgjm20"; depends=[scales sfsmisc]; }; @@ -2780,20 +2901,21 @@ in with self; { RAMP = derive2 { name="RAMP"; version="2.0.1"; sha256="1n8h58j6v1xs6adrr4w4ha7pn1q2fh14dyg7zgpp2smv0j2b33dr"; depends=[]; }; RAMpath = derive2 { name="RAMpath"; version="0.4"; sha256="0blixfmgiq22hd356hrp4vbhfkkgh0a58143nhirjx3sav9pxc1v"; depends=[ellipse lavaan MASS]; }; RANKS = derive2 { name="RANKS"; version="1.0"; sha256="1lvaya9jlqrr9klqznw4fz5h5x0sw191ci74hpymb4gzhhxcbp27"; depends=[graph limma NetPreProc PerfMeas RBGL]; }; - RANN = derive2 { name="RANN"; version="2.5.1"; sha256="0il5i99vbcagnxvb15af5n37g04a4q1x96bz73zh3jhki9fpw9vm"; depends=[]; }; - RANN_L1 = derive2 { name="RANN.L1"; version="2.5"; sha256="0sjf92hdw9jczvq1wl5syckhvik7wv0k9vrrgw4nnnsabc25v9pf"; depends=[]; }; + RANN = derive2 { name="RANN"; version="2.6"; sha256="1r6rivh9ba4gwnzryip0aiwsbm46zma7nvd9z5y456p2dgzp9lii"; depends=[]; }; + RANN_L1 = derive2 { name="RANN.L1"; version="2.5.1"; sha256="0npkbphdk5m8lpga874yv8vld38ikn2rk8r5ysg0n4vcd1jxr1ac"; depends=[]; }; RAP = derive2 { name="RAP"; version="1.1"; sha256="18dclijs72p6gxawpg8hk7n512ah4by5jfg2jnrp8mz79ajmdgir"; depends=[]; }; RAPIDR = derive2 { name="RAPIDR"; version="0.1.1"; sha256="14cnw4jjs5anb55zlg1yj6qc9yr51rsamigq2q7h8ypj2ggnna1d"; depends=[Biostrings data_table GenomicAlignments GenomicRanges PropCIs Rsamtools]; }; RAPTOR = derive2 { name="RAPTOR"; version="1.0.0"; sha256="1i3p3qa56ghcwh69vv3gnxnw13cbd99ms654j2bqr7g9qb7nl8vj"; depends=[mgcv]; }; RATest = derive2 { name="RATest"; version="0.1.2"; sha256="0cxb82kzmywgslf6hfjl6v015s64jh483bzxnhph420mcp3ysbfk"; depends=[ggplot2 gridExtra quantreg]; }; RAdwords = derive2 { name="RAdwords"; version="0.1.17"; sha256="1w6fkg7a5dp6s80fzcgs65f0d7qp43l4yawh00ly0b750f2fnxvp"; depends=[RCurl rjson]; }; - RApiDatetime = derive2 { name="RApiDatetime"; version="0.0.3"; sha256="0g5sdq6sl7cvsj9fgqhcdxjkrfi53078r0mbzvf69cvz38y5x3sm"; depends=[]; }; + RApiDatetime = derive2 { name="RApiDatetime"; version="0.0.4"; sha256="0z08xwdn3vzwmprx5yh2xip5bqk13zrd47lwnsa2yin2phz6yry1"; depends=[]; }; RApiSerialize = derive2 { name="RApiSerialize"; version="0.1.0"; sha256="0gm2j8kh40imhncwwx1sx9kmraaxcxycvgwls53lcyy2ap344k9j"; depends=[]; }; RAppArmor = derive2 { name="RAppArmor"; version="2.0.2"; sha256="18zmqqh4rnbnaiwi60jfp4xi8fp63ydr3jk9w4ijmy6s4hkpp75g"; depends=[]; }; RArcInfo = derive2 { name="RArcInfo"; version="0.4-12"; sha256="1j1c27g2gmnxwslff4l0zivi48qxvpshmi7s9wd21cf5id0y4za4"; depends=[RColorBrewer]; }; RBMRB = derive2 { name="RBMRB"; version="2.1.2"; sha256="1m6n2kfg83mlfy22k75hy5zjf547v0rdwk9w6l04yfyrr6himbr8"; depends=[data_table ggplot2 httr plotly rjson]; }; RBPcurve = derive2 { name="RBPcurve"; version="1.2"; sha256="0zkfvnhm780vid4qqdrx9mnc6jxxrmrnq47pqvk35rm3m4l96782"; depends=[BBmisc checkmate mlr shape TeachingDemos]; }; - RBesT = derive2 { name="RBesT"; version="1.3-3"; sha256="0pink9jza2pfm1vqmzgp0pcyg9a4ak4c9igcxj692np82mv8hi0j"; depends=[assertthat bayesplot BH checkmate dplyr Formula ggplot2 lme4 mvtnorm Rcpp RcppEigen rstan StanHeaders]; }; + RBesT = derive2 { name="RBesT"; version="1.3-4"; sha256="1p74vn1651vyc9ydrp80fimj13p5bwmc56paxbh91liqsw0sd4b2"; depends=[assertthat bayesplot BH checkmate dplyr Formula ggplot2 mvtnorm Rcpp RcppEigen rstan StanHeaders]; }; + RBitmoji = derive2 { name="RBitmoji"; version="0.0.2"; sha256="1v9qj3vmqsvnccsy735nbflmd81183h2flm0f1ckd4kl08r2fr3f"; depends=[getPass httr jsonlite png RCurl]; }; RCA = derive2 { name="RCA"; version="2.0"; sha256="0pidb5czrf0dc3ywy6cwm5akgsc62pvf94kfyxibzmd1favykx1h"; depends=[gplots igraph]; }; RCEIM = derive2 { name="RCEIM"; version="0.3"; sha256="1kil5r88b6lf8vxmswz0wn0hhjxjm8jmlcl5kxjwl6fwjyy2z120"; depends=[]; }; RCMIP5 = derive2 { name="RCMIP5"; version="1.2.0"; sha256="0bwp1ln0y48g2d0bj9b47y0rlwffzv0pi6gjfzv4sg5anhswc9x7"; depends=[abind assertthat digest dplyr Matrix]; }; @@ -2810,8 +2932,8 @@ in with self; { RConics = derive2 { name="RConics"; version="1.0"; sha256="1lwr7hi1102gm8fi9k5ra24s0rjmnkccihhqn3byckqx6y8kq7ds"; depends=[]; }; RCriteo = derive2 { name="RCriteo"; version="1.0.2"; sha256="1vyhnblw9zr5h6c25lf76p9vn95k8vr0hpq1sjkccdwl9yvsyhfy"; depends=[httr plyr RCurl XML]; }; RCrypto = derive2 { name="RCrypto"; version="0.1.0"; sha256="1lw7hq5ks36fixk0g3gcy4nw21ygwc14jq840hnhyds4glywfpvm"; depends=[dplyr httr jsonlite]; }; - RCurl = derive2 { name="RCurl"; version="1.95-4.10"; sha256="02pyh6kvsfbwgccf8v77aa3ky21kps1rpgaii20wmridrgqj90vg"; depends=[bitops]; }; - RCzechia = derive2 { name="RCzechia"; version="1.2.6"; sha256="03zp8y76084l2zjzf9bbfhig7gi01a21gnjfiajzi8q851nfgl29"; depends=[httr lwgeom magrittr sf]; }; + RCurl = derive2 { name="RCurl"; version="1.95-4.11"; sha256="1gwpikvd5r0fjxp4cbn3mz80d52xmlfgx07dk06lc35qylf0jakr"; depends=[bitops]; }; + RCzechia = derive2 { name="RCzechia"; version="1.3.0"; sha256="0c002x07qgnn3vfrvyr12a2vk3dbrabi2qq9a3acnff7isk3hq1m"; depends=[httr lwgeom magrittr sf]; }; RDIDQ = derive2 { name="RDIDQ"; version="1.0"; sha256="09gincmxv20srh4h82ld1ifwncaibic9b30i56zhy0w35353pxm2"; depends=[]; }; RDML = derive2 { name="RDML"; version="0.9-9"; sha256="0amlr7mxp7175a7rd3jw7lhyvp3lnr01y81l27sl148sfb85zar6"; depends=[checkmate data_table lubridate pipeR R6 readxl rlist stringr xml2]; }; RDS = derive2 { name="RDS"; version="0.8-1"; sha256="18xn0ci35xs2myzj8rny6pp08cn8ljl3l4fdgaqp05fphgb5fh8j"; depends=[anytime ergm ggplot2 gridExtra Hmisc igraph isotone network reshape2 scales]; }; @@ -2821,13 +2943,14 @@ in with self; { RDieHarder = derive2 { name="RDieHarder"; version="0.1.4"; sha256="0p37r45fy75a0is2mycvhrz705707acdb2858yd9qx70n6sg3jph"; depends=[]; }; RDocumentation = derive2 { name="RDocumentation"; version="0.8.2"; sha256="0qdn3c5xbjyrhk56wfch50xpyyfd4f79hs0v00cqk9iwsnjlwmb5"; depends=[httr proto rjson]; }; RDota2 = derive2 { name="RDota2"; version="0.1.6"; sha256="0fjsgg4dmzw2xwrf8jxq0f2d7f78bf67bl3ms5qcjk9kskfnymag"; depends=[httr jsonlite]; }; - REAT = derive2 { name="REAT"; version="2.0.0"; sha256="0al0502h1iyd03c4hsy35nxz3nbvvfshi5jxxvxlh1x4bxvpy1vs"; depends=[]; }; + REAT = derive2 { name="REAT"; version="2.1.0"; sha256="16yrpdvy33arjcdn6zq674vhkm4m819a6i6ls1scwd8ag9fv3zxj"; depends=[]; }; REBayes = derive2 { name="REBayes"; version="1.3"; sha256="0byd7587vddffplzp8kc2aakab61pck2r25rajxfn0rsvl5yvxyx"; depends=[Matrix reliaR Rmosek]; }; RECA = derive2 { name="RECA"; version="1.6"; sha256="0bb6phd7f8rrz7754bn6sp53jrvcl6xg6lkj330945xwia1dhpxi"; depends=[]; }; REDCapR = derive2 { name="REDCapR"; version="0.9.8"; sha256="14psw0sxlyig4nf968n997djwf80hgy5ia2g0bp8rdpn8lrj01g6"; depends=[data_table dplyr httr magrittr readr tibble tidyr]; }; REEMtree = derive2 { name="REEMtree"; version="0.90.3"; sha256="01sp36p12ky8vgsz6aik80w4abs70idr9sn4627lf94r92wwwsbc"; depends=[nlme rpart]; }; REGENT = derive2 { name="REGENT"; version="1.0.6"; sha256="1f2sjqkhw3rbmwbcmx7l7imj696kblisi8y3fz77xygbcbxa6rmq"; depends=[]; }; - REIDS = derive2 { name="REIDS"; version="0.0.2"; sha256="1njyvc818rwwg109ry8nb2p05rf9yh6zsydvww2ribynlsr2rir1"; depends=[aroma_affymetrix aroma_core biomaRt data_table GenomeGraphs lmtest MCMCpack RColorBrewer]; }; + REIDS = derive2 { name="REIDS"; version="0.1.0"; sha256="10mznsba9bmv9754zg6pzrwlrgkcki7zfr995nrlsg5fjphqyqg9"; depends=[aroma_affymetrix aroma_core biomaRt data_table GenomeGraphs lmtest MCMCpack RColorBrewer]; }; + REPLesentR = derive2 { name="REPLesentR"; version="0.2.0"; sha256="0j3zlbmx5mfnp3cr9cf02f2yl8g2lji4smpzjhffx0hac2ina9y8"; depends=[dat knitr modules]; }; REPPlab = derive2 { name="REPPlab"; version="0.9.4"; sha256="1pf8zrjdzziyq2lw31p1ij7cn4j7pf659ygxv8wpfnmcmpaqbc45"; depends=[lattice LDRTools rJava]; }; REPTILE = derive2 { name="REPTILE"; version="1.0"; sha256="11swy4jrmmb0xjjxm1wyxd628fxxcqnialvijdrjwjpdbvraz4gq"; depends=[doParallel flux foreach optparse randomForest]; }; REQS = derive2 { name="REQS"; version="0.8-12"; sha256="049glqhc8h8gf425kmj92jv70917dsigpm37diby0c6hb4jrg8ka"; depends=[gtools]; }; @@ -2852,10 +2975,12 @@ in with self; { RGCCA = derive2 { name="RGCCA"; version="2.1.2"; sha256="0zcxakqnmih0243y5b6r9nmcfanzxd6q344pd5bca5pnm3y43wr0"; depends=[Deriv MASS]; }; RGENERATE = derive2 { name="RGENERATE"; version="1.3.5"; sha256="12dq04xpl06zhkzwqx3zy0bkpvb5phbdj2inxsyczf6d4dk209mb"; depends=[RMAWGEN]; }; RGENERATEPREC = derive2 { name="RGENERATEPREC"; version="1.2"; sha256="1w28yfzk3ilbz1r9fsc76cigyrnzzhsfm3a81ff8g26za7cb8vjp"; depends=[blockmatrix copula Matrix RGENERATE RMAWGEN stringr]; }; - RGF = derive2 { name="RGF"; version="1.0.3"; sha256="00s360kba9w58bzyhikh487gymryq0g62zhyr3zd2vfm4x0rl0ms"; depends=[Matrix R6 reticulate]; }; + RGF = derive2 { name="RGF"; version="1.0.5"; sha256="0dd3ziaprarvg2bmm1vci5fpqp2xfa6rk60zx2cagkqgnly152zn"; depends=[Matrix R6 reticulate]; }; RGIFT = derive2 { name="RGIFT"; version="0.1-5"; sha256="1745fs4bq0ss39fiwljspvrmnkgbbpc1fjvhvcrsmp2iizq12sgn"; depends=[]; }; + RGeckoboard = derive2 { name="RGeckoboard"; version="0.1-5"; sha256="0h7x3kdmlba9siwcnf313ajmz2jsmyhl7pndzs7qaqina3hkl46r"; depends=[httr jsonlite]; }; RGenetics = derive2 { name="RGenetics"; version="0.1"; sha256="0x5sspd67hh08qm62whlnnd838m0np29q3bfzgwp6j85lhil3jrx"; depends=[]; }; RGeode = derive2 { name="RGeode"; version="0.1.0"; sha256="1g8ha6zg4pvi8qimiihsa6rjfdcyj0q526l44jajjbqczmwg59lv"; depends=[MASS Rcpp]; }; + RGoogleAnalytics = derive2 { name="RGoogleAnalytics"; version="0.1.6"; sha256="05wbcdksx5g6y7x4r1pvc9is3afxbpdxdbmc6b4jhn46rg4228z4"; depends=[digest httr lubridate]; }; RGoogleAnalyticsPremium = derive2 { name="RGoogleAnalyticsPremium"; version="0.1.1"; sha256="0d22pdd5kvnrspikfb66ny07pgx96rvykr0zi78rwn6g1symdb4q"; depends=[httr jsonlite lubridate]; }; RGoogleFit = derive2 { name="RGoogleFit"; version="0.3.1"; sha256="0g4r5vb9zv6mqym1mh028ic9hkmlpklrhq4ks5sys7y60ps893k1"; depends=[bit64 httr jsonlite RCurl]; }; RGraphics = derive2 { name="RGraphics"; version="2.0-14"; sha256="0bv95g17pvpq3nji0akphdaznh9k85hf5z78qypxwfqr76brxd05"; depends=[ggplot2 lattice]; }; @@ -2878,18 +3003,19 @@ in with self; { RInside = derive2 { name="RInside"; version="0.2.14"; sha256="1ks9hs78s2vgdp9nfpzwifkqnh3vnaqwand51yh9r1zyjc4k9rcd"; depends=[Rcpp]; }; RItools = derive2 { name="RItools"; version="0.1-16"; sha256="0rs5gzlpsn8ci4s2pqaarzwd6y41vv6l4188p93x0vl2jcpd77vl"; depends=[abind SparseM survival svd xtable]; }; RJDBC = derive2 { name="RJDBC"; version="0.2-7.1"; sha256="1d36js3kwlghsjxfhv7rl8nvg210hxwrx8sdxrxb0inwlqsash25"; depends=[DBI rJava]; }; - RJSDMX = derive2 { name="RJSDMX"; version="1.9-3.1"; sha256="0iz4p9kl9i61sd23cqfwgwmqb48nz882mvir7p7sg5ysm0b65ijd"; depends=[rJava zoo]; }; + RJSDMX = derive2 { name="RJSDMX"; version="2.1-0"; sha256="1z1fhm6as9m35v11n5npv3mlaaal7w5c04g4yl2p26ljsmssfbsh"; depends=[rJava zoo]; }; RJSONIO = derive2 { name="RJSONIO"; version="1.3-0"; sha256="1dwgyiy19sixhy6yclqcaaxswbmpq7digyjjxhy1qv0wfsvk94qi"; depends=[]; }; RJSplot = derive2 { name="RJSplot"; version="2.5"; sha256="0p2zqbq29pfjl703wqqjzgmif7yfzz7l8rzarjf5axkdy7w7fcyl"; depends=[]; }; RJaCGH = derive2 { name="RJaCGH"; version="2.0.4"; sha256="1a8nd0w73dvxpamzi2addwr6q3rxhnnpa1girnlwbd1j1dll0bz6"; depends=[]; }; RJafroc = derive2 { name="RJafroc"; version="1.0.2"; sha256="099q1ajngj147szdnnyx2yi8samc7vbjbvygafgwr20dbvp07wzg"; depends=[bbmle binom caTools ggplot2 mvtnorm numDeriv Rcpp stringr xlsx]; }; RKEA = derive2 { name="RKEA"; version="0.0-6"; sha256="1dncplg83b4zznh1zh90wr8jv5259cy93imrry86c5kqdijmhrrp"; depends=[rJava RKEAjars tm]; }; RKEAjars = derive2 { name="RKEAjars"; version="5.0-3"; sha256="0sm7dkdprmqh319jc43ra7qbk4qq0b2kdj9zs9mjcjz58gcrkl7s"; depends=[rJava]; }; + RKEEL = derive2 { name="RKEEL"; version="1.2.3"; sha256="0w4ahialryzazla0xdfy6ci9v60sn57rmafhcpjp6vdjsy2r27r2"; depends=[arules doParallel foreach gdata Matrix pmml R6 rJava RKEELdata RKEELjars XML]; }; RKEELdata = derive2 { name="RKEELdata"; version="1.0.5"; sha256="1swzqw6j006ya48ahg6n1g8faxhqiv9v5q1zrnihpzj6868lf7y3"; depends=[]; }; RKEELjars = derive2 { name="RKEELjars"; version="1.0.18"; sha256="0gnjpqkm0bl6wpy9fhma6gfm6ngw786jv01kkbxz072hp1swrgmx"; depends=[downloader]; }; RKlout = derive2 { name="RKlout"; version="1.0"; sha256="17mx099393b1m9dl3l5xjcpzmb9n3cpjghb90m9nidccxkhacmqf"; depends=[RCurl]; }; RLRsim = derive2 { name="RLRsim"; version="3.1-3"; sha256="1r0xqay3jfg435dh9fqc6yy73wjffp658da194rx63vpfhshgz8w"; depends=[lme4 mgcv nlme Rcpp]; }; - RLT = derive2 { name="RLT"; version="3.2.1"; sha256="14im1lvsfpl1vlhc3fmmi4vq41br48mlgqqnwnj0qqxawzzs5738"; depends=[]; }; + RLT = derive2 { name="RLT"; version="3.2.2"; sha256="1a8cip975z99g8ljng4y86wv1gf1xwg0sqnxz79wj6zxpw8fk37c"; depends=[]; }; RLeafAngle = derive2 { name="RLeafAngle"; version="1.0"; sha256="1anks22hn6qpac556p99kilkhc80h572dvcyz3wj1nqffdrhgrh3"; depends=[]; }; RLogicalOps = derive2 { name="RLogicalOps"; version="0.1"; sha256="1qyn80x3x3bb5wgzyzw6pxs8a6q26yq1fkmkz7f5wywsnrj8hzfj"; depends=[rstackdeque stringr]; }; RLumModel = derive2 { name="RLumModel"; version="0.2.3"; sha256="059nqbvy13jjgzhp4n9afqkc3dbv06aml5v5ffkhpx8kcmv48xp1"; depends=[deSolve Luminescence Rcpp RcppArmadillo]; }; @@ -2898,20 +3024,18 @@ in with self; { RM2 = derive2 { name="RM2"; version="0.0"; sha256="1v57nhwg8jrpv4zi22fhrphw0p0haynq13pg9k992sb0c72dx70a"; depends=[msm]; }; RM2006 = derive2 { name="RM2006"; version="0.1.0"; sha256="1qjvdh89jql1fl6ia76g766y1igkshlv0slqmpi0y3bn40413snb"; depends=[]; }; RMAWGEN = derive2 { name="RMAWGEN"; version="1.3.3"; sha256="0spc0vszbxfpfp3kqdj0gnb90nvn50qwalq3mw8151b8h1swmf3l"; depends=[chron date vars]; }; - RMC = derive2 { name="RMC"; version="0.2"; sha256="1sc4nsjmaw2ajm8bka7r4mf73zxqhnvx23kl4v20pfpy9rhgd0h6"; depends=[]; }; - RMCriteria = derive2 { name="RMCriteria"; version="0.1.0"; sha256="19i7idpkl7ipqcib6rlmbi77n1il9v2hy6s9yyia6m9sz1smxakl"; depends=[dplyr ggnetwork ggplot2 gridExtra linprog lpSolve network pastecs Rcpp RcppEigen RcppNumerical]; }; + RMCriteria = derive2 { name="RMCriteria"; version="0.1.1"; sha256="195kamlc9qfpnv5vbimqn3m0qzac8ixy2b26xm533m51rv5k9njd"; depends=[dplyr ggnetwork ggplot2 gridExtra linprog lpSolve network pastecs Rcpp RcppEigen RcppNumerical]; }; RMKdiscrete = derive2 { name="RMKdiscrete"; version="0.1"; sha256="0b4adw46sn98qmy4nxv5l5svcjrp5532x7slfhhgsskqx408lzjf"; depends=[]; }; - RMOA = derive2 { name="RMOA"; version="1.0"; sha256="01mrl6544wv2jc8b8gk1whs865sbv4id5sywnf1hq3r7g8wgs8lp"; depends=[rJava RMOAjars]; }; - RMOAjars = derive2 { name="RMOAjars"; version="1.0"; sha256="0k3w37dwyyvfxh7a9l76cyjm27qq1clxppc5h16li2m8x68fvpjq"; depends=[rJava]; }; + RMOA = derive2 { name="RMOA"; version="1.0.1"; sha256="1ppbwqdfxzk1ayms0rqw22l0r8vkk8av39spwpq8avgl6vssw8c4"; depends=[rJava RMOAjars]; }; + RMOAjars = derive2 { name="RMOAjars"; version="1.0.1"; sha256="0qzpwsbndn8fw9560z9h9w9ff9bx6xj7mr50683q1n3dpn5z637i"; depends=[rJava]; }; RMRAINGEN = derive2 { name="RMRAINGEN"; version="1.0"; sha256="175kd803a44yblq2jw5mrn2qv4piiy249577lf684bmmajf4ird4"; depends=[blockmatrix copula Matrix RGENERATE RMAWGEN]; }; RMThreshold = derive2 { name="RMThreshold"; version="1.1"; sha256="0wkc42vcggib002ad6ch43h6avpdgl12szrrrfd2p0wl72cwn5n1"; depends=[Matrix png]; }; RMTstat = derive2 { name="RMTstat"; version="0.3"; sha256="1nn25q4kmh9kj975sxkrpa97vh5irqrlqhwsfinbck6h6ia4rsw1"; depends=[]; }; RMallow = derive2 { name="RMallow"; version="1.0"; sha256="0prd5fc98mlxnwjhscmghw62jhq9rj5jk8qf4fnaa2a718yxf9b5"; depends=[combinat]; }; RMariaDB = derive2 { name="RMariaDB"; version="1.0.6"; sha256="19pjxgz9h3bb89ra6ha6mbnzyz1sagmm82qd57y0rbrsvwn0pk2i"; depends=[BH bit64 DBI hms plogr Rcpp]; }; - RMark = derive2 { name="RMark"; version="2.2.4"; sha256="1vns8bl3fnk6hkwmm0wl2c6lgyv3vabsk07kkxrxrl1nzy11wj3a"; depends=[coda matrixcalc msm]; }; + RMark = derive2 { name="RMark"; version="2.2.5"; sha256="16nbm8fl8zdllgkx2hcjziakfrdwahxzn6d5mwigd4wcyvygkzzv"; depends=[coda matrixcalc msm]; }; RMediation = derive2 { name="RMediation"; version="1.1.4"; sha256="19idqx0hwljbcfrpqwa81k7cxbd8kv77ji8yi4n4p7517jbkzma6"; depends=[e1071 lavaan MASS]; }; - RMixpanel = derive2 { name="RMixpanel"; version="0.6-3"; sha256="025fg36jwq44y5m7msmjql3m0avc0hl0iw49wap0fvmzy5qn24qq"; depends=[base64enc jsonlite RCurl uuid]; }; - RMongo = derive2 { name="RMongo"; version="0.0.25"; sha256="1anybw64bcipwsjc880ywzj0mxkgcj6q0aszdad6zd4zlbm444pc"; depends=[rJava]; }; + RMixpanel = derive2 { name="RMixpanel"; version="0.7-1"; sha256="1xwmmfvky49n1l0w3kwcyaf2h4rhzz4k5icjwvpc90fqk8sxib6a"; depends=[base64enc jsonlite RCurl uuid]; }; RMySQL = derive2 { name="RMySQL"; version="0.10.15"; sha256="0bmc7w5fnkjaf333sgc0hskiy332m9gmfaxg0yzkjxscpizdw43n"; depends=[DBI]; }; RNAseqNet = derive2 { name="RNAseqNet"; version="0.1.2"; sha256="07wk0i8iz3cvkiqawxhm61g3nka8adw0zrrv60zx329gg49w0ycl"; depends=[ggplot2 glmnet hot_deck igraph PoiClaClu]; }; RNAsmc = derive2 { name="RNAsmc"; version="0.3.0"; sha256="15k88skwqcd0m4m502fipdl1iind4mzizqdz4h63izpqfxijl3iz"; depends=[RRNA]; }; @@ -2921,15 +3045,15 @@ in with self; { RND = derive2 { name="RND"; version="1.2"; sha256="1rl5apgw43c841z0lapi9z2jn979dvqh4x1qkqx1ad77zcq87c85"; depends=[]; }; RNGforGPD = derive2 { name="RNGforGPD"; version="1.0"; sha256="11n7fl1rrgnknn61qw6dh74amhakkjk5wyg0rms554lw9cn86x2v"; depends=[corpcor Matrix mvtnorm VGAM]; }; RNHANES = derive2 { name="RNHANES"; version="1.1.0"; sha256="045ykpgxvc22blbp47ysbk6a6x4akjd39pjr114cr23s7f48g6h4"; depends=[dplyr foreign rvest survey xml2]; }; - RNOmni = derive2 { name="RNOmni"; version="0.4.0"; sha256="1dk7ydbdhz92ixgm7carsalsdah4s3mshlkri3b69r9maxakkkjr"; depends=[abind foreach mvtnorm plyr Rcpp RcppEigen]; }; + RNOmni = derive2 { name="RNOmni"; version="0.5.0"; sha256="1vfyri5mpc67295kmqg1vxc1brg6piyljgv3k62f6k0ynvddyd9x"; depends=[abind foreach plyr Rcpp RcppEigen]; }; RNRCS = derive2 { name="RNRCS"; version="0.2.5"; sha256="19q78l8mh4701vqvr36vqc87n39s5ivzhiy5lvnxbd4dgibk1jr2"; depends=[ggplot2 magrittr rvest xml2]; }; RNaviCell = derive2 { name="RNaviCell"; version="0.2"; sha256="15k8hkagn5520fy7x672fy329s2v7l0x44s44f6v7ql9mmg4b635"; depends=[RCurl RJSONIO]; }; - RNeXML = derive2 { name="RNeXML"; version="2.1.1"; sha256="1hnw7m5sasbs7si3aivrg984fpjpya093zzk0jjigba2gq375x4p"; depends=[ape dplyr httr lazyeval plyr reshape2 stringr tidyr uuid XML xml2]; }; + RNeXML = derive2 { name="RNeXML"; version="2.1.2"; sha256="0ax5mm8fa4rh1lqnhr9jspwnb6a098yja7ycssjj1lac0z7cs3c6"; depends=[ape dplyr httr lazyeval plyr reshape2 stringr tidyr uuid XML xml2]; }; RNentropy = derive2 { name="RNentropy"; version="1.2.2"; sha256="0chvmrvpyyghilwb63y6pd1zp94i5qhpv5w19x9nw0ypk86pp2dj"; depends=[]; }; RNetCDF = derive2 { name="RNetCDF"; version="1.9-1"; sha256="0idfskxb1k8x0zzl6b0kgskdxn7zr49gw9xcj870ah9zp93iwnkx"; depends=[]; }; RNetLogo = derive2 { name="RNetLogo"; version="1.0-4"; sha256="1z7jp454k197c0zbkn64zmf25wadkiznv3w2csgiz917cbx6xcn1"; depends=[igraph rJava]; }; RNewsflow = derive2 { name="RNewsflow"; version="1.0.1"; sha256="1vxzcsiapnq8101iq4w73m9k8cq2khgcsxak71x72n295r7qpsd6"; depends=[data_table igraph Matrix plyr scales slam tm wordcloud]; }; - RNifti = derive2 { name="RNifti"; version="0.8.1"; sha256="1m1hw6mq47afa7kk36xkk3sb0yv28qwz503a7wq5c4djyp262mgh"; depends=[Rcpp]; }; + RNifti = derive2 { name="RNifti"; version="0.10.0"; sha256="07sfzps4yg5zdhbxh6i4rbjvbjvvf2d8i9jcf64ywbmi557sw1zv"; depends=[Rcpp]; }; RNiftyReg = derive2 { name="RNiftyReg"; version="2.6.1"; sha256="07ibpdh2z01jh9nmhs7lcz630fdq6lwal6w58np3axgcd91ch1mj"; depends=[ore Rcpp RcppEigen RNifti]; }; ROAuth = derive2 { name="ROAuth"; version="0.9.6"; sha256="0vhsp8qybrl94898m2znqs7hmlnlbsh8sm0q093dwdb2lzrqww4m"; depends=[digest RCurl]; }; ROC632 = derive2 { name="ROC632"; version="0.6"; sha256="0vgv4rclvb79mfj1phs2hmxhwchpc5rj43hvsj6bp7wv8cahfg5g"; depends=[penalized survival survivalROC]; }; @@ -2955,25 +3079,26 @@ in with self; { ROI_plugin_lpsolve = derive2 { name="ROI.plugin.lpsolve"; version="0.3-1"; sha256="0i1skxk88s8cgxbr2hl5z8h88aqchrfs3206dfb92libw3yi1vas"; depends=[lpSolveAPI ROI]; }; ROI_plugin_msbinlp = derive2 { name="ROI.plugin.msbinlp"; version="0.3-0"; sha256="00zvjqq2sj7iaymc0lrf5lmqfbqilwh8llmq841lvsmbps45w41k"; depends=[ROI slam]; }; ROI_plugin_neos = derive2 { name="ROI.plugin.neos"; version="0.3-0"; sha256="0hs64qbna8ggmn83g903kbxiyv5ghh2454xca0caf14x9lszv02j"; depends=[ROI xml2 xmlrpc2]; }; - ROI_plugin_nloptr = derive2 { name="ROI.plugin.nloptr"; version="0.3-0"; sha256="0niq0q08033vcm59wflilii7lciqixcpf13a93hgdaypdca8lxcw"; depends=[nloptr ROI]; }; + ROI_plugin_nloptr = derive2 { name="ROI.plugin.nloptr"; version="0.3-1"; sha256="1cy6q0cchd4rqmd2gxmg83q7cg93w6nnafjqsjxlj13773jr46f0"; depends=[nloptr ROI]; }; ROI_plugin_optimx = derive2 { name="ROI.plugin.optimx"; version="0.3-0"; sha256="0hwjgwmaclq6y5mfmykjrchpyb632qzwcvvs1nnanmrh3yhfmpg9"; depends=[optimx ROI]; }; ROI_plugin_qpoases = derive2 { name="ROI.plugin.qpoases"; version="0.3-1"; sha256="0ph6l85hrsc40wl443kkxywb2i0cjyh38g20000rnzhygl8kd7db"; depends=[Matrix Rcpp ROI slam]; }; ROI_plugin_quadprog = derive2 { name="ROI.plugin.quadprog"; version="0.2-5"; sha256="1c4fd16kgg60gfs52xc64ii4kzl8fb8qz3rpy69d08avb4q6grir"; depends=[quadprog ROI slam]; }; ROI_plugin_scs = derive2 { name="ROI.plugin.scs"; version="0.3-0"; sha256="0krlrmw85j1g35pvh4ig10djb6y6akyrfymkfk4dqg751w7mb4fm"; depends=[Matrix ROI scs slam]; }; ROI_plugin_symphony = derive2 { name="ROI.plugin.symphony"; version="0.2-5"; sha256="1kpa82g33i2fdcnkpcqdpslj14ilrl7cp0fq1jmp4vj8ddz1s9g5"; depends=[ROI Rsymphony slam]; }; ROMIplot = derive2 { name="ROMIplot"; version="1.0"; sha256="1njbsvnz7wrsv9l1p70p1ygmckaibz5i6jmvb0sfalp5jdcgl85n"; depends=[MortalitySmooth RCurl]; }; + ROP = derive2 { name="ROP"; version="1.0"; sha256="12gh83r3hp1qdmw3p5rr1wfhsh90pirx67q456gl9ai6zgd8nkq8"; depends=[ROCR]; }; ROSE = derive2 { name="ROSE"; version="0.0-3"; sha256="12b9grh3rgaa07blbnxy8nvy5gvpd45m43bfqb3m4k3d0655jpk2"; depends=[]; }; ROlogit = derive2 { name="ROlogit"; version="0.1.2"; sha256="09j9c24f7plzpnnhpmzdi4gapb7w1377ksjwk6i2xpyr4bfsrr5k"; depends=[evd survival]; }; ROpenDota = derive2 { name="ROpenDota"; version="0.1.2"; sha256="17s73yj2w5hlpy09ad83m4s2d9shg5h4zg64wvbp1ivyvpp7l308"; depends=[jsonlite RCurl]; }; ROpenFIGI = derive2 { name="ROpenFIGI"; version="0.2.8"; sha256="0fvd25vsqkgi3jv4s2lnfag5qksyzyb48d7rhfw6z8piz37n4xaj"; depends=[httr jsonlite]; }; ROpenWeatherMap = derive2 { name="ROpenWeatherMap"; version="1.1"; sha256="0h1yw93v06bx8svhghh1fsrf837qax9896klh64b06djpgg9ngb9"; depends=[httr jsonlite RCurl]; }; - ROptEst = derive2 { name="ROptEst"; version="1.0.1"; sha256="0160xs3bmk1bdan7gkibc50qfzxlmi413grvs0bib74xlr0x2kgj"; depends=[distr distrEx distrMod RandVar RobAStBase startupmsg]; }; - ROptEstOld = derive2 { name="ROptEstOld"; version="0.9.2"; sha256="0blf34xff9pjfy983xm7a27xqkh9173nk64ysas6f0g4h31gh8ax"; depends=[distr distrEx evd RandVar]; }; - ROptRegTS = derive2 { name="ROptRegTS"; version="0.9.1"; sha256="1a8pbn63wh2w2n409yzbwvarvhphcn82rdqjh407ch3k3x6jz3r5"; depends=[distr distrEx RandVar ROptEstOld]; }; - ROptSpace = derive2 { name="ROptSpace"; version="0.1.2"; sha256="0g5v4kf5kkylc3agizv2r534dnbgkjap1x146hdgl4jx2ggddnfk"; depends=[Rdpack]; }; + ROptEst = derive2 { name="ROptEst"; version="1.1.0"; sha256="147418w2njjqb9f9iga4ap7vmxi80y1np6ksgx8g546daswmdclp"; depends=[distr distrEx distrMod MASS RandVar RobAStBase startupmsg]; }; + ROptEstOld = derive2 { name="ROptEstOld"; version="1.1.0"; sha256="0wmwijzh614angm272glyikn8g64arj11an58knrgnvjc3lz8rx6"; depends=[distr distrEx evd RandVar]; }; + ROptRegTS = derive2 { name="ROptRegTS"; version="1.1.0"; sha256="1kjmyn182283llb02kf0ky1fyvw5l4p21q9s64y3hi5pahrqmr1v"; depends=[distr distrEx RandVar ROptEstOld]; }; + ROptSpace = derive2 { name="ROptSpace"; version="0.2.0"; sha256="119b3q43rkqhyprs0vx9wwsddq3awbj2mizzwqhpjjzz4gp5v866"; depends=[Rdpack]; }; ROptimizely = derive2 { name="ROptimizely"; version="0.2.0"; sha256="059zfn6y687h989wryvpqwgnp9njrrr4ys0gf1ql4pw85b2c50dy"; depends=[httr jsonlite]; }; ROracle = derive2 { name="ROracle"; version="1.3-1"; sha256="07zqzwaq5iqkjcmns2ahl1l71xjlznialb3dbyl4lwsh3p3fhf2n"; depends=[DBI]; }; - RPANDA = derive2 { name="RPANDA"; version="1.3"; sha256="0rah5l5nfjs65zxgsgsy3q3vaph6qkr7p41x3arfhjsyma96p0zn"; depends=[ape BioGeoBEARS cluster corpcor deSolve fpc igraph mvMORPH mvtnorm phytools picante pspline pvclust TESS]; }; + RPANDA = derive2 { name="RPANDA"; version="1.4"; sha256="005dc04h0lv2fi6i3qspyqyd0c134ad9c80ar3m6ahqzk369kq6w"; depends=[ape BioGeoBEARS cluster corpcor deSolve fpc geiger glassoFast igraph mvMORPH mvtnorm phytools picante pspline pvclust TESS]; }; RPCLR = derive2 { name="RPCLR"; version="1.0"; sha256="03kpyszsjb656lfwx2yszv0a9ygxs1x1dla6mpkhcnqw00684fab"; depends=[MASS survival]; }; RPEXE_RPEXT = derive2 { name="RPEXE.RPEXT"; version="0.0.1"; sha256="0m5ml8ywxrf66mjz6m3xp1lajd7wdq9g7xsaln8n7ykq7h5615fc"; depends=[]; }; RPEnsemble = derive2 { name="RPEnsemble"; version="0.4"; sha256="0y9g22swcz0m5jbzi87ahxw27fb3jlf3iwvxb73kkzixqlvksw9y"; depends=[class MASS]; }; @@ -2981,41 +3106,42 @@ in with self; { RPMM = derive2 { name="RPMM"; version="1.25"; sha256="1j48dh434wfhfzka0l21w6f73qlwfm70r9gdddhn504i2d5m4jph"; depends=[cluster]; }; RPPairwiseDesign = derive2 { name="RPPairwiseDesign"; version="1.0"; sha256="0k2vh698rhs5a0b5vhyvrnnwqnagdzs591zx6hn9vbmm8rm4y1dm"; depends=[]; }; RPPanalyzer = derive2 { name="RPPanalyzer"; version="1.4.5"; sha256="0cf4mb7mjp7x3k7083c8n8fjbvrmcgq359wh6pdyj817mgkanqzv"; depends=[Biobase gam ggplot2 gplots Hmisc lattice limma quantreg]; }; + RPS = derive2 { name="RPS"; version="1.0.1"; sha256="16n6wknw2m56kwi6rswgxjwjqblhaz5gyw94f96a7l6navqnvlp4"; depends=[ape geomorph Gmedian igraph MASS matlab]; }; RPostgreSQL = derive2 { name="RPostgreSQL"; version="0.6-2"; sha256="1mdhw5821v2h7hpa53v10wz53k4i90r0vb6a3dia5gq8f9j1h088"; depends=[DBI]; }; RPostgres = derive2 { name="RPostgres"; version="1.1.1"; sha256="1s25lkb69dkc5zk5ikbqa325jw5kfavghsq7s26mrcng4va9dz6i"; depends=[BH bit64 blob DBI hms plogr Rcpp withr]; }; - RPresto = derive2 { name="RPresto"; version="1.3.0"; sha256="01w832ia4c44nhir5rzw33qa8h7afmf04vkfdlg32jaqi1gv5861"; depends=[DBI httr jsonlite openssl Rcpp stringi]; }; - RProtoBuf = derive2 { name="RProtoBuf"; version="0.4.11"; sha256="0q05hdlbgbjydi0x80kgfayfkisalvmb9wy1n6afcw66pbikyb4l"; depends=[Rcpp RCurl]; }; + RPresto = derive2 { name="RPresto"; version="1.3.2"; sha256="14cwdm1r7x97l086hczrkaskx21agi7d8isklnkplchq5gnqs9ir"; depends=[DBI httr jsonlite openssl Rcpp stringi]; }; + RProtoBuf = derive2 { name="RProtoBuf"; version="0.4.12"; sha256="0slyrlywvxg6m0yqarv3d2g7fmwbbhvgcd408hccp3klppl4dfsq"; depends=[Rcpp RCurl]; }; RPtests = derive2 { name="RPtests"; version="0.1.4"; sha256="1r30pslbjq3dip41la81jlin2vhxdmayg902x9ryjy554awfgh7j"; depends=[glmnet randomForest Rcpp]; }; RPublica = derive2 { name="RPublica"; version="0.1.3"; sha256="1w2pn1g44a00ls8kkzj53a739pq6vzp38px2k0yh10rlzimmb21l"; depends=[curl httr jsonlite]; }; RPushbullet = derive2 { name="RPushbullet"; version="0.3.1"; sha256="15cb1zlfnjaf5z4dqx3xrkbkja152ah7jhs21qhvfl20qz4cyh7r"; depends=[curl jsonlite]; }; RQDA = derive2 { name="RQDA"; version="0.3-1"; sha256="1kqax4m4n5h52gi0jaq5cvdh1dgl0bvn420dbws9h5vrabbw1c1w"; depends=[DBI gWidgets gWidgetsRGtk2 igraph RGtk2 RSQLite]; }; - RQEntangle = derive2 { name="RQEntangle"; version="0.1.1"; sha256="1bkx95x1dwa8w6w1qj2aflcsvapa6sipfvqpgngwbp93m0fc10ws"; depends=[iterators itertools]; }; - RQGIS = derive2 { name="RQGIS"; version="1.0.3"; sha256="0wrzjfxwciirl838lakcw7f6qyqyykqd999c9krll5krqzyq7c3c"; depends=[raster RCurl readr reticulate rgdal sf sp stringr XML]; }; - RQuantLib = derive2 { name="RQuantLib"; version="0.4.4"; sha256="1pki0c265nmgph9dbz2pyrq8h7295mxswavfdwsr7m1lpbpzk8s5"; depends=[Rcpp zoo]; }; - RRF = derive2 { name="RRF"; version="1.8"; sha256="09y9f3zx9jcn7rs6an7b0hvjavy2li7rl5nknxzxfx7qnlqajnld"; depends=[]; }; + RQEntangle = derive2 { name="RQEntangle"; version="0.1.2"; sha256="098s9wxcdxcarvrpn2r88kd9lyshiv9z42k6d2mlqkbcwxpz82vn"; depends=[iterators itertools]; }; + RQGIS = derive2 { name="RQGIS"; version="1.0.4"; sha256="0x4jilj5nbikgkcg09913v3dgnfw0aqwwx66xajsfk5lqi6w5vjz"; depends=[raster RCurl readr reticulate rgdal sf sp stringr XML]; }; + RQuantLib = derive2 { name="RQuantLib"; version="0.4.5"; sha256="1q0i6dcyyfkdzpgp6s5izj3wa0280n7a0fv2gvlff9xlrmr3j27x"; depends=[Rcpp zoo]; }; + RRF = derive2 { name="RRF"; version="1.9"; sha256="1j8s07h0bn8imi0g1lkdwismisd6m4v454nldjp5jl11lffyiiaq"; depends=[]; }; RRNA = derive2 { name="RRNA"; version="1.0"; sha256="14rcqh95ygybci8hb8ays8ikb22g3850s9f3sgx3r4f0ky52dcba"; depends=[]; }; - RRPP = derive2 { name="RRPP"; version="0.2.0"; sha256="0wi7b9vwghw96d7v46mq3rpi4iggm1h6948rkbj32zqnxg7sfq3r"; depends=[]; }; + RRPP = derive2 { name="RRPP"; version="0.3.0"; sha256="0f9p6z8lx63d3d34x6lbpiqq26mipa2rbffkk21z7r3qgb7adzil"; depends=[]; }; RRTCS = derive2 { name="RRTCS"; version="0.0.3"; sha256="1riz1gjx3c0pf17xwybizb94nm5zgmfsnv6np3afvw831mb1x3l9"; depends=[sampling samplingVarEst]; }; RRate = derive2 { name="RRate"; version="1.0"; sha256="1q3f2gphdf50aijnk5xqfpxcqfd4jq7byb1gpb0vcnaxgi3a9lwm"; depends=[]; }; RRedshiftSQL = derive2 { name="RRedshiftSQL"; version="0.1.2"; sha256="03jbml8d19hcg6achnyc4hcnl5j10yvsx59j80r46zyn0flsnizq"; depends=[DBI RPostgreSQL]; }; RRphylo = derive2 { name="RRphylo"; version="1.0.0"; sha256="1h167w16lky8aa18fc90rgclx1by3qa9d69n72dxmjzy0d14zjc6"; depends=[ape doParallel foreach geiger lmtest mvMORPH phangorn phytools pvclust R_utils rlist scales smatr]; }; - RRreg = derive2 { name="RRreg"; version="0.6.8"; sha256="1x8jn7wn1vr4wqk1wjmgk7v5lg20giin735gnvf2mm56ji5amq4d"; depends=[doParallel foreach lme4]; }; + RRreg = derive2 { name="RRreg"; version="0.7.0"; sha256="023yfx5mvpzdhns897ibijc7hbr1771c2k6h1yhiy4b7pnaxl0n6"; depends=[doParallel foreach lme4]; }; RSA = derive2 { name="RSA"; version="0.9.12"; sha256="0ii7isrk6c1wb3clbwqzr37v2kypwszi4rjf4caip96bmh7jg3kq"; depends=[aplpack ggplot2 lattice lavaan plyr RColorBrewer tkrplot]; }; RSADBE = derive2 { name="RSADBE"; version="1.0"; sha256="1nzpm88rrzavk0n8iflsx8r3s1xcry15n80zqdw6jijjycz10w1q"; depends=[]; }; RSAGA = derive2 { name="RSAGA"; version="1.2.0"; sha256="1fkwgjicw8yrnkq1r925c22nn8khz6afksba6jpvm1jbwlkmhpzw"; depends=[gstat plyr rgdal shapefiles]; }; - RSAP = derive2 { name="RSAP"; version="0.9"; sha256="1sxirfabhpmfm0yiiazc9h1db70hqwva2is1dql6sjfanpl8qanl"; depends=[reshape yaml]; }; RSAlgaeR = derive2 { name="RSAlgaeR"; version="1.0.0"; sha256="1hp0v2vkj9ixiv541d53kyl0ph3jsdc5w98r81gv5ck5ixrp6bxp"; depends=[cvTools ggplot2 hydroGOF lubridate mblm plyr]; }; RSCABS = derive2 { name="RSCABS"; version="0.9.3"; sha256="08ykkqx9rdx5s6wg2idxz35ddpsz1lir22vrjs92k51zq0jrkhv9"; depends=[gWidgets gWidgetsRGtk2 R2HTML RGtk2]; }; - RSDA = derive2 { name="RSDA"; version="2.0.4"; sha256="1pmqwrwjmw5fsvx3aiy8q4w4w0zh81l1118ny5g3rrb5g6ybnrxs"; depends=[abind dplyr FactoMineR ggplot2 glmnet lazyeval nloptr pander princurve purrr RColorBrewer RJSONIO rlang scales scatterplot3d sqldf stringr tibble tidyr tidyselect XML xtable]; }; - RSEIS = derive2 { name="RSEIS"; version="3.8-1"; sha256="0i4wlym8glsg90fxmzagji45xni2s04jzyrbakkil09n9rpsrl6n"; depends=[RPMG Rwave]; }; - RSGHB = derive2 { name="RSGHB"; version="1.1.2"; sha256="0b2v17p3a3sy8jc4vy0nq65sdkxyf0b8sf5f78yvdcn5knydah6c"; depends=[]; }; + RSDA = derive2 { name="RSDA"; version="2.0.8"; sha256="1lnqncjmqci6lbdm2pph6ankwb9vhwi7mvgjip2qvc2ydgyv6gy9"; depends=[abind dplyr FactoMineR ggplot2 ggpolypath glmnet lazyeval nloptr pander princurve purrr randomcoloR reshape RJSONIO rlang scales scatterplot3d sqldf stringr tibble tidyr tidyselect XML xtable]; }; + RSE = derive2 { name="RSE"; version="1.2"; sha256="0ypz24vag0ipkg04fl2gzqh77kmwryzml6sdsj0l27cczz1yzagw"; depends=[]; }; + RSEIS = derive2 { name="RSEIS"; version="3.8-3"; sha256="1qrv41r17svz7dyzz1sik5zyqck29mzzxrjhj5q6mvrwag3x7fi5"; depends=[RPMG Rwave]; }; + RSGHB = derive2 { name="RSGHB"; version="1.2.0"; sha256="0rzmpx95ac8z625rz3sa9hgzv269q0fdq0crl8hdf1yyzrhrjr3d"; depends=[MCMCpack]; }; RSIP = derive2 { name="RSIP"; version="1.0.0"; sha256="1yddqbnz0av69l53y83m7rnznc42qz66fc3qrispzaajs7p9n8d7"; depends=[ncdf4 raster rasterVis rgdal sp]; }; RSKC = derive2 { name="RSKC"; version="2.4.2"; sha256="0r9gpwhzscb6rbba3dg13p78pvskahgvsd59biag0shyii3xvwpm"; depends=[flexclust]; }; - RSNNS = derive2 { name="RSNNS"; version="0.4-10"; sha256="1khsv1sy8jgsl9s5fypcg77lzj811xzrygwnq6ki9v375sk383gh"; depends=[Rcpp]; }; + RSNNS = derive2 { name="RSNNS"; version="0.4-11"; sha256="0z27rgbqa1lsxvcqyl1456mb0pigvkrx099hdqv7zr4ax4k33547"; depends=[Rcpp]; }; RSNPset = derive2 { name="RSNPset"; version="0.5.3"; sha256="1llx6anwkl4as0hdyvmsrlg9z8mkn9p1qxgs6kqs39w87gyx0j36"; depends=[doRNG fastmatch foreach qvalue Rcpp RcppEigen]; }; RSPS = derive2 { name="RSPS"; version="1.0"; sha256="0ynxhgnxsf27qm8r5d9lyd59zksnc3kvx35hy25vff8j3bg7fqgi"; depends=[gridExtra lattice plyr]; }; RSQLite = derive2 { name="RSQLite"; version="2.1.1"; sha256="1giwk4335sc6yhj3rs8h070g1mwy38kyqyqv6vcfxvskykj7vp6z"; depends=[BH bit64 blob DBI memoise pkgconfig plogr Rcpp]; }; - RSSL = derive2 { name="RSSL"; version="0.6.1"; sha256="03f0i0v0nygkcci42h4bh7jngxz15wsd78cn2zkzbrqadz1c61r5"; depends=[cluster dplyr ggplot2 kernlab MASS Matrix quadprog Rcpp RcppArmadillo reshape2 scales tidyr]; }; + RSSL = derive2 { name="RSSL"; version="0.7"; sha256="0sir01ri4j5igwqm5bj9i99s35gli7yzxxpw1fwi83gdmhh800ap"; depends=[cluster dplyr ggplot2 kernlab MASS Matrix quadprog Rcpp RcppArmadillo reshape2 scales tidyr]; }; RSSOP = derive2 { name="RSSOP"; version="1.1"; sha256="119xrxpaf68qdb2kj2pbaja6im2nbxsgibb1bnlpnc3fcxkmqcsf"; depends=[]; }; RSSampling = derive2 { name="RSSampling"; version="1.0"; sha256="0p10l7qmksx4ysz1jb84f9nbqzig8wxhwy33yk8hq29nb5i4c9ik"; depends=[LearnBayes]; }; RSVGTipsDevice = derive2 { name="RSVGTipsDevice"; version="1.0-7"; sha256="0jdr8l0hp4kzsvlgs8j1m74sr98z4v2lmiqinmc238m406nhppab"; depends=[]; }; @@ -3023,7 +3149,8 @@ in with self; { RSauceLabs = derive2 { name="RSauceLabs"; version="0.1.6"; sha256="1p7hw6vnlg6w5ggmfpc3q3s6n1fikjkjnxzz97jifiy0zwn5dp9i"; depends=[data_table httr jsonlite whisker xml2]; }; RSclient = derive2 { name="RSclient"; version="0.7-3"; sha256="07mbw6mcin9ivsg313ycw2pi901x9vjpmi6q7sms1hml4yq50k6h"; depends=[]; }; RSeed = derive2 { name="RSeed"; version="0.1.60"; sha256="0rvb6w4z5c2wcdgx5w6vv7c8il8d0096pgv3fyvw21ag25z605jc"; depends=[graph RBGL sybil]; }; - RSentiment = derive2 { name="RSentiment"; version="2.2.1"; sha256="0djp530yzj5a6y5nqk98pdvsgy9apqcqvkz0yjqx6856d9wrycm0"; depends=[NLP openNLP plyr stringr]; }; + RSelenium = derive2 { name="RSelenium"; version="1.7.4"; sha256="0djd6bgy2vr85pmcvnq0h2dji20laz852kpn9q8rswxgqb59lqk2"; depends=[binman caTools httr openssl wdman XML]; }; + RSentiment = derive2 { name="RSentiment"; version="2.2.2"; sha256="15d1llzxg1apkwykpb7pic2d5lfj9i9a55hab067wrz2yq5jsyfa"; depends=[NLP openNLP plyr stringr]; }; RSiena = derive2 { name="RSiena"; version="1.2-12"; sha256="1bc0vdqqzkf3q3b6rzqiwd29lcq8vbvlj2qkxbx6v8wjphycz6rw"; depends=[lattice MASS Matrix]; }; RSiteCatalyst = derive2 { name="RSiteCatalyst"; version="1.4.15"; sha256="13mrqf458m43g435g4pbg49pid63f4ap1r8jzl84mvj1b36hy4q6"; depends=[base64enc digest httr jsonlite plyr stringr]; }; RSmartlyIO = derive2 { name="RSmartlyIO"; version="0.1.2"; sha256="0phkk79ng4r54w3d4ajl505gs8svlzdf1g6q50lhraq2cbllbvgx"; depends=[RCurl]; }; @@ -3034,6 +3161,7 @@ in with self; { RStoolbox = derive2 { name="RStoolbox"; version="0.2.3"; sha256="06b54g186bwgl5g8wkbj6q05bdy6sqvx433xwwvj7az1qxpa5kwr"; depends=[caret codetools doParallel foreach geosphere ggplot2 raster Rcpp RcppArmadillo reshape2 rgdal rgeos sp XML]; }; RStorm = derive2 { name="RStorm"; version="0.902"; sha256="1apk358jwzg5hkrcq8h39rax1prgz9bhkz9z51glmci88qrw1frv"; depends=[plyr]; }; RStripe = derive2 { name="RStripe"; version="0.1"; sha256="0vp7zsd5xm8rf7196fivb76kkmxfx3gawxlyjhn9xqv92vawivra"; depends=[httr jsonlite RCurl]; }; + RSuite = derive2 { name="RSuite"; version="0.33-246"; sha256="0npaafcz4afpcyvwp7bjyc7vlsypid03rspwb00sf0z3v8k6k1r9"; depends=[devtools git2r httr jsonlite logging processx roxygen2]; }; RSurveillance = derive2 { name="RSurveillance"; version="0.2.0"; sha256="1lvl9msnd8l9svd9nyivx1cqfmcxirxvfjfj0xv7yjklza8af7w3"; depends=[epiR epitools mc2d]; }; RSurvey = derive2 { name="RSurvey"; version="0.9.3"; sha256="0yk969jdvpgv01zbmk4zyxcmrbdizh37bddj1k128ndyf191z37x"; depends=[colorspace inlmisc MBA raster rgdal rgeos sp]; }; RSvgDevice = derive2 { name="RSvgDevice"; version="0.6.4.4"; sha256="0vplac5jzg6bmvbpmj4nhiiimsr9jlbk8mzyifnnndk9iyf2lcmz"; depends=[]; }; @@ -3044,7 +3172,8 @@ in with self; { RTaxometrics = derive2 { name="RTaxometrics"; version="2.3"; sha256="02446y86g21i37ycavg0xc1ggxk0k93d38n71fis9fav06lywxx3"; depends=[]; }; RTextTools = derive2 { name="RTextTools"; version="1.4.2"; sha256="1j3zfywq8xgax51mbizxz704i3ys4vzp8hyi5kkjzq6g2lw7ywq2"; depends=[caTools e1071 glmnet ipred maxent nnet randomForest SparseM tau tm tree]; }; RTextureMetrics = derive2 { name="RTextureMetrics"; version="1.1"; sha256="0d0mvpmcpd62cvqlajrqp32lnvpflyf9bqvdzly2v8v1kb8274fc"; depends=[]; }; - RTransProb = derive2 { name="RTransProb"; version="0.3.0"; sha256="010nsw97b0yi5l6fkwx04aacv47fww9lp7pgjdm8nb7gg9yif2bx"; depends=[caret chron e1071 expm MASS Matrix matrixStats neuralnet nnet pracma Rcpp RcppArmadillo zoo]; }; + RTransProb = derive2 { name="RTransProb"; version="0.3.3"; sha256="1fl8ag7aizj7k7j5ypx632qa98jp3wp8z3mp5z490n1277ajzrkb"; depends=[caret chron e1071 expm MASS Matrix matrixStats neuralnet nnet pracma Rcpp RcppArmadillo zoo]; }; + RTransferEntropy = derive2 { name="RTransferEntropy"; version="0.2.7"; sha256="16mrhbjg0s09vqxwllsm1q7wzx0kma7gfzyh0szhcf62z5y0a2x1"; depends=[future future_apply Rcpp]; }; RTriangle = derive2 { name="RTriangle"; version="1.6-0.10"; sha256="07ya95gmv53i2argqwgad6wd4sslql2wl1rkvsmgsvmhsb4wp9hd"; depends=[]; }; RUnit = derive2 { name="RUnit"; version="0.4.32"; sha256="1wc1gwb7yw7phf8b0gkig6c23klya3ax11c6i4s0f049k42r78r3"; depends=[]; }; RVAideMemoire = derive2 { name="RVAideMemoire"; version="0.9-69-3"; sha256="18m4f1h0jnc8k03vpmyr8gcr4l6k0anjy660qrz8sqcaasp3ikj1"; depends=[ade4 boot car cramer dunn_test FactoMineR lme4 MASS mixOmics multcompView nnet pls pspearman vegan]; }; @@ -3052,12 +3181,13 @@ in with self; { RVideoPoker = derive2 { name="RVideoPoker"; version="0.3"; sha256="06s4dlw0pw8rcq5b31xxqdpdk396rf27mai2vpvmn585vbm1ib7a"; depends=[pixmap rpanel tkrplot]; }; RViennaCL = derive2 { name="RViennaCL"; version="1.7.1.7"; sha256="08mhn6732sb284y4garx0nvhad4r42pk39p3r82fad4c1c3rxkhg"; depends=[]; }; RVowpalWabbit = derive2 { name="RVowpalWabbit"; version="0.0.12"; sha256="1x3pq6cnkjashf49imrw76xkw9nzqgn9132l03l9v4vacgh0s47m"; depends=[Rcpp]; }; - RVsharing = derive2 { name="RVsharing"; version="1.7.0"; sha256="1z1jwj6dzyib8sxpz4p4wpiizfhxz6sp62nnig779rhnv7wfkqqf"; depends=[kinship2]; }; RVtests = derive2 { name="RVtests"; version="1.2"; sha256="0k7w6ml981zvr5bix197qw4kaf7rz5jqnwqlxf7aryxbm39gk16c"; depends=[glmnet pls spls]; }; RWBP = derive2 { name="RWBP"; version="1.0"; sha256="104vr2cdk185hh4zn3vmqvb14p1q8ifk11wdgvk7fli1m1zxxwdd"; depends=[igraph lsa RANN SnowballC]; }; + RWDataPlyr = derive2 { name="RWDataPlyr"; version="0.6.2"; sha256="1928hyfmy21s586nafd5qajbypqslc96zfmxbi42rcmvzim16v3k"; depends=[data_table dplyr feather Rcpp tibble tidyr xts zoo]; }; RWebLogo = derive2 { name="RWebLogo"; version="1.0.3"; sha256="1n65mlnr163ywjnyyngnigbj0wpgkr38c3nx8hw5r8mwjnf3d617"; depends=[findpython]; }; - RWeka = derive2 { name="RWeka"; version="0.4-38"; sha256="1c0jvz2d04h31g4mp8sg9vrp5138n97gavji18yiij7pd11g5qda"; depends=[rJava RWekajars]; }; - RWekajars = derive2 { name="RWekajars"; version="3.9.2-1"; sha256="006n7m3qxnzvfhkzcr0nbwqdlhygzdhyp8x3534dx6075bm00v0f"; depends=[rJava]; }; + RWeightedKmeans = derive2 { name="RWeightedKmeans"; version="1.1.0"; sha256="07qnwcg4b4dls6jgk1jz23s4y11ml86hs9ghmd3hdh5rcmri879s"; depends=[clusterCrit fpc]; }; + RWeka = derive2 { name="RWeka"; version="0.4-39"; sha256="00sg0k7pcm654agm7dd6sq6yhwk65q6pfp7m92d825m2wpzlzn0d"; depends=[rJava RWekajars]; }; + RWekajars = derive2 { name="RWekajars"; version="3.9.3-1"; sha256="16syvpc9qfn19sjdp3jikmzccj198ybr8dar7fajfaqsfms2kgfw"; depends=[rJava]; }; RWiener = derive2 { name="RWiener"; version="1.3-1"; sha256="0w12xvc18l002m8q6ad3laa667xzqjbcfqf0vvcmicgw2j3bbq6h"; depends=[]; }; RWildbook = derive2 { name="RWildbook"; version="0.9.3"; sha256="1pznzmv8n33hhj61h07fha1gzafcx705n8323cnz3mx6ziijfh28"; depends=[data_table jsonlite marked]; }; RXKCD = derive2 { name="RXKCD"; version="1.8-2"; sha256="081zrx293z4009p6fj2za0mkf04nikxmg3i45l667qvy7nmajqlc"; depends=[jpeg png RJSONIO]; }; @@ -3069,19 +3199,20 @@ in with self; { RZigZag = derive2 { name="RZigZag"; version="0.1.6"; sha256="1sb1lmm5vnzkbzqxbmipkm2zb01zg2x15jgyrsplardyy8kpqxn7"; depends=[Rcpp RcppEigen]; }; RZooRoH = derive2 { name="RZooRoH"; version="0.1.1"; sha256="10l7i4fdjvq921ngbcd5kmbaq9zvl44p5clyd6zyq8d7598ffz77"; depends=[data_table doParallel foreach iterators RColorBrewer]; }; RaPKod = derive2 { name="RaPKod"; version="0.9"; sha256="1qxzi2lf431zd44bcd98ybhzydy1cz12g864l6r668jk91aqy1qg"; depends=[kernlab MASS proxy Rcpp RcppArmadillo]; }; + RaceID = derive2 { name="RaceID"; version="0.1.1"; sha256="0aw6jkjval1wm210i32znwjw1vsff8b95bam9fnss5rg1adha2j1"; depends=[cluster coop FateID fpc ica igraph irlba locfit MASS Matrix pheatmap quadprog randomForest RColorBrewer Rtsne vegan]; }; RadOnc = derive2 { name="RadOnc"; version="1.1.4"; sha256="1ri6ybzhfdgbrbfcy12mmvv2ipg61az7vwp1dbjyzs8mgsc1cxb5"; depends=[geometry oro_dicom ptinpoly rgl]; }; RadTran = derive2 { name="RadTran"; version="1.0"; sha256="1sb8d4y3b37akbxhdavxrkp34zn3ip061b7gzy0ga57pyn76cvpn"; depends=[ReacTran rootSolve]; }; RadioSonde = derive2 { name="RadioSonde"; version="1.4"; sha256="1v9jdpynmb01m3syhas1s08xxlvjawhlvjkyhils2iggi4xw4hiq"; depends=[]; }; Radviz = derive2 { name="Radviz"; version="0.7.0"; sha256="0x1b3s3i3f775m7ragvzpdswljry8adbkjb6aq35aqasnkvvnysq"; depends=[gridBase hexbin KernSmooth MASS]; }; - RagGrid = derive2 { name="RagGrid"; version="0.1.1"; sha256="0jx3ch42ilcf6baw0pv42cs9lbhharma78bd8vps403p69ray4z8"; depends=[crosstalk htmltools htmlwidgets knitr]; }; + RagGrid = derive2 { name="RagGrid"; version="0.2.0"; sha256="0crnpd75lyhd0awzqzqy7bzw4ydgxpyhy1ybb1ff4qsnisbjdbba"; depends=[crosstalk htmltools htmlwidgets knitr]; }; Ramble = derive2 { name="Ramble"; version="0.1.1"; sha256="0225za85i5nvf8l89i5bz7nxsxykd3v9fp1wgihmncca6n8vhgpl"; depends=[]; }; - Rambo = derive2 { name="Rambo"; version="1.1"; sha256="1yc04xsfkc54y19g5iwambgnlc49ixjjvfrafsgis2zh5w6rjwv8"; depends=[sna]; }; + Rambo = derive2 { name="Rambo"; version="1.1.1"; sha256="036rvjj6gcnf2gg5xl55n5p8j1pzifb9wmlpwnymz1csxgkl477i"; depends=[sna]; }; RandMeta = derive2 { name="RandMeta"; version="0.1.0"; sha256="0bh3rkdfmwqym47q8f90pw3mmx7q8jyp4rz16ggqrmk1b5bdyqjb"; depends=[]; }; RandPro = derive2 { name="RandPro"; version="0.2.0"; sha256="1bhbg6lvgr9h6rq3g3ljm2422ngjb18maj80l7f659ql88c8h6mj"; depends=[caret e1071]; }; - RandVar = derive2 { name="RandVar"; version="1.0.1"; sha256="0vj0p46xmj4129m6r5zg85fnvb5kx1ardwwk55nqypkxd0v58a4j"; depends=[distr distrEx startupmsg]; }; + RandVar = derive2 { name="RandVar"; version="1.1.0"; sha256="1kb7b12laf2vvc2m3xfh8wdxb0vcapns52qfbkpn8hg6ba75s1px"; depends=[distr distrEx startupmsg]; }; RandomFields = derive2 { name="RandomFields"; version="3.1.50"; sha256="0j7852wvclglp820y2x5r19gsr6ciygbbpl5qvwj1khnlz1hfsid"; depends=[RandomFieldsUtils sp]; }; RandomFieldsUtils = derive2 { name="RandomFieldsUtils"; version="0.3.25"; sha256="0nxk7jhr61l9h76hf96f7ypakl4wip144c0gzr6rqsja6m75rjz3"; depends=[]; }; - RanglaPunjab = derive2 { name="RanglaPunjab"; version="2.3.1"; sha256="0hmami515jv916lxdwv31w3w2bjn954qwibvgw1qlqn8d5swndiw"; depends=[jpeg shiny tidyverse]; }; + RanglaPunjab = derive2 { name="RanglaPunjab"; version="2.3.4"; sha256="01j3gww9kil02d44jwlkz6j7lwn2him830bnshkly0s7mgh22pgr"; depends=[jpeg shiny tidyverse]; }; RankAggreg = derive2 { name="RankAggreg"; version="0.6.5"; sha256="031mff1zydxqygx8bn3g0qpwq08kaq5bpmzy6z2y0fa03hgsxz5c"; depends=[gtools]; }; RankResponse = derive2 { name="RankResponse"; version="3.1.1"; sha256="04s588zbxcjgvpmbb2x46bbf5l15xm7pwiaxjgc1kn1pn6g1080c"; depends=[]; }; Rankcluster = derive2 { name="Rankcluster"; version="0.94"; sha256="0ak6cpm073ym4h9l3j7pq0ks9h4is1hzxfjn52j23nc5ifq3fjpq"; depends=[Rcpp RcppEigen]; }; @@ -3096,6 +3227,7 @@ in with self; { Rbitcoin = derive2 { name="Rbitcoin"; version="0.9.2"; sha256="0ndq4kg1jq6h0jxwhpdp8sw1n5shg53lwa1x0bi7rifmy0gnh66f"; depends=[data_table digest RCurl RJSONIO]; }; Rblpapi = derive2 { name="Rblpapi"; version="0.3.8"; sha256="1d1b3rdp9zqz9x6xb7zmbs4yrz339qjvlhif7s8ifcz1zdpzzhal"; depends=[BH Rcpp]; }; Rborist = derive2 { name="Rborist"; version="0.1-8"; sha256="0zr8vfbv11ascng7n2zv5xbqv7h0r0bycwn8bqlq8q10y2lyxg70"; depends=[Rcpp RcppArmadillo]; }; + Rcan = derive2 { name="Rcan"; version="1.3.61"; sha256="1fbs72f5q5c9sn0m14izna2dpppjy4bgm4sfbhpybbkfkj567mqq"; depends=[data_table ggplot2 scales]; }; Rcapture = derive2 { name="Rcapture"; version="1.4-2"; sha256="1nsxy5vpfv7fj03i6l5pgzjm0cldwqxxycnvqkfkshbryjcyl0ps"; depends=[]; }; RcellData = derive2 { name="RcellData"; version="1.3-2"; sha256="1zzkgpj2pc42xzz5pspyj981a04gjpna4br3lxna255366ijgz4l"; depends=[]; }; Rcereal = derive2 { name="Rcereal"; version="1.2.1"; sha256="0nl4p0wqpni16z62610sqcxsz1x6kannl2s1zakpmjkk80pyxlk6"; depends=[]; }; @@ -3104,8 +3236,8 @@ in with self; { RchivalTag = derive2 { name="RchivalTag"; version="0.0.7"; sha256="0i25rj3f54km2gdr8izgvqdbdbcq4nikywn5narm7sg79fv43pd4"; depends=[mapdata maps maptools ncdf4 oceanmap PBSmapping plyr raster rgeos sp]; }; Rchoice = derive2 { name="Rchoice"; version="0.3-1"; sha256="1mx50270vbhvng4vdcc6w94f3l890vjl41y07bqkv40n93fxvffw"; depends=[Formula maxLik msm plm plotrix]; }; Rclean = derive2 { name="Rclean"; version="1.0.0"; sha256="065jq957xsk9p1nnzf8ilp9swjfxhydgc7xg57lfcg9hz99ckwfr"; depends=[formatR igraph jsonlite]; }; - Rcmdr = derive2 { name="Rcmdr"; version="2.4-4"; sha256="0n15wkhn8hfhcpz0n2ngxkfaysjsizksxxr1fhpfjmlpy4wxxnx0"; depends=[abind car effects RcmdrMisc relimp tcltk2]; }; - RcmdrMisc = derive2 { name="RcmdrMisc"; version="1.0-10"; sha256="1fxcm0iwxdqh9qv2g6w7sqbg23zgl5z5ib2x69j5n10fglx89m8f"; depends=[abind car colorspace e1071 foreign haven Hmisc MASS nortest readstata13 readxl sandwich]; }; + Rcmdr = derive2 { name="Rcmdr"; version="2.5-1"; sha256="0jw4bvv6wjznra6n9ad3hqvgfi5m9i8axyhms1kgqrcd5n4zcfcf"; depends=[abind car effects RcmdrMisc relimp tcltk2]; }; + RcmdrMisc = derive2 { name="RcmdrMisc"; version="2.5-1"; sha256="10cnvk541cx8lzapra2104dn1kh780phzz29dwvfwrx4k9vfbh7i"; depends=[abind car colorspace e1071 foreign haven Hmisc MASS nortest readstata13 readxl sandwich]; }; RcmdrPlugin_BiclustGUI = derive2 { name="RcmdrPlugin.BiclustGUI"; version="1.1.1"; sha256="1sdc8ibggz8wpn77g7hddyl7lg86dbyw8qax63p6cqx1pfhb4rra"; depends=[BcDiag BiBitR BicARE biclust fabia gplots iBBiG Rcmdr rqubic s4vd superbiclust viridis]; }; RcmdrPlugin_DoE = derive2 { name="RcmdrPlugin.DoE"; version="0.12-3"; sha256="1iifn71kjjgcp7dfz2pjq57mgbv4rrznrl3b3k9gdc2dva1z9zvc"; depends=[DoE_base DoE_wrapper FrF2 Rcmdr RcmdrMisc relimp]; }; RcmdrPlugin_EACSPIR = derive2 { name="RcmdrPlugin.EACSPIR"; version="0.2-2"; sha256="10r6rb0fwlilcnqxa38zh7yxc54x1a0by5x4f6gzdn9zs7aj5l1r"; depends=[abind ez nortest R2HTML Rcmdr RcmdrMisc reshape]; }; @@ -3121,25 +3253,22 @@ in with self; { RcmdrPlugin_KMggplot2 = derive2 { name="RcmdrPlugin.KMggplot2"; version="0.2-5"; sha256="069kpvhflk0rwwll0vyxfdrln1lzr1zhzfzm39si63ji6v7l6msb"; depends=[ggplot2 ggthemes plyr Rcmdr RColorBrewer scales survival tcltk2]; }; RcmdrPlugin_MA = derive2 { name="RcmdrPlugin.MA"; version="0.0-2"; sha256="1zivlc0r2mkxpx23ba76njmb2wnnjijysvza4f24dg4l47d0sr2p"; depends=[MAd metafor Rcmdr]; }; RcmdrPlugin_MPAStats = derive2 { name="RcmdrPlugin.MPAStats"; version="1.2.2"; sha256="1ynj42p12ncgrbghd8w7mkyys2cq9r9dpbir57rj3k5l46yzj7d5"; depends=[ordinal Rcmdr]; }; - RcmdrPlugin_NMBU = derive2 { name="RcmdrPlugin.NMBU"; version="1.8.8"; sha256="1s7947zvrhjrc7vchvaajp2q7xdqfg5vsmg6r7ym416cqq39i5kd"; depends=[MASS mixlm phia pls Rcmdr xtable]; }; + RcmdrPlugin_NMBU = derive2 { name="RcmdrPlugin.NMBU"; version="1.8.9"; sha256="1lwxmhla66nxrb6ph81vxa60pzga80z0vniq725y37w5zlqzgmcq"; depends=[MASS mixlm phia pls Rcmdr xtable]; }; RcmdrPlugin_OptimClassifier = derive2 { name="RcmdrPlugin.OptimClassifier"; version="0.1.2"; sha256="0gisjw1iniihy2c2mr9f9pxfnfr2dc0s482wb9yfn88vknx8d0rn"; depends=[OptimClassifier Rcmdr RcmdrMisc]; }; RcmdrPlugin_PcaRobust = derive2 { name="RcmdrPlugin.PcaRobust"; version="1.1.4"; sha256="17rq3sv8payazjjn5j37cgd6df5b62d2y8al3grw6hw5nfba7lvn"; depends=[Rcmdr robustbase rrcov tkrplot]; }; RcmdrPlugin_RMTCJags = derive2 { name="RcmdrPlugin.RMTCJags"; version="1.0-2"; sha256="04g5a1dpch54k5ckfkrg4vsap1nc3af1i0i559qigv3hy8n7pm80"; depends=[coda igraph Rcmdr rjags rmeta runjags]; }; RcmdrPlugin_ROC = derive2 { name="RcmdrPlugin.ROC"; version="1.0-18"; sha256="0alwsvwry4k65ps00zvdqky9rh663bbfaw15lhwydbgcpqdkn2n6"; depends=[pROC Rcmdr ResourceSelection ROCR]; }; - RcmdrPlugin_RiskDemo = derive2 { name="RcmdrPlugin.RiskDemo"; version="1.9"; sha256="014x9w9qhi0fl8y35k918m25ml1sr1pndcrdih7v3dibzy18qbbn"; depends=[demography Rcmdr rgl]; }; - RcmdrPlugin_SCDA = derive2 { name="RcmdrPlugin.SCDA"; version="1.1"; sha256="0pd765ndh8d7hy6spds3r4pi09i0ak4b1ygwczp6yr2zcs1aikbc"; depends=[Rcmdr SCMA SCRT SCVA]; }; + RcmdrPlugin_RiskDemo = derive2 { name="RcmdrPlugin.RiskDemo"; version="2.0"; sha256="1mclhcb138f13p7ghiggdm8zjrgxqrn3zn8biygfy6yvhw2j396p"; depends=[demography ftsa Rcmdr rgl]; }; + RcmdrPlugin_SCDA = derive2 { name="RcmdrPlugin.SCDA"; version="1.1.1"; sha256="0lky4vmia97vcpwsvzprgmkwkdwjwnmi8bdjx3r3w6rrc2lqb6a8"; depends=[Rcmdr SCMA SCRT SCVA]; }; RcmdrPlugin_SLC = derive2 { name="RcmdrPlugin.SLC"; version="0.2"; sha256="1nwpzmgfla1y05dxf81w0wmvvmvcq5jn5k8phlq30920ia7ybs8g"; depends=[Rcmdr SLC]; }; - RcmdrPlugin_SM = derive2 { name="RcmdrPlugin.SM"; version="0.3.1"; sha256="10sjh2x02kb6yaxbvd9ihc6777j4iv6wi6k42gyl3k7i2c39fyn3"; depends=[car colorspace Rcmdr RColorBrewer vcd]; }; RcmdrPlugin_TeachingDemos = derive2 { name="RcmdrPlugin.TeachingDemos"; version="1.1-0"; sha256="0fgl1v1g74ca14pf3mmbv26j09v7jy6ddyap5qavgiy9s8qrwrh8"; depends=[Rcmdr rgl TeachingDemos tkrplot]; }; - RcmdrPlugin_UCA = derive2 { name="RcmdrPlugin.UCA"; version="4.2-4"; sha256="17ivr48y0wh89nphjzfmgdgpsfsxw4n6bfwjln0crvqhm4xh6qmh"; depends=[randtests Rcmdr TeachingDemos tseries]; }; + RcmdrPlugin_UCA = derive2 { name="RcmdrPlugin.UCA"; version="4.2-5"; sha256="1skqqkii44ajdwqj6svk19n4z2vi9lp36j7bdhasd9ay3k8f9wgh"; depends=[randtests Rcmdr TeachingDemos tseries]; }; RcmdrPlugin_aRnova = derive2 { name="RcmdrPlugin.aRnova"; version="0.0.5"; sha256="0ys3565pcbr554yb1gi2h149vhvwc0gdfmh7mz8zzd4367hqn553"; depends=[Rcmdr]; }; RcmdrPlugin_coin = derive2 { name="RcmdrPlugin.coin"; version="1.0-22"; sha256="0qmdjnjmgq52wgl4llg69q9x7hvwd73mz3swv0sv88v8zqg7xj93"; depends=[coin multcomp Rcmdr survival]; }; RcmdrPlugin_depthTools = derive2 { name="RcmdrPlugin.depthTools"; version="1.3"; sha256="09mjn5jn4rdj1lh515vr3xlnk615flg13kcwbpk0an2si4xkgm9h"; depends=[depthTools Rcmdr]; }; - RcmdrPlugin_doex = derive2 { name="RcmdrPlugin.doex"; version="0.2.0"; sha256="0l3c8vwifyl8a7qkfaqxm7cws2cg1g501qa93w5svcgp03yf98mj"; depends=[multcomp Rcmdr]; }; - RcmdrPlugin_epack = derive2 { name="RcmdrPlugin.epack"; version="1.2.5"; sha256="1577qhac4rldifax5x3l39cddan6dhq2dv4iv2n64nadgrl0259w"; depends=[abind forecast MASS Rcmdr TeachingDemos tseries xts]; }; RcmdrPlugin_lfstat = derive2 { name="RcmdrPlugin.lfstat"; version="0.8.3"; sha256="1rcr43dqyb9zw9av3awkz0640vmvhxrafal5brnhqnpg4hfbpma3"; depends=[lfstat Rcmdr]; }; RcmdrPlugin_mosaic = derive2 { name="RcmdrPlugin.mosaic"; version="1.0-7"; sha256="0k6xaz2dfm9ch9lxqsh19jm8d4bbyjj2ffmjjxl57kanb3pvrrwv"; depends=[ENmisc Hmisc Rcmdr vcd]; }; - RcmdrPlugin_orloca = derive2 { name="RcmdrPlugin.orloca"; version="4.5"; sha256="1rjlc5v9ksndmzcdw5lkqvzxpsanvglm20ppbw49nna8rsylkj08"; depends=[orloca orloca_es Rcmdr]; }; + RcmdrPlugin_orloca = derive2 { name="RcmdrPlugin.orloca"; version="4.6"; sha256="1n48yckr76j3wrspwyji0jvfn65cmpxplczx403x61sd0b4836xi"; depends=[orloca orloca_es Rcmdr]; }; RcmdrPlugin_plotByGroup = derive2 { name="RcmdrPlugin.plotByGroup"; version="0.1-0"; sha256="10wc7lnihsrldsynq2s0syr1aqmvfnj9rhgwh1nkk7jlrwcgj0z6"; depends=[lattice Rcmdr]; }; RcmdrPlugin_pointG = derive2 { name="RcmdrPlugin.pointG"; version="0.6.6"; sha256="0sc3akbpdys353va05b40g3rq8qihw0pmhvv0kckkhsgrbr8mc07"; depends=[Rcmdr RColorBrewer]; }; RcmdrPlugin_qual = derive2 { name="RcmdrPlugin.qual"; version="2.2.6"; sha256="00wznh0k909cd9vwdj1ag3224xkqnwjsad1bfkgxbszsx0w6xvy9"; depends=[Rcmdr]; }; @@ -3151,21 +3280,22 @@ in with self; { RcmdrPlugin_temis = derive2 { name="RcmdrPlugin.temis"; version="0.7.10"; sha256="02rs5xdj6g57frndc87fly0ans16584j4d0rfpy1h72655cz66ab"; depends=[ca lattice latticeExtra NLP R2HTML Rcmdr RColorBrewer slam stringi tcltk2 tm zoo]; }; Rcolombos = derive2 { name="Rcolombos"; version="2.0.2"; sha256="0l92icjqqm5fxafqwd09lnmv5x6kvjdg8cphlm37q86nslwr5rkk"; depends=[httr]; }; Rcplex = derive2 { name="Rcplex"; version="0.3-3"; sha256="0abmrqphrpdlc831hwbwx15z4vdgn385kxhnqlbb9v0sjmfyszsl"; depends=[slam]; }; - Rcpp = derive2 { name="Rcpp"; version="0.12.17"; sha256="08xg8h3w25sdb3xr18g9pa0x8cirkdgljqapxmw56ss1j9fc89s2"; depends=[]; }; + Rcpp = derive2 { name="Rcpp"; version="0.12.19"; sha256="10mmiaawv9iwglc6z4y51mdpsfb1sivqmwr6xnfqkllcnpabdbk3"; depends=[]; }; Rcpp11 = derive2 { name="Rcpp11"; version="3.1.2.0"; sha256="1x6n1z7kizagr5ymvbwqb7nyn3lca4d4m0ks33zhcn9gay6g0fac"; depends=[]; }; - RcppAPT = derive2 { name="RcppAPT"; version="0.0.4"; sha256="0xbaamv3bg08ymbmiq6kwh86p17y6qzgydq02syig2a3ykp0042c"; depends=[Rcpp]; }; - RcppAlgos = derive2 { name="RcppAlgos"; version="2.0.3"; sha256="0m1hj249hyn6vwhqn2jismqkd07glk7nxqxwpq81rph9wp50ji0a"; depends=[Rcpp]; }; + RcppAPT = derive2 { name="RcppAPT"; version="0.0.5"; sha256="0188sabgfmgh83yr3hmqpg5cmhllfkxzbxxchqr2r2fmj6x0ib1a"; depends=[Rcpp]; }; + RcppAlgos = derive2 { name="RcppAlgos"; version="2.2.0"; sha256="0sq482qzg3xa52ny2xfvj4vrrfnk0qng4fqmw5jfaqr806r7sbrp"; depends=[gmp Rcpp]; }; RcppAnnoy = derive2 { name="RcppAnnoy"; version="0.0.10"; sha256="08s86ak26zybawry6l6l30k1lakc71k2j58539h70dnrmsd15jna"; depends=[Rcpp]; }; - RcppArmadillo = derive2 { name="RcppArmadillo"; version="0.8.600.0.0"; sha256="15wqk6lnaxf6az9ccvmzpx6pi2cs19ng8j3qvk5zw1niljpp8n3k"; depends=[Rcpp]; }; + RcppArmadillo = derive2 { name="RcppArmadillo"; version="0.9.100.5.0"; sha256="1iyjqhfjip1nxrkllzh7r1m01jjnx7cahqkf3s557w34p987f2l1"; depends=[Rcpp]; }; RcppBDT = derive2 { name="RcppBDT"; version="0.2.3"; sha256="0gnj4gz754l80df7w3d5qn7a57z9kq494n00wp6f7vr8aqgq8wi1"; depends=[BH Rcpp]; }; RcppBlaze = derive2 { name="RcppBlaze"; version="0.2.2"; sha256="0hi7gh7xlmdcyzxsis8wl841d6czbcgb8qdg8y822am1mvc0wmb7"; depends=[BH Matrix Rcpp]; }; - RcppCCTZ = derive2 { name="RcppCCTZ"; version="0.2.3"; sha256="0cb04filbr0mymcg891lc0dw2b3fnjmhn8z50xcilb3v72ccrvqg"; depends=[Rcpp]; }; - RcppCNPy = derive2 { name="RcppCNPy"; version="0.2.9"; sha256="0c6vdrf16f8fyaczzwapzn513wrdklsc8izmzfmfbc58s5500gvk"; depends=[Rcpp]; }; - RcppCWB = derive2 { name="RcppCWB"; version="0.2.4"; sha256="00zgxdakjza8i0wi6zj7lri8ma0pxnsgccm9q16i2nqqndvk4q34"; depends=[Rcpp]; }; - RcppClassic = derive2 { name="RcppClassic"; version="0.9.10"; sha256="1q0vld06dp00d2qdwnnrga4n9abiymqw74zpci2kx813n5z1l0yc"; depends=[Rcpp]; }; + RcppCCTZ = derive2 { name="RcppCCTZ"; version="0.2.5"; sha256="03r7qfhxmn20925yjvqs5cbm255yk4kbrvw16dl2r98argblcmmk"; depends=[Rcpp]; }; + RcppCNPy = derive2 { name="RcppCNPy"; version="0.2.10"; sha256="175bn75akwgz3vcp0n59kiqqz7q9cwkvih241nj8v810cp4gpmkp"; depends=[Rcpp]; }; + RcppCWB = derive2 { name="RcppCWB"; version="0.2.6"; sha256="0vfv9v213v7z3y8rg0kn7w6vwvwxg8gmm2s8h8aa44xfi9q1wia2"; depends=[Rcpp]; }; + RcppClassic = derive2 { name="RcppClassic"; version="0.9.11"; sha256="0aap391fh84342s64v5k43a1vy3cwzg01q3g6ry7mmd2d5h1vv1g"; depends=[Rcpp]; }; RcppClassicExamples = derive2 { name="RcppClassicExamples"; version="0.1.2"; sha256="0dr2104miy7psr73nicfs84652ai0d5liw6wxcwyrx7fmys3p638"; depends=[Rcpp RcppClassic]; }; RcppDE = derive2 { name="RcppDE"; version="0.1.6"; sha256="1i9jj595nqpb16y22z2b8fcf0gq1fg0pbiisbd837p1cyw4nff69"; depends=[Rcpp RcppArmadillo]; }; RcppDL = derive2 { name="RcppDL"; version="0.0.5"; sha256="1gii00bna6k9byaax7gsx42dv1jjnkrp4clbmdq59ybq3vkvw8z2"; depends=[Rcpp]; }; + RcppDist = derive2 { name="RcppDist"; version="0.1.1"; sha256="02g57xwfipdcljv06krhm02dbqn9kfyj2km6rdg0a7vq9prwdz1x"; depends=[Rcpp RcppArmadillo]; }; RcppEigen = derive2 { name="RcppEigen"; version="0.3.3.4.0"; sha256="1m6ssq6lvi36ggf26y4hhq996583pxxdb978jnn1x6r9gdb0q0hi"; depends=[Matrix Rcpp]; }; RcppEigenAD = derive2 { name="RcppEigenAD"; version="1.0.0"; sha256="18zm9hsfqwiicxsdm87ix3qc261ljxxn2s736p6aayx82b6vwkz6"; depends=[BH functional memoise Rcpp RcppEigen Rdpack readr]; }; RcppExamples = derive2 { name="RcppExamples"; version="0.1.8"; sha256="15iw2vx6ygb03siq743418whhqvfrxk2i4nqn7p9yg1m3jwafxna"; depends=[Rcpp]; }; @@ -3178,38 +3308,39 @@ in with self; { RcppMLPACK = derive2 { name="RcppMLPACK"; version="1.0.10-6"; sha256="0vjx6azp3sny6nv5k1cs6vk61hmbllqw8mgvi7zn15p7ilmhsyyi"; depends=[BH Rcpp RcppArmadillo]; }; RcppMeCab = derive2 { name="RcppMeCab"; version="0.0.1.2"; sha256="0varavfbrqzma176rw0dr9v5chh7pxh5y9g0rs3v7hqnlghp22y2"; depends=[BH Rcpp RcppParallel]; }; RcppMsgPack = derive2 { name="RcppMsgPack"; version="0.2.2"; sha256="0118ajmgl8gdc1cd47x0pnp4qglszc3j3izw98m6y2gkm3rnkzad"; depends=[BH Rcpp]; }; + RcppNLoptExample = derive2 { name="RcppNLoptExample"; version="0.0.1"; sha256="1fml6hpa12q0lgg5fg6fi9lz6mckwh345pbh95mld2qagzvmg01n"; depends=[nloptr Rcpp]; }; RcppNumerical = derive2 { name="RcppNumerical"; version="0.3-2"; sha256="0j0hvwsbidahk2zx3zk7fhc6m9cca27iq3ivx7vdvggz8iqzszrz"; depends=[Rcpp RcppEigen]; }; - RcppParallel = derive2 { name="RcppParallel"; version="4.4.0"; sha256="1gjqmkzsi1fi0vss1nvq6i77j3aixdxd047mw9vf4l60z2ypr3h1"; depends=[BH]; }; + RcppParallel = derive2 { name="RcppParallel"; version="4.4.1"; sha256="1y37bpn6ifvlh8ilp78qx518dmal6s0lc16gk029hvy1rdlkr2ga"; depends=[BH]; }; RcppProgress = derive2 { name="RcppProgress"; version="0.4.1"; sha256="0yk01hfv961zyp569682k9igvhnwqyg5j0n5fm63sxigj82l2xhi"; depends=[]; }; RcppQuantuccia = derive2 { name="RcppQuantuccia"; version="0.0.2"; sha256="1si5njb8g4g6fjrkqbp3y6z23yxs901nq9kmiwwbqs8di6svc5q3"; depends=[BH Rcpp]; }; - RcppRedis = derive2 { name="RcppRedis"; version="0.1.8"; sha256="05c4c65ayiqyzmkj2mrgwwflgjk54rf9nmb3rhickj16yy9b071q"; depends=[BH RApiSerialize Rcpp]; }; + RcppRedis = derive2 { name="RcppRedis"; version="0.1.9"; sha256="08c2c5d3rn3z89yhlymbr8w145y85hlz1bq3g6kz0kwkjfnkbs1x"; depends=[BH RApiSerialize Rcpp]; }; RcppRoll = derive2 { name="RcppRoll"; version="0.3.0"; sha256="0srzfhzkk42kzrdjnhbb37946jp1p688rgysy6k3i2is8jb21zyb"; depends=[Rcpp]; }; RcppSMC = derive2 { name="RcppSMC"; version="0.2.1"; sha256="0k2k1pj05i6hf7gpar3r4mbv9cs04bd4v657saq9vhy30300vg49"; depends=[Rcpp RcppArmadillo]; }; RcppStreams = derive2 { name="RcppStreams"; version="0.1.1"; sha256="0sa0ndnfm89f8lh3ba6jf3gxaan1g97dhlzbmpkwqj22frgggqjw"; depends=[BH Rcpp]; }; RcppTN = derive2 { name="RcppTN"; version="0.2-2"; sha256="0m2wc5n1fzxv56s4gqqnygb24dbadgrpgjm4bs4hr6qazgjapymf"; depends=[Rcpp]; }; - RcppTOML = derive2 { name="RcppTOML"; version="0.1.3"; sha256="0krw4104m8drgyf53aq22kl5q0abrd0y4j1fvrwsj1dkbkybas05"; depends=[Rcpp]; }; + RcppTOML = derive2 { name="RcppTOML"; version="0.1.4"; sha256="0pr941ljn5wc2cjinw8qbqv0x7aw1ssglfidy030v2rhnnv8s762"; depends=[Rcpp]; }; RcppThread = derive2 { name="RcppThread"; version="0.4.0"; sha256="0snrs66r19zha43xqkgcz1r15f7x8ifg1vyi0d7j175bkmin2jlb"; depends=[Rcpp]; }; RcppXPtrUtils = derive2 { name="RcppXPtrUtils"; version="0.1.0"; sha256="0833j7hy7dpdxkj1m5cfyxzpp7j0n7mxjc5kx32mdn5s43iaf7yh"; depends=[Rcpp]; }; RcppXts = derive2 { name="RcppXts"; version="0.0.4"; sha256="143rhz97qh8sbr6p2fqzxz4cgigwprbqrizxpkjxyhq8347g8p4i"; depends=[Rcpp xts]; }; RcppZiggurat = derive2 { name="RcppZiggurat"; version="0.1.5"; sha256="0zmr3nvm5j0fpwxk3x9kxpwqbr66ldfvd10zy8xlgjbslz9myvfv"; depends=[Rcpp RcppGSL]; }; - Rcrawler = derive2 { name="Rcrawler"; version="0.1.7-0"; sha256="0r8s3d4dby9vn0qc5lbhab4vh3yl5yifi7ipxafsgffdxislnsdw"; depends=[data_table doParallel foreach httr selectr xml2]; }; + Rcrawler = derive2 { name="Rcrawler"; version="0.1.8-0"; sha256="03fp1yi8363zwzbzbw1v763r0d65352pp2wzfk6yq8f5h6jhiaxr"; depends=[data_table doParallel foreach httr selectr xml2]; }; Rcriticor = derive2 { name="Rcriticor"; version="2.0"; sha256="1cnmmcdp2g3syrlld1pm7101cbzxh02cpvqvgsj7mp6zxm2k5plv"; depends=[]; }; Rcsdp = derive2 { name="Rcsdp"; version="0.1.55"; sha256="1sskjf2vv5alnwirz676d8yphzk2a69wkghhkpxb8my1rjlfdgaw"; depends=[]; }; Rcssplot = derive2 { name="Rcssplot"; version="0.3.0"; sha256="1qwrwzyqbwwwjf2zx6712q6wj629vf9rjrgscf0fim10fa6k5grn"; depends=[]; }; Rd2md = derive2 { name="Rd2md"; version="0.0.2"; sha256="07j1nnsk5nyl8kvgvh9f684g6bhc01jiq1fcmq2pnpx57jdzfbpi"; depends=[knitr]; }; - Rd2roxygen = derive2 { name="Rd2roxygen"; version="1.6.2"; sha256="1hkqy97mh68yzkh4bawjrgf1rlhkh3jz2ky84rg3wgz1mkvrrsx2"; depends=[formatR roxygen2]; }; + Rd2roxygen = derive2 { name="Rd2roxygen"; version="1.7"; sha256="0rfhhqibgxapbc9jrv08fnm3p5fqkhj7s9yj7kbcck0lygy1kpx4"; depends=[formatR roxygen2]; }; Rdice = derive2 { name="Rdice"; version="1.0.0"; sha256="1xibvm690808p2g3jch7rh1825yrpgln2hjfclgxjwn822qvs4xr"; depends=[data_table]; }; - Rdimtools = derive2 { name="Rdimtools"; version="0.3.2"; sha256="0wk6sv2ahxscy4nsk826c9rlq8vxgnflg9banwdxhs6qlqhipnlb"; depends=[ADMM CVXR Matrix Rcpp RcppArmadillo Rcsdp Rdpack RSpectra Rtsne]; }; - Rdistance = derive2 { name="Rdistance"; version="1.3.2"; sha256="1ajmr58lgc74727jiydfrh4j6ra7vq8hp8nm3l2s3g2mc8n1mqk5"; depends=[]; }; - Rdpack = derive2 { name="Rdpack"; version="0.8-0"; sha256="0r4mcg7mqb7h0c6pn0vh622vw7kvdpmy51qvhgf753yywfznkwq6"; depends=[bibtex gbRd]; }; - Rdrools = derive2 { name="Rdrools"; version="1.0.3"; sha256="1y805j2xrv8kgh42s5lig07mb76fcz5yrxal0zaykj16cvid8287"; depends=[Rdroolsjars rJava]; }; + Rdimtools = derive2 { name="Rdimtools"; version="0.4.0"; sha256="0wlzzhs9a154r2p06zwn6pgvpall7gp56z6a2ish9gyb9152gsij"; depends=[ADMM CVXR Matrix Rcpp RcppArmadillo RcppDE Rcsdp Rdpack RSpectra Rtsne]; }; + Rdistance = derive2 { name="Rdistance"; version="2.1.2"; sha256="1c9vil4pjd49jmcv7vib98dv31gh794zcxhm30nbv8kx8n16xi0f"; depends=[]; }; + Rdpack = derive2 { name="Rdpack"; version="0.10-1"; sha256="0bbjnw88h54v40hzim00i8yd3p4rk9i84zfdmgcbnylscwvsf0av"; depends=[bibtex gbRd]; }; + Rdrools = derive2 { name="Rdrools"; version="1.1.0"; sha256="0my2x5cwfnds0hjc03363l1ydfk5kch9bv8mj0hgwkjs4b7szw8r"; depends=[dplyr magrittr purrr Rdroolsjars rJava rlang tibble]; }; Rdroolsjars = derive2 { name="Rdroolsjars"; version="1.0.1"; sha256="1l9bc1bwpj10irr973hzkhr04i1f3g998n8hcl2k2i9kgv1naqmz"; depends=[rJava]; }; Rdsdp = derive2 { name="Rdsdp"; version="1.0.4-2"; sha256="05bk6yqvhzvyfzga1dz34w68nlwl2dc8bvhh3ghd07a61fsnkg4x"; depends=[]; }; Rdsm = derive2 { name="Rdsm"; version="2.1.1"; sha256="07fc6c2hv0vvg15va552y54cla1mrqsd75w3zh02vc7yd226l4rj"; depends=[bigmemory]; }; Rdtq = derive2 { name="Rdtq"; version="0.1"; sha256="114pyf95nl132014ygn84xi41c2zf1ii2wfgd1acwnnmfzvdw24s"; depends=[Matrix Rcpp]; }; Rduino = derive2 { name="Rduino"; version="0.1"; sha256="0r1yy3a2n8a4niasfjn77gv130a062i802r7xhbg0abljv5m6ra5"; depends=[serial]; }; ReCiPa = derive2 { name="ReCiPa"; version="3.0"; sha256="019vlvgxnqqlwghxygfqggzp2b4x2pqzdrbhaa703zdhm58k0n1g"; depends=[]; }; - ReIns = derive2 { name="ReIns"; version="1.0.7"; sha256="1r28wyb7yh5aymlnd3yxkqmn4lnfnipfsnpbgl71zql763fchwlg"; depends=[doParallel foreach Rcpp survival]; }; + ReIns = derive2 { name="ReIns"; version="1.0.8"; sha256="1piwmjav32cwki3jhxzv3ld59gddlm5y5dwc8smwk5gzpfypdzm6"; depends=[doParallel foreach Rcpp survival]; }; ReacTran = derive2 { name="ReacTran"; version="1.4.3.1"; sha256="05c9jfvj134gy3by7m3r1fbar0m39vaydr7d2py9cakzs44fqfpj"; depends=[deSolve rootSolve shape]; }; RealVAMS = derive2 { name="RealVAMS"; version="0.4-1"; sha256="13x8yryl5vp3rn6n2hd14ng6cgr3bxkps4y1vanimbwv4faa8116"; depends=[Matrix numDeriv Rcpp RcppArmadillo]; }; Rearrangement = derive2 { name="Rearrangement"; version="2.1"; sha256="0q253nj62rl65vjsq6503r80qa2j35wac8lv7ydp9w260p28z923"; depends=[quantreg]; }; @@ -3235,16 +3366,15 @@ in with self; { RepeatedHighDim = derive2 { name="RepeatedHighDim"; version="2.0.0"; sha256="1n9w4jb25pm0mmsahlfhkp9jmhgp5b21l1g85gm2wbxqkjsg7g0g"; depends=[MASS nlme]; }; Replicate = derive2 { name="Replicate"; version="1.0.1"; sha256="110pvissyv3dx1wpwpngcg18mpmpml49gcmdykip55s1d3ljf791"; depends=[metafor]; }; RepoGenerator = derive2 { name="RepoGenerator"; version="0.0.1"; sha256="0d6s2sqyycaqrg32xdkp3pr5i7qmvwrfrjcd7f94a9y3lz4bz5b5"; depends=[git2r httr rmarkdown rstudioapi]; }; - ReporteRs = derive2 { name="ReporteRs"; version="0.8.10"; sha256="18ivgd3736zcrimcyzfkh5d6h9s1srh7xdz597y596dsssx1lmc6"; depends=[gdtools htmltools knitr png R_utils ReporteRsjars rJava rvg shiny xml2]; }; - ReporteRsjars = derive2 { name="ReporteRsjars"; version="0.0.4"; sha256="0q11jcbkv9ibmkqr3mka0w5d797s8xb0155kcs5inlcacirp6wvy"; depends=[rJava]; }; ResistorArray = derive2 { name="ResistorArray"; version="1.0-28"; sha256="055zr4rybgrvg3wsgd9vhyjpvzdskrlss68r0g7rnj4yxkix0kxz"; depends=[]; }; ResourceSelection = derive2 { name="ResourceSelection"; version="0.3-2"; sha256="08b1aa3183k1y30dwabnd6x353mdp2sn5b908cpv84bs3fdzlrdp"; depends=[MASS Matrix pbapply]; }; RevEcoR = derive2 { name="RevEcoR"; version="0.99.3"; sha256="1nym263ynjdir5kxv35jnmki9mshlplq0sk3xnjd4ac6f1cfbfqj"; depends=[gtools igraph magrittr Matrix plyr purrr stringr XML]; }; Rexperigen = derive2 { name="Rexperigen"; version="0.2.1"; sha256="158ksnd1gvzq7ii0ys2v0wrfnr001hni0i8m77p1fn1arixgmqdw"; depends=[digest jsonlite RCurl]; }; Rfacebook = derive2 { name="Rfacebook"; version="0.6.15"; sha256="0hp2mbm0hnyasizszvh5x9hv7z2q633zck1a1gvk36nbxb1shx7c"; depends=[httpuv httr rjson]; }; - Rfast = derive2 { name="Rfast"; version="1.9.0"; sha256="1v43vakp3bqka4k295imyl95f3hkvnpkbwj61gbm37yxamxvx0s4"; depends=[Rcpp RcppArmadillo RcppZiggurat]; }; + Rfast = derive2 { name="Rfast"; version="1.9.1"; sha256="1kd0ifiw5dd2rl6n5dq9i3bfr0f5r8pxfz8j1sxazf3xsq0zpini"; depends=[Rcpp RcppArmadillo RcppZiggurat]; }; Rfit = derive2 { name="Rfit"; version="0.23.0"; sha256="1gxxipbh7mskrqwrpk1gf1dn8mp3l1v4hgmzii44bppffnxs7slp"; depends=[]; }; Rfmtool = derive2 { name="Rfmtool"; version="3.0.0"; sha256="0hjy66b7d9xp4d8fzhs5zizvwlrdrmlmba2wf9fjraz5ysg0vnxv"; depends=[]; }; + Rfolding = derive2 { name="Rfolding"; version="1.0"; sha256="15lf73zxr1slin9faj9k0z8qkb1g9nb7h080nfv99gsi2ks68ssg"; depends=[]; }; Rga4gh = derive2 { name="Rga4gh"; version="0.1.1"; sha256="0h5y722blkkwn6ask6vjnhl22v9l6511chdm50ig6xcs5dvjam2m"; depends=[httr jsonlite]; }; Rgb = derive2 { name="Rgb"; version="1.6.1"; sha256="0qs3dlv4g45dqphqjm23ky3w6rxh8ff2q6b17kvf57skyf1b1yn8"; depends=[]; }; Rgbp = derive2 { name="Rgbp"; version="1.1.3"; sha256="1340h5rzb4631h6aanrdjl4x4l0h6l5x61qqmckrdf08fw2625lp"; depends=[mnormt sn]; }; @@ -3252,15 +3382,15 @@ in with self; { Rgnuplot = derive2 { name="Rgnuplot"; version="1.0.3"; sha256="0mwpq6ibfv014fgdfsh3wf8yy82nzva6cgb3zifn3k9lnr3h2fj7"; depends=[]; }; RgoogleMaps = derive2 { name="RgoogleMaps"; version="1.4.2"; sha256="112mdm53qx92n2m4ms02sbppckp44l1z19vy99j6gw3jrdprjydl"; depends=[png]; }; Rgretl = derive2 { name="Rgretl"; version="0.2.2"; sha256="18jyp4bxs96ri1a4ifd52aj0q6kd2dygz8pkajbd9whq7bn5ick6"; depends=[lubridate png xml2]; }; - Rhpc = derive2 { name="Rhpc"; version="0.18-185"; sha256="1clw2afvqx8bdz8f5fzqs0ybh95afp5n178hspp36awab34fpd9p"; depends=[]; }; - RhpcBLASctl = derive2 { name="RhpcBLASctl"; version="0.18-185"; sha256="0s950rildshsnfny6kxfw3jls4i50rfmzbg1zma4ilbwswzp7kpq"; depends=[]; }; + Rhpc = derive2 { name="Rhpc"; version="0.18-204"; sha256="0ja2cx6sa8ihxnq96qhxfp43z5zd45b8jfb0y2rzzklnd7kj9kl1"; depends=[]; }; + RhpcBLASctl = derive2 { name="RhpcBLASctl"; version="0.18-205"; sha256="1ls2286fvrp1g7p8v4l6axznychh3qndranfpzqz806cm9ml1cdp"; depends=[]; }; Ricetl = derive2 { name="Ricetl"; version="0.2.5"; sha256="0q87cxzqkkp2bk92q3wnxxsqlkafkd37lp5pki7f87a5vcxlcrak"; depends=[devtools gWidgets gWidgetsRGtk2 plyr readr readxl stringr tidyverse writexl]; }; RidgeFusion = derive2 { name="RidgeFusion"; version="1.0-3"; sha256="10llmrsfpcqrkcbw7zj44kvfy7ywn9rk49n7zplilz8h94zzcmjv"; depends=[mvtnorm]; }; Ridit = derive2 { name="Ridit"; version="1.1"; sha256="02cni6hzf1bsns7vi8vklnhc0pfb5vwqhjnnfnjnnaxpzpsbvdfn"; depends=[]; }; Rilostat = derive2 { name="Rilostat"; version="0.2.1"; sha256="058qz5kn7p8wn3lvw92c11cqpkz9brgf1igmawfkb0lqvj366vyd"; depends=[data_table dplyr DT haven plyr RCurl readr stringr tibble xml2]; }; Rip46 = derive2 { name="Rip46"; version="1.0.2"; sha256="0wfp6fm5mgmjqjkn0c5hvjd95yn4zcv0s8xc5294qf5jqxp8b1w7"; depends=[Rcpp]; }; Risk = derive2 { name="Risk"; version="1.0"; sha256="1i42xcc699syj108mvgklwb30wkf9c9jrg5rmd2ypnqk9mnyg2fg"; depends=[]; }; - RiskPortfolios = derive2 { name="RiskPortfolios"; version="2.1.1"; sha256="1kn0vb4nhm3bxlmk5y2nl5m7a7hdvz3nz0yp8rdigpl6b2dp79w1"; depends=[MASS nloptr quadprog]; }; + RiskPortfolios = derive2 { name="RiskPortfolios"; version="2.1.2"; sha256="10kgr05npq9gyhglvpzk49hsr44rgscnygkv3b0gz7f6jxqkfj9z"; depends=[MASS nloptr quadprog]; }; Ritc = derive2 { name="Ritc"; version="1.0.2"; sha256="03smhxjhjfkc9pxhlgg54b6v2jznpmnws8373qpvn9a9ky5bcq2l"; depends=[minpack_lm]; }; RiverBuilder = derive2 { name="RiverBuilder"; version="0.1.1"; sha256="06cd1m4liv2bsh2sxplq2zl45g9zq8gsgvh14d0zr0pqm8z4dsyw"; depends=[]; }; Rivivc = derive2 { name="Rivivc"; version="0.9"; sha256="0gl3040pp9nqm4g2ympnx80z64zfnn1hfsxka8ynd2cqhjn3b5i1"; depends=[signal]; }; @@ -3268,11 +3398,13 @@ in with self; { RkMetrics = derive2 { name="RkMetrics"; version="1.3"; sha256="1k6vnr1r4h69iznib638z45gd0f8wc4g4h0ji9f0017883g77li1"; depends=[]; }; Rknots = derive2 { name="Rknots"; version="1.3.2"; sha256="1krhma8hy3l5lbm6d8rxjlj9jw1zrd16h4wy4p1clfa5vlhh3bwi"; depends=[bio3d rgl rSymPy]; }; Rlab = derive2 { name="Rlab"; version="2.15.1"; sha256="1pb0pj84i1s4ckdmcglqxa8brhjha4y4rfm9x0na15n7d9lzi9ag"; depends=[]; }; - Rlabkey = derive2 { name="Rlabkey"; version="2.2.1"; sha256="1nsaab7nysld1gdqnpxd9g68vzs363szyinbfn6j2c7ch0vqcrka"; depends=[httr Rcpp rjson]; }; + Rlabkey = derive2 { name="Rlabkey"; version="2.2.3"; sha256="02srz4726qkc0700fzdk4mk88dl8m84b0ysyrim19jq7yyhx3da0"; depends=[httr jsonlite Rcpp]; }; + Rlda = derive2 { name="Rlda"; version="0.2.5"; sha256="1wv5n1r7m9jimmv4dcih967hy6lmmgmywvch716rqdpayngp399h"; depends=[coda doParallel foreach gtools Rcpp RcppArmadillo RcppProgress]; }; Rlibeemd = derive2 { name="Rlibeemd"; version="1.4.0"; sha256="0nnkblrgycvfwn0lb9j92f5wpln69kk54z4irwi35rrfl31f689m"; depends=[Rcpp]; }; Rlinkedin = derive2 { name="Rlinkedin"; version="0.2"; sha256="15sbiis1d0s466nqk1adjhflb01sb9kn25f4y6sagkdggvyz6b56"; depends=[httpuv httr XML]; }; - Rlinsolve = derive2 { name="Rlinsolve"; version="0.2.0"; sha256="08ib0jjqicscn4mx5yv25q0x66iycx8jhazvjb47nqvn24mirprp"; depends=[BH bigmemory Matrix Rcpp RcppArmadillo Rdpack]; }; + Rlinsolve = derive2 { name="Rlinsolve"; version="0.3.0"; sha256="1kvlpfrw4w2dykpdym9sg6h2ghavnm7lwxn6bzqldwg53wlinvxk"; depends=[BH bigmemory Matrix Rcpp RcppArmadillo Rdpack]; }; Rlof = derive2 { name="Rlof"; version="1.1.1"; sha256="1px6ax2mr2agbhv41akccrjdrvp8a9lmhymp0cn8fjrib0ig8vql"; depends=[doParallel foreach]; }; + Rmagic = derive2 { name="Rmagic"; version="1.3.0"; sha256="13ai04py36lzppa4jswxvmsmm5j83afv17viiik5yglwjr9rbinj"; depends=[ggplot2 Matrix reticulate]; }; Rmalschains = derive2 { name="Rmalschains"; version="0.2-4"; sha256="1rzslwwp6ikp3zky2zlqylsd8nmhv13iz2h87kwxfkh3611x28yk"; depends=[Rcpp]; }; RmarineHeatWaves = derive2 { name="RmarineHeatWaves"; version="0.17.0"; sha256="09lrrxnkkfnbidnmag1czx2xzssdl09348nkc6pqgq6xz36a3mqc"; depends=[dplyr ggplot2 lazyeval lubridate plyr raster rlang tibble tidyr zoo]; }; RmecabKo = derive2 { name="RmecabKo"; version="0.1.6.2"; sha256="1i08wlfd14wmvwrsvjyhgzxkwzfp4jiwbzymw8m25pvyjxgi7jmy"; depends=[Rcpp stringr]; }; @@ -3280,28 +3412,30 @@ in with self; { Rmixmod = derive2 { name="Rmixmod"; version="2.1.2"; sha256="06d8iwnjd9n4rfmcsnqzhi5ai0rxlc1qwij5s7ixkncq8c402a2k"; depends=[Rcpp RcppEigen]; }; RmixmodCombi = derive2 { name="RmixmodCombi"; version="1.0"; sha256="0cwcyclq143938wby0aj265xyib6gbca1br3x09ijliaj3pjgdqi"; depends=[Rcpp Rmixmod]; }; Rmosek = derive2 { name="Rmosek"; version="1.2.5.1"; sha256="0zggv699s93i9g98qjs4ci2nprgfkzq45lpzgrbhldsxiflf27gz"; depends=[Matrix]; }; - Rmpfr = derive2 { name="Rmpfr"; version="0.7-0"; sha256="0jpj3nl76jd6vc2p1xwr8jl62q8ckwsdaxqnk9b20srkq63mfrig"; depends=[gmp]; }; + Rmpfr = derive2 { name="Rmpfr"; version="0.7-1"; sha256="0172px5ryi7i0gyyin9z2bzif8vnj292gk0s1w5p3c12g9hj2c4v"; depends=[gmp]; }; Rmpi = derive2 { name="Rmpi"; version="0.6-7"; sha256="1b62gs7w1xqadqd7ir41jnxlcf14gcqfxd0915kn9ckdlsdrh0sw"; depends=[]; }; RnavGraphImageData = derive2 { name="RnavGraphImageData"; version="0.0.4"; sha256="1k1gnkghap878fck0bbz9mm0fr4cli6lh1d11r0cf47fvl6cc4gr"; depends=[]; }; - RndTexExams = derive2 { name="RndTexExams"; version="1.4.1"; sha256="1gi96hfd7dkvmbvy6hj25g1l7nwk4yhxkdjx1l3ws3c2zpi27cvj"; depends=[CopyDetect data_table stringi stringr]; }; - Rnets = derive2 { name="Rnets"; version="0.9.8"; sha256="0lcgapspl7ndrf3gxkrsv1172f2sv2587zaa1q6b950zympcvcj3"; depends=[data_table glasso igraph]; }; - Rnightlights = derive2 { name="Rnightlights"; version="0.2.1"; sha256="07fd49i0cybnr5d14qf7d9p95frw8qjslrx9y2bwdrx89fvp0gk8"; depends=[cleangeo data_table doSNOW dplyr ff ffbase foreach gdalUtils lubridate R_utils raster readr reshape2 rgdal rgeos rvest rworldmap settings snow sp stringr xml2]; }; + RndTexExams = derive2 { name="RndTexExams"; version="1.5"; sha256="17azzxcawqqvfdbw1i34n03bj5yla8npyi7xh3pnx22xb7sbwq3x"; depends=[data_table stringi stringr]; }; + Rnets = derive2 { name="Rnets"; version="1.0.2"; sha256="1mym5zd7717mq6dlnv9b3qry7cfa5ylp3h596dbnnq5b1rhbbfis"; depends=[data_table glasso igraph rlang stringr]; }; + Rnightlights = derive2 { name="Rnightlights"; version="0.2.3"; sha256="014bw1xln699y0zjaf5xifc2f3yl9zgb0acv7v1qw0q478ka9aak"; depends=[cleangeo data_table doSNOW dplyr ff ffbase foreach lubridate R_utils raster readr reshape2 rgdal rgeos rvest rworldmap settings snow sp stringr xml2]; }; + Rnmr1D = derive2 { name="Rnmr1D"; version="1.2.1"; sha256="1lwkswg2jr5qwxzcx8g91m63caij85p7yx3kk8w75i8v0j8iac10"; depends=[base64enc doParallel foreach igraph impute MASS MassSpecWavelet Matrix ptw Rcpp signal speaq XML]; }; Rnumerai = derive2 { name="Rnumerai"; version="0.3"; sha256="0zvfp9zp73gm6pflf9bx1xk1s45xwwvcd56cbris08d2zfj3b3nl"; depends=[httr lubridate]; }; - RobAStBase = derive2 { name="RobAStBase"; version="1.0.2"; sha256="10bbv9jjh6zznkzrlkx7dahahicab8ld11ah1mar2kz09bdz3kih"; depends=[distr distrEx distrMod RandVar rrcov startupmsg]; }; - RobAStRDA = derive2 { name="RobAStRDA"; version="1.0.2"; sha256="1lyp2y38jnwv8ggrv9pdzprpf2gs62w1mpzwcqcbrmy7fzjsym0b"; depends=[]; }; - RobLox = derive2 { name="RobLox"; version="1.0"; sha256="0y193xai0mfwpm6zhxgy21h4yrlqrpvwx84bj4xnr8ql87wznh7q"; depends=[Biobase distr distrMod lattice RandVar RColorBrewer RobAStBase]; }; - RobLoxBioC = derive2 { name="RobLoxBioC"; version="0.9"; sha256="0ia7vn8x8whyp8kl7mpwd6fd0yv0y3pb1mppnh2329x7xdvcs5j4"; depends=[affy beadarray Biobase BiocGenerics distr lattice RColorBrewer RobLox]; }; + RobAStBase = derive2 { name="RobAStBase"; version="1.1.0"; sha256="1szxlqgm913fsgi4i7ccnv2rcj81bssl62ahh0g0818dx7zzblxb"; depends=[distr distrEx distrMod RandVar rrcov startupmsg]; }; + RobAStRDA = derive2 { name="RobAStRDA"; version="1.1.0"; sha256="0hna14757g372ysyyb47529j1q0796k6nzf3lw4ba7ryjcydzw2v"; depends=[]; }; + RobExtremes = derive2 { name="RobExtremes"; version="1.1.0"; sha256="10b8jbsdnw0zyvx8yjx775mcy64bfqqafy2sw4lfcji1sz3xqjxl"; depends=[actuar distr distrEx distrMod evd RandVar RobAStBase RobAStRDA robustbase ROptEst startupmsg]; }; + RobLox = derive2 { name="RobLox"; version="1.1.0"; sha256="14k8xkxrw1ji1sbw49mxh6n0rpgqzn68srh5ch6k1i4nc5c6zmr5"; depends=[Biobase distr distrMod lattice RandVar RColorBrewer RobAStBase]; }; + RobLoxBioC = derive2 { name="RobLoxBioC"; version="1.1.0"; sha256="17yp0jwibf839nwyfaxiz46ckgljssl9gzhhz89a7d12fyfhbb3p"; depends=[affy AnnotationDbi beadarray Biobase BiocGenerics distr distrMod lattice RColorBrewer RobLox]; }; RobPer = derive2 { name="RobPer"; version="1.2.2"; sha256="0631qfpz61606r50vzn7b3h7arfwxcs8j13q1hg779qx60kwrliy"; depends=[BB quantreg rgenoud robustbase]; }; RobRSVD = derive2 { name="RobRSVD"; version="1.0"; sha256="07z5fw8j5lq7nyxgkvb9i4iwb5inddz2ib4m2bjx6q4c1ricpqz9"; depends=[]; }; - RobRex = derive2 { name="RobRex"; version="0.9"; sha256="0ii539mjq462n1lbnyv3whl8b1agvhvlz31wwyz911gb40isl639"; depends=[ROptRegTS]; }; + RobRex = derive2 { name="RobRex"; version="1.1.0"; sha256="0nszr0dnk8v7raa8sk9zcs4a5xwjv7qzhzsryach777nr9vcdafh"; depends=[distr RandVar RobAStBase ROptRegTS]; }; Robocoap = derive2 { name="Robocoap"; version="0.1-1"; sha256="0aj6iv85a1zfaknjhrzf6lnf0qn726dvnj4dywg9nii1kkqrkq2w"; depends=[data_table igraph markovchain tm]; }; RobustAFT = derive2 { name="RobustAFT"; version="1.4-3"; sha256="0x7sn2y9s6nwzlj8476irv893crwag6v4k7w3w589k33kkz5n2hp"; depends=[robustbase survival]; }; RobustCalibration = derive2 { name="RobustCalibration"; version="0.5.1"; sha256="0wsnvryvrl37acljrda2dm1d8aynqiy66yd2i857m035whixfpqa"; depends=[Rcpp RcppEigen RobustGaSP]; }; - RobustGaSP = derive2 { name="RobustGaSP"; version="0.5.5"; sha256="0asxhzybpfmz3zzhr32hvcxrdmdsjlqjvxiihrxc8f4w3qwnzb82"; depends=[Rcpp RcppEigen]; }; + RobustGaSP = derive2 { name="RobustGaSP"; version="0.5.6"; sha256="0lrdsxg1b8pb1blf0pmla18jykjlzflrmgi7g8kccrgv725clifd"; depends=[Rcpp RcppEigen]; }; RobustRankAggreg = derive2 { name="RobustRankAggreg"; version="1.1"; sha256="1pslqyr1lji1zvcrwyax4zg2s81p1jnhfldz8mdfhsp5y7v8iar3"; depends=[]; }; RockFab = derive2 { name="RockFab"; version="1.2"; sha256="1b5mhfll5vmqwl4pblmclyx9604vn07jyza02rm0jcsx915ms8sc"; depends=[EBImage rgl]; }; - Rodam = derive2 { name="Rodam"; version="0.1.3"; sha256="0cfqrvvwkz4marmkxxl2ihi5gdbmr51q2r0sk1lkppa5drdh8cb5"; depends=[RCurl]; }; - RonFHIR = derive2 { name="RonFHIR"; version="0.2.0"; sha256="1kcbv8ibqh7jb3dpj4p73vd168c6vlwi08s9cshl4w6hqbz1pklg"; depends=[httr jsonlite R6]; }; + Rodam = derive2 { name="Rodam"; version="0.1.4"; sha256="0vqhzy6gajkqh0pdckyc6cpxm97jb6bmw2vpcd0fi622fh63r0nl"; depends=[RCurl]; }; + RonFHIR = derive2 { name="RonFHIR"; version="0.3.0"; sha256="1fxcaf1zzaahbywvkvafillyqi41ldfa0jdfn6m8hz0wls7b7mz1"; depends=[httr jsonlite R6 stringr]; }; Rook = derive2 { name="Rook"; version="1.1-1"; sha256="00s9a0kr9rwxvlq433daxjk4ji8m0w60hjdprf502msw9kxfrx00"; depends=[brew]; }; RootsExtremaInflections = derive2 { name="RootsExtremaInflections"; version="1.1"; sha256="11wybhw180r4zaqwfs301zwzfzprwwl4hiyhjj78l3mnxgdnmwz7"; depends=[doParallel foreach iterators]; }; Rothermel = derive2 { name="Rothermel"; version="1.2"; sha256="0zrz2ck3q0vg0wpa4528rjlrfnvlyiy0x1gr5z1aax1by7mdj82s"; depends=[ftsa GA]; }; @@ -3311,20 +3445,23 @@ in with self; { RpeakChrom = derive2 { name="RpeakChrom"; version="1.1.0"; sha256="1r8f6knpz83arz2kabizx5yyh1myg0h310qlwh8rmy88cdxi1ps9"; depends=[ggplot2 minpack_lm pracma ptw]; }; Rphylip = derive2 { name="Rphylip"; version="0.1-23"; sha256="0kpqmik4bhr74ib8yvaavr10z4v4w3li5vibdhz7lvz35jfirg9r"; depends=[ape]; }; Rphylopars = derive2 { name="Rphylopars"; version="0.2.9"; sha256="19y0j5vh82sa9jigylxhv0s0hgjyhx3xq4blvk55jhpj8v7iyiky"; depends=[ape doBy geiger MASS Matrix mvnmle phylolm phytools Rcpp RcppArmadillo]; }; - Rpolyhedra = derive2 { name="Rpolyhedra"; version="0.2.5"; sha256="1q24vpbzig7pr7l3nk24vs8qb476l6mcb02v6sjk7md1hrysk34y"; depends=[futile_logger R6 rgl stringr testthat XML]; }; + Rpoet = derive2 { name="Rpoet"; version="1.0.1"; sha256="1a1km5fbzvqwjgky0n31gpafi75s6afyqn0ivh15ikq40a3adir5"; depends=[httr jsonlite stringr]; }; + Rpolyhedra = derive2 { name="Rpolyhedra"; version="0.2.8"; sha256="02zgmhcgawkqmc51m9cmkrawx96d2zqinnif13pqy0hibn94aibb"; depends=[digest futile_logger R6 rgl stringr testthat XML]; }; Rpoppler = derive2 { name="Rpoppler"; version="0.1-0"; sha256="19nvv45ahp0c241p1xzlq0sq5qarqg66jw5f1anhqnfi2hi91hcm"; depends=[]; }; Rprofet = derive2 { name="Rprofet"; version="2.2.0"; sha256="1s0jkq83vfc9jsggnwm31r366b10n6sri2vzpwxybzpjq3d3w5qr"; depends=[binr ClustOfVar ggplot2 gridExtra plyr sqldf stringr]; }; Rquake = derive2 { name="Rquake"; version="2.4-0"; sha256="14s2mjq9qqxfvlwmq9126h67y5wr7irlc7945pgv1ab9hl1lgmz8"; depends=[GEOmap MBA minpack_lm rgl RPMG RSEIS]; }; Rramas = derive2 { name="Rramas"; version="0.1-5"; sha256="0wy0flzp68mikq4v9k5pv6hbzx0w9mpa74dwx79i3iiddn0ylby6"; depends=[diagram]; }; - Rraven = derive2 { name="Rraven"; version="1.0.3"; sha256="076c7qki4whl6hb5918mdyn3iljgvd31c4c4lydbpwx0x0x1lxqn"; depends=[dplyr kableExtra pbapply vegan warbleR]; }; + Rraven = derive2 { name="Rraven"; version="1.0.4"; sha256="1hdq0yqjc4s0bga73px8ybghxyn0xpgvjxmyzkx0js430hyyx84r"; depends=[dplyr kableExtra pbapply warbleR]; }; Rrdrand = derive2 { name="Rrdrand"; version="0.1-16"; sha256="0j9yyvq8r1cgwj3kw1ak6hyazr67f2q0c1m651wdm0wcvm1ajx7f"; depends=[]; }; Rsampletrees = derive2 { name="Rsampletrees"; version="1.0.2"; sha256="1wz3dp1myjkxzf9l5mfli3dfbkc2fwg70xx7m9cxa06vq0a4w5pv"; depends=[ape haplo_stats Rcpp]; }; Rsampling = derive2 { name="Rsampling"; version="0.1.1"; sha256="14rp3j7iaii4rc3jkbijmbgvlagxxqjkz3vvfwwpxix43rsi8zsk"; depends=[]; }; Rserve = derive2 { name="Rserve"; version="1.7-3"; sha256="09rha4p86vak7ss721mwp5bm5ig09xam8zlqv63n9wf36v3kdmpn"; depends=[]; }; RsimMosaic = derive2 { name="RsimMosaic"; version="1.0.3"; sha256="0jlzrs9xxlpazvq3iw8znk0bd00bzlry7bgxsxq7xl23akizj0ji"; depends=[fields jpeg RANN]; }; - Rsmlx = derive2 { name="Rsmlx"; version="1.0.1"; sha256="1vzdzidi0i4gcpdmxcsfi6qh66wk20r9cw5s3y8fqd0nkdjlsagx"; depends=[ggplot2 gridExtra MASS RJSONIO]; }; + Rsmlx = derive2 { name="Rsmlx"; version="1.1.0"; sha256="1ljw8xnzr9asv1vxim86prm8wana6gy72388f273hv36vpr2h3w5"; depends=[ggplot2 gridExtra MASS RJSONIO]; }; Rsolnp = derive2 { name="Rsolnp"; version="1.16"; sha256="0w7nkj6igr0gi7r7jg950lsx7dj6aipgxi6vbjsf5f5yc9h7fhii"; depends=[truncnorm]; }; Rsomoclu = derive2 { name="Rsomoclu"; version="1.7.5.1"; sha256="09dsiic9bfy1yq7bwspidn6w21vff3jay8812abydz1l1fz4qv5i"; depends=[kohonen Rcpp]; }; + Rspc = derive2 { name="Rspc"; version="1.2.2"; sha256="1cnzqpnh009wfs51dc4id9q3giaa8b6dc75b1lhzpwcvw0cxcy4y"; depends=[]; }; + Rspotify = derive2 { name="Rspotify"; version="0.1.2"; sha256="1q8ajjx5ghlgxgch9gifvhi2gmsi0ph8pygwrb9jrd3ijahlw5k4"; depends=[dplyr httr jsonlite magrittr plyr]; }; Rssa = derive2 { name="Rssa"; version="1.0"; sha256="0alh0vq3qqzrn1kklqfp52qknasfq6yzk2dprz3g9pyq05qhmhlw"; depends=[forecast lattice svd]; }; Rsurrogate = derive2 { name="Rsurrogate"; version="2.0"; sha256="1pjyhlxqi8mcbywa7qa1vxgxr5jca0nc9vm1bx53vr231wgnb7gf"; depends=[survival]; }; Rsymphony = derive2 { name="Rsymphony"; version="0.1-28"; sha256="02x54ygbcd2600prcww1l9pb02skn96rj0jdljpky1228jbib4nx"; depends=[]; }; @@ -3334,30 +3471,32 @@ in with self; { Rtsne = derive2 { name="Rtsne"; version="0.13"; sha256="17crbdi80q4g2pwp9v7j3bdaznk96qlrqx01zvj3wwqippizyfqw"; depends=[Rcpp]; }; Rttf2pt1 = derive2 { name="Rttf2pt1"; version="1.3.7"; sha256="12hf9r3mhjr9sawdvf7qhjf1zph2q64f77i81jwvy7awidbm0kja"; depends=[]; }; Rtts = derive2 { name="Rtts"; version="0.3.3"; sha256="0jphdpnpbq0d48kzflilxlh6psk282hi1hz3rmnwnd0rx5iyg624"; depends=[RCurl]; }; - RtutoR = derive2 { name="RtutoR"; version="1.1"; sha256="132vyqkzjzwms9sbw6dmkqqk45si89r0xvy477xl98k14a2q4jlw"; depends=[colourpicker devtools dplyr DT FSelector ggplot2 ggthemes plotly ReporteRs rlang rmarkdown shiny shinyBS shinydashboard shinyjs tidyr]; }; + RtutoR = derive2 { name="RtutoR"; version="1.2"; sha256="19wmi30b5i6zj673d76gxl6j0k3ppfyl5fqrcs0dwmmadrrvbajq"; depends=[colourpicker devtools dplyr DT FSelector ggplot2 ggthemes officer plotly rlang rmarkdown shiny shinyBS shinydashboard shinyjs tidyr]; }; Rtwalk = derive2 { name="Rtwalk"; version="1.8.0"; sha256="0zxf66lsfq8by40flv34xzd5yy0wa1ah9li1d0h7f0yh9nbwhxl5"; depends=[]; }; Ruchardet = derive2 { name="Ruchardet"; version="0.0-3"; sha256="0dgldi6fgp949c3455m9b4q6crqv530jph210xzph41vgw8a2q2v"; depends=[Rcpp]; }; Runiversal = derive2 { name="Runiversal"; version="1.0.2"; sha256="0667mspsjydmxi848c6wsf14gz72bmdj9b3lilma92b7fhqnv7ai"; depends=[]; }; Runuran = derive2 { name="Runuran"; version="0.24"; sha256="1528jzpg0m4gya63xjf7ya4x1c96anm6bpzjgsa1vq1a4dz9m4y9"; depends=[]; }; RunuranGUI = derive2 { name="RunuranGUI"; version="0.3"; sha256="1h2bcc443z8vp4hjf4vss4ds5n6zc6x70kmw13b2431f56jq12fa"; depends=[cairoDevice gWidgets gWidgetsRGtk2 RGtk2 Runuran rvgtest]; }; - Rvcg = derive2 { name="Rvcg"; version="0.17"; sha256="0ssmi8mqmq82qrw0hzrmfqpwnkxwdlfa6j049r4l3gn28cfqhg1j"; depends=[Rcpp RcppArmadillo RcppEigen]; }; + Rvcg = derive2 { name="Rvcg"; version="0.18"; sha256="0a9022ps8cddmblgyzzvfyb77n206dvbv0b7fpnfplis4s68zjkf"; depends=[Rcpp RcppArmadillo RcppEigen]; }; Rvmmin = derive2 { name="Rvmmin"; version="2018-4.17"; sha256="0mhzzwk311wa157l3n4x5x038asvjd81l45g1jclfsjr0smsffym"; depends=[optextras]; }; Rvoterdistance = derive2 { name="Rvoterdistance"; version="1.1"; sha256="16il36hkq1j6gyl5d8bx5khiiv6fy2m8vkhwiaaiqsliw2sspy4j"; depends=[Rcpp]; }; Rwave = derive2 { name="Rwave"; version="2.4-8"; sha256="1rmqwyj2r84sii0vfqhyhpi3n1n1zia2ca627fq9ksvwn110nrvh"; depends=[]; }; + Rwhois = derive2 { name="Rwhois"; version="1.0.3"; sha256="06mx98wi6r265ykkk81hk17yjkym6ar7c2cwp962ijfk3lxwc9l4"; depends=[stringr]; }; Rwinsteps = derive2 { name="Rwinsteps"; version="1.0-1"; sha256="0kzngkan9vydibnr3xm4pyz4v6kz0r4h19f0ngqpri07fkhdsxzd"; depends=[]; }; RxCEcolInf = derive2 { name="RxCEcolInf"; version="0.1-3"; sha256="04d6ffl4qs2vjbk0ibvyq17i2l26qnvxr72s6p3f8q4px33rh4kh"; depends=[lattice MASS MCMCpack mvtnorm]; }; - RxODE = derive2 { name="RxODE"; version="0.7.2-5"; sha256="04irzzv7n7jax1ricdwsmbw0gjn2x4d7cz7hg6y81qhjw4p8qgdi"; depends=[brew cli crayon digest dparser inline magrittr Matrix memoise mvnfast PreciseSums R_utils Rcpp RcppArmadillo rex]; }; + RxODE = derive2 { name="RxODE"; version="0.8.0-8"; sha256="1kwgy39dl8vpg2g7ldalz0i54lcw8568x1rfnvflqk69zz11rdpj"; depends=[brew cli crayon digest dparser inline magrittr Matrix memoise mvnfast n1qn1 PreciseSums R_utils Rcpp RcppArmadillo rex]; }; RxnSim = derive2 { name="RxnSim"; version="1.0.3"; sha256="0fi4aic2brfbl6rsnnfwqq7l8ygvlmr98w0v749l3djpgn7sfrig"; depends=[data_table fingerprint rcdk rJava]; }; - Ryacas = derive2 { name="Ryacas"; version="0.3-1"; sha256="13qvd5gpdrjgzf6isk3529khd02852y3ajmpp5vl8vn9k1jxp86v"; depends=[Rcpp XML]; }; + Ryacas = derive2 { name="Ryacas"; version="0.3-4"; sha256="05y7q6d69nmkgwy1ycw0kqv7hmif5yqsrly3p3psrfsbfvvjl3fj"; depends=[Rcpp xml2]; }; S2sls = derive2 { name="S2sls"; version="0.1"; sha256="0qq1rff2cdgrm5rj69jxgrl71i0wmzyn424fdvcg02zdv9ggqhd3"; depends=[spanel]; }; SACCR = derive2 { name="SACCR"; version="2.1"; sha256="184mw9q25b06zar4ii3na7c4x28ly922d5csfqkw9b07mdp81k3h"; depends=[data_tree jsonlite Trading]; }; SACOBRA = derive2 { name="SACOBRA"; version="0.7"; sha256="12aj4ghs3i3ks749z0l95ipv8gi33xgggkyjf21zvnzmb1dgphys"; depends=[testit]; }; SADEG = derive2 { name="SADEG"; version="1.0.0"; sha256="02ilykbdanx1isbd80c43hqpzkckq6dg40y0rklcnck6v96qky3n"; depends=[]; }; SADISA = derive2 { name="SADISA"; version="1.0"; sha256="0v68k6pwcr2hfsffkcrvpgfwciwir2jsg3q1kvr0ka5iiizpliz3"; depends=[DDD pracma subplex]; }; - SAFD = derive2 { name="SAFD"; version="1.0-1"; sha256="1h9hw66irq2c1ciz502r5h8h9hx32jwhrp9dwl91qlknlj6s1bxr"; depends=[]; }; + SAFD = derive2 { name="SAFD"; version="2.0"; sha256="1ing0zkhl7f9pdcddivp3ii2siaxrrh0al7cdh1r92r4b93kfr70"; depends=[]; }; SALES = derive2 { name="SALES"; version="1.0.0"; sha256="1kjmlwa4v2i7hzm947xby9jr0irsf4c851f7jyqyhqna9c65rx0g"; depends=[Matrix]; }; SALTSampler = derive2 { name="SALTSampler"; version="1.1.0"; sha256="1lh1w5kcx2sqv5czpfypdbq5mw7pxjbdk0vyg23zzjs26ynbdkn9"; depends=[lattice]; }; SAM = derive2 { name="SAM"; version="1.0.5"; sha256="1fki43bp6kan6ls2rd6vrp1mcwvz92wzcr7x6sjirbmr03smcypr"; depends=[]; }; + SAMCpack = derive2 { name="SAMCpack"; version="0.1.1"; sha256="1nnrfc74hd39vnb94lxwfjksmjaz62x0alc2ga46gqyygrrg57g5"; depends=[Rcpp RcppArmadillo RcppXPtrUtils Rdpack]; }; SAMM = derive2 { name="SAMM"; version="0.0.1"; sha256="1yyqci1c0xk5pqi09v3b7p5y0dwbrg1wlsyscfnw6qxwr707y23j"; depends=[Rcpp RcppArmadillo]; }; SAMUR = derive2 { name="SAMUR"; version="0.6"; sha256="0iyv7ljjrgakgdmpylcxk3m3xbm2xwc6lbjvl7sk1pmxvpx3hhhc"; depends=[Matching]; }; SAMURAI = derive2 { name="SAMURAI"; version="1.2.1"; sha256="02fipbjcsbp2b2957x6183z20icv1yly2pd1747nyww9bmpa7ycm"; depends=[metafor]; }; @@ -3370,6 +3509,7 @@ in with self; { SASmixed = derive2 { name="SASmixed"; version="1.0-4"; sha256="0491x4a3fwiy26whclrc19alcdxccn40ghpsgwjkn9sxi8vj5wvm"; depends=[]; }; SASxport = derive2 { name="SASxport"; version="1.6.0"; sha256="1g8sfi61im9i04whybwqq4rl6glisbziqaag1mdfqykxryakjf04"; depends=[Hmisc stringi]; }; SAVE = derive2 { name="SAVE"; version="1.0"; sha256="1m9rrga8x00hlvn0c1jcz6yz14pdm6h3dq14905mq49sw63c7zll"; depends=[coda DiceKriging]; }; + SAVER = derive2 { name="SAVER"; version="1.1.1"; sha256="1jkyxnpvbm6zrhf2q9i98gchv786wh83mx0i1vnz2hqa766jk2nj"; depends=[doParallel foreach glmnet iterators Matrix]; }; SBRect = derive2 { name="SBRect"; version="0.26"; sha256="16g0ciy9q9irypsl8x36i0lavl41j3af13r2si0by8q6wj56pxi4"; depends=[rJava]; }; SBSA = derive2 { name="SBSA"; version="0.2.3"; sha256="1v23lzzziyjlvgn5p2n1qcq2zv9hsyz2w15lbnfi5wvinxhlg8sc"; depends=[Rcpp RcppArmadillo]; }; SBSDiff = derive2 { name="SBSDiff"; version="0.1.0"; sha256="0mw1646dmhxw6zz4pq7j0g3mf9bjn72g43sq7m72r8ma8ciqj7r2"; depends=[]; }; @@ -3378,15 +3518,18 @@ in with self; { SCCS = derive2 { name="SCCS"; version="1.0"; sha256="0v1ycyx45jlv4y82q0kpcmmfcaaspmkk9nd89k6cfh24n6zf9j6w"; depends=[corpcor dummies fda gnm R_methodsS3 survival]; }; SCEPtER = derive2 { name="SCEPtER"; version="0.2-1"; sha256="19sphwcsj2z05dvpmz7vgxykzyghkfn79jwqvk6d66daman679mv"; depends=[MASS]; }; SCEPtERbinary = derive2 { name="SCEPtERbinary"; version="0.1-1"; sha256="0rab0widfndx94dn1nchhs06q0d57vq2n3xy79p130l9rgp9v489"; depends=[MASS SCEPtER]; }; - SCGLR = derive2 { name="SCGLR"; version="2.0.3"; sha256="03v76nh6ng41hh4lm27r8ipf382sj98dyl9lh4fzl4y6ff1vwzzj"; depends=[expm Formula ggplot2 Matrix pROC scales]; }; + SCGLR = derive2 { name="SCGLR"; version="3.0"; sha256="10hsvcjgsycap6wkp06snp2zab1ppsp78kyncpbjnm3vp84qm0nz"; depends=[ade4 expm Formula ggplot2 Matrix pROC]; }; SCI = derive2 { name="SCI"; version="1.0-2"; sha256="1jvzkdv15ifgf6a3zjfzzcgw2y2vg0wp7yhiamiaqp8xkm142w49"; depends=[fitdistrplus lmomco]; }; + SCINA = derive2 { name="SCINA"; version="1.0.1"; sha256="05sdg2l2jvwl95c0r11l22wjzqjygc4g1y6awmcx7jz0zv8gmnhx"; depends=[gplots MASS]; }; SCMA = derive2 { name="SCMA"; version="1.2.1"; sha256="17hn3axhmd6wchh1zmgrj026y5yhg6w68d1mif38rrf5cb2wwjnq"; depends=[]; }; SCORER2 = derive2 { name="SCORER2"; version="0.99.0"; sha256="1a28wga69ip9s98ch2dqgl0qkwa3w6frmaqcvhclc360ik813mxq"; depends=[]; }; SCORPIUS = derive2 { name="SCORPIUS"; version="1.0.2"; sha256="01rg3c5i5wbdbkssmzr9x8chd9qm3ijdgvdh1cba6ry9y88f6ry5"; depends=[dplyr dynutils ggplot2 magrittr MASS mclust pbapply pheatmap princurve purrr ranger RColorBrewer reshape2 tidyr TSP]; }; + SCPME = derive2 { name="SCPME"; version="1.0"; sha256="0yhsaaa349wbrswcvp7w8c52wzp7rs3528rs4wqa8b3r3fh983mh"; depends=[doParallel dplyr foreach ggplot2 Rcpp RcppArmadillo RcppProgress]; }; SCRSELECT = derive2 { name="SCRSELECT"; version="1.3-3"; sha256="118vwnd5gggvdhq7fbs0553l84vh5mhiag41q4svprd7p0pqd9hd"; depends=[mvtnorm]; }; SCRT = derive2 { name="SCRT"; version="1.2.2"; sha256="1x6bzcgb5blavj4zdw4jam5r8yad3plyfzk31vz9pjv39784k229"; depends=[]; }; SCVA = derive2 { name="SCVA"; version="1.2.1"; sha256="1ixy4ybw3c9w6q8csjv27r5f9x6988zrbr2a3yybhyw8xmkszc4v"; depends=[]; }; SCperf = derive2 { name="SCperf"; version="1.1.1"; sha256="1kqi3sv9ds58l20pdcnjrrbf7fin82j73yqj5rbx4kjdw560ylb2"; depends=[]; }; + SDALGCP = derive2 { name="SDALGCP"; version="0.1.0"; sha256="1ll39ws3hlz07v180g8k55z7ziyrqghndpvd0wp0pc85mw5i6f8s"; depends=[maptools Matrix pbapply pdist plyr PrevMap progress raster sp spatstat splancs]; }; SDD = derive2 { name="SDD"; version="1.2"; sha256="0wzgm1hgjv5s00bpd7j387qbvn5zvyrrd5fr2rgyll4cw9p4sd33"; depends=[Hmisc rgl rpanel sm tseries]; }; SDDE = derive2 { name="SDDE"; version="1.0.1"; sha256="14vql1bypn409w9xcx1jdzff6apiagcz2wng3y24h3mk7yjv9bzy"; depends=[doParallel foreach igraph iterators]; }; SDEFSR = derive2 { name="SDEFSR"; version="0.7.1.0"; sha256="1pknkda7iaq5247557b93kc3cf2ih7b3wpqpkqyfgfay3ci9kg16"; depends=[]; }; @@ -3413,17 +3556,18 @@ in with self; { SGL = derive2 { name="SGL"; version="1.1"; sha256="1wc430jqn3li102zpfmyyavfbab7x7ww9p89clxsndyigrrbjdr7"; depends=[]; }; SGP = derive2 { name="SGP"; version="1.8-0.0"; sha256="02yh6kvc34gn33cbnhc5b86pmir1zbl6s875hangwb3qx7r13dx0"; depends=[Cairo colorspace crayon data_table digest doParallel doRNG equate foreach gridBase gtools iterators jsonlite matrixStats plotly quantreg randomNames RSQLite sn toOrdinal]; }; SGPdata = derive2 { name="SGPdata"; version="20.0-0.0"; sha256="0fxv7nnxiaq6z9wii9x5qiy0vd2z8jw3gcwl5fj9m29ja7j3900g"; depends=[crayon data_table]; }; - SHELF = derive2 { name="SHELF"; version="1.3.0"; sha256="0qhkp1ypbimiq9r8yv95bipbmhm7b38ibbk9nmhdckrr6ymd2w35"; depends=[ggExtra ggplot2 MASS shiny tidyr]; }; + SHELF = derive2 { name="SHELF"; version="1.4.0"; sha256="1lc8f19dvnpv1mg32q3vrg96pwcsapkb30fqis6q58v434v42x89"; depends=[ggExtra ggplot2 gridExtra MASS rmarkdown scales shiny tidyr]; }; SHIP = derive2 { name="SHIP"; version="1.0.2"; sha256="0b83cclibdz1r7sz968nmca4najwgps9wrdlsh4gxrl7fq40k4ln"; depends=[]; }; - SI = derive2 { name="SI"; version="0.1.0"; sha256="11ywmyz4mamk30p4m9qvgmba237s1xvabablh91rwq13089x8nxm"; depends=[]; }; + SI = derive2 { name="SI"; version="0.2.0"; sha256="0i6kpaw5yk39skm77nf56ai25clkparz3l8qx0223jrmdqbf97b7"; depends=[]; }; SIBER = derive2 { name="SIBER"; version="2.1.3"; sha256="14ab9zid0i400kj924m2y5qgp2iibnpllhqw11rlmdf8j9cr7858"; depends=[dplyr ggplot2 hdrcde magrittr mnormt rjags spatstat_utils tidyr viridis]; }; SIBERG = derive2 { name="SIBERG"; version="2.0.2"; sha256="0wfx1dpjd09gb736sm2xhrkba26nwnzn5x575h39n2g33jwqqy2r"; depends=[mclust]; }; SID = derive2 { name="SID"; version="1.0"; sha256="1446zy4rqbw0lpyhnhyd06dzv238dxpdxgmsk34hqv7g3j7q5h1w"; depends=[igraph Matrix pcalg RBGL]; }; - SIDES = derive2 { name="SIDES"; version="1.11"; sha256="1gmhfj44qdklsdklmg8p35lmvlgla8i881i3iaziblslyscbyw9f"; depends=[doParallel foreach MASS memoise multicool nnet survival]; }; + SIDES = derive2 { name="SIDES"; version="1.13"; sha256="10759nx2x3gy6zacn37fpr2dgx8j8ap8ic4infljfk0048f9in8w"; depends=[doParallel foreach MASS memoise multicool nnet survival]; }; SII = derive2 { name="SII"; version="1.0.3"; sha256="1k9mvz6g25qs351c0vx7n5h77kb6k833jrcww14ni59yc9jgvsyg"; depends=[]; }; SILGGM = derive2 { name="SILGGM"; version="1.0.0"; sha256="1lhmisgg2zbfksl7czz0fqag3732gkjc44n615ipxbdi2pvnc7m0"; depends=[glasso MASS Rcpp reshape]; }; SIMMS = derive2 { name="SIMMS"; version="1.1.1"; sha256="1wgqz8zgijv5psz5r5zj9k63ikq5sr1dxqxvh48n2041slj6jdap"; depends=[doParallel foreach glmnet MASS survival xtable]; }; SIN = derive2 { name="SIN"; version="0.6"; sha256="0vq80m3vl8spdnlkwvwy0gk3ziyybqzjp3scnfdcpn942ds7sgg9"; depends=[]; }; + SIRE = derive2 { name="SIRE"; version="1.0.2"; sha256="1y313wmbpp7yiqg6sc280s97z1xp5zlpiddx42zwzwanikxscikx"; depends=[igraph MASS Matrix matrixcalc numDeriv psych stringr systemfit]; }; SIRItoGTFS = derive2 { name="SIRItoGTFS"; version="0.2.4"; sha256="1hyhjwkv26fpplzqrdh41r8j91la5j0jidbwnh2vla6s3wf7jg47"; depends=[data_table dplyr easycsv reshape2 rgdal rgeos sp]; }; SIS = derive2 { name="SIS"; version="0.8-6"; sha256="1749ks5iqlj6lrn0hglifj1iy86dcpqz2pcnf1l798pa05rq8ngd"; depends=[glmnet ncvreg survival]; }; SISIR = derive2 { name="SISIR"; version="0.1"; sha256="08lw9y38j5qq00m2vcxsac97lg14j4w1y6607vw8isrb3qb5db9z"; depends=[doParallel expm foreach glmnet Matrix RSpectra]; }; @@ -3445,6 +3589,7 @@ in with self; { SMNCensReg = derive2 { name="SMNCensReg"; version="3.0"; sha256="06542jacy74mw6ic0i1ml09pn45sll96bya7dqja6bg9yp0m6bvr"; depends=[Matrix PerformanceAnalytics]; }; SMPracticals = derive2 { name="SMPracticals"; version="1.4-2"; sha256="0apmkmsv2fqmxpgq08n9k9dvcknj74s4cpp0myjcd6kibb7g9slq"; depends=[ellipse MASS nlme survival]; }; SMR = derive2 { name="SMR"; version="2.0.1"; sha256="0qy56fmismcjklpf29ic2gi1g8ajdjpxsl0akb9cqzyisyf641ia"; depends=[]; }; + SMUT = derive2 { name="SMUT"; version="1.0"; sha256="1dsmj0h969q9q6qjamr73yfjxbq7hfjmcawra3lynangnc78y1l7"; depends=[MASS Rcpp RcppEigen SKAT]; }; SMVar = derive2 { name="SMVar"; version="1.3.3"; sha256="17wr4lixy3p32gr4jq02d7zsr88yrbddjsvynzdsdrwbxf4mwqhp"; depends=[]; }; SNFtool = derive2 { name="SNFtool"; version="2.3.0"; sha256="1yplcwmy7jhsvz19r82ivpxfqav7q88jcf8d0r2k8ll9iqmi1dbc"; depends=[alluvial ExPosition heatmap_plus]; }; SNPMClust = derive2 { name="SNPMClust"; version="1.3"; sha256="1gad1jfla4qpczh8vpwyss5cckzgpffsyj0d71r8drbspr4i3r90"; depends=[MASS mclust]; }; @@ -3454,7 +3599,6 @@ in with self; { SNSequate = derive2 { name="SNSequate"; version="1.3.1"; sha256="1w6yai79996pgg98skfb63kha8rqjzn751nmxg961rc4id1g8ysn"; depends=[emdbook knitr magic plyr progress statmod]; }; SNscan = derive2 { name="SNscan"; version="1.0"; sha256="1s7dxi7faih0phx5wk2xrrzhvfwicq3h2cg8x2klwbrslin973lz"; depends=[igraph poweRlaw Rmpfr]; }; SOAR = derive2 { name="SOAR"; version="0.99-11"; sha256="1n38gx5sxpkqfkk4y6vpp6g19b8bs5bisni9wn6311s0csizp86m"; depends=[]; }; - SOD = derive2 { name="SOD"; version="1.0"; sha256="0f0rh1qsjzxb3zzr440kvl6fnnj7dvc5apdzs5hpf6xrlfg863pk"; depends=[Rcpp]; }; SODC = derive2 { name="SODC"; version="1.0"; sha256="18s4rcp5dzchvwrzzbfhbs3x91zlg1rymjarxjk5i429mfrn0krx"; depends=[magic MASS ppls psych]; }; SOFIA = derive2 { name="SOFIA"; version="1.0"; sha256="1jlaggxa2nz2r5yb2xmf0dh5wmxfdk6xwn0l3nwsqh82vyxhp7l9"; depends=[png]; }; SOIL = derive2 { name="SOIL"; version="1.1"; sha256="0dvfh84xjzald51kmdb546par2rbjdn3nys9y9w7cvafv2lc5yj9"; depends=[brglm2 glmnet MASS ncvreg]; }; @@ -3470,7 +3614,7 @@ in with self; { SPAr = derive2 { name="SPAr"; version="0.1"; sha256="068jlsvaxx80ih6n86286m2r75cvy6w0m51vpj4gfclhh38py4p4"; depends=[]; }; SPAtest = derive2 { name="SPAtest"; version="3.0.0"; sha256="0pq8mbj05x4l3lvdgayxigviirhx6ghf4w5bkpvg9hggkb79ib9y"; depends=[]; }; SPCALDA = derive2 { name="SPCALDA"; version="1.0"; sha256="1bmp2zz0favmpyp0ap8a2r1mg1nlan7zg5cj75drdnfpqlsn5vgl"; depends=[MASS]; }; - SPCAvRP = derive2 { name="SPCAvRP"; version="0.2"; sha256="1kqx2mf75h491aj6rm923frpj1yl9c1p666cq3f1d7aa1k9byrzi"; depends=[MASS]; }; + SPCAvRP = derive2 { name="SPCAvRP"; version="0.3"; sha256="1j4469ny70xsyaf9qa403yg0n63c1as6mkw7a6ql4h7aa53bz5sz"; depends=[MASS]; }; SPECIES = derive2 { name="SPECIES"; version="1.0"; sha256="0p45llf2wjr467bqr4pbljfank9zz3fm42yl3i0r3jbkxgz0rjf0"; depends=[]; }; SPEDInstabR = derive2 { name="SPEDInstabR"; version="1.6"; sha256="1py7vw1jfn9pf0xj1syyk7xv5593bilmzrb0p3iy85bks8iijlgx"; depends=[]; }; SPEI = derive2 { name="SPEI"; version="1.7"; sha256="0lj7d3bbik7q4di5nqc3a1rn94z2y2v9x45r1jjkvgf03frj96qd"; depends=[ggplot2 lmomco]; }; @@ -3484,22 +3628,22 @@ in with self; { SPREDA = derive2 { name="SPREDA"; version="1.0"; sha256="1dyqsra899fd1nbk1b7vkw8gs455c6pbcvzw84q9iri77186xqhv"; depends=[nlme survival]; }; SPRT = derive2 { name="SPRT"; version="1.0"; sha256="1r4pfqh8k5avi8qgpk5x1cy8lmkn341yvjvd2r7wqwb3mr242r0v"; depends=[]; }; SPSL = derive2 { name="SPSL"; version="0.1-8"; sha256="1jg1nfhz8qml1wwqa4d0w7vkdmbgdy5xlfqx0h2pdw2z8iij3xxc"; depends=[]; }; - SPUTNIK = derive2 { name="SPUTNIK"; version="1.0.2"; sha256="0hf6g3s17ri1qzl1180s4akyhp98lj6zx5ix1z6rh53gk6dvxb5l"; depends=[autothresholdr ggplot2 imager infotheo reshape SDMTools spatstat viridis viridisLite]; }; + SPUTNIK = derive2 { name="SPUTNIK"; version="1.1.1"; sha256="1spzl3dhxf0715xibl9ny2v4xgikd8chwdzb3ari1sj82jx1544p"; depends=[e1071 ggplot2 imager infotheo reshape SDMTools spatstat viridis]; }; SPYvsSPY = derive2 { name="SPYvsSPY"; version="0.1.1"; sha256="1hxc73wwrzqh1r1xr9yd4hy4ma24virg4iv978lfyc9f9n56znp5"; depends=[]; }; SPmlficmcm = derive2 { name="SPmlficmcm"; version="1.4"; sha256="1acs3560a7h6xx286m40abr9b7i5qihn6wni8flj0biahmsszzx6"; depends=[nleqslv]; }; SPreFuGED = derive2 { name="SPreFuGED"; version="1.0"; sha256="1cdamkrr0xpc0l2dypd9lgjidrmalfxs0ms7z3wfmf22a8b3y0d2"; depends=[Biobase boot CMA lattice limma lme4 mvtnorm]; }; - SQB = derive2 { name="SQB"; version="0.2"; sha256="11ccgf6bsnzfmqs92jl1ds09h2352qhjmwb88dvd7qww9admd0ig"; depends=[caret nnet pls rpart]; }; + SQB = derive2 { name="SQB"; version="0.4"; sha256="12ii8xlwd2r77bj76j7l43898ras25z3plhhv106jaklhpcnk23m"; depends=[caret nnet pls rpart]; }; SQDA = derive2 { name="SQDA"; version="1.0"; sha256="0nfimk625wb64010r5r7hzr64jfwgc6rbn13wvrpn0jgayji87h6"; depends=[limma mvtnorm PDSCE]; }; SQN = derive2 { name="SQN"; version="1.0.5"; sha256="0kb8kf6g482zqdp4avwvhs3pqghfny757dbzfl1abaigmvwvx4qj"; depends=[mclust nor1mix]; }; - SQRL = derive2 { name="SQRL"; version="0.4.0"; sha256="0wl4drma9nznqdbgb95wq2g12iy87g4s3h67n8dpxp7alx5lxy7q"; depends=[RODBC]; }; + SQRL = derive2 { name="SQRL"; version="0.5.0"; sha256="19mfr45csr23nw7w3li1iyb6hyf94a7w3xlm1rp8dx2ad0vdhzy2"; depends=[RODBC]; }; SQUAREM = derive2 { name="SQUAREM"; version="2017.10-1"; sha256="10xj26x7qjyvzndnbjl5krr9wabnb9cbrnp3m7xg673g8ddr12cv"; depends=[]; }; SRCS = derive2 { name="SRCS"; version="1.1"; sha256="13zf3cqs53w68f9zc1fkb9ql84rvzn7g1hbykqrbvss8hjaq8x1r"; depends=[]; }; SRRS = derive2 { name="SRRS"; version="0.1.1"; sha256="0jv545a97q4pyl89lmhn3y0jhdzyq033mvx144x8lcgx59s7cyi3"; depends=[gtools tcltk2]; }; - SSBtools = derive2 { name="SSBtools"; version="0.2.1"; sha256="1cqdmvh9gxyx2yciy0j54v84hl8cayifv368ip5y3k6g1cff6488"; depends=[]; }; + SSBtools = derive2 { name="SSBtools"; version="0.3.0"; sha256="14vs51cq34n2i7gwzs4yr53azhl8c1my293q6x7brvy6pflyj9w6"; depends=[Matrix stringr]; }; SSDM = derive2 { name="SSDM"; version="0.2.4"; sha256="1zn0iaav58pjzd6ckm28w16pblkjxacj2s1daj0sk0423dhjkf76"; depends=[dismo e1071 earth gbm gplots mgcv nnet randomForest raster rpart SDMTools shiny shinydashboard shinyFiles sp spThin]; }; - SSDforR = derive2 { name="SSDforR"; version="1.4.18"; sha256="0ffy6gk94q4wlil4jhvc0y2pxim81vza517scly71zwp004381q3"; depends=[MASS psych TSA TTR]; }; + SSDforR = derive2 { name="SSDforR"; version="1.4.21"; sha256="1k73wy1krs4ngh639ajshi1pap13gl7xcwwi2fa0zzng1kyfwp1v"; depends=[MAd MASS metafor psych TSA TTR]; }; SSL = derive2 { name="SSL"; version="0.1"; sha256="0fy6svf8xfni72bpsg8a5wr8ly46srhfixk8866lrcsp8pb6mqcd"; depends=[caret e1071 klaR NetPreProc proxy Rcpp xgboost]; }; - SSLASSO = derive2 { name="SSLASSO"; version="1.1"; sha256="0zkzsdk568y9n9yj160i2vxgl570zvrfagwyafapypq5bz1cyjpi"; depends=[]; }; + SSLASSO = derive2 { name="SSLASSO"; version="1.2-1"; sha256="0x9nbq9lsnq9g47y50z2ymfbj09l2d1lbii2cfjm76nzk3k5lb39"; depends=[]; }; SSM = derive2 { name="SSM"; version="1.0.1"; sha256="1h8yyzh5rn5jay70kyzvwirfndi049a5w28qigrjv5rxd7ml84l7"; depends=[]; }; SSN = derive2 { name="SSN"; version="1.1.13"; sha256="0hk138p1jnlda7d2wxlrf2ipkgliqlip1i5xp67aym979g0b3aaj"; depends=[BH igraph lattice maptools MASS Matrix rgdal rgeos RSQLite sp]; }; SSRA = derive2 { name="SSRA"; version="0.1-0"; sha256="1d0lg2dz8vf1d63366s5apm0ygrsfxivbrsij907r244zj6i1c37"; depends=[shape stringr]; }; @@ -3514,11 +3658,12 @@ in with self; { STEPCAM = derive2 { name="STEPCAM"; version="1.2"; sha256="03crbc7hag8w333j9c7k0q7zy7xmfid4lq773p74r55jmac5xpjf"; depends=[ade4 ape FD geometry gtools MASS vcd]; }; STI = derive2 { name="STI"; version="0.1"; sha256="1p408y9w2h4ljaq0bsw7vc1xghczjprf558cyg6994m0nv5fh4c4"; depends=[fitdistrplus zoo]; }; STMedianPolish = derive2 { name="STMedianPolish"; version="0.2"; sha256="0jzgcfhm09cccg2nwbvrmnkah1psbnmg26rc2n7lz26n4b20p3l2"; depends=[gstat maptools nabor reshape2 sp spacetime zoo]; }; - STPGA = derive2 { name="STPGA"; version="4.0"; sha256="198h2wzhv5lnyqypn7s5lilywby2pq3zdx8vk4qd72bybfwwli2c"; depends=[]; }; + STMotif = derive2 { name="STMotif"; version="1.0.0"; sha256="13qcayqvf60akk6y3gyhll1cz5mdllfn848i2241pz9appdgdsvy"; depends=[ggplot2 reshape2 scales shiny]; }; + STPGA = derive2 { name="STPGA"; version="5.2"; sha256="1pllwr6x9nagf7l6w3m021bkhhp8l0l5zlc1jqrvj0irv6r2r7vp"; depends=[AlgDesign emoa scales scatterplot3d]; }; STRMPS = derive2 { name="STRMPS"; version="0.5.8"; sha256="0vlmhrna0laqzjpbg4sgnscrli3cly2lc5d69n6iqfl213zsfz78"; depends=[Biostrings dplyr IRanges purrr ShortRead stringr tibble tidyr]; }; STV = derive2 { name="STV"; version="1.0.0"; sha256="034d9qnvgmk97ah7r9w2hvnw39f7mxs2ml6y8dad94p8phl52gfw"; depends=[]; }; SUE = derive2 { name="SUE"; version="1.0"; sha256="0akv724s84v2zixvwywj1ydfnfvcjnaabv6gm0601nsrh6ij1mi6"; depends=[]; }; - SUMMER = derive2 { name="SUMMER"; version="0.2.0"; sha256="019yfw76jihk886990pivq1mzbbjbwpn7b4bvmacgbb9v6qrsl3b"; depends=[classInt ggplot2 maptools Matrix pixmap RColorBrewer reshape2 rgeos sp spdep survey survival]; }; + SUMMER = derive2 { name="SUMMER"; version="0.2.1"; sha256="11qm0spisx8f733d7gjyq8r82zvpv7mjpzxz5xfigyhyzrds18d2"; depends=[ggplot2 maptools Matrix reshape2 spdep survey survival]; }; SVMMaj = derive2 { name="SVMMaj"; version="0.2-8"; sha256="13d9v1l85md1v6qyfrdc3l36yanw5canskngjr1sh0hmyla182bz"; depends=[dplyr ggplot2 gridExtra kernlab reshape2 scales]; }; SVMMatch = derive2 { name="SVMMatch"; version="1.1"; sha256="1ykwrhlid4hs466xh3kv6y2qdhgk0jiglg0l3zwk5qlni6p26zc9"; depends=[Rcpp RcppArmadillo]; }; SWATmodel = derive2 { name="SWATmodel"; version="0.5.9"; sha256="1i48g9nbjfn30ppwyzyz3k181nscv4wx773l8mzfdwhx0nlv4kyj"; depends=[EcoHydRology]; }; @@ -3531,8 +3676,9 @@ in with self; { SampleSize4ClinicalTrials = derive2 { name="SampleSize4ClinicalTrials"; version="0.1.0"; sha256="0wx1rfyf753wppjwwb3l1zpmg4b2mwnwjcw45yzav54yxaszy2v3"; depends=[]; }; SampleSizeMeans = derive2 { name="SampleSizeMeans"; version="1.1"; sha256="1wbc46n8b8wbcxl21blbzs5728dr8r0l8d3jpzbha8pcav0xrh1m"; depends=[]; }; SampleSizeProportions = derive2 { name="SampleSizeProportions"; version="1.0"; sha256="0mvkvx3nni0l8ys68sq3h2zlbjvksdcdzxqlf03k0ca5bbcmdf9l"; depends=[]; }; - SamplerCompare = derive2 { name="SamplerCompare"; version="1.2.9"; sha256="1fl9wgbfnkn2ai4swspl88crqpgd9b43hj8rkqkky4b49b8f6bj8"; depends=[mvtnorm]; }; - SamplingStrata = derive2 { name="SamplingStrata"; version="1.2"; sha256="1qz0pcmp8a9wbq8qx1j2bv1j4makx97v9n4aiklagnmszg2gvggy"; depends=[memoise]; }; + SamplerCompare = derive2 { name="SamplerCompare"; version="1.3.0"; sha256="1lqnkgbg1naa3crk3rakrf37vvxj6mbilbpxrv0k5iifdmh0b7k1"; depends=[mvtnorm]; }; + SamplingBigData = derive2 { name="SamplingBigData"; version="1.0.0"; sha256="0khrh7vfqqzpfp16x0ic5ml854wr2fj28cx95s6c0pz91hzlxkns"; depends=[]; }; + SamplingStrata = derive2 { name="SamplingStrata"; version="1.3"; sha256="0x4qppi3pbxmlcpcp62yxjia3nk3iy2f1rl6wqm0jsjp4rbn2mn9"; depends=[doParallel memoise pbapply]; }; SanFranBeachWater = derive2 { name="SanFranBeachWater"; version="0.1.0"; sha256="18w2q3hzcrbmagnjyrn1ikwiyjh723mjb2vy0d8p1a6za0460p9w"; depends=[dplyr lubridate magrittr readr rvest tibble xml2]; }; SanzCircos = derive2 { name="SanzCircos"; version="0.1.0"; sha256="0vw41qldp1gsj4mx2hdd5jfhx9r8pv62i8gvs86p6bvfzy2l1lq4"; depends=[dplyr pbapply purrr randomcoloR readr tibble tidyr]; }; Scale = derive2 { name="Scale"; version="1.0.4"; sha256="1fa3840kji34qpbw6mxfavk8wq0vq0vx2w6ya71idbkxnvwc3y06"; depends=[Hmisc MASS psych]; }; @@ -3558,39 +3704,37 @@ in with self; { SeleMix = derive2 { name="SeleMix"; version="1.0.1"; sha256="1qzy59wbjh8llm66l70xi0p3lv94iawh2h5vwa9sqy2ra5vmpaxk"; depends=[mvtnorm]; }; Select = derive2 { name="Select"; version="1.4"; sha256="1qx4wwxxwjq31vf645xvwb0y2z5h4v6ca8fcrfpaj5kc33f333v2"; depends=[ade4 FD lattice latticeExtra Rsolnp]; }; SelvarMix = derive2 { name="SelvarMix"; version="1.2.1"; sha256="02d16ffw5syq0d3yiim9jgrjlz99n956zxp23idpsmq6lb2whq66"; depends=[glasso Rcpp RcppArmadillo Rmixmod]; }; - SemNetCleaner = derive2 { name="SemNetCleaner"; version="0.1.1"; sha256="0ry6lv33iynh1dy31zag5z36wr1limi8d7bbcjykcbgsbwcbazfj"; depends=[doParallel dplyr foreach ggplot2 magrittr NetworkToolbox plyr purrr qdap RColorBrewer tm]; }; + SemNetCleaner = derive2 { name="SemNetCleaner"; version="0.9.9"; sha256="1pbp1h3kqgrdwr28psbrnd8i67rbff8hyldry46511zjmc8c7zaq"; depends=[qdap]; }; Semblance = derive2 { name="Semblance"; version="0.1.0"; sha256="11mpqfpv7i5nqyn9s63bfphj35sh4gx4hjy0gc22sfqn0lmvl132"; depends=[fields]; }; SemiCompRisks = derive2 { name="SemiCompRisks"; version="3.1"; sha256="0m0primbkpjw4pmmabdgvp5l21aqfifnryga1rp2ng9cm5ncxxqg"; depends=[Formula MASS survival]; }; SemiMarkov = derive2 { name="SemiMarkov"; version="1.4.4"; sha256="1dj8gj04yfn0lj83b90b4p0ilgphmzcalz95xw7xgvivww8yj1dg"; depends=[MASS numDeriv Rsolnp]; }; SemiPar = derive2 { name="SemiPar"; version="1.0-4.2"; sha256="0pa3drpvclkw81ji5m1h5arj5c2rh03dnlff97cnnr1v5kvg1i4w"; depends=[cluster MASS nlme]; }; SemiParSampleSel = derive2 { name="SemiParSampleSel"; version="1.5"; sha256="0apbg8sddz2ab9170wvf7p6cgawvp4w13r97r5q7p3hx2hylb8sw"; depends=[CDVine copula gamlss_dist magic Matrix matrixStats mgcv mvtnorm trust VGAM]; }; SenSrivastava = derive2 { name="SenSrivastava"; version="2015.6.25"; sha256="0r4p6wafnfww07kq19lfcs96ncfi0qrl8n9ncp441ri9ajwj54qk"; depends=[]; }; - SensMap = derive2 { name="SensMap"; version="0.6"; sha256="0j52aplvdlwwfswyrij0vv7zsdr015cn5931c6631rlps94gka0w"; depends=[doBy factoextra FactoMineR fields ggdendro ggplot2 glmulti lattice MCMCpack mgcv plotly shiny]; }; SensMixed = derive2 { name="SensMixed"; version="2.1-0"; sha256="0ykg94amnm9clf8d3naap8fmv9qqc6j1q52wnb83zk7ry44dp7dh"; depends=[doBy ggplot2 Hmisc lme4 MASS plyr reshape2 shiny shinyBS xtable]; }; SensitivityCaseControl = derive2 { name="SensitivityCaseControl"; version="2.1"; sha256="00jqzqx7g0av9lw13is723gph486gb8ga0wgcmmzpmb24s5nya9z"; depends=[]; }; SensoMineR = derive2 { name="SensoMineR"; version="1.23"; sha256="0a1s2wrb86a0y2faxj5ax8fa6vfcclgg7bcff4j7jb40ilxnxhn4"; depends=[AlgDesign cluster FactoMineR ggplot2 gtools KernSmooth reshape2]; }; - SensusR = derive2 { name="SensusR"; version="2.2.0"; sha256="0ahgy6mvlxfdavdarmfmb1ld1pykhbrjgg8mdh5q71b3a75vbp47"; depends=[ggmap ggplot2 jsonlite lubridate openssl plyr R_utils]; }; + SensusR = derive2 { name="SensusR"; version="2.3.0"; sha256="1gzww80p11zqs90psfx3yl7ncdkq3l55bcs4dxzikrnf5maqa193"; depends=[ggmap ggplot2 jsonlite lubridate openssl plyr R_utils]; }; SentimentAnalysis = derive2 { name="SentimentAnalysis"; version="1.3-2"; sha256="18vycj9vpb32610sn321sbwdnjldyjm9idjw9spggdzj7gsiwwk3"; depends=[ggplot2 glmnet mgcv moments ngramrr qdapDictionaries SnowballC spikeslab stringdist tm XML]; }; SeqAlloc = derive2 { name="SeqAlloc"; version="1.0"; sha256="04rhr3gb2p9i35a3x4k8m0lv42ncfqlhx6sf3bq8yihppwrag8x3"; depends=[]; }; SeqFeatR = derive2 { name="SeqFeatR"; version="0.2.7"; sha256="0qg1zpamcbjia2q8900yzihahb0y7kc48smxipncf8bb68256pyv"; depends=[ape Biostrings calibrate coda ggplot2 phangorn plotrix plyr qvalue R2jags scales tcltk2 widgetTools]; }; SeqGrapheR = derive2 { name="SeqGrapheR"; version="0.4.8.5"; sha256="041hlf64zbndz76r076pmym4dw4xl3fahryvpvjspw0sdlhmfm8c"; depends=[Biostrings cairoDevice gWidgets gWidgetsRGtk2 igraph rggobi]; }; SeqKat = derive2 { name="SeqKat"; version="0.0.6"; sha256="0idxyn84rqsg26y6ml218g037qxrx9755ikasyn212qacc36in39"; depends=[doParallel foreach Rcpp]; }; SeqMADE = derive2 { name="SeqMADE"; version="1.0"; sha256="0nf1xjhk0kpmmzgcxycg3ccxvwq6gydjq7xq6n9m7k7v35v9v3qf"; depends=[MASS]; }; - SequenceAnalysis = derive2 { name="SequenceAnalysis"; version="1.3"; sha256="0jrpq5ryw7rwkv99w0a5p3r0vj8nbzj6adlcsr84d9ffgxafmhif"; depends=[XML]; }; Sequential = derive2 { name="Sequential"; version="2.3.2"; sha256="01zvgvdj57js08krskahk1ng3wkv9iblmirslgrmllf4q18zwsdr"; depends=[]; }; SequentialDesign = derive2 { name="SequentialDesign"; version="1.0"; sha256="1gi37pixwbpy7358id1c75rckr352hs8vjs8sk8qgsr97pkm5xdq"; depends=[Sequential]; }; SetMethods = derive2 { name="SetMethods"; version="2.3.1"; sha256="0a8d476slmq1dpimmr1l97k2icjwr907rw463c9dqba82a3p8k7g"; depends=[betareg fmsb lattice QCA]; }; SetRank = derive2 { name="SetRank"; version="1.1.0"; sha256="0p7vwsw05s5hfw1mfh3fbm9nfzsymnxzrdjin7k21dx7asb618wy"; depends=[data_table igraph XML]; }; SetTest = derive2 { name="SetTest"; version="0.2.0"; sha256="08wc6cbnannmwkncqhpcw6l0y7c1v7z3awk5j7fd853nszfmpbk0"; depends=[]; }; - Seurat = derive2 { name="Seurat"; version="2.3.3"; sha256="0hfv4balzjjir8gdhrzb92ap36k6imq3igvb1nn0rhb0fq7959cr"; depends=[ape cluster cowplot diffusionMap doSNOW dplyr dtw fitdistrplus foreach fpc ggplot2 ggridges gplots hdf5r Hmisc ica igraph irlba lars lmtest MASS Matrix metap mixtools pbapply plotly png RANN RColorBrewer Rcpp RcppEigen RcppProgress reshape2 reticulate ROCR Rtsne SDMTools tidyr tsne]; }; + Seurat = derive2 { name="Seurat"; version="2.3.4"; sha256="0l8bv4i9nzz26mirnva10mq6pimibj24vk7vpvfypgn7xk4942hd"; depends=[ape cluster cowplot doSNOW dplyr dtw fitdistrplus foreach fpc ggplot2 ggridges gplots hdf5r Hmisc httr ica igraph irlba lars lmtest MASS Matrix metap mixtools pbapply plotly png RANN RColorBrewer Rcpp RcppEigen RcppProgress reshape2 reticulate ROCR Rtsne SDMTools tidyr tsne]; }; ShapeChange = derive2 { name="ShapeChange"; version="1.4"; sha256="1ch7avx8mxjk8vrp17inaihmbsv968wflyk1n4fbjvacbl24vn2b"; depends=[coneproj quadprog]; }; ShapePattern = derive2 { name="ShapePattern"; version="1.0.1"; sha256="18jzs0sq21qhldm86mgx7yb9kl473vv1aljl9hm4560xy5pd5fnb"; depends=[rgdal rgeos sp]; }; ShapeSelectForest = derive2 { name="ShapeSelectForest"; version="1.3"; sha256="1vvfl1ldrn0l9w38hx0hhszvj5a2dpmfl6ljzw7f0ji181lrx96m"; depends=[coneproj raster rgdal]; }; - SharpeR = derive2 { name="SharpeR"; version="1.1.0"; sha256="0qhvpwv81jznqfzm7xysm051ckv8ilq7zhsysxc7wripnlj01c4m"; depends=[matrixcalc sadists]; }; + SharpeR = derive2 { name="SharpeR"; version="1.2.0"; sha256="1gw8wwdqbra4bccbcamqn2j7d853rga1vcvk1p6naih6vbnfqn2s"; depends=[matrixcalc sadists]; }; ShinyImage = derive2 { name="ShinyImage"; version="0.1.0"; sha256="0nhsaq6i9lr8gqpdkahw3qr0c0cb0qwc0nqpk1ism21l6zg6ahc9"; depends=[EBImage R6 shiny shinyjs]; }; - ShinyItemAnalysis = derive2 { name="ShinyItemAnalysis"; version="1.2.7"; sha256="0l350q6sy63m09fiamphhkc3hhlncqjn5r2w59gv2hwqnjhwhp2c"; depends=[corrplot CTT data_table deltaPlotR difNLR difR DT ggplot2 gridExtra knitr latticeExtra ltm mirt moments msm nnet plotly psych psychometric reshape2 rmarkdown shiny shinyBS shinyjs stringr WrightMap xtable]; }; + ShinyItemAnalysis = derive2 { name="ShinyItemAnalysis"; version="1.2.8"; sha256="1ly2jzaziy0jipng3ahk1vm4lfrwqnjpmgrbrzm2k6rgpxrwjjn4"; depends=[corrplot cowplot CTT data_table deltaPlotR difNLR difR DT ggplot2 gridExtra knitr latticeExtra ltm mirt moments msm nnet plotly psych psychometric reshape2 rmarkdown shiny shinyBS shinydashboard shinyjs stringr xtable]; }; ShinyTester = derive2 { name="ShinyTester"; version="0.1.0"; sha256="0wm4rl2p8ggw6v2chk9b6ygh5y8p8cwzbyra0nr0qr2ka97didp8"; depends=[dplyr purrr readr stringr tidyr visNetwork]; }; - ShortForm = derive2 { name="ShortForm"; version="0.4.1"; sha256="0c2q3lhcyfn3w4iqknid9gav11nlycy9lma5m49vixksv7rf5kyw"; depends=[ggplot2 lavaan stringr tidyr]; }; + ShortForm = derive2 { name="ShortForm"; version="0.4.2"; sha256="0lfnafkkwfhqv984mrbd13inck1sdzn7rq1qdklfjwks89dx9ql9"; depends=[ggplot2 lavaan stringr tidyr]; }; ShrinkCovMat = derive2 { name="ShrinkCovMat"; version="1.2.0"; sha256="1ybd8vm69y50lj2mkmcdyplxb689xfg4spbl129v8hlvhw69mzmy"; depends=[]; }; SiER = derive2 { name="SiER"; version="0.1.0"; sha256="1ng6vnh30z6z1nvclsdzc9gdbrsrb2kqdqvs6fwm0j1zqlk12x0y"; depends=[]; }; SiMRiv = derive2 { name="SiMRiv"; version="1.0.3"; sha256="1kzvbzmqcxs0sh23nmjd39zkg68kbnc5djpbjhqhn55qjdfx5776"; depends=[mco raster rgdal sp]; }; @@ -3599,20 +3743,20 @@ in with self; { SigTree = derive2 { name="SigTree"; version="1.10.6"; sha256="18gh7azjr979ijc2y4yyskj24ay697rw3j7znc5p4a63s4vpxr9w"; depends=[ape MASS phyext2 phylobase phyloseq RColorBrewer vegan]; }; SightabilityModel = derive2 { name="SightabilityModel"; version="1.3"; sha256="0rgv5735y07yyv5y9c3flzha97ykn34ysmzy6as1z94hqfr4w746"; depends=[]; }; SignifReg = derive2 { name="SignifReg"; version="1.0"; sha256="1360892wy0qc6dch3753s4a17l3pcijjmxd34zqvzl9534arlsxd"; depends=[]; }; - Sim_DiffProc = derive2 { name="Sim.DiffProc"; version="4.0"; sha256="04p6q3g0afyky2ljxf471axik6vwj9l4dv4r487jrykrlhnjrm4z"; depends=[Deriv MASS rgl scatterplot3d]; }; + Sim_DiffProc = derive2 { name="Sim.DiffProc"; version="4.2"; sha256="0166m9z2iir7qmfmjd3q7sbkdp0znlynqd2d3smb3yykcf312jbs"; depends=[Deriv MASS]; }; Sim_PLFN = derive2 { name="Sim.PLFN"; version="1.0"; sha256="1jmsydhpfv2z9cr99hfy8cairhkkxpwk4wnz1adixwxazkn7qfah"; depends=[DISTRIB FuzzyNumbers]; }; SimComp = derive2 { name="SimComp"; version="3.2"; sha256="04rmpxasaa888p6f0rhhpvpqc39fppdkcwbq5sxcslx7bwc9w9z8"; depends=[mratios multcomp mvtnorm]; }; SimCop = derive2 { name="SimCop"; version="0.7.0"; sha256="1yrdy77a9h14v92c63ng8phi2ig73wy4xjjdb75322grc0bd3jq6"; depends=[quadprog]; }; - SimCorMultRes = derive2 { name="SimCorMultRes"; version="1.5.0"; sha256="10afb3k4rvsmgfx6m1csb0pvnjba1d896llfh3ksmjzxglmvslgw"; depends=[evd]; }; + SimCorMultRes = derive2 { name="SimCorMultRes"; version="1.6.0"; sha256="0x0wcc3nqw57xs7jiwc8bzmcwnb69dvpfp7anhx6bx607rcbxfpi"; depends=[evd]; }; SimCorrMix = derive2 { name="SimCorrMix"; version="0.1.1"; sha256="1mx8xkg1nbh4x4xr6m672zyg00s3lky2sy5mz7dfkw40vz2bwi53"; depends=[BB ggplot2 MASS Matrix mvtnorm nleqslv SimMultiCorrData triangle VGAM]; }; - SimDesign = derive2 { name="SimDesign"; version="1.10.1"; sha256="1g7nvzvmhkisl5bibigrsiv9s9xpigyib01vf05dhyc97f1vsg18"; depends=[foreach pbapply plyr]; }; + SimDesign = derive2 { name="SimDesign"; version="1.11"; sha256="0ifn5ma8rh42d75cx2qmv6fbqrw8f6h7kaa1l04648xnplcx7bcz"; depends=[foreach pbapply plyr]; }; SimEUCartelLaw = derive2 { name="SimEUCartelLaw"; version="1.0.1"; sha256="1wg9sayk55mp3f2qykvfk0cbqh050vh0n1fhpq4fmlxqll87aml9"; depends=[plot3D plot3Drgl rgl]; }; SimHaz = derive2 { name="SimHaz"; version="0.1"; sha256="04q4xyc1ki1zr3grm3khfg0kbykjy3j9qpg332l7pxp4j3wa3aw3"; depends=[survival]; }; - SimInf = derive2 { name="SimInf"; version="6.0.0"; sha256="1bbmyqh367g4c6a2mnd78y08svaqyr96sj61wg1zn3n06892ilpg"; depends=[Matrix]; }; + SimInf = derive2 { name="SimInf"; version="6.1.0"; sha256="1y9vk71k7rw7vk91nb25rf1vgnf6cqxw7b9lklrs41x6lk9ar0ps"; depends=[Matrix]; }; SimMultiCorrData = derive2 { name="SimMultiCorrData"; version="0.2.2"; sha256="0brszbqxf40y65xp96c5hp7hhvz3gv0xlg93r5ik8qdh0bn0y1sw"; depends=[BB GenOrd ggplot2 Matrix nleqslv psych triangle VGAM]; }; - SimPhe = derive2 { name="SimPhe"; version="0.1.1"; sha256="00qqqsf7na5c9nslnfpbyr2ysf7d7bi6vnpfiy761nhg8vgf2vjv"; depends=[]; }; + SimPhe = derive2 { name="SimPhe"; version="0.2.0"; sha256="01kzypahw41jk8s2c92h0k9w32yaicis07wb6k8qlqcmv0zj8xry"; depends=[]; }; SimRAD = derive2 { name="SimRAD"; version="0.96"; sha256="0ivvd3k04v1akbblxcjhlyc315z3ig7wjs0g3b37lvlfp54ppbrg"; depends=[Biostrings ShortRead zlibbioc]; }; - SimRVPedigree = derive2 { name="SimRVPedigree"; version="0.1.0"; sha256="1krdz4gxnqxj3wabc5hn7ayfqdfmpgg66zj09b3jnngcdaxkjlwb"; depends=[dplyr kinship2]; }; + SimRVPedigree = derive2 { name="SimRVPedigree"; version="0.3.0"; sha256="1ppms2cirdhm8lsfl74mfc1f9zwc7lin6r5xs649czqlj63yzk4i"; depends=[dplyr kinship2]; }; SimReg = derive2 { name="SimReg"; version="3.0"; sha256="188q399xcrvjw7y7lf3hfbb7x0m0hc4zaf9i1w2c4xzswmvljd8r"; depends=[ontologyIndex ontologyPlot ontologySimilarity Rcpp]; }; SimRepeat = derive2 { name="SimRepeat"; version="0.1.0"; sha256="1vq82wlnas0jkl8hlj7dnnbn4y1a56lmszs4w7wya7acri92gkqm"; depends=[BB ggplot2 MASS Matrix nleqslv SimCorrMix SimMultiCorrData triangle VGAM]; }; SimSCRPiecewise = derive2 { name="SimSCRPiecewise"; version="0.1.1"; sha256="0mhlx9m5db8a40wf275qh59345676m8bpjjmyx1v22f6m9p3b2n4"; depends=[]; }; @@ -3627,6 +3771,8 @@ in with self; { Simpsons = derive2 { name="Simpsons"; version="0.1.0"; sha256="1pm6wga1yxc35zgz72plzq23d3l4bbzfdvhszdxmkn1pkk64h8ms"; depends=[mclust]; }; SimuChemPC = derive2 { name="SimuChemPC"; version="1.3"; sha256="06sxknaykikcgbw7qbbw1risg0sbaisb68vhfd7cl6sg0327dznk"; depends=[rcdk]; }; SinIW = derive2 { name="SinIW"; version="0.2"; sha256="1z7rcjy0i09a9hjpjj1x8i46lv042l20lvb6b0pnsky2sx3v78pd"; depends=[fdrtool pracma]; }; + SingleCaseES = derive2 { name="SingleCaseES"; version="0.4.0"; sha256="0n2wybp06jx36095aw6073rdr2x1ahrnar28sqla2l2jd28ml72x"; depends=[dplyr magrittr purrr rlang tidyr tidyselect]; }; + SitesInterest = derive2 { name="SitesInterest"; version="1.0"; sha256="06l6i6jnzwj683cvd9a9dg4nlb1wy1v3wb561y97a25bikm3mfy6"; depends=[plotrix]; }; SixSigma = derive2 { name="SixSigma"; version="0.9-52"; sha256="07s4an2az2pgqhq9c08jrf6b95nrs1b3r1092d53n1ps8wbdmbln"; depends=[e1071 ggplot2 lattice nortest qcc reshape2 scales testthat xtable]; }; SizeEstimation = derive2 { name="SizeEstimation"; version="1.1.1"; sha256="1rz57y76hzp880511kzm7nhxf201n0dr7ccip6slrjz784dl7s27"; depends=[MCMCpack msm]; }; SkewHyperbolic = derive2 { name="SkewHyperbolic"; version="0.3-2"; sha256="10vilra5z884xinqkvk7ryi4nsq5zxlyn5qh23lsajba3b3qwhaw"; depends=[DistributionUtils GeneralizedHyperbolic RUnit]; }; @@ -3635,15 +3781,16 @@ in with self; { SkyWatchr = derive2 { name="SkyWatchr"; version="0.8-2"; sha256="0if44d79j2hlxdccn3jd7lrfbhrr09rfhfgds132syxprwkcb2mr"; depends=[htmlTable httr sp]; }; Sleuth2 = derive2 { name="Sleuth2"; version="2.0-4"; sha256="18mh1svmb96hw3rjmgxlwzs7kdcvjkxf4zm8k4w0sxz94ks062i7"; depends=[]; }; Sleuth3 = derive2 { name="Sleuth3"; version="1.0-2"; sha256="0b4g7j8a204wyvh0q9n1l4zrl9rk7ibyfijd49mjjdyg9zz4kbna"; depends=[]; }; - SmartEDA = derive2 { name="SmartEDA"; version="0.2.0"; sha256="0k89nvq074c2skjysw0n2cr410ki8f2p2fvzmwy779sgkbabc497"; depends=[data_table ggplot2 gridExtra ISLR rmarkdown scales stringi]; }; + SmallCountRounding = derive2 { name="SmallCountRounding"; version="0.2"; sha256="1xfx0cqrl7yz0a1alxk00ii2q63dawnlkg1s734sji6l6c0dvchy"; depends=[Matrix SSBtools]; }; + SmartEDA = derive2 { name="SmartEDA"; version="0.3.0"; sha256="0adx637nmajmjl9j1rbdmx3gl5v6mgd2m3jdxx3wa4z12pjbrdac"; depends=[data_table GGally ggplot2 gridExtra ISLR rmarkdown sampling scales stringi]; }; SmartSVA = derive2 { name="SmartSVA"; version="0.1.3"; sha256="10a8s2znsg8ywqkq9fsxiyqfsprrx33pqissazp2vmabs11mg4np"; depends=[isva Rcpp RcppEigen RSpectra sva]; }; SmartSifter = derive2 { name="SmartSifter"; version="0.1.0"; sha256="16rzma87k27qg6qy39mzywdj8pzkp7r9q7bpqyikazp3fk2nmfri"; depends=[mvtnorm rootSolve]; }; SmarterPoland = derive2 { name="SmarterPoland"; version="1.7"; sha256="03vs6hcd96va9kfhl2yq77alnm33j1dxy79kgrx17hlijsy65qqv"; depends=[ggplot2 htmltools httr jsonlite rjson]; }; Smisc = derive2 { name="Smisc"; version="0.3.9"; sha256="12chfjjg588a55q3yg0i507vl68hhk7zzprj849smq9azaxidn4k"; depends=[doParallel plyr]; }; SmithWilsonYieldCurve = derive2 { name="SmithWilsonYieldCurve"; version="1.0.1"; sha256="0qvhd1dn2wm9gzyp6k7iq057xqpkngkb4cfmvmjqmf0vhysp371w"; depends=[]; }; SmoothHazard = derive2 { name="SmoothHazard"; version="1.4.1"; sha256="147wjxgxnijpmixrfyl8kd4scz2w1xb8dcwvpr60zg32nv22g17r"; depends=[lava mvtnorm prodlim]; }; - SmoothWin = derive2 { name="SmoothWin"; version="1.0.0"; sha256="19yd3gnanv8q8ab0x8ds61rznm5w71dri0liknylikiqgbqwxrcn"; depends=[msgps]; }; - SnakeCharmR = derive2 { name="SnakeCharmR"; version="1.0.7"; sha256="1i8g0p51mp0j46434zzhmijwwk1v6my7rdw8j41ac3b4as3g0c73"; depends=[jsonlite Rcpp stringr]; }; + SmoothWin = derive2 { name="SmoothWin"; version="2.0.0"; sha256="1mkmrh9f08sgvx4zvca2q09lrwvy24bcgi72bhy1dzdc4fbpg2s5"; depends=[nlme]; }; + SnakeCharmR = derive2 { name="SnakeCharmR"; version="1.0.7.1"; sha256="12kzjrxjrgph95m949z6ri97nn97gh6avzqibw1jn76rsnjrhi6r"; depends=[jsonlite Rcpp stringr]; }; SnakesAndLaddersAnalysis = derive2 { name="SnakesAndLaddersAnalysis"; version="2.1.0"; sha256="0h3664h6d32q201qfyv9y2gg4fhg3azdpwpmx4qfbc10hsc1ghl9"; depends=[]; }; SnowballC = derive2 { name="SnowballC"; version="0.5.1"; sha256="0kbg33hy6m2hv9jspyx6naqmk2q6h2zmvvczjmkwqvlhzlj0c5s4"; depends=[]; }; SoDA = derive2 { name="SoDA"; version="1.0-6"; sha256="0sh2dan4ga2k14rirnkvgzsvbksx1k4ika5gkf5cy247rjkqnpj0"; depends=[]; }; @@ -3655,25 +3802,27 @@ in with self; { SoftClustering = derive2 { name="SoftClustering"; version="1.1502"; sha256="1pgg9mjpfw55m3ny726vx5wl8gwsdkrxv8xzgmy3aqdlwzhh4bwz"; depends=[]; }; SoilHyP = derive2 { name="SoilHyP"; version="0.1.1"; sha256="10lwfmhiavfyzypdb2rpc0rjsphy84vzg8mrdkncircss45cbvyp"; depends=[]; }; SoilR = derive2 { name="SoilR"; version="1.1-23"; sha256="1cryypgnbck5hvkc2izrd8r10q2b97f2p1s46x4dk8p099gck5wg"; depends=[deSolve RUnit]; }; - SolveLS = derive2 { name="SolveLS"; version="1.0"; sha256="0yb2sx3wjhccmkq8p3jj5pp8dgsdfvv4hr88km5yajl950wkbizp"; depends=[Matrix Rcpp RcppArmadillo Rdpack]; }; SorptionAnalysis = derive2 { name="SorptionAnalysis"; version="0.1.0"; sha256="0drns1ajcga5z56hcgjxld1riwjn7vli8k1ma1xqifpy1qwy7ci6"; depends=[]; }; SortableHTMLTables = derive2 { name="SortableHTMLTables"; version="0.1-3"; sha256="1jgrqsm0cj8qlk0s4qn3b83w96mgpp5gmhgcg9q2glc72v8c4ljh"; depends=[brew testthat]; }; SoundexBR = derive2 { name="SoundexBR"; version="1.2"; sha256="0chc332v3wcz30v70yvdxhvcfdmvf4fj193cn00gl899xfxal89p"; depends=[]; }; SourceSet = derive2 { name="SourceSet"; version="0.1.1"; sha256="1326p28mngvi77b98n62cg6rln1qscyxz0616h7apc23ppdl7ybz"; depends=[graph gRbase gtools igraph plyr progress reshape2 scales]; }; - SoyNAM = derive2 { name="SoyNAM"; version="1.4"; sha256="0b48nm3xgvzws9222fmq07chqx4yllz4qjgzxg156s0waxfrjjfi"; depends=[lme4 NAM reshape2]; }; + SoyNAM = derive2 { name="SoyNAM"; version="1.5"; sha256="12qji7bdj0frf6ngwg1wybb29yxpv6cbyhiq2gayafdl48sm8his"; depends=[lme4 NAM reshape2]; }; SpATS = derive2 { name="SpATS"; version="1.0-8"; sha256="0j7yllnw9r8zhlh6jpkp5nsmzj0z3rzq0w6rkc36vp88a0giv15n"; depends=[data_table fields plot3Drgl spam]; }; + SpNMF = derive2 { name="SpNMF"; version="0.1.1"; sha256="1xybxx47i3ww5d7chwl38xc48fbsclgyxcki8h85c6dkm49dxy8i"; depends=[NMF]; }; + SpNetPrep = derive2 { name="SpNetPrep"; version="1.1"; sha256="1y3j7mwjxv69lrgqvi8kxvhlmdyr8v7gbg17741008xb32kgma8h"; depends=[leaflet maptools prodlim raster rgdal shiny shinythemes sp spatstat]; }; SpaCCr = derive2 { name="SpaCCr"; version="0.1.0"; sha256="0qm1fr6nnax3i1i77fi73x1z8db557avh6kivs0nskb1dfj8ri4m"; depends=[abind dplyr ggplot2 Rcpp RcppArmadillo tidyr]; }; SpaDES = derive2 { name="SpaDES"; version="2.0.2"; sha256="14l6rhaid4022c9gza6iy7kb6zr1844v16kn3hlgynf3zqv0mkr4"; depends=[quickPlot reproducible SpaDES_addins SpaDES_core SpaDES_tools]; }; SpaDES_addins = derive2 { name="SpaDES.addins"; version="0.1.1"; sha256="0sipgq00lacy7yk81crr8h7xfm4vs4h66w6rqsll8i7di19g13cj"; depends=[devtools magrittr miniUI rstudioapi shiny SpaDES_core stringi]; }; - SpaDES_core = derive2 { name="SpaDES.core"; version="0.1.1"; sha256="12w2yr4q440n68p4gcj82h7gzjd240khfxjwxpngfbhbgp7rmv4b"; depends=[crayon data_table DEoptim DiagrammeR digest dplyr fastdigest fpCompare httr igraph lubridate quickPlot R_utils raster RCurl reproducible sp stringi]; }; - SpaDES_tools = derive2 { name="SpaDES.tools"; version="0.2.0"; sha256="1xqydiswjg8dn57d0lmfll1ix6ca7w969swpyhwrqkh7x17q9bvg"; depends=[bit checkmate CircStats data_table fastmatch ff ffbase fpCompare magrittr quickPlot RandomFields raster Rcpp reproducible sp velox]; }; + SpaDES_core = derive2 { name="SpaDES.core"; version="0.2.2"; sha256="17p4fvyax5zxvw1h79n7ybx5vhq1gawyk0dib3y055kr1vv95h0s"; depends=[codetools crayon data_table DEoptim DiagrammeR dplyr fastdigest fpCompare googledrive httr igraph lubridate quickPlot R_utils raster RCurl reproducible stringi]; }; + SpaDES_tools = derive2 { name="SpaDES.tools"; version="0.3.0"; sha256="110c8y6v6pig6bpzn82kzaxr4c2jlq83v1a9ml1n9af591mpw4gp"; depends=[bit checkmate CircStats data_table fastmatch ff ffbase fpCompare magrittr quickPlot RandomFields raster Rcpp reproducible sp velox]; }; SpaTimeClus = derive2 { name="SpaTimeClus"; version="1.0"; sha256="1l204b8yd11pxwcb026xy39f4lps4sqk6mml8cybnjch8clk9djc"; depends=[Rcpp RcppArmadillo]; }; SpadeR = derive2 { name="SpadeR"; version="0.1.1"; sha256="0iy2rkq4vvps1a73kqq37zpsyl4pvl3vh07dwvpfhvp7f8nxbx99"; depends=[]; }; SparseDC = derive2 { name="SparseDC"; version="0.1.17"; sha256="0gsfj8631s67a0r9qjjll4rbb57nzk5fwm5bbggvf0027b9hk0pp"; depends=[]; }; SparseFactorAnalysis = derive2 { name="SparseFactorAnalysis"; version="1.0"; sha256="0lgfvydxb86r5hks1mf0p0yhgpx8s8fbkc3q6dimc728rw26qcv5"; depends=[directlabels ggplot2 MASS proto Rcpp RcppArmadillo truncnorm VGAM]; }; SparseGrid = derive2 { name="SparseGrid"; version="0.8.2"; sha256="057xbj2bhjm9i32kn39iscnqqdsvsmq0b8c92l8hnf9avf1sx10x"; depends=[]; }; - SparseLearner = derive2 { name="SparseLearner"; version="1.0-2"; sha256="1qxycxpch2m2yyk97210gdzsizhlinc0hkhk5ak00rdgkrsxxc0k"; depends=[glmnet lqa mlbench qgraph RankAggreg SIS SiZer]; }; + SparseLPM = derive2 { name="SparseLPM"; version="1.0"; sha256="1mpjf7yk2haa8hch315davb6nrhxhy0w2vgw2x4111rn4bskhd8m"; depends=[gtools Rcpp RcppArmadillo vegan]; }; SparseM = derive2 { name="SparseM"; version="1.77"; sha256="0p6ljma2h12cq1xmy0cxb48ih8dhxxbnwkqzvx3cckxf2kprycm9"; depends=[]; }; + SparseMDC = derive2 { name="SparseMDC"; version="0.99.5"; sha256="0d3ashk3l9fjdbiyjhaxc05ayyscissrg7lwhnh46hv3fydbixlj"; depends=[doParallel doRNG foreach]; }; SparseTSCGM = derive2 { name="SparseTSCGM"; version="2.5"; sha256="004hbk5fdd5b5hdvg25wl1908pfya26brm2pz00zypfvis99lps3"; depends=[abind flare glasso longitudinal MASS mvtnorm network QUIC]; }; SpatEntropy = derive2 { name="SpatEntropy"; version="0.1.0"; sha256="0nk399anjhsdki9cra650ynk6sa0366495470sawxcfs3vxmlzrl"; depends=[spatstat]; }; SpatMCA = derive2 { name="SpatMCA"; version="1.0.1.0"; sha256="1sjrm1md4lmhyq1yw3np4llkgdskw3mk667jr0k3isjmr6z88gxa"; depends=[fields MASS Rcpp RcppArmadillo RcppParallel]; }; @@ -3688,17 +3837,20 @@ in with self; { SpatialPack = derive2 { name="SpatialPack"; version="0.3"; sha256="12mx62drwqx351x4jfvv87rxr28ggz7iw83firkzr5xwfwfgr02c"; depends=[]; }; SpatialPosition = derive2 { name="SpatialPosition"; version="1.2.0"; sha256="140fg3bjj7383nrdbgnk9lccj4yjq65rkprqpmf4q0mwbc89mmqc"; depends=[raster rgdal rgeos sp]; }; SpatialTools = derive2 { name="SpatialTools"; version="1.0.4"; sha256="0jgbrzsx2klvihv65y1ycqyr8awp5kqqz4qwfyfibx3b56lzna1q"; depends=[Rcpp RcppArmadillo spBayes]; }; + SpatialVS = derive2 { name="SpatialVS"; version="1.0"; sha256="0f0ps462g3v1h50fa9sznzvjdasb4lcs57ccsc02l39jlkwp7z56"; depends=[fields MASS nlme]; }; SpatialVx = derive2 { name="SpatialVx"; version="0.6-3"; sha256="0shh8b4l42h93ja6mshj2bwfz1g5j6wjwf3n3ql4yx7kc0n1y7sv"; depends=[boot CircStats distillery fastcluster fields maps smatr smoothie spatstat turboEM waveslim]; }; SpatioTemporal = derive2 { name="SpatioTemporal"; version="1.1.9"; sha256="1k674xb6q64w9izjb2mdippp6sfjnlqlq6ynmzmyi8m3pv3spga6"; depends=[MASS Matrix]; }; Spbsampling = derive2 { name="Spbsampling"; version="1.0.0"; sha256="19ci3199hwqzh82phxr4m4d1n7y3vpn5338m20qisr7plwqv7wp5"; depends=[Rcpp Rdpack]; }; + SpecDetec = derive2 { name="SpecDetec"; version="1.0.0"; sha256="1940pl4vm1kzszq0hwhqkwbk1xmrimjdf03acpdndy089mdg9avc"; depends=[abind]; }; SpecHelpers = derive2 { name="SpecHelpers"; version="0.2.7"; sha256="1v3v717ah2fkx9225860dwppdf5m6nnnaaa4iwmj30rn17nqr4jh"; depends=[gsubfn splancs]; }; SpeciesMix = derive2 { name="SpeciesMix"; version="0.3.4"; sha256="0d6hfmzxqcvg4fcvpsfxx36k95fwkws4rlylrixikndj2fncgwb5"; depends=[MASS numDeriv]; }; SpecsVerification = derive2 { name="SpecsVerification"; version="0.5-2"; sha256="0dnya9mzkf48clp51jrnkz6lc4fps38nn3lap7n2wcp3dvbvdycg"; depends=[Rcpp RcppArmadillo]; }; SpectralMap = derive2 { name="SpectralMap"; version="1.0"; sha256="15689023k9jzg3s7bx5m97dmn00z876amqhxsxksy8n8wf09wr57"; depends=[fields scatterplot3d]; }; SphericalCubature = derive2 { name="SphericalCubature"; version="1.4"; sha256="14xrxhmhavz82rcixnyharnbrvdzs6rh7gbxihaxh431d90w2q3k"; depends=[abind cubature mvmesh SimplicialCubature]; }; SphericalK = derive2 { name="SphericalK"; version="1.2"; sha256="18py4ylm10s75pihjvcy7w948379zy9l9azriw7g7pyp7px29wda"; depends=[]; }; + SplitSoftening = derive2 { name="SplitSoftening"; version="1.0-0"; sha256="1nng2rbldpxflnn7kqdp4r334lcjyznwbc50sfrd4rxyhcmmy36n"; depends=[]; }; SportsAnalytics = derive2 { name="SportsAnalytics"; version="0.2"; sha256="1vb080ak1mfvr6d0q9i3r8hd547ba80bavjdcri0gclqqcjf1ach"; depends=[]; }; - SqlRender = derive2 { name="SqlRender"; version="1.5.0"; sha256="0g9x7dkks9jcgfqz1zzkvgzgjlj2bvlbnpk1k6zc2lplxp7hgzf7"; depends=[rJava]; }; + SqlRender = derive2 { name="SqlRender"; version="1.5.2"; sha256="07x9jrrr7j6vi8blnl0byry0yh11fnf0zy9137zc4nmnp240fawv"; depends=[rJava]; }; Sstack = derive2 { name="Sstack"; version="1.0.1"; sha256="137vsas2kw3l37c141g51sgx0j6z8ys6hbxjmsdymz1fxsjr4adg"; depends=[doParallel dplyr foreach randomForest]; }; StAMPP = derive2 { name="StAMPP"; version="1.5.1"; sha256="0yyssscx3l4csban66gb4q35h37gf7pqvvycfsy56n96pnnlrgkf"; depends=[adegenet doParallel foreach pegas]; }; StMoMo = derive2 { name="StMoMo"; version="0.4.1"; sha256="1c4v2gjipq1y4crc6bqvz2x5c02bl10mh9jacg8dqb2dffsh5y44"; depends=[fanplot fields forecast gnm MASS RColorBrewer reshape2 rootSolve]; }; @@ -3708,7 +3860,7 @@ in with self; { Stack = derive2 { name="Stack"; version="2.0-1"; sha256="09fgfhw9grxnpl5yg05p9gvlz38iw4prns1jn14nj3qx01k5rnxb"; depends=[bit ff ffbase plyr stringr]; }; StagedChoiceSplineMix = derive2 { name="StagedChoiceSplineMix"; version="1.0.0"; sha256="1008gm6zv5k8lpv0qg42qjriajmx0n4kshjh76mvx91dpi788ivh"; depends=[plyr]; }; StakeholderAnalysis = derive2 { name="StakeholderAnalysis"; version="1.2"; sha256="164mah8h8izxaqp8hc43l6mlnf95pydkcx2laqrlqr9b0bybadxb"; depends=[]; }; - StanHeaders = derive2 { name="StanHeaders"; version="2.17.2"; sha256="11fcc59z63rkgk6pp5vhb5avjlbhbjs2v5mn496ai9jms4223ivc"; depends=[]; }; + StanHeaders = derive2 { name="StanHeaders"; version="2.18.0"; sha256="1h2g4j3ja71szvmwxp5c38s64zf1iamxpjlhkbc40jvw9fhbfc15"; depends=[]; }; StandardizeText = derive2 { name="StandardizeText"; version="1.0"; sha256="0s267k2b109pcdiyd26gm4ag5afikrnnb55d3cs6g2fvzp744hfp"; depends=[]; }; Stat2Data = derive2 { name="Stat2Data"; version="1.6"; sha256="0pk68ffc6ffpddfpf9wi8ch39h6k3r80kldld3z5pnql18rc8nvx"; depends=[]; }; StatCharrms = derive2 { name="StatCharrms"; version="0.90.91"; sha256="0gjxp6jz8j2kz87g17gax1pyrd498vcswrmv9az5dj52dvyxbwxf"; depends=[cairoDevice car clinfun coxme gWidgets gWidgetsRGtk2 lattice multcomp nlme R2HTML RGtk2 RSCABS survival]; }; @@ -3719,12 +3871,12 @@ in with self; { StatPerMeCo = derive2 { name="StatPerMeCo"; version="0.1.0"; sha256="1nm6brlj6h7jx8nqagrfk294ay3pfmkiizabwlb87qfnsfwchpk3"; depends=[]; }; StatRank = derive2 { name="StatRank"; version="0.0.6"; sha256="14d8v3bp8vgksi6q0mxajwd9s8zi6lns3qwi1vcr5xp9rjp4n6iy"; depends=[ggplot2 plyr truncdist]; }; SteinIV = derive2 { name="SteinIV"; version="0.1-1"; sha256="1bm4lc7g9h9jkb1dpzb84289bwxcywp0a8vylv6ipvhiqbqk5d95"; depends=[]; }; - SteinerNet = derive2 { name="SteinerNet"; version="3.0.0"; sha256="1inm36mrxsiczh9i69gbx4d0y39ccgzrjkgdp3p2a1mv0dgzvwbi"; depends=[igraph]; }; + SteinerNet = derive2 { name="SteinerNet"; version="3.0.1"; sha256="1jkvv0hsj85i1zfr1bmdsrbwgl11mxpfci3z7997m5vvb5fb5cxn"; depends=[igraph]; }; Stem = derive2 { name="Stem"; version="1.0"; sha256="1fr02mi5qyxbqavdh2hg8ggw4nfjh3vs7g0vh834h6y0v53l71r5"; depends=[MASS mvtnorm]; }; StepReg = derive2 { name="StepReg"; version="1.0.0"; sha256="1ifdns1fpsjcbwcy19h5hxnd3an53qwba2a7gpn2571zb1phraz8"; depends=[Rcpp RcppEigen]; }; StepSignalMargiLike = derive2 { name="StepSignalMargiLike"; version="2.6.0"; sha256="0j85lvs2bljfhf482r31sq3xgk8l73hcw22wgxxp8z8nla38cwf9"; depends=[Rcpp]; }; StepwiseTest = derive2 { name="StepwiseTest"; version="1.0"; sha256="1fdm4s9l6grgd45r98ybbsh40rnmnn16c0id6lv28cpmssi0iphi"; depends=[Rcpp RcppArmadillo]; }; - StereoMorph = derive2 { name="StereoMorph"; version="1.6.1"; sha256="1q0fif4azv8nd37smhmr61mr4fls1jpm1ky40aqlv6kjm336pn1c"; depends=[bezier jpeg png Rcpp rjson shiny svgViewR tiff]; }; + StereoMorph = derive2 { name="StereoMorph"; version="1.6.2"; sha256="1jjvkwln9kkjgyg1vn9ma6ffi32cxbkfh6zn69vilbdkmjcsycl2"; depends=[bezier jpeg MASS png Rcpp rjson shiny svgViewR tiff]; }; StockChina = derive2 { name="StockChina"; version="0.3.1"; sha256="1myxyfchnkskyqb5yciw1wfk3006f51y89ipzfjzdlfyzwy1lsp1"; depends=[]; }; Storm = derive2 { name="Storm"; version="1.2"; sha256="1fg8y9my9yp6px1gh43mr3m2s2z262mzq03pj52mqg3n186vk8z3"; depends=[permute rjson]; }; StrainRanking = derive2 { name="StrainRanking"; version="1.2"; sha256="1r8avm9xajqmsy4x7pgh1yaffq7wl5i5kg75kdilydwmii6n19i0"; depends=[]; }; @@ -3741,31 +3893,32 @@ in with self; { SubLasso = derive2 { name="SubLasso"; version="1.0"; sha256="12m7ynlqhikjhavd12bhsd04s9cpv8aq5xgm875i10mb3ldpd1bd"; depends=[glmnet gplots psych]; }; SubTite = derive2 { name="SubTite"; version="2.0.3"; sha256="1i95f3x1nkhx9kqzxwvi15x6yq7mcdihzjxh60la6jvq5nscfi3l"; depends=[Rcpp RcppArmadillo]; }; SubVis = derive2 { name="SubVis"; version="2.0.2"; sha256="1nb3zgm6i5lwfwdrn8mk3wkg8a4ldfvs27ai8v46l4316qc1fa9p"; depends=[Biostrings shiny]; }; + SubgrPlots = derive2 { name="SubgrPlots"; version="0.1.0"; sha256="0bhrb82yck4q72r268wqcnz2cm0sss92zff580s5jjijc2cwh3cp"; depends=[alluvial circlize colorspace diagram dplyr geoR ggplot2 gridBase gridExtra plyr polyclip scales shape sp survival survRM2 UpSetR VennDiagram]; }; SubgrpID = derive2 { name="SubgrpID"; version="0.11"; sha256="1by23gdkbls7l5xa9nl055nbm0d3138pmfmasqmcy42h62wf7dw6"; depends=[AIM ggplot2 glmnet Matrix rpart survival]; }; SubpathwayGMir = derive2 { name="SubpathwayGMir"; version="1.0"; sha256="1rw94idhbnaszr2xv1wgnjcxlnxkml912pvmqh2a1nqpwca5mscy"; depends=[igraph XML]; }; SubpathwayLNCE = derive2 { name="SubpathwayLNCE"; version="1.0"; sha256="051csjavr9549y54yirfdn266i7swsvpbcakhziyz4sl4afwx5kl"; depends=[BiasedUrn graph igraph RBGL]; }; Sunclarco = derive2 { name="Sunclarco"; version="1.0.0"; sha256="0jv92a4ciwkm0wa4irgb6ql3vf6v6p24fmbnk24pqp5p8drp8g5v"; depends=[survival]; }; Sunder = derive2 { name="Sunder"; version="0.0.4"; sha256="1na41nnscyc4v1qbwzfgqk503r39xxbi6f446pscrz3v0v121f1a"; depends=[mnormt]; }; SunterSampling = derive2 { name="SunterSampling"; version="1.0.1"; sha256="0qfld3j8xlpgp7c58zqw6gzm38m4d740lvdj5vmcflfcc6ja98sf"; depends=[]; }; - SuperExactTest = derive2 { name="SuperExactTest"; version="1.0.0"; sha256="184s0pnwv9irqjlv24svfz3ami559ln03wjknyj67pwi4pfbzz87"; depends=[]; }; + SuperExactTest = derive2 { name="SuperExactTest"; version="1.0.4"; sha256="01839mp8g0hyrhsd2n37km0dlmq53f2x6mqnghjgycg6w3dd7jjm"; depends=[]; }; SuperGauss = derive2 { name="SuperGauss"; version="1.0"; sha256="1yqskaz4zsx87mcb9p7081h2lilaiwa3213yxlkyihyans7gnmp8"; depends=[fftw Rcpp RcppEigen]; }; - SuperLearner = derive2 { name="SuperLearner"; version="2.0-23"; sha256="04bsgxdczw5gr8mkyxgzrsawv2zfcab5jd85azac3m2n08402v44"; depends=[cvAUC nnls]; }; - SuperRanker = derive2 { name="SuperRanker"; version="1.1.0"; sha256="19cfz89557ygf5dvvqykmxcr72sfa0s2d37pplp6iwbhkl4wfw04"; depends=[prodlim Rcpp]; }; + SuperLearner = derive2 { name="SuperLearner"; version="2.0-24"; sha256="0hzgqhkj638dcrd4rwi1m37i0rjap2llz6zvf32jbcc5r2i5ixmd"; depends=[cvAUC nnls]; }; + SuperPCA = derive2 { name="SuperPCA"; version="0.1.0"; sha256="02kn3gvmlnn89pk054pmyxgkh5h1qf78fym0j3xagl3cq97h1js8"; depends=[fBasics glmnet MASS matlab matlabr Matrix matrixStats pracma psych R_matlab RSpectra spls timeSeries]; }; + SuperRanker = derive2 { name="SuperRanker"; version="1.1.1"; sha256="1yiklw9zk7yw0xz5g3lmyl5lv325fnysimdwbxa37nyj6qdfv0ls"; depends=[prodlim Rcpp]; }; SuppDists = derive2 { name="SuppDists"; version="1.1-9.4"; sha256="1ffx8wigqqvz2pnh06jjc0fnf4vq9z2rhwk2y3f9aszn18ap3dgw"; depends=[]; }; SurfaceTortoise = derive2 { name="SurfaceTortoise"; version="0.1.0"; sha256="0cw2nsqc9dx36svb49pqkmrxwk5hhbih206mwwkzfyavswxd2lpv"; depends=[gstat gtools raster rgdal rgeos sp]; }; - Surrogate = derive2 { name="Surrogate"; version="0.9"; sha256="10prqish36nvkipmagqqr5whq2qhy26nlm636i4kyj2iw3139xzg"; depends=[lattice latticeExtra lme4 logistf MASS mixtools msm nlme OrdinalLogisticBiplot rgl rms survival]; }; + Surrogate = derive2 { name="Surrogate"; version="1.1"; sha256="1wmvr0wmhb0pfgn5rjq7v0zvkcy0bn01bqylbimkfrp5qlc2nf65"; depends=[extraDistr ks lattice latticeExtra lme4 logistf MASS mixtools msm nlme OrdinalLogisticBiplot rgl rms rootSolve survival]; }; SurrogateTest = derive2 { name="SurrogateTest"; version="1.0"; sha256="0dw8ic2rskwhj9f013q0j5my7qfsqihfis93frrlz4qag68jddqn"; depends=[survival]; }; SurvCorr = derive2 { name="SurvCorr"; version="1.0"; sha256="01rqdl503q1qnkn49iqnsjzis6azdsfi6s2hjky5k2zd6c9g18k5"; depends=[fields survival]; }; SurvDisc = derive2 { name="SurvDisc"; version="0.1.1"; sha256="0ajvnm0a4krbm0m584bg58hd7dzl0f2rz5as1zsajx8agywb5qmv"; depends=[cubature MASS mvtnorm nlme simex survival]; }; SurvGSD = derive2 { name="SurvGSD"; version="1.0.0"; sha256="0aa5zaf9akkqkxs8iqwnm93sfwakhhhs3qfafbk0vrwmb5yvzzm1"; depends=[flexsurv ldbounds mnormt]; }; SurvLong = derive2 { name="SurvLong"; version="1.0"; sha256="000ywg0sdk9kailiy7ckhq4mkaawl9hh88w6apj5khgpxsyj8aw3"; depends=[]; }; - SurvRank = derive2 { name="SurvRank"; version="0.1"; sha256="1i08yjprzd9irs46rifa5fsmmhwbsf4py0m8qp5rprznyr8504y3"; depends=[doParallel foreach ggplot2 glmnet gplots ipred mboost randomForestSRC reshape rpart sampling survAUC survival]; }; SurvRegCensCov = derive2 { name="SurvRegCensCov"; version="1.4"; sha256="0ipr7lajnrklk963lrlgx946l6r191q3bfif4njkdmw0x797nzm2"; depends=[numDeriv survival]; }; + SurvTrunc = derive2 { name="SurvTrunc"; version="0.1.0"; sha256="0b6s7llljp75agd57lmc1yq5acnfwy113khrfjcbm1l5ply6pz7f"; depends=[survival]; }; Survgini = derive2 { name="Survgini"; version="1.0"; sha256="1gxkdv2j1njbgnwb52vyhz7p2lrcg3hp6sry3kyhp4wkvf6gnhxi"; depends=[survival]; }; SvyNom = derive2 { name="SvyNom"; version="1.1"; sha256="1jym2x6nd9a3y7nk5hflqpy54gs67y4sqqspkvkalf5l2cc64did"; depends=[Hmisc rms survey survival]; }; SwarmSVM = derive2 { name="SwarmSVM"; version="0.1-4"; sha256="1b0h1jfywsrfdj8dkbnlzvh7654rycagxij9jbzb65g6swss6ajx"; depends=[BBmisc checkmate e1071 kernlab LiblineaR Matrix SparseM]; }; - SweaveListingUtils = derive2 { name="SweaveListingUtils"; version="0.7.7"; sha256="04yxhphf069y29b40i34kr4hvlcv8kgr6kqc2vdz2a40564fdsjb"; depends=[startupmsg]; }; - SwissAir = derive2 { name="SwissAir"; version="1.1.4"; sha256="1avc32q7nbwjkcbml7z05car6khv1ghcz3miw0krm8i53w032c6f"; depends=[]; }; + SwissAir = derive2 { name="SwissAir"; version="1.1.5"; sha256="0lh69924vhyilgn562jqn8m7z4dq3xmdj09501sbs7hbxfaiiyly"; depends=[]; }; SyNet = derive2 { name="SyNet"; version="2.0"; sha256="0mb9dscddkvmkf7l3bbcy4dlfmrvvy588vxdqy5dr783bpa5dkiw"; depends=[tkrplot]; }; SymTS = derive2 { name="SymTS"; version="1.0"; sha256="17vhm00zd9yxl6li36bsfkm4rsizjsm93ibrzgqnkl72sqmmlwfi"; depends=[]; }; SympluR = derive2 { name="SympluR"; version="0.3.0"; sha256="0a3irbk5bh3af8rv4l4sh3ymj3icyqjv5akzmx6rrp6pr3mgq6c6"; depends=[httr jsonlite plyr readr]; }; @@ -3774,25 +3927,26 @@ in with self; { SynchWave = derive2 { name="SynchWave"; version="1.1.1"; sha256="127hllvig8kcs9gr2q14crswzhacv6v2s4zrgj50qdyprj14is18"; depends=[fields]; }; Synth = derive2 { name="Synth"; version="1.1-5"; sha256="1cfvh91nz6skjk8jv04fhwv3ga9kcsfgq3mdy8lx75jkx16zr0pk"; depends=[kernlab optimx]; }; T2EQ = derive2 { name="T2EQ"; version="1.1"; sha256="1skkkryw63pfx1xslia1lczb2psja6v6hcbph4isdcksb4l4pcig"; depends=[]; }; - TAM = derive2 { name="TAM"; version="2.12-18"; sha256="1mbhf5ni2a1mlyh8qa7id3p0h1baqigmh5ch2yf18h8mn52ig47i"; depends=[CDM coda MASS mvtnorm Rcpp RcppArmadillo sfsmisc]; }; + TAM = derive2 { name="TAM"; version="2.13-15"; sha256="0c13327dp2whnmns0k53f5rc2cz60kjhdh6nq4q021yhm2j4xd81"; depends=[CDM coda MASS mvtnorm Rcpp RcppArmadillo sfsmisc]; }; TANDEM = derive2 { name="TANDEM"; version="1.0.2"; sha256="1h6m6aq2b5m9gdy4nck4dxv75gv50pfdhxx8xifgyv0d7n8czabq"; depends=[glmnet Matrix]; }; TANOVA = derive2 { name="TANOVA"; version="1.0.0"; sha256="0c2mrahchwagisrkjl5l1s0mv0ny80kngq8dz0fjj9lwxwqwvwa5"; depends=[MASS]; }; TAQMNGR = derive2 { name="TAQMNGR"; version="2018.5-1"; sha256="0bf0sgqa53l9y2bhwg2ngiwlcgrmj0nvxchlsmcc8zin388qf4pb"; depends=[Rcpp]; }; TAR = derive2 { name="TAR"; version="1.0"; sha256="0wjh2n9x3yn9by9a6mjvkl96qy7z549g6dsqp7b4d96xwmyqxlbv"; depends=[mvtnorm]; }; TBEST = derive2 { name="TBEST"; version="5.0"; sha256="15piy507vv8x59xgga17splxszy0vm87qjbfgxycvba633jishsa"; depends=[fdrtool signal]; }; - TBFmultinomial = derive2 { name="TBFmultinomial"; version="0.1.1"; sha256="0cwga4pkfz4azm62v54jql07ymkhm97wyccz4gg6mhwy4qzigyjq"; depends=[nnet plotrix stringr VGAM]; }; + TBFmultinomial = derive2 { name="TBFmultinomial"; version="0.1.3"; sha256="0cd0dr8vkf0sfriaafp2x63dilxmirm0fljxm82zw77c9j5ly3kv"; depends=[nnet plotrix stringr VGAM]; }; TBSSurvival = derive2 { name="TBSSurvival"; version="1.3"; sha256="1r87qvnlvc18i12yi25lfpdb8b5p33fywi38hs2xp1y2vbvz5s9b"; depends=[BMS coda mcmc normalp R_utils Rsolnp survival]; }; TCGA2STAT = derive2 { name="TCGA2STAT"; version="1.2"; sha256="15a5lh0nrdcxdwj7wj5m9rsvk1ygpp6wdjb4swilk91rb1lblikv"; depends=[CNTools XML]; }; TCGAretriever = derive2 { name="TCGAretriever"; version="1.3"; sha256="0mi8j7k2b1sx75ka8ympydqpk8jqp8wz8dyf4vk4776fra7bq24p"; depends=[httr]; }; TCIApathfinder = derive2 { name="TCIApathfinder"; version="1.0.2"; sha256="1fgjmz297jckdb0xsly1scq5n8y8awfgdkr4yfml4lim2mkdsigx"; depends=[httr jsonlite]; }; - TDA = derive2 { name="TDA"; version="1.6.2"; sha256="1vkb4d3ayw8y4iskd6y1y9hnp0baidaxiqjqydxv2jwkdx0x9c3z"; depends=[BH FNN igraph Rcpp RcppEigen scales]; }; + TDA = derive2 { name="TDA"; version="1.6.4"; sha256="0ni8lmdsf2q36rrgq3ay382m12834agfcw5rlqfa7fbqgmy4c9xs"; depends=[BH FNN igraph Rcpp RcppEigen scales]; }; TDAmapper = derive2 { name="TDAmapper"; version="1.0"; sha256="0cxgr2888v8azgdr3sg4vlcdyivkrxkk6dsp1ahv4frrwvg2z09k"; depends=[]; }; + TDAstats = derive2 { name="TDAstats"; version="0.3.0"; sha256="11g9yfgimkyl9z8kvzlvgkwc61vhdgvp6zy2izdbj18fxyqmcn3s"; depends=[ggplot2 Rcpp]; }; TDCor = derive2 { name="TDCor"; version="0.1-2"; sha256="18085prcwhl5w717f1f7jcqskw2jvigvjjs2l5y6106ibiam6hxx"; depends=[deSolve]; }; TDD = derive2 { name="TDD"; version="0.4"; sha256="193y8brybkjsajrbnlx1sdnw1wyyn9rhlm5wvp4aamqhvi8z13vn"; depends=[pracma RSEIS signal]; }; TDMR = derive2 { name="TDMR"; version="2.0"; sha256="1dqyi7i4spacg0n6f3zdhyb84crlbqvkb8xdmvdjr1jd1zx5gc32"; depends=[adabag SPOT testit twiddler]; }; TDPanalysis = derive2 { name="TDPanalysis"; version="0.99"; sha256="1kyhs4rpkm3gr55l6hrz4xcb9igk95si1m1sp175580k16n885z0"; depends=[plyr]; }; TDboost = derive2 { name="TDboost"; version="1.2"; sha256="0sc9vby4892gm5b5h8gbdl4misqvgbkfp8fms53dk83malxkw1zx"; depends=[lattice]; }; - TE = derive2 { name="TE"; version="0.2-2"; sha256="1yy6ky11ijnnkz2a4g6lww870pb4himn9nx230jnxpr0q8nsfqpb"; depends=[MASS rainbow]; }; + TE = derive2 { name="TE"; version="0.3-0"; sha256="15530a5qjlh74c1qji76j25mm4c59gifp34y066f8j21f70rahfs"; depends=[MASS rainbow]; }; TED = derive2 { name="TED"; version="1.1.1"; sha256="0nb2arx7c1m8ymnkmj3jwbcw23vhkr1f3vlym2hqs0pq0lnsl4g0"; depends=[animation fields foreach geoR RcppArmadillo zoo]; }; TEEReg = derive2 { name="TEEReg"; version="1.1"; sha256="0v5qz3vvmcm3fh16kjb05j1r0yj23r7hrxf2www20ng3dmga5q0f"; depends=[]; }; TELP = derive2 { name="TELP"; version="1.0"; sha256="0wzm3dz0489ha7dd6lkashvvjydck9jw2pavlx9plpksvzr4q9ph"; depends=[arules arulesViz ggplot2 gridExtra RColorBrewer tcltk2 tm wordcloud]; }; @@ -3800,26 +3954,26 @@ in with self; { TERAplusB = derive2 { name="TERAplusB"; version="1.0"; sha256="0mshx615awcf2arm39mgw2gzgpyn7a3f767484g7z4nqqlikwpgc"; depends=[]; }; TESS = derive2 { name="TESS"; version="2.1.0"; sha256="05xsz2v847pwj4ja7hmg3zfbfqrwwzpf0ri0gjzb8snm2a7xm23y"; depends=[ape coda deSolve Rcpp]; }; TExPosition = derive2 { name="TExPosition"; version="2.6.10"; sha256="12rgijlclaipwjjiyng7nwilzixdy6lsvncigcg0vjydhgk97jn1"; depends=[ExPosition prettyGraphs]; }; - TFDEA = derive2 { name="TFDEA"; version="0.9.8.3"; sha256="0qg4nhlqqj7hc8lg732zz8klbbp3yksnq8q8n4ml3jz8gadrpyj7"; depends=[lpSolveAPI]; }; TFMPvalue = derive2 { name="TFMPvalue"; version="0.0.8"; sha256="0h9qkl15k8v17v3g9bdnfwvh2s04ywjgg5y0xn2077dmywlja1bd"; depends=[Rcpp]; }; TFX = derive2 { name="TFX"; version="0.1.0"; sha256="0xrjdbvg0ng4i0s8ql1pfyma10x4n045spilkb05750677r5j44p"; depends=[XML]; }; TFisher = derive2 { name="TFisher"; version="0.2.0"; sha256="0vz74ww1lf1prfwz74hfsi3a8nzq8ss7aqjr85c1d87vss2796xx"; depends=[Matrix mvtnorm sn]; }; - TH_data = derive2 { name="TH.data"; version="1.0-8"; sha256="17csnwyk2f3d47nghkfy9wly5kff8zhdcfwfml7509hjrjgi13s7"; depends=[MASS survival]; }; + TH_data = derive2 { name="TH.data"; version="1.0-9"; sha256="03xfvww0krw0fn76qmmvrj7dx4shin57qafwhkrggfg25hbqlcfq"; depends=[MASS survival]; }; TIMP = derive2 { name="TIMP"; version="1.13.0"; sha256="0b6g2afwjz2m7bnfhx1pjmq6x1ghjxgrwi6hz1l867qa4i2yx5hx"; depends=[colorspace deSolve fields gclus gplots minpack_lm nnls]; }; TITAN2 = derive2 { name="TITAN2"; version="2.1"; sha256="0cxcgkf776411ln5wbfdyjxa42jw473vcq1kns6k6p8dpm1y91c2"; depends=[]; }; TInPosition = derive2 { name="TInPosition"; version="0.13.6"; sha256="1cxxrfpbiyknaivv6gyp79lz0rxwhrndcd054smksxq8zcfz0v7c"; depends=[ExPosition InPosition prettyGraphs TExPosition]; }; TKF = derive2 { name="TKF"; version="0.0.8"; sha256="1db87lwx26ayv1x2k8qd9dfr6j3jkvdl9ykisaxr42l6akqy21nr"; depends=[ape expm numDeriv phangorn phytools]; }; TLBC = derive2 { name="TLBC"; version="1.0"; sha256="08w187akbhfbz6nrrf7avf02lrhgj7bbrjmim9gkh4wlbjhzvw67"; depends=[caret HMM randomForest signal stringr]; }; - TLMoments = derive2 { name="TLMoments"; version="0.7.2.1"; sha256="1xgkbdnh79dj54jg5kf0c5kwykcvjaf4y16yyqf0vcc7aand6a3y"; depends=[hypergeo Rcpp]; }; + TLMoments = derive2 { name="TLMoments"; version="0.7.4"; sha256="0p3d4ydz22k5ardk8qr7sgfhg9qw655bjlbjckvzwps8cbxgnag3"; depends=[ggplot2 hypergeo Rcpp]; }; TLdating = derive2 { name="TLdating"; version="0.1.3"; sha256="12lmakk1zd6wqh1318pnl14i7km2hynjn4ymchfjr2bwmp45c1ra"; depends=[gplots Luminescence]; }; TMB = derive2 { name="TMB"; version="1.7.14"; sha256="0bpc504nz8xfwr8ack52dj4hpjcykn6zyf8n228z32dw9d5n96dl"; depends=[Matrix RcppEigen]; }; TMDb = derive2 { name="TMDb"; version="1.0"; sha256="0bbcmsv7b3vvskhdjww03gbcgql44vsvyjz2fajy9w2vgkr6ga90"; depends=[httr jsonlite]; }; TNC = derive2 { name="TNC"; version="0.1.0"; sha256="0639wvylmk9mapvmz79ij65g1phv3ylc683awi4pgaf9yfwlmjkn"; depends=[]; }; TOC = derive2 { name="TOC"; version="0.0-4"; sha256="1c16d4wrzir6v3c323sck6r9yz6mv1a70xamlj5ha1ydmfixcza9"; depends=[bit raster rgdal]; }; - TOSTER = derive2 { name="TOSTER"; version="0.3.3"; sha256="1b1zmg0klf26hajlf420vpf8yf47np2l6ccl6062jmakg37ngh00"; depends=[ggplot2 jmvcore R6]; }; + TOSTER = derive2 { name="TOSTER"; version="0.3.4"; sha256="1pxcvlw2nhh1sv0d662xc61rykf7kz7f4xjq3yrqf119gjcmps5s"; depends=[ggplot2 jmvcore R6]; }; TP_idm = derive2 { name="TP.idm"; version="1.5"; sha256="07rxn0mpar3p6blg8fd3kbvdngyz9h9n0r0lcljnfdajfzbysv7h"; depends=[]; }; TPD = derive2 { name="TPD"; version="1.0.0"; sha256="1fwj5l519mwsffm2pw2nbpm1mnlxkxzl53i7sqy810fccw47hgag"; depends=[ggplot2 gridExtra ks mvtnorm]; }; TPEA = derive2 { name="TPEA"; version="3.1.0"; sha256="1yyc3q4dyf4d8m7wi851dnxf3xnvvfnvj28kl8z8py4r4jsb2hfy"; depends=[foreach igraph Matrix MESS RCurl XML]; }; + TPMplt = derive2 { name="TPMplt"; version="0.1.0"; sha256="15jr2ww5vk6ac3h5bqdbsnch7fdn9c3vy5k3gdc271vf4cvghw93"; depends=[e1071 ggplot2 qpcR rgl rowr VBTree]; }; TPmsm = derive2 { name="TPmsm"; version="1.2.1"; sha256="1vynzb6qpp8785rdjyarhvwbkasviamhljjlnp4i0dds96wwdgx1"; depends=[KernSmooth]; }; TR8 = derive2 { name="TR8"; version="0.9.18"; sha256="14nfyqwqv1l5lr5zvywd5pxrv4qz0g5v5x8sdxkjbkxi9s7xrlaw"; depends=[gWidgets gWidgetstcltk plyr rappdirs RCurl readxl reshape taxize XML]; }; TRADER = derive2 { name="TRADER"; version="1.2-3"; sha256="1w9m2b866dyj82s118m64q8j9a1chpq2km2pnn9mfwwj8sivgdgn"; depends=[dplR]; }; @@ -3829,6 +3983,7 @@ in with self; { TRSbook = derive2 { name="TRSbook"; version="1.0.2"; sha256="0lj20i6gybinc196nzjfi6ayzmm970s9vp43lj60v96g5dl7qv1b"; depends=[gdata IndependenceTests RColorBrewer xtable]; }; TSA = derive2 { name="TSA"; version="1.2"; sha256="0gjfqibwdznz0nka95k4fjm935svxjpnqfywwz403crn2lh30h6q"; depends=[leaps locfit mgcv]; }; TSCS = derive2 { name="TSCS"; version="0.1.1"; sha256="0dllaw69rl26hgqac5q66k13gfmnxhn3wf0j8nx5xvi7yclzc3ay"; depends=[ggplot2 rgl tseries]; }; + TSEntropies = derive2 { name="TSEntropies"; version="0.9"; sha256="1bwb3kyhzc6sxhvpagf4vjmh8ghx44lpc9ms4jwrsrzdhcvnfc7l"; depends=[]; }; TSEtools = derive2 { name="TSEtools"; version="0.1.1"; sha256="1s39j41s5d9zakvr536l7m9f72yjh3cbfpd6pijvcr3n3dznmra9"; depends=[xts]; }; TSF = derive2 { name="TSF"; version="0.1.1"; sha256="0v3pq64yknp3n6lw6c87slv1avsv7rlb82gm670q4jzv5d174phv"; depends=[forecast fracdiff]; }; TSGSIS = derive2 { name="TSGSIS"; version="0.1"; sha256="0zrlin6xi6sv5qb18a0wi8lzldqlwa9lbwnra44w3jza3kakff7n"; depends=[glmnet MASS]; }; @@ -3856,10 +4011,10 @@ in with self; { TSrepr = derive2 { name="TSrepr"; version="1.0.1"; sha256="07gxsp4cfzpjmm6l9wpcdxar3sngm0ih0gp4c8gb6kyzm7pb780n"; depends=[dtt MASS mgcv quantreg Rcpp wavelets]; }; TSsdmx = derive2 { name="TSsdmx"; version="2016.8-1"; sha256="06h1iwgshiq4bvly5l1nrddrh2knc82z2aqxh8ls9ipbs7qjsvaf"; depends=[DBI rJava RJSDMX tframe tframePlus TSdbi]; }; TSsql = derive2 { name="TSsql"; version="2017.4-1"; sha256="0f71q6gqfx4r3ghsmr572cvkpmf2xf7kipf10ii99z1y23dxmsdn"; depends=[DBI tframe tframePlus TSdbi zoo]; }; - TSstudio = derive2 { name="TSstudio"; version="0.1.1"; sha256="1myvih5kd9pliczddjscqlq811dswqh9d8an8p5bi12h31w9pp30"; depends=[forecast lubridate magrittr plotly reshape2 xts zoo]; }; + TSstudio = derive2 { name="TSstudio"; version="0.1.2"; sha256="1wl902mmddcbd8xk35n4gcdy8gk7vrb3ii110mkvwkbxw463b40l"; depends=[bsts colormap data_table dplyr forecast forecastHybrid lubridate magrittr plotly RColorBrewer reshape2 scales viridis xts zoo]; }; TTAinterfaceTrendAnalysis = derive2 { name="TTAinterfaceTrendAnalysis"; version="1.5.4"; sha256="0r79qbmn4z9v4f4g737xs3mhc4dp6s6llkcz6c3hihwnq1vrvd7h"; depends=[e1071 lubridate multcomp mvtnorm nlme pastecs relimp reshape rkt tcltk2 zoo]; }; TTCA = derive2 { name="TTCA"; version="0.1.1"; sha256="16slr4c2nwbchsg6fk5prq22p2v4cjxzk93wd3xggav2lzrf8a5h"; depends=[MASS Matrix quantreg RISmed tcltk2 VennDiagram]; }; - TTR = derive2 { name="TTR"; version="0.23-3"; sha256="07r62ngyzjl4aszdxnr3n6bnbcgcap32yhd430jsilicg8n06di1"; depends=[curl xts zoo]; }; + TTR = derive2 { name="TTR"; version="0.23-4"; sha256="18mzyv6cmxmqyqsfwlx2b2k055887mfgc2jgj8xkn8c6m56n05zb"; depends=[curl xts zoo]; }; TTS = derive2 { name="TTS"; version="1.0"; sha256="0dhxj474dqjxqg0fc2dcx8p5hrjn9xfkn0rjn2vz3js92fa9ik9h"; depends=[mgcv sfsmisc]; }; TTmoment = derive2 { name="TTmoment"; version="1.0"; sha256="0a4rdb4fk1mqnvvz0r15kni0g5vcj4xkkcwwv7c2gxc94xh5i5ih"; depends=[mvtnorm]; }; TUWmodel = derive2 { name="TUWmodel"; version="1.0-1"; sha256="1q150r0m93cjj0q1qvn4drhgvhvvgb63d8iii5crhzjpqbdhyka7"; depends=[]; }; @@ -3869,20 +4024,23 @@ in with self; { TableToLongForm = derive2 { name="TableToLongForm"; version="1.3.1"; sha256="135q0bgsm2yndrg3vpwmihbqlyf3qkm97i0jvcw6bf06p6b2fk41"; depends=[]; }; TailRank = derive2 { name="TailRank"; version="3.2.1"; sha256="142m0cq9j8y5g9wh4plxya1jqi0dv6p6praxx3jb84kwqspi91xr"; depends=[Biobase oompaBase oompaData]; }; TanB = derive2 { name="TanB"; version="0.1"; sha256="05y9j1a5nzqfpsw48gix5c4ds1cm80liad9wnwmddhbx4fda6p32"; depends=[fdrtool pracma]; }; + TangPoemR = derive2 { name="TangPoemR"; version="0.1.0"; sha256="06w5gg36mx0vdagkhy7rskgjv2d3irr0d3nkjw26vxp25x1py4sf"; depends=[jiebaR]; }; TaoTeProgramming = derive2 { name="TaoTeProgramming"; version="1.0"; sha256="1b36s5mpm5vbhzcwmvm8g5pl7vpn6rsl5cnglfy8kgm1q9nnr7ff"; depends=[]; }; TapeR = derive2 { name="TapeR"; version="0.3.3"; sha256="0q5j7pn05z7hinwl5ypnrgh9ibsw6hvdfszjbnvavzab3bx8l6nn"; depends=[nlme pracma]; }; - Tariff = derive2 { name="Tariff"; version="1.0.3"; sha256="1z1yzy4f9k0zxa6zx1vp5axgjszics5wa8niy6087jz3r7y2bwph"; depends=[]; }; - TauP_R = derive2 { name="TauP.R"; version="1.1"; sha256="10sjvcv70fjrsl5nnk9gm4sy7nhwm6aaq57gr37cb10v079ykmk1"; depends=[]; }; + Tariff = derive2 { name="Tariff"; version="1.0.4"; sha256="1sf7qzv6cdx1k0h5cc2w1jbcpg07j02r5h31xcbsnsgd7wj3h3q1"; depends=[]; }; + TauP_R = derive2 { name="TauP.R"; version="1.5"; sha256="02vk9rj8yx4n2pihgk93bs2f9wkpkyfqm2kp7ixj4wpa29a0iq6v"; depends=[]; }; TauStar = derive2 { name="TauStar"; version="1.1.3"; sha256="06iq3kjbhyx2i8qlhvamnlch4j32psgw8q0wnvs4js513r6c0cqn"; depends=[Rcpp RcppArmadillo]; }; + TaxicabCA = derive2 { name="TaxicabCA"; version="0.1.0"; sha256="0mkw7d2pksj98kyg2951achmvsr0x7f4snq0kk1s5158b5yi5npn"; depends=[]; }; Taxonstand = derive2 { name="Taxonstand"; version="2.1"; sha256="0dvhiqggbv1by284fg38rcvvrxr9q3zp5gh51p1dh0129h73qj7i"; depends=[pbapply]; }; TcGSA = derive2 { name="TcGSA"; version="0.11.1"; sha256="072i04cp91v2ygarpqg8dlqqf8hia0ryambcv83fcchz9hzs2yx6"; depends=[cluster cowplot ggplot2 gplots GSA gtools lme4 multtest reshape2 stringr]; }; Tcomp = derive2 { name="Tcomp"; version="1.0.1"; sha256="1k0gsf3yr5n9zc2yi6szxm6s7bf61lz4fx8m3v48jlp5w900prwb"; depends=[forecast Mcomp]; }; - TeXCheckR = derive2 { name="TeXCheckR"; version="0.5.1"; sha256="18p3hyrrglgn2fdn5q9p1ayb58nznpdr5sy9mniybzsxrmfhghax"; depends=[clisymbols crayon data_table fastmatch hunspell hutils magrittr rstudioapi zoo]; }; + TeXCheckR = derive2 { name="TeXCheckR"; version="0.6.0"; sha256="1qrzslcipg3j1317dhizxhcxyx2dpx7jh91vkms10wgc6vpqgrw4"; depends=[clisymbols crayon data_table fastmatch hunspell hutils magrittr rstudioapi zoo]; }; TeachBayes = derive2 { name="TeachBayes"; version="1.0"; sha256="1mfhlkm7wp2i4hvc63xzfyw3q4z1xhlbi933pkqkbrhih94z4rz7"; depends=[dplyr ggplot2 gridExtra LearnBayes shiny]; }; TeachNet = derive2 { name="TeachNet"; version="0.7"; sha256="1p39bsf846r7zwz4lrrv2bpyx9yrkqzrnacajwrz3jjqj6qpp6cn"; depends=[]; }; TeachingDemos = derive2 { name="TeachingDemos"; version="2.10"; sha256="016pivvy8gzz8f3clnr5dg488rb1lf0l5s00c3v34gm1dgiw5x1f"; depends=[]; }; - TeachingSampling = derive2 { name="TeachingSampling"; version="3.2.2"; sha256="07c1wx7hl246kvj9ah55kdjpag8a9zbzh3jy0680w5nnv8vzsxxs"; depends=[]; }; - TempleMetrics = derive2 { name="TempleMetrics"; version="1.1.0"; sha256="02cs2dgcmxgz1y98x4rpq4l4khqvbnr0248s6rgrgq5l3z2s4qr0"; depends=[BMisc pbapply]; }; + TeachingSampling = derive2 { name="TeachingSampling"; version="3.4.2"; sha256="1r06if6ljlr9i3y5ri7akris97dsjy3n3n6sgz2dvy9szm4zsadp"; depends=[]; }; + TempleMetrics = derive2 { name="TempleMetrics"; version="1.2.0"; sha256="0g8a799grsjqyq55pnlgixyq2qxhvl5k01jcjwc08q54w2dg0xf0"; depends=[BMisc pbapply]; }; + Temporal = derive2 { name="Temporal"; version="0.1.1"; sha256="0x001apiph67cyh2ckx2k9mi6jb86agnmfvn94i27q9lpy4cn1sh"; depends=[expint numDeriv plyr Rcpp RcppEigen]; }; Ternary = derive2 { name="Ternary"; version="1.0.1"; sha256="0myppwcb4qvz9nkig641zrlf8yhy96qyg1yzh5nnli8a8xg0hjpk"; depends=[]; }; TestDataImputation = derive2 { name="TestDataImputation"; version="1.0"; sha256="07k4sgjda1gwdlx5rap5fhs5rww2ahzyf0fq98dsm99gvjajnmwn"; depends=[Amelia mice]; }; TestFunctions = derive2 { name="TestFunctions"; version="0.2.0"; sha256="018nkz8r6vqahrzq3d588i3ffb1bmd1pdk87j4ivcdsx99mq15sn"; depends=[]; }; @@ -3891,21 +4049,20 @@ in with self; { TexExamRandomizer = derive2 { name="TexExamRandomizer"; version="1.2.3"; sha256="0l0vpx4rkib2m8hwhwy9j8pqyf7gpb9qg8wpnh3238snwpadgy3a"; depends=[assertthat jsonlite Rcpp stringr]; }; ThankYouStars = derive2 { name="ThankYouStars"; version="0.2.0"; sha256="0r77ns3102wj1wvrfsa06l427imxyfhigpbs36cdxl2j87qrjzl6"; depends=[httr jsonlite]; }; ThermIndex = derive2 { name="ThermIndex"; version="0.2.0"; sha256="0s9d55577dq61qixwwfwmqc2k2c8my00j2ng97ng42cw0jc7aylm"; depends=[]; }; - Thermimage = derive2 { name="Thermimage"; version="3.1.0"; sha256="1gbbmmgmp6a8swl6kdfzf4kj9dpm17m809r2xrc58wg8gslx8m1c"; depends=[png tiff]; }; + Thermimage = derive2 { name="Thermimage"; version="3.1.1"; sha256="10jffqhqvy2is41cgzmkzrncqd65yjsyag8qli114s799qd9g3bm"; depends=[png roxygen2 tiff]; }; Thinknum = derive2 { name="Thinknum"; version="1.3.0"; sha256="0j48vgr4wsc2chm95aprq0xm0dk720xk5zmiijxasg92sfp0va6n"; depends=[RCurl RJSONIO]; }; ThreeArmedTrials = derive2 { name="ThreeArmedTrials"; version="1.0-0"; sha256="075cn99k06lgdd0cwl1i9242fcxwmd5malcyks0mmwjf9kzw00z2"; depends=[MASS numDeriv]; }; ThreeGroups = derive2 { name="ThreeGroups"; version="0.21"; sha256="0hipxa45v9ysb2qbk33kjycnvqar7bff1ajxd6fzhpc3jc9hflw4"; depends=[]; }; ThreeWay = derive2 { name="ThreeWay"; version="1.1.3"; sha256="17yl8zq029wiy3c0f4ssljx85dnm9n862wj2d24w7p0lxlvarmz6"; depends=[]; }; - Thresher = derive2 { name="Thresher"; version="0.12.3"; sha256="1lrydxrv67ga73bzxyvnibmggr9kixq2jb6as4cv35rm93vs5mrg"; depends=[ade4 ClassDiscovery colorspace MASS movMF oompaBase PCDimension]; }; + Thresher = derive2 { name="Thresher"; version="1.0.2"; sha256="06qc2dzapp78d27x855fc03k7p878bkv6b1ry4a9m23kmlvsyfi4"; depends=[ade4 ClassDiscovery colorspace MASS movMF oompaBase PCDimension]; }; ThresholdROC = derive2 { name="ThresholdROC"; version="2.6"; sha256="0ah102z6v9k5pxp3kbj5ffa9vhb7vi7axjkrg5qy5b4spnb71qsg"; depends=[MASS numDeriv pROC]; }; TickExec = derive2 { name="TickExec"; version="1.1"; sha256="0v0m0wi49yw0ply19vnirl2zwnk61sxalx24l8cadvkssgs13509"; depends=[]; }; TiddlyWikiR = derive2 { name="TiddlyWikiR"; version="1.0.1"; sha256="0vwwjdmfc8c0y2gfa8gls1mzvp29y39c9sxryrgpk253jj9px1kr"; depends=[]; }; TideCurves = derive2 { name="TideCurves"; version="0.0.3"; sha256="0wll0zbkfas6hs4h8ma5km68nv2brw1k75ngw5lrnxilya22lrgp"; depends=[chron data_table fields]; }; TideHarmonics = derive2 { name="TideHarmonics"; version="0.1-1"; sha256="1g1v99gh6mns4l8ipmw7kpalbk07m92ybcqjq7b0wsjmdvs1y67s"; depends=[]; }; TideTables = derive2 { name="TideTables"; version="0.0.2"; sha256="1grm9s9np7xs2d8gql4sgg72rxpxiidw6g1ni8q97qgqr7r3105l"; depends=[chron data_table]; }; - Tides = derive2 { name="Tides"; version="2.0"; sha256="0s7ja0vs8ag7myjq4kmza4ja9p76sdbbkaaamxbsgp9yaf02c6nf"; depends=[]; }; - TileManager = derive2 { name="TileManager"; version="0.2.0"; sha256="1zk5q1m3imlr9ms81jyb9kibm0m5zmiidsv86qgnqj8r4b8hpqyh"; depends=[APfun raster rgeos sp]; }; - TimeMachine = derive2 { name="TimeMachine"; version="1.2"; sha256="1dz0j777wmd8mpkm2ryiahpcw6w88w429zjcw6m67pi20r1992cb"; depends=[]; }; + Tides = derive2 { name="Tides"; version="2.1"; sha256="0da3z010ali83qf8mf1znicqv8vvsa5r93mc40ax60ln2w33nlrm"; depends=[]; }; + TileManager = derive2 { name="TileManager"; version="0.3.0"; sha256="1my9ljgr7j9qvgc2f2qj7d8m0yp0jq8xhq31jc6mnzbsppmr1q6n"; depends=[APfun raster rgeos sp]; }; TimeProjection = derive2 { name="TimeProjection"; version="0.2.0"; sha256="04yr4cg2khkw9n3y3qk0ni1327k4pxm09zz2xg8mpjdvgi4p9yi3"; depends=[lubridate Matrix timeDate]; }; TimeSeries_OBeu = derive2 { name="TimeSeries.OBeu"; version="1.2.2"; sha256="1a44fb29yacwgdiwaf5fpxzc5222cpi5mkv7l0dh43b6lh8f0j5k"; depends=[forecast jsonlite locfit trend tseries]; }; TimeVTree = derive2 { name="TimeVTree"; version="0.3.1"; sha256="124kg9zcq4b2j4qvg9f6gykbmzf69qjnnw54nv213ip2h4rdkv32"; depends=[survival]; }; @@ -3919,8 +4076,8 @@ in with self; { ToolsForCoDa = derive2 { name="ToolsForCoDa"; version="1.0.2"; sha256="0x05phwm6gqw1pmars1ypg86sggflffw9g2d0lc5gfsy93nrg0rv"; depends=[calibrate HardyWeinberg MASS]; }; TopKLists = derive2 { name="TopKLists"; version="1.0.6"; sha256="1hmm9g68scq8sqdb9axqn51p00mx6p6lw0fdgjljfi2q72xcqhq3"; depends=[gplots Hmisc]; }; TotalCopheneticIndex = derive2 { name="TotalCopheneticIndex"; version="1.0.0"; sha256="1w8irl49cxg0rsbk57cl443gmy4i3vrh3ialx9c9d08wc7d2zisa"; depends=[]; }; - TraMineR = derive2 { name="TraMineR"; version="2.0-8"; sha256="0x4ppghg7rbsj7q4q274vcs6kcwajjbi0s181r5qmzbxf20l8k9r"; depends=[boot cluster Hmisc RColorBrewer]; }; - TraMineRextras = derive2 { name="TraMineRextras"; version="0.4.2"; sha256="1k2s3syx27vma5k0qcfx2579jyaxmx7crizkvz3wplhzdwag7wbk"; depends=[cluster RColorBrewer survival TraMineR]; }; + TraMineR = derive2 { name="TraMineR"; version="2.0-9"; sha256="01sbf5dmy1bp0kqhn9xmf6kwjk3h6cgys28hzr61q4qxq5x0373f"; depends=[boot cluster Hmisc RColorBrewer]; }; + TraMineRextras = derive2 { name="TraMineRextras"; version="0.4.3"; sha256="1dmhq5fk2a7vj8s1cvmm7p9pc77z6m46hh7nqp0vkvm811l16v02"; depends=[cluster RColorBrewer survival TraMineR]; }; TrackReconstruction = derive2 { name="TrackReconstruction"; version="1.1"; sha256="1f2l3nshb6qrhyczw5rxqqzmsjxf0rvv3y78j8d9lv1nnd9kxzq5"; depends=[fields RColorBrewer]; }; Trading = derive2 { name="Trading"; version="1.1"; sha256="1mzqck9n14xp16vflx1sx8lry0wjmx37hqv76ldj21xnk5zbrgil"; depends=[]; }; TrafficBDE = derive2 { name="TrafficBDE"; version="0.1.0"; sha256="1lnh9lbjxaradivnd1dkd2szggjh2r4v7klpyxb862dxsmdxxrqw"; depends=[caret data_table dplyr lubridate neuralnet RCurl zoo]; }; @@ -3928,12 +4085,11 @@ in with self; { TrajDataMining = derive2 { name="TrajDataMining"; version="0.1.6"; sha256="1n5qcyc1kb8rdrqaji7pp63l2gyr6jim8spm8ydb4lnqfcnrin9g"; depends=[geosphere rgdal RPostgreSQL sp spacetime trajectories xts]; }; TransModel = derive2 { name="TransModel"; version="2.1"; sha256="0brlr4w5k8xsgbrizm7ha0cmq0kqzd2fcjpszq7gym844jj93csi"; depends=[MASS survival]; }; TransP = derive2 { name="TransP"; version="0.1"; sha256="0p6pfcp8qjdah0lfhx0a396nxjzp3ckpda9hl3snpppx79iyww55"; depends=[]; }; - TransferEntropy = derive2 { name="TransferEntropy"; version="1.4"; sha256="0620axdj6qyskf7xszrs8j5d2l73ns4bgbdg03fvr8i7jmq70zb8"; depends=[BH Rcpp]; }; TreatmentSelection = derive2 { name="TreatmentSelection"; version="2.1.1"; sha256="1pw64hx697jg2f1r2zd8y98g3ivj2gm8fnixcjfn4drsd0xixb4p"; depends=[binom ggplot2 survival]; }; TreeBUGS = derive2 { name="TreeBUGS"; version="1.4.0"; sha256="0xcipsfwghnf2x2x0i77vr79xs646v354skwxxw6m72ff6arbfz4"; depends=[coda hypergeo logspline MASS Rcpp RcppArmadillo rjags runjags]; }; - TreeDep = derive2 { name="TreeDep"; version="0.1.1"; sha256="0229ip18vbz36ks28p6pja30fb72qcdp7vwi2x0aiymhiigsmirs"; depends=[ggplot2 lubridate]; }; + TreeDep = derive2 { name="TreeDep"; version="0.1.2"; sha256="1li5h44crg7gb8589w6g2c1ms7jpk3x3nq378f66ihwhfdak3zn9"; depends=[ggplot2 lubridate]; }; TreePar = derive2 { name="TreePar"; version="3.3"; sha256="1sm518b1b4b1p0n5979qzvi2nacxpp3znbg9n75pf2a8z8wy6p4l"; depends=[ape deSolve Matrix subplex TreeSim]; }; - TreeSearch = derive2 { name="TreeSearch"; version="0.1.2"; sha256="0q25zw53whp1v57pkc50h2j7jb64jpip00s0qnmvdgncbrs4zhx5"; depends=[ape memoise phangorn R_cache Rdpack]; }; + TreeSearch = derive2 { name="TreeSearch"; version="0.2.0"; sha256="1zn2ig3iq5mfqs5gd31g1smm9vv1q68j1w9wpx4x4yxrwib35ghh"; depends=[ape colorspace gmp memoise phangorn R_cache Rdpack]; }; TreeSim = derive2 { name="TreeSim"; version="2.3"; sha256="1y98m2whpx9kssgklw2d6prs6af9vcn8yva1l7lm1l509py1fn6h"; depends=[ape geiger]; }; TreeSimGM = derive2 { name="TreeSimGM"; version="2.3"; sha256="0qwqvmmdn290llz5hmmx2q24jjmd1bxssrslzv31kzi1yq5h6w0b"; depends=[ape TreeSim]; }; TrendInTrend = derive2 { name="TrendInTrend"; version="1.1.2"; sha256="1kdjrzv2s5vpyg1lx6qkxj3dyi84qwhrvz17mx731f9pp70cz29j"; depends=[pROC rms]; }; @@ -3949,6 +4105,7 @@ in with self; { TukeyRegion = derive2 { name="TukeyRegion"; version="0.1.2"; sha256="03lik9vkah3hjhn0l4ci95v2h4q8mnziq006idipn69l4gmnddxl"; depends=[bfp BH ddalpha MASS Rcpp rgl Rglpk]; }; TunePareto = derive2 { name="TunePareto"; version="2.5"; sha256="0v1ylh4m5s80zp346pxxlvhm5070w83mlzfxjyp4n000c8r2nkf4"; depends=[]; }; TurtleGraphics = derive2 { name="TurtleGraphics"; version="1.0-8"; sha256="0h77pj7rs3lrqi1y2dm1cbrmj13mjpq6y5nw8bcq0s2kbnkfw67l"; depends=[]; }; + Tushare = derive2 { name="Tushare"; version="0.1.0"; sha256="0dcqj1jd9qslr1vn8s6s14nfrxjaxxcl53n87m1wzlqj94czmijq"; depends=[httr]; }; TwoCop = derive2 { name="TwoCop"; version="1.0"; sha256="1ycxq8vbp68z82r2dfg2wkc9zk3bn33d94xay20g2p55lnzl2ifd"; depends=[]; }; TwoPhaseInd = derive2 { name="TwoPhaseInd"; version="1.1.1"; sha256="0xsqiq4x7vmhif9j8zi1smbchwm4fsbgb10i4vxi0biijybizk9z"; depends=[survival]; }; TwoRegression = derive2 { name="TwoRegression"; version="0.1.2"; sha256="0qr9zrfmbh4c4207gvwa384q5njjx6nsl6lc58d25m8bkfalifpi"; depends=[data_table dplyr magrittr seewave]; }; @@ -3956,9 +4113,12 @@ in with self; { UBCRM = derive2 { name="UBCRM"; version="1.0.1"; sha256="1h9f8wlxdgb67qqqnfhd9gfs4l2cq84vajhcb0psva0gwdd1yf6i"; depends=[]; }; UBL = derive2 { name="UBL"; version="0.0.6"; sha256="0238irg7r3g248h4x4bdb308wvfqq99hwykywf4k2bssdd25kwjk"; depends=[automap gstat MBA randomForest sp]; }; UCR_ColumnNames = derive2 { name="UCR.ColumnNames"; version="0.1.0"; sha256="1nwwq93f60r9aik51l7mzckg81f81nz5kgzynyzp5sm4y2wmpzwn"; depends=[]; }; + UCSCXenaTools = derive2 { name="UCSCXenaTools"; version="0.2.5"; sha256="0vgjrmlscq4gcgccbabrcplbi1jyv5nd6zh1j57ys85f0w8mmvrl"; depends=[dplyr DT httr readr shiny shinydashboard]; }; + UKgrid = derive2 { name="UKgrid"; version="0.1.0"; sha256="1xfg2v82264wlvv6x0xppz7g7jka1y0d615g9rwcb236y64h2xrk"; depends=[data_table dplyr lubridate magrittr rlang xts zoo]; }; UNCLES = derive2 { name="UNCLES"; version="2.0"; sha256="0c61sm09dh0yfrjrjjnizg7qrf8xgc1zdldwhjh64kq8k8g5wa69"; depends=[class kohonen pdist]; }; UNF = derive2 { name="UNF"; version="2.0.6"; sha256="0sr740dhfp7z9wvhajww43g5gz79x5y5dbflw5a813jgmiqm1jyq"; depends=[base64enc digest]; }; UPMASK = derive2 { name="UPMASK"; version="1.1"; sha256="1qxajvld8g2mii12agypcm50fps9bai6d2wx6l0bv3srk80in7ai"; depends=[DBI MASS RSQLite]; }; + UPSvarApprox = derive2 { name="UPSvarApprox"; version="0.1.1"; sha256="1lm3xzj70s070ag2sk24nq5ayckk3mnqfmwppbhq5i4y13fw6vip"; depends=[]; }; USAboundaries = derive2 { name="USAboundaries"; version="0.3.1"; sha256="1mqbxkv347307mbvn70929bi3l8wmiwrp86rxdgy45g2ddjdcb6s"; depends=[]; }; USCF = derive2 { name="USCF"; version="0.1.3"; sha256="00ynxfd4lg8g4mspz5izxvgkj27l2i1cnp0z0dnkhsbxsg0161mj"; depends=[]; }; USGSstates2k = derive2 { name="USGSstates2k"; version="1.0.1"; sha256="11yk0pkss23j6fmmxnjkjm9p24ln343y4hijigbrbvcnb21wj2py"; depends=[sp]; }; @@ -3977,30 +4137,35 @@ in with self; { UniDOE = derive2 { name="UniDOE"; version="1.0.2"; sha256="14jz4acrvbv59sbr7gya8g0z749vv0i04gl5wl0y4218byjvw6bs"; depends=[Rcpp]; }; UniIsoRegression = derive2 { name="UniIsoRegression"; version="0.0-0"; sha256="0lmrmb9sbk41ak7sbcrzhfnijb1skgb4lqg9m9imc98lcp69h7z0"; depends=[Rcpp]; }; Unicode = derive2 { name="Unicode"; version="11.0.0-1"; sha256="1rjyz1d7xw9i1pzx0g653ymkr5hjcmri3dl8v0skzq13qc3fag3d"; depends=[]; }; + UnitCircle = derive2 { name="UnitCircle"; version="0.1.3"; sha256="0z5ssps8l5ka4aw4984qml15scw4pfssara5dls82afhfhpkszsr"; depends=[]; }; UnivRNG = derive2 { name="UnivRNG"; version="1.1"; sha256="0vjsqc1y24z7zlclglh55kkxjhy0dc5gjsy427zdv95j58jbxa66"; depends=[]; }; UpSetR = derive2 { name="UpSetR"; version="1.3.3"; sha256="08vj7l92b8fpqyqwxshll2mhk3yhgyr74axvr2lf29z78bapymhz"; depends=[ggplot2 gridExtra plyr scales]; }; UsingR = derive2 { name="UsingR"; version="2.0-6"; sha256="1lr8z45r5s7fxrd42rswm6w7s3k5nds244b9d525jb5v4n8w9kpw"; depends=[HistData Hmisc MASS]; }; V8 = derive2 { name="V8"; version="1.5"; sha256="155389k8laa48akg0bfsz65s4ddmpk0xpi1ha56z1sayv01vrrgc"; depends=[curl jsonlite Rcpp]; }; VAR_etp = derive2 { name="VAR.etp"; version="0.7"; sha256="0py5my3ilhcmz44m15hh0d219l9cz7rda4a9gbmf8wh9cgvvj1s3"; depends=[]; }; - VARSEDIG = derive2 { name="VARSEDIG"; version="1.7"; sha256="1vf0gqf81lbksp9m6yj28wsk5s29fqcfvlymy91hni814dkb1mxw"; depends=[]; }; + VARSEDIG = derive2 { name="VARSEDIG"; version="1.8"; sha256="10qkhi749z2hsywzdri6ari02x3ninprg1hj41fslvr7bjq2hn4z"; depends=[]; }; VARsignR = derive2 { name="VARsignR"; version="0.1.3"; sha256="09mnf9hvsi4wx1c81yq97mzggwk6s7nka7awrws63icjybqjmra9"; depends=[HI minqa mvnfast]; }; VARtests = derive2 { name="VARtests"; version="1.0.1"; sha256="19xmf4mg4v1fwd002ccinfbsbpcq9qfmzc2sf710mqv6i8ghv6jm"; depends=[Rcpp RcppArmadillo sn]; }; - VBLPCM = derive2 { name="VBLPCM"; version="2.4.4"; sha256="09b80313w2dljl009xzcfhdcl6flc8nqzw9pzgfbciwi61666ppb"; depends=[ergm mclust network sna]; }; - VCA = derive2 { name="VCA"; version="1.3.3"; sha256="03ibvn3a6bbgq36a1ibhi4givdnba6d0qcfbpbdxkz5masn1r23q"; depends=[lme4 Matrix numDeriv]; }; + VBLPCM = derive2 { name="VBLPCM"; version="2.4.5"; sha256="1q5n87zzakdv0mflgsy6a5lc25ryjm7h90i3nr0dvccd0l8d4wpm"; depends=[ergm mclust network sna]; }; + VBTree = derive2 { name="VBTree"; version="0.1.0"; sha256="0g0lyvclnfmd3zc8yhcibhli0hyxrba6wb3hx039fsg80q7y02h4"; depends=[tensorA]; }; + VCA = derive2 { name="VCA"; version="1.3.4"; sha256="1qyf20i6bgjg3lxivhx4kgr66m63wkzw8r26aqhz0cs1j0w741dk"; depends=[lme4 Matrix numDeriv]; }; VDA = derive2 { name="VDA"; version="1.3"; sha256="063mpwbyykx4f46wzfvrgnlq73ar7i06gxr4mjzbhqcfrsybi72b"; depends=[rgl]; }; VDAP = derive2 { name="VDAP"; version="2.0.0"; sha256="134x4aisaim72xkyzb1vb8vhl2m4i12yzh6cj858a1ag7b0ing3n"; depends=[drc ggplot2 reshape2 stringr]; }; VDSPCalibration = derive2 { name="VDSPCalibration"; version="1.0"; sha256="1hrmmhvk3mhd3bdl0msnm5shcj4cjgd3pn1rkfkv8fh4llqvz7w8"; depends=[]; }; - VGAM = derive2 { name="VGAM"; version="1.0-5"; sha256="0ik3wyv6jj54bg34z0fzzk4xg0h6x98jqx4q2r7g1f0in0qgbb01"; depends=[]; }; + VFP = derive2 { name="VFP"; version="1.0"; sha256="1gkpqxmxyv1hdaxk5yi3cd1k9q246q5gj9xhfnc87dp60rfg8p8f"; depends=[gnm MASS]; }; + VFS = derive2 { name="VFS"; version="1.0.2"; sha256="1b8sl8id2gj4iqkpjzd3giybbix2jvskwsbw1kqj3zqr77hygxwg"; depends=[e1071 nleqslv]; }; + VGAM = derive2 { name="VGAM"; version="1.0-6"; sha256="1fg31xz86jblqraifiy3q36d0hjqnll01jxx85xq87j1cyhj060j"; depends=[]; }; VGAMdata = derive2 { name="VGAMdata"; version="1.0-3"; sha256="1jicadjaqmys1bbgkp64hmm8wwmi6f734il00v8qjz3jl9b02pkn"; depends=[]; }; VGAMextra = derive2 { name="VGAMextra"; version="0.0-1"; sha256="0rlj4q6ry6v3fnpmg4s33ynn7qzs5m98csap55nyn6r9ynrh5gk5"; depends=[VGAM]; }; VHDClassification = derive2 { name="VHDClassification"; version="0.3"; sha256="1ij4h3gzxb9mm9q743kc3sg2q609mnqz6mhlrbim1wcjji2b7bv4"; depends=[e1071 lattice]; }; + VICmodel = derive2 { name="VICmodel"; version="0.1.1"; sha256="1236llbmrsgb7aiwdmdv2iq203avcsl68dkk652gfm69dwyxv111"; depends=[foreach Rcpp]; }; VIF = derive2 { name="VIF"; version="1.0"; sha256="0yvg6ikrcs7mhg0pavhcywrfysv7ylvnhxpc5sam86dbp69flx9x"; depends=[]; }; VIFCP = derive2 { name="VIFCP"; version="1.2"; sha256="0w41k25vss806m5vpwmmcfsmwaixmln0pliql3a6xlwsihha5i34"; depends=[]; }; VIGoR = derive2 { name="VIGoR"; version="1.0"; sha256="1c24s917aafqy46b3xlsw8v3afs11nd5bq83vlygpgnz1612jpga"; depends=[]; }; VIM = derive2 { name="VIM"; version="4.7.0"; sha256="1vjcs5wvjv94ln01d94h9rs4j50d3ky4n26mm3prgh13raylrmnd"; depends=[car colorspace data_table e1071 laeken MASS nnet Rcpp robustbase sp vcd]; }; VIMGUI = derive2 { name="VIMGUI"; version="0.10.0"; sha256="14na9ss0vkcys979kdcciynwssqsvy2w566nydgzd3n7gcmx2agm"; depends=[Cairo foreign gWidgets gWidgetsRGtk2 Hmisc RGtk2 survey tkrplot VIM]; }; VLF = derive2 { name="VLF"; version="1.0"; sha256="1il8zhm80mc22zj16dpsy4s6s9arj21l9ik0vccyrpnlr8ws3d3l"; depends=[]; }; - VLMC = derive2 { name="VLMC"; version="1.4-1"; sha256="0y91cl9pv1d5s8956grdx3y4xa5l1fabrh1wl5hn11fjgyz1dcij"; depends=[MASS]; }; + VLMC = derive2 { name="VLMC"; version="1.4-2"; sha256="1jlyi0zl6d3zk8mp3rzcsq850ivqcg8296jndrdzmlsrp8mnldrq"; depends=[MASS]; }; VNM = derive2 { name="VNM"; version="7.1"; sha256="19qglcibb7r6jjz0n0piklwfv3hi4jphd6vmyfbm0ccjjkmn5nin"; depends=[Rcpp]; }; VRPM = derive2 { name="VRPM"; version="1.2"; sha256="1cai5a71vzkx0d7cwzsxbcz7r9cdkqjk4l4bp2ffj5pp7nrlh15r"; depends=[fields ggplot2 Hmisc kernlab R2HTML ROCR shiny survival viridis]; }; VSE = derive2 { name="VSE"; version="0.99"; sha256="07m5080nw72b77238v2wwdh4dxsvv6y78d4j1329n90wyj2crxl4"; depends=[car GenomicRanges igraph IRanges]; }; @@ -4008,12 +4173,13 @@ in with self; { VTrack = derive2 { name="VTrack"; version="1.21"; sha256="1acf2b8zy72shc4768rhikfa3590h3l3nwk32jk7pwsms0nb87rf"; depends=[checkmate doParallel foreach gdistance gstat Hmisc intervals lubridate plotKML plyr raster sp spacetime XML]; }; VWPre = derive2 { name="VWPre"; version="1.1.0"; sha256="1ccrim9nx5fmmadg687gz9qrfkyxp48rskg1n2pxfwd3h10c9js1"; depends=[dplyr ggplot2 mgcv rlang shiny tidyr]; }; VaRES = derive2 { name="VaRES"; version="1.0"; sha256="0gw05jiqgirhz3c8skbb07y4h44r6vi68gnd5y7ql455v0c2raza"; depends=[]; }; + VarBundle = derive2 { name="VarBundle"; version="0.3.0"; sha256="0jfx9gkb3f29lgc0nrz3xc7m2ham0scx9lay7x5a6ira7crga6cr"; depends=[crayon dplyr glue magrittr R6 stringr tibble]; }; VarED = derive2 { name="VarED"; version="1.0.0"; sha256="16j9p2a143y4hqclsv1mig0fccrzjx2r0lll0wz8isjp9x1wzjv8"; depends=[]; }; VarReg = derive2 { name="VarReg"; version="1.0.2"; sha256="04235hr0r6sp7r3ccvcfb8l6p8yapcdrn6zl7mmvbyc4qb70gawh"; depends=[sn survival]; }; - VarSelLCM = derive2 { name="VarSelLCM"; version="2.1.2"; sha256="0ilkn40b7845y3nlli160i6fmfaw2p1hvd97q2hnpvscrgmdqvz3"; depends=[ggplot2 mgcv Rcpp RcppArmadillo shiny]; }; + VarSelLCM = derive2 { name="VarSelLCM"; version="2.1.3"; sha256="07ss4wxw1q1mvf6y860zcl5ja65f5yaqpgqj1k1yi5smqj50y0jk"; depends=[ggplot2 mgcv Rcpp RcppArmadillo shiny]; }; VarSwapPrice = derive2 { name="VarSwapPrice"; version="1.0"; sha256="12q2wp2cqi9q47mzbb7sc250zkjqkhs9z0h93ik0h63dv339abgj"; depends=[]; }; - VarfromPDB = derive2 { name="VarfromPDB"; version="2.2.7"; sha256="1sb31338r2p0jsa3k72q9lc5f57cybywmda7q2j8byngh1fjvgyz"; depends=[curl RISmed stringi stringr XML XML2R]; }; - VariableScreening = derive2 { name="VariableScreening"; version="0.1.1"; sha256="03l929qhgr1bd721488xx0il1hlswv3zdad518ki94ghq9c4nmg3"; depends=[expm gee MASS]; }; + VarfromPDB = derive2 { name="VarfromPDB"; version="2.2.10"; sha256="09j8y6n0bwsj3n620nbni6b7f4pmb91q41770sfpc5v3l5i3jc7c"; depends=[curl RISmed stringi stringr XML XML2R]; }; + VariableScreening = derive2 { name="VariableScreening"; version="0.2.0"; sha256="04j75081g88g5hjydcnl3jcf99zzbrhlbjmmzcprvrlm5i5i3k93"; depends=[energy expm gee MASS]; }; VarianceGamma = derive2 { name="VarianceGamma"; version="0.3-1"; sha256="0h424hdphbgi9i84bgzdwmsq05w61q8300x8f9y4szbxa5k2dnar"; depends=[DistributionUtils GeneralizedHyperbolic RUnit]; }; VdgRsm = derive2 { name="VdgRsm"; version="1.5"; sha256="13mbv3ih6p2915wdzq4zjx7m4k37w1xddkxx6dzk1jiak2br9slj"; depends=[AlgDesign permute]; }; Vdgraph = derive2 { name="Vdgraph"; version="2.2-2"; sha256="1q8l711zbrrj4h1wmpv93nbvlg8xi6kjv22zpidkck8ncpyyla80"; depends=[]; }; @@ -4024,7 +4190,7 @@ in with self; { VertexSort = derive2 { name="VertexSort"; version="0.1-1"; sha256="0n9m5l85ylin6756rsksak94nv0626qd7czhhj6plz4nfrr27sgl"; depends=[igraph snowfall]; }; VeryLargeIntegers = derive2 { name="VeryLargeIntegers"; version="0.1.6"; sha256="1ccl4j3vb6aw1qfbqil67dy74daldajwzm7s5hqcidm73fd0wknc"; depends=[Rcpp]; }; VetResearchLMM = derive2 { name="VetResearchLMM"; version="1.0.0"; sha256="1a7wm04bsr5shak7l8ypxlhlnx3qkq1jdpjnji1n05p6b00ih9h1"; depends=[ggplot2 lme4 lmerTest multcomp nlme]; }; - VineCopula = derive2 { name="VineCopula"; version="2.1.6"; sha256="0gppfjffz5vc35rfjjplwjfp2vpw8hmfc0257k33qki46g5haw5j"; depends=[ADGofTest copula doParallel foreach kdecopula lattice MASS mvtnorm network]; }; + VineCopula = derive2 { name="VineCopula"; version="2.1.8"; sha256="1sdj6561ya7px4bp4kq23ggjf1bmis465zpnwn0i650z3q6y7al7"; depends=[ADGofTest copula doParallel foreach kdecopula lattice MASS mvtnorm network]; }; VisuClust = derive2 { name="VisuClust"; version="1.2"; sha256="0hnjmrz352950rzky88q4nwvkx7zp6x3lsm7kff5dl4w05iq4wsl"; depends=[aplpack]; }; VizOR = derive2 { name="VizOR"; version="0.8-5"; sha256="1v76m67xdlg06w3dmp27mh3mv3lfqy6bd1iq907dynp2g4qf4ww0"; depends=[lattice rms]; }; Voss = derive2 { name="Voss"; version="0.1-4"; sha256="056izh1j26vqjhjh01fr7nwiz1l6vwr5z4fll87w99nc5wc4a467"; depends=[fields]; }; @@ -4033,22 +4199,22 @@ in with self; { W3CMarkupValidator = derive2 { name="W3CMarkupValidator"; version="0.1-6"; sha256="0nfay5nqss3zlw4nikj8h3zzlnjfxjch4pm3qky15qrcigrybrbl"; depends=[curl xml2]; }; WACS = derive2 { name="WACS"; version="1.0"; sha256="1x6vn7xhrnaggrxkvap6si8gz7b6z2zpjpbb9zgag4vyq3s7nxgy"; depends=[mclust mnormt mvtnorm tmvtnorm]; }; WARN = derive2 { name="WARN"; version="1.2-3"; sha256="0vkp70cc3slz9y8qfybrqyjyglsxz9fnqrid735h2a113h4xvr3v"; depends=[MASS]; }; - WCE = derive2 { name="WCE"; version="1.0.1"; sha256="0zp9xcq40vy2pv06rqn4d24bracm2vd3yyq4h56qppx47419fmm4"; depends=[plyr survival]; }; + WCE = derive2 { name="WCE"; version="1.0.2"; sha256="105pwpd9ikm0gwz4r12jl6cgs1riwsk9pn5qk9cn3msgwa0sdynx"; depends=[plyr survival]; }; WCQ = derive2 { name="WCQ"; version="0.2"; sha256="1yhkr2iazd7lh9r68xz1lh32z6r1sdnmqrjshcrm4rbwai0j3lkr"; depends=[]; }; WDI = derive2 { name="WDI"; version="2.5"; sha256="0wm3b844pn33047wfd8yp22c6ysdsi8qx71fm1h5rq5vm9mcg9cp"; depends=[RJSONIO]; }; WEE = derive2 { name="WEE"; version="1.0"; sha256="0i3h67p72lr708mwdw3rbzr1lqqr8n2dxv7f0bwyqzxv41sx1iz3"; depends=[doParallel foreach quantreg]; }; - WGCNA = derive2 { name="WGCNA"; version="1.63"; sha256="1225dqm68bynkmklnsxdqdd3zqrpzbvqwyly8ibxmk75z33xz309"; depends=[AnnotationDbi doParallel dynamicTreeCut fastcluster foreach GO_db Hmisc impute matrixStats preprocessCore Rcpp robust survival]; }; + WGCNA = derive2 { name="WGCNA"; version="1.66"; sha256="0rhnyhzfn93yp24jz9v6dzrmyizwzdw070a7idm0k33w1cm8sjqv"; depends=[AnnotationDbi doParallel dynamicTreeCut fastcluster foreach GO_db Hmisc impute matrixStats preprocessCore Rcpp robust survival]; }; WHO = derive2 { name="WHO"; version="0.2"; sha256="0rpk7ddpkjcqs0m7cgxs55k178js0d70ccfximp2vqrsw0igkmk9"; depends=[dplyr httr]; }; WLreg = derive2 { name="WLreg"; version="1.0.0"; sha256="0paghjcshhrr6y1gm98d6gr78zvgzhl678g9f96hppfa4q3lfpr7"; depends=[inline survival]; }; WMCapacity = derive2 { name="WMCapacity"; version="0.9.6.7"; sha256="167wx759xi7rv74n6sdsdkjnfpxdsiybk4ik70psdgfwdqqcga1y"; depends=[cairoDevice coda gtools gWidgets gWidgetsRGtk2 RGtk2 XML]; }; WMDB = derive2 { name="WMDB"; version="1.0"; sha256="10wdjy3g2qg975yf1dhy09w9b8rs3w6iszhbzqx9igfqvi8isrr1"; depends=[]; }; - WMWssp = derive2 { name="WMWssp"; version="0.3.2"; sha256="019fcmf5zmbm20zyvx96nwp66lqm2xw7hbpacfwn8cvw3dq85chr"; depends=[rankFD]; }; + WMWssp = derive2 { name="WMWssp"; version="0.3.4"; sha256="00kjddiy9sjfhnixj9p8v8sd389c1cm5j4rz4gar84mgmbc520gg"; depends=[rankFD]; }; WPC = derive2 { name="WPC"; version="1.0"; sha256="0li502hwa4n945yfnilslyvl12ls66kazbfmxb4kkjbaf500mjp9"; depends=[msm survival]; }; WPKDE = derive2 { name="WPKDE"; version="0.1"; sha256="100vla11fbw16x5n4w4kbslz4n725v4x6j0hrxzrk99ryl0crmf6"; depends=[]; }; WRS2 = derive2 { name="WRS2"; version="0.10-0"; sha256="17iriwkng75iy93mp99ihzmvgpgbrg0sgwxs2yx1d3ss7h0k1x3j"; depends=[MASS mc2d plyr reshape]; }; WRSS = derive2 { name="WRSS"; version="1.4"; sha256="1fkbrk9s3jn7qfv5jvzcgjf0jwbxi8dr7485msxj3najbhqd2qy5"; depends=[GGally ggplot2 Hmisc network]; }; - WRTDStidal = derive2 { name="WRTDStidal"; version="1.1.0"; sha256="0yyhls0qzwwj4sz5d1nvzfiacx28dmf2hgjc7xgfi2qjkckg40hs"; depends=[caret dplyr EnvStats fields foreach forecast ggplot2 gridExtra lubridate purrr quantreg RColorBrewer survival tidyr]; }; - WVPlots = derive2 { name="WVPlots"; version="1.0.0"; sha256="16wazxf4c1awxfix4dmp1zcwrfwbkddck71gxgimf471gx60hl8p"; depends=[cdata ggplot2 gridExtra mgcv sigr wrapr]; }; + WRTDStidal = derive2 { name="WRTDStidal"; version="1.1.1"; sha256="0q2rdzbz3cbgr19sh9j3fqdn0lvwrq93qq2rjmnhx6ia9avkywa8"; depends=[caret dplyr fields foreach forecast ggplot2 gridExtra lubridate purrr quantreg RColorBrewer survival tidyr]; }; + WVPlots = derive2 { name="WVPlots"; version="1.0.5"; sha256="0fp298n1dmsy5hs90aki7aprvybpikp3v8niwlnz7k3f2k2g9dl7"; depends=[cdata ggplot2 gridExtra mgcv sigr wrapr]; }; WWGbook = derive2 { name="WWGbook"; version="1.0.1"; sha256="0q8lnd1fp4rmz715x0lf61py3xw8wg55yq3gvswaqwy68dlqrzjc"; depends=[]; }; WWR = derive2 { name="WWR"; version="1.2.2"; sha256="0ia1dd12r1l08s9nhgvk55jmqwv58jawm25gd2ni6wpa3mcmq02g"; depends=[inline]; }; WaterML = derive2 { name="WaterML"; version="1.7.1"; sha256="0aqcanq2l3m9w1kglmkbqshs80wx9inmjp0c1i2j901g4k35ss5j"; depends=[httr RJSONIO XML]; }; @@ -4058,14 +4224,15 @@ in with self; { WaveletArima = derive2 { name="WaveletArima"; version="0.1.1"; sha256="19hz2q280m41qh3m9lx3i9p6p5fl6pw8r9b06xk6sn04hxbim8xx"; depends=[forecast fracdiff wavelets]; }; WaveletComp = derive2 { name="WaveletComp"; version="1.1"; sha256="07w2aa0jiflvxyqhgh48705hg8hjspd103jd00i2pcw2v42hwmf8"; depends=[]; }; WaverR = derive2 { name="WaverR"; version="1.0"; sha256="084fhzggzm075w6wp2lqd3j0an21idhw8z5l8ynz4y96mpmn204a"; depends=[kimisc MASS]; }; - WeMix = derive2 { name="WeMix"; version="1.0.2"; sha256="1wj1jxw65i94xf5zk9phgkwybvl2h05ynq0zhdc7q3j6b90mv9hn"; depends=[lme4 MASS minqa NPflow numDeriv Rcpp RcppArmadillo Rmpfr statmod]; }; + WeMix = derive2 { name="WeMix"; version="2.1.0"; sha256="0bnj4iziclmvqxzb51sjvs0mlk9glkg5yvcvh349m8cvv2634dsb"; depends=[lme4 NPflow numDeriv Rcpp RcppArmadillo Rmpfr statmod]; }; WebGestaltR = derive2 { name="WebGestaltR"; version="0.1.1"; sha256="0cdpfwp4whx8pff73acxga072lwbibl44hxdjs9jsb5i21h55vbr"; depends=[data_table doParallel foreach pkgmaker PythonInR rjson]; }; WebPower = derive2 { name="WebPower"; version="0.5"; sha256="184wig66bcg7vsppaijq5jpq2hffl3bhshdx4ilz5hw98mimxg13"; depends=[lavaan lme4 MASS PearsonDS]; }; - WeibullR = derive2 { name="WeibullR"; version="1.0.9"; sha256="13qkfnfp2pbvb78mj7fg8cgjnbrxv6dbms70wvn9f3mc70djmrb3"; depends=[Rcpp RcppArmadillo]; }; + WeibullR = derive2 { name="WeibullR"; version="1.0.10"; sha256="1h2w1rgap9yjns7cby0559jwzzwhzjq1h6lwsawrfnni7c36iliq"; depends=[Rcpp RcppArmadillo]; }; WeightIt = derive2 { name="WeightIt"; version="0.4.0"; sha256="1y0910wa1lx2jrbnzk9099v64skh7sm8cx85g62ikgcj291z6c8c"; depends=[cobalt]; }; Weighted_Desc_Stat = derive2 { name="Weighted.Desc.Stat"; version="1.0"; sha256="030i12mnwlj976avvk3grrccgprsckmc35dm2ajwdfc9dijhypnj"; depends=[]; }; WeightedCluster = derive2 { name="WeightedCluster"; version="1.2-1"; sha256="04gsr65mssv4cz4v8sh44qhyzn0isll057d45z4ljv6sx0an5yhl"; depends=[cluster RColorBrewer TraMineR]; }; WeightedPortTest = derive2 { name="WeightedPortTest"; version="1.0"; sha256="007v3w9ssiv2sds7sikpal27g6pxwxhs7bvcyw6kr0vg8gvlbi8h"; depends=[]; }; + WeightedROC = derive2 { name="WeightedROC"; version="2018.10.1"; sha256="1hdksd47pkky83g6hn6123f243yw3bzrlaibdgr2kd5kxn9rma3y"; depends=[]; }; WhatIf = derive2 { name="WhatIf"; version="1.5-9"; sha256="0ihpp3wbhpsg00g0s31l0ca4q0a2sch2a2j8cgz14g8na43x8831"; depends=[lpSolve pbmcapply Zelig]; }; WhiteStripe = derive2 { name="WhiteStripe"; version="2.3.1"; sha256="1qyv06ai83b1idfg4bgr97askyzlwi2dv8d5wkivb5czp7crdri1"; depends=[mgcv oro_nifti]; }; WhopGenome = derive2 { name="WhopGenome"; version="0.9.7"; sha256="1xa7d9x5ny8g79scfkv7v5ix9m3mfzg0fks2bsan9zqyhcd01fsq"; depends=[]; }; @@ -4078,18 +4245,18 @@ in with self; { WilcoxCV = derive2 { name="WilcoxCV"; version="1.0-2"; sha256="1kbb7ikgnlxybmvqrbn4cd8xnqrkwipk4xd6yja1xsi39a109xzl"; depends=[]; }; WindCurves = derive2 { name="WindCurves"; version="0.1.3"; sha256="0bvbnrkdk0g0radgcw4zbhq6czpvq3f7f34x83qk09i8ngmwd28c"; depends=[drc imputeTestbench readbitmap]; }; WordPools = derive2 { name="WordPools"; version="1.0-2"; sha256="1izs4cymf2xy1lax85rvsgsgi05ygf0ibi9gzxc96sbgvy4m78kf"; depends=[]; }; - WordR = derive2 { name="WordR"; version="0.3.0"; sha256="0wfgr5jg0vn58cn2dra3s46c5x5msqw3p666lbhhs48m75j12daq"; depends=[dplyr flextable officer]; }; + WordR = derive2 { name="WordR"; version="0.3.1"; sha256="17g8v3xhdy57y0b95zrakhi0zamqi35v0zcmjpy47xyqyk4b2grs"; depends=[dplyr flextable officer]; }; Wrapped = derive2 { name="Wrapped"; version="2.0"; sha256="1z5kypsd39z9arsw57axckvl8b4jnr5wv60s9z58f5s89gn5vxxg"; depends=[AdequacyModel ald cubfits evd fBasics gamlss_dist GeneralizedHyperbolic GEVStableGarch glogis irtProb LCA lqmm metRology NormalLaplace normalp ordinal sgt SkewHyperbolic sld sn VarianceGamma VGAM]; }; WrightMap = derive2 { name="WrightMap"; version="1.2.1"; sha256="16zp7h28fap5hq5xzvkb4lc217yhfmwzfbvw2lsni0gf9qxqkgqd"; depends=[]; }; WriteXLS = derive2 { name="WriteXLS"; version="4.0.0"; sha256="0nwxi36w3rkzw9j0qil64gakhb101rxg1wydjkwlpg0nbsj1sm50"; depends=[]; }; WufooR = derive2 { name="WufooR"; version="0.8"; sha256="0nwf66y1jb7dw4yhkdl9g4brh59ky4q4x6j9zbqdn70pcj9hq9jx"; depends=[dplyr httr jsonlite]; }; XBRL = derive2 { name="XBRL"; version="0.99.18"; sha256="1bwvxqbxdf1ynz2bv27l86h05h8y19q2li2y79xk819p5nkxq341"; depends=[Rcpp]; }; - XGR = derive2 { name="XGR"; version="1.1.3"; sha256="01czagfjx5w212l5h29klrrsg0qiprlsiwpz7pfqh44haifnq4pz"; depends=[BiocGenerics dnet dplyr GenomicRanges ggnetwork ggplot2 ggrepel igraph IRanges Matrix plot3D RCircos rtracklayer S4Vectors supraHex tidyr XML]; }; + XGR = derive2 { name="XGR"; version="1.1.4"; sha256="0npyfq587wg2qz2n0f8gmnq396h3xil20navbgfy7dbkvfncv3f0"; depends=[BiocGenerics dnet dplyr GenomicRanges ggnetwork ggplot2 ggrepel igraph IRanges Matrix plot3D RCircos rtracklayer S4Vectors supraHex tidyr XML]; }; XHWE = derive2 { name="XHWE"; version="1.0"; sha256="1ca8y9q3623d0vn91g62nrqf3pkbcbkpclmddw5byd37sdrgsi5l"; depends=[]; }; XKCDdata = derive2 { name="XKCDdata"; version="0.1.0"; sha256="1lx9frlbc549qrh4d3m79r3l9icfzqkgfgp8raa8x46a2havi0a5"; depends=[assertthat dplyr glue htmltools httr jsonlite magrittr tibble]; }; XLConnect = derive2 { name="XLConnect"; version="0.2-15"; sha256="1cvq677m09gwpwhj3fy15mbfn0s0b1y35w95pjnijiwpcpdxiq96"; depends=[rJava XLConnectJars]; }; XLConnectJars = derive2 { name="XLConnectJars"; version="0.2-15"; sha256="1ipqyjgsh5a1ygsbhyqxyj9wfjv1f73cyfrpx6jvf0is5jklhvxx"; depends=[rJava]; }; - XML = derive2 { name="XML"; version="3.98-1.11"; sha256="18izvlg2x9mzr6yb3yf02ghwbyn00frki3av4lpc44r22m4djnsh"; depends=[]; }; + XML = derive2 { name="XML"; version="3.98-1.16"; sha256="0nl1kk354r8snhj6p9mc74m7awvqc6akmd4y3a46y78yv3g15njp"; depends=[]; }; XML2R = derive2 { name="XML2R"; version="0.0.6"; sha256="0azfh950r2b7ck3n1vzk3mdll7zy844nx3mbk676jxnj8gg7nxk5"; depends=[plyr RCurl XML]; }; XMRF = derive2 { name="XMRF"; version="1.0"; sha256="0jnyy9pcksfadznidqsbwh8nlqv3k0yppj76q8a2g0aidbdmg2cc"; depends=[glmnet igraph MASS Matrix snowfall]; }; XNomial = derive2 { name="XNomial"; version="1.0.4"; sha256="1mwx302576rmsjllbq2clfxilm3hkyp5bw0wmwqbn0kgv5wpy8z6"; depends=[]; }; @@ -4107,7 +4274,7 @@ in with self; { YuGene = derive2 { name="YuGene"; version="1.1.6"; sha256="1kv9n82wrms0c4y5fz9ckzhm1a609mnqp0pwvd0fpyscp8krmlpp"; depends=[mixOmics]; }; ZIBBSeqDiscovery = derive2 { name="ZIBBSeqDiscovery"; version="1.0"; sha256="12g9rga9z6318ni6x6q9hdqlgl93y2xn8vf3gc6sm97fz8pliswx"; depends=[mcc]; }; ZIBseq = derive2 { name="ZIBseq"; version="1.2"; sha256="13rjy4jl9wil6hhpra4qmdis0iyqxchzsf9l7q6r0dz1f7dpd2nq"; depends=[gamlss gamlss_dist nlme]; }; - ZIM = derive2 { name="ZIM"; version="1.0.3"; sha256="1497ki0pr0x21fz5wa2z6zgb2br99z56gvfxyn9cglqq45if6cjh"; depends=[MASS]; }; + ZIM = derive2 { name="ZIM"; version="1.1.0"; sha256="0scyfjn4ilsvha3x41c3b8bcfi31hlhwm77wn2a8hj5dsvnnmzig"; depends=[MASS]; }; ZOIP = derive2 { name="ZOIP"; version="0.1"; sha256="0fraxzr2mfd7w705j2fryhh9vpg6nkag6kmk7p7in3zknxwipfh3"; depends=[boot GHQp numDeriv rmutil]; }; ZRA = derive2 { name="ZRA"; version="0.2"; sha256="1sx1q5yf68hhlb5j1hicpj594rmgajqr25llg7ax416j0m2rnagi"; depends=[dygraphs forecast]; }; ZeBook = derive2 { name="ZeBook"; version="1.0"; sha256="06dg3jk37y64mdcb8hpxgj8rclgxqm96dalm7y5zjb7nrj9jfydk"; depends=[deSolve triangle]; }; @@ -4115,6 +4282,7 @@ in with self; { ZeligChoice = derive2 { name="ZeligChoice"; version="0.9-6"; sha256="1whfwc42lsi54xfr423h6jwbvpj6yjyyf0854k1f1ms13liahm8w"; depends=[dplyr Formula jsonlite MASS VGAM Zelig]; }; ZeligEI = derive2 { name="ZeligEI"; version="0.1-2"; sha256="0kilzfqmm6a41mmjvlynh3rnj30fqiq8gsja28fzwpf0lbl89slg"; depends=[dplyr ei eiPack Formula jsonlite MASS MCMCpack Zelig]; }; ZillowR = derive2 { name="ZillowR"; version="0.1.0"; sha256="1wrr58p76ps29fqzzwgfvfibxrvc72p2yzs5kc2rv1yxzzcpyxvb"; depends=[RCurl XML]; }; + ZipRadius = derive2 { name="ZipRadius"; version="1.0.1"; sha256="00q4a2bsajs5ns4vdm289iaj9mczxjn3ssyrnmg2z4wicr2ljizv"; depends=[dplyr geosphere ggplot2 magrittr rlang testthat]; }; Zseq = derive2 { name="Zseq"; version="0.2.0"; sha256="06dndi2b1q79bmxax11bv0l5ifcz1mhpvbn90y6a6xymrgcq0ivi"; depends=[gmp]; }; aCRM = derive2 { name="aCRM"; version="0.1.1"; sha256="0kzp568hd9c9a9qgniia5s5gv0q5f89xfvvwpzb197gqhs3x092v"; depends=[ada dummies kernelFactory randomForest]; }; aLFQ = derive2 { name="aLFQ"; version="1.3.4"; sha256="1q2l5cwkcsng22nxckgc7aalvy3qhvgga5nkchfpy53sxg68awqv"; depends=[bio3d caret data_table lattice plyr protiq randomForest reshape2 ROCR seqinr]; }; @@ -4130,23 +4298,23 @@ in with self; { abc_data = derive2 { name="abc.data"; version="1.0"; sha256="1bv1n68ah714ws58cf285n2s2v5vn7382lfjca4jxph57lyg8hmj"; depends=[]; }; abcdeFBA = derive2 { name="abcdeFBA"; version="0.4"; sha256="1rxjripy8v6bxi25vdfjnbk24zkmf752qbl73cin6nvnqflwxkx4"; depends=[corrplot lattice rgl Rglpk]; }; abcrf = derive2 { name="abcrf"; version="1.7.1"; sha256="06vy3inikrr9hv36q4djhrgzi9zizdfnhz17wpra8kadmr7qj441"; depends=[MASS matrixStats ranger Rcpp RcppArmadillo readr stringr]; }; - abctools = derive2 { name="abctools"; version="1.1.1"; sha256="0x6pjdvn5z510j42byddzdvg2mgv81yy72snia5k8h7bs9k5glfg"; depends=[abc abind Hmisc plyr]; }; + abctools = derive2 { name="abctools"; version="1.1.3"; sha256="07s9dg10i8lsxl73b4n2hynca2fjgb0ykb0dz8c3zv6cgw3cyx97"; depends=[abc abind Hmisc plyr]; }; abd = derive2 { name="abd"; version="0.2-8"; sha256="191gspqzdv573vaw624ri0f5cm6v4j524bjs74d4a1hn3kn6r9b7"; depends=[lattice mosaic nlme]; }; abe = derive2 { name="abe"; version="3.0.1"; sha256="1f19h3xzzmjhvwc1rrb8z0rai3ip03y4gdi2gg9bfr5sg2nfklk6"; depends=[]; }; abf2 = derive2 { name="abf2"; version="0.7-1"; sha256="0d65mc1w4pbiv7xaqzdlw1bfsxf25587rv597hh41vs0j0zlfpxx"; depends=[]; }; abind = derive2 { name="abind"; version="1.4-5"; sha256="0b1zd8jbnl6l292cr9rb50m09fy3ylxvzkpgi5lfb1nbzddcwfis"; depends=[]; }; abjutils = derive2 { name="abjutils"; version="0.2.1"; sha256="0qrsc4if7aif73qp95lw6b5986c2r0jn7m39123zij8k15vc935b"; depends=[devtools dplyr glue httr magrittr plyr progress purrr rstudioapi scales stringi stringr tibble tidyr]; }; - abn = derive2 { name="abn"; version="1.0.2"; sha256="0jxpw5mplnpc57jjg9w3zrik40g7va6s8m9zbfsyf0vqn645wfwq"; depends=[Cairo]; }; + abn = derive2 { name="abn"; version="1.2"; sha256="00k0razgdb5y5f62622fm7rxkcxrxg470nyyb02dvpfp60254kvs"; depends=[Cairo lme4 MASS nnet Rcpp RcppArmadillo rjags]; }; abnormality = derive2 { name="abnormality"; version="0.1.0"; sha256="1fzfskl9akl06nliy8hkv2a0pznpj8pwcypg3gj5r2nzvr3kan9v"; depends=[MASS Matrix]; }; abodOutlier = derive2 { name="abodOutlier"; version="0.1"; sha256="1pvhgxmh23br84r0fbmv7g53z2427birdja96a67vqgz18r3fdvj"; depends=[cluster]; }; abundant = derive2 { name="abundant"; version="1.1"; sha256="1m76qdmqvwpgm0sihazi2dna7cgsz9rljal18vgffb5wamwmg9k7"; depends=[QUIC]; }; acc = derive2 { name="acc"; version="1.3.3"; sha256="1ii2vm47djxbixa75h690q1s2f9m9x6i8nkygik93j6dayr6kr1m"; depends=[circlize DBI ggplot2 iterators mhsmm nleqslv PhysicalActivity plyr R_utils Rcpp RcppArmadillo RSQLite zoo]; }; accSDA = derive2 { name="accSDA"; version="1.0.0"; sha256="0sgxy5y8kkc1n35657kifwfjsba7y5m1vbr7rkk5lmbpkzahqm61"; depends=[ggplot2 ggthemes gridExtra MASS rARPACK sparseLDA]; }; - accelerometry = derive2 { name="accelerometry"; version="2.2.5"; sha256="00mn09j7y39sc7h5srnnfk2l73vhh6zq7rzc0vckfvs72lncmwv5"; depends=[Rcpp]; }; + accelerometry = derive2 { name="accelerometry"; version="3.1.2"; sha256="13xzrwhr4i1nj9c8vrmfdg2rmrc8n446iihcyxmy99sm99hpzyip"; depends=[dvmisc Rcpp]; }; accelmissing = derive2 { name="accelmissing"; version="1.4"; sha256="1nql9inx6azdzi3z4sfm2vdml2mms6krl8wzlf1dn1c97ahn57fy"; depends=[mice pscl]; }; accrual = derive2 { name="accrual"; version="1.3"; sha256="11clm9s5c5518nmp6hd6pjnp0s28y92b2i2x0xgj4j5g816p4j3z"; depends=[fgui SMPracticals tcltk2]; }; accrued = derive2 { name="accrued"; version="1.4.1"; sha256="05g1jb5914z18rcai1ahn7nihn27vr2rnadwv94gc1j7ivvikvs5"; depends=[]; }; - acebayes = derive2 { name="acebayes"; version="1.5"; sha256="0533f9c44lq57cyar05z3ikg091h1pyrq84h2zghjyp66drnw6pa"; depends=[compare lhs randtoolbox Rcpp RcppArmadillo]; }; + acebayes = derive2 { name="acebayes"; version="1.5.1"; sha256="1rhc8vib7y1nf4m5i21bsvfqmccfqv2ghlfa8vhx8dik6m733zn9"; depends=[compare lhs randtoolbox Rcpp RcppArmadillo]; }; acepack = derive2 { name="acepack"; version="1.4.1"; sha256="1f98rpfjmhd92rdc3j004plyfpjailz6j0ycysbac0kgj83haxc2"; depends=[]; }; acid = derive2 { name="acid"; version="1.1"; sha256="030i0y8s283ivbsmjccpbv9v7mgbcg2jk9df7vgcbbns74swf9hd"; depends=[gamlss gamlss_dist Hmisc]; }; acm4r = derive2 { name="acm4r"; version="1.0"; sha256="1wqzc35i1rshx0zlmas8y4qkkvy6h9r4i4apscjjv1xg2wjflzxa"; depends=[MASS]; }; @@ -4167,39 +4335,41 @@ in with self; { adagio = derive2 { name="adagio"; version="0.7.1"; sha256="1h9l0ddrxq8y35iy9hdkxdvdwsqpnpkzzbkbwwhm4380lq1m7a3k"; depends=[]; }; adapr = derive2 { name="adapr"; version="2.0.0"; sha256="1s57jdbi5pik56xjz1d4438ax6cywg2yq2s47h5g6wrwvpgr1qfw"; depends=[archivist devtools digest doParallel gdata ggplot2 git2r igraph knitr plotly plyr rmarkdown shiny shinydashboard versions]; }; adaptMCMC = derive2 { name="adaptMCMC"; version="1.3"; sha256="08v11rl0p4w94knb0yzs1ysj42xillya62yaw3zm40d4pqv7vcky"; depends=[coda Matrix]; }; + adaptMT = derive2 { name="adaptMT"; version="1.0.0"; sha256="1yllz1zd4cryf5bj8b2lcrj6zl79yjkllyh9p02ikryy5qmg419b"; depends=[]; }; adaptTest = derive2 { name="adaptTest"; version="1.0"; sha256="08d7a5dlzhaj236jvaw3c91008l66vf5i4k5anhcs32a3j8yh2iv"; depends=[lattice]; }; adaptalint = derive2 { name="adaptalint"; version="0.2.3"; sha256="0n047zibp3jsw8d3c971xnqgl8nsqxzcayic0xkz917pwlfrdnd7"; depends=[dplyr lintr purrr]; }; adaptiveGPCA = derive2 { name="adaptiveGPCA"; version="0.1.2"; sha256="0bb6hw77dfa66b12xyazlp992gwjb1plylixlmq4cv4yjhnl9n5z"; depends=[ape ggplot2 phyloseq shiny]; }; adaptivetau = derive2 { name="adaptivetau"; version="2.2-1"; sha256="1hd2l1jv4i5mg0k0g8bbrvv43nk1zxbwh21594zayrzjyikb2593"; depends=[]; }; adaptsmoFMRI = derive2 { name="adaptsmoFMRI"; version="1.1"; sha256="1h79gh1bd6s2xhwf4whh72wf2cz4di2p8dnlf6192mfg108qc6nw"; depends=[coda Matrix MCMCpack mvtnorm spatstat]; }; - addhaz = derive2 { name="addhaz"; version="0.4"; sha256="0i3czmv538m8s3pnxrhh2a1mrdv9m3hgzjkb25p7hygwnzz54drg"; depends=[boot MASS Matrix]; }; + addhaz = derive2 { name="addhaz"; version="0.5"; sha256="1709jq9rp5lhqk0qpk8zkdwzhcv1bcach8mm7yiz7hzcc1mgxb12"; depends=[boot MASS Matrix]; }; addhazard = derive2 { name="addhazard"; version="1.1.0"; sha256="0hk7br52wjmq605xgslv8lspr35aqpdgkiz2yljz31khy3y3vi8c"; depends=[ahaz rootSolve survival]; }; addinslist = derive2 { name="addinslist"; version="0.2"; sha256="04jqhdy0axs1a9c0cfi3pqy9hd67jqxz79a2lj209gd27qv1q22c"; depends=[curl devtools DT miniUI rappdirs rmarkdown rvest shiny shinyjs xml2]; }; additiveDEA = derive2 { name="additiveDEA"; version="1.1"; sha256="15nxpdybsda6yhjk23bpafr8v1zdx8332pcxf26k795q3ypjpiy2"; depends=[Benchmarking lpSolveAPI]; }; additivityTests = derive2 { name="additivityTests"; version="1.1-4"; sha256="048ds90wqjdjy1nyhna3m06asdklbh8sx1n556kss2j1r1pma1sw"; depends=[]; }; addreg = derive2 { name="addreg"; version="3.0"; sha256="13bwmgxylwi02g60j1rr51cr5jvvkl2nvf2lnnhnq46fhvs2ma7s"; depends=[combinat glm2 turboEM]; }; - ade4 = derive2 { name="ade4"; version="1.7-11"; sha256="0wm54wcpn87rdh6vyw04cr8vgba899y6jsl61f22bmlvx6d7kkac"; depends=[MASS]; }; + ade4 = derive2 { name="ade4"; version="1.7-13"; sha256="16z9jk4qj35ghsk4lwmq241dgc770y8a70dlmp9q4gz6d8ssgl7m"; depends=[MASS]; }; ade4TkGUI = derive2 { name="ade4TkGUI"; version="0.2-9"; sha256="0kfnikkzhyfxskrphr65b8amjhdfq35x6dda4kivdhn7ak07s3ll"; depends=[ade4 adegraphics lattice tkrplot]; }; adeba = derive2 { name="adeba"; version="1.1.2"; sha256="1z1law3qh6l902g62y8yapk4nypdmb20jmpwhxp9jbglalw9lm73"; depends=[mixtools pdist Rcpp]; }; adegenet = derive2 { name="adegenet"; version="2.1.1"; sha256="0ynfblp0hbd3dp3k86fn1wyhqr28lk6hs2bg4q7gyf0sfdfzwhrh"; depends=[ade4 ape boot dplyr ggplot2 igraph MASS reshape2 seqinr shiny spdep vegan]; }; - adegraphics = derive2 { name="adegraphics"; version="1.0-10"; sha256="0vig5c8hmsa6xapqzb8l4sm05qw7zc5s6b796bspffxj0crg3l3v"; depends=[ade4 KernSmooth lattice latticeExtra RColorBrewer sp]; }; + adegraphics = derive2 { name="adegraphics"; version="1.0-12"; sha256="0rq1v9fp6nh181y8v8nxch2f8507hz5z2kaxy95ybp4bhp0jj37r"; depends=[ade4 KernSmooth lattice latticeExtra RColorBrewer sp]; }; adehabitatHR = derive2 { name="adehabitatHR"; version="0.4.15"; sha256="1bwx2mfkzfknr6fjjkbx2xnm4gksd78i8fz0bcizqyi1zhg5hd0c"; depends=[ade4 adehabitatLT adehabitatMA deldir sp]; }; adehabitatHS = derive2 { name="adehabitatHS"; version="0.3.13"; sha256="158a6qzks0hml6hk4f1vr66gvwdn09792i2ca3k23061i3j3xp75"; depends=[ade4 adehabitatHR adehabitatMA sp]; }; adehabitatLT = derive2 { name="adehabitatLT"; version="0.3.23"; sha256="0hf6wpwhsvfp906xk5sadfnvz524zmm05d0h2zxpx6089c6hnw3j"; depends=[ade4 adehabitatMA CircStats sp]; }; adehabitatMA = derive2 { name="adehabitatMA"; version="0.3.12"; sha256="13mhj36nfs36988g53yrmhyd8yq2zzxl8ppzql63964n04fybbpb"; depends=[filehash sp]; }; adephylo = derive2 { name="adephylo"; version="1.1-11"; sha256="06pnrycc7562h17gxbli935289a48na3p4vpb2w96i5cbrjg4jqm"; depends=[ade4 adegenet ape phylobase]; }; adepro = derive2 { name="adepro"; version="2.0.0"; sha256="0q9h7wmkgdnbhg2ygw32jl0bm2vrl32ig2nci9pphgwpsfzb34jq"; depends=[audio Cairo MASS shape shiny shinyBS]; }; - adespatial = derive2 { name="adespatial"; version="0.2-0"; sha256="1yqpfkz7i8jkqkbpafm09s1g6mjigpca73b4959zw7gqp9aariz6"; depends=[ade4 adegraphics adephylo lattice MASS shiny sp spdep vegan]; }; + adespatial = derive2 { name="adespatial"; version="0.3-2"; sha256="1368r72d7yjv6w4nl621bjphzqngvnjj5v9ibzsvs801qg71dx7l"; depends=[ade4 adegraphics adephylo lattice MASS shiny sp spdep vegan]; }; adfExplorer = derive2 { name="adfExplorer"; version="0.1.4"; sha256="11z6jm20giqmmz4dwcpa9fshvrmlmv8m0y1vg053nch05884niz2"; depends=[]; }; adhoc = derive2 { name="adhoc"; version="1.1"; sha256="0a59fv9glcqh4zzd0887ndrhlcaylja6vay2ifajp8an29gjk1vv"; depends=[ape pegas polynom]; }; adimpro = derive2 { name="adimpro"; version="0.8.2"; sha256="0nfzk9pp4p16c1nvpidngag96r845376h8ljh7m6p6rhk9fs4jdw"; depends=[awsMethods]; }; - adiv = derive2 { name="adiv"; version="1.1"; sha256="12m8p1agahzck1nm8j765wacc6vrl0pa31wld4rqxl7c2pvhs7f4"; depends=[ade4 adegraphics adephylo ape cluster phylobase]; }; - adjclust = derive2 { name="adjclust"; version="0.5.6"; sha256="0hff2fjp6dyrsc6crcipq72x7bs3jblv42z7v2c63clrrs7byc0h"; depends=[Matrix matrixStats]; }; + adiv = derive2 { name="adiv"; version="1.2"; sha256="1lmq499ipv2a4f3270hdp54x8n7gij4ssgagxc9i35qwqwdbr8gy"; depends=[ade4 adegraphics adephylo ape cluster phylobase rgl]; }; + adjclust = derive2 { name="adjclust"; version="0.5.7"; sha256="059gzbnwkmy1l8yqbl8ksz80nm6pf917sxplp048jzx57sxpry2k"; depends=[capushe Matrix matrixStats]; }; adjustedcranlogs = derive2 { name="adjustedcranlogs"; version="0.1.0"; sha256="08apfvpqvnnalx230p4qf5ckrwm1sgzras4zfrysgym5d4map9ci"; depends=[cranlogs dplyr lubridate rvest xml2]; }; adklakedata = derive2 { name="adklakedata"; version="0.6.1"; sha256="1lzj3ib4bgfkq5lq12n47pwc52h7k35xbbwj6brwsgx1gd4fx3x6"; depends=[httr rappdirs]; }; - adlift = derive2 { name="adlift"; version="1.3-3"; sha256="0q4ipk9yax4wqp3jckpx6ihriqaaaz0knxd19cm20qzdx37vz4id"; depends=[EbayesThresh]; }; + adlift = derive2 { name="adlift"; version="1.4-1"; sha256="14q7fnhlqvxdhnfjhdhfmadz241srplbm069a7ybbsql21cphpf3"; depends=[EbayesThresh]; }; admixturegraph = derive2 { name="admixturegraph"; version="1.0.2"; sha256="0ld4qyyvbnr5lz9ff64wjwif4c9xnqyjmbfgbl9bk6pia98zppl3"; depends=[doParallel dplyr foreach ggplot2 MASS neldermead pracma]; }; adnuts = derive2 { name="adnuts"; version="1.0.0"; sha256="0jy9wq269r7s70bwld6ngxc6vmaj9vplq4wn97x4f3c6lqy42swc"; depends=[ellipse rstan]; }; + adpss = derive2 { name="adpss"; version="0.1.1"; sha256="0p2gyfc4rxmms8zdsq4hjsh1njfl2s736arq8aq1am2wh1w9k5ch"; depends=[Rcpp]; }; ads = derive2 { name="ads"; version="1.5-3"; sha256="1k1japzcf0mafxkv9dlzaqz9n4c749lsx0lja4wj327ninpdcfy4"; depends=[ade4 spatstat]; }; advclust = derive2 { name="advclust"; version="0.4"; sha256="1g8a8q4zh6d4152jb66fh7wj7k6ks5k4kfcazzw70jdn10yi6b38"; depends=[clue ggplot2 knitr MASS reshape2]; }; adwave = derive2 { name="adwave"; version="1.3"; sha256="11iy50ng0zxvwsvdsvx262j8zgqaai308lp5is47az7xzvk57mx7"; depends=[waveslim]; }; @@ -4207,35 +4377,37 @@ in with self; { aemo = derive2 { name="aemo"; version="0.2.0"; sha256="11msifszq7pzmcmwibf2dk2j5dqjc74hrxdxshlprkp6p8sfhijh"; depends=[assertthat dplyr lubridate stringr]; }; afCEC = derive2 { name="afCEC"; version="1.0.2"; sha256="0jdppp93z5nb8m5qbry6cvd472mwiq1yrmm11906c3z2bfz7791f"; depends=[Rcpp RcppArmadillo rgl]; }; afc = derive2 { name="afc"; version="1.4.0"; sha256="1iy1wa88kf6zi6x7lbd0jdir653cvzvdraliqpxbac413wwb5gwl"; depends=[]; }; - afex = derive2 { name="afex"; version="0.21-2"; sha256="0wf6fvfwk1v2bswp1j8ab2r157vr1i9r1wr1fqhrcaxa2c4fikmz"; depends=[car emmeans lme4 lmerTest pbkrtest reshape2]; }; + afex = derive2 { name="afex"; version="0.22-1"; sha256="065wbxljl77zqvc2c4gpfpfyc6mbnnrf24q399q9bxmrz3sapj8n"; depends=[car lme4 lmerTest pbkrtest reshape2]; }; affluenceIndex = derive2 { name="affluenceIndex"; version="1.0"; sha256="1nb2dlsnvjsvkyrfdaskmpr3kv3qgdfb60xgmzvscfli0yf4dzr1"; depends=[]; }; afmToolkit = derive2 { name="afmToolkit"; version="0.0.1"; sha256="1pm3xyh9vq10mmfgknlvlfr9f027xprrgy1dvbbxpi7f111hv1gl"; depends=[assertthat DBI dplyr ggplot2 gridExtra minpack_lm scales tibble]; }; afpt = derive2 { name="afpt"; version="1.0.0"; sha256="0kshyzvw8sp7p686xi98g758zld3n7kq44lnvly8d0y8fg6ahcl2"; depends=[]; }; - aftgee = derive2 { name="aftgee"; version="1.1-2"; sha256="0g4skg333vdj0cxwkcn7sh1km9rbwjjz40qz211rlzr7x76477rx"; depends=[BB geepack MASS survival]; }; - agRee = derive2 { name="agRee"; version="0.5-1"; sha256="1hmqvpcz4vnpcl9f92q5fy1ca89l9sq25fnsw2mxfsa0yqbyxpw6"; depends=[coda lme4 miscF R2jags]; }; + aftgee = derive2 { name="aftgee"; version="1.1.3"; sha256="1zkb99938q8pp318a0c0bpgzcqxc8ijygfz904lz6n40c5i2i9lz"; depends=[BB geepack MASS survival]; }; + agRee = derive2 { name="agRee"; version="0.5-2"; sha256="1fhpkhnq8gbdy8k2w5wwn7h7gj0mmvk052fqxfazksxrlqicbbhb"; depends=[coda lme4 miscF R2jags]; }; aggregation = derive2 { name="aggregation"; version="1.0.1"; sha256="0j9g604m2ccc7hcy02539yja9cf3xcbl25gvp838bp4x8w18my46"; depends=[]; }; agop = derive2 { name="agop"; version="0.1-4"; sha256="1jwyl02z053rsdw9hryv1nyj9wlq310l51fghp1p0j51c159mlpx"; depends=[igraph Matrix]; }; - agriTutorial = derive2 { name="agriTutorial"; version="0.1.3"; sha256="1ihz92f10p7nq0rw01hka5wg2svf2hgx9f39604ab0j99z0f99hz"; depends=[emmeans ggplot2 lattice lmerTest nlme pbkrtest]; }; + agriTutorial = derive2 { name="agriTutorial"; version="0.1.4"; sha256="1abi6cdgh9k6x9vapca3gcf3hn1z9dsmw24as9i5i2c57q06b6qx"; depends=[emmeans ggplot2 lattice lmerTest nlme pbkrtest]; }; agricolae = derive2 { name="agricolae"; version="1.2-8"; sha256="1c6n52jralp33hl3nmpv9fc9vsvs6lcz9j75f2zbz0r4sqd2mw89"; depends=[AlgDesign cluster klaR MASS nlme spdep]; }; - agridat = derive2 { name="agridat"; version="1.15"; sha256="08wlh75jv856linkspx5w9irjlbjkhqy9wwaciks79s00ii5vbzj"; depends=[]; }; + agridat = derive2 { name="agridat"; version="1.16"; sha256="1kgmjrj207md86qivadkmv3s2gh3hi9zv63bsj8b9vlcd9f58pfk"; depends=[]; }; agrmt = derive2 { name="agrmt"; version="1.40.4"; sha256="1y2gnq6b4zkxknygg73r8qrd435y7c69iqn8i56kwk1ccc1rwddx"; depends=[]; }; agsemisc = derive2 { name="agsemisc"; version="1.3-1"; sha256="1905q35jgjhghlawql43yh296kbpysp927x3hj750yshz5zayzyr"; depends=[lattice MASS]; }; ahaz = derive2 { name="ahaz"; version="1.14"; sha256="1z7w5rxd5cya7kxhgxqvn72k87y33ginxra9g7j9wrfs5jgx6kvx"; depends=[Matrix survival]; }; ahnr = derive2 { name="ahnr"; version="0.3.1"; sha256="1g8m3q108ricfyn4fjjaihpr93xz7fm2sfzg3i0fz1n1i703jwm8"; depends=[ggplot2 magrittr matrixcalc pdist pracma purrr visNetwork]; }; ahp = derive2 { name="ahp"; version="0.2.12"; sha256="0zjhgl0smzx4bkhmdm4rmpyrq4hmxy1nkxvwqjr40pz7vm69icqx"; depends=[data_tree DiagrammeR formattable yaml]; }; - aiRthermo = derive2 { name="aiRthermo"; version="1.2"; sha256="0j7nldmf63rap18dfa5rcwyy61fcn592fb3h1hp08b00qw39asx3"; depends=[]; }; + ahpsurvey = derive2 { name="ahpsurvey"; version="0.2.2"; sha256="0y1afsxakfx6zfv4vjl54zgp5yqfl2haga08qbz9shjwsm28jw0p"; depends=[dplyr knitr magrittr Rdpack tidyr]; }; + aiRthermo = derive2 { name="aiRthermo"; version="1.2.1"; sha256="058082qdfi1pbdgf26vbfahri1kbc8b2l816q4dq89j5aj5is0a2"; depends=[]; }; aidar = derive2 { name="aidar"; version="1.0.5"; sha256="1q2iz2qzh2yl0v0sc537xq4vbx2nblym3kv419vr7jvrghdpx3vj"; depends=[XML]; }; aimPlot = derive2 { name="aimPlot"; version="1.0.0"; sha256="1d52b7kccxba6j7n0gbd7pzs0p87zn32vv8gdf2f7lyr75qzgz7x"; depends=[ggplot2]; }; - airGR = derive2 { name="airGR"; version="1.0.10.11"; sha256="0m64ww5f4ilrkkpnkv9k1qxsxh519is6y8wciq472jjfwcnsscb1"; depends=[]; }; - airGRteaching = derive2 { name="airGRteaching"; version="0.2.2.2"; sha256="13alnmazf8n7sgfzh0hfq6i4cd2pl414vwrakgp36q365fkgzpnc"; depends=[airGR dygraphs htmlwidgets markdown plotrix shiny shinyjs xts]; }; + airGR = derive2 { name="airGR"; version="1.0.15.2"; sha256="1lnqmf2rcj7hynlxnhb52jizx2c8b5bw04apgldg0bnr1jscn7pi"; depends=[]; }; + airGRteaching = derive2 { name="airGRteaching"; version="0.2.3.2"; sha256="1i3pkpf6h958m0jw90q6767svy7waikwqxiq6spqg02lmfw88swp"; depends=[airGR dygraphs htmlwidgets markdown plotrix shiny shinyjs xts]; }; aire_zmvm = derive2 { name="aire.zmvm"; version="0.6.1"; sha256="1a6aq1fkjj053mi36ibykncd1hmcl0f5c0l2fi0cbx6hcysc28ic"; depends=[dplyr httr lubridate progress readr readxl rvest sp stringr tidyr xml2]; }; - airr = derive2 { name="airr"; version="1.1.0"; sha256="0fyyd6sw3fk7gwdxhxxrvsckyxj9qlqqsa20rhqdg3xslkwzzpjh"; depends=[readr stringi yaml]; }; + airportr = derive2 { name="airportr"; version="0.1.2"; sha256="06jk4dhr4qj6fpmlvslnbqj67qy78spcb7yhqa4qn2im4kpmb73q"; depends=[dplyr]; }; + airr = derive2 { name="airr"; version="1.2.0"; sha256="1vswbjmyhygmyqymkfxad9nwsbcgaggian1fyrx63w0y9c4dfv1h"; depends=[readr stringi yaml]; }; ajv = derive2 { name="ajv"; version="1.0.0"; sha256="1qd5ncb7rdnnvqfknsvq9nrpxrh0zv3jyh4b91dcvfvhp262vfrm"; depends=[RJSONIO V8 yaml]; }; akima = derive2 { name="akima"; version="0.6-2"; sha256="1klprj4a2pgy5pwdwnrn3siisi2lh8hr4z6vz38sdvjkcmakxnk1"; depends=[sp]; }; akmeans = derive2 { name="akmeans"; version="1.1"; sha256="1nqbxbx583n0h2zmpy002rlmr6j86j6bg76xj5c69brrh59dpyw1"; depends=[]; }; alabama = derive2 { name="alabama"; version="2015.3-1"; sha256="0mlgk929gdismikwx4k2ndqq57nnqj7mlgvd3479b214hksgq036"; depends=[numDeriv]; }; - alakazam = derive2 { name="alakazam"; version="0.2.10"; sha256="0bfqc7rbchmj0dby8c8xlxff9gk18kq1v8zqfj3s7h3yddrr7znr"; depends=[dplyr ggplot2 igraph lazyeval progress Rcpp readr scales seqinr stringi]; }; - albopictus = derive2 { name="albopictus"; version="0.3"; sha256="03vk2df17rkcg29il3jj5jlnjs4kkfnj1cfrxdgj3hgm7rbs38si"; depends=[]; }; + alakazam = derive2 { name="alakazam"; version="0.2.11"; sha256="0p6rg09cxphp6mcbllwrvps4l9y2qssxhgxy6ryr4958gc1may16"; depends=[dplyr ggplot2 igraph lazyeval progress Rcpp readr scales seqinr stringi tidyr]; }; + albopictus = derive2 { name="albopictus"; version="0.4"; sha256="13njv26lbymfkir5wkbnr0nkbi65n15d96bqin27lzd5rj576bqr"; depends=[]; }; ald = derive2 { name="ald"; version="1.2"; sha256="1xmvxmyc1nmsrlyr0rvzz20jx6g1f2jvxpg9f39v48ngg5gmanjj"; depends=[]; }; alfred = derive2 { name="alfred"; version="0.1.6"; sha256="07x012lj33m0pmxdwk39ywrlvlfkp7mb203dwv8v88cxplhbaiq3"; depends=[dplyr jsonlite lubridate magrittr tibble tidyr]; }; algorithmia = derive2 { name="algorithmia"; version="0.0.2"; sha256="0kly70l9si8ni8n5xm30vai70pvfvip6354scvjqj34362s0lm0a"; depends=[base64enc httr rjson xml2]; }; @@ -4248,6 +4420,7 @@ in with self; { allelematch = derive2 { name="allelematch"; version="2.5"; sha256="1kws6y3igq6l85cfjrck2dzcfpgr56ridbc6w071h8kjw19mlzas"; depends=[dynamicTreeCut]; }; allelic = derive2 { name="allelic"; version="0.1"; sha256="0xs4kd3vqb5ph8kqc3lcqgirrdkz8b627pvnczvci2g0sr3cl18j"; depends=[]; }; alluvial = derive2 { name="alluvial"; version="0.1-2"; sha256="039frwrsxq1lb97s7vf2vbyyadimkigs628ymym06fxka53drdkp"; depends=[]; }; + alpaca = derive2 { name="alpaca"; version="0.2"; sha256="0hjy7irxa31kv92xvnj58zasmy4drbmaq6g1js4d5ns6d6fqx845"; depends=[data_table Formula MASS Rcpp RcppArmadillo]; }; alphaOutlier = derive2 { name="alphaOutlier"; version="1.2.0"; sha256="09yrbv7jsiymw5gzp8p92ki70v1fys2k75x4sb9s7wy3c58wn1cd"; depends=[nleqslv quantreg Rsolnp]; }; alphabetr = derive2 { name="alphabetr"; version="0.2.2"; sha256="1pmp6zwhgycb38y5jbvrbv2nza7gyjh508vy09ml483c2cysvc1r"; depends=[clue dplyr multicool Rcpp]; }; alphahull = derive2 { name="alphahull"; version="2.1"; sha256="129b2j9j60p2wvbb8703x18pydv1g715vmjcb1a80v70i93w4f49"; depends=[ggplot2 R_utils sgeostat spatstat splancs tripack]; }; @@ -4260,18 +4433,20 @@ in with self; { altmeta = derive2 { name="altmeta"; version="2.2"; sha256="1k3p06v8ccj0dbjfpl4nw6579bwcy4j925rk15v55khqmrlx780l"; depends=[]; }; amap = derive2 { name="amap"; version="0.8-16"; sha256="1qnl2x98x64iaipkx5126rsddq2sx5ml43h75xyiyn30yvbmlxyk"; depends=[]; }; ambhasGW = derive2 { name="ambhasGW"; version="0.0.2"; sha256="0v517i4whip45pk6bwlwval9pz367pcgzz62b2z22mrwgi6m6bck"; depends=[raster rgdal yaml]; }; + ambient = derive2 { name="ambient"; version="0.1.0"; sha256="142q30rhi0wz0gp1v0swm83gbli8j6plpzzpqjwnjc693wd3a1ih"; depends=[Rcpp]; }; ameco = derive2 { name="ameco"; version="0.2.9"; sha256="0vzwsy7gp17ghl1hgcsbfs9rarzl8dl36x6lplnzrisqv3dqmk25"; depends=[]; }; amelie = derive2 { name="amelie"; version="0.2.0"; sha256="01v93dswr9nk0kvq50jri4568w17pwkcn64xbpzn2p4c7w6gqkhh"; depends=[]; }; amen = derive2 { name="amen"; version="1.3"; sha256="1qaznfmnh3dlnp41afd37lr328qzy50hn8hi0c302wj0f992ycqg"; depends=[]; }; aml = derive2 { name="aml"; version="0.1-1"; sha256="09xxlxp784wlb561apns3j8f2h9pfk497cy5pk8wr4hhqqv4d3al"; depends=[lars]; }; + ammistability = derive2 { name="ammistability"; version="0.1.0"; sha256="00wcc84i9p8fmjjhhpi8435min5m749gsmvnh98zci9qk8glx4pl"; depends=[agricolae ggcorrplot ggplot2 Rdpack reshape2]; }; ampd = derive2 { name="ampd"; version="0.2"; sha256="0bi8qngd37n60ym516yjcahxc536vdwm60rq5ld32170hww69j7c"; depends=[]; }; - amt = derive2 { name="amt"; version="0.0.4.0"; sha256="1qdkvkxkxk7l2bjr11h0k9vhh5vapvm12f20lmj7rhamipc43ybv"; depends=[broom circular dplyr fitdistrplus FNN geosphere KernSmooth lazyeval leaflet lubridate magrittr maptools purrr raster Rcpp rgeos rlang sp survival tibble tidyr]; }; - anMC = derive2 { name="anMC"; version="0.2.0"; sha256="1j6dah49sgfsb7bj4xys5rcaqw12rrkqhqryqz2xhdkazjmz3gpq"; depends=[mvtnorm Rcpp RcppArmadillo]; }; + amt = derive2 { name="amt"; version="0.0.5.0"; sha256="0p7k9g9wkd6kmf5pid8kgni1ilb6vrn7gb38l8g47zpwx5wg4zhf"; depends=[broom circular dplyr fitdistrplus FNN geosphere KernSmooth lazyeval leaflet lubridate magrittr maptools purrr raster Rcpp rgeos rlang sf sp survival tibble tidyr velox]; }; + anMC = derive2 { name="anMC"; version="0.2.1"; sha256="02mzmaxjjbjqarfwdv6465p5hvnnpsqfkb1wkm68bx64cimgldki"; depends=[mvtnorm Rcpp RcppArmadillo]; }; anacor = derive2 { name="anacor"; version="1.1-3"; sha256="0mj8g9p4fla0ax9jvcq7kii4lrhj8g872p11nys06anva22qjp51"; depends=[car colorspace fda]; }; analogsea = derive2 { name="analogsea"; version="0.6.0"; sha256="1fcvf3yci3szm155pnk89q36dgc55wdlffvll642zn26zc5d1y5n"; depends=[aws_s3 httr jsonlite magrittr yaml]; }; - analogue = derive2 { name="analogue"; version="0.17-0"; sha256="00wk4jnzif28ibx9s3m68qdx64ycdgg5yr6ybb0srlydikvf1sy8"; depends=[brglm lattice MASS mgcv princurve vegan]; }; + analogue = derive2 { name="analogue"; version="0.17-1"; sha256="09xv6dxdlc5kwsbh9vzp2mnxgbccimiadjpj12iiw6hcplw6v4ma"; depends=[brglm lattice MASS mgcv princurve vegan]; }; analogueExtra = derive2 { name="analogueExtra"; version="0.1-1"; sha256="1s3qs10hf6hkna0bicid1mc8x8r449bl93xpgyw6lnsjgh2yx62c"; depends=[analogue rgl vegan3d]; }; - analytics = derive2 { name="analytics"; version="2.0"; sha256="1jkdjqc3fnvvsgi6x9ncf36rxzq0a55cmgkcv92mfmpcramg2lk6"; depends=[car cluster fractal lmtest MASS np powerplus robust trend TSA urca]; }; + analytics = derive2 { name="analytics"; version="3.0"; sha256="0js3c8lwj3knccb55nq03cbjlf4w390p9aid2mi5x80l3ayd9in1"; depends=[car cluster fractal lmtest MASS np powerplus robust trend TSA urca VIM]; }; analyz = derive2 { name="analyz"; version="1.4"; sha256="0qdh1gld2dkl0krbhm2vcqg8dfs03dn51rclgsw02554s06dlgxw"; depends=[]; }; anchoredDistr = derive2 { name="anchoredDistr"; version="1.0.3"; sha256="07q4np0zryb49cpi7w5iz0qna63cyp9nz13d8ws6x9ccg417r99a"; depends=[DBI dplyr ggplot2 np plyr reshape2 Rmisc RSQLite]; }; anchors = derive2 { name="anchors"; version="3.0-8"; sha256="12gd2526y7s2a8i6b9xma2c3sc6zxnwzl6sn8b50hbxizwr8d34j"; depends=[MASS rgenoud]; }; @@ -4284,44 +4459,45 @@ in with self; { animalTrack = derive2 { name="animalTrack"; version="1.0.0"; sha256="0jlvfflpaq64s48sblzh1n1vx8g3870iss97whigri29s6hn79ry"; depends=[rgl]; }; animation = derive2 { name="animation"; version="2.5"; sha256="0pxmihfr3q1hh4cdnzf7wbzqak5spa3kv4p1wl89giqqngqzwcmj"; depends=[]; }; anipaths = derive2 { name="anipaths"; version="0.9.6"; sha256="0wqpnn85gqsy0m40allx0mngnq5lqz5qhl9g8v0kh0073xq4mvvc"; depends=[animation knitr mgcv RColorBrewer rgdal scales sp]; }; - annovarR = derive2 { name="annovarR"; version="1.0.0"; sha256="0l2csp06m5f3i1b4h0pvl8mmzx25c0b411c5sdc3qszirbplh038"; depends=[AnnotationDbi BioInstaller configr data_table DBI futile_logger glue ngstk RMySQL RSQLite stringi stringr vcfR]; }; anocva = derive2 { name="anocva"; version="0.1.1"; sha256="1byg40jla71k1901js5h9yq89j63d00vkm60id1fxlpv95c4wdrr"; depends=[cluster]; }; anoint = derive2 { name="anoint"; version="1.4"; sha256="10gdqgag9pddvxh80h458gagvv1474g4pcpa71cg3h7g62rqvmv5"; depends=[glmnet MASS survival]; }; anomalize = derive2 { name="anomalize"; version="0.1.1"; sha256="1szxjc8bh616z2xc50hcggh4ky1b7343i3xmg81rbssvkl2gghlh"; depends=[dplyr ggplot2 glue purrr rlang sweep tibble tibbletime tidyr timetk]; }; - anomaly = derive2 { name="anomaly"; version="1.0.0"; sha256="1l86y3hzqi06s1v3l5vkvk679cy630i2pj0yzxyznm5fjq43l47r"; depends=[dplyr Rdpack rlang]; }; + anomaly = derive2 { name="anomaly"; version="1.1.0"; sha256="0v1pgyckqkimyh1hh68clyqnm9hkzmz3dal676l9qaiwbgqmkxi4"; depends=[dplyr ggplot2 Rdpack rlang]; }; anomalyDetection = derive2 { name="anomalyDetection"; version="0.2.5"; sha256="132wb0xz04zib3x7802b2q546rkf097rsxyi9mi86g6vv7yyw9z1"; depends=[caret dplyr ggplot2 gmp magrittr MASS plyr purrr Rcpp RcppArmadillo tibble tidyr]; }; anominate = derive2 { name="anominate"; version="0.6"; sha256="01p2qkqf88bzhwywyass5r8dwg2ycflmkbzmsps7fzy0kv3xyb02"; depends=[coda MCMCpack pscl wnominate]; }; anonymizer = derive2 { name="anonymizer"; version="0.2.0"; sha256="0zlzxcqy8fjhh6ab58a1pi0k686dzgap58d160ms6bsr5mgn3fbf"; depends=[]; }; - antaresProcessing = derive2 { name="antaresProcessing"; version="0.15.3"; sha256="0asr43lf8vajf72sgpixy5w7r7v7b83a0877q6dadcxxr4mifr8f"; depends=[antaresRead data_table]; }; - antaresRead = derive2 { name="antaresRead"; version="2.1.2"; sha256="1vw2q2affpi4icqbsh89qkhdf6xxfjnwn6939ibgw5vv8df1b11s"; depends=[data_table lubridate plyr shiny stringr]; }; - antaresViz = derive2 { name="antaresViz"; version="0.14.0"; sha256="0xli4bvk5nds357wq3r1dp155xrcxcjscndbysfdv52827i80nxs"; depends=[antaresProcessing antaresRead assertthat data_table dygraphs geojsonio htmltools htmlwidgets leaflet leaflet_minicharts lubridate manipulateWidget plotly rAmCharts raster rgeos shiny sp spMaps webshot]; }; + antaresProcessing = derive2 { name="antaresProcessing"; version="0.16.0"; sha256="1wbrp07j8518p53yismij5mylxz34r3n8k4f7k8aj43armavkmxk"; depends=[antaresRead data_table]; }; + antaresRead = derive2 { name="antaresRead"; version="2.2.1"; sha256="0j94waw0pq9fni4kpmcry354fwpqg64k9si5p3zgcrxhx3ah2dp5"; depends=[bit64 data_table lubridate plyr shiny stringr]; }; + antaresViz = derive2 { name="antaresViz"; version="0.15.0"; sha256="16gf5spgx56rgf2d25zv5dihhbbgvfxryswfqa4gjlpjc2827zar"; depends=[antaresProcessing antaresRead assertthat data_table dygraphs geojsonio htmltools htmlwidgets leaflet leaflet_minicharts lubridate manipulateWidget plotly rAmCharts raster rgeos shiny sp spMaps webshot]; }; antitrust = derive2 { name="antitrust"; version="0.99.10"; sha256="1xgkbsnsn39s37my7sj917kvq67gxwai7k7lym2i18m60cnz0ilb"; depends=[BB evd MASS numDeriv]; }; - antiword = derive2 { name="antiword"; version="1.1"; sha256="0nbx2l0d2y4qvcw4dw3m26zfkgdmav4cq0l00gib7l3y9pqxzjh5"; depends=[sys]; }; + antiword = derive2 { name="antiword"; version="1.2"; sha256="0715ykn1ik6x8qgmdw39adkxark4i5p9wpk7cirk8hz1g2qx6kij"; depends=[sys]; }; + anyLib = derive2 { name="anyLib"; version="1.0.4"; sha256="11x9af3j008kxxsy151894ph0lwrkzxq78z6bvwzwqzdqlsvnv3f"; depends=[BiocInstaller curl devtools httr withr]; }; + anyflights = derive2 { name="anyflights"; version="0.1.0"; sha256="14mmzyhm8nz2xjs7bfyihgvy0an01lpv6hn9dxcqvbcsc7vfmigs"; depends=[dplyr httr lubridate RCurl readr tibble]; }; anytime = derive2 { name="anytime"; version="0.3.1"; sha256="1ibpmdq8i9ch06484ql0sdwfrs6smz40qnnw523pb0ryly6q9h16"; depends=[BH RApiDatetime Rcpp]; }; aod = derive2 { name="aod"; version="1.3"; sha256="1a6xs5d5289w69xd2salsxwikjjhjzvsnplqrq78b1sr6kzfyxz3"; depends=[]; }; - aods3 = derive2 { name="aods3"; version="0.4-1"; sha256="074c16wmgd1vc2yvwx1y84bg55hvmm5yi8zgpwh51jcsbqlhbpgn"; depends=[boot lme4]; }; + aods3 = derive2 { name="aods3"; version="0.4-1.1"; sha256="1kdmgzd5nkzm0awdjls6fc8p9hxsph9ha9k1jxbppdi4i6f0i7rv"; depends=[boot lme4]; }; aoos = derive2 { name="aoos"; version="0.5.0"; sha256="0y92vs27i0mkpjdclqzq4j9g1axkymhi3v8xp1v6hazh35yzjkfj"; depends=[magrittr roxygen2]; }; aop = derive2 { name="aop"; version="1.0.0"; sha256="1i3mixiwcvqygbcvj6f9vm223plmydzmixpy6nhis2zv9d90vakd"; depends=[ggplot2 graph igraph plyr Rgraphviz rjson]; }; aoristic = derive2 { name="aoristic"; version="0.6"; sha256="0b9h2l59vvrvbjjwwb43j74frvwa8lsj4x5kwhwpsfjfch1yqwjl"; depends=[classInt ggplot2 GISTools lubridate maptools MASS plotKML RColorBrewer reshape2 rgdal sp spatstat]; }; apTreeshape = derive2 { name="apTreeshape"; version="1.5-0"; sha256="0mnydk157557pnkjvcadlghn5d8w9kxas4kwz4y4w21xg7z1jrig"; depends=[ape coda cubature pbapply quantreg]; }; - apa = derive2 { name="apa"; version="0.2.0"; sha256="1f9c8m5z8j7mbmbh61vcs680ya1zq5spwqs90zhajaw5fhvlg8km"; depends=[dplyr magrittr purrr rmarkdown stringr]; }; - apaTables = derive2 { name="apaTables"; version="2.0.4"; sha256="1msb8aygzbcggdcifmcjpgcpnscvr6fq2ib5afff1vzbas9hjrs3"; depends=[boot broom car dplyr tibble]; }; + apa = derive2 { name="apa"; version="0.3.0"; sha256="0bpg2nf6838mb2apj2wqi1gbn3zbm7lsixykgkzr539rcdjfdggd"; depends=[dplyr magrittr purrr rmarkdown stringr]; }; + apaTables = derive2 { name="apaTables"; version="2.0.5"; sha256="0h986jqdl65fd33gfa433ik77r6lm9zrq75qfk5r8xsdgzb4wgva"; depends=[boot broom car dplyr tibble]; }; apaText = derive2 { name="apaText"; version="0.1.1"; sha256="1r217k60w027i63nbj24b1rm37m4qf7a6iirc941s945babkxcmb"; depends=[dplyr]; }; apc = derive2 { name="apc"; version="1.3"; sha256="1hgkqkvry9is8kjk2w46k637sig7fdznnc75wbrc8bq1hbrmf785"; depends=[lattice]; }; apcluster = derive2 { name="apcluster"; version="1.4.7"; sha256="188hdfmwjjx3aic599nwmkzjqm9j9jighi5bly6qd43c1vj6ih2s"; depends=[Matrix Rcpp]; }; apdesign = derive2 { name="apdesign"; version="1.0.0"; sha256="041zyd7ih9nnj92jj9vb9ya1ij9lmj1dzx64q74vyiadw1ix5l66"; depends=[Matrix]; }; - ape = derive2 { name="ape"; version="5.1"; sha256="0vm2065993wf4hdqarxqykhfz9aaj0rrb98alhkq4qw1d2kdrmdp"; depends=[lattice nlme Rcpp]; }; + ape = derive2 { name="ape"; version="5.2"; sha256="05b4yka5cirdgxd4d7iiaqvr428pk3j6n9q6dvg5j38kdj2h5sr7"; depends=[lattice nlme Rcpp]; }; apercu = derive2 { name="apercu"; version="0.2.3"; sha256="0w9hi8pdjb3nschh4cy387q67jxhkl2bn9vir949rsl831x4cs1j"; depends=[pls]; }; apex = derive2 { name="apex"; version="1.0.3"; sha256="157i67yvb9xqlhzcgkxj7n5lq65svxs82z38dv2c0k8p4krjl1pd"; depends=[adegenet ape phangorn]; }; - aphid = derive2 { name="aphid"; version="1.1.0"; sha256="0mf2v7b915hpasic2yqxi0g5fcrwac4d1ycikwzcd9hb9qngcb0n"; depends=[kmer openssl Rcpp]; }; + aphid = derive2 { name="aphid"; version="1.3.0"; sha256="13h5vwxrw74drw8ai8y0i3c20kdhbybaa3zyplrnlsa2yzzdhqa2"; depends=[kmer openssl Rcpp]; }; aplore3 = derive2 { name="aplore3"; version="0.9"; sha256="0af6klscsxvh4amp519b6r41bzysf61p040fj4l5706bbya1arhw"; depends=[]; }; aplpack = derive2 { name="aplpack"; version="1.3.2"; sha256="14vwzzshsgkw6gxwnnf6h9fixnwp3g8pd3rv6qjr0y8gis1lmjbg"; depends=[]; }; - apmsWAPP = derive2 { name="apmsWAPP"; version="1.0"; sha256="1azgif06dsbadwlvv9nqs8vwixp6balrrbpj62khzmv1jvqr4072"; depends=[Biobase DESeq edgeR genefilter gtools multtest seqinr]; }; + apmsWAPP = derive2 { name="apmsWAPP"; version="1.0"; sha256="1azgif06dsbadwlvv9nqs8vwixp6balrrbpj62khzmv1jvqr4072"; depends=[aroma_light Biobase DESeq edgeR genefilter gtools multtest seqinr]; }; apng = derive2 { name="apng"; version="1.0"; sha256="13hvr1w566anrhdicaqwqjgfq2lk3zkn5gcfgy8zazjnad4vy07y"; depends=[bitops]; }; appell = derive2 { name="appell"; version="0.0-4"; sha256="0g7pzhxqgscnyf07xycbrpyimp1z1hljgcr3nqigpx09w7zi5wlw"; depends=[]; }; apple = derive2 { name="apple"; version="0.3"; sha256="194z2f6hwdjjxdkjwlmfhpfp26p9yp3gparklhdbb6zlb4a9nnhz"; depends=[MASS]; }; appnn = derive2 { name="appnn"; version="1.0-0"; sha256="0wkpr6lcd68wlzk6n622ab7sd99l837073czn4k56hw8bw9v68j3"; depends=[]; }; - approximator = derive2 { name="approximator"; version="1.2-6"; sha256="165qvx5946wkv1qsgbmjhmwvik7m23r1vbpnp7claylflgj1ycnm"; depends=[emulator]; }; + approximator = derive2 { name="approximator"; version="1.2-7"; sha256="0smqjdla9mvzy164nsb0pw0sgal3w2wnyhqidp74h0smyczrr1zw"; depends=[emulator mvtnorm]; }; approxmatch = derive2 { name="approxmatch"; version="1.0"; sha256="1z1lrbfvm380p2az88hrxr3f2cgbv2h70wzm99vi9a2dmh0pl7qy"; depends=[]; }; aprean3 = derive2 { name="aprean3"; version="1.0.1"; sha256="17rnq02sncl6rzwyln10200s43b8z1s2j0kdi9kgcb6qr51v12rv"; depends=[]; }; apricom = derive2 { name="apricom"; version="1.0.0"; sha256="1gyd1yln14cn0iswj7sjs4hav6j6d4f3ncps4gqbci5fwha5blcr"; depends=[logistf penalized rms shrink]; }; @@ -4331,7 +4507,7 @@ in with self; { apt = derive2 { name="apt"; version="2.5"; sha256="1y18bqnnxy5p0xx9gbfrnrzq3nlhw3psl5zlibrw6lfhb8lxd4mk"; depends=[car copula erer gWidgets urca]; }; aptg = derive2 { name="aptg"; version="0.1.0"; sha256="06z8041h1k9v0ymd7azn11xzhqxb8lda4r7nyg51h8z3i8mpq1ba"; depends=[ape brranching phytools taxize xml2]; }; aqfig = derive2 { name="aqfig"; version="0.8"; sha256="0ha0jb5ag3zx6v7c63lsm81snslzb8y8g565mxjmf7vxpcmzzqsi"; depends=[geoR]; }; - aqp = derive2 { name="aqp"; version="1.16"; sha256="11ksjvvwazan2xk535ygrk8qs66ny6fywfgw2mpy8kv2637l9pay"; depends=[cluster digest Hmisc lattice MASS plotrix plyr RColorBrewer reshape scales sp stringr]; }; + aqp = derive2 { name="aqp"; version="1.16-3"; sha256="16b7yshsi5cwd8spvjmlnnnyvcvkxjcsjkwxizpxjwzy3fdkc4g6"; depends=[cluster digest Hmisc lattice MASS plotrix plyr RColorBrewer reshape scales sp stringr]; }; aqr = derive2 { name="aqr"; version="0.4"; sha256="04frgil3nbxsww66r9x0c6f308pzqr1970prp20bdv9qm3ym5axw"; depends=[RCurl xts]; }; arabicStemR = derive2 { name="arabicStemR"; version="1.2"; sha256="1vflynbi7aln7x2p4jg9gsvfrxn4v6qkb4wbrzxmj561lqy9fcay"; depends=[]; }; arc = derive2 { name="arc"; version="1.2"; sha256="1advs0aqxh84c5n9akww8cdafh7npgaibrb42wncwhv9nfi7wy1v"; depends=[arules discretization Matrix R_utils]; }; @@ -4339,16 +4515,18 @@ in with self; { archetypes = derive2 { name="archetypes"; version="2.2-0"; sha256="1djzlnl1pjb0ndgpfj905kf9kpgf9yizrcvh4i1p6f043qiy0axf"; depends=[modeltools nnls]; }; archiDART = derive2 { name="archiDART"; version="3.2"; sha256="08jam0nbqvrgrxjqj24k7f0dybyi935w977yi1qk34q1p48462ph"; depends=[rgl sp XML]; }; archivist = derive2 { name="archivist"; version="2.3.1"; sha256="04f1f9fczibda2a4wivmgwzh5p9xblm9hk8wkgd6xqrvxgv5z8mn"; depends=[DBI digest flock httr lubridate magrittr RCurl RSQLite]; }; - archivist_github = derive2 { name="archivist.github"; version="0.2.2"; sha256="04xb2i47y12ic87gb2l30bldil0505h7s9601hq0afjg3npx6jq7"; depends=[archivist digest git2r httr jsonlite]; }; + archivist_github = derive2 { name="archivist.github"; version="0.2.6"; sha256="092fzi505vx9xbk41m86d0isxna42iflp7q2kjiqa6z1ccvim2yx"; depends=[archivist digest git2r httr jsonlite]; }; areaplot = derive2 { name="areaplot"; version="1.2-0"; sha256="0xzfgbnzqsvnq46nsxwyqrwldbaqns3h5np0f5wxpjda9cy2rna1"; depends=[]; }; + arena2r = derive2 { name="arena2r"; version="1.0.0"; sha256="14zjpglp389pldi436935fz6mgi4jdgfii1m035nsvihrms9gqkh"; depends=[dplyr ggplot2 magrittr purrr rlang shiny shinyBS shinydashboard shinyjs tidyr]; }; arf3DS4 = derive2 { name="arf3DS4"; version="2.5-10"; sha256="12cbrk57c9m7fj1x7nfmcj1vp28wj0wymsjdz8ylxhm3jblbgmxc"; depends=[corpcor]; }; - arfima = derive2 { name="arfima"; version="1.6-7"; sha256="0wajd15lbzbc62v8kclnp0fbppnm7vy2zxrsd5njx5sswvkfx5v3"; depends=[ltsa]; }; + arfima = derive2 { name="arfima"; version="1.6-8"; sha256="0ym86wzwdlxrx987ibaspqmjq6i3j5cx3w04dlia5js1siyq9clp"; depends=[ltsa]; }; argon2 = derive2 { name="argon2"; version="0.2-0"; sha256="0kqn06rpb39jlzizjlnc5c44mfic8llrshxn7ljgmyj35lbqwxqh"; depends=[]; }; argosfilter = derive2 { name="argosfilter"; version="0.63"; sha256="0rrc2f28hla0azw90a5gk3zj72vxhm1b6yy8ani7r78yyfhgm9ig"; depends=[]; }; argparse = derive2 { name="argparse"; version="1.1.1"; sha256="0fzrbj87b274vf96azdnsjxk2nf45d5wy58vzmlah4b4h7q4j524"; depends=[findpython getopt jsonlite proto]; }; argparser = derive2 { name="argparser"; version="0.4"; sha256="0s1wxshx4jk69wfxhycx973q6y8cmqrfymyjklhq1i8xrj0kmmx9"; depends=[]; }; ari = derive2 { name="ari"; version="0.1.0"; sha256="05pva8jp7dhl46dm1fha6f8mavrs76a6c491fq3mavly8qcbgx44"; depends=[aws_polly progress purrr rmarkdown rvest tuneR webshot xml2]; }; aricode = derive2 { name="aricode"; version="0.1.1"; sha256="0c9k6bp0zdm4l28ga19x8v30x3zw0fbcf7wicnn15xc516glfb2j"; depends=[Matrix Rcpp]; }; + arkdb = derive2 { name="arkdb"; version="0.0.4"; sha256="0flcpka5s26gnf7kh1c76ak832h4iyh0012a1w0d805j5dhf67z6"; depends=[DBI progress]; }; arm = derive2 { name="arm"; version="1.10-1"; sha256="0vvp90jygajd6ydky57z66wqjq9msfbl88irj5jbsray574mh4bg"; depends=[abind coda lme4 MASS Matrix nlme]; }; arnie = derive2 { name="arnie"; version="0.1.2"; sha256="14xkgyfn9zvkbgram15w7qzqc5pl1a8ig66cif7a79najrgd914r"; depends=[]; }; aroma_affymetrix = derive2 { name="aroma.affymetrix"; version="3.1.1"; sha256="1x2lwdabvh7cjdy57jrnbdb7s9vxs18zyvfzwavi2pgldqz6v2aw"; depends=[aroma_apd aroma_core future listenv MASS matrixStats R_cache R_devices R_filesets R_methodsS3 R_oo R_utils]; }; @@ -4356,19 +4534,19 @@ in with self; { aroma_cn = derive2 { name="aroma.cn"; version="1.6.1"; sha256="1d9g81b12a3m03wrvb3cvg33fjybgiabpxhci2y2rr6diay42pmr"; depends=[aroma_core matrixStats PSCBS R_cache R_filesets R_methodsS3 R_oo R_utils]; }; aroma_core = derive2 { name="aroma.core"; version="3.1.3"; sha256="0zikic3hqfn00kgb0078paikz4bdcqq0qygvl4xbvq48868wcz1q"; depends=[future listenv matrixStats PSCBS R_cache R_devices R_filesets R_methodsS3 R_oo R_rsp R_utils RColorBrewer]; }; arrApply = derive2 { name="arrApply"; version="2.0.1"; sha256="007fsqgb9bsr4mscljhp37dvrk7cv6nrb7y28w8kc7mxvgdq29wg"; depends=[Rcpp RcppArmadillo]; }; - arrangements = derive2 { name="arrangements"; version="1.0.2"; sha256="0vqxx0pzvvqnbklpxrcq7d5ppicwbwk3gb2846in0gqjhn4ya4g1"; depends=[gmp R6]; }; + arrangements = derive2 { name="arrangements"; version="1.1.4"; sha256="04l63br7a93qgiaglzmxpjw03y5p05jihlbbshy9cb7lg3rdld6m"; depends=[gmp R6]; }; arrayhelpers = derive2 { name="arrayhelpers"; version="1.0-20160527"; sha256="1ib91hpg6xgy0jr4sb8ib19x0v4f5n96lak0qm0z5vksawgcnp1l"; depends=[svUnit]; }; - ars = derive2 { name="ars"; version="0.5"; sha256="0m63ljb6b97kmsnmh2z5phmh24d60iddgz46i6ic4rirshq7cpaz"; depends=[]; }; - arsenal = derive2 { name="arsenal"; version="1.2.0"; sha256="1glh8vyms5hcplzzn5n6fynr8jyryy65xb2y9lf6nv7kziwqr5fk"; depends=[testthat]; }; + ars = derive2 { name="ars"; version="0.6"; sha256="0zs1rk3i7pc9wcvxrvjcls194mfbvmkz7cb6pwd1cm3fzjwsyxsp"; depends=[]; }; + arsenal = derive2 { name="arsenal"; version="1.4.0"; sha256="1hd1nx5nzpswi5903vkkhf4ap4pk5gjxj45xc8z0wngp4xrjv4a4"; depends=[testthat]; }; artfima = derive2 { name="artfima"; version="1.5"; sha256="1nqsq9fsqk9kag9n7i2r9yvf578nkdfrkkv7qy8650prka0jca2p"; depends=[gsl ltsa]; }; arules = derive2 { name="arules"; version="1.6-1"; sha256="0glfqgxr87900kigmkby2ff7qrjvd6aq595q85y056i5ckjcp615"; depends=[Matrix]; }; arulesCBA = derive2 { name="arulesCBA"; version="1.1.3-1"; sha256="0k41m966m2x8xjzvpy6xn4whn9l2dpvidyh39kmhyvya87ibhyg8"; depends=[arules discretization Matrix testthat]; }; arulesNBMiner = derive2 { name="arulesNBMiner"; version="0.1-5"; sha256="1q4sx6c9637kc927d0ylmrh29cmn4mv5jxxpl09yaclzfihjlk9a"; depends=[arules rJava]; }; - arulesSequences = derive2 { name="arulesSequences"; version="0.2-19"; sha256="1cncvrf7za38b3vdwbzy4yrbakj7jbpxrl1jg6bvjnlkymiajavx"; depends=[arules]; }; + arulesSequences = derive2 { name="arulesSequences"; version="0.2-20"; sha256="0qgsf1wbdw4yqcnbczi2kcvb6vg9f4gy403qds1qh4129yrjyvy9"; depends=[arules]; }; arulesViz = derive2 { name="arulesViz"; version="1.3-1"; sha256="0lz6dl7ywzbyviib97s48namr6cjjn98anblfpigzaq16zkf2pxl"; depends=[arules colorspace DT igraph plotly scatterplot3d seriation vcd visNetwork]; }; asVPC = derive2 { name="asVPC"; version="1.0.2"; sha256="07nfwr0lsfpwgfdgzcdn1svw8dnjfni5ga9q77yjd1bj0wf76ci2"; depends=[ggplot2 plyr]; }; asaur = derive2 { name="asaur"; version="0.50"; sha256="0c1rgic76w3i2xhna7i52lyc0p01s5b1mxyn55gqw6i19v9mq0b3"; depends=[]; }; - asbio = derive2 { name="asbio"; version="1.5"; sha256="0p54a9x54jg81hd86br6b3dg3sr9kzl9rmnrh7x3m6bkinzc780c"; depends=[deSolve lattice multcompView mvtnorm pixmap plotrix scatterplot3d]; }; + asbio = derive2 { name="asbio"; version="1.5-3"; sha256="0k4cyivh08p9psp0z07nqa04i7xcqf4gh7x0vfk17rvycywksbhy"; depends=[deSolve lattice multcompView mvtnorm pixmap plotrix scatterplot3d]; }; ascii = derive2 { name="ascii"; version="2.1"; sha256="19dfbp7k4bjxjn8wdzhbmz7g3za6gn8vcnd5qkm4dz7gg1fg7b8p"; depends=[]; }; asciiSetupReader = derive2 { name="asciiSetupReader"; version="1.4.0"; sha256="0pq23ncwlndhzw4qfvzcv9nh74fq6hh9k6w96xhxx69ajy9zd2ys"; depends=[data_table haven readr stringr zoo]; }; asciiruler = derive2 { name="asciiruler"; version="0.2"; sha256="0xhkbsy9dypk09avazgxczyfkh3rhdxhwci688dw1lxnhxv1hj24"; depends=[stringr]; }; @@ -4376,9 +4554,9 @@ in with self; { asdreader = derive2 { name="asdreader"; version="0.1-3"; sha256="15a922aw0v5w4hrha03xifx8cpifcc773gambgwqq6i5nz08ya26"; depends=[]; }; ash = derive2 { name="ash"; version="1.0-15"; sha256="1ay2a2agdmiz7zzvn26mli0x0iwk09g5pp4yy1r23knhkp1pn2lb"; depends=[]; }; ashr = derive2 { name="ashr"; version="2.2-7"; sha256="1bgkzab7f7fqi259vxrpkxq8yzhh1sl3mqdzc73dk54c5849b2pz"; depends=[assertthat doParallel etrunct foreach Matrix pscl Rcpp SQUAREM truncnorm]; }; - asht = derive2 { name="asht"; version="0.9.3"; sha256="075gzxly8sqkbwnznxcr4z3zs1qvlyl8c4ishgxk035ik1w6p16n"; depends=[bpcp coin exact2x2 exactci perm ssanv]; }; + asht = derive2 { name="asht"; version="0.9.4"; sha256="1aq384vgf26ig3isyp99z09glcjhl2qd43kp8qdcwk75dcrmxd7z"; depends=[bpcp coin exact2x2 exactci perm ssanv]; }; aslib = derive2 { name="aslib"; version="0.1"; sha256="0dkb6bb6dqavjklbciqxqhi3fdqib9asdnhiap2gp9b9wfnkyq7k"; depends=[BatchExperiments BatchJobs BBmisc checkmate corrplot ggplot2 llama mlr parallelMap ParamHelpers plyr reshape2 RWeka stringr yaml]; }; - asnipe = derive2 { name="asnipe"; version="1.1.9"; sha256="0r6hajdvasvik2ij58xm5kvlcz2gqzgqbvw0ypghrp0qkfqxkrla"; depends=[MASS Matrix]; }; + asnipe = derive2 { name="asnipe"; version="1.1.10"; sha256="1n53aqajra3rp202jz1xciw7nppicxkpiq4ybay768n3mxlvlhjr"; depends=[MASS Matrix]; }; aspace = derive2 { name="aspace"; version="3.2"; sha256="1g51mrzb6amafky2kg2mx63g6n327f505ndhna6s488xlsr1sl49"; depends=[Hmisc shapefiles splancs]; }; aspect = derive2 { name="aspect"; version="1.0-5"; sha256="0pbc0daxw20xcbgqyyd5gbs9kmbaf2dq8ajllx0mnfwdcak9jfgj"; depends=[]; }; aspi = derive2 { name="aspi"; version="0.2.0"; sha256="0rhvxw243vvdv3hxa6pi343gcjc2cbxq1jzqirl9k1l4i3897l87"; depends=[]; }; @@ -4386,14 +4564,14 @@ in with self; { assertable = derive2 { name="assertable"; version="0.2.4"; sha256="1d1mc5k9jwn2h5bny3bpkwy10kfz5qlp03z12z9401v47q12d61i"; depends=[data_table]; }; assertive = derive2 { name="assertive"; version="0.3-5"; sha256="0blbbhlxcb5ffdxqxi62xs33ljiawh6s22a0pyvbbh79jf46rzr3"; depends=[assertive_base assertive_code assertive_data assertive_data_uk assertive_data_us assertive_datetimes assertive_files assertive_matrices assertive_models assertive_numbers assertive_properties assertive_reflection assertive_sets assertive_strings assertive_types knitr]; }; assertive_base = derive2 { name="assertive.base"; version="0.0-7"; sha256="1xs3ysvj0z57c58jw57pckq2rynia6ks4rmjmc02alczhk54wbgh"; depends=[]; }; - assertive_code = derive2 { name="assertive.code"; version="0.0-1"; sha256="0drdrc9ljznkz52lvpwx0mvrghl0wf6dffzc3msz8lnvraxmanyw"; depends=[assertive_base assertive_properties assertive_types]; }; + assertive_code = derive2 { name="assertive.code"; version="0.0-3"; sha256="1qhbp668zfvhqs8avkhg9amp4zyazz6dsy4fc6kpdmw3sv8yi07g"; depends=[assertive_base assertive_properties assertive_types]; }; assertive_data = derive2 { name="assertive.data"; version="0.0-1"; sha256="0pjw7rf76d99awd8i4krmhbyks39lx89c9pb4j49nmz3w6x3z233"; depends=[assertive_base assertive_strings]; }; - assertive_data_uk = derive2 { name="assertive.data.uk"; version="0.0-1"; sha256="0z2hpvfl34zzy9sncmihcj1ir5nnm9d05j7ip7j83by2pfwsjdhf"; depends=[assertive_base assertive_strings]; }; - assertive_data_us = derive2 { name="assertive.data.us"; version="0.0-1"; sha256="0nfwfkaczbmxaj4bpyibcvsypigkn5j2syn2wb4d2grm7virk9bk"; depends=[assertive_base assertive_strings]; }; + assertive_data_uk = derive2 { name="assertive.data.uk"; version="0.0-2"; sha256="1fzjvhwp7mwkqqix29khvs6zcrc82n6j4czvzzb473vyjyvdlj5b"; depends=[assertive_base assertive_strings]; }; + assertive_data_us = derive2 { name="assertive.data.us"; version="0.0-2"; sha256="1bgspn0sccmp9z7s7djvdvprgxlyc5vrxznp4zfjb79kwvgn83hq"; depends=[assertive_base assertive_strings]; }; assertive_datetimes = derive2 { name="assertive.datetimes"; version="0.0-2"; sha256="00a98fx8p3pr3ckayh8wmxmm4rz01s67wah9697m92yci6pv3m78"; depends=[assertive_base assertive_types]; }; assertive_files = derive2 { name="assertive.files"; version="0.0-2"; sha256="02pfz8j5vwcj5kl6zca46894li7lxwnlrr29j922f14ay6kdssmy"; depends=[assertive_base assertive_numbers]; }; assertive_matrices = derive2 { name="assertive.matrices"; version="0.0-1"; sha256="1vk0i860r87rc5x0navai8xx9ixqyp96waxlk6j5p8y8hrpiyyif"; depends=[assertive_base]; }; - assertive_models = derive2 { name="assertive.models"; version="0.0-1"; sha256="1pkyssavld57njmv545bfa3a7dmyrgpsvr9vdhqmrmcpc55w89cj"; depends=[assertive_base]; }; + assertive_models = derive2 { name="assertive.models"; version="0.0-2"; sha256="0bn4j4v5qvb2d672cgri61p8d9v258pmz35y3lvm6b9mdxwdi9mr"; depends=[assertive_base]; }; assertive_numbers = derive2 { name="assertive.numbers"; version="0.0-2"; sha256="0jc3ss64j4m7bjydhagwwmka5n7c72vpw4kfcch0m5jvkq5qrqds"; depends=[assertive_base]; }; assertive_properties = derive2 { name="assertive.properties"; version="0.0-4"; sha256="0sqs54acs9qk9kvm32rxzfbzxz1l8mjahpfnw7r30z2brgz661jw"; depends=[assertive_base]; }; assertive_reflection = derive2 { name="assertive.reflection"; version="0.0-4"; sha256="19zmsbn00crfqm0kwd9ys5gv87xs3gi6wmlikrz9xiwzm7hp4dhj"; depends=[assertive_base]; }; @@ -4406,7 +4584,7 @@ in with self; { assist = derive2 { name="assist"; version="3.1.3"; sha256="0ngnn75iid5r014fcly29zhcfpqkqq24znncc3jdanbhdmfyybyz"; depends=[lattice nlme]; }; assocInd = derive2 { name="assocInd"; version="1.0.1"; sha256="16yzgvlqbapjhvzm5nw8vfrhh8mp9llnhck4bpgmszyrh93z1ha5"; depends=[]; }; assortnet = derive2 { name="assortnet"; version="0.12"; sha256="1vyzrb8vsi9pcdn6jd83k77bg0q2a3dwdvlnmxnshqiif2pakb8m"; depends=[]; }; - aster = derive2 { name="aster"; version="0.9.1.1"; sha256="12zn3wcx0n37fbnwwcz517libsgkbfphwbr4m68zba4craqhh5mi"; depends=[trust]; }; + aster = derive2 { name="aster"; version="1.0-2"; sha256="1yxa8b19g1acvn7mcj6l53x0cvb66dmjwrpmxb2y6k8da95hc9lp"; depends=[trust]; }; aster2 = derive2 { name="aster2"; version="0.3"; sha256="17d200sg0vn1fj6lb480dhszm70q6ipjldilb3x0jp72hiczakk9"; depends=[Matrix]; }; astro = derive2 { name="astro"; version="1.2"; sha256="1c7zrycgj2n8gz50m94ys1dspilds91s1b2pwaq6df1va17pznby"; depends=[MASS plotrix]; }; astroFns = derive2 { name="astroFns"; version="4.1-0"; sha256="0g5q0y067xf1ah91b4lg8mr9imj0d6lgig7gbj3b69fn335k363g"; depends=[]; }; @@ -4416,53 +4594,60 @@ in with self; { astsa = derive2 { name="astsa"; version="1.8"; sha256="023nk6chyy79scjzhv42px5cpym7rnm1c55ylcslyjdmlr5i6afk"; depends=[]; }; asus = derive2 { name="asus"; version="1.0.0"; sha256="16hp8xajb631a5amm1cvhzq8z4cwh1vjiavv3n11fzpxyskhmfrb"; depends=[rwt wavethresh]; }; asymLD = derive2 { name="asymLD"; version="0.1"; sha256="1q05pxwn6arpalspgf2m0cym4ivnwyv94i58k9kaihd37kvm5lgc"; depends=[]; }; - asymmetry = derive2 { name="asymmetry"; version="1.2.5"; sha256="0wsmarmij4crhv5wr4mqibsf787cy7fmmp4xrclsb3gm3g1xwvzz"; depends=[gplots rJava smacof]; }; + asymmetry = derive2 { name="asymmetry"; version="2.0"; sha256="02l9sg4f7i0mxzh4p7r930fswy4b04dv0icm7f2h1rldsnswh2sk"; depends=[gplots smacof]; }; asympTest = derive2 { name="asympTest"; version="0.1.4"; sha256="02l07psiy1888zx86j2r1l5lznz47wdmzbh39pd2nbj8r9i80szr"; depends=[]; }; asypow = derive2 { name="asypow"; version="2015.6.25"; sha256="0il38djkmw5ka7czpalmhq6yycx7flpdpgbd7p5nx52rsjdv49mj"; depends=[]; }; + atable = derive2 { name="atable"; version="0.1.0"; sha256="0q3vy42a09sayb69f5fihfrkrsp3cz4380hb9f35ggkyi9v2d7nk"; depends=[DescTools doBy effsize Hmisc plyr reshape2 settings]; }; atlantistools = derive2 { name="atlantistools"; version="0.4.3"; sha256="06rb0c4ralx55mdlqwpjzim0inxif4cdi9732v4h1ll8jhlm5v7d"; depends=[circlize dplyr ggplot2 gridExtra lazyeval magrittr proj4 purrr RColorBrewer RNetCDF rvest scales stringr tibble tidyr xml2]; }; - atlas = derive2 { name="atlas"; version="0.6.0"; sha256="0phpninwqqibafq88s3kwlv84506l2jxaz0hvcwd5hknvydcf6ib"; depends=[httr testthat]; }; + atlas = derive2 { name="atlas"; version="1.0.0"; sha256="02wm22j40llmdi6z3rzgbc5fpkzmjfq0xar33bypvj1dx1zxygnd"; depends=[httr testthat]; }; atmcmc = derive2 { name="atmcmc"; version="1.0"; sha256="05k69b5wlysz3kh0yiqvshgvr0nyz34zkvn6bjs30cwz7s9j21pn"; depends=[]; }; + atmopt = derive2 { name="atmopt"; version="0.1.0"; sha256="1h79ngq1236gz4w29fs3nj46a3m1x8a28z3xnhc6wn3a46cf8zzi"; depends=[DoE_base gtools hierNet]; }; atsd = derive2 { name="atsd"; version="1.2.0"; sha256="0jan8r5f2r3l2xpdf9rrv4smkr2l645rfdgdfjb1xa54jd3pqvqs"; depends=[httr RCurl]; }; attempt = derive2 { name="attempt"; version="0.2.1"; sha256="0366sq1mf3d0amf6yfa42gw1gwwr9rbbqnqvr8hai1bfl672zkcp"; depends=[rlang]; }; attrCUSUM = derive2 { name="attrCUSUM"; version="0.1.0"; sha256="113y40v9hyvnvvzvyqg81n0n1h84pj4zph5q8p0vc0384hw00544"; depends=[Rcpp RcppArmadillo]; }; attribrisk = derive2 { name="attribrisk"; version="0.1"; sha256="1zqx53mxz2hh9jyanf3jkadgpj44jbqrk4p13fas91zvhpw9pn5s"; depends=[boot survival]; }; - atus = derive2 { name="atus"; version="0.1"; sha256="15arijdfyci43k0a32zc8qmm73fmzrr3ghhxw0kgipdr3w5xcmz3"; depends=[]; }; + atus = derive2 { name="atus"; version="0.2"; sha256="1i67rx8p5v4shgbfcym4lbnlw55xx7w2fdzhgsgjjyfpwbpm7h4h"; depends=[]; }; auRoc = derive2 { name="auRoc"; version="0.1-0"; sha256="1ijk127p6g5mzc7b4b9lnjnfzvklz3g8w6bckrdahlw7djd9mgz1"; depends=[coda MBESS ProbYX rjags]; }; aucm = derive2 { name="aucm"; version="2018.1-24"; sha256="0x10dawlwxqywjl7mxc2gpp2r4wnd7pb6n80xlrb9yywm7zbb6x2"; depends=[kyotil]; }; auctestr = derive2 { name="auctestr"; version="1.0.0"; sha256="15b1x0c9yhl91gir7jmivp8vxzc8q7wvb0mgam9454avc6l29x4y"; depends=[dplyr tidyr]; }; audio = derive2 { name="audio"; version="0.1-5.1"; sha256="1imh2l43n1cvwzzby598qn59rsm5262snril6b98hyih7mw7fyad"; depends=[]; }; audiolyzR = derive2 { name="audiolyzR"; version="0.4-9"; sha256="09jsrjy15vcn6da0kgk06ghayyrf3s853gqv8qdawg745ky2hbgi"; depends=[hexbin plotrix RJSONIO]; }; audit = derive2 { name="audit"; version="0.1-1"; sha256="0hrcdcwda5c0snskrychiyfjcbnymkcl2x43bapb6inw9y8989qv"; depends=[]; }; - auditor = derive2 { name="auditor"; version="0.2.1"; sha256="0kpadjzfnahrbryn2zh0zxb93wivlbnznrgad3025mf1qabm3xnr"; depends=[car factoextra fdrtool GGally ggplot2 ggrepel hnp plotROC ROCR tseries]; }; - augSIMEX = derive2 { name="augSIMEX"; version="2.0"; sha256="0j0izfk1hdzzn1s7gd64q56x8ws8nvpzh7a8d13gzwxi9dhvkzvf"; depends=[MASS Rcpp rootSolve]; }; - auk = derive2 { name="auk"; version="0.2.1"; sha256="18vqvjksnllbkwfskiv8cv0dbw92nzkxwb0rj14sxxw8y55hybyy"; depends=[assertthat countrycode dplyr rlang stringi stringr tidyr]; }; + auditor = derive2 { name="auditor"; version="0.3.1"; sha256="1ndd5a5264b91qaw0qj9rwjvhn9lgw7y5dirjqlzkib6q9mcyanq"; depends=[car factoextra fdrtool GGally ggplot2 ggrepel gridExtra hnp plotROC ROCR tseries]; }; + augSIMEX = derive2 { name="augSIMEX"; version="3.0"; sha256="0fjs77v6hrrzw683v6bmgiz787jfcn84nfjlkfp3vad8v2fqa84c"; depends=[Formula MASS Rcpp rootSolve]; }; + augmentedRCBD = derive2 { name="augmentedRCBD"; version="0.1.0"; sha256="0kxhrz6s2njfj9b20mqmlgs7hy2227vrj00048cf8447l3y2a9lj"; depends=[dplyr emmeans flextable ggplot2 moments multcomp multcompView officer Rdpack reshape2 stringi]; }; + auk = derive2 { name="auk"; version="0.3.0"; sha256="0sxc18w377f86f096g06xw8a8iwfpzxc5xwn4337wycns3xwd8r4"; depends=[assertthat countrycode dplyr httr rlang stringi stringr tidyr]; }; aurelius = derive2 { name="aurelius"; version="0.8.4"; sha256="00bpf9sggvnajpmg3zsdgfjinkb6wbrcf1ris7qfhh1rp5rz4m4m"; depends=[gbm glmnet jsonlite]; }; auto_pca = derive2 { name="auto.pca"; version="0.3"; sha256="01m2ldpcxzj7fhgmr9wp4ha3gqdyh7l5bkrnw83smcbq5229hsyy"; depends=[plyr psych]; }; autoBagging = derive2 { name="autoBagging"; version="0.1.0"; sha256="01k44rgkpbbr3m2x360aq0fz2qi7nz036g5dsh2y3jy94rmddbyy"; depends=[abind caret cluster CORElearn e1071 entropy infotheo lsr MASS minerva party rpart xgboost]; }; autoFRK = derive2 { name="autoFRK"; version="1.0.0"; sha256="10vmgcpj2n5w9g4bjq2g3bz3n3x9b6h35w4qfr13v2sdzp3gz5da"; depends=[fields filehash filehashSQLite filematrix FNN LatticeKrig MASS Rcpp RcppEigen RcppParallel RSpectra spam]; }; + autocogs = derive2 { name="autocogs"; version="0.1.1"; sha256="0p5z4gnairar1g7fpf3cm7iy5kgx66k8zhkqxx1hjdhjqjqp4w0g"; depends=[broom checkmate diptest dplyr ggplot2 hexbin MASS mclust moments progress tibble]; }; autoencoder = derive2 { name="autoencoder"; version="1.1"; sha256="0ly1aanayk28nx6yqfhl7d0zm4vg6rfjikf5ibn8zhmkrfyflj1y"; depends=[]; }; autoimage = derive2 { name="autoimage"; version="2.0"; sha256="102f7wkrglsvdrsmyy79v0w7za5b79sn59czxzhriwrp4mrpdl47"; depends=[fields ggplot2 mapproj maps MBA viridisLite]; }; automagic = derive2 { name="automagic"; version="0.3"; sha256="0yzv0ianfq217jvz7rba86bcmxh09p513khvq6jk5k7isblvn0qd"; depends=[devtools dplyr formatR githubinstall knitr magrittr pacman purrr remotes yaml]; }; automap = derive2 { name="automap"; version="1.0-14"; sha256="1190kbmp0x80x0hyifdbblb4ijq79kvrfn9rkp5k6diig4v30n0w"; depends=[gstat lattice reshape sp]; }; + automl = derive2 { name="automl"; version="1.0.6"; sha256="0g7yki465syazji93z0jx39gg99dynhbm1b18blg493grphk0r7h"; depends=[]; }; automultinomial = derive2 { name="automultinomial"; version="1.0.0"; sha256="15cxnqaai2dln6jvk7lpfqvlpv5237zn18axp459p5zxcgg0lw88"; depends=[Hmisc igraph MASS Matrix]; }; autoplotly = derive2 { name="autoplotly"; version="0.1.2"; sha256="0ajzzj9w9f0v9n37liml63hq5xwkqq53lw85p0a2h99n4lg2hdg8"; depends=[ggfortify ggplot2 plotly]; }; autopls = derive2 { name="autopls"; version="1.3"; sha256="1qf5gk1vsz1p5670w7bgzh3b15wvrx1gy6ih4sivw0vj8bcjxbw9"; depends=[pls]; }; autoshiny = derive2 { name="autoshiny"; version="0.0.2"; sha256="0s06ynnirgsh19x8qq4020piirkhvjqpvz372syygvlal062y6cn"; depends=[shiny]; }; - autothresholdr = derive2 { name="autothresholdr"; version="1.2.0"; sha256="09wpyirsqw0s4b5221ksr0v0srrq24c6ca8kr5m4hr4ps728np0p"; depends=[checkmate filesstrings ijtiff magrittr Rcpp]; }; + autothresholdr = derive2 { name="autothresholdr"; version="1.2.1"; sha256="0jbqadhpmd3fq8i7ncwv98s12wcsrvvgk0dw2qgpg9f2d2k2gnb1"; depends=[checkmate filesstrings ijtiff lattice magrittr Rcpp]; }; autovarCore = derive2 { name="autovarCore"; version="1.0-4"; sha256="0i5fvx0z2kri0c855q40hd596kfjhmwpp2zw7d7k0xvk2xbcgbiv"; depends=[Amelia jsonlite Rcpp urca vars]; }; - available = derive2 { name="available"; version="1.0.0"; sha256="0w4i0ajw0p71k717v8hg9d8az08m8yl97w5lly87kli36p7mv30h"; depends=[cli clisymbols crayon desc glue jsonlite memoise purrr SnowballC stringdist tibble tidytext udapi yesno]; }; + av = derive2 { name="av"; version="0.2"; sha256="0vw6136sh1rgsah10xrcrgrpb6rpf5l8vixs950yq51syxc1y2qc"; depends=[]; }; + available = derive2 { name="available"; version="1.0.1"; sha256="0bijr3prl1bqkc34yn6g39gh9ig4xxynyglmw7di2l5ivp62rskl"; depends=[cli clisymbols crayon desc glue jsonlite memoise SnowballC stringdist tibble tidytext udapi yesno]; }; averisk = derive2 { name="averisk"; version="1.0.3"; sha256="02j27d4jxgy2bk5sgxp1xdfyqr321civs99qj0g8cp34gwqk0j3m"; depends=[MASS]; }; - aws = derive2 { name="aws"; version="1.9-6"; sha256="0mfq44pji0p6d7s1wbwi0f97lsh3f33wnj8fiyimpg9fv8lr4inz"; depends=[awsMethods gsl]; }; + aws = derive2 { name="aws"; version="2.2-0"; sha256="0kf79jnr3zn02b3bsq68mhhgxm2j10l6z14idvcbh3xiyyfaig5b"; depends=[awsMethods gsl]; }; aws_alexa = derive2 { name="aws.alexa"; version="0.1.6"; sha256="0c2yl023g2m4kqhhv4nbysjmp103aj3pk17dwyb9nrkpj9qm8zsh"; depends=[aws_signature dplyr httr xml2]; }; aws_cloudtrail = derive2 { name="aws.cloudtrail"; version="0.1.5"; sha256="0p7qj9ivs14ska11a9qni4n0f8d05c1p126zvlxj9038c9p0y1wx"; depends=[aws_s3 aws_signature httr jsonlite]; }; aws_comprehend = derive2 { name="aws.comprehend"; version="0.1.2"; sha256="0480ggfdmcv2pkjzmwh40h4nd87qswrpwr6h3j959f9y8zmzfd7n"; depends=[aws_signature httr jsonlite]; }; - aws_ec2metadata = derive2 { name="aws.ec2metadata"; version="0.1.4"; sha256="08l1gnqn2l6f6rkh21v1my2jp5bbzwnq38swymwl94jbnvnlrasw"; depends=[curl jsonlite]; }; + aws_ec2metadata = derive2 { name="aws.ec2metadata"; version="0.1.5"; sha256="077vp2djy2y37vkhvadbbaizfkx4qm86fm336idvrv36q8lcrl1v"; depends=[curl jsonlite]; }; aws_iam = derive2 { name="aws.iam"; version="0.1.7"; sha256="0hag8j5g8rqg39x4f6d8vwwzhz98cx7549xixfl9cxiff7x9sz2c"; depends=[aws_signature httr jsonlite xml2]; }; + aws_kms = derive2 { name="aws.kms"; version="0.1.2"; sha256="1bg1csdlwgaw928jschq1pxhg1ibrzy2q85vvc2zhlfd6c6xif3d"; depends=[aws_signature base64enc httr jsonlite]; }; aws_lambda = derive2 { name="aws.lambda"; version="0.1.6"; sha256="16vis596clxn6h9j1k66224ikacsg0f9xrzqi5987nqlzrwskjgk"; depends=[aws_signature base64enc httr jsonlite]; }; aws_polly = derive2 { name="aws.polly"; version="0.1.2"; sha256="0ij0rbng8q7xfa08p4x1l1lcmskmz3fy2pvln28zxqbs6jbc22rm"; depends=[aws_signature httr jsonlite tuneR]; }; aws_s3 = derive2 { name="aws.s3"; version="0.3.12"; sha256="1yfi9ihrd0hmzxklc86mf5hcwgzsb5c4p1i402vgpg5mfvcvp3rl"; depends=[aws_signature base64enc digest httr xml2]; }; aws_ses = derive2 { name="aws.ses"; version="0.1.4"; sha256="13hf4iqhnpkm9rnr7nzwky663vplnkjrgk90zix91cn2fvaspjgp"; depends=[aws_signature httr jsonlite]; }; - aws_signature = derive2 { name="aws.signature"; version="0.4.1"; sha256="094d0jwg6433bdfkvs3r9mjvg61k78ff4ck0zhgyaz4aivlchm9j"; depends=[base64enc digest]; }; + aws_signature = derive2 { name="aws.signature"; version="0.4.4"; sha256="18w4m7ald8ira59mrvhppzs0vfafi8xwqn7xrwl3hhsj855nzmyc"; depends=[base64enc digest]; }; aws_sns = derive2 { name="aws.sns"; version="0.1.7"; sha256="0i8nn5jnykhsjwn4nsqdqbagankjc09zs8and54rkirdigzdny8v"; depends=[aws_signature httr jsonlite xml2]; }; aws_sqs = derive2 { name="aws.sqs"; version="0.1.10"; sha256="09sh3injb4kfrq5al7hmbnqdn5v5hnjkqqsz86vpi4154435ymdg"; depends=[aws_signature httr jsonlite xml2]; }; aws_transcribe = derive2 { name="aws.transcribe"; version="0.1.2"; sha256="12qz7j535aqxcvcawj4iqycbcmlba32sdl8qj2cw6rq5rgm55xaz"; depends=[aws_signature httr jsonlite]; }; @@ -4473,10 +4658,12 @@ in with self; { b6e6rl = derive2 { name="b6e6rl"; version="1.1"; sha256="17scdskn677vaxx1h2jypqaffvjgczryplg17nr3wigi1x0cxg7a"; depends=[]; }; bPeaks = derive2 { name="bPeaks"; version="1.2"; sha256="1z6jghcmw0lwv17ms7gdp5zzimaawq3ahbwkxa4062g373592smd"; depends=[]; }; bReeze = derive2 { name="bReeze"; version="0.4-2"; sha256="04zapsxb4lsi85m9qgrsm49yasf0b8wk0djdpa7xks4hjvmskfhq"; depends=[]; }; - bWGR = derive2 { name="bWGR"; version="1.5.3"; sha256="0kgl29kmpdbzjhbwv8kdy2lygza06fb90hqr7vwbgyl4fw049k9p"; depends=[Rcpp]; }; + bWGR = derive2 { name="bWGR"; version="1.5.6"; sha256="1c0f3y30gynvlf70fakhspp91q5fdq9b4hii18i1qq89162qgnd8"; depends=[Rcpp]; }; + baRcodeR = derive2 { name="baRcodeR"; version="0.1.0"; sha256="0csg696zkbnfryzaayq7vf7zvsfixxqm4mc12f553igza9yyg7vk"; depends=[DT ggplot2 miniUI qrcode shiny]; }; babar = derive2 { name="babar"; version="1.0"; sha256="13j5klrcnd4dwrgdbxlvwcj56l9mzi4j9ga6jj5i04pgdc6vsfx5"; depends=[]; }; babel = derive2 { name="babel"; version="0.3-0"; sha256="1iwvx69051yhlxbcl6bypvc3mcih0q8bf3i29r3i79356hp12xqa"; depends=[edgeR]; }; babynames = derive2 { name="babynames"; version="0.3.0"; sha256="018wyajdkpvcywcvkna57m5sqnsh7i9zq2hqlyb8q93mgyb3ddzm"; depends=[tibble]; }; + bacistool = derive2 { name="bacistool"; version="0.9.8"; sha256="1yq7d2657l6iyy5v094c9rwphbpyhnijhwvacwhb07k6c6h069wh"; depends=[rjags]; }; backShift = derive2 { name="backShift"; version="0.1.4.2"; sha256="1nj7mcdpzfzq68qg86rrys752gzw69n99yyb0jzg6r8qrgpcxj49"; depends=[clue ggplot2 igraph MASS matrixcalc mvnmle reshape2]; }; backblazer = derive2 { name="backblazer"; version="0.1.0"; sha256="020kdydksm0brnxsa00blf5sylxd4hz49wmngk1x1fx43kdlyc41"; depends=[httr jsonlite openssl]; }; backpipe = derive2 { name="backpipe"; version="0.2.3"; sha256="12k2cv9x8h0b002m9c8g4vj5a7chp4b8jqz377ia0diqw89dydpm"; depends=[]; }; @@ -4488,17 +4675,20 @@ in with self; { bagRboostR = derive2 { name="bagRboostR"; version="0.0.2"; sha256="1k9w98p3ad3myzyqhcrc4rsn7196qvhnmk5ddx3fpd1rdvy2dnby"; depends=[randomForest]; }; bairt = derive2 { name="bairt"; version="0.1.2"; sha256="17nc0lp0bzwshik33v0gq5d6nd2gvm4799b7rfiq089zhnzv90kj"; depends=[coda mvtnorm shiny shinyjs]; }; baitmet = derive2 { name="baitmet"; version="1.0.1"; sha256="02ydakqr8v41hdnhcsgigwnic8d48qswryg1srb5w1fqdmdglnkl"; depends=[erah HiClimR Rcpp signal XML]; }; - ballr = derive2 { name="ballr"; version="0.2.0"; sha256="1f5fclmgp0pznahr3ix7xiixqah01jmh2g6fvrqyi6xcin8ynwqc"; depends=[dplyr janitor lubridate magrittr rlang rvest xml2]; }; - bamboo = derive2 { name="bamboo"; version="0.9.22"; sha256="1fajc4880wkpxjdgh41r2fq95dllpk1irbrkvrrwvb0pf3zbmjsl"; depends=[rscala]; }; - bamdit = derive2 { name="bamdit"; version="3.1.0"; sha256="148ikj7mly8m6kxs2n4gidi7kb70i3x2vbf9xsllrf0cgvrjccps"; depends=[ggExtra ggplot2 gridExtra MASS R2jags rjags]; }; - bamlss = derive2 { name="bamlss"; version="1.0-0"; sha256="0wa54f5zyjyplys29cqhrasc6qa8p5znfal2ihp0qhhs46wzsk4y"; depends=[coda colorspace Formula Matrix MBA mgcv mvtnorm sp survival]; }; + balance = derive2 { name="balance"; version="0.1.6"; sha256="12m4kqmdix9x42lgi6pm75hw3sphj7hn7shkfa9v53074dgajyjh"; depends=[ggplot2]; }; + ballr = derive2 { name="ballr"; version="0.2.2"; sha256="0iragzlw3fp02nj9l9smzxykgkd9vsq4g1lpkj88bs3wkynj112j"; depends=[dplyr janitor lubridate magrittr rlang rvest xml2]; }; + bamboo = derive2 { name="bamboo"; version="0.9.23"; sha256="02mvj78kkcpa0bszf8jd0s7nvjwhgbxhgazqssw0fjifs2iqr2zn"; depends=[rscala]; }; + bamdit = derive2 { name="bamdit"; version="3.2.1"; sha256="18l9kd3a0d4y6z38k9nm18j32g6dxmwylv8cv1wp3fzffv51lm1s"; depends=[ggExtra ggplot2 gridExtra MASS R2jags rjags]; }; + bamlss = derive2 { name="bamlss"; version="1.0-1"; sha256="1nxy8a075dhdwz9jhyicqj1naz95w0mns64c6j59gpzwp03nvml4"; depends=[coda colorspace Formula Matrix MBA mgcv mvtnorm sp survival]; }; banR = derive2 { name="banR"; version="0.2.0"; sha256="0m71m99f8f4wckylry6z16gw6r2cc4wxbd9287ns00jr6s13x6c8"; depends=[dplyr httr magrittr purrr readr rlang stringr tibble]; }; bandit = derive2 { name="bandit"; version="0.5.0"; sha256="03mv4vbn9g4mqikd9map33gmw2fl9xvb62p7gpxs1240w5r4w3fp"; depends=[boot gam]; }; bang = derive2 { name="bang"; version="1.0.0"; sha256="16wy2imrdvhpdzi6ix9k69afqdyc44d1xr655yd3q1cl12x1nr04"; depends=[bayesplot rust]; }; bannerCommenter = derive2 { name="bannerCommenter"; version="0.1.0"; sha256="0ycx771g9a73w0sx8zzix8kswwbjagzhbyvaq7l5r8a9ayfli8ic"; depends=[]; }; + banter = derive2 { name="banter"; version="0.9.3"; sha256="1ziys0zy66477ynr8rp2kv7w82n6226whn47aa06kkb4nhcqfk2c"; depends=[dplyr ggplot2 gridExtra magrittr plyr randomForest ranger rfPermute rlang tibble tidyr]; }; banxicoR = derive2 { name="banxicoR"; version="0.9.0"; sha256="0vchm2hnqm45fhn8k38rcam4vkazmifcl40390s2r04bgvqr0pnl"; depends=[rvest stringr xml2]; }; bapred = derive2 { name="bapred"; version="1.0"; sha256="08kvc4cc984jv08ikwbja8zxidrcdiwi5w88hlqakbm8yc6hzssa"; depends=[affy affyPLM Biobase FNN fuzzyRankTests glmnet lme4 MASS mnormt sva]; }; barcode = derive2 { name="barcode"; version="1.1"; sha256="14zh714cwgq80zspvhw88cs5b82gvz4b6yfbshj9b7x0y2961nxd"; depends=[lattice]; }; + barsurf = derive2 { name="barsurf"; version="0.1.0"; sha256="0lz87lzs4fs9rbc0p8a92li5cj1cd8va5rgp9s0n96rwmzmdkz63"; depends=[]; }; bartMachine = derive2 { name="bartMachine"; version="1.2.4.2"; sha256="100zcpbndbps01qnybrgmsfnh37j93661l4v7zcin0i56cvgg998"; depends=[bartMachineJARs car missForest randomForest rJava]; }; bartMachineJARs = derive2 { name="bartMachineJARs"; version="1.1"; sha256="1wpfzrb6mrx3xmxy4rgnwygmpqq2l4ki2xqr4m51g1bl9nwirhzj"; depends=[rJava]; }; basad = derive2 { name="basad"; version="0.2.0"; sha256="1qc2amkrjrgdqys275p82lmbpjszm5rzjdpri7hqc9d8b8q1vc9q"; depends=[Rcpp RcppEigen rmutil]; }; @@ -4507,75 +4697,82 @@ in with self; { base64enc = derive2 { name="base64enc"; version="0.1-3"; sha256="13b89fhg1nx7zds82a0biz847ixphg9byf5zl2cw9kab6s56v1bd"; depends=[]; }; base64url = derive2 { name="base64url"; version="1.4"; sha256="0n1c2b68vza1dh7sk38v6biiwm72c4jpl79kpdg1bsb0hq9qy18x"; depends=[backports]; }; baseballDBR = derive2 { name="baseballDBR"; version="0.1.2"; sha256="0w54g1avcqamc12lmvjchlqbqck9jfjccm441k03nsql460mpydq"; depends=[dplyr magrittr rvest xml2]; }; - basefun = derive2 { name="basefun"; version="1.0-1"; sha256="0qiszm71alh7p3inhiv9prdl4f5l45ny8plz2fm7l5h51z5xj54r"; depends=[Matrix orthopolynom polynom variables]; }; + basefun = derive2 { name="basefun"; version="1.0-2"; sha256="16j7lzpyiw9iw3zb1cw2l685303dljv93kdxgfdzajzgcmmmpr6m"; depends=[Matrix orthopolynom polynom variables]; }; baseline = derive2 { name="baseline"; version="1.2-1"; sha256="1vk0vf8p080ainhv09fjwfspqckr0123qlzb9dadqk2601bsivgy"; depends=[SparseM]; }; - basicTrendline = derive2 { name="basicTrendline"; version="1.0.1"; sha256="0rsmlp70ylpkqv437jcy3skwbfkj4xwkpjb2q79b9n8kw2ir0716"; depends=[]; }; + basicMCMCplots = derive2 { name="basicMCMCplots"; version="0.1.0"; sha256="033m0z7xj5lvzfw7g54ls99ii2wj5hwk5lhids124ax8ckqzspii"; depends=[]; }; + basicTrendline = derive2 { name="basicTrendline"; version="2.0.3"; sha256="10rq9hriyn50b28ikvl0vsvchbkrc0pjzxamq4ix1xd04n4drkl9"; depends=[investr scales]; }; basicspace = derive2 { name="basicspace"; version="0.20"; sha256="0nyljk8ydasirgv7ijxplyhk10s8m9k3rw5qmgf0z81dm7p257wc"; depends=[]; }; basictabler = derive2 { name="basictabler"; version="0.1.0"; sha256="1m4cgghfh3aixsnwjlbaj3prnnqxhij60bakz9vdr5dvnqg92an9"; depends=[dplyr htmltools htmlwidgets jsonlite R6]; }; bastah = derive2 { name="bastah"; version="1.0.7"; sha256="08xdba16wj0inp0kq2sbcrdr6wj8bwlq7rqnfrzjrz03wxhc5bk0"; depends=[BigQuic foreach glmnet lars MASS Matrix scalreg]; }; batade = derive2 { name="batade"; version="0.1"; sha256="1lr0j20iydh15l6gbn471vzbwh29n58dlpv9bcx1mnsqqnsgpmal"; depends=[hwriter]; }; batch = derive2 { name="batch"; version="1.1-5"; sha256="0wdgfvk2i542cqg34ikvzwlix09f2jyjb32a0f4zh9vg9nrywswq"; depends=[]; }; batchmeans = derive2 { name="batchmeans"; version="1.0-3"; sha256="1qkdljngvlahk0pbrkarkjh2g4sxxwiva9f3m5y8gz8pjw9fpy9n"; depends=[]; }; - batchtools = derive2 { name="batchtools"; version="0.9.10"; sha256="0qgjag82z7s6s35lccpidkq5rivkz03gnmcggrgaa9vskv0w6q62"; depends=[backports base64url brew checkmate data_table digest fs progress R6 rappdirs stringi withr]; }; + batchtools = derive2 { name="batchtools"; version="0.9.11"; sha256="02mj21ypcjv5fs7ajf63p6bq0cyvihdl55hlpqx6kmsfjin1cr0v"; depends=[backports base64url brew checkmate data_table digest fs progress R6 rappdirs stringi withr]; }; batman = derive2 { name="batman"; version="0.1.0"; sha256="0ccgx506p4iri23k2ikb8jmh04dp08w66785bv52iy8kd359h43f"; depends=[Rcpp]; }; batteryreduction = derive2 { name="batteryreduction"; version="0.1.1"; sha256="0j838q7063bplkzd50kmnxji80cgysfsq7m1qifv8z7a2zsh8c8g"; depends=[pracma]; }; - bayesAB = derive2 { name="bayesAB"; version="1.1.0"; sha256="0g74n6jvpmb2sbmywcagb10rk8sd3pxzkw9s8s6qpg34q58v01a6"; depends=[ggplot2 Rcpp]; }; + bayesAB = derive2 { name="bayesAB"; version="1.1.1"; sha256="0kxrhxg43hzkcziyqpwy29iqs7i0qi3pn3jz0z1s8paf8drbgdf4"; depends=[ggplot2 Rcpp]; }; bayesCL = derive2 { name="bayesCL"; version="0.0.1"; sha256="1l278lxidn16nma2ny14wjajcqyzbr6j5xl2lj08cic26c7hvjbm"; depends=[]; }; - bayesDP = derive2 { name="bayesDP"; version="1.3.1"; sha256="175g75cpynccyzcbzca4h6xa2708985h8dhq34kvkpfhv35pc64d"; depends=[ggplot2 Rcpp RcppArmadillo survival]; }; + bayesDP = derive2 { name="bayesDP"; version="1.3.2"; sha256="1xv133v01mbfsy0w5acc9819m92dcxfdjg4a8p7kdfkycz4ilwnl"; depends=[ggplot2 Rcpp RcppArmadillo survival]; }; bayesDccGarch = derive2 { name="bayesDccGarch"; version="2.0"; sha256="1s2b8f43wi9ja966n2p2r4l4s79vk6xb8mqaxsagnw90g969p681"; depends=[coda numDeriv]; }; bayesDem = derive2 { name="bayesDem"; version="2.5-1"; sha256="1cxrqil1p692mbzkcj1fvsx335qyy6c1y43mq48s4shs1hhc69bn"; depends=[bayesLife bayesPop bayesTFR gWidgets gWidgetsRGtk2 RGtk2 wpp2015]; }; bayesGARCH = derive2 { name="bayesGARCH"; version="2.1.3"; sha256="1480mmzfshchfbfh3x420cq5qblfh59jkl21hkq2jvnwppksdn9w"; depends=[coda mvtnorm]; }; bayesGDS = derive2 { name="bayesGDS"; version="0.6.2"; sha256="0ash16hmassn76x3f59dfvp4plqp8vb17qzcwmag7vi3mi3y2ap6"; depends=[Matrix]; }; - bayesImageS = derive2 { name="bayesImageS"; version="0.5-2"; sha256="01gnjxrp68jxrygijk6v42dsiyfkxawvj4ilh0sajm05iknkn419"; depends=[Rcpp RcppArmadillo]; }; + bayesImageS = derive2 { name="bayesImageS"; version="0.5-3"; sha256="0whb3am92v95rhxnlpjl212jsy2r6pv35svj4lgl7p74300b25ra"; depends=[Rcpp RcppArmadillo]; }; bayesLife = derive2 { name="bayesLife"; version="3.2-0"; sha256="1a3x3y77542hgndvymhnyg6dys0s5rimkgprl8psflsgsrxnbmcv"; depends=[bayesTFR car coda hett wpp2017]; }; bayesLopod = derive2 { name="bayesLopod"; version="1.0.1"; sha256="0v9yy75mvr74jc0fz10qj1acwxjy0lbqkdqaj1hn88v294r9dw3q"; depends=[BH inline raster Rcpp RcppEigen rgeos rstan rstantools slam sp StanHeaders]; }; - bayesPop = derive2 { name="bayesPop"; version="6.2-4"; sha256="1z8s5lbvz642hxl10b4cv361izw82akq40dav3mknqqcgv1vlrk6"; depends=[abind bayesLife bayesTFR fields googleVis plyr reshape2 rworldmap wpp2012 wpp2017]; }; + bayesPop = derive2 { name="bayesPop"; version="7.0-0"; sha256="1ydr0hds09xa17117y9dvk2sym2jfk0yjip79dig9c2vsykns0cm"; depends=[abind bayesLife bayesTFR fields googleVis plyr reshape2 rworldmap wpp2012 wpp2017]; }; bayesQR = derive2 { name="bayesQR"; version="2.3"; sha256="1c6y7r9h9626ghp68pl5k1g0l95fwd6dp0jfznmhy53qza0ny8z4"; depends=[]; }; bayesSurv = derive2 { name="bayesSurv"; version="3.2"; sha256="1zp302pfi64nnqdiqldvfi1lm0wv2dplz5sfjp0ydl1qc16z0axp"; depends=[coda smoothSurv survival]; }; - bayesTFR = derive2 { name="bayesTFR"; version="6.1-2"; sha256="092sl8xk82kybpp0v06j0dxh4zal0d6j2na42ghl2ri36iy6wqvx"; depends=[coda MASS mvtnorm wpp2017]; }; + bayesTFR = derive2 { name="bayesTFR"; version="6.2-0"; sha256="0qgab56dk8pf2r6rl3h18lfh6xkdw9jn5va55iw20lc4a52miz64"; depends=[coda MASS mvtnorm wpp2017]; }; bayesammi = derive2 { name="bayesammi"; version="0.1.0"; sha256="1vfcmk47x71c5akj3ppxzb74293pikspknkkv08f8p15v0chk7fs"; depends=[dplyr ggplot2 lme4 magrittr MASS mvtnorm rlang rstiefel scales tibble tidyr tmvtnorm]; }; bayesbio = derive2 { name="bayesbio"; version="1.0.0"; sha256="08qa4lzkrcwin7n3kzfqfdlnlqahdmjl1lxpdh29n780cgyjfvs0"; depends=[]; }; bayesboot = derive2 { name="bayesboot"; version="0.2.2"; sha256="0976ryd0gbw3kpmxg2qxyp1m2swnrpa86vdhvqrqxp7fcrs8cs2z"; depends=[HDInterval plyr]; }; bayescount = derive2 { name="bayescount"; version="0.9.99-5"; sha256="0c2b54768wn72mk297va3k244256xlsis9cd6zn6q5n1l7ispj6j"; depends=[coda rjags runjags]; }; + bayesdfa = derive2 { name="bayesdfa"; version="0.1.0"; sha256="1ikladsmjw5y3hpjwmvn00wlg3fzgyzvwlrvkahdc5ni1mggh0fj"; depends=[BH dplyr ggplot2 loo Rcpp RcppEigen reshape2 rlang rstan StanHeaders]; }; bayesianETAS = derive2 { name="bayesianETAS"; version="1.0.3"; sha256="0nbif0b6lcik2kh948zg5ska5mvkdsfr0dg8ndnfpscm2mp7y1dg"; depends=[]; }; bayeslm = derive2 { name="bayeslm"; version="0.8.0"; sha256="1gvqkbz1wmqkxjwkdgj5pir5j1qy5dzjm4jv6mz3mplm16z5vzbl"; depends=[coda Rcpp RcppArmadillo RcppParallel]; }; bayesloglin = derive2 { name="bayesloglin"; version="1.0.1"; sha256="0j2ziahf6mwsz2gvb1azvdzlmszlpqgr5zqcqa68pxgq947sa2cs"; depends=[igraph]; }; bayeslongitudinal = derive2 { name="bayeslongitudinal"; version="0.1.0"; sha256="0g45ikpnbry1albb3asrzab5z3sy98yf74c64qn02d65xgafifwg"; depends=[LearnBayes MASS mvtnorm]; }; bayesm = derive2 { name="bayesm"; version="3.1-0.1"; sha256="04b4s8clxrmdyhnhd2arnsdi992422yam3z91w6dzrmngwxq4yaq"; depends=[Rcpp RcppArmadillo]; }; - bayesmeta = derive2 { name="bayesmeta"; version="2.2"; sha256="15pqa1plcnl8pbzs38cw22y3qq1v7f9vla4zy0154crvbrbp8kwf"; depends=[forestplot metafor]; }; + bayesmeta = derive2 { name="bayesmeta"; version="2.3"; sha256="12rljnlr7wv0q95ild7vrsbgkpg7zw1lmh6gx4kpip1ckax04360"; depends=[forestplot metafor]; }; bayesmix = derive2 { name="bayesmix"; version="0.7-4"; sha256="1qms1nnk2nq3gqr8zf2b9ri4wv8jrxv5i8s087k1rwdvya3k5r9a"; depends=[coda rjags]; }; - bayesplot = derive2 { name="bayesplot"; version="1.5.0"; sha256="1f0kgrgr87fp9576ssrygkp5n4186zq1rw5iwzhqr8s81is352li"; depends=[dplyr ggplot2 ggridges reshape2 rlang]; }; + bayesplot = derive2 { name="bayesplot"; version="1.6.0"; sha256="0in9cq2ybpa7njrwqx4l6nc8i01cjswsvzwlyiw465pi74aapr57"; depends=[dplyr ggplot2 ggridges reshape2 rlang]; }; bayespref = derive2 { name="bayespref"; version="1.0"; sha256="0gwlzs7qkgmf90np7xv85d27jjqggyhfj00vpya664a2znyjb3jm"; depends=[coda lattice MASS MCMCpack RColorBrewer]; }; bayess = derive2 { name="bayess"; version="1.4"; sha256="0axipk5hn2hw3g4dfh7y3xa0dxqmi8kqpbr77nl14y7ydpija6xm"; depends=[combinat gplots MASS mnormt]; }; - bayou = derive2 { name="bayou"; version="2.1"; sha256="0biziarmamdpapv2p2ylvxqa4mcdvdwbay545w51yb73538bgkb8"; depends=[ape assertthat coda denstrip fitdistrplus foreach geiger MASS Matrix mnormt phytools Rcpp RcppArmadillo]; }; + bayou = derive2 { name="bayou"; version="2.1.1"; sha256="17gvb2dmviwibnlqn6p3p9pcc3705xh9r8lrm90p0yg7nhm0cn02"; depends=[ape assertthat coda denstrip fitdistrplus foreach geiger MASS Matrix mnormt phytools Rcpp RcppArmadillo]; }; baystability = derive2 { name="baystability"; version="0.1.0"; sha256="1zv4bf5a4p21w2qpr6lcsgsxb0xv15v8p33031rsypmnbs9i80dp"; depends=[dplyr ggfortify ggplot2 lme4 magrittr MASS matrixStats reshape2 rlang rstiefel scales tibble tidyr tidyverse]; }; - bazar = derive2 { name="bazar"; version="1.0.6"; sha256="12b1x218x1yh9iadv8ciyncr841s0arvj4pbn74bryhcgbvmbwqm"; depends=[kimisc]; }; + baytrends = derive2 { name="baytrends"; version="1.0.7"; sha256="1l59w79n2l04n0i12ka1cvnnqsx9412b2fgsgp4pz5hsi5nswlp8"; depends=[dataRetrieval digest gdata lubridate memoise mgcv plyr survival XML zCompositions]; }; + bazar = derive2 { name="bazar"; version="1.0.10"; sha256="1in3096bxw7v80wxkjp6i9akyv18ihzc0kldl952i9s772dcgbfs"; depends=[kimisc]; }; bbefkr = derive2 { name="bbefkr"; version="4.2"; sha256="1wjx652w3p41sq71a2zdzmb7frjxm6xvcgrc2ark2spwb0lbjjw6"; depends=[]; }; bbemkr = derive2 { name="bbemkr"; version="2.0"; sha256="015c57s8mpimm82nddnh382wlkisxgdmc2hvp7k38pcnqxc5gb5q"; depends=[MASS]; }; bbmle = derive2 { name="bbmle"; version="1.0.20"; sha256="1xzij7swrrzl5ly8l3lw6awh486zcm00251dwqws1y23fbgyh3vc"; depends=[lattice MASS numDeriv]; }; bbo = derive2 { name="bbo"; version="0.2"; sha256="19xrbla3bb3csg3gjjrpkgyr379zfwyh293bcrcd6j8rnm6g4i01"; depends=[]; }; bbw = derive2 { name="bbw"; version="0.1.3"; sha256="1z3an561qh0rfi3jhh1ghsdbg8aimqmf4hpqri2jz39in3p0gwg4"; depends=[car]; }; bc3net = derive2 { name="bc3net"; version="1.0.4"; sha256="15dghd0v1s71h77iw8b49v5h7wcda5mb4540lfyibsdipbashv2h"; depends=[c3net igraph infotheo lattice Matrix]; }; - bcROCsurface = derive2 { name="bcROCsurface"; version="1.0-2"; sha256="0v1zjbgpalr5ag97s9rxcd2z0r7qpw8yhc4lw4p4i3xkw2paf5zh"; depends=[boot nnet Rcpp RcppArmadillo rgl]; }; + bcROCsurface = derive2 { name="bcROCsurface"; version="1.0-3"; sha256="1g9l4abnpp1iq5wy3rl2jv47ql9zh6s2qrhyj06x22358lpinjnl"; depends=[boot nnet Rcpp RcppArmadillo rgl]; }; bcRep = derive2 { name="bcRep"; version="1.3.6"; sha256="1fibx11ykkkjv4sgg6zc2a0g270384z2cf68hwghnld0wi002b5z"; depends=[ape doParallel foreach gplots ineq plotrix proxy stringdist vegan]; }; + bcaboot = derive2 { name="bcaboot"; version="0.2-1"; sha256="0wf1igkb0lidz4pvh3kfccs9858m1g9650wprrvrpwsdfrcd7rc9"; depends=[]; }; + bcf = derive2 { name="bcf"; version="1.2.1"; sha256="03l4wlqz69sqkffjrlznlam2sql9zfpa6x84y7x1z66zfy6f7n79"; depends=[Rcpp RcppArmadillo]; }; bcgam = derive2 { name="bcgam"; version="1.0"; sha256="1dg2fcjw8xal77irviiz260qpar2iqkjvi2k4qfm71jyq0ir0axk"; depends=[coda igraph nimble]; }; bclust = derive2 { name="bclust"; version="1.5"; sha256="01kx02azj26b6swly53zhf3sny6c6jglkxnzylsc0pvri89x7yj2"; depends=[]; }; bcmaps = derive2 { name="bcmaps"; version="0.17.1"; sha256="12hca67n7fqplis8g954hj588zl9kj8gmph86mxhcy151qpyh927"; depends=[httr rappdirs sf]; }; - bcp = derive2 { name="bcp"; version="4.0.2"; sha256="0ixpjhyyqaz7gc2ixpask062sxhsfg8d146mm244jkqgiagydg5l"; depends=[Rcpp RcppArmadillo]; }; + bcp = derive2 { name="bcp"; version="4.0.3"; sha256="0vhs89lb2wpanqsljclpvwbjmgdsc3jicws8bzqiqh8mbs3nzpxy"; depends=[Rcpp RcppArmadillo]; }; bcpa = derive2 { name="bcpa"; version="1.1"; sha256="0rwbd39szp0ar9nli2rswhjiwil31zgl7lnwm9phd0qjv8q0ppar"; depends=[plyr Rcpp]; }; bcpmeta = derive2 { name="bcpmeta"; version="1.0"; sha256="02fw1qz9cvr7pvmcng7qg7p04wxxpmvb2s8p78f52w4bf694iqhl"; depends=[mvtnorm]; }; bcrm = derive2 { name="bcrm"; version="0.4.7"; sha256="0s0xmmphrrsqnrsnnsqh9ska6afl4jyk0s0290w6askrlqdzjgil"; depends=[ggplot2 mvtnorm]; }; bcrypt = derive2 { name="bcrypt"; version="1.1"; sha256="1wwdin8x09y8n8zrwj1ylh5ikcz0v0la4wmrsvbdr61cg336wzx4"; depends=[openssl]; }; bcv = derive2 { name="bcv"; version="1.0.1"; sha256="0yqcfariw9sw0b8cpljcr7vf5rf0cwr1wbif23icchfaxk2m42gj"; depends=[]; }; + bdDwC = derive2 { name="bdDwC"; version="0.1.15"; sha256="0yraq8a0wgz12rzi2dx0gdcz5rx99qd2pzw972wjqyq3rs41pwx0"; depends=[shiny shinyBS shinydashboard shinyFiles shinyjs]; }; bda = derive2 { name="bda"; version="10.1.9"; sha256="06ycxqjpnsywakjkjxf1czhxsbdzbpwa11m69gad5538z066d24x"; depends=[]; }; bde = derive2 { name="bde"; version="1.0.1"; sha256="1f25gmjfl58x4pns89abfk85yq5aad3bgq9yqpv505g5gxk62d3v"; depends=[ggplot2 shiny]; }; bdlp = derive2 { name="bdlp"; version="0.9-1"; sha256="1ydb5hsaj1bfdz7hcdkc74qlk608kf0xrbpw247klkxrhsh9ba2p"; depends=[DBI GenOrd MASS MultiOrd rgl RSQLite stringdist]; }; bdots = derive2 { name="bdots"; version="0.1.19"; sha256="1cj6ly62d50z6713119hadl90cxf5x30wpnpx6mssmd49zds6nxb"; depends=[doParallel doRNG foreach Matrix mvtnorm nlme]; }; bdpopt = derive2 { name="bdpopt"; version="1.0-1"; sha256="1z7mdqklw3frsdzyhvx8s8wvblwm28fr1gca2yrivqjng0r47lx4"; depends=[coda rjags]; }; bdpv = derive2 { name="bdpv"; version="1.1"; sha256="0i6wdf27243ch8pn2chqriwxjg3g72wbvzlx52mz4ahw700xjc7n"; depends=[]; }; + bdribs = derive2 { name="bdribs"; version="1.0.4"; sha256="19qakmdw3l8vfxkr4p1ydkyfs4cmq37lqzw7l5zx5rdn6zlhqwh4"; depends=[rjags]; }; bdscale = derive2 { name="bdscale"; version="2.0.0"; sha256="1hkkfd69g2bg2y4hicjs6bnw9f0zw74jy0dpadchnzw17lffpms3"; depends=[ggplot2 scales]; }; bdsmatrix = derive2 { name="bdsmatrix"; version="1.3-3"; sha256="17ddvz4gnih7rx0lr1gzk280xyh6x796cf2x794dvplpiiq83skh"; depends=[]; }; - bdvis = derive2 { name="bdvis"; version="0.2.20"; sha256="1iif70s17d9nh6bylm9s0ky70qx441n56h953gz4hxp7rb5dly31"; depends=[chron ggplot2 lattice leafletR maps plotrix plyr sqldf taxize treemap]; }; + bdvis = derive2 { name="bdvis"; version="0.2.22"; sha256="1kfkn3ak1aqqj61ryfxmq8vvmi4z4znha03ga1ncsrnpb6g1kfvk"; depends=[chron ggplot2 lattice leafletR maps plotrix plyr rgdal sqldf taxize treemap]; }; bdynsys = derive2 { name="bdynsys"; version="1.3"; sha256="07gfyp0qwq9y1cnh7lhcz7q0b1s51cjwlbpll50l2cza2dszmf29"; depends=[caTools deSolve Formula Hmisc MASS matrixStats plm pracma]; }; bea_R = derive2 { name="bea.R"; version="1.0.6"; sha256="15pdbwz7av8862bl144n998qk0w9rqwip9m2brdm5hj7id5xdlif"; depends=[chron colorspace data_table DT ggplot2 googleVis gtable htmltools htmlwidgets httpuv httr jsonlite magrittr munsell plyr Rcpp scales shiny shinydashboard stringi stringr xtable yaml]; }; beadarrayFilter = derive2 { name="beadarrayFilter"; version="1.1.0"; sha256="044dq5irc00v2f2gjz0vb69w7q7b84lppc55ganabdv4f0dxdblc"; depends=[beadarray RColorBrewer]; }; @@ -4588,48 +4785,49 @@ in with self; { bedr = derive2 { name="bedr"; version="1.0.4"; sha256="052sn90gjr34hjgyndzvcl66pv22q0kjqbx95y1pdydiwhwmhpa3"; depends=[data_table R_utils testthat VennDiagram yaml]; }; beepr = derive2 { name="beepr"; version="1.3"; sha256="061sfld23b516jws4llml0a4jsdk4z74rll4z58l2rvahkqsdrfp"; depends=[audio stringr]; }; beeswarm = derive2 { name="beeswarm"; version="0.2.3"; sha256="0hy89bwv7jixlg91li1fywa77916am2whqp1m1fx1khd45g44581"; depends=[]; }; + beezdemand = derive2 { name="beezdemand"; version="0.1.0"; sha256="1i6p36cfvz87k6llpibklmdbjb7vp1v38ijxaqkmv1jzc28sj3cl"; depends=[ggplot2 nlmrt nls2 nlstools reshape2]; }; beginr = derive2 { name="beginr"; version="0.1.3"; sha256="1wrxcgapan19p2zwvmrz9fg9hwkxfm0x2qcqkanmn0mmsaixhs3h"; depends=[cranlogs]; }; + behaviorchange = derive2 { name="behaviorchange"; version="0.0.2"; sha256="1g5r4mnqpls16836pi2dr7lm308c677m5j8xha6c12pnr39rnc4a"; depends=[data_tree DiagrammeR ggplot2 googlesheets gridExtra gtable magrittr ufs userfriendlyscience viridis]; }; behavr = derive2 { name="behavr"; version="0.3.1"; sha256="18rpln7db8cnaj6f47vjgh7q2xbcjmd0vhfbmvm82fr7qhdnnyc0"; depends=[data_table]; }; belex = derive2 { name="belex"; version="0.1.0"; sha256="1563yngc1lvncmx3h6kgsj1r6k3hvxidh6h9rb7apxs2rq5k32ms"; depends=[XML]; }; belg = derive2 { name="belg"; version="0.2.3"; sha256="1ss40fxfmzld4fqpbkc3knsxdqc4nmllgvl2v4nyqzcalcknzvvf"; depends=[Rcpp RcppArmadillo]; }; bench = derive2 { name="bench"; version="1.0.1"; sha256="0hiwm3jbwr9wjdfx0nk3djskiw1q900h4acaqjgy97p8gl0ig3g8"; depends=[glue pillar profmem rlang tibble]; }; benchden = derive2 { name="benchden"; version="1.0.5"; sha256="1cwcgcm660k8rc8cpd9sfpzz66r55b4f4hcjc0hznpml35015zla"; depends=[]; }; - benchmark = derive2 { name="benchmark"; version="0.3-6"; sha256="05rgrjhbvkdv06nzbh0v57b06vdikrqc1d29wirzficxxbjk1hih"; depends=[ggplot2 plyr proto psychotools relations reshape scales]; }; benchmarkme = derive2 { name="benchmarkme"; version="0.6.0"; sha256="0w98q4b814bz3q0vqdfnwqrgfrky3ggsyyzmdiz17kv6xk17qds8"; depends=[benchmarkmeData doParallel foreach httr Matrix]; }; benchmarkmeData = derive2 { name="benchmarkmeData"; version="0.5.1"; sha256="0vv5d90qv81lwrgi5d3zbwlwxwjqlx70xi4ljhcc0ljv50x2rvv4"; depends=[]; }; - benchr = derive2 { name="benchr"; version="0.2.0"; sha256="042ijh6726s116z7w2cky5l105p3dj7xsfmlwkigsbrmya8x5d37"; depends=[Rcpp RcppProgress]; }; + benchr = derive2 { name="benchr"; version="0.2.2"; sha256="1ls75pmhvj6d4wc9knifv6d1dfr0avfhry370m636mhfpw4z2ybf"; depends=[Rcpp RcppProgress]; }; benford_analysis = derive2 { name="benford.analysis"; version="0.1.4.1"; sha256="0acbjjavbvsaigy78b5k9qhj8011751116lqln8j0v8w1k3vqwqm"; depends=[data_table]; }; bentcableAR = derive2 { name="bentcableAR"; version="0.3.0"; sha256="1gjrlv94av9955jqhicaiqm36rrgmy0avxn9y7wbp2s1sbg7fyg7"; depends=[]; }; benthos = derive2 { name="benthos"; version="1.3-5"; sha256="1mzhqqy4dblwv70v1ky5gzrr3jyky9k4wibbp589jjjrga2vhq2a"; depends=[dplyr lazyeval readr]; }; ber = derive2 { name="ber"; version="4.0"; sha256="0gl7rms92qpa5ksn8h3ppykmxk5lzbcs13kf2sjiy0r2535n8ydi"; depends=[MASS]; }; berryFunctions = derive2 { name="berryFunctions"; version="1.17.0"; sha256="13wslhr3xm9davx3s69as41r53m3x0gm3mrnwrbsqcbmf9n0zbv3"; depends=[abind]; }; - bestNormalize = derive2 { name="bestNormalize"; version="1.2.0"; sha256="0ixv5w4x4413131fxl47c3ma0h9ac1khakp89psnci4qjxbcx5xc"; depends=[LambertW nortest]; }; + bestNormalize = derive2 { name="bestNormalize"; version="1.3.0"; sha256="0wipxc4dqhpmxqb8nkfp2pgxp7854r1rgrmppvlja7v5hwz4mgw7"; depends=[doParallel doRNG dplyr foreach LambertW nortest]; }; bestglm = derive2 { name="bestglm"; version="0.37"; sha256="0ghhi4g75mgq2pnkrvw188s65132i1d7v3hahnjrsnx4vrr8a9lz"; depends=[glmnet grpreg lattice leaps pls]; }; - betaboost = derive2 { name="betaboost"; version="1.0.0"; sha256="11r6vywkb8182r1797aijm3czrxxghv5hjbadw61ick0masvcpml"; depends=[gamboostLSS mboost]; }; + betaboost = derive2 { name="betaboost"; version="1.0.1"; sha256="1zdyzxl2kp2i5lkiz280wz4av9wqklbn25zmq6n4yb6a579yjfn8"; depends=[gamboostLSS mboost]; }; betacal = derive2 { name="betacal"; version="0.1.0"; sha256="19wgpgf9yhckl9qx9v24f4yh055wfalphcxwm7lg68px6ap2pxl9"; depends=[]; }; betafam = derive2 { name="betafam"; version="1.0"; sha256="1nf5509alqnr5qpva36f1wb7rdnc084p170h91jv89xvzsidqxca"; depends=[]; }; betalink = derive2 { name="betalink"; version="2.2.1"; sha256="1wskr8nh1jzcrnc8fn58lscphsvj5z9p1i1pnpfdjn60mdb09rkp"; depends=[igraph plyr stringr]; }; - betapart = derive2 { name="betapart"; version="1.5.0"; sha256="0hk016hpdb927d142rfa13kjwhgzki1fy4xqbwdphzwv37nyxag7"; depends=[ape geometry picante rcdd]; }; + betapart = derive2 { name="betapart"; version="1.5.1"; sha256="0j72rfvnn0ag6vxp8nw5v68n3qblyp5gd0y8z1kchs4dbq1v288g"; depends=[ape fastmatch geometry picante rcdd]; }; betaper = derive2 { name="betaper"; version="1.1-0"; sha256="1gr533iw71n2sq8gga9kzlah7k28cnlwxb2yh562gw6mh1axmidm"; depends=[ellipse vegan]; }; - betareg = derive2 { name="betareg"; version="3.1-0"; sha256="05s5lszj22186xhvk0dxgz4vqfvmss40pbh147mwqkz1h48z5pf7"; depends=[flexmix Formula lmtest modeltools sandwich]; }; + betareg = derive2 { name="betareg"; version="3.1-1"; sha256="07cblxprybqkv55805za6qg47vw95azxn4446frxwkramza4ygv2"; depends=[flexmix Formula lmtest modeltools sandwich]; }; betas = derive2 { name="betas"; version="0.1.1"; sha256="1v85r6lrk21viwzam42gi42bgbwh5ibn3dpbh3aqrf3dnn1rdsyd"; depends=[robust]; }; betategarch = derive2 { name="betategarch"; version="3.3"; sha256="0hqvyps3lwix2fkzk18wrkhxpqhgardvib9sq1ip8gn8sn1dsi8y"; depends=[zoo]; }; bethel = derive2 { name="bethel"; version="0.2"; sha256="1zlkw672k1c5px47bpa2vk3w2906vkhvifz20h6xm7s51gmm64i0"; depends=[]; }; - beyondWhittle = derive2 { name="beyondWhittle"; version="0.18.1"; sha256="0aph1sshnxk7aajnm871zw9fadxbhv8l93kbydzh69b8kiz6wi6x"; depends=[ltsa Rcpp]; }; + beyondWhittle = derive2 { name="beyondWhittle"; version="1.0"; sha256="15q3dp5aw7csr3sp12vxhjvhazryk9b67x1spp0kv7qxy1v2jl95"; depends=[ltsa MASS Rcpp]; }; bezier = derive2 { name="bezier"; version="1.1"; sha256="1bhqf1zbshkf1x8mgqp4mkgdxk9jxi51xj6i47kqkyn9gbdzch0c"; depends=[]; }; bfa = derive2 { name="bfa"; version="0.4"; sha256="08n6446xl2w8z0rsqi6v2hp9cp744frxw6vrbxg5cpybhyyfzr36"; depends=[coda Rcpp RcppArmadillo]; }; bfast = derive2 { name="bfast"; version="1.5.7"; sha256="0n75minka55rxpvs3qkj0c65ydn1gc3i8lkr2gdyn1adjkl5yn01"; depends=[forecast raster sp strucchange zoo]; }; bfp = derive2 { name="bfp"; version="0.0-39"; sha256="1g3sbmi1yl7ai8v6a2ri54jqv64wzfy580s8i1w9xwbqjcrpj77m"; depends=[Rcpp]; }; - bfw = derive2 { name="bfw"; version="0.1.0"; sha256="13hbg2kr56yfg2r58cw3l631rq1kv8bk9gcdqbgspsjn04g1iq2f"; depends=[coda MASS rJava runjags]; }; + bfw = derive2 { name="bfw"; version="0.2.0"; sha256="05h4i3mpwgdn3w1163qhzzhzrcxzsw3y35pjzj0w4kjc28nkp354"; depends=[coda MASS runjags]; }; bgeva = derive2 { name="bgeva"; version="0.3-1"; sha256="0qm4xknyab8hdyn3in2hsvm8s062cnmqqf41b5jvax1mi5hs0z8c"; depends=[magic mgcv trust]; }; bgmfiles = derive2 { name="bgmfiles"; version="0.0.6"; sha256="10qldfjjq5fx5jrrakdxc8k2pf0vp8ifg18nq56lvx9n28mqigim"; depends=[]; }; bgmm = derive2 { name="bgmm"; version="1.8.3"; sha256="09hsqjjyzlpl0fqb7832j5ydrr0yc42zb1c9q1y5hbrms7yp00p8"; depends=[car combinat lattice mvtnorm]; }; - bgsmtr = derive2 { name="bgsmtr"; version="0.1"; sha256="09h118msqf9yl2z7d6dsvgn4vrvy43ynznajj58k7gkxdlm1nimg"; depends=[coda EDISON Matrix mnormt mvtnorm sparseMVN statmod]; }; + bgsmtr = derive2 { name="bgsmtr"; version="0.2"; sha256="05d4bd350parb3nfwb2arb1z2g24l6pr81z9m5q76rhhsxp6rzn8"; depends=[coda EDISON inline LaplacesDemon Matrix matrixcalc miscTools mnormt mvtnorm Rcpp sparseMVN statmod TargetScore]; }; bhm = derive2 { name="bhm"; version="1.13"; sha256="1iq1hjc7xn2kmmxgzv6mzcvvf48kqp5b8lavmzrqykak3v4z02nz"; depends=[coda survival]; }; - bhrcr = derive2 { name="bhrcr"; version="1.0.0"; sha256="0rqn9wkd25d7l295n55idsf1zch1niz5f05qnsbd1gqrq7nw42xn"; depends=[AER Cairo MASS MCMCpack msm mvtnorm survival]; }; + bhrcr = derive2 { name="bhrcr"; version="1.0.1"; sha256="1frkzngrxy65nzdz3aylpj4kfikd1giwpwsy0bbhr5a9zbpr405v"; depends=[AER Cairo MASS MCMCpack msm mvtnorm survival]; }; biasbetareg = derive2 { name="biasbetareg"; version="1.0"; sha256="1562zdin0y5mrp36ih11ir3h9cv49cx1l98chxd89fkj8x3c1fbg"; depends=[betareg]; }; bib2df = derive2 { name="bib2df"; version="1.0.1"; sha256="1rprcnqvs4nicd26h34kpgzlpl22430dikxs2q1sjf861qachi10"; depends=[dplyr httr humaniformat stringr]; }; - bibliometrix = derive2 { name="bibliometrix"; version="1.9.4"; sha256="0l2lqz9qx8f86dz2asvv11iv366hvjn2fjamgm98winrvyrzqnsw"; depends=[factoextra FactoMineR ggplot2 ggraph ggrepel igraph Matrix RColorBrewer RISmed rscopus SnowballC stringdist stringr]; }; + bibliometrix = derive2 { name="bibliometrix"; version="2.0.1"; sha256="1j7gf3r7z622m3gyaf8mw16gspnj59ad97h9zn9wk1kmy02bmwnp"; depends=[dplyr DT factoextra FactoMineR ggplot2 ggraph ggrepel igraph Matrix networkD3 RColorBrewer RISmed rscopus shiny shinycssloaders shinythemes SnowballC stringdist stringr]; }; bibtex = derive2 { name="bibtex"; version="0.4.2"; sha256="0wl3925ryd54g1nv3ncwllc493d39dpgy5md61940h69c0van1hz"; depends=[stringr]; }; biclust = derive2 { name="biclust"; version="2.0.1"; sha256="1y5n6wfa1lx88ck3x09rcg0dh3pw89225h85hmq2la1s1fpa48i0"; depends=[additivityTests colorspace flexclust ggplot2 lattice MASS tidyr]; }; bife = derive2 { name="bife"; version="0.5"; sha256="0lzij8sazfdr687bi5lfp5ndvwlx18vyzr3svc0zv9mnv8s8vfvd"; depends=[Formula Rcpp RcppArmadillo]; }; @@ -4641,33 +4839,37 @@ in with self; { bigReg = derive2 { name="bigReg"; version="0.1.2"; sha256="1hmvh5j40zpzz6c88hmikphps8rb741yvkg60dxmkfl8gxqsrp3w"; depends=[MASS Rcpp RcppArmadillo uuid]; }; bigalgebra = derive2 { name="bigalgebra"; version="0.8.4"; sha256="19rv552ac0q9djc1yvpldkc0lipdf6q143m9dnndpsqs7ayqlr4g"; depends=[BH bigmemory]; }; biganalytics = derive2 { name="biganalytics"; version="1.1.14"; sha256="1hsqdg5hkhs6z9pwvn055q02hzpksjwrf33q5zdnkm387g188ca6"; depends=[BH biglm bigmemory foreach Rcpp]; }; - bigchess = derive2 { name="bigchess"; version="1.0.0"; sha256="14hjrma9qjyi9nypbvrqrzf6d1fxh4rrc48yq95vsrg7vr4han5x"; depends=[ff ffbase]; }; - bigdatadist = derive2 { name="bigdatadist"; version="1.0"; sha256="1xmralvhdczd270c2ym47ywc7gkqs247vpjr1vpmqsgiqvr7n1ql"; depends=[FNN MASS pdist rrcov]; }; + bigchess = derive2 { name="bigchess"; version="1.1.0"; sha256="0w6zhlljnza16xb1zsw4lan9al4pynbvk4d830yvqpd3bnb6aidk"; depends=[ff ffbase]; }; + bigdatadist = derive2 { name="bigdatadist"; version="1.1"; sha256="16gkybwcp9sxqb0iic2fhmc4gndr44ayg14wrfcjvjaj4g5r6xs2"; depends=[FNN MASS pdist rrcov]; }; biglars = derive2 { name="biglars"; version="1.0.2"; sha256="17zs25dvlja9ynx2fm5f4nmgkx4mnyqs5iscwsyahr6qigx1rz9x"; depends=[ff]; }; biglasso = derive2 { name="biglasso"; version="1.3-6"; sha256="044l2l34l4pl7ijwgq569cn8x5clj795qpfwb1b9qfwvggvgzgni"; depends=[BH bigmemory Matrix ncvreg Rcpp RcppArmadillo]; }; bigleaf = derive2 { name="bigleaf"; version="0.6.5"; sha256="0l2a4xi9jyx9sd79fvva9rqqxb4mld99k0gycn07fb81m8lkf690"; depends=[robustbase]; }; biglm = derive2 { name="biglm"; version="0.9-1"; sha256="1z7h4by457z93k5i6qf5rq7xmd1y2kcd1rq4pv465cd32d4mb2g1"; depends=[DBI]; }; - bigmatch = derive2 { name="bigmatch"; version="0.2.1"; sha256="0c2rg6fiphb01xz6lm34766gwz7m054bgismwbx6wscmw51nj7rw"; depends=[liqueueR mvnfast plyr rcbalance]; }; + biglmm = derive2 { name="biglmm"; version="0.9-1"; sha256="1f4w59jvq7lq0bh5fs41czw0yc8h56iijbj0hlcq47zyqx6gll9a"; depends=[DBI]; }; + bigmatch = derive2 { name="bigmatch"; version="0.4.1"; sha256="13sdvjik3x35csjs5cwbymgkkvsj26j7fp25xijs41sfa4kcri53"; depends=[liqueueR mvnfast plyr rcbalance]; }; bigmemory = derive2 { name="bigmemory"; version="4.5.33"; sha256="0ycl9dzm3drpyas625h34rir5bnbjlncxlvawfsfmqwcbmwdjdvj"; depends=[BH bigmemory_sri Rcpp]; }; bigmemory_sri = derive2 { name="bigmemory.sri"; version="0.1.3"; sha256="0mg14ilwdkd64q2ri9jdwnk7mp55dqim7xfifrs65sdsv1934h2m"; depends=[]; }; bigml = derive2 { name="bigml"; version="0.1.2"; sha256="0vl5krjbgckknxwl26b2hn63jhb80zbn7abpckhxzxfxzncpnfz9"; depends=[plyr RCurl RJSONIO]; }; + bigreadr = derive2 { name="bigreadr"; version="0.1.3"; sha256="1cdr7i8y7bvhfajs3bmxlljbda2922dgbiwkkyxn2k5cn384plak"; depends=[data_table fpeek Rcpp]; }; bigrquery = derive2 { name="bigrquery"; version="1.0.0"; sha256="0z7wsqxla1pg2454l35kkfaz2s9hppwvpz1pds286ddldbbmyzis"; depends=[assertthat curl DBI glue httr jsonlite prettyunits progress rapidjsonr Rcpp tibble]; }; bigsplines = derive2 { name="bigsplines"; version="1.1-1"; sha256="1kf04p2lglzdi1fdryk27nmj2a2jca2ii7ki8vak93sq21isb179"; depends=[quadprog]; }; - bigstep = derive2 { name="bigstep"; version="0.7.4"; sha256="0g45fgnamdv1v3b8xvpsj4rzhisyvbbddwyzvzvmmi4a8w20pzn5"; depends=[bigmemory matrixStats R_utils RcppEigen speedglm]; }; + bigstatsr = derive2 { name="bigstatsr"; version="0.6.2"; sha256="1dv6615yn26lpqj4nswji74zp4zjp6j5m1n0h1h3jffdh7xai46d"; depends=[BH bigreadr cowplot doParallel foreach ggplot2 Rcpp RcppArmadillo RSpectra]; }; + bigstep = derive2 { name="bigstep"; version="1.0.0"; sha256="1bkh7a4qzvh567qglkyidlfam5qj33aih9k8ndxj2ng6dcq38lbd"; depends=[bigmemory magrittr matrixStats R_utils RcppEigen speedglm]; }; bigtabulate = derive2 { name="bigtabulate"; version="1.1.5"; sha256="1jvp3m0ms2cav9z8vvhh80gsa0kvc351brv2jq99rxv1mwvpa4xj"; depends=[BH biganalytics bigmemory Rcpp]; }; bigtcr = derive2 { name="bigtcr"; version="1.1"; sha256="1l03yc28afdm7glbw4ay0zsywjgqg5l90qz1hfhslsy8gg7d5wq5"; depends=[]; }; bigtime = derive2 { name="bigtime"; version="0.1.0"; sha256="136gy2i4qwa2drklllyzp3z0dbijlavgf3sxy73bf84df2yq1c9i"; depends=[corrplot lattice MASS Rcpp RcppArmadillo RcppEigen zoo]; }; - bikedata = derive2 { name="bikedata"; version="0.2.0"; sha256="1iihf1nf3ybvkhq4j3c5p1271c56vpsmsrjf3q2r9n98g3apa6k2"; depends=[BH DBI dodgr httr lubridate magrittr Rcpp readxl reshape2 RSQLite tibble xml2]; }; + bikedata = derive2 { name="bikedata"; version="0.2.2"; sha256="02qwi0rdrg6pmimfqc9y2nkb9l9aks8zxgqz9paqyr2b2psib7ym"; depends=[BH DBI dodgr httr lubridate magrittr Rcpp readxl reshape2 RSQLite tibble xml2]; }; bikeshare14 = derive2 { name="bikeshare14"; version="0.1.0"; sha256="12399c01s8p9rmpi3fpy4rm7xxnsf627slz3h234frbahhs882c4"; depends=[]; }; bild = derive2 { name="bild"; version="1.1-5"; sha256="03has1zi57inicahl52ja006vv5cdndyxfsxp77l6nc3zc6ixna8"; depends=[]; }; billboard = derive2 { name="billboard"; version="0.1.0"; sha256="1z3y8dijhc1381y91n5zq305xzm1gpvs0g4mdpfr7zrblpa8ws39"; depends=[tibble]; }; - billboarder = derive2 { name="billboarder"; version="0.2.2"; sha256="14jq3k2d0bsc2l8hsc2shps3hw6fq0k0w5m0yj9k4hbidgpg9z7n"; depends=[ggplot2 htmlwidgets jsonlite magrittr scales]; }; + billboarder = derive2 { name="billboarder"; version="0.2.4"; sha256="0y4rcrcdi8jfp5dha4vzvr5d0rq73wlbvszb517bdwgg4cgh2hgq"; depends=[ggplot2 htmltools htmlwidgets jsonlite magrittr scales]; }; bimetallic = derive2 { name="bimetallic"; version="1.0"; sha256="181qi4dr0zc7x6wziq7jdc1his20jmprfpq3hrfm56fr5n1sj8wl"; depends=[]; }; bimixt = derive2 { name="bimixt"; version="1.0"; sha256="0nhszpzjqy8z3vngl5jdzqxzshnn92wgi0ci5n3n5kzi24xkfrzc"; depends=[pROC]; }; - binGroup = derive2 { name="binGroup"; version="2.1-1"; sha256="1rwmsrm4ghpvb1vldph2frwglfvajwyj7bzi1f6mhnm9mrg80blj"; depends=[partitions]; }; + binGroup = derive2 { name="binGroup"; version="2.2-1"; sha256="0cb7j6b0s3y56mv1967awwri0kv0rf3sr3vwf9gc2zbjggxi9ffp"; depends=[partitions Rdpack]; }; binMto = derive2 { name="binMto"; version="0.0-7"; sha256="0rg9rsdy14jx7zjv60krcz1vh0sxqimsai0wynhx2sx0kydw4ngy"; depends=[mvtnorm]; }; binaryGP = derive2 { name="binaryGP"; version="0.2"; sha256="0i4xi0gxk0lamjdygyx0azdp3kfqmva1g20nl3p65w4yx77m88d6"; depends=[GPfit lhs logitnorm nloptr Rcpp RcppArmadillo]; }; binaryLogic = derive2 { name="binaryLogic"; version="0.3.9"; sha256="19ig9qgjjnivfihjy41pc13qlrb95679mmk4zks5lbbri8qi4qxj"; depends=[]; }; + binb = derive2 { name="binb"; version="0.0.3"; sha256="14fzsaxlh0kl85gapw9xizgd201zbbcqh2hngiqap6fzha73gvc8"; depends=[knitr rmarkdown]; }; binda = derive2 { name="binda"; version="1.0.3"; sha256="15rhxnlif7agblzd09gyllkqkf5d8cc75b4vmp7grx8a6y7w47g0"; depends=[entropy]; }; bindata = derive2 { name="bindata"; version="0.9-19"; sha256="15ya21fz1kvq4qsppkn9ypiqvaq8q4vszdcgcymampa7zc07z2ld"; depends=[e1071 mvtnorm]; }; bindr = derive2 { name="bindr"; version="0.1.1"; sha256="1l05fpk2yql3jka321c0bdgx6mqq9pvfrg2844lbjfpbgjkmqy3w"; depends=[]; }; @@ -4675,9 +4877,10 @@ in with self; { binequality = derive2 { name="binequality"; version="1.0.3"; sha256="0hhcmw1mq785zylcxghfnazi3xvnl7sqpqll8fqdk064a4drqkw1"; depends=[gamlss gamlss_cens gamlss_dist ineq survival]; }; binford = derive2 { name="binford"; version="0.1.0"; sha256="04mpdvynlm4gddybys04k0446gc9hyq0vaxr6a525p76ls5aw4b1"; depends=[]; }; bingat = derive2 { name="bingat"; version="1.3"; sha256="1y68rgafipfad78yrzcygdszgy1d5q739kap06pzr78bn3i8hiwa"; depends=[doParallel foreach gplots matrixStats network vegan]; }; - binhf = derive2 { name="binhf"; version="1.0-2"; sha256="040ss4jwqar4b5wb96gpi41xhmlqcbvs4vphxmfj8xs12hd7r6wl"; depends=[adlift EbayesThresh wavethresh]; }; + binhf = derive2 { name="binhf"; version="1.0-3"; sha256="1vdw2s8zddp7gad8l3c4jpmnjcc0f5wpqbrp6gp9lgp1c3qa505y"; depends=[adlift EbayesThresh wavethresh]; }; + binman = derive2 { name="binman"; version="0.1.1"; sha256="0hm0h285p4v9lhrqjy8s22f1s1vmfpfla5iaycpj8vw3qb3632az"; depends=[assertthat httr jsonlite rappdirs semver xml2 yaml]; }; binneR = derive2 { name="binneR"; version="1.1.1"; sha256="07cfcp9jj5bks8kmxvir9y9z7fj44hvy1wyrg4jy029dvkz8g2ki"; depends=[dplyr magrittr mzR plyr tidyr]; }; - binnednp = derive2 { name="binnednp"; version="0.1.0"; sha256="0cfgz6828b2525dmph5n4zxdgkbx0nsrm4k2azhw1xfi3pz4z6ga"; depends=[fitdistrplus kedd mclust nor1mix Rcpp Rdpack]; }; + binnednp = derive2 { name="binnednp"; version="0.2.0"; sha256="1dklymwsz0l0xklmvq34mf11chd2hm91r5qa031zjf1hsm3gplh8"; depends=[fitdistrplus kedd mclust nor1mix Rcpp Rdpack]; }; binom = derive2 { name="binom"; version="1.1-1"; sha256="0mjj92dqf5q69jxzqya4izb1mly3mkydbnmlm4wb3zqqg82a324c"; depends=[]; }; binomSamSize = derive2 { name="binomSamSize"; version="0.1-5"; sha256="1an6dcqsjh5r0w4kc3n6yfvvha5qhrb2i4bpf7g5ykhl3i60zfcc"; depends=[binom]; }; binomen = derive2 { name="binomen"; version="0.1.2"; sha256="0w1m5b2qvq3g28hahfgkq7wrrjqy43x1x4kvrrrf284s5ka90531"; depends=[dplyr jsonlite lazyeval]; }; @@ -4691,7 +4894,7 @@ in with self; { bio3d = derive2 { name="bio3d"; version="2.3-4"; sha256="1zmswa9xs81lbrlkkgi8dvv9xpf0ynqjqwy1k36szvfb8ar9mczr"; depends=[Rcpp]; }; bioOED = derive2 { name="bioOED"; version="0.1.4"; sha256="1rjcqrni5xag97pxfsf40isr2c8pkqsvihf86phak8ngwl7qdgmc"; depends=[bioinactivation corrplot dplyr FME ggplot2 MEIGOR]; }; bioPN = derive2 { name="bioPN"; version="1.2.0"; sha256="0mvqgsfc7d4h6npgg728chyp5jcsf49xhnq8cgjxfzmdayr1fwr8"; depends=[]; }; - bioacoustics = derive2 { name="bioacoustics"; version="0.1.2"; sha256="0xhlmcfb7ll4w655dsq6vdjn6yl2imrw6da2xg5csk2s9yg059wq"; depends=[htmltools moments Rcpp stringr tuneR]; }; + bioacoustics = derive2 { name="bioacoustics"; version="0.1.5"; sha256="159dyqj5r5s4673nkcvv432gcc17f0qygnyjjd6mq6l7a38zb017"; depends=[htmltools moments Rcpp stringr tuneR]; }; biofiles = derive2 { name="biofiles"; version="1.0.0"; sha256="1bglgl2jcp6jy3f7xwndil56i98xx4kn518s3fqdixw7n5ibmqd2"; depends=[assertthat BiocGenerics Biostrings foreach GenomeInfoDb GenomicRanges IRanges iterators Rcpp RCurl reutils S4Vectors XVector]; }; biogas = derive2 { name="biogas"; version="1.10.3"; sha256="1qfidjwhaxg5zplzkldhj4zqg81xrcqmvh9x5km5yhyymzr6y4vs"; depends=[]; }; biogeo = derive2 { name="biogeo"; version="1.0"; sha256="14sqgg8b06gp5dajxvyj9s3ndsk7jpkfr0mkyl2l61kgp6qx53rh"; depends=[maptools raster sp stringr vegan]; }; @@ -4708,7 +4911,7 @@ in with self; { biosignalEMG = derive2 { name="biosignalEMG"; version="2.1.0"; sha256="0bbkrfqkmks4z8c7rh0k43lvm71vn3fzrw3kpj012ym77whwkvay"; depends=[signal]; }; biotic = derive2 { name="biotic"; version="0.1.2"; sha256="1p18jkdd263dgk90626n9awkj6m4zn1n7897596fzrzrahksa978"; depends=[]; }; biotools = derive2 { name="biotools"; version="3.1"; sha256="15y3ccmj1gslzc0lp0gvc66hf0yigx3zkqnw46crgrizjm2kmjay"; depends=[boot lattice MASS rpanel SpatialEpi tkrplot]; }; - bipartite = derive2 { name="bipartite"; version="2.08"; sha256="16j70ikzprjsm81w9bqbp26xxf14ckw654dy7c5hkz24x62qsx2i"; depends=[fields igraph MASS permute sna vegan]; }; + bipartite = derive2 { name="bipartite"; version="2.11"; sha256="1ahn696g881dc9mnf67pglf0kskfk2zqkj2afvinqxmwal827f72"; depends=[fields igraph MASS permute sna vegan]; }; biplotbootGUI = derive2 { name="biplotbootGUI"; version="1.1"; sha256="0k92z9iavvq5v56x2hgkmrf339xl7ns1pvpqb4ban8r1j8glzawi"; depends=[cluster dendroextras MASS rgl shapes tcltk2 tkrplot]; }; birdnik = derive2 { name="birdnik"; version="0.1.1"; sha256="17szs4yh3gmf6glwldbk9bhk6f40si2zv53zvgqmg3lbl3z09dv1"; depends=[httr]; }; birdring = derive2 { name="birdring"; version="1.3"; sha256="1vlivapmgq3kz2zz795c7hcfpibnqcfnxp7m42di37yngqc90q87"; depends=[geosphere ks lazyData raster rgdal rgeos rworldmap rworldxtra sp]; }; @@ -4722,6 +4925,8 @@ in with self; { bitops = derive2 { name="bitops"; version="1.0-6"; sha256="176nr5wpnkavn5z0yy9f7d47l37ndnn2w3gv854xav8nnybi6wwv"; depends=[]; }; bitrugs = derive2 { name="bitrugs"; version="0.1"; sha256="0sqgp05b902mdldr4ckz4knmkbsqvgl1vx0l792cn2r437yqlgp3"; depends=[]; }; bivarRIpower = derive2 { name="bivarRIpower"; version="1.2"; sha256="0vgi0476rwali6k8bkp317jawzq5pf04v75xmycpmadb7drnpzy0"; depends=[]; }; + bivariate = derive2 { name="bivariate"; version="0.2.2"; sha256="1kf34gdhi0cnngwp3xgk3qmiqxav8qldign93mxygxx8as2za00x"; depends=[KernSmooth mvtnorm]; }; + bivgeom = derive2 { name="bivgeom"; version="1.0"; sha256="1cn8k7q011whr4f7zig85dsrkz04614z9ns2ky6k6i16s5n3glxy"; depends=[bbmle copula]; }; bivrp = derive2 { name="bivrp"; version="1.1"; sha256="0ycb3ppz8j6wd8ha52wy8xw0n5a5w4f46j6gk4hy151yslr00qay"; depends=[MASS]; }; biwavelet = derive2 { name="biwavelet"; version="0.20.17"; sha256="183h9mdlpizikg1xnrnd03hbij4fnf5ibsad4jcfmh6d73qcgn9b"; depends=[fields foreach Rcpp]; }; biwt = derive2 { name="biwt"; version="1.0"; sha256="1mb3x8ky3x8j4n8d859i7byyjyfzq035i674b2dmdca6mn7paa14"; depends=[MASS rrcov]; }; @@ -4730,55 +4935,57 @@ in with self; { bkmr = derive2 { name="bkmr"; version="0.2.0"; sha256="0dk6dn73bqlvwinn3aginls4533931xcr3h59k0w60yxs3v8yakv"; depends=[dplyr fields magrittr MASS nlme tidyr tmvtnorm truncnorm]; }; blackbox = derive2 { name="blackbox"; version="1.1.25"; sha256="1xjljxvh8jg5gnfwdb6f8ifn5s30dxjlnbal97kinq0ad33lvs48"; depends=[foreach geometry lattice MASS nloptr numDeriv pbapply proxy rcdd Rcpp RcppEigen spaMM]; }; blandr = derive2 { name="blandr"; version="0.5.1"; sha256="1rqas71hlf000b3z824d8ljshf8bx91bbrzaxxnx5n3chv19w6z6"; depends=[ggplot2 jmvcore knitr R6 rmarkdown stringr]; }; - blastula = derive2 { name="blastula"; version="0.2.0"; sha256="11vaqsfm0kszx3iq38c8vbqnwkfk77lv5021l2zq9iaxz9d83s7k"; depends=[commonmark downloader dplyr ggplot2 glue htmltools httr knitr magrittr purrr rlang stringr tibble tidyr]; }; + blastula = derive2 { name="blastula"; version="0.2.1"; sha256="1w9g858c6p7qzv86pfndycvpgv6k63r85wlq11249mi2zqzvh7rl"; depends=[commonmark downloader dplyr ggplot2 glue htmltools httr magrittr stringr tidyr]; }; blavaan = derive2 { name="blavaan"; version="0.3-2"; sha256="0rbwdxajrzr43wmqjmxw2hh390inba6nj15yfwqr25ipw0l2mwl3"; depends=[coda lavaan loo MCMCpack mnormt nonnest2]; }; blendedLink = derive2 { name="blendedLink"; version="1.0"; sha256="19d1pnjag89jjvkl5a6wx531qjqp4cv5jk95md6jby27yr52r8vp"; depends=[]; }; blender = derive2 { name="blender"; version="0.1.2"; sha256="1qqkfgf7fzwcz88a43cqr8bw86qda33f18dg3rv1k77gpjqr999c"; depends=[vegan]; }; + blin = derive2 { name="blin"; version="0.0.1"; sha256="1h94azm7gli9i4v3li5c1p36p3rkcj2p5j6rqzlzf0pcqs0bsc09"; depends=[abind glmnet MASS Matrix mvtnorm]; }; blink = derive2 { name="blink"; version="0.1.0"; sha256="0gi5dk2js3mssg2blji7yddrbmsynp9nr3qhzlpkpy15i81mg2xy"; depends=[plyr RecordLinkage stringdist]; }; blkbox = derive2 { name="blkbox"; version="1.0"; sha256="14bl0b5w46gb7v8p94df5r56nj849r7jqisajagvd1irda3vkc7z"; depends=[bartMachine caret dplyr e1071 ggplot2 glmnet gtools kknn knitr magrittr nnet pamr party plyr pROC randomForest reshape reshape2 rJava rmarkdown shiny shinyjs stringr tibble tidyr xgboost]; }; - blkergm = derive2 { name="blkergm"; version="1.1"; sha256="0giknhcl14b4djn5k5v5n33b7bc3f8x6lx2h4jr25kpd89aynhq5"; depends=[ergm network statnet_common]; }; blm = derive2 { name="blm"; version="2013.2.4.4"; sha256="1w6c30cq38j4i1q4hjg12l70mhy5viw886l1lsnxyvniy113in4i"; depends=[]; }; blme = derive2 { name="blme"; version="1.0-4"; sha256="1ca2b0248k0fj3lczn9shfjplz1sl4ay4v6djldizp2ch2vwdgy2"; depends=[lme4]; }; blmeco = derive2 { name="blmeco"; version="1.1"; sha256="1hzg5dimzj1khygm9dv0y30mx1nf9vdhgicqdg1rvj7nf426h2ki"; depends=[arm lme4 MASS MuMIn]; }; blob = derive2 { name="blob"; version="1.1.1"; sha256="0lsg91hk508dd95ivig2lwg62qafwnarjw68110kx63cfk4zkjxc"; depends=[prettyunits]; }; blockTools = derive2 { name="blockTools"; version="0.6-3"; sha256="0023p0msfmp8swq4f5aff40m976np7y051x8hjizzw91hrfa4w2n"; depends=[MASS tibble]; }; - blockcluster = derive2 { name="blockcluster"; version="4.2.6"; sha256="0dskcwdh89a24j1lr829p9rrs88l13738b1gvsmsqrcrg9z955xc"; depends=[Rcpp rtkore]; }; + blockcluster = derive2 { name="blockcluster"; version="4.3.2"; sha256="15xp4navipxcr2pqxnxc47b0ifdazcsdkn5kmay883vzqj8c1nrb"; depends=[Rcpp rtkore]; }; + blockingChallenge = derive2 { name="blockingChallenge"; version="1.0"; sha256="0zj649gj4djdl0wly3gh99ayk1i1rk5dawcrrlzxxh56xqf4l19i"; depends=[]; }; blockmatrix = derive2 { name="blockmatrix"; version="1.0"; sha256="14k69ly4i8pb8z59005kaf5rpv611kk1mk96q6piyn1gz1s6sk6r"; depends=[]; }; blockmodeling = derive2 { name="blockmodeling"; version="0.3.1"; sha256="0cbx44mg5b9w1sz32wsgjprbss4mfx79sn6m42lvminf0023ds1r"; depends=[doParallel doRNG foreach Matrix]; }; blockmodels = derive2 { name="blockmodels"; version="1.1.1"; sha256="088629i4g63m8rnqmrv50dgpqbnxd1a4zl5wr3ga0pdpqhmd53wp"; depends=[digest Rcpp RcppArmadillo]; }; blockrand = derive2 { name="blockrand"; version="1.3"; sha256="1090vb26w6s7iqjcal0xbb3qb6p6j46a5w25f1wjdppd1spvh7f9"; depends=[]; }; - blocksdesign = derive2 { name="blocksdesign"; version="3.0"; sha256="17flj5glim3fa53k16p5pfl7dj12f76pgf4j6c1395xhn0qpww8i"; depends=[crossdes lme4]; }; + blocksdesign = derive2 { name="blocksdesign"; version="3.1"; sha256="1ykh0clj5fwli40cj4jvdkmvn4i4n4iba5sbasbaqdk45dlka5sf"; depends=[crossdes lme4]; }; blockseg = derive2 { name="blockseg"; version="0.5.0"; sha256="1zc6mvkdwjz7n0yj46c610gz2d3rwsjchbzdcg7k56j06vc9w4lp"; depends=[ggplot2 Matrix Rcpp RcppArmadillo reshape2 shiny]; }; - blogdown = derive2 { name="blogdown"; version="0.6"; sha256="02ahyzcapsjaanjiz1j9jx2wh8w2fa7dwbraj5w7bl7bln87cs16"; depends=[bookdown htmltools httpuv knitr rmarkdown servr xfun yaml]; }; + blogdown = derive2 { name="blogdown"; version="0.9"; sha256="1ps07zrr0zzp763hrfhqrmc927cl97v7l1r617s1lqhxwcji1fkx"; depends=[bookdown htmltools httpuv knitr rmarkdown servr xfun yaml]; }; blorr = derive2 { name="blorr"; version="0.1.0"; sha256="148x2ns7l9s7pb4ksg7h8ayn2lkr18gpfskvjasycccw1q44l8bk"; depends=[car caret checkmate cli clisymbols crayon descriptr dplyr e1071 ggplot2 glue gridExtra magrittr purrr Rcpp rlang scales shiny tibble]; }; - blsAPI = derive2 { name="blsAPI"; version="0.1.9"; sha256="1p7s799kix396fbx8ap9vy9akwpaps37awr18qbj53n9qcm74wkp"; depends=[RCurl rjson]; }; + blsAPI = derive2 { name="blsAPI"; version="0.2.1"; sha256="0p45g4qqaialh5m9bxgrvnc7nqmm0429syw0bml8h4h8vy4014a7"; depends=[httr rjson]; }; bmd = derive2 { name="bmd"; version="0.5"; sha256="0d4wxyymycb416sdn272292l70s1h2m5kv568vakx3rbvb8y6agy"; depends=[drc]; }; bmem = derive2 { name="bmem"; version="1.5"; sha256="1miiki743rraralk9dp12dsjjajj3iizcrfwmplf6xas6pl8sfk6"; depends=[Amelia lavaan MASS sem snowfall]; }; bmeta = derive2 { name="bmeta"; version="0.1.2"; sha256="19pm60xpmlanngq4nbibp0n5m98xw24b2xghz92ly31i3mkg2n68"; depends=[forestplot R2jags]; }; bmixture = derive2 { name="bmixture"; version="1.2"; sha256="1qyxjjhwd82a4y53nj9ww4c74hrp1v2p4ii71pa59n0pq9xkqj01"; depends=[BDgraph]; }; bmk = derive2 { name="bmk"; version="1.0"; sha256="1wxkrlrhmsxsiraj8nyiax9bqs834ln2swykmpf40wxspkykgfdq"; depends=[coda functional plyr]; }; - bmlm = derive2 { name="bmlm"; version="1.3.6"; sha256="0fjxz5p698izhfg14kizm04s1wslnkr8l2l19x3pz6qx8a2dcsgq"; depends=[BH ggplot2 Rcpp RcppEigen rstan StanHeaders]; }; + bmlm = derive2 { name="bmlm"; version="1.3.8"; sha256="05h69pp9m0lsm3047y1l6r2h9v55kfb4flc60l7y6hh9ahh65h52"; depends=[BH ggplot2 Rcpp RcppEigen rstan StanHeaders]; }; bmmix = derive2 { name="bmmix"; version="0.1-2"; sha256="00php2pgpnm9n0mnamchi6a3dgaa97kdz2ynivrf38s0vca7fqx8"; depends=[ggplot2 reshape2]; }; bmotif = derive2 { name="bmotif"; version="1.0.0"; sha256="1zjwlsimihszg8gg7mvvi8xmzvlsdph9x6524gb28jmd24xb4gwj"; depends=[tensor]; }; bmp = derive2 { name="bmp"; version="0.3"; sha256="0jd67r11bn98hjwgyr6gas423787xy7ji2hq7ay80blkkcj91xxx"; depends=[]; }; bmrm = derive2 { name="bmrm"; version="3.7"; sha256="1lv4bcjri95nh4yqcp9hd3ad90lcp2drh1dwfn99i3344yw196x2"; depends=[LowRankQP lpSolve matrixStats]; }; - bnclassify = derive2 { name="bnclassify"; version="0.4.0"; sha256="02xs0qn2bmkjw48w1m4d424x8wncgvh8kk1d1jx5r2mv04h32rs7"; depends=[assertthat BH entropy matrixStats Rcpp rpart]; }; - bnlearn = derive2 { name="bnlearn"; version="4.3"; sha256="11zp8vf79h5a6dyijazld199pzp1lsgk3x049ykgy0bqjx2ivfvq"; depends=[]; }; + bnclassify = derive2 { name="bnclassify"; version="0.4.1"; sha256="1mz0waxgppq0mw83ylpy028shmcbxlgli7q22i6rdwpacll2jqsy"; depends=[assertthat BH entropy matrixStats Rcpp rpart]; }; + bnlearn = derive2 { name="bnlearn"; version="4.4"; sha256="0nyp8qprp40hn6hbjx869603hdl0lpsdikrdb3jscy9pb49fz5di"; depends=[]; }; bnnSurvival = derive2 { name="bnnSurvival"; version="0.1.5"; sha256="1d9jmfx0id4lmw122zga7hb52vlfdfqn4amhzpsmhyck99rv92j4"; depends=[pec prodlim Rcpp]; }; bnormnlr = derive2 { name="bnormnlr"; version="1.0"; sha256="0l2r7vqikak47nr6spdzgjzhvmkr9dc61lfnxybmajvcyy6ymqs9"; depends=[mvtnorm numDeriv]; }; bnpmr = derive2 { name="bnpmr"; version="1.2"; sha256="0vpqhs1h2mphn9w5yngb7lxvmzrhn7mkj7ca6hykhhg48s2ra98g"; depends=[]; }; bnpsd = derive2 { name="bnpsd"; version="1.0.1"; sha256="0f9w3qcdmf6qx5k01vddmxj1vadx6d9zcgw6prpbmcf3cdy3fwg0"; depends=[]; }; bnspatial = derive2 { name="bnspatial"; version="1.0.3"; sha256="018rb5wacjk8igyc0qbp9rk3vjz3lffx81awlba8d2npiaxq6jbv"; depends=[doParallel foreach gRain gRbase raster]; }; - bnstruct = derive2 { name="bnstruct"; version="1.0.2"; sha256="0n4gn1vhka694wdzignawyaca0rx2l0wjgw09fw42bkrswfjvxy1"; depends=[bitops igraph Matrix]; }; + bnstruct = derive2 { name="bnstruct"; version="1.0.4"; sha256="0xlq5y2pa7d36pj316idh84hkbgn0c8jjp0d2x1p92zfvd8xpxnw"; depends=[bitops igraph Matrix]; }; + bnviewer = derive2 { name="bnviewer"; version="0.1.0"; sha256="1f941l5j29my8zfb3dnwwpqkf1hw92ljis8jfgaq93b4ic8g7z5p"; depends=[bnlearn igraph visNetwork]; }; boa = derive2 { name="boa"; version="1.1.8-2"; sha256="04lhqk5qfvaz1jk90glr2yi5vq7cdy0w8m6g2lnzk359l9y41zhp"; depends=[]; }; bodenmiller = derive2 { name="bodenmiller"; version="0.1"; sha256="0gqrjscgq4qgk7yl32w0965yscc1py9klr49s8q8hkzyihlwzim2"; depends=[]; }; boilerpipeR = derive2 { name="boilerpipeR"; version="1.3"; sha256="0467bjqhdmi3p02fp0r7rgm00x9ry464f2hniav990qzsw8i16q6"; depends=[rJava]; }; - bold = derive2 { name="bold"; version="0.5.0"; sha256="0gdmb3zsspcp594d32yzqhdpw4dwg7a3pfm7kgbghz368yw662gl"; depends=[crul data_table jsonlite plyr reshape stringr tibble xml2]; }; - bomrang = derive2 { name="bomrang"; version="0.2.1"; sha256="1xivym3imf9gyp88yangyh0023sycy4n8iy578msikjk487iq0w9"; depends=[curl data_table dplyr foreign hoardr httr janitor jsonlite magrittr raster readr rgdal rvest tidyr xml2]; }; + bold = derive2 { name="bold"; version="0.8.0"; sha256="16w623k83xydgj2m0qyxc2s08226nvqrlfj242ix4lb51kghxy3j"; depends=[crul data_table jsonlite plyr reshape stringr tibble xml2]; }; + bomrang = derive2 { name="bomrang"; version="0.4.0"; sha256="16rc60pzphbxmijff5rk3vp8ara9vy1bk48m55drpqqdc3sbc0g3"; depends=[curl data_table dplyr foreign hoardr httr janitor jsonlite lubridate magrittr raster readr rgdal rvest tidyr xml2]; }; bookdown = derive2 { name="bookdown"; version="0.7"; sha256="1b3fw1f41zph5yw3kynb47aijq53vhaa6mnnvxly72zamyzdf95q"; depends=[htmltools knitr rmarkdown tinytex xfun yaml]; }; - bookdownplus = derive2 { name="bookdownplus"; version="1.3.2"; sha256="0vkivgjfmqy2xfs75w8ylkpgcvca294q61jrhbpg24vnll3c281n"; depends=[bookdown knitr yaml]; }; + bookdownplus = derive2 { name="bookdownplus"; version="1.5.2"; sha256="09h45h9dry7ask3pg15c7zc9pghd8rdcp1cnaqgcrs6q6jgscld4"; depends=[bookdown]; }; boostSeq = derive2 { name="boostSeq"; version="1.0"; sha256="0sikyzhn1i6f6n7jnk1kb82j0x72rj8g5cimp2qx3fxz33i0asx6"; depends=[genetics lpSolveAPI]; }; - boostmtree = derive2 { name="boostmtree"; version="1.2.1"; sha256="0k79zfkck1plcd51sk6i8n5qh7hpnhchkqqhjn460hf0rl2mcjab"; depends=[nlme randomForestSRC]; }; + boostmtree = derive2 { name="boostmtree"; version="1.3.0"; sha256="0q1lgjvbc15m2gygnmh63m0wy2c6x25iwrh9cbn0baq598hnr7j9"; depends=[nlme randomForestSRC]; }; boostr = derive2 { name="boostr"; version="1.0.0"; sha256="123ag8m042i1dhd4i5pqayqxbkfdj4z0kq2fyhxfy92a7550gib2"; depends=[foreach iterators stringr]; }; boot = derive2 { name="boot"; version="1.3-20"; sha256="0ai1qpm0p4z07xr0dvag8sdn9jrxcwanrsk9khzmww094jvr1jxd"; depends=[]; }; bootES = derive2 { name="bootES"; version="1.2"; sha256="0hcaw1v80zspdsy4wr464lmgq33807i2f6n2dc3r7qqwa80g4zz0"; depends=[boot]; }; @@ -4787,16 +4994,17 @@ in with self; { bootSVD = derive2 { name="bootSVD"; version="0.5"; sha256="14xwbrpqj3j1xpsppgjxpn9ggsns2n1kmni9vn30vgy68zwvs2wy"; depends=[ff]; }; bootStepAIC = derive2 { name="bootStepAIC"; version="1.2-0"; sha256="0p6v4zjsaj1p6c678010fazdh40lpv0rvhczd1halj8aic98avdx"; depends=[MASS]; }; bootcluster = derive2 { name="bootcluster"; version="0.1.0"; sha256="1mx08p0csz06mq55bdg4vgnqa9khdgqrz4jnm48c24pg8rpaj98b"; depends=[cluster flexclust fpc mclust plyr sets]; }; - bootnet = derive2 { name="bootnet"; version="1.0.1"; sha256="1r5kbcycdlb8g4zs5vsrmcxl20a6x2kj47ybz6h1s83rqiylxg1b"; depends=[abind corpcor dplyr ggplot2 gtools huge igraph IsingFit IsingSampler Matrix mgm mvtnorm parcor qgraph relaimpo tidyr]; }; + bootnet = derive2 { name="bootnet"; version="1.1.0"; sha256="12r9xbsixj8bxjgn1cn0y2zvxmcllmz15cyflf7vnhn8lrphx309"; depends=[abind BDgraph corpcor dplyr ggplot2 graphicalVAR gtools huge igraph IsingFit IsingSampler Matrix mgm mvtnorm NetworkToolbox parcor pbapply psych qgraph relaimpo tidyr]; }; bootruin = derive2 { name="bootruin"; version="1.2-4"; sha256="1gbvh99snchipf13kjhymcx60s2kni23y7lv8lhzd3d402grp68h"; depends=[]; }; bootsPLS = derive2 { name="bootsPLS"; version="1.1.2"; sha256="19ikz3l0qds25hgcxvhsvqy6jyshcdvnxw6774ifl9ylngxvlfh0"; depends=[mixOmics]; }; bootspecdens = derive2 { name="bootspecdens"; version="3.0"; sha256="0hnxhfsc3ac4153lrjlxan8xi4sg1glwb5947ps6pkkyhixm0kc1"; depends=[MASS]; }; bootstrap = derive2 { name="bootstrap"; version="2017.2"; sha256="08lmsy7k8wsgv89yc904c6fidcymr1ma2ry4fl0p69p21v4iiwa4"; depends=[]; }; boottol = derive2 { name="boottol"; version="2.0"; sha256="01dps9rifzrlfm4lvi7w99phfi87b7khx940kpsr4m9s168a2dzv"; depends=[boot plyr]; }; - boral = derive2 { name="boral"; version="1.6.1"; sha256="1336nfgr5ni42pkikknlrhiqfi6avyl54ik2173vaxkgxcrlypzz"; depends=[abind coda fishMod MASS mvtnorm R2jags]; }; + bor = derive2 { name="bor"; version="0.1.0"; sha256="1r5jacmin0cq9zipxa9nmp3jnh6wsddd4wnzw2n5sggnf24ryp8g"; depends=[]; }; + boral = derive2 { name="boral"; version="1.7"; sha256="0li7jdzgq2ffhrf0nly96syp72vv3c6rbcni19kk2wgyv16mjwcm"; depends=[abind coda fishMod MASS mvtnorm R2jags]; }; bossMaps = derive2 { name="bossMaps"; version="0.1.0"; sha256="0w4ks1xicvfm8ari4fr18wjm0qj2nxdsapl6lpfjz8l1id0y78cg"; depends=[doParallel foreach ggplot2 raster rgdal rgeos scales sp tidyr]; }; boussinesq = derive2 { name="boussinesq"; version="1.0.3"; sha256="1j1jarc3j5rby1wvj1raj779c1ka5w68z7v3q8xhzjcaccrjhzxk"; depends=[]; }; - boxcoxmix = derive2 { name="boxcoxmix"; version="0.20"; sha256="1s6mkybr88dkn9mandmfrd0j7r3zrfjqgrdfywv54lasl1gcijzk"; depends=[npmlreg qicharts statmod]; }; + boxcoxmix = derive2 { name="boxcoxmix"; version="0.21"; sha256="0pav4nksh1zbic11l38jyyq8i58hfvwzkp88ra6nny3jn2axzipl"; depends=[npmlreg qicharts statmod]; }; boxoffice = derive2 { name="boxoffice"; version="1.1.0"; sha256="08b897dp5cfv6f30k2pdvh8y5n1981msnjr6lfs4dzfc1i6y2zfy"; depends=[httr rvest]; }; boxplotdbl = derive2 { name="boxplotdbl"; version="1.3.0"; sha256="1y1b45q69sxbszd83s8ch10z4i55h34ixm8q7yxr7byx3px8y65n"; depends=[]; }; boxr = derive2 { name="boxr"; version="0.3.4"; sha256="0wx3x65rk1ma8bw5h4yskr7ii95ynkm7il22l1bj34kv9f4bfyj3"; depends=[assertthat bit64 digest dplyr httpuv httr mime rio stringr]; }; @@ -4814,6 +5022,7 @@ in with self; { brainKCCA = derive2 { name="brainKCCA"; version="0.1.0"; sha256="1ag3qahlba4h4126873hg2bbi6sr729mhiw22gjgr4g4jg6lhh09"; depends=[brainR CCA elasticnet kernlab knitr misc3d oro_nifti rgl]; }; brainR = derive2 { name="brainR"; version="1.5.1"; sha256="0ih4vwy445ciyyvf8snm42vg7rzzf6vn9qkbhj0yyd8sy88mgyss"; depends=[misc3d oro_nifti rgl]; }; brainwaver = derive2 { name="brainwaver"; version="1.6"; sha256="0r79dpd9bbbn34rm29512srzj3m29qgvbryvrp1mwv8mmcsh6ij6"; depends=[waveslim]; }; + brandwatchR = derive2 { name="brandwatchR"; version="0.3.0"; sha256="10bccsaswsq06wdrxqg71amzx5rabmgfi4n074y651r2c1pyy98w"; depends=[data_table httr jsonlite]; }; brant = derive2 { name="brant"; version="0.2-0"; sha256="1hdwdrdl6ad112zd7q248am3qk19alnj647nrk9xxxgd7s6a9pnb"; depends=[MASS Matrix]; }; brazilmaps = derive2 { name="brazilmaps"; version="0.1.0"; sha256="1nvd8x4m4m3966qph6390kqwpsrv7vy4yf6pam98xxkjbl9a41nf"; depends=[dplyr ggplot2 magrittr sf sp]; }; brea = derive2 { name="brea"; version="0.2.0"; sha256="0mb043fdhxrg9gyf4g55ydjx37j20394nvd4d0fmiym98lccyi04"; depends=[]; }; @@ -4822,41 +5031,41 @@ in with self; { breakaway = derive2 { name="breakaway"; version="3.0"; sha256="0y3h7gifv279z3x77jmr97c0i3vy58m5wsr8pa2vyn26m02rbkpc"; depends=[]; }; breakfast = derive2 { name="breakfast"; version="1.0.0"; sha256="0p0svsqphd5w99pf5c5jmak1xxl8md881lapa8aps9xr73m4x6lf"; depends=[plyr]; }; breakpoint = derive2 { name="breakpoint"; version="1.2"; sha256="004vi1qr7iib8ykg6sp7xzv0bb841h4vsz2x0cyrhkdp41frglx9"; depends=[doParallel foreach ggplot2 MASS msm]; }; - breathtestcore = derive2 { name="breathtestcore"; version="0.4.1"; sha256="1wd5csdkq9i78l2d9rgp2fp2sw81n0bgi0ssfd447rw6c67x4539"; depends=[assertthat broom dplyr ggfittext ggplot2 MASS multcomp nlme purrr readr readxl signal stringr tibble tidyr xml2]; }; - breathteststan = derive2 { name="breathteststan"; version="0.4.1"; sha256="0jmc3984827v656h5zk1rkpbyk56cziandsdz689brw85m01kn1l"; depends=[BH dplyr purrr Rcpp RcppEigen rstan StanHeaders stringr tibble tidyr]; }; + breathtestcore = derive2 { name="breathtestcore"; version="0.4.5"; sha256="121s88q4gfc576gixilgahhv0dqwzwa0k5drwh344vgi033x1nhm"; depends=[assertthat broom dplyr ggfittext ggplot2 MASS multcomp nlme purrr readr readxl signal stringr tibble tidyr xml2]; }; + breathteststan = derive2 { name="breathteststan"; version="0.4.6"; sha256="0mwrr65hkk2l3mq8fdddfnxd44av426v384gn7cx1sqdd2rbi7a7"; depends=[BH dplyr purrr Rcpp RcppEigen rstan rstantools StanHeaders stringr tibble tidyr]; }; brew = derive2 { name="brew"; version="1.0-6"; sha256="1vghazbcha8gvkwwcdagjvzx6yl8zm7kgr0i9wxr4jng06d1l3fp"; depends=[]; }; brglm = derive2 { name="brglm"; version="0.6.1"; sha256="17r3az6za98v2r06aak77kypdaqssc9wxcc6m6vb20y7xm8dp1mp"; depends=[profileModel]; }; brglm2 = derive2 { name="brglm2"; version="0.1.8"; sha256="017m7nlh29p271dhvx19l6042qfs48hqs947kjmpc7ykzv5461y3"; depends=[enrichwith lpSolveAPI MASS Matrix nnet]; }; bridgedist = derive2 { name="bridgedist"; version="0.1.0"; sha256="0hqkpwpi3nv6mfhljl65zcflf4wy72ag36hdam6s7kynfj41qz6w"; depends=[]; }; bridger2 = derive2 { name="bridger2"; version="0.1.0"; sha256="0clp42nnbvd01n65azdi2ghp0mfqwsipzdl2d30q04lcvfkdpxrf"; depends=[BSDA data_table ggplot2 outliers plotly shiny shinydashboard]; }; - bridgesampling = derive2 { name="bridgesampling"; version="0.4-0"; sha256="1gv2h2wgj1ym7qpmxmj5s3q2xsz217ijwdx70qnh4ijvacsvaxwm"; depends=[Brobdingnag coda Matrix mvtnorm scales stringr]; }; + bridgesampling = derive2 { name="bridgesampling"; version="0.6-0"; sha256="1526lsqhgjh0v8jb2sb7rw9jxj2kkbidsqapqp309a2f05bsfb8p"; depends=[Brobdingnag coda Matrix mvtnorm scales stringr]; }; briskaR = derive2 { name="briskaR"; version="0.1.2"; sha256="1y9sabj7pfgyvv6s3bbvrb0xhjhwc4pcfsfx847kqdajid92qx8w"; depends=[deldir fftwtools fields MASS mvtnorm pracma raster rgdal rgeos sp]; }; brlrmr = derive2 { name="brlrmr"; version="0.1.5"; sha256="14dnmh062fw11bm236ilaqs6ss4ywajvsk3sxj0zwqk2bjf7y7vh"; depends=[boot brglm MASS profileModel Rcpp]; }; brm = derive2 { name="brm"; version="1.0"; sha256="0h4kgig28hkqv1amadznc0n9256dx613rxbn8s8si11ygx79x2dd"; depends=[]; }; - brms = derive2 { name="brms"; version="2.3.1"; sha256="134qixmk9r5bq6zmbyrhzyrrd60ihn5m7nkvblj7im9n8gh415wl"; depends=[abind backports bayesplot bridgesampling coda ggplot2 loo Matrix matrixStats mgcv nleqslv nlme Rcpp rstan rstantools shinystan]; }; - brnn = derive2 { name="brnn"; version="0.6"; sha256="0q3f3cbl89hgpav7bn54s13cysgz8fi0zm8byc9rgz0sqkjrxval"; depends=[Formula]; }; - broman = derive2 { name="broman"; version="0.67-4"; sha256="1jv1543zq74zjdrmhkcrjwxhn9bmsmmwadd9rjnn18svnrbnlq0g"; depends=[assertthat ggplot2 jsonlite RPushbullet]; }; - broom = derive2 { name="broom"; version="0.4.5"; sha256="1mrrqqw1bmjf2v88ziqwb5y86g29h0a3rsx2jpw0hrzrzb8i5kcb"; depends=[dplyr nlme plyr psych reshape2 stringr tidyr]; }; + brms = derive2 { name="brms"; version="2.6.0"; sha256="0zahc6p5k6sji172a148j8bcz8bzg7wbdzmaard4wr07dxqpinhj"; depends=[abind backports bayesplot bridgesampling coda ggplot2 loo Matrix matrixStats mgcv nleqslv nlme Rcpp rstan rstantools shinystan]; }; + brnn = derive2 { name="brnn"; version="0.7"; sha256="1bfqr21szlpn1izjwlzih9j7f34x31zrapckk184rvynbsbgg7g6"; depends=[Formula]; }; + broman = derive2 { name="broman"; version="0.68-2"; sha256="0h6lrxrcjggrkv1dnbqsancjj69072nacaaazibl1v99rawanghi"; depends=[assertthat ggplot2 jsonlite RPushbullet]; }; + broom = derive2 { name="broom"; version="0.5.0"; sha256="1r3831vq0fd5sh5841xr844sghg88z7ws91hg4jgnzbbkxfjp4ag"; depends=[backports dplyr nlme purrr reshape2 stringr tibble tidyr]; }; + broom_mixed = derive2 { name="broom.mixed"; version="0.2.3"; sha256="0f25wjhvvc5rw5sc8ya9agx9y7sm3sq67jj3z5503kdgksk2d1br"; depends=[broom coda dplyr glmmTMB nlme plyr purrr reshape2 stringr tibble tidyr TMB]; }; brotli = derive2 { name="brotli"; version="1.2"; sha256="07rgdgxh9bvn0qavpclxmkglwyl6ndqasxcs6j12if698dkn976b"; depends=[]; }; brr = derive2 { name="brr"; version="1.0.0"; sha256="050ivnqcaxiyypd1sxfpy6ianhzzmvs6c77ga40g3440cvfigkgw"; depends=[gsl hypergeo pander stringr SuppDists TeachingDemos]; }; brranching = derive2 { name="brranching"; version="0.3.0"; sha256="1mpjcp4x3gcc38irflldv0szznp7jazdn62niwvifinzhq4k7pkb"; depends=[ape crul curl phytools taxize]; }; brt = derive2 { name="brt"; version="1.3.0"; sha256="13fn2mv66fys7w0xchh69sb6jggg5c2imk1psi3mlr1902m6ss5m"; depends=[ggplot2]; }; - bs4Dash = derive2 { name="bs4Dash"; version="0.1.0"; sha256="0gqh51rpmqg359pv3lqg221rw9xixvgksv1yldp6sdvy0zxpp8dx"; depends=[shiny]; }; + bs4Dash = derive2 { name="bs4Dash"; version="0.2.0"; sha256="0s893mkhkr0zvarbyzl9k5033rjxwr42k74sx2qwjgwh0indypfb"; depends=[htmltools shiny]; }; bsam = derive2 { name="bsam"; version="1.1.2"; sha256="1m2lpqm2i4i35hzr1iylrb8skx8rsys3w542xjyqw030bs7b1rdk"; depends=[coda dplyr ggplot2 gridExtra lubridate msm mvtnorm rjags rworldxtra sp tibble]; }; bsamGP = derive2 { name="bsamGP"; version="1.2.1"; sha256="0b4a6ll11cykqq05ys1b0y9gdhbw6y60hjclz678vy5w8jia7a1m"; depends=[ggplot2 gridExtra MASS]; }; bsearchtools = derive2 { name="bsearchtools"; version="0.0.61"; sha256="11fqz8kdhqpc3jq34vgv3frzawgsl5y0s83rb2p54yb5yhd3p68w"; depends=[Rcpp]; }; bshazard = derive2 { name="bshazard"; version="1.1"; sha256="1kidypyqlilf794mksjvhja8bmnd9hdhz91ywy0mcddgc6wbar4h"; depends=[Epi survival]; }; bspec = derive2 { name="bspec"; version="1.5"; sha256="0jynvir7z4q1vrvhdn6wijdrjfrkk4544nlawabw2fnfxss91a91"; depends=[]; }; - bsplinePsd = derive2 { name="bsplinePsd"; version="0.5.0"; sha256="1ddvkn182r48fbjqkiskb94afy942bnl953n0cghza4wkbkdfprd"; depends=[Rcpp]; }; + bsplinePsd = derive2 { name="bsplinePsd"; version="0.6.0"; sha256="0f785l02hiq3f7anxqhm09f7lrqgkkqhly7f1x78cxm22hvrqyhg"; depends=[Rcpp]; }; bsplus = derive2 { name="bsplus"; version="0.1.1"; sha256="0s3407z48b7sdbkjkqcjk2j1wvs0z7chvdjzphil83l0vp3j5x0s"; depends=[glue htmltools lubridate magrittr purrr rmarkdown stringr]; }; bspmma = derive2 { name="bspmma"; version="0.1-1"; sha256="0bd6221rrbxjvabf1lqr9nl9s0qwav47gc56sxdw32pd99j9x5a9"; depends=[]; }; bssm = derive2 { name="bssm"; version="0.1.5"; sha256="07bhngqwm2qknsk9910273wgkl1f3c564ab1p90kvyi8syc64mqg"; depends=[BH coda diagis ggplot2 ramcmc Rcpp RcppArmadillo sitmo]; }; bssn = derive2 { name="bssn"; version="0.7"; sha256="1g2xhb7bqapwd5zbc4bl4h1fskd7k6gd0rz74hnydiiwxrwiihf6"; depends=[sn]; }; - bst = derive2 { name="bst"; version="0.3-14"; sha256="02rnnv3f89329kw81a1v88wjzrfjshqjijw5hp3zyydcsfa3j088"; depends=[doParallel foreach gbm rpart]; }; + bst = derive2 { name="bst"; version="0.3-15"; sha256="02378s18g0asmx00rghmqm5gb4dml530aln8r141f6wxgn9711fh"; depends=[doParallel foreach gbm rpart]; }; bsts = derive2 { name="bsts"; version="0.8.0"; sha256="06v8x2wgasbh00vvwn859y6rqp7z5ib43vvhh9qdkkrmdz4gw6sr"; depends=[BH Boom BoomSpikeSlab xts zoo]; }; btb = derive2 { name="btb"; version="0.1.30"; sha256="1f94zzpg3q6ldd436cv1wqpfbpw5f706073wk38a4dkg57dwrbgi"; depends=[BH Rcpp RcppArmadillo RcppParallel sf sp]; }; - btergm = derive2 { name="btergm"; version="1.9.1"; sha256="1bvq6v35fpfd4vhbq1c5jb4gg3iyfflbv0n89gv4hzm80xx50rs9"; depends=[boot coda ergm ggplot2 igraph Matrix network ROCR RSiena sna speedglm statnet statnet_common texreg xergm_common]; }; - btf = derive2 { name="btf"; version="1.2"; sha256="110p7rk43g48yrnr6c9xkyzsh3kqdywsvi23dav89hl7sxahrf75"; depends=[coda Matrix Rcpp RcppEigen]; }; + btergm = derive2 { name="btergm"; version="1.9.3"; sha256="0nailhw4n9rqqv1i2l41qz4gx0mr7viycdmd4kc00gm3nk4721gp"; depends=[boot coda ergm ggplot2 igraph Matrix network ROCR RSiena sna speedglm texreg xergm_common]; }; bucky = derive2 { name="bucky"; version="1.0.4"; sha256="1irzv1ib40h0ijlpawp0lac572nik3x77xcdi1vyncvinc9pcmr8"; depends=[lmtest sandwich]; }; bujar = derive2 { name="bujar"; version="0.2-3"; sha256="0gc5wrnhark1gawl4qqjh179xaxjal5r7qq4ilx30yn3qhzrqdaz"; depends=[bst earth elasticnet gbm mboost mda modeltools mpath rms]; }; bulletr = derive2 { name="bulletr"; version="0.1"; sha256="181rnrp62almf08gr41qnrnq8qnbqraqdvj4zixdh8fachsq2imp"; depends=[dplyr ggplot2 plotly plyr reshape2 robustbase smoother xml2 zoo]; }; @@ -4866,26 +5075,26 @@ in with self; { bupaR = derive2 { name="bupaR"; version="0.4.1"; sha256="0gf9qzk826zq15w8fl9skg1kpmz0s87k5l1rs45ggdwg49q5pq48"; depends=[data_table dplyr eventdataR forcats glue magrittr miniUI purrr rlang shiny tidyr]; }; burnr = derive2 { name="burnr"; version="0.2.2"; sha256="1b5ys0jm2dmiz1jd5f3907dhv44wh60kmfdfhj3fzx8rk7zllm06"; depends=[ggplot2 MASS plyr reshape2]; }; bursts = derive2 { name="bursts"; version="1.0-1"; sha256="172g09d1vmwl83xs6gr4gfblqmx3apvblpzdr5d7fcw1ybsx0kj6"; depends=[]; }; - bustt = derive2 { name="bustt"; version="0.1.0"; sha256="16y1si8bk7ar6h82bb8l3xq8k2azlxdz4aa56kh33nrajvbfc1fg"; depends=[dplyr lubridate rlang tibble tidyr]; }; bvarsv = derive2 { name="bvarsv"; version="1.1"; sha256="1bv4fbbi8bn7sqqpjlf8w5jpgydjr15wv5v9940wc42yk792yjrx"; depends=[Rcpp RcppArmadillo]; }; bvenn = derive2 { name="bvenn"; version="0.1"; sha256="1xrya49w5bd2b7plfxpqla60b2828rkm0rjmc4qnqzvrahsbal0y"; depends=[]; }; bvls = derive2 { name="bvls"; version="1.4"; sha256="18aaf7kk5mks3a59wwqhm1ckpn6s704l9m5nzy0x5iw0s98ijbm2"; depends=[]; }; bvpSolve = derive2 { name="bvpSolve"; version="1.3.3"; sha256="1q5sh3kj1c07zq7mx8sh4ggp1fvwh86394qrc3ildj4wrbakmzib"; depends=[deSolve rootSolve]; }; - bw = derive2 { name="bw"; version="1.0.0"; sha256="169mqd0vj0ia0zrfnv3g5gm9vzpj5mrxrwhfv5kh5a720inlcwj1"; depends=[ggplot2 gridExtra Rcpp reshape2 survey]; }; bytescircle = derive2 { name="bytescircle"; version="1.1"; sha256="0c83d37kijcvr00pc4qqdci14cpbg6988izyjfjk1yliavyc6mwf"; depends=[]; }; c060 = derive2 { name="c060"; version="0.2-4"; sha256="1yzy0p6041rygqfwzb8dpyc7jq12javmhlvdcmmc7p59bbk7wv3j"; depends=[glmnet lattice mlegp penalizedSVM peperr survival tgp]; }; - c212 = derive2 { name="c212"; version="0.93"; sha256="10gwkr2w05bi27zwvspm3g31a1dpqbh1i52vyrfaamqkxypa11nh"; depends=[coda]; }; + c14bazAAR = derive2 { name="c14bazAAR"; version="1.0.2"; sha256="03siiadhj8wp80jhm99lw7xb1p24yk9ycx2kp085a7xj82hl22jj"; depends=[crayon data_table dplyr magrittr pbapply RCurl rlang tibble tidyr]; }; + c212 = derive2 { name="c212"; version="0.94"; sha256="04vd0yzilzq078s8498085bryhhi0h19v0xykd1pzn680flm5lx8"; depends=[coda]; }; c2c = derive2 { name="c2c"; version="0.1.0"; sha256="149np512wjnlr9glmqxpiamf6c31v0bh6ym95jpdhk0iw3ic9kvh"; depends=[]; }; c3 = derive2 { name="c3"; version="0.2.0"; sha256="1af4lrgck1bff8jjp9vwyw2rpq54d1ng13rpcqlf58asdja29s9h"; depends=[data_table dplyr htmlwidgets jsonlite lazyeval viridis]; }; c3net = derive2 { name="c3net"; version="1.1.1"; sha256="0m4nvrs41kmlakc6m203zlncqwgj94wns8kzcb31xngjcacmcq42"; depends=[igraph]; }; - cAIC4 = derive2 { name="cAIC4"; version="0.4"; sha256="1lv2nawrjmb89nvp308irmbnagzjxp78l6csmql6nkwcbyhwf9rh"; depends=[lme4 Matrix]; }; + cAIC4 = derive2 { name="cAIC4"; version="0.5"; sha256="1xbij45ds0f64nj8y50dpsxvngxm004bcbs31zwicqlhf3mabf8y"; depends=[lme4 Matrix]; }; cIRT = derive2 { name="cIRT"; version="1.2.1"; sha256="1i43pqlyzykyd1a6abg1yi7ai9ay7d2jkvnw1sa4c6q07jk56d89"; depends=[Rcpp RcppArmadillo]; }; - cOde = derive2 { name="cOde"; version="0.3"; sha256="1r49q7qansn86wrxbhxqnn1dccd9av4lh4h5pn9kk42pls9q60nf"; depends=[Rcpp RcppArmadillo]; }; - cRegulome = derive2 { name="cRegulome"; version="0.1.1"; sha256="0rhi4f1wkl03vh9m6hsba08cfvqjfn99xyxsykv625bgxra817bd"; depends=[AnnotationDbi clusterProfiler DBI dplyr ggplot2 ggridges httr magrittr org_Hs_eg_db purrr R_utils reshape2 RSQLite tidyr UpSetR VennDiagram]; }; - ca = derive2 { name="ca"; version="0.70"; sha256="0730c7nk49hz0k1i5nnhq2j3wbhrlhr1qvb50mk8vmqkbhb1pz1l"; depends=[]; }; + cOde = derive2 { name="cOde"; version="0.4.1"; sha256="1hvanmbnmkrly2s3c57r2xc0w56a4jxspc15ncfzdx94k6mvnhxq"; depends=[Rcpp RcppArmadillo]; }; + cRegulome = derive2 { name="cRegulome"; version="0.2.0"; sha256="1i5f5c2mc66gjh5dh883x9ghpnam6zva8s6y5vdy6wyih0x2r9yn"; depends=[DBI ggplot2 ggridges httr igraph R_utils RSQLite UpSetR VennDiagram]; }; + ca = derive2 { name="ca"; version="0.71"; sha256="1ywqvj0rc9ss7yim4x09yf6l80xz4y6ggl56m0c1hc9x6wxna7h2"; depends=[]; }; + caMST = derive2 { name="caMST"; version="0.1.0"; sha256="1xb8ka2r729sqwxhxh5qj4girh0va0faqjv1jsyn3hlbijcz78jj"; depends=[catR mstR]; }; caRamel = derive2 { name="caRamel"; version="1.0"; sha256="0al4yk77a4bh8rjdpl841bnnjvs0sjyxqswqwik1n6y0bfr8f7pl"; depends=[geometry]; }; caRpools = derive2 { name="caRpools"; version="0.83"; sha256="10m7fw1zfr9i6v2qg235diwf3fmfr88incxnqpvnhmqcn082mxrp"; depends=[biomaRt DESeq2 rmarkdown scatterplot3d seqinr sm VennDiagram xlsx]; }; - caTools = derive2 { name="caTools"; version="1.17.1"; sha256="1x4szsn2qmbzpyjfdaiz2q7jwhap2gky9wq0riah74q0pzz76ank"; depends=[bitops]; }; + caTools = derive2 { name="caTools"; version="1.17.1.1"; sha256="01hccp05gz25vhz9nnxv1c91lrxlr7drcw9xf124gggifxf2qgnm"; depends=[bitops]; }; cabootcrs = derive2 { name="cabootcrs"; version="1.0"; sha256="0a6y04jq837k1pk8b9nhgz7rima7s8jid6vdjyfvrqshgaiabg1q"; depends=[]; }; cacIRT = derive2 { name="cacIRT"; version="1.4"; sha256="145j6isqa8yj2nvlqkxagd076zs10ng3n44khi5p4jj77fjc8gh6"; depends=[]; }; caesar = derive2 { name="caesar"; version="0.1.0"; sha256="1l0z64fsifx37j2h61kzygbwr3z3cncn48znrpb5cq10ma42igqf"; depends=[binhf]; }; @@ -4894,28 +5103,32 @@ in with self; { calACS = derive2 { name="calACS"; version="2.2.2"; sha256="0a53k2rzyjksb0ypr5zrask4a6mgiyrqx0l2z3lm218y8pk2jf1w"; depends=[]; }; calibrar = derive2 { name="calibrar"; version="0.2.0"; sha256="1544bc5rhhc6d1mky7ngza00wwh63q07dkbzlwfgyavly8m9cplb"; depends=[cmaes foreach optimx]; }; calibrate = derive2 { name="calibrate"; version="1.7.2"; sha256="010nb1nb9y7zhw2k6d2i2drwy5brp7b83mjj2w7i3wjp9xb6l1kq"; depends=[MASS]; }; + calibrateBinary = derive2 { name="calibrateBinary"; version="0.1"; sha256="1k6sl4bg05piyczpk6wsva914gcmy8viyz4423gx9i6ddflb7xdb"; depends=[gelnet GPfit kernlab randtoolbox]; }; calibrator = derive2 { name="calibrator"; version="1.2-6"; sha256="1arprrqmczbhc1gl85fh37cwpcky8vvqdh6zfza3hy21pn21i4kh"; depends=[cubature emulator]; }; - callr = derive2 { name="callr"; version="2.0.4"; sha256="1053qqq632z94pqq2v5dynjpgyv1b1c8zvidmcllw7zn8zha8gqf"; depends=[processx R6]; }; + callr = derive2 { name="callr"; version="3.0.0"; sha256="1rxbxy6kn7dj90z9hpppr9cnpvnxzknba2dwrdp0lrk5dh462qz3"; depends=[base64enc processx R6]; }; calmate = derive2 { name="calmate"; version="0.12.1"; sha256="07sjbq7bcrhal52pdzsb5pfmk6a8a44wg8xn79sv4y5v74c5xaqz"; depends=[aroma_core MASS matrixStats R_filesets R_methodsS3 R_oo R_utils]; }; + calpassapi = derive2 { name="calpassapi"; version="0.0.2"; sha256="0i81ffdfw3m15cfbag3l9s245dyhapqhy7adb3228vam3qp3n59b"; depends=[digest dplyr httr jsonlite stringr]; }; camsRad = derive2 { name="camsRad"; version="0.3.0"; sha256="06gar6qan1ka01ngjvbpcv649yvfga697mplwn1x6qnfr4ngb7cs"; depends=[httr xml2]; }; - camtrapR = derive2 { name="camtrapR"; version="0.99.9"; sha256="1kzy90mwmpn2yb47xp5b8s3lj8lbkg8hfw44pwfb54gqf7wi2lkm"; depends=[overlap rgdal ritis secr sp taxize]; }; + camtrapR = derive2 { name="camtrapR"; version="1.0"; sha256="1raxxki2xkmb7mjlfsxn2fr1dvwc86n88cbkk08bwjzsizrvsz0z"; depends=[overlap rgdal ritis secr sp taxize]; }; cancensus = derive2 { name="cancensus"; version="0.1.7"; sha256="0v3wbmdqg36zn30kgj5xbndz69x3vvr0i6ag57gz8sbbgc4nyqbr"; depends=[digest dplyr httr jsonlite rlang]; }; cancerGI = derive2 { name="cancerGI"; version="1.0.0"; sha256="1chkcyf9m98gbn6b3vmb1baw7kii4g5vxvg2xfi7i6wwdn8sqr65"; depends=[igraph qvalue reshape2 survival systemfit]; }; cancerTiming = derive2 { name="cancerTiming"; version="3.1.8"; sha256="1sfi8q2f5ag7iak0sf9pmqncb89w3gnxdiwjwpivkwhr28ais4mq"; depends=[gplots LearnBayes]; }; candisc = derive2 { name="candisc"; version="0.8-0"; sha256="0hq5bwvq791rhff2c29xdjbbkcyydii1lbsy05c1fapyn88ir0mi"; depends=[car heplots]; }; canprot = derive2 { name="canprot"; version="0.1.1"; sha256="14g7wl4p9bgwf5jm48mp676z0pwlsd2xgxjwzixri7mxxh0ivfh1"; depends=[CHNOSZ xtable]; }; - canvasXpress = derive2 { name="canvasXpress"; version="1.19.0"; sha256="1cxfadvrm3gkrdfibwi1b7kqlc3hczyc0g72v5gkgc9hssb8j46i"; depends=[htmlwidgets]; }; + canvasXpress = derive2 { name="canvasXpress"; version="1.20.5"; sha256="00hf905ypaclxhf11fkg5kdfllq9ljdziw8xbyj9lw7kq3xn5h22"; depends=[htmlwidgets]; }; + cap = derive2 { name="cap"; version="1.0"; sha256="1pv8hskxjbp589dn7rx80yaa1ld76x1w37bss2fyrys1p3qr78aa"; depends=[MASS multigroup]; }; cape = derive2 { name="cape"; version="2.0.2"; sha256="0ngm9scd3f2zcy7gy0lqk05cgbfrhhcss3mj5g6bj0byhgwd7msn"; depends=[corpcor doParallel evd fdrtool foreach HardyWeinberg igraph Matrix qpcR RColorBrewer regress shape]; }; caper = derive2 { name="caper"; version="1.0.1"; sha256="0md0sngj7wsv2d4d7fmyyz9qqismk3ps9l3qk1blqz1yi19pq124"; depends=[ape MASS mvtnorm]; }; - capm = derive2 { name="capm"; version="0.11.0"; sha256="1yw7h1r5m4md8yv0fn1j4wxvhwybifqyvrn8ip3fl32kxbwsmnvz"; depends=[deSolve FME ggplot2 maptools reshape2 rgdal shiny sp survey]; }; + capm = derive2 { name="capm"; version="0.13.5"; sha256="01jl1xqlycy726jbkkq39n3j8yia7i5x2lmkg285c4zlp350vnbg"; depends=[circlize deSolve dplyr FME ggplot2 magrittr sf survey tidyr]; }; capn = derive2 { name="capn"; version="1.0.0"; sha256="14vfk00xyx0az3whmxjpcv1785lf0gx81w7qc54i3wcfp3i22kcr"; depends=[]; }; captioner = derive2 { name="captioner"; version="2.2.3"; sha256="0xg72pmgm84f0v45phfwxpsslhf12nhn1swmrj1yifj7g9sjvybj"; depends=[]; }; captr = derive2 { name="captr"; version="0.3.0"; sha256="13j2nq9hm37g4h5fjdpz7kix0sqajdd7zssjfgil06ixfmnsijkx"; depends=[curl jsonlite]; }; capushe = derive2 { name="capushe"; version="1.1.1"; sha256="1aa76ir1kp67hiz7dr60azyc71yzslshyc640fjh0fpw0sp5kwbc"; depends=[MASS]; }; capwire = derive2 { name="capwire"; version="1.1.4"; sha256="18a3dnbgr55yjdk6pd7agmb48lsiqjpd7fm64dr1si6rpgpl4i9c"; depends=[]; }; - car = derive2 { name="car"; version="3.0-0"; sha256="1ks2jaav8lbxhzw56vpbnysjk3pvpmqh6avd574k0bha1226k81h"; depends=[abind carData lme4 maptools MASS mgcv nlme nnet pbkrtest quantreg rio]; }; - carData = derive2 { name="carData"; version="3.0-1"; sha256="193pdwgw6gk19v7swk1kwphg3vqdmpsgi555g9nyz93sa39j7r8j"; depends=[]; }; + car = derive2 { name="car"; version="3.0-2"; sha256="0l3wyc9ia0ypcbap2p39slazfpbl84mjzydqvpsywrzdiyxajnfz"; depends=[abind carData lme4 maptools MASS mgcv nlme nnet pbkrtest quantreg rio]; }; + carData = derive2 { name="carData"; version="3.0-2"; sha256="152lfgaspgx6x2wzdb5p3zv6r87a0d2pg10h6fjmdr613kzlwp1v"; depends=[]; }; carSurv = derive2 { name="carSurv"; version="1.0.0"; sha256="0wv7lp10i4sdfqyizg77ghblp3pcp7wzhs946sm0wl6w00krav9j"; depends=[corpcor fdrtool mboost Rcpp survival]; }; + carbonate = derive2 { name="carbonate"; version="0.1.0"; sha256="0p1l84vmcn1jiwnw6s9ysbbag2zxb2qiwx2kb4ghkxrhycid1p9n"; depends=[clipr httr magick R6 RSelenium rtweet wdman yaml]; }; carcass = derive2 { name="carcass"; version="1.6"; sha256="0nhp35nxjqqmy15rf9vc0qyymy7d0v8mc84570b9nc62g5xac8xy"; depends=[arm expm lme4 MASS survival]; }; cardidates = derive2 { name="cardidates"; version="0.4.8"; sha256="1mfd5sgzswhs9rln2bgxx8c54z69xp8l5dfmx7jfh8jl43qkzpjf"; depends=[boot lattice pastecs]; }; cardioModel = derive2 { name="cardioModel"; version="1.4"; sha256="1a2nvn4a4zc89pb01m20pxqgbj0ypzzvx9w2vfzwly1kzkhvc9hr"; depends=[lubridate nlme]; }; @@ -4927,16 +5140,18 @@ in with self; { caribou = derive2 { name="caribou"; version="1.1"; sha256="0ibl3jhvsgjfcva0113z0di9n5n30bs90yz0scckfv1c0pjhn4xd"; depends=[]; }; caroline = derive2 { name="caroline"; version="0.7.6"; sha256="1afxxbrd7w628l4pxdmvwbs7mbgxlhnfq3nxk2s93w47gn7r9fp7"; depends=[]; }; carpenter = derive2 { name="carpenter"; version="0.2.1"; sha256="1f6g85qgd53wzha8kfq8x29lb5wilgxm6bj49znzd1qj03nlnpna"; depends=[dplyr lazyeval magrittr pander tidyr]; }; + carrier = derive2 { name="carrier"; version="0.1.0"; sha256="0bqnwnnjqjk9q0lxq6kkz9s75ss10lfyyywyyi24m8wppxpw1vqc"; depends=[pryr rlang]; }; cartogram = derive2 { name="cartogram"; version="0.1.0"; sha256="01ixcn6fy38r6nazch9dqlg19znssrx4d4fahvx9z7f4clnh0k80"; depends=[packcircles rgeos sf sp]; }; - cartography = derive2 { name="cartography"; version="2.1.1"; sha256="0dd1qps1iw9cbipy1wamyb1f2ia9bcwdb1v7jaa58ac2x1y4m9gr"; depends=[classInt raster Rcpp rgeos rosm sf sp]; }; + cartography = derive2 { name="cartography"; version="2.1.2"; sha256="0rh97byxrmnd8wkq190zjql41zkvhzmhjg1s0nscrwjassmp4sqp"; depends=[classInt raster Rcpp rgeos rosm sf sp]; }; + cartools = derive2 { name="cartools"; version="0.1.0"; sha256="0gc5502373f0c2m2rh6awvyfqrg1wx1f341dm2byk9znba887lgs"; depends=[animation devtools dplyr gapminder ggplot2 knitr rlist rmarkdown roxygen2 sde shiny tidyverse usethis]; }; carx = derive2 { name="carx"; version="0.7.1"; sha256="1qyqsj6pfzzqyaj6076zvgcimhl4cll6sxfb6aigm02rwfkq5gvh"; depends=[matrixStats mvtnorm nlme tmvtnorm xts zoo]; }; caschrono = derive2 { name="caschrono"; version="2.0"; sha256="091zqin2cr9p50zmifrb52dxy10zflm7f0lr9nissy589qjdd0gk"; depends=[Hmisc zoo]; }; caseMatch = derive2 { name="caseMatch"; version="1.0.7"; sha256="1xd7mlnknjrilxcp0w0b36aaiql6jdqgyin1823r2x8vl9r4aqns"; depends=[]; }; casebase = derive2 { name="casebase"; version="0.1.0"; sha256="0216qzyxv44cl9f806lal9lx4n0zzr9csx8ggyjva04h5iiqrq6w"; depends=[data_table ggplot2 survival VGAM]; }; - castor = derive2 { name="castor"; version="1.3.3"; sha256="0n7d4225g28c3i4w4n9bdd8zz91kr80vvnajpn5433db71bqrrv8"; depends=[naturalsort Rcpp]; }; + castor = derive2 { name="castor"; version="1.3.4"; sha256="0ghbxh9n8189wzif5v941iax775yq0n7rkhw98wx3wklwn75ijv4"; depends=[naturalsort Rcpp]; }; cat = derive2 { name="cat"; version="0.0-6.5"; sha256="1gv7chqp6kccipkrxjwhsa7yizizsmk4pj8672rgjmpfcc64pqfm"; depends=[]; }; catIrt = derive2 { name="catIrt"; version="0.5-0"; sha256="09010z1q96nbnpys6mybspaqy57lvgd2cvwgnfijzgx3kl87pwnl"; depends=[numDeriv]; }; - catR = derive2 { name="catR"; version="3.15"; sha256="1c258x8s1j4z0p1kdg7kr4ligir8q2xdcxmk2cqshxfi0p0irajz"; depends=[]; }; + catR = derive2 { name="catR"; version="3.16"; sha256="1w39dxfzqk065v64qzmfamx8p1njsv13a461s6clagbqmhysmzbx"; depends=[]; }; catSurv = derive2 { name="catSurv"; version="1.0.3"; sha256="1qjmjdmc81inim5kpwh4k2r3cffmkyp2wpcqqzv731hciqrad8a8"; depends=[BH ltm Rcpp RcppArmadillo RcppGSL RcppParallel]; }; catch = derive2 { name="catch"; version="1.0"; sha256="16gdjrmlsnpyc38fihggj6c7wpgpmf4phcwrimnncdhwlk038yn8"; depends=[MASS Matrix tensr]; }; catcont = derive2 { name="catcont"; version="0.5.0"; sha256="0ix6ipm3nn9aq5vxirjga2kwwfnxn4v8ggfjlg5v9027v2r8rb96"; depends=[dplyr]; }; @@ -4945,7 +5160,7 @@ in with self; { cate = derive2 { name="cate"; version="1.0.4"; sha256="0qck6675xm5xbw440m1b6n38wjwk7izx3s0zpxbmhc9wh12c5prk"; depends=[corpcor esaBcv leapp MASS ruv sva]; }; catenary = derive2 { name="catenary"; version="1.1.2"; sha256="1n64kq3lkaf00a2mghs67hnxvi4dp6g12pwifyx0bd418wkw9wf3"; depends=[boot broom dplyr ggplot2 tidyverse]; }; cati = derive2 { name="cati"; version="0.99.2"; sha256="1h8x73sfjdz45zpcrv80nq8l9i1gldw0vmdgn2lhqrjaxz4zn01l"; depends=[ade4 ape e1071 FD geometry hypervolume nlme rasterVis vegan]; }; - catlearn = derive2 { name="catlearn"; version="0.5"; sha256="12sl1jlnn8669via3fbslbqs3f34andwsizkllpiw0b6k9z2yid6"; depends=[doParallel foreach Rcpp]; }; + catlearn = derive2 { name="catlearn"; version="0.6"; sha256="1dh6svlnvxq1a8sv72wdwsgzd72kgaqgjbbbm3nw5qpycy5lqr8x"; depends=[doParallel dplyr foreach Rcpp tidyr]; }; catmap = derive2 { name="catmap"; version="1.6.4"; sha256="18449qh10jxfi8p49gmbnib5y013nfdgdblbs4n0mfs0nnzb10sx"; depends=[forestplot metafor]; }; catnet = derive2 { name="catnet"; version="1.15.3"; sha256="1dgqrn1lz57pwb5pca0mlvcmw9piy9xgf6fs0y2lsy4qxa9k0plk"; depends=[]; }; catspec = derive2 { name="catspec"; version="0.97"; sha256="1crry0vg2ijahkq9msbkqknljx6vnx2m88bmy34p9vb170g9dbs1"; depends=[]; }; @@ -4954,7 +5169,7 @@ in with self; { causaldrf = derive2 { name="causaldrf"; version="0.3"; sha256="16gqx8b8alwm8a4lm69qamnqr3bg2qbz0d6q4lyqyrwsk12grid6"; depends=[mgcv survey]; }; causaleffect = derive2 { name="causaleffect"; version="1.3.8"; sha256="1z7dnfq469wa263xcxfixrn5q4vcd6xl62lahnc5gc8wzvxnxz8g"; depends=[ggm igraph XML]; }; causalsens = derive2 { name="causalsens"; version="0.1.2"; sha256="1xy8nybflbw6hymc15mmz27ic6hcq89wryb8q6d4zi216lwv2nww"; depends=[]; }; - causalweight = derive2 { name="causalweight"; version="0.1.0"; sha256="1hig92w18vsyfpv1kvgymk37ik7rw7ql80p886b3s6vwdz8z0r3j"; depends=[mvtnorm np]; }; + causalweight = derive2 { name="causalweight"; version="0.1.1"; sha256="0np9dzl5nq4rkxy8br1pvgkl5sxmihwgjxn0b1gn5cisiv6q2106"; depends=[mvtnorm np]; }; cba = derive2 { name="cba"; version="0.2-19"; sha256="0nyssc7j5rkv1gcgx4cg31hwc37wd5k3yn9s2k22ffxlnrknss2l"; depends=[proxy]; }; cbanalysis = derive2 { name="cbanalysis"; version="0.2.0"; sha256="0h0h8krlb6rckjpcw0jbbr8pcy3jm0cszimbm56l0ca668kiix06"; depends=[]; }; cbar = derive2 { name="cbar"; version="0.1.3"; sha256="1jy52qnpjvszdd8xviv3vr00ds6bah73q0mhd4kixf68jafnxd35"; depends=[Boom bsts dplyr ggplot2 magrittr]; }; @@ -4970,13 +5185,13 @@ in with self; { cccrm = derive2 { name="cccrm"; version="1.2.1"; sha256="180hzxm4z91hh008lysq1f0zky7qngg5z1laa1c119g4rqqcdskl"; depends=[gdata nlme]; }; ccda = derive2 { name="ccda"; version="1.1"; sha256="0ya9x1b41l0pjyyfdswjyip0c2v8z7gncbj7cdz0486ad75229x7"; depends=[MASS]; }; ccdrAlgorithm = derive2 { name="ccdrAlgorithm"; version="0.0.5"; sha256="171k70p4qyasr385ma3cvcga2b4nbz2dfry78wqx5yb1aa6wwcyc"; depends=[Rcpp sparsebnUtils]; }; - ccfa = derive2 { name="ccfa"; version="1.0.0"; sha256="0hhrcckiig1qfj7qb04jdmm7bwk9a17y6fn7ldxbmmw8546ad7md"; depends=[BMisc formula_tools ggplot2 pbapply quantreg TempleMetrics tidyr]; }; + ccfa = derive2 { name="ccfa"; version="1.1.0"; sha256="1paxk1jkkl8yy71h8zqw7kmhy5yz93sp7z9mpnckwyxmsbs58ps8"; depends=[BMisc doParallel foreach formula_tools ggplot2 pbapply quantreg TempleMetrics tidyr]; }; ccgarch = derive2 { name="ccgarch"; version="0.2.3"; sha256="0angffla3sk9i86v6bbsav95fp3mz5yvq7qfv0fx2v0nd2cx116w"; depends=[]; }; cchs = derive2 { name="cchs"; version="0.4.0"; sha256="1dahiyn3rj65w56hmhqdxvxh7vkjy5rxlkp1l59aq5iba21ldsyj"; depends=[survival]; }; cclust = derive2 { name="cclust"; version="0.6-21"; sha256="1n5hh0017bcq8ck52qq89jm9zgdfpmiksrypsnv2vvhk3nr0s91c"; depends=[]; }; ccmm = derive2 { name="ccmm"; version="1.0"; sha256="0855nr74xxpy7in2vrw15g8pv7nm1374irc1c5hikr5hadk5pf8v"; depends=[MASS]; }; cctools = derive2 { name="cctools"; version="0.1.1"; sha256="1baqijxg75wr90y38d5g1gg8jmpz8ji7zv51wp9n1knif27rg348"; depends=[qrng Rcpp RcppArmadillo]; }; - cdata = derive2 { name="cdata"; version="0.7.1"; sha256="0hijmhpcz5r4sg8r4fn5h5lzklfwyzjh3dr25bwjc82jdcysjplg"; depends=[wrapr]; }; + cdata = derive2 { name="cdata"; version="1.0.3"; sha256="0vakyz0asb0fw86lfd1vcc5px45s1xa9f10san0kvlv1qs7agmdz"; depends=[rquery wrapr]; }; cdb = derive2 { name="cdb"; version="0.0.1"; sha256="1rdb4lacjcw67apdyiv7cl1xvv9d1mrzck1qk605n6794k7wf2ys"; depends=[bitops]; }; cdcfluview = derive2 { name="cdcfluview"; version="0.7.0"; sha256="00yc3q28y20l2ppqxy6h53p9fvwhvpkc8m7csmp2lizqh787i2cc"; depends=[dplyr httr jsonlite MMWRweek purrr readr sf units xml2]; }; cdcsis = derive2 { name="cdcsis"; version="1.0"; sha256="1fxdsaqpjhpffn2fxddfcrx8wxwyvfws6rxkpp57g25980xiyzkd"; depends=[ks]; }; @@ -5000,7 +5215,7 @@ in with self; { censorcopula = derive2 { name="censorcopula"; version="2.0"; sha256="16pk4xlpliif02qznrhvl8qmrr6k4kknygqxcm83nsjxy6dcyga8"; depends=[copula]; }; census = derive2 { name="census"; version="0.2.0"; sha256="02qlmifppnfxw7bzh0zngih8z8qz0sxpsi38h7bv324vxx94gvz2"; depends=[ggmap RCurl]; }; censusGeography = derive2 { name="censusGeography"; version="0.1.0"; sha256="1ncgd05ml571g3vy1g4p5xxg2bm08hbb6d5r3hpz7frn7w3l8l1d"; depends=[qdapTools]; }; - censusapi = derive2 { name="censusapi"; version="0.3.0"; sha256="1i3z54ikg6nlxdq3hrb0a58v92lri096jxmkqqdg70rv089wspmf"; depends=[httr jsonlite]; }; + censusapi = derive2 { name="censusapi"; version="0.4.1"; sha256="0lyy5n1zv22l0lwbkllvx0g6i2vzm7srgynmxhyis4d62cygfbdq"; depends=[httr jsonlite]; }; censusr = derive2 { name="censusr"; version="0.0.4"; sha256="1n9571fyr46wj1dcxc2xgns9865655yzlq7yfz8im014wh0ycwqc"; depends=[dplyr httr stringr]; }; censys = derive2 { name="censys"; version="0.1.0"; sha256="0r0yvaidn0qn96hx461415hywsjfgaz9wvvdssx7w97v2ndnk9sy"; depends=[httr jsonlite purrr stringi]; }; centiserve = derive2 { name="centiserve"; version="1.0.0"; sha256="1m6gqz2rk7023340laa5pc0ncbfka2qi9ajvh65fwijd7xvv3n5c"; depends=[igraph Matrix]; }; @@ -5010,10 +5225,10 @@ in with self; { cepp = derive2 { name="cepp"; version="1.7"; sha256="01hvm6586xnb1crvk7brqh3dm2j44ia5lrl5swnf6pb682yskbq0"; depends=[randtoolbox trust]; }; cepreader = derive2 { name="cepreader"; version="1.1-2"; sha256="0pyycacsnbqz7hyrvrwwmmphrhny0byyxv66fwrvcsk3s88a7crf"; depends=[]; }; cernn = derive2 { name="cernn"; version="0.1"; sha256="0gz2x20pgsiq85hwkkpg4s1cdlw9plygx0446djc7qsymp469p2w"; depends=[]; }; - cetcolor = derive2 { name="cetcolor"; version="0.1.0"; sha256="013ghlfs27a585851cir5fxgxhi41h48irq90932y55npa8gwdak"; depends=[]; }; - ceterisParibus = derive2 { name="ceterisParibus"; version="0.2.1"; sha256="0qjdp4mi1s5j6rzp1z858qv8pxsbh9imykpnh6lmg7diawqpll8h"; depends=[DALEX ggplot2 gower knitr]; }; + cetcolor = derive2 { name="cetcolor"; version="0.2.0"; sha256="0kygdcr9ldanr0z4qpygwh0padki7s2ad0j6myky601g4228z79q"; depends=[]; }; + ceterisParibus = derive2 { name="ceterisParibus"; version="0.3.0"; sha256="1ajc5irn9b0ww58vp09pi5bkgx5qdfs5nih9zyayb3nka3jnrkpz"; depends=[DALEX ggplot2 gower knitr]; }; cfa = derive2 { name="cfa"; version="0.10-0"; sha256="12z58y4ls9m58wpj1xa4ir2p2apzxaskps05sxy2946m24i71zfk"; depends=[]; }; - cffdrs = derive2 { name="cffdrs"; version="1.7.6"; sha256="00n3h2vf855anxh0xgsps7sv0kj819864wjdmkiak1lsacysav8s"; depends=[data_table doParallel foreach raster rgdal spatial_tools]; }; + cffdrs = derive2 { name="cffdrs"; version="1.8.1"; sha256="1l3iihqp5yqr7215ahpb80mdd0qr68xfbhskh7ypl9aq6aw4flzd"; depends=[data_table doParallel foreach geosphere raster rgdal spatial_tools]; }; cfma = derive2 { name="cfma"; version="1.0"; sha256="006z5g3rqpg44jqdf6ivyxr47sxm5cd9cqhayfi8qk73xx5w4lv9"; depends=[]; }; cg = derive2 { name="cg"; version="1.0-3"; sha256="1kbyal1sicbr10yvxpwgcij710kqpi23vmndp9kyfzn3k8zfird3"; depends=[Hmisc lattice MASS multcomp nlme rms survival VGAM]; }; cgAUC = derive2 { name="cgAUC"; version="1.2.1"; sha256="172f9rkfhv4xzwpw8izsnsdbcw9p3hvxhh0fd8hzlkil7vskr3k8"; depends=[Rcpp]; }; @@ -5021,66 +5236,72 @@ in with self; { cgdsr = derive2 { name="cgdsr"; version="1.2.10"; sha256="1xyhw7mhmjichr1l6f9y1qvfj9wm87kfbm87ji7lcwf36gxh5g23"; depends=[R_methodsS3 R_oo]; }; cgh = derive2 { name="cgh"; version="1.0-7.1"; sha256="1fgjz43bgnswlyvrm669x697lybq3jyzz4l8ppgxqwxp4p4d2yqn"; depends=[]; }; cghRA = derive2 { name="cghRA"; version="1.6.0"; sha256="16dlw27s8wckc75xcwc2g74pw6bar0y0ii3h53w1hql05d4f7sb8"; depends=[DNAcopy Rgb]; }; - cgmanalysis = derive2 { name="cgmanalysis"; version="1.3"; sha256="0fb93czybl9rpndvz3lykfiwksa154vdrmils8c8l688c62gyq55"; depends=[gdata pracma zoo]; }; - chandwich = derive2 { name="chandwich"; version="1.0.0"; sha256="05x9mg33yl4d9kh5sc4lqi00hwnxdhfg2m0dkm5q0jynkhap7bmz"; depends=[numDeriv]; }; + cglasso = derive2 { name="cglasso"; version="1.1.0"; sha256="0qr6y06aablncj4ja4xjp4dhykqy15qmbigi4px9snpwssrqhwl2"; depends=[igraph MASS]; }; + cgmanalysis = derive2 { name="cgmanalysis"; version="2.0"; sha256="0j8nl0r69hm5niq7bhjc4rh9sjy5x6pd2dxrsqifj9zv7kz4w4yq"; depends=[gdata ggplot2 lubridate pastecs pracma readr zoo]; }; + cgraph = derive2 { name="cgraph"; version="2.0.3"; sha256="1ag7ajva1af08bgn99ib8ryqwdwcw6nfy4yzfpr19831jgq1hsg9"; depends=[R6]; }; + chandwich = derive2 { name="chandwich"; version="1.1.0"; sha256="0m3fw416kf41sb21xdf1qkj7cj24xagzf31g4mryzwags2xlbzyv"; depends=[numDeriv]; }; changepoint = derive2 { name="changepoint"; version="2.2.2"; sha256="1jbki95pck10phpxna0b4i79hhl912zqi5ii9mjqb673y64dszkj"; depends=[zoo]; }; changepoint_np = derive2 { name="changepoint.np"; version="0.0.2"; sha256="03i4l59h8cr6bizbqn288x9r85kvaz1dyhkv5fsj1189qpdi9m88"; depends=[changepoint zoo]; }; changepointsHD = derive2 { name="changepointsHD"; version="0.3.0"; sha256="05zmypz2jz55m9avzg63dmp7fpcgi7jpc9vf2fv0kywcvf2wz5ym"; depends=[Rcpp RcppArmadillo]; }; changepointsVar = derive2 { name="changepointsVar"; version="0.1.0"; sha256="0kj9m9jik1dm5fx4c4hb559f5irpl1mvxk4wwajd5577a2fdqxb5"; depends=[lars MASS]; }; - charlatan = derive2 { name="charlatan"; version="0.2.0"; sha256="1j8lrkh2s7d3jpc07k3rranf8l5rsp1sp9y42fi1rhfkakwssfqd"; depends=[R6 tibble whisker]; }; + changer = derive2 { name="changer"; version="0.0.3"; sha256="1pmnspadkshz7z9f275vks1xjh6a9k37h7j51dqdjrqilzq7y6sf"; depends=[available devtools git2r]; }; + charlatan = derive2 { name="charlatan"; version="0.3.0"; sha256="1i8n6kmdv8f2mnd626qja979qx35fdl1a8r9akgqznh5bhjqiq42"; depends=[R6 tibble whisker]; }; cheb = derive2 { name="cheb"; version="0.3"; sha256="0vqkdx7i40w493vr7xywjypr398rjzdk5g410m1yi95cy1nk4mc7"; depends=[]; }; - chebpol = derive2 { name="chebpol"; version="1.5"; sha256="1fsxvay91yqbhxcxchd6pf9x8jpjm9qp2rvc79wq5l5g4ng617pj"; depends=[]; }; + chebpol = derive2 { name="chebpol"; version="2.0"; sha256="0iz7iz7b1mc67gkgklh8zmnhacgq1cgdfy0w2wd54g0jz934d77p"; depends=[geometry]; }; + checkLuhn = derive2 { name="checkLuhn"; version="1.1.0"; sha256="1s1ix5n98bcbzcvrz5h19sk9pchdvrhpy3ppmw96ys8vylzm58mv"; depends=[dplyr stringr]; }; checkarg = derive2 { name="checkarg"; version="0.1.0"; sha256="0rkdjs2c4yx9laqgayxz57bwxhwgdh6ndrr4i3b1kh31lcmk1xc6"; depends=[]; }; checkmate = derive2 { name="checkmate"; version="1.8.5"; sha256="1q6igk50lq4fp5d3imgcn1j063h3gsp214ra4nlf534hf4wjlkg9"; depends=[backports]; }; - checkpoint = derive2 { name="checkpoint"; version="0.4.3"; sha256="0r7v7ijyq92yd95ssxxbdlp5dv1sd09yvxr8c0yihf48kzw65s63"; depends=[]; }; + checkpoint = derive2 { name="checkpoint"; version="0.4.5"; sha256="0ml6lr8vmnrj2d073mr6dxsy0sqf50vyc956j9pnmzan2k7qv2wc"; depends=[]; }; checkr = derive2 { name="checkr"; version="0.3.0"; sha256="168grrzl17k43fdrh9ps4hvhiyinldlmdq8bwdpj5b5cvvhh22lp"; depends=[]; }; cheddar = derive2 { name="cheddar"; version="0.1-633"; sha256="09mw8rr5xb06gw3hbk7zv2nnx6mwhs6i19ffbp9pv3yv2945cjlf"; depends=[]; }; - chemCal = derive2 { name="chemCal"; version="0.1-37"; sha256="1sbmr8arczc65nzbgr5rfk2mbbnk6h60ni9cd9jngbhgdf0g1scw"; depends=[]; }; + chemCal = derive2 { name="chemCal"; version="0.2.1"; sha256="1kq82x57qm68im6lyqjqmh4p34s4y7fn5v6ymclxjr47mdv8npb5"; depends=[]; }; chemmodlab = derive2 { name="chemmodlab"; version="1.0.0"; sha256="0lzibshhfz52m61xldf0xq4cc1xx64fjlw18hlkiv65dj3gcj2mh"; depends=[caret class e1071 elasticnet foreach lars MASS nnet pls pROC randomForest rpart tree]; }; chemometrics = derive2 { name="chemometrics"; version="1.4.2"; sha256="0shqns0n964pfwnd0q5sadglrlpgs4g5fbv45fsj9p37l4pq61dp"; depends=[class e1071 lars MASS mclust nnet pcaPP pls robustbase rpart som]; }; cherry = derive2 { name="cherry"; version="0.6-12"; sha256="1b74wlvjqxa532gxs400m1k4qs7xwpdap9ms60nlcwr7x1857mk6"; depends=[bitops lpSolve Matrix]; }; chi = derive2 { name="chi"; version="0.1"; sha256="1y91mwahj4j2wz0y5k5vdpq7ygq834h8jkn37n74lqnwvv1968rr"; depends=[]; }; chi2x3way = derive2 { name="chi2x3way"; version="1.1"; sha256="13qc8sigiw4gcxk8y50q7yfgzbssjyl41fizzjqzcp3p14kpsmzw"; depends=[]; }; + chicane = derive2 { name="chicane"; version="0.1.0"; sha256="1f7sxqwg9s8l3lz538kyq8x5csqyq8g67vpm4zh9c962kg5m3f55"; depends=[data_table doParallel foreach gamlss gamlss_tr MASS]; }; childesr = derive2 { name="childesr"; version="0.1.0"; sha256="14jca7lxyn0fip794l70mznhz4ld6iix995wrmiqynxdms6j80np"; depends=[DBI dbplyr dplyr jsonlite magrittr purrr RMySQL]; }; childhoodmortality = derive2 { name="childhoodmortality"; version="0.3.0"; sha256="1ixd10jyzgr1ssnjas35kngpsqyjzl73wwpvcspv06cn12sv2b8d"; depends=[dplyr matrixStats plyr]; }; childsds = derive2 { name="childsds"; version="0.6.7"; sha256="1m5w0wbdk032b6d6h1704wji84yckyl427bja0mb4vqp28m99z48"; depends=[boot class dplyr gamlss gamlss_dist magrittr purrr reshape2 tibble tidyr]; }; chillR = derive2 { name="chillR"; version="0.70.6"; sha256="0vkw9r2k8xdshwb3v90bp93mgbp3vj04c7hjxcmaxpsqkhxwda04"; depends=[fields httr jsonlite Kendall pls R_utils raster RCurl readxl RMAWGEN sp XML]; }; chinese_misc = derive2 { name="chinese.misc"; version="0.1.9"; sha256="1rs16a5rqp0yq1c5j4yl6yji7hf9x76v6x7qmxppshjii5r8055h"; depends=[jiebaR Matrix NLP purrr Ruchardet slam stringi tm]; }; chipPCR = derive2 { name="chipPCR"; version="0.0.8-10"; sha256="1mff7n7ga4sfwvcq7zkjkrl68nybnm2zkn37hmxvnw9yl3ls9lnw"; depends=[lmtest MASS outliers ptw quantreg Rfit robustbase shiny signal]; }; - chngpt = derive2 { name="chngpt"; version="2018.6-2"; sha256="043aw52kimif7wbz87hf7bg0vmd9n73pj87lvqp0ms99jmp7q2w0"; depends=[boot kyotil MASS survival]; }; + chngpt = derive2 { name="chngpt"; version="2018.7-25"; sha256="0c9vxlhrcyrbrp8cj0xvm2z4hy1m2rs538i4kzhrw8xlfiwb8ydd"; depends=[boot kyotil MASS survival]; }; choiceDes = derive2 { name="choiceDes"; version="0.9-3"; sha256="1nsc8p4svfc6z7ckffl24c0acnaxi6cnpz7jq03vzn6spxvpjcmw"; depends=[AlgDesign]; }; - cholera = derive2 { name="cholera"; version="0.4.0"; sha256="0pm5kbaqkxkwzyda4ms90yivx0iv7hcn2z65xfqcqlsxsjbvlmhs"; depends=[deldir HistData igraph KernSmooth pracma RColorBrewer scales sp]; }; + cholera = derive2 { name="cholera"; version="0.5.1"; sha256="0v59pzsi8wg1b7f18zkhxmqldvpan296sw079a58krgcfinjm4ss"; depends=[deldir HistData igraph KernSmooth pracma RColorBrewer scales sp]; }; choplump = derive2 { name="choplump"; version="1.0-0.4"; sha256="0fn6m3n81jb7wjdji4v04m53gakjfsj3ksm546xxz5zm7prk237s"; depends=[]; }; chopthin = derive2 { name="chopthin"; version="0.2.2"; sha256="1ixmgq6igd2ji88qba7scny1j8rrizcf76dk4ymk3hah5dln97fz"; depends=[Rcpp]; }; chords = derive2 { name="chords"; version="0.95.4"; sha256="1v6zvl1mv9fyf6hx1fpbj3i7s893n4y1w4j9rw1arps006qz2jqn"; depends=[MASS Matrix]; }; - choroplethr = derive2 { name="choroplethr"; version="3.6.2"; sha256="0am163df7ggvvk8bk9hjq6f2jc55zzq24skpsgrx1qdlpgv7mls5"; depends=[acs dplyr ggmap ggplot2 gridExtra Hmisc R6 RgoogleMaps scales stringr tigris WDI]; }; + choroplethr = derive2 { name="choroplethr"; version="3.6.3"; sha256="0m6kyrgnv5s1q2ncc63rfxcwqdqx5adqk14q57ss4r84i14dm5yb"; depends=[acs dplyr ggmap ggplot2 gridExtra Hmisc R6 RgoogleMaps stringr tigris WDI]; }; choroplethrAdmin1 = derive2 { name="choroplethrAdmin1"; version="1.1.1"; sha256="13ljs21hdhiv6n4napmk1gjnjhpll6j5wyijzv4xnnbi1y3ns7a9"; depends=[ggplot2]; }; choroplethrMaps = derive2 { name="choroplethrMaps"; version="1.0.1"; sha256="0ghqb2d1h0qkbcsll6ck2qk5sfvdwsrlh3phlbsjbak30832j7fr"; depends=[]; }; - chorrrds = derive2 { name="chorrrds"; version="0.1.4"; sha256="1mfvzj3bwipdhcdhsp66ihchnnvdbcb9zww2a19ldwr6bwx7nfic"; depends=[dplyr httr jsonlite magrittr plyr stringr XML]; }; + chorrrds = derive2 { name="chorrrds"; version="0.1.7"; sha256="0dxy57w91cjfya5v4sgmih0snzqbbqh9ljyk9gb59z83dm6cj9fg"; depends=[dplyr magrittr plyr purrr stringr XML]; }; chromer = derive2 { name="chromer"; version="0.1"; sha256="0fzl2ahvzyylrh4247w9yjmwib42q96iyhdlldchj97sld66c817"; depends=[data_table dplyr httr]; }; chromoMap = derive2 { name="chromoMap"; version="0.1"; sha256="10cj9liggnbnr4isqmm8jp700z3qj4zq0dm7f7jyj7f0lg8my80y"; depends=[htmltools htmlwidgets]; }; chromoR = derive2 { name="chromoR"; version="1.0"; sha256="1x11byr6i89sdk405h6jd2rbvgwrcvqvb112bndv2rh9jnrvcw4z"; depends=[gdata haarfisz]; }; - chron = derive2 { name="chron"; version="2.3-52"; sha256="185lfp75cv3l4cavg64sccj8lgc5sivch13n6gkannv3pd5cyzy4"; depends=[]; }; + chron = derive2 { name="chron"; version="2.3-53"; sha256="02bkywwsxwrxc035hv51dxgdm1fjxdm7dn19ivifln59dfs1862j"; depends=[]; }; chunkR = derive2 { name="chunkR"; version="1.1.1"; sha256="1kw3hsx5k4cdicx0hc1v0mf2nzvqg95shx2xv05vb2pass48qw48"; depends=[Rcpp]; }; chunked = derive2 { name="chunked"; version="0.4"; sha256="0pqk6nnxxnlsw9zal62ajjalrlmvkdrzyz2l8r10jd7s61vhra40"; depends=[DBI dplyr LaF lazyeval]; }; - ciTools = derive2 { name="ciTools"; version="0.3.0"; sha256="0mqrnln7iz6jm30nh1qb2457icaz3hcqmgqbj8m61z0sf6jj9pd7"; depends=[arm boot dplyr lme4 magrittr MASS tibble]; }; + ciTools = derive2 { name="ciTools"; version="0.5.0"; sha256="0gzzzy2siwlhvwfv2hrasz4m9p8qir8w11bhc3hwkcidb4z8ydqs"; depends=[arm boot dplyr lme4 magrittr MASS survival tibble]; }; cifti = derive2 { name="cifti"; version="0.4.5"; sha256="092334lcpkzv52bg53hzx64dnrwq67f3p9fzwchmafx1l46xrqx9"; depends=[gifti oro_nifti R_utils xml2]; }; cin = derive2 { name="cin"; version="0.1"; sha256="1pwvy5nh5nrnysfqrzllb9fcrpddqg02c7iw3w9fij2h8s2v6kq5"; depends=[]; }; cir = derive2 { name="cir"; version="2.0.0"; sha256="0ycjnbikpyhcfdik7c5knw4s9gl8y5h4219c4fhs4axs04np004v"; depends=[]; }; circglmbayes = derive2 { name="circglmbayes"; version="1.2.3"; sha256="1a60d8jpvwx2qwmy2if60c5vni9hp73fdwgz7mwi5xd5l67zwd3h"; depends=[BH coda ggplot2 Rcpp RcppArmadillo reshape2 shiny]; }; circlize = derive2 { name="circlize"; version="0.4.4"; sha256="1l28maiqi549z191srncxgabx5fnvf0lld7smzwfd3vr5cx8nqww"; depends=[colorspace GlobalOptions shape]; }; circular = derive2 { name="circular"; version="0.4-93"; sha256="0hki85rs8wc5950pjaw28q54rly2napfbcrx3pchlfap6wwy5kkn"; depends=[boot mvtnorm]; }; + circumplex = derive2 { name="circumplex"; version="0.2.0"; sha256="1i86b4bqv9s8as5r0y4ldiwikvpx3srn6fy8gd9g098m4khc7kl9"; depends=[assertthat boot dplyr ggforce ggplot2 glue htmlTable magrittr MASS purrr Rcpp RcppArmadillo rlang tibble tidyr]; }; cit = derive2 { name="cit"; version="2.2"; sha256="1lf8r3r4zwvs08vl4byhw6rvf54nb7vg83558pi0b5866m7in4sc"; depends=[]; }; citbcmst = derive2 { name="citbcmst"; version="1.0.4"; sha256="1zkd117h9nahwbg5z6byw2grg5n3l0kyvv2ifrkww7ar30a2yikl"; depends=[]; }; citccmst = derive2 { name="citccmst"; version="1.0.2"; sha256="1b7awn1hjckxisfdi4ck697hwd4a5sqklwi7xzh6kgqhk9pv7vjn"; depends=[]; }; citr = derive2 { name="citr"; version="0.2.0"; sha256="1nzn0yw74k6zkwzb6spfzqkj3cbx6ry6ypbsnhy6w2flabnnvy4v"; depends=[assertthat curl miniUI RefManageR rstudioapi shiny yaml]; }; ciuupi = derive2 { name="ciuupi"; version="1.0.0"; sha256="1c72crf0his7vzmh86isvcvi0ahxnqdq4i6ms84hk20jmlz2hxin"; depends=[functional nloptr pracma statmod]; }; - civis = derive2 { name="civis"; version="1.5.0"; sha256="1cxafcnmbr97i1ygfrwn0d91hyr8irxp1g9zc9zmmaqb3kw5s0sx"; depends=[DBI dbplyr devtools dplyr feather future ggplot2 httr jsonlite lubridate memoise purrr roxygen2 stringr testthat]; }; - cjoint = derive2 { name="cjoint"; version="2.0.6"; sha256="1bhzw751ll43qbyif589yxmi3m1pbm206lqnsc5zcxsnxjf4li5n"; depends=[ggplot2 lmtest Matrix sandwich survey]; }; + civis = derive2 { name="civis"; version="1.5.1"; sha256="13zc0p63i2iqnc27xcnkvhfz0bxyv4grqg4qi8ah7a1n7d2jq2ks"; depends=[DBI dbplyr devtools dplyr feather future ggplot2 httr jsonlite lubridate memoise purrr roxygen2 stringr testthat]; }; + cjoint = derive2 { name="cjoint"; version="2.1.0"; sha256="1bs380ji9vsc1d77wqhl0ij9xblww3g9x3hiwpcpz26wihqcx7ac"; depends=[DT ggplot2 lmtest Matrix sandwich shiny shinyBS shinyjs survey]; }; ck37r = derive2 { name="ck37r"; version="1.0.0"; sha256="0nn2sfsfs8mhgjrz0ghn041ybhj2qim4rs3lkci7s4n95c8hbgdi"; depends=[caret cvAUC doParallel doSNOW foreach ggplot2 pryr randomForest RANN reader RhpcBLASctl ROCR snow stringr SuperLearner tmle]; }; ckanr = derive2 { name="ckanr"; version="0.1.0"; sha256="1cvn0cih763f0ppl1y90vnwj3cgqyb7az89sn12nyn2qb6igiqyl"; depends=[httr jsonlite magrittr]; }; clValid = derive2 { name="clValid"; version="0.6-6"; sha256="1l9q7684vv75jnbymaa10md13qri2wjjg7chr1z1m0rai8iq3xxw"; depends=[class cluster]; }; - cladoRcpp = derive2 { name="cladoRcpp"; version="0.14.4"; sha256="0d4vl7xrrwbhhx56ymw52rb5svw9nskxdya4dl04lw1qxc45p4jy"; depends=[Rcpp RcppArmadillo]; }; + cladoRcpp = derive2 { name="cladoRcpp"; version="0.15"; sha256="0glx3gn2pvisrhplwd89j6l0qs3cfy4qigmncl4n631ic93y3dz4"; depends=[Rcpp RcppArmadillo]; }; clam = derive2 { name="clam"; version="2.3.1"; sha256="1n30fvx4macyawhzv17bzvc1s4qdn51p9mx28apfjbf80qck24g9"; depends=[]; }; clampSeg = derive2 { name="clampSeg"; version="1.0-4"; sha256="0clmv53wz7shawg6mp4q3qp0z0gmd8jmd6flgzn2q1m8j2i62vq0"; depends=[Rcpp stepR]; }; clarifai = derive2 { name="clarifai"; version="0.4.2"; sha256="0igi4xl27nz0r85hpws2zfc2gn5z2nmywp3saxgp74mh2y99lg6s"; depends=[curl jsonlite]; }; @@ -5092,23 +5313,25 @@ in with self; { classifly = derive2 { name="classifly"; version="0.4"; sha256="0mw1vcas0gr1r4yvh0j02zhk7kp5342r0bhhg776hqgqdczgh5zj"; depends=[class plyr]; }; classify = derive2 { name="classify"; version="1.3"; sha256="0134h12h6v06d7ldj9qgqjhh5f5ap98pvr0v6d4k8dqndnn0pggy"; depends=[ggplot2 lattice plyr R2jags Rcpp reshape2]; }; classyfire = derive2 { name="classyfire"; version="0.1-2"; sha256="0rar3mi2m1wf14lmahjbpdh1jlnisvgsbx86xbqlb8c0f8zfzxq3"; depends=[boot e1071 ggplot2 neldermead optimbase snowfall]; }; + classyfireR = derive2 { name="classyfireR"; version="0.1.1"; sha256="0r48xxiqhdgq1mx08ijhr21zj6gihadxajm7w7106xkpkz5diilj"; depends=[clisymbols crayon httr jsonlite magrittr tibble]; }; cld2 = derive2 { name="cld2"; version="1.2"; sha256="03ffg1nxdlmg66sgg0w2jdx2s5jzdp8qhja24z0il2qy3qsa915k"; depends=[Rcpp]; }; cld3 = derive2 { name="cld3"; version="1.1"; sha256="00jbncap8h0s26iw5i0891rag5gpf1n3s9imn6n0zbwdn1791ayr"; depends=[Rcpp]; }; cleanEHR = derive2 { name="cleanEHR"; version="1.0"; sha256="0i8q7y4izc7q1pshdajy0n9wyihj4wlzzkd52ykam3dxqnwlnyh4"; depends=[data_table ggplot2 knitr pander Rcpp XML yaml]; }; cleanNLP = derive2 { name="cleanNLP"; version="2.0.3"; sha256="0hmivb2yhj47alxc9z1hlk23hfan9vz938m6xyp639xf58l97scz"; depends=[dplyr Matrix stringi]; }; + cleandata = derive2 { name="cleandata"; version="0.2.0"; sha256="0mwn016czp1qpc8g5h3l6njcbdbzhm5fm89d6x0jqyxm4v6rgxnr"; depends=[]; }; cleangeo = derive2 { name="cleangeo"; version="0.2-2"; sha256="1bhpn53v36652mwg2ba2a6cs34slb7i0df2ibssyr2lnx5gciq4i"; depends=[maptools rgeos sp]; }; cleanr = derive2 { name="cleanr"; version="1.1.3"; sha256="0vf2c2inb729kzmpxaznqa2zwj80j1ix9198gc36zq41ag5pd7jk"; depends=[checkmate]; }; clere = derive2 { name="clere"; version="1.1.4"; sha256="1nk3chcnaa4y1c5rr6c3bapvi106ikbk9grqcq6s6j0imny1jp4a"; depends=[lasso2 Rcpp RcppEigen]; }; clespr = derive2 { name="clespr"; version="1.1.2"; sha256="1993kd70w48a110im47vcpll0c6nfrm7m33r6l8rzgwnpsmcls8g"; depends=[AER clordr doParallel foreach magic MASS pbivnorm survival]; }; - clhs = derive2 { name="clhs"; version="0.6-0"; sha256="1vw8z4kmmpd8sbx7n8fzdd7lhg10qpnnx31nnjhv4dbd6v2nqii9"; depends=[cluster ggplot2 plyr raster reshape2 scales sp]; }; - cli = derive2 { name="cli"; version="1.0.0"; sha256="07as3dr7vwx02p3qgzlmxz1dlrd3x3lysrzp222ip9jcjpydp8wg"; depends=[assertthat crayon]; }; - clickR = derive2 { name="clickR"; version="0.4.05"; sha256="0vi8bgvnlq09wxzc51kllngcw9dw3j2m2rh6dwa017xml2cl37j8"; depends=[beeswarm boot flextable lme4 lmerTest officer xtable]; }; + clhs = derive2 { name="clhs"; version="0.7-0"; sha256="0wliffs16misvlsxcng89a6yasq9blrlic88n59334vj60p42l3m"; depends=[cluster ggplot2 plyr raster reshape2 scales sp]; }; + cli = derive2 { name="cli"; version="1.0.1"; sha256="1r2yih4c0bdmbx0qrarlf0m1p5z30sri755zmdazsq2pw76zp07g"; depends=[assertthat crayon]; }; + clickR = derive2 { name="clickR"; version="0.4.20"; sha256="140ncl7iv48yxnwf55rf8cwcyznzw7kslkjzymslyqmhvvw43q6p"; depends=[beeswarm boot flextable lme4 lmerTest officer xtable]; }; clickstream = derive2 { name="clickstream"; version="1.3.0"; sha256="01bii527xy7hdph1pm6f1g4qnwa5yf3mwz01rjg1h2gc12s5vzgg"; depends=[arules ClickClust data_table ggplot2 igraph linprog MASS plyr reshape2 Rsolnp]; }; - clifro = derive2 { name="clifro"; version="3.1-5"; sha256="1fbl5zljy60xp3klrsgs84rqw9484xmyq84n3wkrqc6pyvhskp4c"; depends=[ggplot2 lubridate RColorBrewer RCurl reshape2 scales selectr XML]; }; + clifro = derive2 { name="clifro"; version="3.2-0"; sha256="1pq66wg19dvmacqj5pdh8ngxq1irihg76g0hnfy16gxsz7snvnkh"; depends=[ggplot2 lubridate magrittr RColorBrewer RCurl reshape2 scales xml2]; }; clikcorr = derive2 { name="clikcorr"; version="1.0"; sha256="0zdnbcl5q293mmm6pbn4ri7p1q6z6sff74axsb3nyd153v2xamr5"; depends=[mvtnorm]; }; climatol = derive2 { name="climatol"; version="3.1.1"; sha256="012spjgw20bg4rlxgwh05rhaswa4afbd35sq1isidm6i73ma0yjq"; depends=[mapdata maps]; }; climbeR = derive2 { name="climbeR"; version="0.0.1"; sha256="10i74bph7dhv2xj01qdhymlmfwj32lzxivanif11zmzmq9p5bqsw"; depends=[ggplot2]; }; - climdex_pcic = derive2 { name="climdex.pcic"; version="1.1-6"; sha256="0dyhqxrma8g4ny4afv6drr885m88q2b8g1n19yy3yjbrbddyz8yl"; depends=[caTools PCICt Rcpp]; }; + climdex_pcic = derive2 { name="climdex.pcic"; version="1.1-9"; sha256="0bnxdfqc207fjjb8qas9wvmw1kpi69csadx5ylsbxwb53cy1g93i"; depends=[PCICt Rcpp]; }; clime = derive2 { name="clime"; version="0.4.1"; sha256="0qs9i7cprxddg1cmxhnmcfhl7v7g1r519ff2zfipxbs59m5xk9sf"; depends=[lpSolve]; }; climextRemes = derive2 { name="climextRemes"; version="0.2.0"; sha256="0cjvmd48iaid0f95354zpxlgwy79jga9lz0p82yiv0fb2mvjpbqn"; depends=[boot extRemes]; }; climwin = derive2 { name="climwin"; version="1.2.0"; sha256="0xqgf9hmpidxq85rfm0vndh3waw0qf2yhrzmp04sqbbqhzkf9v7n"; depends=[evd ggplot2 gridExtra lme4 lubridate Matrix MuMIn nlme numDeriv plyr RcppRoll reshape]; }; @@ -5124,37 +5347,38 @@ in with self; { clogitboost = derive2 { name="clogitboost"; version="1.1"; sha256="19wcb7229amlxn6xahxj6pf9rwfm02s7qkxz2yvyhnq95y0clxkm"; depends=[Rcpp]; }; clordr = derive2 { name="clordr"; version="1.3.0"; sha256="16cw6i91azi3xw9slzy2v8vpdkqik8k02mvgvcl9a3irbl7wgz10"; depends=[doParallel foreach MASS pbivnorm rootSolve ttutils]; }; cloudUtil = derive2 { name="cloudUtil"; version="0.1.12"; sha256="18g946j00anlk20d0fh01w0xyj1kwyy7jhlgz5a85wmp6s2gkz74"; depends=[]; }; - cloudml = derive2 { name="cloudml"; version="0.5.1"; sha256="1h276vxb1cfqlcbj9fciysdj4wr9zvwglxfq2sh6hh08lm1w3c0z"; depends=[jsonlite packrat processx rprojroot rstudioapi tfruns withr yaml]; }; - clpAPI = derive2 { name="clpAPI"; version="1.2.7"; sha256="19bn5d7qjj7g0x17jnh2snymcn2r2skzj35hkhsgcj5r43834f3r"; depends=[]; }; + cloudml = derive2 { name="cloudml"; version="0.6.0"; sha256="0p34wrrs06c17lbjlkjhm04ffg3l3zfkxb7swikjbim0j5aww2kh"; depends=[config jsonlite packrat processx rprojroot rstudioapi tfruns withr yaml]; }; + clpAPI = derive2 { name="clpAPI"; version="1.2.9"; sha256="1dgfs124lcarcwh75f5mi5z9y723s2ik5kz2g9fxgcama7r01a1x"; depends=[]; }; clttools = derive2 { name="clttools"; version="1.3"; sha256="0va9k1b4xsb2sgpxzvid6sa8m6b8i3r4kgghclmb78nnrs480cwi"; depends=[]; }; clubSandwich = derive2 { name="clubSandwich"; version="0.3.2"; sha256="1q4kidxcarlazh9zaav6vdc7ixb3hdg3zh5kr6mwkm087gi05nw5"; depends=[sandwich]; }; - clue = derive2 { name="clue"; version="0.3-55"; sha256="0hprhzd9i5ifrmfcgddgacg404f6y1zpcpqbyqza4c5lw44am4nc"; depends=[cluster]; }; + clue = derive2 { name="clue"; version="0.3-56"; sha256="1gc7galavhivs2102vvc8c51555hghkawiv8vzciwwpscr19zxg9"; depends=[cluster]; }; clues = derive2 { name="clues"; version="0.5.9"; sha256="0znlsbfmnz5wkp2cswrkjbgchdmmf7h78mv2zwx382m9n9n9hshy"; depends=[]; }; - clusrank = derive2 { name="clusrank"; version="0.5-3"; sha256="0am8q6xc9x9g42gmn0khdizlwrz3ssrripqrw0a36apzk61i6qpp"; depends=[MASS Rcpp]; }; + clusrank = derive2 { name="clusrank"; version="0.6-2"; sha256="1hjxks8cb1mp1d93rcpwqjrxqavspmzjrxvflhv6nqx41ar9dpxv"; depends=[MASS Rcpp]; }; clust_bin_pair = derive2 { name="clust.bin.pair"; version="0.1.2"; sha256="11lqd3vmx4kg08n6iv9na8rra49dkldx4f8jyf43hppbjrbvfinm"; depends=[]; }; clustEff = derive2 { name="clustEff"; version="0.1.2"; sha256="1hy7jc8yfg554l439lfrppdsizrdmvxrqf9dwbkjckbvggg54f0k"; depends=[cluster fda qrcm]; }; clustMD = derive2 { name="clustMD"; version="1.2.1"; sha256="0w4s9dab2mm5x0xibyl6s101c64if945a2cmwin9psd95p76mcny"; depends=[ggplot2 MASS mclust msm mvtnorm reshape2 truncnorm viridis]; }; - clustMixType = derive2 { name="clustMixType"; version="0.1-29"; sha256="01rc84ppy5mw3cdcx15xs6061lg1mwh6kxa80rnj3ax3g10x37sh"; depends=[RColorBrewer]; }; + clustMixType = derive2 { name="clustMixType"; version="0.1-36"; sha256="111pnhj92hly3a1km41wdq3w80s6lld8j31rygbczb5dig5cmlb9"; depends=[RColorBrewer]; }; clustRcompaR = derive2 { name="clustRcompaR"; version="0.2.0"; sha256="151xq8qf1mrl35kyhdliwl2jpdkpkbl3gdnrvrybanihry2p0kqg"; depends=[dplyr ggplot2 ppls quanteda]; }; cluster = derive2 { name="cluster"; version="2.0.7-1"; sha256="1grxbifbc4nwig25dmjgkympnbzb4al0w6k1c0ibdhpk1h4l20di"; depends=[]; }; cluster_datasets = derive2 { name="cluster.datasets"; version="1.0-1"; sha256="0i68s9305q08fhynpq24qnlw03gg4hbk4184z3q3ycbi8njpr4il"; depends=[]; }; - clusterCrit = derive2 { name="clusterCrit"; version="1.2.7"; sha256="13smdm8dmp4795qqn8an3k22l7xs4i4kgazyjzxdbzkg742akk7q"; depends=[]; }; + clusterCrit = derive2 { name="clusterCrit"; version="1.2.8"; sha256="10pz1bikdbkm2ky3xnagp0qv60whalavp6j39b4p7d75jj5xcxgk"; depends=[]; }; clusterGeneration = derive2 { name="clusterGeneration"; version="1.3.4"; sha256="1ak8p2sxz3y9scyva7niywyadmppg3yhvn6mwjq7z7cabbcilnbw"; depends=[MASS]; }; clusterGenomics = derive2 { name="clusterGenomics"; version="1.0"; sha256="127hvpg06is4x486g1d5x7dfkrbk7dj35qkds0pggnqxkq3wsc1c"; depends=[]; }; clusterPower = derive2 { name="clusterPower"; version="0.6.111"; sha256="1mwq188x9d495my75cdcahfjm3w46cas9jqxks5c0j63395cw9g3"; depends=[lme4]; }; - clusterRepro = derive2 { name="clusterRepro"; version="0.5-1.1"; sha256="0vsf6cq6d51a4w23ph8kdz2h8dfpzyd6i85049p2wakn1kdvkz5p"; depends=[]; }; + clusterRepro = derive2 { name="clusterRepro"; version="0.9"; sha256="0s7qqvaf5yxxwhw6qyzfmk65c49yz405gljarwav6aglkx9883cl"; depends=[]; }; clusterSEs = derive2 { name="clusterSEs"; version="2.5"; sha256="0m7vlcjs6zmfaxi1kn68fgcvfrb1gpky2fcg8jhrwc3yxzg23m74"; depends=[AER Formula lmtest mlogit plm sandwich]; }; - clusterSim = derive2 { name="clusterSim"; version="0.47-1"; sha256="0k9cn0ycz7l9g4lb434cqp9yx2ilmp25xa5hlhma9jmxlbdsbji2"; depends=[ade4 cluster e1071 MASS modeest R2HTML rgl]; }; + clusterSim = derive2 { name="clusterSim"; version="0.47-2"; sha256="151cg89ac8b66bgcgpl3w9wvbvxs9g3v9vh8f3z6vg6fklrf5x2d"; depends=[ade4 cluster e1071 MASS modeest R2HTML rgl]; }; clusteredinterference = derive2 { name="clusteredinterference"; version="1.0.0"; sha256="1dnbymivxkrhx39maannhvm8ynlgjxsiavd2d9ych5nq4mjvhnjg"; depends=[cubature Formula lme4 numDeriv rootSolve]; }; clusterfly = derive2 { name="clusterfly"; version="0.4"; sha256="0mxpn7aywqadyk43rr7dlvj0zjcyf4q7qbqw5ds38si7ik34lkrg"; depends=[e1071 plyr reshape2 rggobi RGtk2]; }; clusterhap = derive2 { name="clusterhap"; version="0.1"; sha256="1ic6588mqp146jsvrxlxk449zw4n81xixgrny9r29497z7hg5a1m"; depends=[]; }; clustering_sc_dp = derive2 { name="clustering.sc.dp"; version="1.0"; sha256="0cppka7613cbjjf1q2yp6fln511wbqdhh8d4gs6p0fbq379kzmvc"; depends=[]; }; - clusterlab = derive2 { name="clusterlab"; version="0.0.2.2"; sha256="0pls0yk5x1a48kg1vwzm60yvpmy85gflg9kf0znvkv4k4xrz5smc"; depends=[ggplot2 reshape]; }; - clustermq = derive2 { name="clustermq"; version="0.8.4.1"; sha256="0j8xaj2spqsvr1dmzz2xi8qwwwyvhw8nmrg3jy52zk20pcqw3c03"; depends=[infuser narray progress purrr R6 rzmq]; }; + clusterlab = derive2 { name="clusterlab"; version="0.0.2.5"; sha256="0v9nk92sbca66w416jhvrq3ldgsc76mlir89yi2r4k2i8ymw1xr6"; depends=[ggplot2 reshape]; }; + clustermq = derive2 { name="clustermq"; version="0.8.5"; sha256="0asa48gx9wycp87qgk7f6h27kp4kr5bpxs1lx1j2jm7b1ssqjsm4"; depends=[infuser narray progress purrr R6 rzmq]; }; clusternomics = derive2 { name="clusternomics"; version="0.1.1"; sha256="05nkw6h2dvky07fj50myzw5xlkqyiflbn4vwqw8a1q2idv4awi7b"; depends=[magrittr MASS plyr]; }; clustertend = derive2 { name="clustertend"; version="1.4"; sha256="1aqg8cy1hk3lmzvyqh9qc1mcknrva2i0c77hyd0yff9whz80ik4j"; depends=[]; }; clusteval = derive2 { name="clusteval"; version="0.1"; sha256="1ld0bdl4fy8dsfzm3k7a37cyxc6pfc9qs31x4pxd3z5rslghz7rj"; depends=[mvtnorm Rcpp]; }; clustrd = derive2 { name="clustrd"; version="1.2.2"; sha256="0jcx6afns87wyrc7j2rmc57q4447caxwrkq0j7fys5jbkcidw7bh"; depends=[ca cluster corpcor dplyr dummies fpc GGally ggplot2 ggrepel plyr]; }; + clustree = derive2 { name="clustree"; version="0.2.2"; sha256="14n4h7200r66k74jljkgrihz9znv96d2lr2jp878rq07sszjy90h"; depends=[checkmate dplyr ggplot2 ggraph ggrepel igraph rlang tidygraph viridis]; }; clustsig = derive2 { name="clustsig"; version="1.1"; sha256="0n5nf712vsa8zb0c2lv4gjqsgva62678vjngr9idgswb73shxm8v"; depends=[]; }; clustvarsel = derive2 { name="clustvarsel"; version="2.3.2"; sha256="11xd3pgr4i15q9rcim8y6ybi1iijv59k7f8wh0b2368kz3kz54cj"; depends=[BMA foreach iterators Matrix mclust]; }; clv = derive2 { name="clv"; version="0.3-2.1"; sha256="1qgp2qhblg6ysyrlg0ad169ahwhcyn5pvsqzdlqj700y1k7wl7mc"; depends=[class cluster]; }; @@ -5166,32 +5390,34 @@ in with self; { cmpprocess = derive2 { name="cmpprocess"; version="1.0"; sha256="0gqfmbm86bfi2l81pf2dn70rxg58h1y8hiyrp8sv9v84cx20422v"; depends=[compoisson numDeriv]; }; cmprsk = derive2 { name="cmprsk"; version="2.2-7"; sha256="1imr3wpnj4g57n2x4ryahl4lk8lvq9y2r7319zv3k82mznha8bcm"; depends=[survival]; }; cmprskQR = derive2 { name="cmprskQR"; version="0.9.1"; sha256="002s6ls670sdzrxgqv9gbl646b675q1gn6dzkngnf6rgcdqwid7n"; depends=[quantreg survival]; }; - cmrutils = derive2 { name="cmrutils"; version="1.3"; sha256="0zjc0bwp2p03hmnj3zjw7800pcdw8b8161y68npyp3hya0s4i9x0"; depends=[chron]; }; - cmsaf = derive2 { name="cmsaf"; version="1.9.1"; sha256="02l1g5l42lxg3wlpjg5qm6h8mfr1bdcpi052z8masxf6xf4l0abr"; depends=[fields ncdf4 raster sp]; }; - cmvnorm = derive2 { name="cmvnorm"; version="1.0-3"; sha256="0810kzg78yaxzniq59a4swvdk9qxp37ja52f5n1zssgn0cwz1vk9"; depends=[elliptic emulator]; }; + cmrutils = derive2 { name="cmrutils"; version="1.3.1"; sha256="0nrq84bkd23lvvg8ls2smkjcnfnydhbcni3n6s8w0579i9xga8dv"; depends=[chron]; }; + cmsaf = derive2 { name="cmsaf"; version="1.9.4"; sha256="01z6i3vjilr8nhjkdjifhg3vbfpkk7rii4hlv6rhy9cvpqs6f1d6"; depends=[fields ncdf4 raster sp]; }; + cmvnorm = derive2 { name="cmvnorm"; version="1.0-5"; sha256="1cyiw12fmm83xjlsj8wszyr9sym1b4y3cns6naagvv8037wnh0wb"; depends=[elliptic emulator]; }; cna = derive2 { name="cna"; version="2.1.1"; sha256="1m4920ya3nm5x5yyzpd4g0vgnk4f0lc62c2favymk03ldg6kd6c4"; depends=[matrixStats Rcpp]; }; cnbdistr = derive2 { name="cnbdistr"; version="1.0.1"; sha256="05qi41jimslbngjgbwzfda0q25hb28ax79v9yckvrbpgjc8dk990"; depends=[hypergeo]; }; cncaGUI = derive2 { name="cncaGUI"; version="1.0"; sha256="1v55kvrc05bsm1qdyfw3r3h64wlv3s6clxbr8k512lfk99ry42kn"; depends=[MASS plotrix rgl shapes tcltk2 tkrplot]; }; cnmlcd = derive2 { name="cnmlcd"; version="1.2-0"; sha256="1vpn926wf8vkifscnb35y4c74721iar2wykrl50fcv0fg16yggnd"; depends=[lsei]; }; - coRanking = derive2 { name="coRanking"; version="0.1.3"; sha256="1ss00l0c99fi9p6gcimb31nrl5iflps6lvplnjjqwcqjkb2pjh9p"; depends=[Rtsne scatterplot3d]; }; + coRanking = derive2 { name="coRanking"; version="0.1.4"; sha256="03wvy19jrb3q31yfpmakji25zwc6zx26irj4rwkad81iwdqihq3s"; depends=[]; }; coala = derive2 { name="coala"; version="0.5.2"; sha256="1rj9my20ba79alkhszh5lfvb9gjr6vcgiwqk2szawkpd1np3lpsr"; depends=[assertthat digest R6 Rcpp RcppArmadillo rehh scrm]; }; coalescentMCMC = derive2 { name="coalescentMCMC"; version="0.4-1"; sha256="0xxv1sw5byf84wdypg5sfazrmj75h4xpv7wh4x5cr9k0vgf80b3s"; depends=[ape coda lattice Matrix phangorn]; }; - coalitions = derive2 { name="coalitions"; version="0.6.2"; sha256="0plzrjjsbbr5mw6wqirxp1wgpl2bw2kh0gdalr8c8v2z7hc1d9r6"; depends=[checkmate dplyr forcats gtools jsonlite lubridate magrittr purrr RCurl reshape2 rlang rvest stringr tidyr xml2]; }; + coalitions = derive2 { name="coalitions"; version="0.6.5"; sha256="0s91yg60cpnn2fd185m7bww93kls4qlcq6bcy5nr5kmgiscril3p"; depends=[checkmate dplyr forcats gtools jsonlite lubridate magrittr purrr RCurl reshape2 rlang rvest stringr tidyr xml2]; }; coarseDataTools = derive2 { name="coarseDataTools"; version="0.6-3"; sha256="0f1fkpmqq142yrqzbqv11s5q4jkq7dilmrllcns871hc6vah6ikd"; depends=[MCMCpack]; }; - cobalt = derive2 { name="cobalt"; version="3.3.0"; sha256="12pdcdjca9lncvjpdmpss74sz4jlk33p1l6nmyk2qvwzpf2s8f1d"; depends=[crayon ggplot2 ggstance]; }; + cobalt = derive2 { name="cobalt"; version="3.5.0"; sha256="0vczislwy92a7p91ip0mwhh6v5n4wgk7fy9dqc1r746ivx8h13yv"; depends=[crayon ggplot2 ggstance]; }; + cobiclust = derive2 { name="cobiclust"; version="0.1.0"; sha256="068cqrhx7lxsvcjb62rgrca7y20cybz4445bl1qc6k16ca4bh0m9"; depends=[cluster]; }; cobs = derive2 { name="cobs"; version="1.3-3"; sha256="1pqvz7czcchri4x79g78hbwyagb3bqzdqb047zkbdinyz067c7kb"; depends=[quantreg SparseM]; }; - cocktailApp = derive2 { name="cocktailApp"; version="0.1.0"; sha256="0gc75qy0k01z0r5hl07gyc3gi98fcmapwq523vldp04arn3glnb4"; depends=[dplyr DT forcats ggplot2 ggtern magrittr shiny shinythemes tibble tidyr]; }; + cocktailApp = derive2 { name="cocktailApp"; version="0.2.0"; sha256="05jw72v7gayyfflyy5g249d4sl689a55bf7ycijiks2s5gbj68b6"; depends=[dplyr DT forcats ggplot2 magrittr shiny shinythemes Ternary tibble tidyr]; }; cocor = derive2 { name="cocor"; version="1.1-3"; sha256="106zyrrypil8jyg0pva5zj4hgb53z81nca3d0mh2q3j55zq3wl12"; depends=[]; }; cocoreg = derive2 { name="cocoreg"; version="0.1.1"; sha256="0jrrkak964pl1vih592jgqgl6bw08j0fa1rh3j85x64bqq4m7278"; depends=[abind CCAGFA combinat e1071 ggplot2 glmnet gridExtra MASS multiway pls reshape RGCCA]; }; cocorresp = derive2 { name="cocorresp"; version="0.3-0"; sha256="1r1ssz0cip1gk52nkbr1kpz8gwrg6lwri8ymk41xj2adlsp576v2"; depends=[vegan]; }; cocron = derive2 { name="cocron"; version="1.0-1"; sha256="0dl14y9v9kndy5gzhhbhq3f31ja724y1hra40givy6bij7h2cj30"; depends=[]; }; - coda = derive2 { name="coda"; version="0.19-1"; sha256="14a4a8df4ygj05h37chmdn8kzcqs07fpbflxfrq530563mrza7yl"; depends=[lattice]; }; - coda_base = derive2 { name="coda.base"; version="0.1.9"; sha256="0m4a77l34bk0bwcsvc8654hf5pinf2p7k2223vxkrq5ldylpwqax"; depends=[MASS Rcpp RcppArmadillo]; }; + coda = derive2 { name="coda"; version="0.19-2"; sha256="03fs3sdrrym3is92dgpa6ydk3m63gaihwy7bva4k0wm2hxm7x2k7"; depends=[lattice]; }; + coda_base = derive2 { name="coda.base"; version="0.1.10"; sha256="14qpvwxymgph1zc5f7bskkizq4zilwrl40mjl2j718bpmzk0v4za"; depends=[MASS Rcpp RcppArmadillo]; }; codadiags = derive2 { name="codadiags"; version="1.0"; sha256="1x243pn6qnkjyxs31h1hxy8x852r0fc952ww77g40qnrk8qw79xg"; depends=[coda]; }; - codebook = derive2 { name="codebook"; version="0.5.9"; sha256="12hycq576klq12lqqkwjvxi2k2axl34zs78hfy78mlwlbcgm51gk"; depends=[dplyr DT future ggplot2 haven htmltools knitr labeling likert mice pander psych purrr readr rio rlang rmarkdown skimr stringr tibble tidyr]; }; + codebook = derive2 { name="codebook"; version="0.6.3"; sha256="1ki22x2ngaxg3p7g8jm7d70r17amwgis9ib1nbbfhkp9c6ki6jx9"; depends=[dplyr DT future ggplot2 haven htmltools knitr labeling labelled likert mice miniUI pander psych purrr rio rlang rmarkdown rstudioapi shiny skimr stringr tibble tidyr]; }; codemetar = derive2 { name="codemetar"; version="0.1.6"; sha256="1jjm1c7fkrzyhb57ckdf3d808im5j6c20ykkjsnddh220jy4sgss"; depends=[crul curl desc devtools gh git2r jsonld jsonlite memoise purrr readr sessioninfo stringi stringr tibble usethis whisker]; }; codep = derive2 { name="codep"; version="0.9-1"; sha256="17jziwm56icswa4ngp51ah8w1ma7ij3cksbdaipk0ikqvb5kinkb"; depends=[]; }; codetools = derive2 { name="codetools"; version="0.2-15"; sha256="0h7sjmvvsi35041jp47cxhsqzgf1y8jrw6fxii7n26i8g7nrh1sf"; depends=[]; }; + codified = derive2 { name="codified"; version="0.2.0"; sha256="1hmw7yrw4qx8v9rkqqvqf4013s9whq5qlgwz7v882j4slpvm6gb1"; depends=[checkmate dplyr kableExtra knitr magrittr readr rlang tibble tidyr]; }; codingMatrices = derive2 { name="codingMatrices"; version="0.3.2"; sha256="0kldx2h3mksw4644d0ask6ij7i63rrwk0njlsvkbdjz3bf7pdv1b"; depends=[fractional Matrix]; }; codyn = derive2 { name="codyn"; version="2.0.0"; sha256="1h58w4hb5m8qy7i5h1r7306c5aac1j887aig0imgsjhinj48pi5l"; depends=[assertthat permute vegan]; }; coefficientalpha = derive2 { name="coefficientalpha"; version="0.5"; sha256="0pfw64z7f0gp415nn7519rcw829a7wnwnjx94sc55jsvgb1di3kc"; depends=[lavaan rsem]; }; @@ -5208,8 +5434,9 @@ in with self; { cointmonitoR = derive2 { name="cointmonitoR"; version="0.1.0"; sha256="0rsacvib9prgb199m5ndi0zlgfsvf1giqc5s41wp0yvxdxjdq5lw"; depends=[cointReg matrixStats]; }; colf = derive2 { name="colf"; version="0.1.3"; sha256="1av82yrp6csw7700ymipd02j73cmzn0apv7ykachjw09nzk86kvj"; depends=[nlsr]; }; collUtils = derive2 { name="collUtils"; version="1.0.5"; sha256="0gbk3lrb2lwq2ixrpcngng6qz6axjb4iyqy5606x1zmjm71c060p"; depends=[Rcpp rJava]; }; - collapsibleTree = derive2 { name="collapsibleTree"; version="0.1.6"; sha256="1l02rk1lmm2ac9rr5p1633y1chc203cr9mhlc9s95bv12791i5zb"; depends=[data_tree htmlwidgets]; }; + collapsibleTree = derive2 { name="collapsibleTree"; version="0.1.7"; sha256="0b65pbp1wnpsrayqi630ds4r98jvcvynnlp6wxdqrnnr9nzw5343"; depends=[data_tree htmlwidgets]; }; collectArgs = derive2 { name="collectArgs"; version="0.4.0"; sha256="0fz5w1xsxiddzrwahrg50px4igyhd4plq655jaix6grancs7kvix"; depends=[magrittr]; }; + collections = derive2 { name="collections"; version="0.1.2"; sha256="10crxbbxihcln58j6rlw1kh9qf1njpi0njb7sary80rcfhxwc4w4"; depends=[R6]; }; collpcm = derive2 { name="collpcm"; version="1.0"; sha256="15k6khsgikjpsasyz02bhgd43nij2n7nl0m0sgxvjlcn0nv95y2n"; depends=[latentnet network vegan]; }; colmozzie = derive2 { name="colmozzie"; version="1.1.1"; sha256="0sn7dqg7rnddnmdb10c6scws6kgi1lz4lw8nc698x63z431ah1p8"; depends=[]; }; coloc = derive2 { name="coloc"; version="3.1"; sha256="1321675wz1vn7rcd2sm4c9h183nwnmp0lqww5nykjf792ijyaal8"; depends=[BMA flashClust ggplot2 reshape snpStats speedglm]; }; @@ -5219,18 +5446,19 @@ in with self; { colordistance = derive2 { name="colordistance"; version="1.0.0"; sha256="1z4pa5byk1ag6pqdqi6sn5z6caak4733399gk6zp4wi4kfd9p64a"; depends=[abind ape clue emdist gplots jpeg magrittr mgcv plotly png scatterplot3d spatstat]; }; coloredICA = derive2 { name="coloredICA"; version="1.0.0"; sha256="1xj4dsrwgqzm2644nk3y8nj47m036b4ylh6v60jccj3707spb32r"; depends=[MASS]; }; colorednoise = derive2 { name="colorednoise"; version="1.0.3"; sha256="1idwb4w1r7jpjvrlly8326i4d9lw6bjlmlb591hgwl5xdf4599gi"; depends=[dplyr purrr Rcpp RcppArmadillo tidyr]; }; + colorfindr = derive2 { name="colorfindr"; version="0.1.3"; sha256="0h74075km6hxf9j35iwsd3af0igfpplgjnh3lzgkdqw0shp86iy8"; depends=[bmp dplyr jpeg magrittr pixmap plotly plotwidgets png purrr rsvg stringr tibble tiff treemap]; }; colorfulVennPlot = derive2 { name="colorfulVennPlot"; version="2.4"; sha256="01b3c060fbnap78h9kh21v3zav547ak2crdkvraynpd2096yk51w"; depends=[]; }; colorhcplot = derive2 { name="colorhcplot"; version="1.3.1"; sha256="009pyyb30kwshldd7v7zfy5rxys6i0dhlc5w8ail61acbg4rlrmz"; depends=[]; }; colormap = derive2 { name="colormap"; version="0.1.4"; sha256="0032ji9n8pivl70jppq989fgg781wil8zag7pfl1hs9xrpin8asy"; depends=[ggplot2 stringr V8]; }; colorpatch = derive2 { name="colorpatch"; version="0.1.2"; sha256="18p9hgccp37pbdf437xffkv6z500896v08fsw2jm8zcl9ladygaf"; depends=[colorspace ggplot2 gridExtra TSP]; }; - colorplaner = derive2 { name="colorplaner"; version="0.1.3"; sha256="0mqqk59yjklbc7a0n7jgyhj458622dfdsa1101a5w6kwppbjvnfg"; depends=[digest ggplot2 gtable scales]; }; colorr = derive2 { name="colorr"; version="1.0.0"; sha256="1wwrgb9fc9gzxxwxrdrkwwrmhqqllv29wr4q8y1shj9d3nzcpwmh"; depends=[]; }; - colorscience = derive2 { name="colorscience"; version="1.0.4"; sha256="19943gnzszh13mg74clbkhbc6xg4259ilqk19mrv8d6ml6f6wspl"; depends=[Hmisc munsellinterpol pracma sp]; }; + colorscience = derive2 { name="colorscience"; version="1.0.5"; sha256="0pr28fhv7alvki9f6wncys8lxihsl6q6lr8xffw4fkkgyapnhqxg"; depends=[Hmisc pracma sp]; }; colorspace = derive2 { name="colorspace"; version="1.3-2"; sha256="0d1ya7hx4y58n5ivwmdmq2zgh0g2sbv7ykh13n85c1355csd57yx"; depends=[]; }; colortools = derive2 { name="colortools"; version="0.1.5"; sha256="0z9sx0xzfyb5ii6bzhpii10vmmd2vy9vk4wr7cj9a3mkadlyjl63"; depends=[]; }; colourlovers = derive2 { name="colourlovers"; version="0.2.2"; sha256="0fgxs73l4g1lnmc2q613ykxxrbmvq6w66zpidccqg64wa9cy5yhm"; depends=[jsonlite png XML]; }; colourpicker = derive2 { name="colourpicker"; version="1.0"; sha256="0z3v2083g7kwdp21x9s2n1crfh24agpdq3yxkcdzc2awn2pwpnpi"; depends=[ggplot2 htmltools htmlwidgets jsonlite miniUI shiny shinyjs]; }; - colourvision = derive2 { name="colourvision"; version="2.0.1"; sha256="009nssi996dakjggk64zzmfx9mjdfj04kfy7ds3c9fsb39ynz1ag"; depends=[Matrix rgl]; }; + colourvalues = derive2 { name="colourvalues"; version="0.1.1"; sha256="1ip1linid749h5lv0x1jlndwx57n8qidglcghspdpnvsccl8cm03"; depends=[BH Rcpp]; }; + colourvision = derive2 { name="colourvision"; version="2.0.2"; sha256="15ndhqpp5fi9jgiri9ysl68nf4rdamh9c25svf5nvh2wvv8shrd9"; depends=[Matrix rgl]; }; colr = derive2 { name="colr"; version="0.1.900"; sha256="0ilz1y0jd2vgyh81g3dwx2l64sir6z6sgmqx7lnvr1hafsqnwfc8"; depends=[]; }; colt = derive2 { name="colt"; version="0.1.1"; sha256="028jqvgr14ig8jxp8h2lrf7mainzppgqh6v1479qfv4l9is3bnwy"; depends=[crayon]; }; comato = derive2 { name="comato"; version="1.1"; sha256="0lidwr5vw10655p7q0iqzq3phq5y1i86w3bjdv87cwx3m6333bz6"; depends=[cluster clusterSim gdata igraph lattice Matrix XML]; }; @@ -5241,31 +5469,34 @@ in with self; { comf = derive2 { name="comf"; version="0.1.7"; sha256="1waxapw870fssmy9mzzpslypbal7vanlajzv9ffnsh5w2yzjdpfi"; depends=[plyr]; }; commandr = derive2 { name="commandr"; version="1.0.1"; sha256="1d6cha5wc1nx6jm8jscl7kgvn33xv0yxwjf6h3ar3dfbvi4pp5fk"; depends=[]; }; commentr = derive2 { name="commentr"; version="1.0.4"; sha256="0anlcbk8rj0yr8i23qmr6v5ws0695nkc3mvgr6pnq1fg2d4c4brj"; depends=[stringr]; }; - commonmark = derive2 { name="commonmark"; version="1.5"; sha256="1jwx5rgm0ypd9a3v4jd9za4a644rdzhk1n4dvmgkj9hdpwsida3z"; depends=[]; }; - commonsMath = derive2 { name="commonsMath"; version="1.1"; sha256="0v9jlk75ihh8yjhq5ybighvndp0hn1d6rqh78jkh4g6ylhbpvcw0"; depends=[]; }; - comorbidity = derive2 { name="comorbidity"; version="0.1.1"; sha256="0xb3k2ql3ikdbyx8l73wsrwi62ayapszbrygk8arw1g2n0yqz2f4"; depends=[checkmate]; }; + commonmark = derive2 { name="commonmark"; version="1.6"; sha256="1xymqncf8byqxzpx64zlp6vbx7gry572jkr2ax0zlavr8bli861x"; depends=[]; }; + commonsMath = derive2 { name="commonsMath"; version="1.2"; sha256="1j914f4fqrzp4wwis7i14krsxbdwb2dznzrjdnimy1irs1macyw3"; depends=[]; }; + comorbidity = derive2 { name="comorbidity"; version="0.2.0"; sha256="0imdnd9fxbl0d5vy1ia7844har8k689mvwbqa7pdy3rz9wmp2q3z"; depends=[checkmate stringi]; }; compHclust = derive2 { name="compHclust"; version="1.0-3"; sha256="0agay7rn5mrw07imz4l547b7m9pfcg3rhz4krfxrvg1q2z2kryvj"; depends=[]; }; compactr = derive2 { name="compactr"; version="0.1"; sha256="0f2yds6inmx0lixj08ibqyd2i61l2cbg1ckgpb8dl2q7kcyyd6mx"; depends=[]; }; compare = derive2 { name="compare"; version="0.2-6"; sha256="0k9zms930b5dz9gy8414li21wy0zg9x9vp7301v5cvyfi0g7xzgw"; depends=[]; }; compareC = derive2 { name="compareC"; version="1.3.1"; sha256="0dachfr23lps2jj1y5gc958k54vskmww84gdgk4amihsdgjsnphg"; depends=[]; }; - compareDF = derive2 { name="compareDF"; version="1.5.0"; sha256="0nn8yimmi1yqb5qf4brx7i8zps1mfh6w3gfx3xpsaigk1miik1hb"; depends=[dplyr htmlTable stringr tidyr]; }; + compareDF = derive2 { name="compareDF"; version="1.7.0"; sha256="0gcvhw4rsf9rrx1xb4mv8d5bjvrs51fqgl6vdd8c8jpvdy01q2i5"; depends=[dplyr htmlTable magrittr stringr tidyr]; }; compareGroups = derive2 { name="compareGroups"; version="3.4.0"; sha256="057578433ms4q2xs62zbv36gwx67ihwdlxl243p10y1y7ps335kg"; depends=[epitools gdata HardyWeinberg Hmisc knitr rmarkdown SNPassoc survival xtable]; }; compareODM = derive2 { name="compareODM"; version="1.2"; sha256="019hq8j56asjvh4x1p65785mf38xr05j3by0749gl9k9yl8645da"; depends=[XML]; }; comparer = derive2 { name="comparer"; version="0.1.1"; sha256="1nmvqzrvyxdsidkr243qdn0lj2s7j3jv1sh0mdlxm2v5063nyryr"; depends=[progress]; }; comparison = derive2 { name="comparison"; version="1.0-4"; sha256="0pc462rhk8gr8zrf08ksi315kmhydlp027q5gd40ap5mmhk7rd82"; depends=[isotone]; }; + compboost = derive2 { name="compboost"; version="0.1.0"; sha256="0q7jfj5yc2jvddyyhnzv8fnlmngjfws7cg2blxai76s2fw6bmgxp"; depends=[checkmate glue R6 Rcpp RcppArmadillo]; }; compeir = derive2 { name="compeir"; version="1.0"; sha256="1bb5459wcqpjic2b9kjn0l0qdn7sqmmx34hdb2aqg80q22mhx5dv"; depends=[etm lattice]; }; compendiumdb = derive2 { name="compendiumdb"; version="1.0.3"; sha256="0glaqlzz5wr14yfhka1y7yw5ha6yc4waw61msbz0vkwj5z2hd2hk"; depends=[Biobase GEOquery RMySQL]; }; comperank = derive2 { name="comperank"; version="0.1.0"; sha256="0fxg32kp4v42455fia48rnbd3v84g4vsh4r4qc29d0gg93ymz9hp"; depends=[comperes dplyr Rcpp rlang tibble]; }; - comperes = derive2 { name="comperes"; version="0.2.0"; sha256="0h531xbaidh0ld16q1q4jlx4yshyiczx464x0kkyrrr7ysg527pp"; depends=[dplyr magrittr rlang tibble tidyr]; }; + comperes = derive2 { name="comperes"; version="0.2.1"; sha256="1mi7x7634lxzzpp1z6xq0pbmfq3p63mqy3kvk19xjfbiz3drakw3"; depends=[dplyr magrittr rlang tibble tidyr]; }; compete = derive2 { name="compete"; version="0.1"; sha256="1b1320jw8pcnjkzb0lr8j6d3z7yhlq31gszd79wdcmwnpzap9k0z"; depends=[igraph sna]; }; complexity = derive2 { name="complexity"; version="1.1.1"; sha256="1lpsvry88jpqfw0wkdlwjzkqjl17f4adjcqvq0dwk483mi54xnfk"; depends=[combinat shiny]; }; complexplus = derive2 { name="complexplus"; version="2.1"; sha256="16w9v7d1ckavqmr86l34frr37pkvdn0iqnb17ssb8xaggns5lgqx"; depends=[expm Matrix]; }; complmrob = derive2 { name="complmrob"; version="0.6.1"; sha256="1dr80r1p05h3mlnjbgh6kfw86np8y2bhy9yi5qydv85w52k133n1"; depends=[boot ggplot2 robustbase scales]; }; compoisson = derive2 { name="compoisson"; version="0.3"; sha256="0v5dl7xydqi4p97nipn4hyhpq2gghmx81ygvl0vc8b65jhq89y0p"; depends=[MASS]; }; compositions = derive2 { name="compositions"; version="1.40-2"; sha256="12mp05yi7jkdqg9iwh6bc9sx6sdxagcnrirznxy9hq8502p7238i"; depends=[bayesm energy robustbase tensorA]; }; - compound_Cox = derive2 { name="compound.Cox"; version="3.12"; sha256="143a0vgv86n1pz6442r7nk7hh04brz1x3na8msnm9njxf0qqjwpm"; depends=[numDeriv survival]; }; + compound_Cox = derive2 { name="compound.Cox"; version="3.14"; sha256="118s0j8xkv0fk8hvzfyw2dwkh76ky5k98dnh92vh6akcz1wm0iam"; depends=[numDeriv survival]; }; compute_es = derive2 { name="compute.es"; version="0.2-4"; sha256="1b5i8z66zbag0vdv98mmpwmizpm68vc3ajh0n3q94zdcmhcbx12d"; depends=[]; }; - comtradr = derive2 { name="comtradr"; version="0.2.1"; sha256="0l14qwvnzll98jp235ip6skmr3fdr1y5niqjwhz9nyk8spfbyvp1"; depends=[httr jsonlite magrittr purrr]; }; + comtradr = derive2 { name="comtradr"; version="0.2.2"; sha256="177gnmgwqns65z5y9nw4xp8qmw5z70454zb54jw1879xrgfsrciz"; depends=[httr jsonlite magrittr purrr]; }; + con2aqi = derive2 { name="con2aqi"; version="0.1.0"; sha256="1gdd1y6xg26fz199hvryzsnp16qbsz13chqqxyxnkgrai1l72mhf"; depends=[]; }; + conStruct = derive2 { name="conStruct"; version="1.0.1"; sha256="1b20r2a2xn3fwa131sk6gdhpxw79g6316fws12iph2vw0lp0gyka"; depends=[BH caroline doParallel foreach gtools Rcpp RcppEigen rstan rstantools StanHeaders]; }; concatenate = derive2 { name="concatenate"; version="1.0.0"; sha256="1kvsw7vwa3hn97ff7r6z21h5ajs74azwv2dk4pzgyaasnbp778hw"; depends=[]; }; concaveman = derive2 { name="concaveman"; version="1.0.0"; sha256="0b6a37h4k3p879gp4qp3297q0fzq3yn79yhkwjrcxhcl86sg5nb6"; depends=[dplyr jsonlite magrittr sf V8]; }; conclust = derive2 { name="conclust"; version="1.1"; sha256="1k9y1mniy7s51dmm5ia693k72s2vxk5bznxxf74s7mx9n3mg2i8r"; depends=[]; }; @@ -5281,22 +5512,22 @@ in with self; { conditions = derive2 { name="conditions"; version="0.1"; sha256="0vhqkbsil3qfvrz7924i3wvjknw69cp27g7ayapf6w94bbggx4x8"; depends=[]; }; condmixt = derive2 { name="condmixt"; version="1.0"; sha256="05q1fj7akf6lsq9rbcqqkzlx82jvk6mlvmwx6jzk8j228fwqmg90"; depends=[evd]; }; condusco = derive2 { name="condusco"; version="0.1.0"; sha256="0zydinzlksynkz4r712rzv9qqdx8dkdz3h1ygi9cfmd6hya3580s"; depends=[assertthat bigrquery DBI jsonlite]; }; - condvis = derive2 { name="condvis"; version="0.4-2"; sha256="0l515wpsmh7g4q4w29gb1gv5kafwzfhb8as0ml8vbbrh6xcgmz9q"; depends=[MASS]; }; + condvis = derive2 { name="condvis"; version="0.5-1"; sha256="1ngxqfa0mr86cv610da4ljypxpdvx0n5pfgj3zfksnwxlwc0dvbj"; depends=[MASS]; }; coneproj = derive2 { name="coneproj"; version="1.14"; sha256="0km7njsxjgrv4d8bx709nci59ngm00jg1r55702yapyjl0f2zg93"; depends=[Rcpp RcppArmadillo]; }; - conf = derive2 { name="conf"; version="1.2"; sha256="1xk3b94k73msj2mykxr0b9q472biz40qnckkym82b4vqmga1c0rs"; depends=[SDMTools STAR statmod]; }; + conf = derive2 { name="conf"; version="1.3.3"; sha256="0hankl9grc149r82v93iwrk6hf19n5ipay80cc9zv034wv2249w1"; depends=[SDMTools STAR statmod]; }; conf_design = derive2 { name="conf.design"; version="2.0.0"; sha256="06vdxljkjq1x56xkg041l271an1xv9wq79swxvzzk64dqqnmay51"; depends=[]; }; confSAM = derive2 { name="confSAM"; version="0.2"; sha256="1l67ndya07hh0yqfbabfhsvp3hryklx0022grpr0cb7ff88d1zam"; depends=[]; }; confidence = derive2 { name="confidence"; version="1.1-2"; sha256="0m6iz59n5jpi0ig3za3nir4d4bdsysf5g47d2nakfmaz03wk520z"; depends=[ggplot2 knitr markdown plyr xtable]; }; config = derive2 { name="config"; version="0.3"; sha256="0l67nfpm42ssnk0bl4jmq6bibz8hawgfgh2s14s5c8mnimv6mpjs"; depends=[yaml]; }; configr = derive2 { name="configr"; version="0.3.3"; sha256="08fa04sjh2k6mbv998bp6cd7rh47j0ic3bcqdhr7zqlbd1g670x2"; depends=[glue ini jsonlite RcppTOML stringr yaml]; }; confinterpret = derive2 { name="confinterpret"; version="1.0.0"; sha256="0qldaqpx7kpk71zfwv465jrscwzc9w3xfv52i4h01k9aw3q6m8ja"; depends=[]; }; - conflicted = derive2 { name="conflicted"; version="0.1.0"; sha256="0dai0dvb3sbnjspg5wdwm4j5d11xkmrvpjjxpzb7s70d8wp4c72h"; depends=[rlang]; }; + conflicted = derive2 { name="conflicted"; version="1.0.1"; sha256="0hj9dvyi59y917cac1d3g1bgaghs40nr71z3y2msr29q01d1sqkp"; depends=[memoise rlang]; }; conformalClassification = derive2 { name="conformalClassification"; version="1.0.0"; sha256="03v6xbgipb97byarqj0d38z9yb2g54mkkw343jxmi2j058z26yw7"; depends=[doParallel foreach mlbench randomForest]; }; confreq = derive2 { name="confreq"; version="1.5.1"; sha256="0gy6d1kffb1w86ifldswb9krxyc2p646g9yjlfm1h243qlp52sfa"; depends=[gmp]; }; congressbr = derive2 { name="congressbr"; version="0.1.3"; sha256="1c29nqnhiyr9y2hs5lwpqa7c54qcqfr74l5mzh13dlccz3zsm2p1"; depends=[dplyr httr lubridate magrittr pscl purrr stringi stringr tibble tidyr xml2]; }; conicfit = derive2 { name="conicfit"; version="1.0.4"; sha256="1d704xgiyqmbwfxnsmhqg885x10q8yqxmrk4khqpg3lh696bw97d"; depends=[geigen pracma]; }; conics = derive2 { name="conics"; version="0.3"; sha256="06p6dj5dkkcy7hg1aa7spi9py45296dk0m6n8s2n3bzh3aal5nzq"; depends=[]; }; - conjoint = derive2 { name="conjoint"; version="1.39"; sha256="0f8fwf419js9c292i3ac89rlrwxs2idhwxml1qd8xd2ggwfh6w5m"; depends=[AlgDesign clusterSim]; }; + conjoint = derive2 { name="conjoint"; version="1.41"; sha256="1iq3226a6fn1gddmh2nxlzvjcvbj7502r9520g9d4xdmk8smfx33"; depends=[AlgDesign broom cluster fpc ggfortify ggplot2]; }; conover_test = derive2 { name="conover.test"; version="1.1.5"; sha256="0f1p10klidk1xic1wd48j9rjh2fb3z6pfjx4y021lglx1w3av68k"; depends=[]; }; constants = derive2 { name="constants"; version="0.0.2"; sha256="1j9d52riwx7v1ppfdw0x517j7xh92qgskd4mj5yk9qa233brcwyy"; depends=[]; }; constellation = derive2 { name="constellation"; version="0.2.0"; sha256="1d49rnyf2z3bvx158nsmgmb0x7xcgxl9f8y98pwg5wlqck7af99q"; depends=[data_table]; }; @@ -5310,14 +5541,14 @@ in with self; { controlTest = derive2 { name="controlTest"; version="1.1.0"; sha256="19r8nvi35ldzgayifskjj706fv76hv6sj68yvggybp27rgyqbjfl"; depends=[survival]; }; convertGraph = derive2 { name="convertGraph"; version="0.1"; sha256="1jsrygj6ydzc0nzyzaq95j4blqavj7dqz182vgm1ckv8an3if0jx"; depends=[]; }; convertr = derive2 { name="convertr"; version="0.1"; sha256="1y9aq5in2qv1323amblmq3g22flpqvpkgkrw12kahg56mqf2b3iq"; depends=[DT miniUI rstudioapi shiny]; }; - convevol = derive2 { name="convevol"; version="1.1"; sha256="1d9h2vjzfmnbm4aprbvhndgjh85zp3j1hssm9082nw7zb9ycxs1s"; depends=[ape cluster geiger MASS phytools]; }; + convevol = derive2 { name="convevol"; version="1.2"; sha256="106x3qj5m8flcq4ixrvh0fv0kkcc7595ym4bg9dxjhdx4v0zhnbg"; depends=[ape cluster geiger MASS phytools]; }; convexjlr = derive2 { name="convexjlr"; version="0.7.0"; sha256="1dxvz5jnflswqh7iqc4fw7gbp8s6qn7rfy2b5qx4jklrvfj696yj"; depends=[JuliaCall magrittr XRJulia]; }; convey = derive2 { name="convey"; version="0.2.1"; sha256="1fcfzcpiy35xr2i81q002h07zf8gvbv1m5is7j475bi13666ynzh"; depends=[survey]; }; convoSPAT = derive2 { name="convoSPAT"; version="1.2.4"; sha256="0by1z2z7gzycwrll1agkqnpn5h5cjr6b62gpwy11wl4lh48p4213"; depends=[ellipse fields geoR MASS plotrix StatMatch]; }; cooccur = derive2 { name="cooccur"; version="1.3"; sha256="1wlaghhi4f3v8kzwhcgq3c6as7v3zlpkzhb232qz1amr7f0058kv"; depends=[ggplot2 gmp reshape2]; }; cooccurNet = derive2 { name="cooccurNet"; version="0.1.6"; sha256="1vqfmvjrxxn977jrry47wn4lag4yi4bkyxwlis3n1ly39kkmyh2j"; depends=[bigmemory doParallel foreach igraph knitr Matrix pryr seqinr]; }; coop = derive2 { name="coop"; version="0.6-1"; sha256="1hr78w7qlslpwnrz9mk6w4p5qa8sxhkzans5givy5hf9qkykn0dp"; depends=[]; }; - coopProductGame = derive2 { name="coopProductGame"; version="1.0"; sha256="0vzx9f6za2zms9sda8p19gcmp4g6y87p91ydybjv8lz9na8hl3ix"; depends=[dplyr GameTheory ggplot2 gtools kappalab lpSolveAPI]; }; + coopProductGame = derive2 { name="coopProductGame"; version="2.0"; sha256="1348pgqfvvysdixsjibgkvwjsmqasnlmwf9kyr39lw8jb81z25h0"; depends=[dplyr GameTheory ggplot2 gtools kappalab lpSolveAPI]; }; cooptrees = derive2 { name="cooptrees"; version="1.0"; sha256="0izvwna1jsqik3v5fz1r4c86irvma42clw0p4rdvwswv5pk698i1"; depends=[gtools igraph optrees]; }; copBasic = derive2 { name="copBasic"; version="2.1.0"; sha256="16iax25jzm9613i2ml5d4xjknhycallrbcxhrsrsp8znlclbglqs"; depends=[lmomco randtoolbox]; }; copCAR = derive2 { name="copCAR"; version="2.0-2"; sha256="032gphv64v2mmy63q86qgpa31i36ix6fkjsdxmzgqyxcyzgb0jcy"; depends=[mcmcse numDeriv Rcpp RcppArmadillo spam]; }; @@ -5326,7 +5557,7 @@ in with self; { coprimary = derive2 { name="coprimary"; version="1.0"; sha256="0pjln9p5lzv6wl5xrz0kb90hnjlnp7ch2kvh054nxdbmlxv5akc3"; depends=[digest gsDesign plyr proto]; }; copula = derive2 { name="copula"; version="0.999-18"; sha256="1xdjnp8zgla2hixyp524nvgbji0jcrmqc4j99hr8xp9365xb6z86"; depends=[ADGofTest colorspace gsl lattice Matrix mvtnorm numDeriv pcaPP pspline stabledist]; }; copulaData = derive2 { name="copulaData"; version="0.0-1"; sha256="1s917g8wasxndg1xq4b4fjaq29nyzzigpflgqcy4rxdb7r54dl0z"; depends=[]; }; - copulaedas = derive2 { name="copulaedas"; version="1.4.2"; sha256="09w6b1m1lnlnsx0qp2mzlp0z9rxzz90qs9jqzwwjl56lzdad3vpr"; depends=[copula mvtnorm truncnorm vines]; }; + copulaedas = derive2 { name="copulaedas"; version="1.4.3"; sha256="01wp8jnz7kndknj7lh9ia7mm41k1vbaksalyy9v19bb77yhgzmba"; depends=[copula mvtnorm truncnorm vines]; }; corHMM = derive2 { name="corHMM"; version="1.22"; sha256="03di9250hjn5fiwn47f0pr4zprmsza4if3xpmy3j1czahc8zlqnj"; depends=[ape corpcor expm GenSA nloptr nnet numDeriv phangorn Rmpfr]; }; corTest = derive2 { name="corTest"; version="0.9.6"; sha256="1ccb38jyl2nyff2m71pba7vs13nl59zzpdnc7k68333dd8p7zswa"; depends=[MASS]; }; corTools = derive2 { name="corTools"; version="1.0"; sha256="0arvqk2xp19ap73zmdk0kb1fycb3v2mf65b4bhanvcqwr4kg4vdk"; depends=[]; }; @@ -5341,7 +5572,7 @@ in with self; { corkscrew = derive2 { name="corkscrew"; version="1.1"; sha256="1nb81r4lsrajcj3xz3f7p6xznnb38yg3rnnh44rd3kabca4d8r1s"; depends=[ggplot2 gplots igraph RColorBrewer]; }; corlink = derive2 { name="corlink"; version="1.0.0"; sha256="06n9pcvbn8y9gy0mn9c0sw05424ss8smpaw3ly6a785cmj3d9b6m"; depends=[]; }; corpcor = derive2 { name="corpcor"; version="1.6.9"; sha256="1hi3i9d3841snppq1ks5pd8cliq1b4rm4dpsczmfqvwksg8snkrf"; depends=[]; }; - corpora = derive2 { name="corpora"; version="0.4-3"; sha256="0zh8mabfy9yqgx7asi4yqv4c0kj59yvyxxaxjgdjy5kkr17zd4g4"; depends=[]; }; + corpora = derive2 { name="corpora"; version="0.5"; sha256="0b4yw37msx9h8hf5mjs4h10gdmc1qc2gv5bzyj1r90n4gcli042d"; depends=[]; }; corpus = derive2 { name="corpus"; version="0.10.0"; sha256="0c984rsnbai2qrm2s10lkdfgx31m0ax46zhl74bns2bxfmagcn3l"; depends=[utf8]; }; corpustools = derive2 { name="corpustools"; version="0.3.3"; sha256="1hgcwnjhqfyylvqcy2j5f2k6chwyybnx38vzzvq62s6qf6p9p7by"; depends=[data_table Matrix memoise plyr R6 Rcpp SnowballC stringi udpipe wordcloud]; }; corr2D = derive2 { name="corr2D"; version="0.2.0"; sha256="02z9k0j6j8jyjfgff55amkzsa5w0xbr9nqm1247qylsh8sl2rqcz"; depends=[colorspace doParallel fields foreach mmand rgl]; }; @@ -5349,20 +5580,21 @@ in with self; { correctedAUC = derive2 { name="correctedAUC"; version="0.0.3"; sha256="0c2kq7asq5mp48p8niqb84wnw4q2q2985wxbrywrhsszm9p3xspb"; depends=[ICC mnormt]; }; corregp = derive2 { name="corregp"; version="2.0.2"; sha256="1v048dibn2x3y5mi2damcsr9i5kdig5n53g5j9gf31lqkzzjmnh3"; depends=[data_table diagram ellipse gplots rgl]; }; correlbinom = derive2 { name="correlbinom"; version="0.0.1"; sha256="1ix3ccxzr7vqblbda5awsva3h95b69v7kc6adz622bbi8r36xxcq"; depends=[Rmpfr]; }; - corrgram = derive2 { name="corrgram"; version="1.12"; sha256="1z0h2mkf4805w3wnhy31cf1gm9miliapxchgc4ksg3kx2799gv91"; depends=[seriation]; }; + corrgram = derive2 { name="corrgram"; version="1.13"; sha256="1g5159vihsz5a2cfmg4g4i1lildn2x2wzck5sd0vml5810rxjpma"; depends=[seriation]; }; corrplot = derive2 { name="corrplot"; version="0.84"; sha256="1k03qd8db7pwg1v318xapx5mpiypiz2n07qr19c4b45diri5xkhd"; depends=[]; }; - corrr = derive2 { name="corrr"; version="0.2.1"; sha256="1d04nk92fjmk4kc5zipjqjhhmb1w97kid7l2jz5a8pkwiccn5byc"; depends=[dplyr ggplot2 ggrepel lazyeval magrittr purrr seriation tibble tidyr]; }; + corrr = derive2 { name="corrr"; version="0.3.0"; sha256="1l5157m4k5zvxnkgndvkxc0ghcsgxvm5jr6hpbpdc6s1nnz7s027"; depends=[dplyr ggplot2 ggrepel lazyeval magrittr purrr rlang seriation tibble tidyr]; }; corrsieve = derive2 { name="corrsieve"; version="1.6-8"; sha256="0ak3j9khcwv5rxbicck2sr260wpmd3xj254y7pdavx2fk0b72yxs"; depends=[]; }; corset = derive2 { name="corset"; version="0.1-4"; sha256="0ladyqvkys4cldvbhkii9jwn1k5p1ym2g5bgdlz1hq1sv30ixn2f"; depends=[]; }; cosa = derive2 { name="cosa"; version="1.2.0"; sha256="1g2n9l79bi6pr5m9f4c0byw2ls9nhykkaaivssxbx4m6qpqlqg54"; depends=[nloptr]; }; cosinor = derive2 { name="cosinor"; version="1.1"; sha256="02nnqg51vq48lzk667cyarnmhcf5mifnsdij7dlgqvz2k4fdq4pl"; depends=[ggplot2 shiny]; }; - cosinor2 = derive2 { name="cosinor2"; version="0.1.0"; sha256="0pxkkp8dxhzqp2v3pfzigh1ka7ardf168k5p41z289xgar9p33g0"; depends=[cosinor ggplot2 Hmisc matrixStats]; }; + cosinor2 = derive2 { name="cosinor2"; version="0.2.1"; sha256="1pp0z86fflqkkllfrzx3vj98kzxjwnawr4a2d8z5q6zhq6v5qrvf"; depends=[cosinor cowplot ggplot2 Hmisc magrittr matrixStats purrr scales stringr]; }; cosmoFns = derive2 { name="cosmoFns"; version="1.0-1"; sha256="0a6xhbgxxnymlvicg99yhgny2lscxcbmvqmy17kxmahdi797dsg6"; depends=[]; }; cosso = derive2 { name="cosso"; version="2.1-1"; sha256="1wyq27qak0kz4bbzynm24r5ksvb6ddd43h2ykh6m935xck16blyb"; depends=[glmnet quadprog Rglpk]; }; costat = derive2 { name="costat"; version="2.4"; sha256="0c47bklqjgjmdglw3mi9lvygwjr5w6i1zv91ll3vpnl5dnay0692"; depends=[wavethresh]; }; cotrend = derive2 { name="cotrend"; version="1.0.1"; sha256="14yzfq5a3wi26gn45mp2zm2yn6gic90csk9by66m08fgpzznz4dq"; depends=[xts]; }; couchDB = derive2 { name="couchDB"; version="1.4.1"; sha256="1n99amvnsjp88y091603hjsvp243c5i6dbrsvdjfmzgj5dsrv70m"; depends=[bitops httr RCurl rjson]; }; - countrycode = derive2 { name="countrycode"; version="1.00.0"; sha256="1b2ijbf74bxvi01f53lbb2b9jya2rlyazvzacxpj79y1dbs600s6"; depends=[]; }; + countgmifs = derive2 { name="countgmifs"; version="0.0.1"; sha256="19d8xr7ipqp16w46c3mrg15jfcvpj7n4pds8zw6mgw4g81bcxamf"; depends=[MASS]; }; + countrycode = derive2 { name="countrycode"; version="1.1.0"; sha256="1pmv2jxr1ydgv8r5n20s5z80hdmzgvhm4cxdqhbkf7nfyipwl8xl"; depends=[]; }; countyfloods = derive2 { name="countyfloods"; version="0.1.0"; sha256="0ld8p8dfk9khvwffbn8sad0j3an25s7cvbi6jxljgx4zc6ldh699"; depends=[dataRetrieval dplyr ggplot2 lubridate maps plyr R_utils tidyr]; }; countytimezones = derive2 { name="countytimezones"; version="1.0.0"; sha256="0sk22fmz9d3wvlfvjl1xdavvl04q1ywy8ww2gi5am3yiizkf0v9w"; depends=[dplyr lubridate]; }; countyweather = derive2 { name="countyweather"; version="0.1.0"; sha256="0q56bnh9x6jyj1sdd1q4yv2n774mbv268pgp285bjybgqm2pyisz"; depends=[dplyr geosphere ggmap ggplot2 lubridate purrr raster rnoaa sp stringi tibble tidyr tigris]; }; @@ -5370,18 +5602,18 @@ in with self; { covLCA = derive2 { name="covLCA"; version="1.0"; sha256="15jsjrlaws1cqyrwvh4lzbhxkb11jmgpmddg98nfrzmjpczn2iw3"; depends=[Matrix mlogit poLCA]; }; covRobust = derive2 { name="covRobust"; version="1.1-3"; sha256="0zcfala4l0j4w0sx5hlw40vxiypans3d7pgkxy25nj0d2m1jkvba"; depends=[]; }; covTest = derive2 { name="covTest"; version="1.02"; sha256="0p4di8bdjghsq5jd678dprlhiwnxr5piqlx2z7hi2bjjpvvl5657"; depends=[glmnet glmpath lars MASS]; }; - covTestR = derive2 { name="covTestR"; version="0.1.3"; sha256="13sjnc3yrh2hzdcnnh6sfzl8gqilarg79n0sjr8vqyvclmz686k0"; depends=[dplyr lazyeval Rcpp RcppArmadillo]; }; - covafillr = derive2 { name="covafillr"; version="0.4.2"; sha256="00790rgpdxxwc48cw0w5savvmvi8ljmyrh6w3f8qzx6pq1s982gm"; depends=[ggplot2 RcppEigen]; }; - covatest = derive2 { name="covatest"; version="1.0.0"; sha256="0g4wfwxngvcssi2bmmb2q5fv909z9qm4wfc8gcldz7fckbsc0k10"; depends=[gstat matrixcalc sp spacetime]; }; + covTestR = derive2 { name="covTestR"; version="0.1.4"; sha256="0j9kay8lwkhpdyg0fbfars1m58v0i58v1v5sm7m72s7kz8qh2yfs"; depends=[purrr Rcpp RcppArmadillo rlang]; }; + covafillr = derive2 { name="covafillr"; version="0.4.3"; sha256="0mqq4hm3nhzrvdai9blb0ycgm6j5klfd8y4ib5pl99plffs6r7pl"; depends=[RcppEigen]; }; + covatest = derive2 { name="covatest"; version="1.0.1"; sha256="01dn2jbfiy7fwlm6zg44cvb2475kaa4l8snl1xara3qp0xiikhvr"; depends=[gstat matrixcalc sp spacetime]; }; covequal = derive2 { name="covequal"; version="0.1.0"; sha256="1qj6djqf1rnjmnaz1nryj9dc104082w258dzjjp5q18gg1ck8v0c"; depends=[corpcor RMTstat]; }; covfefe = derive2 { name="covfefe"; version="0.1.0"; sha256="178qc77y4bn04qad3g70wr8y4v0ggyg807w67m8wvhbcxqr8yq7c"; depends=[tokenizers]; }; - covr = derive2 { name="covr"; version="3.1.0"; sha256="0ml7hpnwn0b4rgk0qx0pchz1m5b57issbvhl708lnb0bplvf00f7"; depends=[crayon digest httr jsonlite rex withr]; }; + covr = derive2 { name="covr"; version="3.2.1"; sha256="187hvqp7mvxy3hl00fgw56sm93yrz81fwixf652arr0ih2jdm47a"; depends=[crayon digest httr jsonlite rex withr]; }; covreg = derive2 { name="covreg"; version="1.0"; sha256="0v19yhknklmgl58zhvg4szznb374cdh65i7s8pcj2nwrarycwzaq"; depends=[]; }; covsep = derive2 { name="covsep"; version="1.1.0"; sha256="19dvwhl85yx9ddwxvnq5sdd534s6llcw61gckrav48hq49x1bqld"; depends=[mvtnorm]; }; cowbell = derive2 { name="cowbell"; version="0.1.0"; sha256="1zz0g30zvqfk5lh09y90iq3s7x2wwbs852i3d56mfp926gxdxc2y"; depends=[ggplot2 misc3d rgl]; }; - cowplot = derive2 { name="cowplot"; version="0.9.2"; sha256="13yjw7yv7imyqiawqqp304hkp6x36iv6rf6gn03dwzwkj9zwx4lb"; depends=[ggplot2 gtable plyr scales]; }; - cowsay = derive2 { name="cowsay"; version="0.6.0"; sha256="15kiiqbh8bqdifbjh6ab9r595j2a4zyk4mgmy1w39sja1g95nlvi"; depends=[fortunes rmsfact]; }; - coxed = derive2 { name="coxed"; version="0.1.1"; sha256="1fk9vcrad8p2xdm1q7wcrd2fk9b59cfs3lvfxi8arkmmbz7pxrmq"; depends=[dplyr ggplot2 gridExtra mgcv PermAlgo rms survival tidyr]; }; + cowplot = derive2 { name="cowplot"; version="0.9.3"; sha256="1jrx1h0blkk577y4cvnjk7xccn7qmjiv2bnpgqlsjvjhsxglf41y"; depends=[ggplot2 gtable plyr scales]; }; + cowsay = derive2 { name="cowsay"; version="0.7.0"; sha256="1f5hc1sj79yd3l2c6vrcj6xx2hdfxb16c3d2sgr7yps8j5fyrb9h"; depends=[crayon fortunes rmsfact]; }; + coxed = derive2 { name="coxed"; version="0.2.0"; sha256="0idr6ic8nsw6f210swvpfzbaf05blg4x6kh6mb7q773qirmwi0rs"; depends=[dplyr ggplot2 gridExtra mgcv PermAlgo rms survival tidyr]; }; coxinterval = derive2 { name="coxinterval"; version="1.2"; sha256="0vb7vmzbb2dsihx04jbp2yvzcr033g435mywmwimqhfqdrmjx3fi"; depends=[Matrix survival timereg]; }; coxme = derive2 { name="coxme"; version="2.2-10"; sha256="12p41qc3ryxdcw2zljgvw2gk1wl1pj7h61naqbyc1h0l3dqy8dg2"; depends=[bdsmatrix Matrix nlme survival]; }; coxphMIC = derive2 { name="coxphMIC"; version="0.1.0"; sha256="0lmma5wzcczr762xqa4yamvwvyviqxk8gdrps3sydg3n14hckp6d"; depends=[numDeriv survival]; }; @@ -5389,6 +5621,7 @@ in with self; { coxphf = derive2 { name="coxphf"; version="1.13"; sha256="16bman8xv5xx7gg8s54sj3hc4isqxk4h3q93h4q3h3j0bdvww2yy"; depends=[survival]; }; coxphw = derive2 { name="coxphw"; version="4.0.1"; sha256="116dp6zispa8k7y6jrn4v9ipf0jqdhj68w9qqc2qwcapawvrd0nh"; depends=[survival]; }; coxrobust = derive2 { name="coxrobust"; version="1.0"; sha256="08hp0fz5gfxgs3ipglj6qfr6v63kzxkrzg650bmzabq8dvrxd97q"; depends=[survival]; }; + coxrt = derive2 { name="coxrt"; version="1.0.0"; sha256="1nyc4qpgxyji314w372rg7dhiq6bmzfjbgi035m350s81fp6y8br"; depends=[BB ggplot2 gss inline Rcpp RcppArmadillo survival]; }; coxsei = derive2 { name="coxsei"; version="0.1"; sha256="1agr0gmyy1f2x6yspj04skgpi1drpbc1fcbwhhhjsz1j6c64xagy"; depends=[]; }; cp4p = derive2 { name="cp4p"; version="0.3.5"; sha256="16pkl0brm415v153ln41nyy13fsp4i0jy8349lsffkv5mvp7vklc"; depends=[limma MESS multtest qvalue]; }; cpa = derive2 { name="cpa"; version="1.0"; sha256="14kcxayw4cdbjfa6bvfzqp8flwc0sr3hmh2dnr1dfax0hnccd71m"; depends=[]; }; @@ -5412,35 +5645,40 @@ in with self; { cranlogs = derive2 { name="cranlogs"; version="2.1.0"; sha256="1w1nbifjb9l106fk97zy0w73x73bw5azq89l3c1b8r2fz8aljkkc"; depends=[httr jsonlite]; }; cranly = derive2 { name="cranly"; version="0.2"; sha256="0h6yfj805kbprgj28x43iz6lcjsv39vxdf33j9gg2gnmgr5zja67"; depends=[colorspace countrycode ggplot2 igraph magrittr stringr visNetwork]; }; crantastic = derive2 { name="crantastic"; version="0.1"; sha256="0y2w9g100llnyw2qwjrib17k2r2q9yws77mf6999c93r8ygzn4f5"; depends=[]; }; - crawl = derive2 { name="crawl"; version="2.1.1"; sha256="0dr9z8y8rvc3wn1gjb6mh5wmszng9j1r2a9ks6p5am8ghf754sps"; depends=[dplyr gdistance mvtnorm raster Rcpp RcppArmadillo shiny sp]; }; + crawl = derive2 { name="crawl"; version="2.2.1"; sha256="18mr7vp72jj5msj9mbq45jy3f6qhn45azsmkq07i2d30gwdj0c3a"; depends=[dplyr gdistance lubridate magrittr mvtnorm purrr raster Rcpp RcppArmadillo rmapshaper sf shiny sp tibble]; }; crayon = derive2 { name="crayon"; version="1.3.4"; sha256="0s7s6vc3ww8pzanpjisym4jjvwcc5pi2qg8srx7jqlz9j3wrnvpw"; depends=[]; }; crblocks = derive2 { name="crblocks"; version="0.9-1"; sha256="1m6yy6jb1dld7m9jaasms5ps8sn3v039jvlk8b0c08hmm7y0rm3z"; depends=[]; }; crch = derive2 { name="crch"; version="1.0-1"; sha256="0h97vr9sy7hncjxv5v3y79pw2qqzpx6z6nqgx6k2ics1lf9misyb"; depends=[Formula ordinal sandwich scoringRules]; }; creditr = derive2 { name="creditr"; version="0.6.1"; sha256="1dhjl99gjc97bdsdg29mq6xifivjn9kr0y7m2jzvrzb26x856z97"; depends=[devtools quantmod Rcpp RCurl XML xts zoo]; }; credsubs = derive2 { name="credsubs"; version="1.0"; sha256="12bs1whk23y41hxa976j30d31x81rmxapz9ll5y2hi5c1h4fypn4"; depends=[]; }; credule = derive2 { name="credule"; version="0.1.3"; sha256="1vciqkxkf93z067plipvhbks9k9sfqink5rhifzbnwc2c5gxp5mx"; depends=[]; }; + cregg = derive2 { name="cregg"; version="0.3.0"; sha256="08dhn4i5i27zw3ayqp7lkw5z8dzckv8fhflpvz0mphax34pm3z72"; depends=[ggplot2 ggstance lmtest sandwich scales survey]; }; + crfsuite = derive2 { name="crfsuite"; version="0.2"; sha256="10d7gahqqc6g6l99n6g5r49hlngdl3k9jz9j2c4x9hx1r8f8gql6"; depends=[data_table Rcpp]; }; cricketr = derive2 { name="cricketr"; version="0.0.15"; sha256="0jf9a8kfhzydmspmgh2mxb18q4adbjm3jiz3brxpl42d64agq7qj"; depends=[dplyr forecast ggplot2 lubridate plotrix scatterplot3d XML]; }; crimCV = derive2 { name="crimCV"; version="0.9.6"; sha256="14ckk88i7jk8a7kl51d7qfdis44jng6zz9zd72cdp80a57dvrvzq"; depends=[]; }; + crimedata = derive2 { name="crimedata"; version="0.1.0"; sha256="006wz4nvfq10dppkg8kqp2bmllcc7zpwdqkp3nqwm4qgw7pllyvz"; depends=[digest dplyr httr magrittr purrr readr stringr tibble]; }; crimelinkage = derive2 { name="crimelinkage"; version="0.0.4"; sha256="1zzk50kyccvnp51vzp28c9yi23hsp25arrgdn88lwfwa0m43rlar"; depends=[geosphere igraph]; }; crisp = derive2 { name="crisp"; version="1.0.0"; sha256="1gs8jnd9y9pd55w6kwv9mvmg3wd8hjiw3lwx7k242pxccsxklfxq"; depends=[MASS Matrix]; }; crmPack = derive2 { name="crmPack"; version="0.2.7"; sha256="1d0ydllcbykwip9dw3arvn6lv4h88n5nkm3ms122gfrf44f6h2c0"; depends=[GenSA ggplot2 gridExtra MASS mvtnorm rjags]; }; - crminer = derive2 { name="crminer"; version="0.1.4"; sha256="1vnl01q5sw13g6qhvn61w9i40zpg9cszisgi0h8d6q6rr23iws9w"; depends=[crul hoardr jsonlite pdftools xml2]; }; + crminer = derive2 { name="crminer"; version="0.2.0"; sha256="1rlh7bxk8bry2v9fnqzy0ph62dda1pzifksr7v4pmdyhji9mjw33"; depends=[crul hoardr jsonlite pdftools xml2]; }; crmn = derive2 { name="crmn"; version="0.0.20"; sha256="1kl1k1s2gm63f9768cg8w4j6y1gq4hws3i7hdfhj7k9015s0a25p"; depends=[Biobase pcaMethods]; }; crn = derive2 { name="crn"; version="1.1"; sha256="1fw0cwx478bs6hxidisykz444jj5g136zld1i8cv859lf44fvx2d"; depends=[chron RCurl]; }; - crochet = derive2 { name="crochet"; version="2.0.1"; sha256="1il29hnnx3kwjvsnirvm5vxdd04x94qn4526411cw0syyqqlbnp8"; depends=[]; }; + crochet = derive2 { name="crochet"; version="2.1.0"; sha256="0bfhgkbyrm836wjshlv1gxkc7m84sij6i3zrg95q4fmqzspwqnq0"; depends=[]; }; + cromwellDashboard = derive2 { name="cromwellDashboard"; version="0.5.1"; sha256="0d57c1wdd1ds9fr7p256la63qbv8mirljgrvl1k8fp5gcnkps5wb"; depends=[dplyr DT httr shiny shinydashboard stringr]; }; cronR = derive2 { name="cronR"; version="0.4.0"; sha256="0ydlwhlzb57vbr8ya6hdsw2mhsjkb01jspn0jw081anrxfy5m2jw"; depends=[digest]; }; crop = derive2 { name="crop"; version="0.0-2"; sha256="1yjpk7584wrz9hjqs21irjnrlnahjg8lajra9yfdp6r927iimg1l"; depends=[]; }; cropdatape = derive2 { name="cropdatape"; version="1.0.0"; sha256="19bn0apx4p8hnz388zg7sq59qv89vv8k5php317kcv7ai2k2gh34"; depends=[]; }; crossReg = derive2 { name="crossReg"; version="1.0"; sha256="1866jhfnksv9rk89vw7w4gaxi76bxfjvqxx7cfa8nlrcsmaqd7rf"; depends=[]; }; crossdes = derive2 { name="crossdes"; version="1.1-1"; sha256="1d7lv3ibq1rwxx8kc3ia6l9dbz2dxdd5pnf2vhhjmwm448iamcfd"; depends=[AlgDesign gtools]; }; crossmatch = derive2 { name="crossmatch"; version="1.3-1"; sha256="082lrv2129mfhwlh99z3g8id3a29s8854skl152bl3ig8pk2gbjz"; depends=[nbpMatching survival]; }; + crossrun = derive2 { name="crossrun"; version="0.1.0"; sha256="0br57nraqhs5f1cpidc8kd31izm82wvhiw9pxcdj9v51l9vifbmx"; depends=[Rmpfr]; }; crosstalk = derive2 { name="crosstalk"; version="1.0.0"; sha256="0lfa89vhrzi7a1rghmygcjr8gzddw35sinb3jx6g49mc9jias7mk"; depends=[ggplot2 htmltools jsonlite lazyeval R6 shiny]; }; crossval = derive2 { name="crossval"; version="1.0.3"; sha256="0acpcisg6pkxblyc4j9hiri58h1rn7ay43p5ib5ia8a4a8bnfa4p"; depends=[]; }; crosswalkr = derive2 { name="crosswalkr"; version="0.1.1"; sha256="0yk5yxxsd1alfbfjg5bzjc5b07jfj5s551bzrv3dg57hxnqw9b2z"; depends=[dplyr haven labelled readr readxl tibble]; }; crossword_r = derive2 { name="crossword.r"; version="0.3.5"; sha256="1h6r5rrmla3jsdfnkxsv4drvp3nrkqkygqv9ak0pn37zlbms99z9"; depends=[dplyr jsonlite magrittr R6 r6extended stringr]; }; crp_CSFP = derive2 { name="crp.CSFP"; version="2.0.2"; sha256="0gazmhf5bv994x441m2xm0w18h9lw3y68qzdf6gmyqimj4wjqjgf"; depends=[MASS]; }; crplyr = derive2 { name="crplyr"; version="0.2.0"; sha256="14j0cn3ci6vbmimcinzp25ym0h264405jn8gw7w0gk3rcamgh50s"; depends=[crunch dplyr lazyeval purrr rlang stringr tibble]; }; - crqa = derive2 { name="crqa"; version="1.0.7"; sha256="008dmrgsajm73r3fl3lqsd4pgkdacpx6m48xg61yc02xciv7ad2b"; depends=[fields Matrix plot3D pracma tseriesChaos]; }; + crqa = derive2 { name="crqa"; version="1.0.9"; sha256="1k6jgkmgbjab78dynng1hlxdbnqrpwmiiw54rgyfhx6v3lcir75d"; depends=[fields Matrix plot3D pracma tseriesChaos]; }; crqanlp = derive2 { name="crqanlp"; version="0.3"; sha256="1ndd5k44w232x6k564r84lyahljgcnldfwgih3iiar3il94drbdg"; depends=[corpus crqa gutenbergr RCurl tm]; }; crrSC = derive2 { name="crrSC"; version="1.1"; sha256="171cw56q2yv1vb4qd0va75i2q89jcw1126q8pcbv0235g7p2a86z"; depends=[survival]; }; crrp = derive2 { name="crrp"; version="1.0"; sha256="1fq54jr6avrli91a4z1hp5img4kghyw1yvjr5xyccsanf9i35x8r"; depends=[cmprsk Matrix survival]; }; @@ -5450,11 +5688,11 @@ in with self; { crsnls = derive2 { name="crsnls"; version="0.2"; sha256="0rv0xrdl9ix6bhaf554gma8zf923w47f8j1dkbs8g6xjqjr1c40a"; depends=[]; }; crsra = derive2 { name="crsra"; version="0.2.3"; sha256="1rkqm88zmvp9gw442cby6qpvfw4pfw65wz0gyl2h37w87c3wwvrw"; depends=[digest dplyr knitr purrr rcorpora readr tibble tidytext]; }; crtests = derive2 { name="crtests"; version="0.2.1"; sha256="0z8idz37dgwvi1q2vryldii7fn9yxd32gds77ml76jfplxbkikpd"; depends=[caret plyr stringr]; }; - crul = derive2 { name="crul"; version="0.5.2"; sha256="0sfjv8jrb5x85b4dicp7789xxa0g6y89sfd96war84yidmh2a6z0"; depends=[curl httpcode mime R6 urltools]; }; - crunch = derive2 { name="crunch"; version="1.23.0"; sha256="0mcq4qnhn3gadq2ssglvh5wid0a0clkxza3zikxrxwa69vjp7x3q"; depends=[crayon curl httpcache httr jsonlite]; }; + crul = derive2 { name="crul"; version="0.6.0"; sha256="1vnir41mqah8ib9p2p4ij54bpv54baa1q9ad5j2a7hn59vwpjhh0"; depends=[curl httpcode mime R6 urltools]; }; + crunch = derive2 { name="crunch"; version="1.24.0"; sha256="0jydmicc4c4vkf6r3krybbrdf96059nx6q611lyd2qj32irlr49j"; depends=[crayon curl httpcache httr jsonlite]; }; crunchy = derive2 { name="crunchy"; version="0.2.0"; sha256="1q9mqpkg5ljb798922fmvjjp36kyjr1rrm6jf3s2fwjrhq186y3z"; depends=[crunch shiny]; }; - cruts = derive2 { name="cruts"; version="0.4"; sha256="0flhlv9pabmj667azc7vjacmk4d512s34xlrip176s8cmswprzg1"; depends=[lubridate ncdf4 raster sp stringr]; }; - crypto = derive2 { name="crypto"; version="1.0.2"; sha256="16k08kbn8lr3ycf61imc3fd0vdm2w1rzzn11c6vv7s8kfwvdcfdl"; depends=[curl doSNOW dplyr foreach jsonlite lubridate magrittr rvest tidyr xml2 xts yaml]; }; + cruts = derive2 { name="cruts"; version="0.5"; sha256="08mklbmwgaq6cf3hd40mingplwjss5im30l5j6nmy7lijp15nq7k"; depends=[lubridate ncdf4 raster sp stringr]; }; + crypto = derive2 { name="crypto"; version="1.0.3"; sha256="19d245sq8xhxmq252cjcymc86n6q6yq2b1liy2mm62agkyjxznrd"; depends=[curl doSNOW dplyr foreach jsonlite lubridate magrittr rvest tibble tidyr xml2 xts yaml]; }; cryst = derive2 { name="cryst"; version="0.1.0"; sha256="04da19dy3mkngd3ma44cd8cdkb5acjy9lbhfipa9flp339j1pp57"; depends=[flux pracma]; }; csSAM = derive2 { name="csSAM"; version="1.2.4"; sha256="1ms8w4v5m9cxs9amqyljc2hr1178cz6pbhmv7iiq9yj1ijnl4r1x"; depends=[]; }; csabounds = derive2 { name="csabounds"; version="1.0.0"; sha256="15l7i15w5jk4h3148dlk8v2i4awns5vxvv6m59qcv0hzns6jhx9j"; depends=[BMisc ggplot2 pbapply progress qte]; }; @@ -5468,18 +5706,19 @@ in with self; { cstar = derive2 { name="cstar"; version="1.0"; sha256="1zws4cq5d37hqdxdk86g85p2wwihbqnkdsg48vx66sgffsf1fgxd"; depends=[]; }; csv = derive2 { name="csv"; version="0.5.2"; sha256="1gwib79fysmiwaw48ghsygyqgc00j5zwy7lfgcziw1kp6nxkdk19"; depends=[]; }; csvread = derive2 { name="csvread"; version="1.2"; sha256="1zx43g4f4kr7jcmiplzjqk2nw1g5kmmfap85wk88phf6fp0w8l5p"; depends=[]; }; - csvy = derive2 { name="csvy"; version="0.1.3"; sha256="0vszbxqa88sdsi73wng4y8zxhrvcksqa6qs3rbh50c2nll8r8kb3"; depends=[yaml]; }; + csvy = derive2 { name="csvy"; version="0.3.0"; sha256="0id015szw1c63vd1h0515jsqdhyn32sxpxm89f3sb1qkgq3yynmy"; depends=[data_table jsonlite yaml]; }; cthreshER = derive2 { name="cthreshER"; version="1.1.0"; sha256="18b66d08dq8pvnixmm4ir4r800b37z5yillaa88l317mdilbci9s"; depends=[Matrix]; }; - ctl = derive2 { name="ctl"; version="1.0.0-0"; sha256="12hrrql9wz43s1d3sfyzlqzx7ajrl3hvf96776ik6icbm8by8h6j"; depends=[MASS qtl]; }; - ctmcd = derive2 { name="ctmcd"; version="1.3.5"; sha256="0nsazcfa8bg5r2ki5wf4v6q2ws47wk97zr4a5h9jj0mp1900rz2l"; depends=[coda expm numDeriv Rcpp RcppArmadillo]; }; + ctl = derive2 { name="ctl"; version="1.0.0-2"; sha256="1gpb43zn411l476dby2g38qkcvh2fsdcvbkr9jb274l1154km1xm"; depends=[MASS qtl]; }; + ctmcd = derive2 { name="ctmcd"; version="1.4.0"; sha256="1b4bf2j3gdzm417pimn9m365y7x11ddinq9mb5mixwsbf77dqagm"; depends=[coda expm numDeriv Rcpp RcppArmadillo]; }; ctmcmove = derive2 { name="ctmcmove"; version="1.2.9"; sha256="1pxyxbbhfa8arqfb7qw10ya1b8hy9ylqbqqzys6d9dsixvdk98h0"; depends=[fda gdistance Matrix raster sp]; }; ctmle = derive2 { name="ctmle"; version="0.1.1"; sha256="1k9nr2xbaqrbpp31vdcnmpwyazcw79k0r3gbcbinva4pgv2psp29"; depends=[glmnet SuperLearner tmle]; }; - ctmm = derive2 { name="ctmm"; version="0.5.0"; sha256="1lz07gsly4acdwmv62l01g3rmmjwkiww8hsxlbx0cp0jmk63znn1"; depends=[data_table expm fasttime Gmedian manipulate MASS Matrix numDeriv pbivnorm pracma raster rgdal scales shape]; }; + ctmm = derive2 { name="ctmm"; version="0.5.2"; sha256="1x8nzmhdby0nwm18l6b3y4x4b7pihfkpnhakykh23rfnr7d6ajj3"; depends=[data_table expm fasttime Gmedian manipulate MASS numDeriv pbivnorm pracma raster rgdal scales shape]; }; ctqr = derive2 { name="ctqr"; version="1.0"; sha256="1q4icv8qicgwr664cbrmkh2x9xmlrc80yvz8gnaqh86248kn4yp3"; depends=[pch survival]; }; + ctrlGene = derive2 { name="ctrlGene"; version="1.0.0"; sha256="0gz2js2n990sfwxwigp4dxqcf94f9bzcinyzjign5yvyr53fakvk"; depends=[psych]; }; cts = derive2 { name="cts"; version="1.0-21"; sha256="0wagxqb8msjc8z33qp7sc92l53f56d9bzz9160bmgpjxlj6cnqcj"; depends=[]; }; ctsem = derive2 { name="ctsem"; version="2.6.5"; sha256="0dk1q18sd4s5ynxq8sdhxc7p35qqc6z87d001pykbr0kzszyf9c2"; depends=[BH corrplot MASS Matrix mvtnorm OpenMx plyr Rcpp RcppEigen rstan rstantools shiny StanHeaders]; }; ctv = derive2 { name="ctv"; version="0.8-5"; sha256="0kl6z8dbbjgm29q0c5xy6lihjgf5cdihrllm27x0zbcvy8lyl51p"; depends=[]; }; - cubature = derive2 { name="cubature"; version="1.4"; sha256="1hd23b8v2kpqp5gr0va8p2q7j8w9rik6ks7zrr4b8mb2mwrakk74"; depends=[Rcpp]; }; + cubature = derive2 { name="cubature"; version="1.4-1"; sha256="10jl5l3xnigiq95829ssq69xbim97k851187dghc30awszcx4clh"; depends=[Rcpp]; }; cubfits = derive2 { name="cubfits"; version="0.1-3"; sha256="0i2iybm9vpyqnahzka66yms1namdd36bz1i1yjy74qsc1h995rga"; depends=[coda foreach]; }; cubing = derive2 { name="cubing"; version="1.0-5"; sha256="1q23fplvklaaldicqic0zpnh301m08zb9k21l47zj47g9m9pj4bc"; depends=[rgl]; }; cudaBayesreg = derive2 { name="cudaBayesreg"; version="0.3-16"; sha256="1xsamdsg4cq7l5r7czkg70j5gypf1dak3h353xfbz3rq0r0dni19"; depends=[cudaBayesregData oro_nifti]; }; @@ -5495,45 +5734,49 @@ in with self; { curvHDR = derive2 { name="curvHDR"; version="1.2-0"; sha256="185097ikqhmqqc4ha7l74inx5cmg1bhgw3cw40wk0ngc4wv4sfqi"; depends=[feature geometry hdrcde KernSmooth ks misc3d ptinpoly rgl]; }; curvecomp = derive2 { name="curvecomp"; version="0.1.0"; sha256="0ykgbwnh32w61cjcg1nyqak42hx0jrsrpbra2wh3pgj9clg1qad2"; depends=[multcomp]; }; cusp = derive2 { name="cusp"; version="2.3.3"; sha256="130m0is48bp11p5fpg17lwqwlavsa8fzfxjs0z62vl6lm006aahw"; depends=[]; }; + customLayout = derive2 { name="customLayout"; version="0.2.0"; sha256="0mr5s6arjm97bdgr6r8w1d33spiwnqw4spbl7smivpw7h8asi94m"; depends=[flextable gridExtra officer RColorBrewer]; }; customizedTraining = derive2 { name="customizedTraining"; version="1.1"; sha256="0rlfsnhmmcwx7iyjavj03v4kdfzxcqjggi8qpgmi6lkli3n0s6pg"; depends=[FNN glmnet]; }; cutoffR = derive2 { name="cutoffR"; version="1.0"; sha256="1801jylmpp4msyf07rhg4153kky1zvi4v0kkjb9d51dc7zkhh531"; depends=[ggplot2 reshape2]; }; - cutpointr = derive2 { name="cutpointr"; version="0.7.3"; sha256="09pcja8kp3sdsz2vp32s5vl7m5cz14rlbp9aa00y4qd21nyckyj9"; depends=[dplyr foreach ggplot2 gridExtra purrr Rcpp rlang tibble tidyr]; }; + cutpointr = derive2 { name="cutpointr"; version="0.7.4"; sha256="0d9g0xrypfh382zpil16yh65bl3rlygj7vgzkqblwad8ladbd27s"; depends=[dplyr foreach ggplot2 gridExtra purrr Rcpp rlang tibble tidyr]; }; cuttlefish_model = derive2 { name="cuttlefish.model"; version="1.0"; sha256="1rmkfyfd1323g2ymd5gi1aksp160cwy5ha5cjqh5r6fzd8hhqjxs"; depends=[]; }; cvAUC = derive2 { name="cvAUC"; version="1.1.0"; sha256="13bk97l5nn97h85iz93zxazhr63n21nwyrpnl856as9qp59yvn64"; depends=[data_table ROCR]; }; cvTools = derive2 { name="cvTools"; version="0.3.2"; sha256="0b7xb6dmhqbvz32zyfbdvm9zjyc59snic6wp1r21ina48hchn3sj"; depends=[lattice robustbase]; }; - cvar = derive2 { name="cvar"; version="0.1-1"; sha256="0aqv42wbhdql1v0mxspr5ms2mwkk6yw0snzzjg5qg682m5f13ghn"; depends=[gbutils Rdpack]; }; + cvar = derive2 { name="cvar"; version="0.3-0"; sha256="164k8b40w1npbq3r9i6n9m0hkia3wavsid88zyc63j56lxxk8zmm"; depends=[fGarch gbutils Rdpack]; }; cvcrand = derive2 { name="cvcrand"; version="0.0.2"; sha256="1gclzn6qqjylxg3v263x5cfg1wjkqviqb3fzzb7w0ckpld2his0v"; depends=[tableone]; }; cvequality = derive2 { name="cvequality"; version="0.1.3"; sha256="19mpf2vjj2hfgdr3mx5y1i0ldb0byvv2ii7lyanhc6c2a3mirs38"; depends=[]; }; cvq2 = derive2 { name="cvq2"; version="1.2.0"; sha256="19k95xg2y3wd4mx3wvbrc1invybd446g13vsp3dv05nw2kx4f6w8"; depends=[]; }; cvxbiclustr = derive2 { name="cvxbiclustr"; version="0.0.1"; sha256="00k75zy8v6qd5fg0h258i5z8ljjkfgkxz45cspysl1ap89d5n7df"; depends=[igraph Matrix]; }; cvxclustr = derive2 { name="cvxclustr"; version="1.1.1"; sha256="0idmx4wgz4d0b1xzmlq5bsk2f2q38lpf9c117hg97xsfndzn7vqj"; depends=[igraph Matrix]; }; - cwhmisc = derive2 { name="cwhmisc"; version="6.5"; sha256="1nakiyamg05r7xysac5b1y0ddq6s25v6ygsrb487b5jcv0d95g2n"; depends=[lattice]; }; + cwhmisc = derive2 { name="cwhmisc"; version="6.6"; sha256="1pf365g4f51cfrhlff9mqw2ddvkps0abax17zcn3vw1ba2djalnp"; depends=[lattice]; }; cwm = derive2 { name="cwm"; version="0.0.3"; sha256="1ln2l12whjhc2gx38hkf3xx26w5vz7m377kv67irh6rrywqqsyxn"; depends=[MASS matlab permute]; }; + cxhull = derive2 { name="cxhull"; version="0.1.1"; sha256="0ihvgliwssf5jprb7f842vsck1d5x657c43pb6wi03y4wdz2r0s5"; depends=[]; }; cxxfunplus = derive2 { name="cxxfunplus"; version="1.0"; sha256="0kyy5shgkn7wikjdqrxlbpfl3zkkv4v1p8a1vv0xkncwarjs4n8d"; depends=[inline]; }; cycleRtools = derive2 { name="cycleRtools"; version="1.1.1"; sha256="1l7w2lm4s149ndd85v41pkdrdig6l3nmhl14bdx56aw8q57fxmb0"; depends=[Rcpp xml2]; }; cyclestreets = derive2 { name="cyclestreets"; version="0.1.5"; sha256="1wvg43wrnh0lz2pkkrbidzdsrkypdl2r4ccs9jhdsj8ixm158dvf"; depends=[httr jsonlite magrittr sf stringr]; }; cyclocomp = derive2 { name="cyclocomp"; version="1.1.0"; sha256="0gky3svk02wiajw7nfjh30684h3qxili4bvsab0m7b6cggw6bgyd"; depends=[callr crayon desc remotes withr]; }; cycloids = derive2 { name="cycloids"; version="1.0"; sha256="00pdxny11mhfi8hf76bfyhd1d53557wcbl2bqwjzlpw5x3vdnsan"; depends=[]; }; - cymruservices = derive2 { name="cymruservices"; version="0.2.0"; sha256="1pgk9llaz0glhgf3n60nq3xb8kp4jkk8paz4scxff3whyksxv4yn"; depends=[purrr stringr]; }; + cymruservices = derive2 { name="cymruservices"; version="0.5.0"; sha256="1xhdvijybdy7312qdbp50881yix587pmym0hchnwb3h0vhjv553v"; depends=[memoise pingr stringi]; }; cyphid = derive2 { name="cyphid"; version="1.1"; sha256="0ya9w8aw27n0mvvjvni4hxsr4xc8dd08pjxx7zkfl1ynfn5b08am"; depends=[fda]; }; cystiSim = derive2 { name="cystiSim"; version="0.1.0"; sha256="0pz8jxi4lgcwzrb4dh8xn63xhpaga5rzg5hwqicwv8isc16iqizd"; depends=[ggplot2 knitr magrittr]; }; cytoDiv = derive2 { name="cytoDiv"; version="0.5-3"; sha256="00c0gqgypywgbhavb15bvj6ijrk4b5zk86w85n9kwr4069b7jvwc"; depends=[GenKern plotrix]; }; - cytometree = derive2 { name="cytometree"; version="1.1.1"; sha256="1v90dp2bk06iv7im6r3rgj442ajxyy0h05h1higrjyw6k2v78dmd"; depends=[ggplot2 igraph mclust Rcpp RcppArmadillo]; }; + cytofan = derive2 { name="cytofan"; version="0.1.0"; sha256="0gqs98mnwiawnyfb9hs5nlin8d1fj64bszn4b40gs8ajyh36r9pp"; depends=[ggplot2 RColorBrewer]; }; + cytometree = derive2 { name="cytometree"; version="1.2.0"; sha256="1919f9d7phgnf1z5srgjj4h4pgl9hrv9rx75rifj819zv2s9hfig"; depends=[cowplot ggplot2 igraph mclust RColorBrewer Rcpp RcppArmadillo robustbase]; }; cytominer = derive2 { name="cytominer"; version="0.1.0"; sha256="1p988aw689kgpbglmzrnl30krnbynwk3dgjv7w3x2719hi481z2j"; depends=[caret doParallel dplyr foreach futile_logger magrittr purrr rlang tibble tidyr]; }; d3Network = derive2 { name="d3Network"; version="0.5.2.1"; sha256="1gh979z9wksyxxxdzlfzibn0ysvf6h1ij7vwpd55fvbwr308syaw"; depends=[plyr rjson whisker]; }; d3Tree = derive2 { name="d3Tree"; version="0.2.0"; sha256="0xjr36hdd00dy8s8z1a1s44dn2wg0nm6yqc1rri2l0dqrbh4nrbn"; depends=[dplyr htmlwidgets magrittr plyr stringr]; }; d3heatmap = derive2 { name="d3heatmap"; version="0.6.1.2"; sha256="1ici8j0wzzklhmw94qlxm292qs562vc32wq8mnjsas2n1p35vkmk"; depends=[base64enc dendextend htmlwidgets png scales]; }; d3plus = derive2 { name="d3plus"; version="0.1.0"; sha256="0kadz83pals03n0v3zqhmhf6visigk52yn58xckhb57fid4xzj5w"; depends=[htmlwidgets magrittr]; }; - d3r = derive2 { name="d3r"; version="0.8.2"; sha256="1i8y2pr79v2mfwgi6sgibsgwp0l717yf86dn07l39nfgyrxgx9f4"; depends=[dplyr htmltools tidyr]; }; + d3r = derive2 { name="d3r"; version="0.8.4"; sha256="01z70nc48z7l3lr5p3nndiv8hxqlbinn7yr8pd15yk35f46hcsbk"; depends=[dplyr htmltools tidyr]; }; dChipIO = derive2 { name="dChipIO"; version="0.1.5"; sha256="1xrafw5h071d8rfqaic3gifc80jpiddjz5x6l2cr8kgjvph60gqh"; depends=[]; }; dCovTS = derive2 { name="dCovTS"; version="1.1"; sha256="1pd50nfmfcqpi8zj20ngl0hc23qa4rabqhc1xci3ivyhs0valhsl"; depends=[doParallel energy foreach]; }; dGAselID = derive2 { name="dGAselID"; version="1.2"; sha256="0da7fi872i3ycb3j5v4isr4x2z39a68w4mdq859zslmqhiqd43b6"; depends=[ALL Biobase genefilter MLInterfaces]; }; dHSIC = derive2 { name="dHSIC"; version="2.0"; sha256="1acbzln2rlyranccsjndpw6pj4a2lyb24jb52r2wms8lsg4fn2m9"; depends=[Rcpp]; }; - dLagM = derive2 { name="dLagM"; version="1.0.2"; sha256="0wl1sivphm6plmvjixxs90ki8a1pi4nb2vxqdm5xxbi0ljwpgl1x"; depends=[AER dynlm formula_tools Hmisc plyr wavethresh]; }; - dMod = derive2 { name="dMod"; version="0.4"; sha256="12q80pk0j5081qz4rb19iib0n4h1yf1c42iq1z14yyrmki3266pm"; depends=[cOde deSolve ggplot2 plyr rootSolve stringr]; }; + dLagM = derive2 { name="dLagM"; version="1.0.10"; sha256="0fbblcg2z10a2yijxl6sgbzb59y0mwwg6wg1p68madkr4r3w79mw"; depends=[AER dynlm formula_tools plyr wavethresh]; }; + dMod = derive2 { name="dMod"; version="0.4.2"; sha256="0zxan4q3xlmk441yzl8jq53qh966njjy9hdprk96pvqf8pa3ca40"; depends=[cOde deSolve digest dplyr ggplot2 plyr rlang rootSolve stringr]; }; dSVA = derive2 { name="dSVA"; version="1.0"; sha256="0vy0flyg82x0n9vw6jf9f76qy84sp0wnis91faj37ac5hdv3pvsb"; depends=[sva]; }; + daarem = derive2 { name="daarem"; version="0.2"; sha256="1lh7p8nsn984v3p2fis0ipv4vd2wli60l730i47ij0g38swrs58x"; depends=[]; }; dad = derive2 { name="dad"; version="3.1.1"; sha256="120f7asg3hbr0c5n821jdr8c7cz67dbv1v646v6xgnyy4n6ym2qa"; depends=[e1071 lattice]; }; - dae = derive2 { name="dae"; version="3.0-16"; sha256="0nryjijr6cq0pm02ik58lish57ld3nfd16c908jq40dhgws2q7x9"; depends=[ggplot2]; }; + dae = derive2 { name="dae"; version="3.0-23"; sha256="0rsvnxvfbvcfwm544lwvp4ivwv2nndgscc3c5ap99br7c5jm4xym"; depends=[ggplot2]; }; daewr = derive2 { name="daewr"; version="1.1-7"; sha256="01n9g3adjk66wx9lm9gl6wa3y9ba5w0w0p5ayj8rx5ywxnm8fnvi"; depends=[BsMD FrF2 lattice]; }; daff = derive2 { name="daff"; version="0.3.0"; sha256="1kl5pjwxds6bz58zd5xaa1hknd6f9i0512895fhljqi7kvsrldra"; depends=[jsonlite V8]; }; dafs = derive2 { name="dafs"; version="1.0-37"; sha256="1vdi57qaqdn39yf1ih2gzry02l289q4bffpksglsl4shs6bg2206"; depends=[s20x]; }; @@ -5548,22 +5791,22 @@ in with self; { darts = derive2 { name="darts"; version="1.0"; sha256="07i5349s335jaags352mdx8chf47ay41q7b0mh2xjwn2h9kzgqib"; depends=[]; }; dashboard = derive2 { name="dashboard"; version="0.1.0"; sha256="1znqwvz49r47lp6q48qaas0s63wclgybav82a247qvcavzns3kip"; depends=[Rook]; }; dat = derive2 { name="dat"; version="0.4.0"; sha256="1nw16hsw9b4hpcl5rqrlw6yk9y2h1pd0ra1c7iz82sknkyd5afi6"; depends=[aoos data_table dplyr Formula magrittr progress tibble]; }; - data_table = derive2 { name="data.table"; version="1.11.4"; sha256="1mc1drqj5i5ar2za3nkh5j70y37s7z7xwqri2r2b72zkqggg3k7x"; depends=[]; }; - data_tree = derive2 { name="data.tree"; version="0.7.6"; sha256="0fq7wsql4rmbfjif3klccciq7iqhrwjirj21il6n9r5f1i6x5qxn"; depends=[DiagrammeR R6 stringr]; }; + data_table = derive2 { name="data.table"; version="1.11.8"; sha256="1nb6wngrk1a30m984524gf26fa1nwgyf4y4an94dibcwb5jp8hnw"; depends=[]; }; + data_tree = derive2 { name="data.tree"; version="0.7.8"; sha256="05svd1h70dn92imadw2djqqvchx30md74d4z6a00grkajj16cchb"; depends=[DiagrammeR R6 stringr]; }; data_world = derive2 { name="data.world"; version="1.2.2"; sha256="1d9hh4965f2d0lwh2xxhnxzc948ailkjzdax3d3z9l8lakqfrx0h"; depends=[dwapi httr ini miniUI shiny stringi]; }; - data360r = derive2 { name="data360r"; version="1.0.1"; sha256="1g245zg70ch81zjmd1ng16lks38qr0a6m63y582w558mza7v148g"; depends=[curl data_table jsonlite reshape2]; }; - dataCompareR = derive2 { name="dataCompareR"; version="0.1.1"; sha256="06nba2yir2yz1189bsag9yavdf9hfmpswxdy92dlnbz9d27jjsic"; depends=[dplyr knitr markdown stringi]; }; - dataMaid = derive2 { name="dataMaid"; version="1.1.2"; sha256="1phy03bya6zd3xpypic3ymjqgx8iv2y8661mfyvbz99a2bvspj5a"; depends=[ggplot2 gridExtra haven htmltools magrittr pander robustbase whoami]; }; + data360r = derive2 { name="data360r"; version="1.0.2"; sha256="09s1p5yh756jl13jq6jx10r009lqvpry5y7y83xd4dqwa180s9gg"; depends=[curl data_table jsonlite reshape2]; }; + dataCompareR = derive2 { name="dataCompareR"; version="0.1.2"; sha256="0n10dqnrlpwafxys68b3ly156235lhqby71qay0vb0r6bvl2g349"; depends=[dplyr knitr markdown stringi]; }; + dataMaid = derive2 { name="dataMaid"; version="1.2.0"; sha256="0w2dslyzr35y6mjg46sq7cc3mar6v29md1i716hiix9kzy7b5782"; depends=[DT ggplot2 gridExtra haven htmltools magrittr pander robustbase stringi whoami]; }; dataMeta = derive2 { name="dataMeta"; version="0.1.1"; sha256="13xxayqxbps07h0xr5b7sb7q30gy5zm7jzzaq4k20fskkjrzhzcm"; depends=[dplyr]; }; - dataPreparation = derive2 { name="dataPreparation"; version="0.3.6"; sha256="1nx9lbwrp55wyirqyfmwddilinhyd9428l9n4kb8bwms7hjcf18h"; depends=[data_table lubridate Matrix progress stringr]; }; + dataPreparation = derive2 { name="dataPreparation"; version="0.3.8"; sha256="1k4lww4n57zqf5lk2gwrjjk9qfv3b4zvb18591mnq5bbvylkw2c4"; depends=[data_table lubridate Matrix progress stringr]; }; dataQualityR = derive2 { name="dataQualityR"; version="1.0"; sha256="0f2410sd6kldv7zkqsmbz1js0p5iq7zwlnfwmmnlbrd303p35p3j"; depends=[]; }; dataRetrieval = derive2 { name="dataRetrieval"; version="2.7.3"; sha256="0lrv6fyqi7k079wdpqilgjlb4j2qfs3r02d9ip8s9yznfwqsl826"; depends=[curl dplyr httr jsonlite lubridate readr reshape2 xml2]; }; datacheck = derive2 { name="datacheck"; version="1.2.2"; sha256="1i3n5g1b6ix8gpn4c74s7ll1dbrllrzgpb1f3hk449d6p4kmisq6"; depends=[Hmisc shiny stringr]; }; - datacheckr = derive2 { name="datacheckr"; version="0.2.0"; sha256="1kk38pb4dsy6ll6drz2gsngzsv81pwmjrbvh3izm22h849mvlypv"; depends=[]; }; + datadigest = derive2 { name="datadigest"; version="1.0.2"; sha256="1v4nwflrgjhwkrdlrjnqyq1spv1jkgxn1kmapml0zrvnvwf0r1a1"; depends=[haven Hmisc htmltools htmlwidgets jsonlite miniUI shiny tibble]; }; datadogr = derive2 { name="datadogr"; version="0.1.2"; sha256="10zbxb9gkymw78ras9y4wrifz7cxh3y630yzjcf9ds2p557vcjzp"; depends=[anytime dplyr glue httr lubridate purrr stringr tibble tidyr]; }; - datadr = derive2 { name="datadr"; version="0.8.6"; sha256="0fmywnxcvw31vfb9iaxqiw19ycnd98v41pdsdknabysr7fpnygfq"; depends=[codetools data_table digest dplyr hexbin magrittr]; }; + datadr = derive2 { name="datadr"; version="0.8.6.1"; sha256="1x8j34gj5c5arr1iqxfx8cs8hjapylvfjsnh4k6a34z65r83h93y"; depends=[codetools data_table digest dplyr hexbin magrittr]; }; dataframes2xls = derive2 { name="dataframes2xls"; version="0.4.7"; sha256="10krlv0l5w021z0qd7rj93pzfjjmcjlda4xz4vq470bxbjmn1bss"; depends=[]; }; - datafsm = derive2 { name="datafsm"; version="0.2.1"; sha256="16l6ssprsvnpzxlfnqj7r061x700704s5gdci5x9ixdjmglakmdd"; depends=[caret GA Rcpp]; }; + datafsm = derive2 { name="datafsm"; version="0.2.2"; sha256="1q4vfvpvlp127lh6y2ls59gg8dg20syv0sqrwa7sfnml6ysb21q2"; depends=[caret GA Rcpp]; }; datamap = derive2 { name="datamap"; version="0.1-1"; sha256="0qm4zb9ldg4wz1a7paj5ilr1dhyagq81rk9l2v43hmkv52sssgkv"; depends=[DBI]; }; datamaps = derive2 { name="datamaps"; version="0.0.3"; sha256="00pvns98miq56z3prbb5qg608d5ns9wbp0711x3mmqg0bld1xwmp"; depends=[htmlwidgets magrittr]; }; datamart = derive2 { name="datamart"; version="0.5.2"; sha256="0c0l157fzkcp30ch4ymaalcx18zhz6sa5srr50w9izhbx3pmldxp"; depends=[base64 gsubfn markdown RCurl RJSONIO XML]; }; @@ -5571,12 +5814,12 @@ in with self; { dataone = derive2 { name="dataone"; version="2.1.1"; sha256="17x1v1v13v06qyjb5mvxcdnlp7ln73rhgaib1w1sc44385m33hxs"; depends=[base64enc datapack hash httr jsonlite parsedate plyr stringr uuid XML]; }; datapack = derive2 { name="datapack"; version="1.3.1"; sha256="0hzc68vgjvpm235zg8k2642c3jzh3ls9kp6lpz720y1b56q8k3n7"; depends=[digest hash redland uuid XML]; }; datapasta = derive2 { name="datapasta"; version="3.0.0"; sha256="022ci7iy683lh3fh13a4b3szzqp6j4fchil695bifhi0a34bnxyr"; depends=[clipr readr rstudioapi]; }; - datarobot = derive2 { name="datarobot"; version="2.8.0"; sha256="06yqp1lvskvcyiz8a2jy7kzv721qrvf5ycw6g9jl2bj84raifmap"; depends=[curl httr jsonlite yaml]; }; - datasauRus = derive2 { name="datasauRus"; version="0.1.2"; sha256="1ixfc1v0iv5jb4920957xhpq9kchdy482vdsm51wj1961ldrkhvh"; depends=[]; }; + datarobot = derive2 { name="datarobot"; version="2.9.0"; sha256="0z49dyr0gpgasnf1igyjivpjr2116rvkdirxxvq2nlb6q7i5smjd"; depends=[curl httr jsonlite yaml]; }; + datasauRus = derive2 { name="datasauRus"; version="0.1.4"; sha256="1w1yhwwrmh95bklacz44wjwynxd8cj3z8b9zvsnzmk18m5a4k0fl"; depends=[]; }; dataseries = derive2 { name="dataseries"; version="0.2.0"; sha256="11wc2p5m8qbdmkpbd21lpwl28a1dpab88c3gqyrhsn0298lpnip4"; depends=[]; }; - datasets_load = derive2 { name="datasets.load"; version="0.1.0"; sha256="029rxg0h17nszkxgq5kjd0njymb8pgdsabmz5slshzd2ijjh82jz"; depends=[DT miniUI shiny]; }; + datasets_load = derive2 { name="datasets.load"; version="0.3.0"; sha256="13ywnqln831i5hlf1cpqcyc77blg99w8jvy8jic17z86fjxh4gim"; depends=[DT miniUI shiny]; }; datastepr = derive2 { name="datastepr"; version="0.0.2"; sha256="039yggdj8jdici7hwmkjwgix45lvwjl7rw5h2rfzsm9xaq6vw1z2"; depends=[dplyr lazyeval magrittr R6 tibble]; }; - datastructures = derive2 { name="datastructures"; version="0.2.6"; sha256="1sigcm4w9fj6i538vpf939x9blwx2cfa626lfc8ya8fr8wd5w7vg"; depends=[BH purrr Rcpp]; }; + datastructures = derive2 { name="datastructures"; version="0.2.7"; sha256="0lvm2n056msbmx3aw3a2wkn8vcyjhb5m9iaqdirpcvbzdpigfj80"; depends=[BH purrr Rcpp]; }; datasus = derive2 { name="datasus"; version="0.4.1"; sha256="175bzhjigri49p4v9v3kwdc233w0l3v35220m05qsbpn6in7gw67"; depends=[dplyr httr magrittr RCurl readr rvest stringi stringr xml2]; }; datautils = derive2 { name="datautils"; version="0.1.5"; sha256="1yy25a84zmfh54jvxwa7mv4j296rmjgd40m4p81mrsswlqvncmfn"; depends=[deldir gplots gtools]; }; dataverse = derive2 { name="dataverse"; version="0.2.0"; sha256="0lyga8rdsir2yr1n9nr10iiaf6a7dxp1nb04bx8mq8ljrvpkgr8n"; depends=[httr jsonlite xml2]; }; @@ -5592,41 +5835,44 @@ in with self; { dbConnect = derive2 { name="dbConnect"; version="1.0"; sha256="1vab5l4cah5vgq6a1b9ywx7abwlsk0kjx8vb3ha03hylcx546w42"; depends=[gWidgets RMySQL]; }; dbEmpLikeGOF = derive2 { name="dbEmpLikeGOF"; version="1.2.4"; sha256="0vhpcxy702cp3lvlif2fzmvccys8iy7bv1fbg6ki2l8bvn2f7c5p"; depends=[]; }; dbEmpLikeNorm = derive2 { name="dbEmpLikeNorm"; version="1.0.0"; sha256="0h5r2mqgallxf9hin64771qqn9ilgk1kpsjsdj2dqfl3m8zg967l"; depends=[dbEmpLikeGOF]; }; - dbarts = derive2 { name="dbarts"; version="0.9-4"; sha256="1xglsx2x8jq71q5y377kcc92j8nymh3v11idjj44gixpm8lspljc"; depends=[]; }; + dbarts = derive2 { name="dbarts"; version="0.9-5"; sha256="0pjw5fljn3fzsimsyfc21xq6klrxmav8snjjjp8myn19viikv1rg"; depends=[]; }; dbfaker = derive2 { name="dbfaker"; version="0.1.0"; sha256="00n2z4q5drpg26pw826i16rg07m7w66a0r466q2lrl14hxs4rcaq"; depends=[assertive DBI dplyr foreach parsedate RPostgreSQL tidyr]; }; - dbhydroR = derive2 { name="dbhydroR"; version="0.2-5"; sha256="1vldyc7ksi0pbdvnydbsjzap3ghh447x5c15n0s5isw82mqssnjz"; depends=[httr reshape2 XML]; }; + dbhydroR = derive2 { name="dbhydroR"; version="0.2-6"; sha256="0pmd6bakifacmdk2zwlsg2zfdqc5jibc5jbd1mvnmllh5d0wwcqm"; depends=[httr reshape2 XML]; }; dblcens = derive2 { name="dblcens"; version="1.1.7"; sha256="02639vyaqg7jpxih8cljc8snijb78bb084f4j3ns6byd09xbdwcw"; depends=[]; }; dblr = derive2 { name="dblr"; version="0.1.0"; sha256="0wzmhmp706mw0pkh81nsb7qzclwyhm6f2mjvpvz043ng5xrxwvvw"; depends=[CatEncoders data_table Metrics xgboost]; }; dbmss = derive2 { name="dbmss"; version="2.6-3"; sha256="0b3vbsb01rz46mspfk8v9dgwqkxnjkv5d6152zg1zsvyv0z9wvqd"; depends=[cubature Rcpp RcppParallel spatstat spatstat_utils]; }; dbplot = derive2 { name="dbplot"; version="0.3.0"; sha256="1sdhw73a518pj81p4xzfkyk5qnfvv7pmizqgwypmkmr3j87klkdx"; depends=[dplyr ggplot2 purrr rlang]; }; - dbplyr = derive2 { name="dbplyr"; version="1.2.1"; sha256="1nwrls9c3kc9q7405jp6b9sh23642sz13yw55iikgw134shffj5k"; depends=[assertthat DBI dplyr glue purrr R6 rlang tibble tidyselect]; }; + dbplyr = derive2 { name="dbplyr"; version="1.2.2"; sha256="0j5w6a1qim972kv4vmvinp3j50yr4idmm9cd3w7y3zsz0nq0nhcx"; depends=[assertthat DBI dplyr glue purrr R6 rlang tibble tidyselect]; }; dbscan = derive2 { name="dbscan"; version="1.1-2"; sha256="08s73i1pnyfsm10sf15rnn58lj1pzrca6i38dq5ivr5xghb3pksy"; depends=[Rcpp]; }; dbstats = derive2 { name="dbstats"; version="1.0.5"; sha256="0pr80mx8y87l96hhg0rp3ajxl7yx2f8qr0y1zrjkbzxavjmp9k34"; depends=[cluster pls]; }; - dbx = derive2 { name="dbx"; version="0.1.0"; sha256="026iqa2wnh0amkv0nnflg3wyqnfrh94imrw486k5i1561abdzndq"; depends=[DBI]; }; + dbx = derive2 { name="dbx"; version="0.2.2"; sha256="1n6r2plq718xwxw2q2dxc3vql0brnin7dm3lsv1nh41rwk9ypsp8"; depends=[DBI]; }; dc3net = derive2 { name="dc3net"; version="1.2.0"; sha256="19ibsvbnq6y88vqvgkm31zrqwjhpml59d792bz0zkk50r1q5bnyr"; depends=[c3net igraph RedeR]; }; dcGOR = derive2 { name="dcGOR"; version="1.0.6"; sha256="0rvwa25r23yayx1i6xhkfaw2z85d2iyfx3slg3aq1m0fa7kj380p"; depends=[dnet igraph Matrix]; }; dcemriS4 = derive2 { name="dcemriS4"; version="0.55"; sha256="15x4hjc5fwpn80h90q5x9a3p84pp3mxsmcx4hq5l0j52l9dy9nv3"; depends=[oro_nifti]; }; dclone = derive2 { name="dclone"; version="2.2-0"; sha256="05myb01ypnhf9wdk3i8s9xldn8ihvw7gf4ajqld886nvc306rfkv"; depends=[coda Matrix rjags]; }; dcminfo = derive2 { name="dcminfo"; version="0.1.7"; sha256="03r0ynzc5cck2rz20zbg5zx8v6s66ivizqav1pjkyvp6kxkmnf8q"; depends=[CDM]; }; dcmle = derive2 { name="dcmle"; version="0.3-1"; sha256="1d6zk9413h30wcw8q1gnjzk67vshmjcpnh8zjxrsh1h69i1z6rpy"; depends=[coda dclone lattice]; }; - dcmodify = derive2 { name="dcmodify"; version="0.1.1"; sha256="1a909v6jhihwwmq7lzv2xazrkfa1553kbrjsbjfsh1qrqdiam3sr"; depends=[settings validate yaml]; }; - dcmr = derive2 { name="dcmr"; version="1.0"; sha256="1a89wr1n8sykjbwa316zlmcffaysksrqnbd89anxqj8sgw9xv6jq"; depends=[ggplot2 KFAS plyr reshape2 tableplot]; }; + dcmodify = derive2 { name="dcmodify"; version="0.1.2"; sha256="093rh3r3n0wjdpx861xiqd1zqd5v1v9rzxgcynz4awr7jbm5xszi"; depends=[settings validate yaml]; }; dcurver = derive2 { name="dcurver"; version="0.9.1"; sha256="1cfy0j3rmi3laszrgd3i59cfy4xfs2p6h9dcwbkwq6wnshrpypfn"; depends=[Rcpp RcppArmadillo]; }; dcv = derive2 { name="dcv"; version="0.1.1"; sha256="12c716x8dnxnqksibpmyysqp2axggvy9dpd55s9bhnsvqvi6dshj"; depends=[lmtest]; }; ddalpha = derive2 { name="ddalpha"; version="1.3.4"; sha256="16cn0bhbaz9l9k4y79sv2d4f7pvs7dyka273y89igs5jvr99kfj1"; depends=[BH class geometry MASS Rcpp robustbase sfsmisc]; }; ddeploy = derive2 { name="ddeploy"; version="1.0.4"; sha256="06s4mn93sl33gldda9qab8l3nqig8zq0fh1s2f98igsysmn31br5"; depends=[httr jsonlite]; }; + ddiv = derive2 { name="ddiv"; version="0.1.0"; sha256="1r2sxlkw1vxf2svdi1nary3hb7c5k1b4j820mj268r9swmy632ch"; depends=[MASS segmented]; }; ddpcr = derive2 { name="ddpcr"; version="1.9"; sha256="0xdy36wdl972xgzs3chzs7x1n4z1xvj1vahcz2pxa1wrr4sd9z8q"; depends=[dplyr DT ggplot2 lazyeval magrittr mixtools plyr readr shiny shinyjs]; }; + ddsPLS = derive2 { name="ddsPLS"; version="1.0.1"; sha256="08kkjs50zn9z6mvjiz9ic09w01h7w088plgnbcg10vc7cbjgr05a"; depends=[doParallel foreach MASS RColorBrewer Rdpack]; }; ddst = derive2 { name="ddst"; version="1.4"; sha256="1y0immm337adkd2bjx8c5pf02w9wysv3gj26f4qf0jiba0f2wk8n"; depends=[evd orthopolynom]; }; deBInfer = derive2 { name="deBInfer"; version="0.4.2"; sha256="108vijk71sgsj14hwfv78r4lnn68cybvnpr92zvrvl0d82b7qxfd"; depends=[coda deSolve MASS mvtnorm PBSddesolve plyr RColorBrewer truncdist]; }; deGradInfer = derive2 { name="deGradInfer"; version="1.0.0"; sha256="1wl1pw1rwins4gr47a8ii4diw6wd6cx8ib4l5bhri5f3crbw7l86"; depends=[deSolve gdata gptk]; }; deSolve = derive2 { name="deSolve"; version="1.21"; sha256="0qqc4mknw1jblzcmph1dg3k1p6w42yal0k1xjh8pqk7yb3a75hs5"; depends=[]; }; deTestSet = derive2 { name="deTestSet"; version="1.1.5"; sha256="07wbgniwkpp0yry6wvchvszr8isxs1i9k6km951r5c009w1iviwk"; depends=[deSolve]; }; deadband = derive2 { name="deadband"; version="0.1.0"; sha256="02pq3d0l0wy8bdlyfir3zf46j1ascx4qajyq5cf28yl62q6ngq5d"; depends=[TTR]; }; + deal = derive2 { name="deal"; version="1.2-39"; sha256="0sw0v1mm004ky1gjw3dmvf2vb7nf2j9s9386bhqxijw63j7xnjd3"; depends=[]; }; deamer = derive2 { name="deamer"; version="1.0"; sha256="1xbxr78n6s1yhf192ab4syi1naqlwl9z4cxzchrkw80q7bxqfiz8"; depends=[]; }; debugme = derive2 { name="debugme"; version="1.1.0"; sha256="1c9sg55zvf10h8198jdnpamm6f66lzw3c3jnmdp9ls6na0j0xbjd"; depends=[crayon]; }; - decido = derive2 { name="decido"; version="0.1.0"; sha256="1d53qcpy165f9izaj0x5x5d5h7jvihhk6mghs9g52dfxrvpndfgn"; depends=[oz Rcpp]; }; + debugr = derive2 { name="debugr"; version="0.0.1"; sha256="0lfq0s0hibd00558vl3dmvrkzxjc7q62xr8sqzai0pv9a9lhixcn"; depends=[rprojroot rstudioapi]; }; + decido = derive2 { name="decido"; version="0.2.0"; sha256="17myg67qry1sbd1scv9bbvdh67fpcnqcb6r8n0kajdxb96vnlqk0"; depends=[Rcpp]; }; decision = derive2 { name="decision"; version="0.1.0"; sha256="13d0yyg5zp7n3r92l0l1dsffxfph6vacrlzga9rz41l5pja72z6g"; depends=[]; }; - decisionSupport = derive2 { name="decisionSupport"; version="1.103.7"; sha256="1nmrr0fic391sxxfnyp32yb889bwb3zkyb4b8g8sk2pgrsqrbybl"; depends=[chillR msm mvtnorm nleqslv rriskDistributions]; }; + decisionSupport = derive2 { name="decisionSupport"; version="1.103.8"; sha256="1xp97v22ar4nsv2q4di6rqfin7pa7a6zqw5d1zmm5aqxfi07nc4x"; depends=[chillR msm mvtnorm nleqslv rriskDistributions]; }; decode = derive2 { name="decode"; version="1.2"; sha256="1qp0765gl3pgfdzjwj7icf3zminxxmrlw6gx3vj51y6c2y5ws4as"; depends=[]; }; decoder = derive2 { name="decoder"; version="1.1.12"; sha256="0jacp5fqi3l87a86kzhivwd7bl9ndcpymw1vkzmr9r5my8d119pk"; depends=[backports]; }; decomposedPSF = derive2 { name="decomposedPSF"; version="0.1.3"; sha256="0p9n0qi21facdp9c4fzs78ap4w1wvpvkv51kgx1gkr949kw8cv4n"; depends=[forecast PSF Rlibeemd tseries]; }; @@ -5640,7 +5886,8 @@ in with self; { deeplr = derive2 { name="deeplr"; version="1.0.0"; sha256="0pg1vy4x53qns8qn5sv0nqplf23w8dwj0b0wbibpr52lgqjc34r7"; depends=[httr purrr rjson stringr tibble tokenizers utf8]; }; deepnet = derive2 { name="deepnet"; version="0.2"; sha256="09crwiq12wzwvdp3yxhc40vdh7hsnm4smqamnk4i6hli11ca90h4"; depends=[]; }; default = derive2 { name="default"; version="1.0.0"; sha256="0hzxgp9la9kll5cw3m4gd02rii571xsn1v53kz407k7k6rfg5mda"; depends=[]; }; - define = derive2 { name="define"; version="0.2.7"; sha256="0m5nk6shfak43zw68vzc9ncl0a3rrrkhc5ckhb5yhjllj6g5yigf"; depends=[encode Hmisc latexpdf SASxport spec]; }; + define = derive2 { name="define"; version="0.2.8"; sha256="12xy1l1z1ilk85kbl7x4na99n6hc5axwrhpb6m6ipmbii4vv407v"; depends=[encode Hmisc latexpdf SASxport spec]; }; + deflateBR = derive2 { name="deflateBR"; version="1.1.2"; sha256="17zsy10k12gmffbk7nagi60xj347q0bf7wr885fiylqz2xiy9fl9"; depends=[dplyr httr lubridate]; }; deformula = derive2 { name="deformula"; version="0.1.1"; sha256="0h85yzl8kvjwrn1mkzyblvknf7gg8kx8y85qnvkwfbr9ik42ngn1"; depends=[]; }; degenes = derive2 { name="degenes"; version="1.1"; sha256="1xxn5j06qizywimrp1pl8z3yjdy1a167b9jnm77gmv87rp6j240c"; depends=[]; }; degreenet = derive2 { name="degreenet"; version="1.3-3"; sha256="07mkj2sdp09624mmb1x3djjypnrzn43qn2j4m93blli51j6zchm3"; depends=[igraph network]; }; @@ -5651,12 +5898,13 @@ in with self; { deltaPlotR = derive2 { name="deltaPlotR"; version="1.6"; sha256="15vjg3viyfrxvvh34p8i7j8p0vpg5628g8198adhi0i2ri3ygz9a"; depends=[MASS]; }; deltar = derive2 { name="deltar"; version="1.0.0"; sha256="1ki89ysz4qlq5z094ybg3aqfcb6g633ccvpj1cg6nri9z5qjwpm1"; depends=[Bchron]; }; demi = derive2 { name="demi"; version="1.1.2"; sha256="04dq4db9ibvv91nm0gz8dfbgv1gpmalf9hv6i78dwhh1xzjg1mig"; depends=[affxparser affy devtools oligo plyr R_utils]; }; - deming = derive2 { name="deming"; version="1.2"; sha256="0lhc9asly988j38d6pdz54b8yxzigrchnz57inj2my33cfbzp300"; depends=[boot]; }; + deming = derive2 { name="deming"; version="1.3"; sha256="0r5wx0cj6ym97jplvfyz36iig7zczdd6fiqf8g3vc4f53mqlhx9b"; depends=[boot]; }; demoKde = derive2 { name="demoKde"; version="0.9-4"; sha256="0p4v808m42wbv8ibdfqzm43cbbg0yl452wnm1mzqq2n37z6yljkr"; depends=[]; }; - demogR = derive2 { name="demogR"; version="0.5.0"; sha256="1y7pkf1m8fqjsvs0szyaqga2y7p3dvj0r85nz8nzqbmy4zrrv4w8"; depends=[]; }; + demogR = derive2 { name="demogR"; version="0.6.0"; sha256="06x82ffbdv6ifl8xh52d3npdwha67v1ylfjp78j5pa4wdqkg221b"; depends=[]; }; demography = derive2 { name="demography"; version="1.20"; sha256="097k0chs8shm1r9ny6jdx2kp2shyxsivjw1n1rhb3bs0m0l3vm9r"; depends=[cobs forecast ftsa mgcv rainbow RCurl strucchange]; }; - dendextend = derive2 { name="dendextend"; version="1.8.0"; sha256="1virn3c232xwcq3d0hhkgjh5gpzl01s39iwii5gxcm9mnsxjzdrh"; depends=[fpc ggplot2 magrittr viridis whisker]; }; - dendroTools = derive2 { name="dendroTools"; version="0.0.9"; sha256="192bzpq7zxnknkn7g6w10lsqdj5qk0dq2z0dpdripi768y63cdim"; depends=[brnn dplyr ggplot2 gridExtra knitr magrittr MLmetrics oce plotly reshape reshape2 RWeka scales]; }; + demu = derive2 { name="demu"; version="0.2.0"; sha256="0prfl2i3q2n5f4qpvkksyi8qvwj2fd9v82cr6val7abvcvbn9276"; depends=[ClusterR fields Matrix Rcpp RcppArmadillo spam]; }; + dendextend = derive2 { name="dendextend"; version="1.9.0"; sha256="1jiani6zwfajky2vafvay2hq158nh99rdrk3j00lycspds9v35fd"; depends=[fpc ggplot2 magrittr viridis whisker]; }; + dendroTools = derive2 { name="dendroTools"; version="1.0.1"; sha256="1ym8vkvi4b6wv6iygzbj1kiv54cayfixlmx1ilvs2cv794rbfmck"; depends=[brnn dplyr ggplot2 gridExtra knitr magrittr MLmetrics oce plotly reshape reshape2 RWeka scales]; }; dendroextras = derive2 { name="dendroextras"; version="0.2.3"; sha256="0hb7crbgsnbcwvbk05iz5ik45n7zgysmwjj6xc46131yd8l0i1qx"; depends=[]; }; dendrometeR = derive2 { name="dendrometeR"; version="1.0.0"; sha256="1par27ipgbfbrmdlwvkf82i5dgnfrcawmavakrf8lplin2hhb7gs"; depends=[forecast pspline zoo]; }; dendsort = derive2 { name="dendsort"; version="0.3.3"; sha256="1m4qh79ppfvipmbi8m8vwq0hqmwwipbg5izihz5j6x8a4g5i6iym"; depends=[]; }; @@ -5670,18 +5918,19 @@ in with self; { denstrip = derive2 { name="denstrip"; version="1.5.4"; sha256="0hzxphj740q6pfa1q42knr7n12bmnawg7b2fs74msxn83dka5cmq"; depends=[lattice]; }; depend_truncation = derive2 { name="depend.truncation"; version="3.0"; sha256="1jym52qxx8v4kbq2578d03q2593q96jccr85if47djikw0aaxmcr"; depends=[mvtnorm]; }; depmix = derive2 { name="depmix"; version="0.9.14"; sha256="12mvsd9zab55yg02r309h5i7hldwhh3bd60bzcvwip8vsmym5611"; depends=[MASS]; }; - depmixS4 = derive2 { name="depmixS4"; version="1.3-3"; sha256="0ls30v59hzyd684w4a3aygq1i5m8iq4gxsh8mmjxdq8qx0v84hk2"; depends=[MASS nnet Rsolnp]; }; + depmixS4 = derive2 { name="depmixS4"; version="1.3-5"; sha256="155bxfyhkmwz3asx1q8myvn3qjb3i2aq7pnw0r7kxygxzn071hkq"; depends=[MASS nnet Rsolnp]; }; depth = derive2 { name="depth"; version="2.1-1"; sha256="17fxv4a5fbb65p7kmb4iakik5ng6401y7gmknkfr66fmjq65i1sm"; depends=[abind circular rgl]; }; depth_plot = derive2 { name="depth.plot"; version="0.1"; sha256="0zjg9iyqmcnkvwc9w2j7lmk3k9nsg6n8m6vq5x44d1bp4g2gr6jv"; depends=[mvtnorm]; }; depthTools = derive2 { name="depthTools"; version="0.4"; sha256="1699r0h1ksgrlz9xafw2jnqfsc7xs0yaw97fc6dv3r11x6gxk00y"; depends=[]; }; dequer = derive2 { name="dequer"; version="2.0-1"; sha256="04kzlff8xa733qkkx0gacgig7d4l7yvgqmzva0mj8di12byh214p"; depends=[]; }; derivmkts = derive2 { name="derivmkts"; version="0.2.3"; sha256="0qw1xdn3mhz9kx4z352hdny2f46p3rx61hjk2ha5bibm8hnyzdpa"; depends=[mnormt testthat]; }; desc = derive2 { name="desc"; version="1.2.0"; sha256="1s6s13fk6sxwcj8wzkwxl9vr33153xx11p5wi9avqx3rzkabavz6"; depends=[assertthat crayon R6 rprojroot]; }; - descomponer = derive2 { name="descomponer"; version="1.4"; sha256="12zpkixclm6jmrgzvcy48c1mdqh9dgadzf9026wjyamphxkkjbip"; depends=[taRifx]; }; + descomponer = derive2 { name="descomponer"; version="1.5"; sha256="1dxnvignd3hwagkghvdiqfrkxlhyvxndprcyh8n9pmq8zgask5qk"; depends=[]; }; descr = derive2 { name="descr"; version="1.1.4"; sha256="05maviw8l8qhmy7p80gs3dlyy6pqk5k1686ny4xla4psj8mr7lbk"; depends=[xtable]; }; describer = derive2 { name="describer"; version="0.2.0"; sha256="1pjyihmn4gkaamixsc3qwynsc02pwv9bgn6s7z7acmmsybhhs6xn"; depends=[]; }; descriptr = derive2 { name="descriptr"; version="0.4.1"; sha256="1jpcfpidi49lyn02sl0hwsixzln9frrz03vrap1aq0phjcln39hh"; depends=[dplyr forcats ggplot2 magrittr rlang scales shiny tibble tidyr]; }; - desctable = derive2 { name="desctable"; version="0.1.2"; sha256="135v6gmrvmap71il13i5s0wsxddv8wyqb70ygl05jbmb3n4x61y7"; depends=[dplyr DT htmltools pander purrr]; }; + descstatsr = derive2 { name="descstatsr"; version="0.1.0"; sha256="1pz5lww1dkkqvsq6h0vkch39bj76qffmmag3zlag5in75s4wj0wl"; depends=[moments zoo]; }; + desctable = derive2 { name="desctable"; version="0.1.3"; sha256="1bc0xb7v1fnl91vbrh6xbqxnk1yq5ahxchlxb30dvpkjzycdnr4w"; depends=[dplyr DT htmltools pander purrr]; }; deseasonalize = derive2 { name="deseasonalize"; version="1.35"; sha256="1fjsa7g34dckjs6mx9b10m99byxagggm0p9pw2f1vmpjqlasin0l"; depends=[FitAR lattice]; }; desiR = derive2 { name="desiR"; version="1.2.1"; sha256="0ghcv96bbwn74mka4dpf2lkpnlikjn3q6lx2sl8bbw77nriap0n6"; depends=[]; }; designGG = derive2 { name="designGG"; version="1.1"; sha256="1x043j36llwd7kd4skbpl2smz2ybsxjqf5yd1xwqmardq60gdv2w"; depends=[]; }; @@ -5690,7 +5939,7 @@ in with self; { desirability = derive2 { name="desirability"; version="2.1"; sha256="094gxvp6a60lfcc0a0gk9rv1p6ajnzq9m58sy8cvhcj5337g4fmk"; depends=[]; }; desire = derive2 { name="desire"; version="1.0.7"; sha256="0jmj644nj6ck0gsk7c30af9wbg3asf0pqv1fny98irndqv508kf6"; depends=[loglognorm]; }; desplot = derive2 { name="desplot"; version="1.4"; sha256="0brmdp095zcwx7gncng1ls972kr67ldwiq081wyafn9jm9z461ix"; depends=[lattice reshape2]; }; - detect = derive2 { name="detect"; version="0.4-1"; sha256="0hq3imp4w6bd8x4njcfrvcs5lf0vrfnags1zdph86d7hlrwfds62"; depends=[Formula Matrix pbapply]; }; + detect = derive2 { name="detect"; version="0.4-2"; sha256="03xzv13y2l15afyp00lgvbh51vxg1jaakxjcbnsxzdgb11039x2g"; depends=[Formula Matrix pbapply]; }; detectRUNS = derive2 { name="detectRUNS"; version="0.9.5"; sha256="0w4pz7waaabgsb47xcmgiz8bzlrs2a83y3v6j7bqb5125y1wn8hw"; depends=[data_table ggplot2 gridExtra iterators itertools plyr Rcpp reshape2]; }; detector = derive2 { name="detector"; version="0.1.0"; sha256="010i063b94hzx7qac8gpl67gmk7hzgqm9i1c7pbbw4la3wcd9lz7"; depends=[stringr]; }; detpack = derive2 { name="detpack"; version="1.1.1"; sha256="0q7c01bjrvrlbrhb8vhkjw2f43jp46ny3jdyay0j760cfdaqb5zk"; depends=[]; }; @@ -5699,10 +5948,11 @@ in with self; { detzrcr = derive2 { name="detzrcr"; version="0.2.3"; sha256="09a8x7zphsk06n64qqbh840vrp89sza9vfnz08il6jdy77j02974"; depends=[ggplot2 MASS shiny]; }; devEMF = derive2 { name="devEMF"; version="3.6-1"; sha256="0lhf11bdgizhm2im13d0mc0ca834kg2cyabz92jp4mmhjvglrgf3"; depends=[]; }; devFunc = derive2 { name="devFunc"; version="0.1"; sha256="0f2s5gssk9napmah7zcss1rnh7pzlq90gzwcnvyr9rrq6k118n8q"; depends=[plyr stringr]; }; - devRate = derive2 { name="devRate"; version="0.1.7"; sha256="1vmq467a60fz45fwdp0qs51fzdrdyj61vvdlk82046akzs8mvjvy"; depends=[]; }; - devtools = derive2 { name="devtools"; version="1.13.6"; sha256="1d9n49djydywfyp9w3njgxs5lag4ac7719wmxy1lkgcmn3l9sx5r"; depends=[digest git2r httr jsonlite memoise rstudioapi whisker withr]; }; - dexter = derive2 { name="dexter"; version="0.8.0"; sha256="1lnhgy3ji6qa9qw0hdv4r8m4igcsasg0fx1kkz8lr80hxdg98zc3"; depends=[colorspace DBI dbplyr dplyr DT fastmatch purrr RColorBrewer rlang rprintf RSQLite shiny shinyBS shinydashboard tibble tidyr]; }; - dextergui = derive2 { name="dextergui"; version="0.1.3"; sha256="0k0dvsb5vvbhw2x57kgsifpiv9jrglapxzillj0nglg8i71wwypg"; depends=[Cairo DBI dexter dplyr DT ggExtra ggplot2 ggridges htmltools htmlwidgets igraph jsonlite networkD3 RColorBrewer RCurl readODS readxl rlang shiny shinyBS shinyFiles shinyjs tibble tidyr writexl]; }; + devRate = derive2 { name="devRate"; version="0.1.9"; sha256="1dy9hfhhlxj5sim69870dkwrarrl5pvmfvls8ys43h300my331gp"; depends=[]; }; + devtools = derive2 { name="devtools"; version="2.0.1"; sha256="1nyspqicn9zd1rgq3k07b3179i8w5ys6jbd65g9q8qczrb7z3x8f"; depends=[callr cli digest git2r httr jsonlite memoise pkgbuild pkgload rcmdcheck remotes rstudioapi sessioninfo usethis withr]; }; + dexter = derive2 { name="dexter"; version="0.8.1"; sha256="0lkx1prngds2jcqw9b504as1q80ghgncms0sldw2pdgmklncha6l"; depends=[colorspace DBI dbplyr dplyr DT fastmatch purrr RColorBrewer rlang rprintf RSQLite shiny shinyBS shinydashboard tibble tidyr]; }; + dexterMST = derive2 { name="dexterMST"; version="0.1.0"; sha256="0c9djz8n38x9ff9yh8ah77a4nnhanyqxnbzhi5i77si0zk8p7505"; depends=[crayon DBI dbplyr dexter dplyr fastmatch igraph Rcpp rlang RSQLite tibble tidyr]; }; + dextergui = derive2 { name="dextergui"; version="0.1.4"; sha256="0im7ych6wypjrywmzwk5d40ak87rbaqqql4rq8zf10ysai4j9gwm"; depends=[Cairo DBI dexter dplyr DT ggExtra ggplot2 ggridges htmltools htmlwidgets igraph jsonlite networkD3 RColorBrewer RCurl readODS readxl rlang shiny shinyBS shinyFiles shinyjs tibble tidyr writexl]; }; df2json = derive2 { name="df2json"; version="0.0.2"; sha256="10m7xn7rm4aql1bzpckjcx5kvdw44m1pxgzqkgkd40lzqb1cwk18"; depends=[rjson]; }; dfCompare = derive2 { name="dfCompare"; version="1.0.0"; sha256="1lhx69j0bkjbnp5jz23hrbxjcf04vf3big4k593ixz003xs2077f"; depends=[]; }; dfcomb = derive2 { name="dfcomb"; version="2.5-0"; sha256="16wa7shc5rw8sax0x94i0lvg1h4wnq51mqdvsc5z8a5ki84jxlra"; depends=[BH Rcpp RcppArmadillo RcppProgress]; }; @@ -5713,27 +5963,30 @@ in with self; { dfoptim = derive2 { name="dfoptim"; version="2018.2-1"; sha256="1gya0sx8ajy04kscds06d6m9prxdwr1dmyfc6awsm6r1jwbibzb3"; depends=[]; }; dfped = derive2 { name="dfped"; version="1.1"; sha256="11ffsah14igba276m9d3cla0kgb3isizm5d7j1iqcd0wq23il7hq"; depends=[ggplot2 rstan]; }; dfphase1 = derive2 { name="dfphase1"; version="1.1.1"; sha256="0bk4bl5lqd7m4mzk6kg71fmh918wcy85zghr3lyayxlk30fl4ppc"; depends=[lattice Rcpp robustbase]; }; - dfpk = derive2 { name="dfpk"; version="3.4.1"; sha256="1nmn5ir20wx3qvcf9rvnwnni5kqbn8adhc2354fb5gcvbnxlc7mc"; depends=[BH dfcrm ggplot2 PK Rcpp RcppEigen rstan StanHeaders]; }; + dfpk = derive2 { name="dfpk"; version="3.5.0"; sha256="1jl1ddi7kq1w95gvz3j4a4yxvnjk3ml7vqvb83lqzkb1ms8wlxw3"; depends=[BH dfcrm ggplot2 PK Rcpp RcppEigen rstan StanHeaders]; }; dga = derive2 { name="dga"; version="1.2"; sha256="13mfampnghcs5xplzq69bw948lqhw561pn54j3gb0ydsg5bm5vmr"; depends=[chron]; }; dggridR = derive2 { name="dggridR"; version="2.0.3"; sha256="1gdwxrl5c5mprfk7rx5mk8davi4mmg1crccxaaipnbnsilg9j9vh"; depends=[dplyr ggplot2 Rcpp rgdal sp]; }; - dglars = derive2 { name="dglars"; version="2.0.1"; sha256="18iypbvk805xh0ybwawwvswsp086q2kjj2cmk1yhlq810260j686"; depends=[Matrix]; }; + dglars = derive2 { name="dglars"; version="2.1.0"; sha256="1miqrsb1k36mcfvwf4i94z7sn3qq6wkikwv3fiyzyd2q7ny9a068"; depends=[Matrix]; }; dglm = derive2 { name="dglm"; version="1.8.3"; sha256="0vj4vddqcrjzgqsi6zsxm22gj5pa5dm50wcxip4vi8kbwxaahnaj"; depends=[statmod]; }; dgmb = derive2 { name="dgmb"; version="1.2"; sha256="1r5md917wipx78n63x87fpvsc3h87c68cpacrrs9dhss199p1a5k"; depends=[abind MASS]; }; - dgo = derive2 { name="dgo"; version="0.2.14"; sha256="0pizzyqgnng3g5g9q2qa5wcwfdl94rz69ah071qx01k03fzayg86"; depends=[assertthat data_table dgodata ggplot2 lubridate R6 rstan survey]; }; + dgo = derive2 { name="dgo"; version="0.2.15"; sha256="16z3vag1fwsnmynqh0zpwq5qp5ac3xf4787lwqy7asx8qgcc3wmw"; depends=[assertthat data_table dgodata ggplot2 lubridate R6 rstan survey]; }; dgodata = derive2 { name="dgodata"; version="0.0.2"; sha256="03cyiig8pn7fdkrkrd29cwy5g63bp57bpl9jmdxfi03smngzbz0m"; depends=[]; }; dgof = derive2 { name="dgof"; version="1.2"; sha256="02qnb3i131hx05k8l5n3xbl5sqmmc2fh19bsgcacgj8ixs4wyjvi"; depends=[]; }; dhga = derive2 { name="dhga"; version="0.1"; sha256="1n48irj53g3kn451ak5ly50wxdn7qmzi2kib8clsvcx2n7mvpgcm"; depends=[VennDiagram]; }; + dhglm = derive2 { name="dhglm"; version="2.0"; sha256="1918wkylldcdxjggly3a4yh4cv2nkig5bjfx0j79av633hahlg92"; depends=[boot car MASS Matrix sandwich]; }; + dhh = derive2 { name="dhh"; version="0.0.1"; sha256="00kg2x1was85aq2vr15bak8y5p4mymbs8pbriijlbw64401djmb0"; depends=[]; }; di = derive2 { name="di"; version="1.1.4"; sha256="1w2gjhyi410z98d8wnhbd69jxm69nz4pmnr4fb09i70a90f53s25"; depends=[scales]; }; diagis = derive2 { name="diagis"; version="0.1.3-1"; sha256="1cagcr5znhrg4fp96d79ly0z7bs3hhh3zfspclyfc88p2p3qsd96"; depends=[coda ggplot2 gridExtra Rcpp RcppArmadillo]; }; diagmeta = derive2 { name="diagmeta"; version="0.2-0"; sha256="1qdpsn0c4g459p8p90p2a9fghiwjqqmmanz3zsa5a3lv7zxmk496"; depends=[lme4 meta]; }; diagonals = derive2 { name="diagonals"; version="0.4.0"; sha256="03n6lm0hkgylswgj1qlgrjigm7basl5frip99mxx19mvaqa3bhqy"; depends=[]; }; diagram = derive2 { name="diagram"; version="1.6.4"; sha256="0f6ffprn5k0ir1s7m9s7izc64aa17r3gnygagz5bihrlsvawaavw"; depends=[shape]; }; + dials = derive2 { name="dials"; version="0.0.1"; sha256="09bi7smr1cfhnm42n31bjpxni74nay34a1vkvqcfc587g5i5x5bq"; depends=[dplyr glue purrr rlang scales tibble]; }; diaplt = derive2 { name="diaplt"; version="1.3.0"; sha256="1kkqhkv3s8rrpqd05jidjdnqmlnb3s9f8rr34rfqj7k4nh0qzzcz"; depends=[]; }; dice = derive2 { name="dice"; version="1.2"; sha256="0gic7lqnsdmwv3dbzwwmcwdfyfqlq8kpr2pciqphd1j2ligzwl3s"; depends=[gtools]; }; diceR = derive2 { name="diceR"; version="0.5.1"; sha256="0r3sj6qkkj6yqz21jcbjylqsr8n6yhghix2568gffckcijzgppar"; depends=[abind apcluster assertthat blockcluster caret class cli clue cluster clusterCrit clValid dbscan dplyr e1071 flux ggplot2 gplots Hmisc infotheo kernlab klaR kohonen magrittr mclust NMF progress purrr quantable RankAggreg RColorBrewer Rcpp Rtsne sigclust stringr tibble tidyr]; }; dichromat = derive2 { name="dichromat"; version="2.0-0"; sha256="1l8db1nk29ccqg3mkbafvfiw0775iq4gapysf88xq2zp6spiw59i"; depends=[]; }; dicionariosIBGE = derive2 { name="dicionariosIBGE"; version="1.6"; sha256="1rss1ydhcn6sma2lmlpq6s0h3dglwc20w499x1jzkcjnzc1rc7gl"; depends=[]; }; - did = derive2 { name="did"; version="1.0.0"; sha256="0fgwassb8m92iij78f045fl8441f1x9dhf4hnc93wl16yv5hh7g7"; depends=[BMisc formula_tools ggplot2 gridExtra knitr MASS pbapply]; }; + did = derive2 { name="did"; version="1.2.0"; sha256="18x8h50zph7xahqd2d9q1269ch8lgzcl5lflhl7860v3yk947zpa"; depends=[BMisc ggplot2 gridExtra knitr MASS pbapply]; }; didrooRFM = derive2 { name="didrooRFM"; version="1.0.0"; sha256="12clfnbm56jwldw0afb0nb0argnd97mx7369jiywhxy0p4xqibqq"; depends=[dplyr]; }; dief = derive2 { name="dief"; version="1.1"; sha256="0x3dwlfi130wmbsmm8vf66qxqn001b07yaiq6mp1s707dnl131mc"; depends=[flux fmsb ggplot2 plyr]; }; dielectric = derive2 { name="dielectric"; version="0.2.3"; sha256="1p1c0w7a67zxp1cb99yinylk5r1v89mmpfybcy94ydydhydbhivk"; depends=[]; }; @@ -5746,20 +5999,20 @@ in with self; { diffMeanVar = derive2 { name="diffMeanVar"; version="0.0.6"; sha256="0zivbd22hp0biy4vnjh21f4djfg5bl9az0wlhn47rk7fw65rgipb"; depends=[Biobase lawstat MASS methylumi missMethyl]; }; diffMeshGP = derive2 { name="diffMeshGP"; version="0.1.0"; sha256="1dc37hxh3fi27gw11kij57j78p87bza77s82niagdv6dqhldj5a4"; depends=[]; }; diffdepprop = derive2 { name="diffdepprop"; version="0.1-9"; sha256="0mgrm1isr26v2mcm6fkzc7443ji00vpnqmw4zngx81n7442b3cl2"; depends=[gee PropCIs rootSolve]; }; - diffdf = derive2 { name="diffdf"; version="1.0.0"; sha256="1qb27pkjs9bapwgqlb1kablcz54hs4cg0mmf2sisl1b8q4j68q96"; depends=[tibble]; }; - diffeR = derive2 { name="diffeR"; version="0.0-4"; sha256="08g21h3yq8rm2i6ah364nfadg7hnghc21jnpi5aqwzqyd2v93b67"; depends=[ggplot2 raster rgdal]; }; + diffdf = derive2 { name="diffdf"; version="1.0.1"; sha256="05kl841h9lcirp874g7ny1xjijd1dpdqxwyzwwqwpcvibf69pprm"; depends=[tibble]; }; + diffeR = derive2 { name="diffeR"; version="0.0-5"; sha256="1r1klvi83qp5xaxna3l2v48zjj5ngfcrq535m1crnmsjj4iwqilv"; depends=[ggplot2 raster reshape2 rgdal]; }; diffee = derive2 { name="diffee"; version="1.1.0"; sha256="01lb1prz70mxgymhhsvx48kbfy69xyyaabsmfhf28af9wfb89662"; depends=[igraph pcaPP]; }; diffeqr = derive2 { name="diffeqr"; version="0.1.1"; sha256="1zvjl2i38nyhk63bncqc5cva1m40sm692w7a36qc455s2jnskfh8"; depends=[JuliaCall stringr]; }; - diffobj = derive2 { name="diffobj"; version="0.1.10"; sha256="1y3fijswy9fw7q9xdv8cz9vm279av2hlzwbq8fc8lffwrbfl1zs1"; depends=[crayon]; }; + diffobj = derive2 { name="diffobj"; version="0.1.11"; sha256="1aqdb4q3zixf2xg9q0387vp2xrmfwl7h5j5wnlr0mxwbxv8423ly"; depends=[crayon]; }; diffpriv = derive2 { name="diffpriv"; version="0.4.2"; sha256="12q2v93369bshid83rsy1csbr9ay6rfpd8zdxm12zi7py3f9sjs8"; depends=[gsl]; }; diffr = derive2 { name="diffr"; version="0.1"; sha256="0ydwnpyzirynffsnvip667y0jqzy7yfqlfpqhb38xvmd9rmwfbp8"; depends=[htmlwidgets]; }; diffractometry = derive2 { name="diffractometry"; version="0.1-10"; sha256="09mkqg6avky26c2dsnhpcmby76hfqg0pwmnjhkbp4px2k6c9inrc"; depends=[]; }; diffrprojects = derive2 { name="diffrprojects"; version="0.1.14"; sha256="1mnqf5zs1w8dx9y5iwn4blyzb9j60ayzc04zxj5l8804nd527n25"; depends=[dplyr hellno magrittr R6 Rcpp RSQLite rtext stringb stringdist]; }; diffrprojectswidget = derive2 { name="diffrprojectswidget"; version="0.1.5"; sha256="1h69mc1wayi80vz4b9cqydylf4kp9mxsigv05r0f903pqakdrzcw"; depends=[diffrprojects dplyr hellno htmlwidgets jsonlite magrittr tidyr]; }; diffusion = derive2 { name="diffusion"; version="0.2.7"; sha256="1j9s9vw5sc4k956bk4yp3bf4fnp7lhhkwcvlzvsh1w4dyaj8l35h"; depends=[dfoptim nloptr systemfit]; }; - diffusionMap = derive2 { name="diffusionMap"; version="1.1-0"; sha256="1l985q2hfc8ss5afajik4p25dx628yikvhdimz5s0pql800q2yv3"; depends=[igraph Matrix scatterplot3d]; }; + diffusionMap = derive2 { name="diffusionMap"; version="1.1-0.1"; sha256="11l4kbciawvli5nlsi4qaf8afmgk5xgqiqpdyhvaqri5mx0zhk5j"; depends=[igraph Matrix scatterplot3d]; }; diffusr = derive2 { name="diffusr"; version="0.1.4"; sha256="1f3h387kblw1xzdnxphwgfl1n7f6i07kk7kfslvbfxkalbish6ii"; depends=[igraph Rcpp RcppEigen]; }; - digest = derive2 { name="digest"; version="0.6.15"; sha256="1ia4ak956gnn0f5aqhwgam6g9z6f1y57zz8jv45jc8h79yxp8bl8"; depends=[]; }; + digest = derive2 { name="digest"; version="0.6.18"; sha256="0k3iv0r8wy8w7zchmgrnrqv3bc149075j4817kf0q521vi4f6vbj"; depends=[]; }; digitalPCR = derive2 { name="digitalPCR"; version="1.1.0"; sha256="0hwqq84yr1hnvf4bygc5425887dhqjjjyy1ils71iavcal04s8pb"; depends=[]; }; digitize = derive2 { name="digitize"; version="0.0.4"; sha256="1qw4x4z9vrs79sd9b2daw668nc6nvjl4qhayfqmd87yxa2ydv6x0"; depends=[readbitmap]; }; dils = derive2 { name="dils"; version="0.8.1"; sha256="1q6ba9j14hzf7xy895mzxc6n9yjgind55jf350iqscwzxf7ynp33"; depends=[igraph Rcpp]; }; @@ -5767,13 +6020,15 @@ in with self; { dina = derive2 { name="dina"; version="1.0.2"; sha256="1dgjny7ik2g15zbi3ywl0xbab6vnv5qkxfrb4x79w7lic5m90ldc"; depends=[Rcpp RcppArmadillo]; }; dinamic = derive2 { name="dinamic"; version="1.0"; sha256="0mx72q83bbwm10ayr3f1dzwr5wgz7gclw7rh39yyh95slg237nzr"; depends=[]; }; dineq = derive2 { name="dineq"; version="0.1.0"; sha256="1xrhrdc970f7hm9xng9z7xmshnmmz89cn3gmnyabzprx44ccr9sl"; depends=[boot Hmisc]; }; + dint = derive2 { name="dint"; version="2.0.0"; sha256="1rrkf1j7vdnxskmjzh41shwxmcy624qrhipfpdvp76ijf1hf32vk"; depends=[]; }; diptest = derive2 { name="diptest"; version="0.75-7"; sha256="0rcgycgp0bf8vhga1wwgfcz3pqs5l26hgzsgf2f97dwfna40i1p1"; depends=[]; }; directPA = derive2 { name="directPA"; version="1.3"; sha256="0hcs56y69gdkfyk2xl0vxh01c19s6z1lfv02g056wxr24qfsx08c"; depends=[calibrate rgl]; }; directlabels = derive2 { name="directlabels"; version="2018.05.22"; sha256="0xcpc56ssb9430b0xcdhayk3qaak2qcakyss2pz14y5w2027hblv"; depends=[quadprog]; }; + directotree = derive2 { name="directotree"; version="1.0.0"; sha256="1yv703mb3fnvjxr2rrxvb8x869hbbjx4l94qbbsmy0ssknayq60y"; depends=[collapsibleTree data_tree]; }; dirichletprocess = derive2 { name="dirichletprocess"; version="0.2.1"; sha256="0ip7mcjddqg7z9hqrvbxixvkqp9j4d92zgpk6hn6acd4fxhb17r6"; depends=[ggplot2 gtools mvtnorm]; }; dirmcmc = derive2 { name="dirmcmc"; version="1.3.3"; sha256="117p3jvinmha7a2phcpzq38ig05kcranp15xbxqvv0cgh3c95fjr"; depends=[mcmcse]; }; dirmult = derive2 { name="dirmult"; version="0.1.3-4"; sha256="1r9bhw1z0c1cgfv7jc0pvdx3fpnwplkxwz8j8jjvw14zyx803rnz"; depends=[]; }; - discSurv = derive2 { name="discSurv"; version="1.3.1"; sha256="0vq3g42xy97ksgsghhz232spkbkr2zs8i9nm7xwdabysi9fgqdsv"; depends=[functional mgcv mvtnorm]; }; + discSurv = derive2 { name="discSurv"; version="1.3.4"; sha256="0xawvadgy5lkzhk60kb4ga1gh4niqpr9p6wxgrp88mbwp7q600kl"; depends=[functional mgcv mvtnorm]; }; discgolf = derive2 { name="discgolf"; version="0.2.0"; sha256="07clh1awnibgrh7vl4a51r8dbya2rbmicm8v8x8mq8h8am2b3j0s"; depends=[crul jsonlite xml2]; }; disclap = derive2 { name="disclap"; version="1.5"; sha256="0piv9gxhxcd4pbh5qjn9c3199f32y3qiw5vy8cr77ki70dnmr66n"; depends=[]; }; disclapmix = derive2 { name="disclapmix"; version="1.7"; sha256="11qkk5bl5x3axyfdzm1hw522g643mmvk5qg7g3sc3licfvsn32i1"; depends=[cluster disclap MASS Rcpp RcppProgress]; }; @@ -5784,10 +6039,10 @@ in with self; { discretecdAlgorithm = derive2 { name="discretecdAlgorithm"; version="0.0.5"; sha256="1q4g455jjg293yxdwdppw04ah15idk5j233x2kbqv0jni4v0l2bf"; depends=[igraph Rcpp RcppEigen sparsebnUtils]; }; discretization = derive2 { name="discretization"; version="1.0-1"; sha256="00vq2qsssnvgpx7ihbi9wcafpb29rgv01r06fwqf9nmv5hpwqbmp"; depends=[]; }; discrimARTs = derive2 { name="discrimARTs"; version="0.2"; sha256="088v4awic4bhzqcr7nvk2nldf8cm1jqshg2pzjd2l2p1cgwmlxib"; depends=[RUnit]; }; - diseasemapping = derive2 { name="diseasemapping"; version="1.4.2"; sha256="065ndvpx3q9ycxfjl1f2iy3s23d7qf27s1qz31ppx0n929jynn6n"; depends=[sp]; }; + diseasemapping = derive2 { name="diseasemapping"; version="1.4.6"; sha256="16y2w8qjq442qdbqlrg3s2mn53rlcipl22m3q168gda5klm4f7sl"; depends=[sp]; }; diskImageR = derive2 { name="diskImageR"; version="1.0.0"; sha256="1r19k5fdjn6vkn11p5df77fnxfqaz3nciiaai0f3pr2bgpfppzka"; depends=[subplex zoo]; }; dismo = derive2 { name="dismo"; version="1.1-4"; sha256="1j4pzbyvn8msi3k2y79nc6pqlrald46168ibznjwrr6rdiqhy4gj"; depends=[raster sp]; }; - dispRity = derive2 { name="dispRity"; version="1.0.3"; sha256="1swix45fcr0hn21pvy2dwsnbr60bvsdjk8vwh432p0s69c372m3l"; depends=[ade4 ape geiger geometry geoscale paleotree phangorn phyclust vegan]; }; + dispRity = derive2 { name="dispRity"; version="1.2"; sha256="1dihcb5smsjl57562vnm9w63izbzl22vr0ky5far66cxz0y6di2k"; depends=[ade4 ape geiger geometry geoscale mnormt paleotree phangorn phyclust vegan]; }; disparityfilter = derive2 { name="disparityfilter"; version="2.2.3"; sha256="0dkk3qws631mf0g02di5rsrvh5954cykysyri0g8aqgik0j9dg06"; depends=[igraph]; }; displayHTS = derive2 { name="displayHTS"; version="1.0"; sha256="0mqfdyvn2c5c3204ykyq29ydldsq0kb3a1d7mrzqr7cvrj1ahlqa"; depends=[]; }; dispmod = derive2 { name="dispmod"; version="1.2"; sha256="16r6is0pchzc9mxpz0c44f72j76vsh3j9damalcxajrha06dkdq4"; depends=[]; }; @@ -5795,119 +6050,126 @@ in with self; { dissUtils = derive2 { name="dissUtils"; version="1.0"; sha256="00fzlmkdfw2s3k824wp2pk3v7cvxnywi1hfp86g4mm95z2qlw9br"; depends=[]; }; dissever = derive2 { name="dissever"; version="0.2-3"; sha256="1lgs5nmv3lpm4gsryxvcwiwibvvg9flv23q8maisp77x49c18qcp"; depends=[boot caret dplyr foreach magrittr plyr raster sp viridis]; }; distance_sample_size = derive2 { name="distance.sample.size"; version="0.0"; sha256="0hlf3kp34rg1gnkxp4k3rnv0shv4fpgb0rhx3a6x5692lhyigbcs"; depends=[MASS]; }; - distances = derive2 { name="distances"; version="0.1.2"; sha256="17872h4jw6cgdk40vczjlygnays2v0wdh64mz5isk7zkvqs0x1ld"; depends=[]; }; + distances = derive2 { name="distances"; version="0.1.4"; sha256="0axh75s0l478nlgd2sd1nxbmpx0iw1wi5aaa6b24hy1v3bizazbn"; depends=[]; }; distcomp = derive2 { name="distcomp"; version="1.0-1"; sha256="0f69bxw52ai39dmkmfvrs0lbibcgmv6n849xa9xgd2jm5mvbc58f"; depends=[digest httr jsonlite R6 shiny stringr survival]; }; distcrete = derive2 { name="distcrete"; version="1.0.3"; sha256="0sa6z2mpmk51ig1r7bmpbyv2jd8z6z7mixki2vlq1kybg8cx3wmi"; depends=[]; }; + distdichoR = derive2 { name="distdichoR"; version="0.1-1"; sha256="0v19m3n1jgipg65yrv75rm4v27b5aq58cbsmbp7lxvfxmj5ra328"; depends=[boot emmeans nlme sn]; }; distdrawr = derive2 { name="distdrawr"; version="0.1.3"; sha256="1c8wznfml8k5gwyanfg7rqr22a96xx8rgm7f4z3bv5gsgsbps49y"; depends=[]; }; distfree_cr = derive2 { name="distfree.cr"; version="1.5.1"; sha256="0h7cywxnasxmqnl9f2f9wp4viwvv72hjx2drr78prqy3nn3lvqwx"; depends=[]; }; distillery = derive2 { name="distillery"; version="1.0-4"; sha256="1m0pgmlvk7bsb6q3kxagnq422babk61sf73naavac68v8x2q8fix"; depends=[]; }; + disto = derive2 { name="disto"; version="0.2.0"; sha256="09pafy8y1ifgglqmal32dy34acx06ypsq2bgwsn6fjiqr9kw401j"; depends=[assertthat broom dplyr factoextra fastcluster fastmatch ggplot2 pbapply proxy tidyr]; }; distory = derive2 { name="distory"; version="1.4.3"; sha256="1mszk8fv1z46d7y1q37mhq9b5yk39w2i9rq6mgdf03afdslrmrip"; depends=[ape]; }; - distr = derive2 { name="distr"; version="2.6.2"; sha256="1x118v7ycw33mkwy9frw38yn7a6ihghpssz6r2nj5766ab93i89s"; depends=[MASS sfsmisc startupmsg SweaveListingUtils]; }; - distrDoc = derive2 { name="distrDoc"; version="2.6"; sha256="19yjns5cv2jp551kbld30xmdzljxr0lj5gps0lxfv8d7mrj09kf7"; depends=[distr distrEx distrMod distrSim distrTeach distrTEst MASS RandVar startupmsg SweaveListingUtils]; }; - distrEllipse = derive2 { name="distrEllipse"; version="2.6.2"; sha256="1rhpnwsml7vs2nkn4q4203fi0qwfc4pxgva0b4z30zzhywb0p3hg"; depends=[distr distrEx distrSim mvtnorm setRNG startupmsg]; }; - distrEx = derive2 { name="distrEx"; version="2.6.1"; sha256="088a7pvkpndwdg22gmh6ypi5s2fw2gqc47njlvw5gyxfdm9gcdy5"; depends=[distr startupmsg]; }; - distrMod = derive2 { name="distrMod"; version="2.6.1"; sha256="1i7b08i8zjv2k4p2j1nlqbyjrcapf52k2my83i75hcrjqdy8r3sv"; depends=[distr distrEx MASS RandVar sfsmisc startupmsg]; }; - distrRmetrics = derive2 { name="distrRmetrics"; version="2.6"; sha256="077ryxl6l6fql81nsl7dm16pawsqd0l6ljfpkrnzjab4mljqaxgp"; depends=[distr fBasics fGarch startupmsg]; }; - distrSim = derive2 { name="distrSim"; version="2.6"; sha256="1kq85ivnw4mplpr2jmc2w19kvk0d1wffz6laypay2j5gyd8fm44x"; depends=[distr setRNG startupmsg]; }; - distrTEst = derive2 { name="distrTEst"; version="2.6"; sha256="1c0xwpyr5gs89psiflcz5dplsb1g9r651jiqg8nxcqa05r9kyhkr"; depends=[distrSim setRNG startupmsg]; }; + distr = derive2 { name="distr"; version="2.7.0"; sha256="0z822y1mj8h368k1iclnaviz6m6wgnl97jwgisb8qah98f4dbmwh"; depends=[MASS sfsmisc startupmsg]; }; + distrDoc = derive2 { name="distrDoc"; version="2.7.1"; sha256="0zbj550lflq0i7i900cb3ybrcik40ahsjz24yf5jnxvx397glsfx"; depends=[distr distrEx distrMod distrSim distrTeach distrTEst MASS RandVar startupmsg]; }; + distrEllipse = derive2 { name="distrEllipse"; version="2.7.0"; sha256="0k6jicf8411jzyv9hi63qng9mq6bbil2qgwy7lijgvy2dr4d0niw"; depends=[distr distrEx distrSim mvtnorm setRNG startupmsg]; }; + distrEx = derive2 { name="distrEx"; version="2.7.0"; sha256="0mhf79fxwvy8x261ckfz93z05f2dn8p70hpdzn47xyh7z8dg38gd"; depends=[distr startupmsg]; }; + distrMod = derive2 { name="distrMod"; version="2.7.0"; sha256="14c2djk3faw4z1b4fgwpk35qfyvix7b5jcaglc9g6rx43f8h81hp"; depends=[distr distrEx MASS RandVar sfsmisc startupmsg]; }; + distrRmetrics = derive2 { name="distrRmetrics"; version="2.7.0"; sha256="01z3vm5qfnrp5qd518f7h7dynjjg3am0hrk7zqv8kjzxgsisgnq9"; depends=[distr fBasics fGarch startupmsg]; }; + distrSim = derive2 { name="distrSim"; version="2.7.0"; sha256="1fihq54kng7icqs6z27rdrykql00c33f0d8cznbizjsz6ipm94d6"; depends=[distr setRNG startupmsg]; }; + distrTEst = derive2 { name="distrTEst"; version="2.7.0"; sha256="19w92php04fp3c4ip7zz2zs210h4dp9nj3g3ddq26hlh7ng9kk85"; depends=[distrSim setRNG startupmsg]; }; distrTeach = derive2 { name="distrTeach"; version="2.6.1"; sha256="0x60xlij1m9q7xhi9vnf61vb2px9aah8iqaki6d87c1pxylmqnvr"; depends=[distr distrEx startupmsg]; }; distrom = derive2 { name="distrom"; version="1.0"; sha256="0wylw7yaylf5j8cy8g45jrw91mwx6w0i7vf9ysnj5kxyznq1gl6y"; depends=[gamlr Matrix]; }; distrr = derive2 { name="distrr"; version="0.0.4"; sha256="0nywvgcbk2i2n2qa80yk68zikl2fs7nybhq540808rjksldh9pvy"; depends=[dplyr lazyeval magrittr tidyr]; }; + divDyn = derive2 { name="divDyn"; version="0.6.1"; sha256="04l342jz34q3fcmibdj0zr53w6zp65p3al0w1qd8diq09z1388gc"; depends=[Rcpp]; }; divagis = derive2 { name="divagis"; version="1.0.0"; sha256="1kcz7i3h9xxpqhlq0rl08pgcwd16ygjjmm0jjv9knn2ggc3j1jzz"; depends=[rgdal sp]; }; diveMove = derive2 { name="diveMove"; version="1.4.4"; sha256="0mq3nkcn1w8mry9lda6fkycb1a5qmkyzpckwxbrvsyc5kyyx755c"; depends=[caTools geosphere KernSmooth quantreg uniReg]; }; diveRsity = derive2 { name="diveRsity"; version="1.9.90"; sha256="11pfq3syvjmfwfimjc2jnlprcnynvargr4yjd8h0aa6qzgdrrx5q"; depends=[ggplot2 qgraph Rcpp shiny]; }; diverse = derive2 { name="diverse"; version="0.1.5"; sha256="10kmx3qv58xhqs1icsxqq0y0cm8y2hx9ysb65brd3hhg33alzvk3"; depends=[foreign proxy reshape2]; }; diversitree = derive2 { name="diversitree"; version="0.9-10"; sha256="0gh4rcrp0an3jh8915i1fsxlgyfk7njywgbd5ln5r2jhr085kpz7"; depends=[ape deSolve Rcpp subplex]; }; - divest = derive2 { name="divest"; version="0.6.0"; sha256="0j7glxg2sp1x11mlfrl0fciqp9w6jwf2j7s1sxchaw1b2rm0nklm"; depends=[Rcpp RNifti]; }; + divest = derive2 { name="divest"; version="0.7.1"; sha256="0ih61l7lncs6lzszwshxnnn9wvpac5zfdaamax9hqkz171zq2gnw"; depends=[Rcpp RNifti]; }; divo = derive2 { name="divo"; version="1.0.0"; sha256="0xy4yxvx2grskdzb5z73mhgrq0nfhdkm2hxahdns7pb1fgajxyjx"; depends=[cluster]; }; dixon = derive2 { name="dixon"; version="0.0-6"; sha256="1prvr16a9n7qyaznir2bl7mg6nlvbdv9pk75p3xipzjg36hwyam8"; depends=[spatstat splancs]; }; dkDNA = derive2 { name="dkDNA"; version="0.1.1"; sha256="0ycyzn5bmhjl5idp0lndffkninpm9n23wrkrzi59ac8z8ghsnhf4"; depends=[]; }; - dkanr = derive2 { name="dkanr"; version="0.1.1"; sha256="15vvfvhs715aczb0g1prgvynzx0xcmqvq7ancqcjw89al40zaiyc"; depends=[assertthat dplyr httr jsonlite purrr stringr tibble]; }; + dkanr = derive2 { name="dkanr"; version="0.1.2"; sha256="1936jhj95cqsa6n8yw7zg8hh8m4ld5ajgwb94r5w5w8lfwdficli"; depends=[assertthat dplyr httr jsonlite purrr stringr tibble]; }; dlib = derive2 { name="dlib"; version="1.0.3"; sha256="1is8j1gwf22n7yixg40rb6p4mrnbzijwfjl6vsniq8qkyy7z8k32"; depends=[Rcpp]; }; dlm = derive2 { name="dlm"; version="1.1-5"; sha256="1aksm66sfa7ipl5xgs4j5giac7q2m744wjl40mva56xn6i674h4r"; depends=[]; }; dlmap = derive2 { name="dlmap"; version="1.13"; sha256="0s6wlkggkm3qndwyvw72xv1n0mcjb7ss3ajbq2ll6rv30splq0db"; depends=[ibdreg mgcv nlme qtl wgaim]; }; - dlnm = derive2 { name="dlnm"; version="2.3.4"; sha256="08k9x29iakgnzf4zbj6bgv6i4812mhbgraxm468wvv8ia574dm1m"; depends=[mgcv nlme tsModel]; }; - dlookr = derive2 { name="dlookr"; version="0.3.0"; sha256="00yxv2wfprqpsjd4c9q330agy1q3iqi4lnqk8xz62bnqizb0v3hm"; depends=[classInt corrplot DMwR dplyr ggplot2 gridExtra kableExtra knitr magrittr mice moments prettydoc purrr randomForest RcmdrMisc RColorBrewer rlang rmarkdown rpart smbinning tibble tidyr tidyselect tinytex xtable]; }; - dlsem = derive2 { name="dlsem"; version="2.3"; sha256="1v7p6d2ylpvq69sbgicznmzsfsv08nivgj6dv6lyw7059anilgkn"; depends=[graph gRbase Rgraphviz]; }; + dlnm = derive2 { name="dlnm"; version="2.3.6"; sha256="0yh964536zh57pcj6q2b172j57pdk4jzf78281jym81j6qxwf2fb"; depends=[mgcv nlme tsModel]; }; + dlookr = derive2 { name="dlookr"; version="0.3.2"; sha256="0cm48nzj5zbs2db39w9f2gk9wh813ib48hnfhcbp8f833xd5x72n"; depends=[classInt corrplot dbplyr DMwR dplyr ggplot2 gridExtra kableExtra knitr magrittr mice moments prettydoc purrr randomForest RcmdrMisc RColorBrewer rlang rmarkdown rpart smbinning tibble tidyr tidyselect tinytex xtable]; }; + dlsem = derive2 { name="dlsem"; version="2.4"; sha256="1q4acqlnirr5mk1k4ljzkhmx23a76w7gj98qd3c2s3qlqrsf6xvw"; depends=[graph Rgraphviz]; }; dlstats = derive2 { name="dlstats"; version="0.1.0"; sha256="0s92rdpw3m534wgjaic4srsp9i1pa3ibfmr4h7p3ly51zhza6l5h"; depends=[ggplot2 jsonlite magrittr RColorBrewer scales]; }; - dma = derive2 { name="dma"; version="1.3-1"; sha256="0azask61cmkklly32nbpw9rq03v0g976i7shhvawxj20dh4h1jz9"; depends=[MASS mnormt]; }; + dma = derive2 { name="dma"; version="1.4-0"; sha256="003snr09hazszwqnvjrbv8vyz6ihgcfcfhrlshg451dddn920615"; depends=[MASS]; }; dml = derive2 { name="dml"; version="1.1.0"; sha256="0z1dalgxh5nhrac49vh60d5awzjylc8b8mn5fk379c324milm59l"; depends=[lfda MASS]; }; - dmm = derive2 { name="dmm"; version="2.1-4"; sha256="0qwgsv128gqapnc2xi3yas51l9d1gylgs6ww0gc3d8mavlhkz4b1"; depends=[MASS Matrix nadiv pls robustbase]; }; + dmm = derive2 { name="dmm"; version="2.1-5"; sha256="1i94bsgc12ysivpy9mdmzcdfki1f84x036danki7ynrbym2b3c7a"; depends=[MASS Matrix nadiv pls robustbase]; }; dmt = derive2 { name="dmt"; version="0.8.20"; sha256="0rwc8l9k2y46hslsb3y8a1g2yjxalcvp1l3v7jix0c5kz2q7917w"; depends=[MASS Matrix mvtnorm]; }; dmutate = derive2 { name="dmutate"; version="0.1.2"; sha256="06gr49j5jz6ns1zydwsqysgkigi2sbm4hdd2jbb82f05rd9spyf3"; depends=[dplyr MASS]; }; dna = derive2 { name="dna"; version="1.1-1"; sha256="0gw70h1j67h401hdvd38d6jz71x1a6xlz6ziba6961zy6m3k5xbm"; depends=[]; }; - dnet = derive2 { name="dnet"; version="1.1.3"; sha256="1av4kbcbhpj1ivz6ln26p80z5fd170971mrcy59zm67h6kdi56az"; depends=[graph igraph Matrix Rgraphviz supraHex]; }; + dnet = derive2 { name="dnet"; version="1.1.4"; sha256="0xccb50a85d9fcxfg0shxf430hzgjyh4qgb3js4sgzi02iagim58"; depends=[graph igraph Matrix Rgraphviz supraHex]; }; dng = derive2 { name="dng"; version="0.2.1"; sha256="0yi1fs4yvlsy3j128l7s5kwq8mhdd5fr74y2bzj7cjrxi7wgz2hg"; depends=[Rcpp]; }; - dnr = derive2 { name="dnr"; version="0.3.2"; sha256="0f5xahd86x196mg7c9zrhxj7c8cg7mrnd4nzyr02xcym6cff6vqm"; depends=[arm ergm glmnet igraph network sna]; }; - doBy = derive2 { name="doBy"; version="4.6-1"; sha256="1y02awzid23bxz8hx6j8pxd6i7jaq8pdw3k60rag8y6m69incrw5"; depends=[dplyr magrittr MASS Matrix plyr]; }; + dnr = derive2 { name="dnr"; version="0.3.4"; sha256="0hzaa308pppq2cqpb067f3y3nyv1p2xdmgy3dykf90psnn5v011p"; depends=[arm ergm glmnet igraph network sna]; }; + doBy = derive2 { name="doBy"; version="4.6-2"; sha256="02vbv9nfgywg6lsiialkmfnax5z3rkyb9nr8j9l2cp8xi6ml95mb"; depends=[dplyr magrittr MASS Matrix plyr]; }; doFuture = derive2 { name="doFuture"; version="0.6.0"; sha256="04pvs2h1ibdbl6cph30rvdn5vzj9afllvh8f0iy64pgy83vls790"; depends=[foreach future iterators]; }; doMC = derive2 { name="doMC"; version="1.3.5"; sha256="1vfrykvfvsyq12mypd266867ml1dcwc3rj5k9c3wrn5bddcm88kr"; depends=[foreach iterators]; }; doMPI = derive2 { name="doMPI"; version="0.2.2"; sha256="0ahwm17p3gq1yvc8v6sr6sb8z7i6zws8d1pf46qynl0gd4amg938"; depends=[foreach iterators Rmpi]; }; - doParallel = derive2 { name="doParallel"; version="1.0.11"; sha256="0sppgxk3d8mfsrb3cjdyn0mv0s4i7pcy8g8c3cjzbr6k8vmx5jsc"; depends=[foreach iterators]; }; + doParallel = derive2 { name="doParallel"; version="1.0.14"; sha256="01qjs4iw9f1kgymcypj0m2s4pvgqhxaycpli0fb8lq3dc0vpzfyb"; depends=[foreach iterators]; }; doRNG = derive2 { name="doRNG"; version="1.7.1"; sha256="1sb75aqkliprglfxc4x4wds6alqgzhvl2n812g1d32a88ra3slr7"; depends=[foreach iterators pkgmaker rngtools]; }; doRedis = derive2 { name="doRedis"; version="1.1.1"; sha256="10ldfzq6m83b9w24az9bf5wbfm6y9gi233s8qgsk4dnr84n3nizx"; depends=[foreach iterators rredis]; }; doSNOW = derive2 { name="doSNOW"; version="1.0.16"; sha256="13ir4a8252h4yvp5ir9xnwack1kn58i4ny6sf2qdc12zspn3850n"; depends=[foreach iterators snow]; }; dobson = derive2 { name="dobson"; version="0.3"; sha256="1vhakkg0276vq0haww5cmm8dbp20bc4874mihqasxkfylqpp6hz2"; depends=[]; }; docker = derive2 { name="docker"; version="0.0.2"; sha256="00zq4zmv2y6q069q92dn8db2bj96kfy7pv2s58q21dxkp1c4s6qg"; depends=[reticulate]; }; dockerfiler = derive2 { name="dockerfiler"; version="0.1.1"; sha256="17r8az17vkj46cljp0pa15xh9x2p5w85csm2hickfk2lyg2pbjnx"; depends=[attempt glue R6]; }; - docopt = derive2 { name="docopt"; version="0.4.5"; sha256="1pwng6018ls0hk785bs8yjwpzsqr2pcvzgpavqd9rw19n5lvzhxn"; depends=[stringr]; }; - docopulae = derive2 { name="docopulae"; version="0.3.5"; sha256="0k69ca3bjjr9q9v43ds3malwxnldizx0lr62286n0h2idqn63kfa"; depends=[]; }; + docopt = derive2 { name="docopt"; version="0.6.1"; sha256="06zknnd0c5s2y0hbddzdlr3m63ib783izpck6pgz7sjbab5pd068"; depends=[]; }; + docopulae = derive2 { name="docopulae"; version="0.4.0"; sha256="186mfiy4ygx6spnv7yrm5h0k6nf2g1xhk1l05iij39j5al5d9j21"; depends=[]; }; docstring = derive2 { name="docstring"; version="1.0.0"; sha256="19z5frhxbdc5c4vrkckgqbh9mx4d9w1icw8szsw9yadvbg48nlhl"; depends=[roxygen2]; }; docuSignr = derive2 { name="docuSignr"; version="0.0.3"; sha256="0q90z31svbdnvylfr0yj2f0gahvpi089c1d5llvwqy8qc5p9fbqw"; depends=[httr jsonlite magrittr]; }; documair = derive2 { name="documair"; version="0.6-0"; sha256="1pphcbx90n9xn8a7gvfrwzfapwqgpbl3gg2grm7chfxgcp7i99i2"; depends=[]; }; - document = derive2 { name="document"; version="3.0.1"; sha256="1pmms1mrldjqsd2zrmpyxz86xykgq1ld4l4gv9gd1ycd7r8v0f8p"; depends=[callr checkmate desc rcmdcheck roxygen2 rstudioapi withr]; }; - docxtools = derive2 { name="docxtools"; version="0.1.3"; sha256="0c8harmlil1cqg74a0n2b544gghdl71y0qrcx34yk6ky2f8bl4s3"; depends=[dplyr ggplot2 lubridate magrittr pander purrr rlang stringr tidyr]; }; - docxtractr = derive2 { name="docxtractr"; version="0.2.0"; sha256="197j57ab8x960b1yfq6xp8fwmq51xs04nf0cb16r161h4bcmgs2j"; depends=[dplyr purrr tibble xml2]; }; - dodgr = derive2 { name="dodgr"; version="0.0.3"; sha256="161qy9iyszpb44v26zn6w4d7c9bw8pg7vwgqcba0k0xc5dnr2wjc"; depends=[igraph magrittr osmdata rbenchmark Rcpp sp]; }; + document = derive2 { name="document"; version="3.0.2"; sha256="0p5brpqbgcn1v1i51cvkqq3pg6v256d70zpsc48jj5x7f2mfz3jb"; depends=[callr checkmate desc rcmdcheck roxygen2 rstudioapi withr]; }; + docxtools = derive2 { name="docxtools"; version="0.2.0"; sha256="0mz71d4hppnp7i67a202x19hcgs99lbslkkfqa2k7npzl4dxj5sr"; depends=[dplyr ggplot2 lubridate purrr rlang stringr tidyr]; }; + docxtractr = derive2 { name="docxtractr"; version="0.5.0"; sha256="079lm7dbhnwx0aj4df777ws7dmhag2n9f4w17v146rkp2z2l4ym1"; depends=[dplyr httr purrr tibble xml2]; }; + dodgr = derive2 { name="dodgr"; version="0.1.1"; sha256="187530rrz8ij1wy21zf8drppqh1yml6q01q40b60pzkf1mqp3w5m"; depends=[igraph magrittr osmdata rbenchmark Rcpp RcppParallel sp]; }; doex = derive2 { name="doex"; version="1.0.0"; sha256="1d70pb0wxc47z401ya2awjpx0rgipicxgbvkhwinx2mg0jpa8kki"; depends=[]; }; domino = derive2 { name="domino"; version="0.3.1"; sha256="0f67w0z5jy82kgm3l1rji430ayigw30vmmwp3i1nz0xibsx7jxv4"; depends=[]; }; + doremi = derive2 { name="doremi"; version="0.1.0"; sha256="0qqg0kl806gsidcigwggpx1g5p691b4300dfipiv4cfxp0pl5r1k"; depends=[data_table ggplot2 lme4 lmerTest zoo]; }; dosresmeta = derive2 { name="dosresmeta"; version="2.0.1"; sha256="0qdalzdk7q4wx3vl5f3i64m8cb7vhi4pqzghar32j0a7l6gla04z"; depends=[mvmeta]; }; dostats = derive2 { name="dostats"; version="1.3.2"; sha256="15j9sik9j5pic5wrp0w26xkrhi337xkbikw0k7sa4yfimw6f84w5"; depends=[]; }; - dotCall64 = derive2 { name="dotCall64"; version="0.9-5.2"; sha256="1jw0kyw95nivjimh25ri9sigqwlvk12kd45ydsh1yggigzc0k23k"; depends=[]; }; + dotCall64 = derive2 { name="dotCall64"; version="1.0-0"; sha256="1b8p7m3w0m7bp977c6jz74xkd611cxg11j49yza59k5fp338scb9"; depends=[]; }; dotenv = derive2 { name="dotenv"; version="1.0.2"; sha256="13i8dimrgq9nxmmrxr42pacsiylj6dilwpa8ldnrfp4cl9zgrqas"; depends=[]; }; dotwhisker = derive2 { name="dotwhisker"; version="0.5.0"; sha256="034pvkc59jdjl27wirgb2cv84ajw5y2if20njzzp87nd4f9bb6br"; depends=[broom dplyr ggplot2 ggstance gtable purrr rlang stringr]; }; doubcens = derive2 { name="doubcens"; version="1.1"; sha256="1hn65n67by3xqbcnaf5jja5pli0g6wpbbz2sfzd7i2nms7kiywhp"; depends=[]; }; + double_truncation = derive2 { name="double.truncation"; version="1.1"; sha256="03h1km4n8sasc3jdz9gal7yw170b47hgfziz35g9x3qw96lvanpg"; depends=[]; }; downloader = derive2 { name="downloader"; version="0.4"; sha256="1axggnsc27zzgr7snf41j3zd1vp3nfpmq4zj4d01axc709dyg40q"; depends=[digest]; }; - downscale = derive2 { name="downscale"; version="2.0-3"; sha256="0jvzvmwhpdr7ygcxky4yl1ldb843hrmnzhmnvl0694mmswwqsf8l"; depends=[cubature minpack_lm raster Rmpfr sp]; }; + downscale = derive2 { name="downscale"; version="3.0-1"; sha256="0kmv4d5fa6mmhmbfqfxzk1gv55j15d7madsdqi8470bwh0kkya4y"; depends=[cubature minpack_lm raster Rmpfr sp]; }; downsize = derive2 { name="downsize"; version="0.2.2"; sha256="18b9shd79z0bsdnp0apqqwv6c73j4wnfiv41ywqz761nmxbldxbn"; depends=[magrittr R_utils]; }; dpa = derive2 { name="dpa"; version="1.0-3"; sha256="0dmwi68riddi1q4b10c12wx6n7pqfmv30ix5x72zpdbgm72v343h"; depends=[igraph sem]; }; dparser = derive2 { name="dparser"; version="0.1.8"; sha256="1yx425s3iq03j043g41pyfp3cgmajb4qh50zirhd0qpplzwy8xj5"; depends=[digest]; }; - dpcR = derive2 { name="dpcR"; version="0.4"; sha256="02j7fhhfq7p2wfcnr7rdy65v6dcvdym3nfyps7717p7b429chchc"; depends=[binom chipPCR dgof e1071 evd multcomp pracma qpcR rateratio_test readxl shiny signal spatstat]; }; dpglasso = derive2 { name="dpglasso"; version="1.0"; sha256="1mx28xbm2z2bxyp33wv2v6vgn1yfsdsa0bzjjdxasgd6lvr51myf"; depends=[]; }; dplR = derive2 { name="dplR"; version="1.6.8"; sha256="0rgdshkkvij177y7d432wx23ch6f54ns3w93a6fayb1pl936rh7f"; depends=[animation digest lattice Matrix matrixStats plyr png R_utils stringi stringr XML]; }; dplRCon = derive2 { name="dplRCon"; version="1.0"; sha256="10xnawgnhxp5y949fxs1vvadc1qz2ldy0s9w9w7kf6iqh59d35sw"; depends=[]; }; - dplyr = derive2 { name="dplyr"; version="0.7.6"; sha256="0c43h13s5mr0fklikbbm89gs6z5n66rkjzdv6w3w6kl5af5wr2fl"; depends=[assertthat BH bindrcpp glue magrittr pkgconfig plogr R6 Rcpp rlang tibble tidyselect]; }; + dplyr = derive2 { name="dplyr"; version="0.7.7"; sha256="196lwck3i3m25jnn1f1nrda9svnjqqi89s0is79gbrphamddnlq5"; depends=[assertthat BH bindrcpp glue magrittr pkgconfig plogr R6 Rcpp rlang tibble tidyselect]; }; dplyr_teradata = derive2 { name="dplyr.teradata"; version="0.3.0"; sha256="1yvz1hbczqvvmgkhbvvwkjx56ljqsxry86qk9bn62rdzdvhhpwhx"; depends=[bit64 DBI dbplyr dplyr odbc rstudioapi]; }; dplyrAssist = derive2 { name="dplyrAssist"; version="0.1.0"; sha256="1lqizh70b1apyr4578917gv6s0i7p84ak96a57kvwipmh36a4ywn"; depends=[DT magrittr miniUI plyr rstudioapi shiny shinyAce shinyWidgets stringr tidyr tidyverse]; }; - dpmixsim = derive2 { name="dpmixsim"; version="0.0-8"; sha256="0paa2hmpd6bqf0m7p9j7l2h3j18lm64ya6ya8zvp55wm8pf7xgqg"; depends=[cluster oro_nifti]; }; + dpmixsim = derive2 { name="dpmixsim"; version="0.0-9"; sha256="064i122j8vkpjxzfrhp25kb6nv5j3a7s8qk0202x7vnvj9caqjvx"; depends=[cluster oro_nifti]; }; dpmr = derive2 { name="dpmr"; version="0.1.9"; sha256="1cnjywkvjb4fhbf4shjmsrq47f1fg2x21hcm1q5512bm0wg9i6jd"; depends=[digest httr jsonlite magrittr rio]; }; dprint = derive2 { name="dprint"; version="0.0.4"; sha256="13bq6yjlp5p5rcsz684rqcigp42xnz3p5phnqmrhzm874gfzm8rj"; depends=[]; }; dqrng = derive2 { name="dqrng"; version="0.0.4"; sha256="0qkpyr7gc3m704znfv011l19s8qsnq42rn8p43qsakvndfyqynbb"; depends=[BH Rcpp]; }; dr = derive2 { name="dr"; version="3.0.10"; sha256="0dmz4h7biwrn480i66f6jm3c6p4pjvfv24pw1aixvab2vcdkqlnf"; depends=[MASS]; }; - dr4pl = derive2 { name="dr4pl"; version="1.1.1"; sha256="1wh7mdns9vxjkfphj2nqllh7q3k3lch5y0b4yzf3j4xrd0wyf2hm"; depends=[ggplot2 Matrix matrixcalc Rdpack tensor]; }; + dr4pl = derive2 { name="dr4pl"; version="1.1.7.1"; sha256="17w3ls3g57zs0ibgwsh12f7l47yc4sh13b02n61wf7k5yjaql8yr"; depends=[ggplot2 Matrix matrixcalc Rdpack tensor]; }; drLumi = derive2 { name="drLumi"; version="0.1.2"; sha256="09ps8rcqrm6a1y8yif2x82l0k4jywq60pkndh9nzfpbsw4ak2lby"; depends=[chron gdata ggplot2 Hmisc irr minpack_lm msm plyr reshape rootSolve stringr]; }; dragonking = derive2 { name="dragonking"; version="0.1.0"; sha256="01b01wd1s2b8sa9f0kfbf2pbzhaqra7xxskigqh3vlj389xqm1id"; depends=[]; }; dragulaR = derive2 { name="dragulaR"; version="0.3.1"; sha256="1cw5v7m1b4pxsizsjb3zdzhydxj577p6q5fcjklsvpzmiixzlyav"; depends=[htmlwidgets shiny shinyjs]; }; - drake = derive2 { name="drake"; version="5.2.1"; sha256="004rxsxzxyc2738p92p4mk68p88pc5n0dynkffr2pmqk50n3wrq6"; depends=[bindr CodeDepends crayon digest dplyr evaluate formatR fs future future_apply igraph knitr lubridate magrittr pkgconfig purrr R_utils R6 rlang rprojroot storr stringi testthat tibble tidyselect txtq visNetwork withr]; }; + drake = derive2 { name="drake"; version="6.1.0"; sha256="102k3r5c2qdg2avz2frjb1z5i1vwpsr6mx9zcl0n7hiwixn2rxfv"; depends=[codetools digest dplyr evaluate formatR fs future igraph magrittr pkgconfig purrr R_utils R6 rlang storr stringi tibble tidyselect withr]; }; drat = derive2 { name="drat"; version="0.1.4"; sha256="0vrpqf793vinx4v7jrbn910iplvpmrlwhdjqqzx8cl2k9hl43x08"; depends=[]; }; + draw = derive2 { name="draw"; version="1.0.0"; sha256="0kbz8rcgygl4fhmljzaan5jl7wjvfljcaykm7q9lw9s6m78p06gz"; depends=[]; }; drawExpression = derive2 { name="drawExpression"; version="1.0"; sha256="0c2daicqrjlqf7s788cknzvw9c6rm500lgmwfr7z03bq7bd2ah90"; depends=[]; }; drc = derive2 { name="drc"; version="3.0-1"; sha256="0c8xn8ripzq270hy8d16fcnx02l02alddznd7fqwk3jyi6113h1y"; depends=[car gtools MASS multcomp plotrix scales]; }; - drfit = derive2 { name="drfit"; version="0.7.1"; sha256="1k2chmhdwd78a5d1pxi3iskzfb4h1fxp51ji72qs73m3i6s2mqpz"; depends=[drc MASS qcc reshape2 RODBC]; }; + drfit = derive2 { name="drfit"; version="0.7.2"; sha256="03ahzmjzrkdrv36yj6vfg3g5bwn6lb7mlxmli68sixag5h83xq7f"; depends=[DBI drc MASS odbc qcc reshape2]; }; drgee = derive2 { name="drgee"; version="1.1.6"; sha256="01404mqvkvndn5gybq8dgkfc1cy9wk94p7k7i64h47w3zbkcwsax"; depends=[data_table nleqslv Rcpp RcppArmadillo survival]; }; driftR = derive2 { name="driftR"; version="1.1.0"; sha256="0mvrmwfqg234kk5klhmw7vmf8i0g485xkx5nk73iam16fbzl9y5g"; depends=[dplyr glue janitor lubridate magrittr readr readxl rlang stringr tibble]; }; drmdel = derive2 { name="drmdel"; version="1.3.1"; sha256="1bpm9jj9dxk2daxp1yb7pn9jd750p27qa84vdfxpacm5r0mggnys"; depends=[]; }; dropR = derive2 { name="dropR"; version="0.1"; sha256="0sw5lqlfdn64dbykxdhk1pz18f83if871vkapa2nxgcfiy79b0vs"; depends=[plyr shiny]; }; - droptest = derive2 { name="droptest"; version="0.1.1"; sha256="065cf0rc2jw83nypjcq3nj37kmdwbaq9yglrvcffy9jcdm804kp9"; depends=[data_table]; }; + droptest = derive2 { name="droptest"; version="0.1.3"; sha256="1wlfhj6c4pb5mcybyd2bcn55y3azk7dv7d7il97qwbhl8kf59csl"; depends=[data_table]; }; drsmooth = derive2 { name="drsmooth"; version="1.9.0"; sha256="1wgi961bvbsnq4bygxbpy4sy5fy34lrrkaaj0r2rxcahwa1sc38n"; depends=[boot car DTK lubridate mgcv multcomp pgirmess segmented]; }; drtmle = derive2 { name="drtmle"; version="1.0.3"; sha256="1b2nlkmx7park79pkmnjnkckli89zh3klfamxkqndgd1s5p0aa11"; depends=[doFuture future future_apply future_batchtools np plyr SuperLearner]; }; drugCombo = derive2 { name="drugCombo"; version="1.0.2"; sha256="0akb0lszqr9qci9aqwrahhhza1qzdai4w15drccjm399v0csqi0w"; depends=[BIGL Deriv ggplot2 minpack_lm nlme rgl]; }; ds = derive2 { name="ds"; version="3.0"; sha256="10xp575l0wh85wg32k3as02kgqm9ax9nx9i5kd5bkimfwg4qv745"; depends=[]; }; + dsa = derive2 { name="dsa"; version="0.60.24"; sha256="0jraxggygsdhsrq98wb88vzfsr60s7i8bnhpz7wirvx2nv3813pg"; depends=[dygraphs extrafont forecast ggplot2 gridExtra htmlwidgets R2HTML reshape2 rJava timeDate tsoutliers xtable xts zoo]; }; dsample = derive2 { name="dsample"; version="0.91.2.2"; sha256="18c0zxaqwgbn9kmkwlnicwd74ljy2sxj0b9ksif13pdlj3zn57h1"; depends=[MASS]; }; dse = derive2 { name="dse"; version="2015.12-1"; sha256="1976h57zallhzq43nshg77bsykcvkfwnasha1w59c44fjpl1gs9w"; depends=[setRNG tfplot tframe]; }; - dslabs = derive2 { name="dslabs"; version="0.3.3"; sha256="1bh6n0s171n6r68fsizz2jryjlj0990bn4rbinl2ln8j17r8lgpf"; depends=[ggplot2]; }; + dslabs = derive2 { name="dslabs"; version="0.5.1"; sha256="1pzpvgwzgnr3hi9idkkx6ik80bralg5bgnz4b5p24ab5fcr45gy5"; depends=[ggplot2]; }; dslice = derive2 { name="dslice"; version="1.1.5"; sha256="0qwz9rlgpgx0k28hca2m40ab0qad9rfp1gxswygchv7rcnl4f6ml"; depends=[ggplot2 Rcpp scales]; }; dsm = derive2 { name="dsm"; version="2.2.16"; sha256="1glw3pwgar9qadjya615n5n10lg7xvclcnr3k9vn8y3fgid22f80"; depends=[ggplot2 mgcv mrds nlme numDeriv plyr statmod]; }; dsmodels = derive2 { name="dsmodels"; version="1.1.0"; sha256="0gidxi4ph49mjm2hdf9flphfb9916al4cpdkiig504n7ms2sbpbg"; depends=[latex2exp pryr shape]; }; + dsr = derive2 { name="dsr"; version="0.1.0"; sha256="0iyy0axjbxbhy9hriwgnz96ryb1qvjm1gj62rmi27386ag2knf43"; depends=[dplyr rlang]; }; dsrTest = derive2 { name="dsrTest"; version="0.2.1"; sha256="1kljlfi7jf6fa8b5f3wxjsa9rlmzcp4qix3m2qyapz2lqd85mbb7"; depends=[asht exactci loglognorm]; }; dst = derive2 { name="dst"; version="1.0.0"; sha256="0xlrczyw0i3c5hnzflrlw463x9dlmv89m7xlq9xq3krxfsx3qv4z"; depends=[]; }; dtables = derive2 { name="dtables"; version="0.2.0"; sha256="0ikgip3p4b7q97b2dshlx0fq09xsk304gfk5prw4rk95w9wck3qs"; depends=[psych]; }; @@ -5919,30 +6181,31 @@ in with self; { dtt = derive2 { name="dtt"; version="0.1-2"; sha256="0n8gj5iylfagdbaqirpykb01a9difsy4zl6qq55f0ghvazxqdvmn"; depends=[]; }; dtw = derive2 { name="dtw"; version="1.20-1"; sha256="1w301xwizncy5r8v9rwwdxfshydgp3l1pnjla1fjn6n8lx3imjj3"; depends=[proxy]; }; dtwSat = derive2 { name="dtwSat"; version="0.2.4"; sha256="1yvl64z3dp4qyii4p8phbk1g1l10q9fbickj0xzzvg2q1xmjps91"; depends=[caret dtw ggplot2 lubridate mgcv plyr proxy raster RColorBrewer reshape2 rgdal scales snow sp xtable zoo]; }; - dtwclust = derive2 { name="dtwclust"; version="5.4.1"; sha256="17q48hv2zix8jz7znb5pvwq4mrixdyh1rpzmyvj8g0sz62q0h2xc"; depends=[bigmemory clue cluster dplyr dtw flexclust foreach ggplot2 ggrepel Matrix nloptr proxy Rcpp RcppArmadillo RcppParallel reshape2 RSpectra shiny shinyjs]; }; - dub = derive2 { name="dub"; version="0.1.0"; sha256="0sdk8sppjcfx2bsngpngm2446warsnipzzw4yz5z4jpickp52ay0"; depends=[]; }; + dtwclust = derive2 { name="dtwclust"; version="5.5.1"; sha256="12wz5pzmafq3vzfr5bm6kkqfn2fg9qb7z0c5csn9r1w8ijidsyg4"; depends=[bigmemory clue cluster dplyr dtw flexclust foreach ggplot2 ggrepel Matrix nloptr proxy Rcpp RcppArmadillo RcppParallel reshape2 RSpectra shiny shinyjs]; }; + duawranglr = derive2 { name="duawranglr"; version="0.6.3"; sha256="0swvrdwnbyigsvds3s32nw79b245q3cgv7xskjx7qjcpnvzr7x7q"; depends=[digest dplyr haven readr readxl]; }; + dub = derive2 { name="dub"; version="0.2.0"; sha256="066lzyk44380mf17vx4db4a3a4rs7zl85mj5hjg172khjbqnbixw"; depends=[]; }; duckduckr = derive2 { name="duckduckr"; version="1.0.0"; sha256="1wki8xvqp5hr27iafd9jbryl9faywfkdkpn0pa0afywbic39k2cm"; depends=[crul jsonlite]; }; dummies = derive2 { name="dummies"; version="1.5.6"; sha256="01f84crqx17xd6xy55qxlvsj3knm8lhw7jl26p2rh2w3y0nvqlbm"; depends=[]; }; dummy = derive2 { name="dummy"; version="0.1.3"; sha256="081a5h33gw6ym4isy91h6mcf247c2vsdygv9ll07a3mgjcjnk79p"; depends=[]; }; dunn_test = derive2 { name="dunn.test"; version="1.3.5"; sha256="0lqwvyl3pyygfc73nf81gzw3zl3w43r7ki0yw2dgrzhkpb2iji4a"; depends=[]; }; dupiR = derive2 { name="dupiR"; version="1.2"; sha256="0p649yw7iz6hnp7rqa2gk3dqkjbqx1f6fzpf1xh9088nbf3bhhz3"; depends=[plotrix]; }; dvmisc = derive2 { name="dvmisc"; version="1.1.2"; sha256="1dy0yykskwhkql19bhzmbwsgv028afc8jh9yqwbczj6f3vpv31zh"; depends=[MASS rbenchmark Rcpp]; }; - dwapi = derive2 { name="dwapi"; version="0.1.3"; sha256="149v1yjnrdbqjg7cpnanm1jv1dcpzqy264qk5dx8wvw9kdc5h3b8"; depends=[httr jsonlite readr rjson xml2]; }; + dwapi = derive2 { name="dwapi"; version="0.1.3.1"; sha256="1sz4n8vn7cmlilxzhkm4rdfca0904cbh28n5383p9pr46bdi69q5"; depends=[httr jsonlite readr rjson xml2]; }; dyads = derive2 { name="dyads"; version="1.1"; sha256="0jlyg4bz3zp4g5ig0swwi72bxaj85wll05h6vishnvmnprpdc96n"; depends=[MASS mvnfast]; }; - dygraphs = derive2 { name="dygraphs"; version="1.1.1.5"; sha256="0bfpna7gijnfvf40fm4dhb63lf2x6n91d0ym3w936s6xiyc3ah17"; depends=[htmltools htmlwidgets magrittr xts zoo]; }; + dygraphs = derive2 { name="dygraphs"; version="1.1.1.6"; sha256="022j007mzfa9k2n31yg4aizcsf571vv3jip092h23rqj03rk3ly3"; depends=[htmltools htmlwidgets magrittr xts zoo]; }; dyn = derive2 { name="dyn"; version="0.2-9.6"; sha256="16fqv9k7yxdgybwzafjkyqm16qpgqz13lcjpi6a1nc8xbzlzh0gb"; depends=[zoo]; }; dynBiplotGUI = derive2 { name="dynBiplotGUI"; version="1.1.5"; sha256="0fvyn33mzjcc3sis05phc6412y25m406il2wzdfw8caa8dafj0yw"; depends=[tcltk2 tkrplot]; }; dynCorr = derive2 { name="dynCorr"; version="1.1.0"; sha256="0l5k764j1zhsqpgp0ndihah63hsk3zv9hviixfmh4h3i0sr0q52p"; depends=[lpridge]; }; dynOmics = derive2 { name="dynOmics"; version="1.2"; sha256="0fsck5wx4rcfckjr6xg0s3a6cvh4881cqzy0af91icqg0p3zjj2l"; depends=[ggplot2 gplots]; }; - dynRB = derive2 { name="dynRB"; version="0.11"; sha256="0xki395r1biasbpg0dp0daql44zszs2d3sb7q08ypcp529c9v40y"; depends=[caTools corrplot ggplot2 RColorBrewer reshape2 vegan]; }; + dynRB = derive2 { name="dynRB"; version="0.13"; sha256="04axc6hzwaclgdyl5lplihgbg6ip8irpiyanghfhhid3c4jm03r7"; depends=[corrplot ggplot2 RColorBrewer reshape2 vegan]; }; dynaTree = derive2 { name="dynaTree"; version="1.2-10"; sha256="1ng672mlv98xnsbd4xq70hxc8j158la4n63y46rw74granaz29ya"; depends=[]; }; dynamac = derive2 { name="dynamac"; version="0.1.4"; sha256="1gsqgwqamfa8zvl01zsjmbsn7q73m4aii6gzb5khppw244qjgw8y"; depends=[lmtest MASS]; }; dynamicGraph = derive2 { name="dynamicGraph"; version="0.2.2.6"; sha256="1xnsp8mr3is4yyn0pyrvqhl893gdx2y1zv8d2d55aah2xbfk0fjj"; depends=[ggm]; }; dynamicTreeCut = derive2 { name="dynamicTreeCut"; version="1.63-1"; sha256="1fadbql7g5r2vvlkr89nlrjxwp4yx4xrdqmv077qvmnx9vv0f4w3"; depends=[]; }; - dynamichazard = derive2 { name="dynamichazard"; version="0.5.3"; sha256="1ggz3i4l5p23gkk0mvfgkiv9q8gmnamjyss8kz5i870ymwnxya09"; depends=[boot Rcpp RcppArmadillo survival]; }; + dynamichazard = derive2 { name="dynamichazard"; version="0.6.1"; sha256="0xwvfpw0djnzi4igim8g32s233f5xf53pskg5w4xwnqja7x6w8v2"; depends=[boot Rcpp RcppArmadillo survival]; }; dynamo = derive2 { name="dynamo"; version="1.0"; sha256="0arsv686ix7xpca57ayqgifim1q35dl4w2mx7fw8bc0lidapilyp"; depends=[abind glamlasso MortalitySmooth Rcpp RcppArmadillo]; }; dynatopmodel = derive2 { name="dynatopmodel"; version="1.2.1"; sha256="0lpfhj69bvagqzzg2kjqvn9xx8f93ii34flrrns20z3bxla6gds9"; depends=[deSolve lubridate maptools raster rgdal rgeos sp topmodel xts zoo]; }; - dyncomp = derive2 { name="dyncomp"; version="0.0.1-5"; sha256="1626z5523s4igw55fw97lplfgg9mzf4np8imrarkligslvc5q8ip"; depends=[zoo]; }; + dyncomp = derive2 { name="dyncomp"; version="0.0.2-1"; sha256="13wp2k8nbgrbrqng2dmgy0ixgidk51wq9y7mv5pdbvdajxdsyh11"; depends=[zoo]; }; dynetNLAResistance = derive2 { name="dynetNLAResistance"; version="0.1.0"; sha256="018y3m648ni31rlisjfnrx1d10mm48wpxanlnnxxpnqxjcywg2x8"; depends=[doParallel foreach igraph]; }; dynfrail = derive2 { name="dynfrail"; version="0.5.2"; sha256="1q7ml24j0ycy2bwpa14vl96315ni7x9rfp0qmf36w00mylgc3ry6"; depends=[dplyr magrittr Rcpp RcppArmadillo survival tibble tidyr]; }; dynia = derive2 { name="dynia"; version="0.2"; sha256="1swip4kqjln3wsa9xl0g92zklqafarva923nw7s44g4pjdy73d5l"; depends=[]; }; @@ -5950,29 +6213,29 @@ in with self; { dynpanel = derive2 { name="dynpanel"; version="0.1.0"; sha256="073kfl5g4d7v8wd2qnpixqrxbac3cqj35z03ax2zlb8h2afa7j62"; depends=[gtools]; }; dynpred = derive2 { name="dynpred"; version="0.1.2"; sha256="111ykasaiznn3431msj4flfhmjvzq7dd1mnzn1wklc5ndix1pvf9"; depends=[survival]; }; dynprog = derive2 { name="dynprog"; version="0.1.0"; sha256="1rvn2zyhdi60y01zbvfv4him6iz2ljdr7ivkr7m7y7yd1lg547ax"; depends=[rlang]; }; - dynr = derive2 { name="dynr"; version="0.1.12-5"; sha256="1l9waqwg5mkqy8ipryickrkf141mjpzdvsc4qbw8bq4rkrgykklc"; depends=[ggplot2 latex2exp magrittr MASS Matrix mice numDeriv plyr Rdpack reshape2 xtable]; }; + dynr = derive2 { name="dynr"; version="0.1.13-4"; sha256="11qs6zj73y8x1pvlnq09f1sapdg9b933a45il0p8w23zj1232205"; depends=[ggplot2 latex2exp magrittr MASS Matrix mice numDeriv plyr Rdpack reshape2 xtable]; }; dynsbm = derive2 { name="dynsbm"; version="0.5"; sha256="01vi4qzgp25l4wg2ij9pqrn775x4yj9gck0l397nwjg96pa7x2lz"; depends=[RColorBrewer Rcpp riverplot]; }; dynsim = derive2 { name="dynsim"; version="1.2.1"; sha256="0nkxn9v4f353fhcn1vsdrh29mrms10zid63b84flg3c6hvc0x4qr"; depends=[ggplot2 gridExtra MASS]; }; dynsurv = derive2 { name="dynsurv"; version="0.3-6"; sha256="12bfv6bykgsyxryydhjs89yvk7akam5gy89mzn1hv4ilrpc5mlmw"; depends=[BH ggplot2 nleqslv plyr reshape survival]; }; - dynutils = derive2 { name="dynutils"; version="0.1.0"; sha256="0fr9gnsafi02ydmp84kv8lq6q4mcf4sg1izgd4h1s1ljvgwq3yqp"; depends=[crayon desc devtools dplyr glue magrittr processx purrr Rcpp stringr testthat tibble tidyr]; }; - e1071 = derive2 { name="e1071"; version="1.6-8"; sha256="08n6i26nfckjpxjkzi8phhanc3ahsrirkv5rz38y2jcv7ds031pn"; depends=[class]; }; + dynutils = derive2 { name="dynutils"; version="1.0.0"; sha256="182k67zkn1gq91h405f0csw71qs5apf92ddrbh8274nmar8hnha4"; depends=[crayon desc devtools dplyr glue magrittr processx purrr Rcpp stringr testthat tibble tidyr]; }; + e1071 = derive2 { name="e1071"; version="1.7-0"; sha256="0fk4pw67cw1663d0n9rf1qfdqzz8k5nqkjgp3hi5jr422qp9lsck"; depends=[class]; }; eAnalytics = derive2 { name="eAnalytics"; version="0.1.3"; sha256="1lrkmfs2sq9p2n7g528jf6wxixqk08w468nckkij2mprhrccjjj6"; depends=[dplyr DT energyr googleVis leaflet plotly shiny shinydashboard]; }; eChem = derive2 { name="eChem"; version="1.0.0"; sha256="0wmf204hqd4s5har5l9bkcbrbmbqbb8m11w2aivi2gs98f3hy51p"; depends=[animation plot3D]; }; - eDMA = derive2 { name="eDMA"; version="1.5-1"; sha256="0yhywv6bfb1pb6rxkw484kf2knnqar407v5khhs023kdjb01iy8q"; depends=[Rcpp RcppArmadillo xts zoo]; }; + eDMA = derive2 { name="eDMA"; version="1.5-3"; sha256="0wyp81si6lcispqng4c7lii22qbyblvijgnlxvcsnkcxj5hpm76j"; depends=[Rcpp RcppArmadillo xts zoo]; }; eHOF = derive2 { name="eHOF"; version="1.8"; sha256="0g0sb98mlgvhs27s0a1x0ysj3r4p3r7i382fqzfv29kn1ayw0r5c"; depends=[lattice mgcv]; }; - eLNNpaired = derive2 { name="eLNNpaired"; version="0.2.3"; sha256="08nck2p5npyw264kgcqmgx5rx7c3h9v892f90xlcd1dnb7dqlan3"; depends=[Biobase globaltest GSEAlm iCheck samr]; }; eMLEloglin = derive2 { name="eMLEloglin"; version="1.0.1"; sha256="087zw48lykls2jcsmpqd5jkrlpr0j423snp00liszjhdpdh59saq"; depends=[lpSolveAPI]; }; eNetXplorer = derive2 { name="eNetXplorer"; version="1.0.1"; sha256="196m8cbd95pc8w03n0nxc625mxwpqpcw3lc3cbrvpzaljmfhqn2v"; depends=[calibrate glmnet gplots Matrix progress RColorBrewer]; }; ePCR = derive2 { name="ePCR"; version="0.9.9-6"; sha256="1q46njiqasrma9vr8p7m9ndwag53aavbg4l7a4shgys3w862m7kc"; depends=[Bolstad2 c060 glmnet hamlet impute MASS Matrix pracma ROCR survival timeROC]; }; - eRm = derive2 { name="eRm"; version="0.16-1"; sha256="1wyzqhka7k4a4xclicc098zgi0y2fbx4fray144qx1pyaa8p8075"; depends=[lattice MASS Matrix]; }; + eRm = derive2 { name="eRm"; version="0.16-2"; sha256="0cfd8j8d1x33g77vyc29xd2qjwq7bsqh8c8kvcr02vi1rq3kkvkv"; depends=[lattice MASS Matrix]; }; eaf = derive2 { name="eaf"; version="1.8"; sha256="1plzvfa2vs3njky7xk9dvic2xapdnzb5iycrksv0qj03ylbh6410"; depends=[modeltools]; }; earlyR = derive2 { name="earlyR"; version="0.0.1"; sha256="14davqhh3n5dfsddnfd79ni56bssrpwhvkqkdb77a8x9fn8w32pv"; depends=[distcrete EpiEstim epitrix]; }; + earlygating = derive2 { name="earlygating"; version="1.0"; sha256="0y6xjkh9p8bvanc9p5sycah8v81k85xr8i7vyvjb9g4a64srwhd7"; depends=[betareg doParallel foreach]; }; earlywarnings = derive2 { name="earlywarnings"; version="1.0.59"; sha256="06j5g5lrzl4p5pb1pp79h00iqpbwralzhpzxmaiymv7j8kz87nr0"; depends=[fields ggplot2 Kendall KernSmooth lmtest moments nortest quadprog som spam tgp tseries]; }; earth = derive2 { name="earth"; version="4.6.3"; sha256="0af02qi3np40p90v0npnwqa5dg2zszky6kjx9zjw7id7jw5kx1m6"; depends=[plotmo TeachingDemos]; }; earthtones = derive2 { name="earthtones"; version="0.1.0"; sha256="1phl50bgd40i36fdkfs9xkqm703vgwxlnpyik6lk8ssip0m4rn9j"; depends=[ggmap]; }; easyAHP = derive2 { name="easyAHP"; version="0.1.1"; sha256="161mn90j9ph1p9277mj61hch8ndcv7k9izs32q93y5wp474gzynd"; depends=[]; }; - easyCODA = derive2 { name="easyCODA"; version="0.23"; sha256="0mik051b34p66a2ipwi512926wl5r1zdqhdam68cr13sar2c0cbq"; depends=[ca]; }; - easyDes = derive2 { name="easyDes"; version="3.0"; sha256="1z4ynd1ck2vxsshygjgnhyzg8i41kpnwsfix96nmgwm3861n0phb"; depends=[multcomp PMCMR]; }; + easyCODA = derive2 { name="easyCODA"; version="0.25"; sha256="079vj7gxbpqcx7jjk6vfv13ng23jglsq1x88i71qvqlqp9vkvs87"; depends=[ca vegan]; }; + easyDes = derive2 { name="easyDes"; version="4.0"; sha256="1lfkkkwlj444md7xp2zzx0ai976yxq6xp3v2a42pwgzs1fcafwal"; depends=[multcomp PMCMRplus]; }; easyNCDF = derive2 { name="easyNCDF"; version="0.0.4"; sha256="1hd7b6pdm5j41a4v0jxhbqdy2bz5gj86fsfwj0l7gg7h32d6hkhq"; depends=[abind ncdf4]; }; easyPubMed = derive2 { name="easyPubMed"; version="2.5"; sha256="08b94pcya9bmnsipd1jn95dpadw2aqb0fnvm68n11mwg40hd272j"; depends=[XML]; }; easySVG = derive2 { name="easySVG"; version="0.1.0"; sha256="03gl5gl0yqgpygd4kna79wrhflbnq3zrz3iq2i8hk9xqd83mszh3"; depends=[]; }; @@ -5984,30 +6247,31 @@ in with self; { easynls = derive2 { name="easynls"; version="5.0"; sha256="1ma2q4y5dxk6q99v880vqfsgy1fha96j7pi8ch699l0pi6bx0d6c"; depends=[]; }; easypackages = derive2 { name="easypackages"; version="0.1.0"; sha256="00paxdwz4bw3imqhcsw6hj1h0gmnpishlxcj79n826vhdy23jc4y"; depends=[assertthat devtools]; }; easypower = derive2 { name="easypower"; version="1.0.1"; sha256="1vf0zv55yf96wjxja6ifdjvgc9nw0jl0hnc1ygyjd8pmwbgdz9bl"; depends=[pwr]; }; - easyreg = derive2 { name="easyreg"; version="1.0"; sha256="01wpqr2vfa245xln1zmqr1a9bibj0cnx60bw24l1q1li7r13wjyy"; depends=[car nlme]; }; + easyreg = derive2 { name="easyreg"; version="2.0"; sha256="0qxcrgcc306g4i2wnph94wa7sj06mqxi96cvbpnk9mi46ps0l1kw"; depends=[car nlme]; }; ebGenotyping = derive2 { name="ebGenotyping"; version="2.0.1"; sha256="1jllzc7kvvckrws8qhgvwy626llyb68sp1davp7swx48sf7rwcxc"; depends=[]; }; ebSNP = derive2 { name="ebSNP"; version="1.0"; sha256="0x3ijwg4yycsfy6jch1zvakzfvdgpiq8i7sqdp5assb8z1823w0b"; depends=[]; }; - eba = derive2 { name="eba"; version="1.7-2"; sha256="00hlmnknif9yr4wzw0n1fzkrgbciv7ljc0gkfq34v3vvy3dmdsvq"; depends=[nlme]; }; + eba = derive2 { name="eba"; version="1.8-0"; sha256="0241l0vf1791vxkahxlf9d2bd1073hyl0nfmccafzaa0k76z369w"; depends=[nlme]; }; ebal = derive2 { name="ebal"; version="0.1-6"; sha256="1cpinmbrgxxv0fzi9qi2inv4hw2lz7iq4b0ggp316rdqqb5bj9r0"; depends=[]; }; ebdbNet = derive2 { name="ebdbNet"; version="1.2.5"; sha256="0kal4sqx12y04696ilwnwkmss4rn16dkbnalgqimz6i4jhz8n23h"; depends=[igraph]; }; - ebimetagenomics = derive2 { name="ebimetagenomics"; version="0.3"; sha256="1nvdpgq88yf7a89qy896wc1h7afjwj90jdbpm144fn12b2pba0a7"; depends=[breakaway sads vegan]; }; + ebimetagenomics = derive2 { name="ebimetagenomics"; version="0.6"; sha256="0jaz7l71pnf3i2q83mx0pjqli9sn30a4b9vshcmp70v3h6xdj9wx"; depends=[breakaway sads vegan]; }; ebmc = derive2 { name="ebmc"; version="1.0.0"; sha256="0v9hkzy8ljddmi6wdjd1jga4ib566ikr1vgrvxba67ka524r6bbp"; depends=[C50 DMwR e1071 pROC randomForest rpart]; }; ecb = derive2 { name="ecb"; version="0.2"; sha256="17hj4d48j6rran64ajzlgkgz17mab51fa3lz8rm3mw0qhahkjlmc"; depends=[curl httr rsdmx xml2]; }; ecd = derive2 { name="ecd"; version="0.9.1"; sha256="0d8mf5q6n7k5qj6kxvrb3habl0qmn2rxv814kydkrz2bg0scvm1q"; depends=[digest ggplot2 gridExtra gsl moments optimx polynom RcppFaddeeva Rmpfr RSQLite stabledist xtable xts yaml zoo]; }; ecdfHT = derive2 { name="ecdfHT"; version="0.1.1"; sha256="1n3n9n86pj8c54l3xvp7knvi0ajbnjmz9pi79p7wfq92a90fqx48"; depends=[rgl]; }; ecespa = derive2 { name="ecespa"; version="1.1-10"; sha256="1n6wvz463w0ainn9a52arjhs5q9pwciknb5328pr6y287fwa3nnn"; depends=[spatstat]; }; - echo_find = derive2 { name="echo.find"; version="1.1.1"; sha256="074qk22dsz29w88ydrwshjzzhrh86wyyjiiwiahq4ns5m64szw7n"; depends=[minpack_lm]; }; + echarts4r = derive2 { name="echarts4r"; version="0.1.1"; sha256="0vknh2s5ifk3nk66v7klgwkmlhk0aji7vrl18vad0x0jgkzayyvv"; depends=[base64enc broom countrycode crosstalk d3r data_tree dplyr htmlwidgets magrittr purrr]; }; + echo_find = derive2 { name="echo.find"; version="1.3.1"; sha256="1z21pcl8kfxrikcghkgwa7flqv3jh3sgdaips64m26i9r9lp5kc5"; depends=[minpack_lm]; }; echogram = derive2 { name="echogram"; version="0.1.1"; sha256="0f93s9f1ghin8129vb3bvsp7jmy2hfrx97p86hci8b2y4f7b83qh"; depends=[geosphere readHAC]; }; - echor = derive2 { name="echor"; version="0.1.0"; sha256="0242yk02qkcfrivxc3zgaw3awmj4b6ra38h1gg21795yrpzcyv02"; depends=[dplyr httr jsonlite lubridate purrr sf tibble tidyr]; }; + echor = derive2 { name="echor"; version="0.1.1"; sha256="1mc0qng9nqkvbpyklhf0a0fpgww8x88cgb29gmf1v7zycs1ch1m9"; depends=[dplyr geojsonsf httr lubridate plyr purrr readr tibble tidyr]; }; ecipex = derive2 { name="ecipex"; version="1.0"; sha256="0pzmrpnis52hvy80p3k60mg9xldq6fx8g9n3nnqi3z56wxmqpdv7"; depends=[CHNOSZ]; }; eclust = derive2 { name="eclust"; version="0.1.0"; sha256="01x327w02m357lngmgv3drni2s67sass25xk9vni1z434n8i4428"; depends=[caret data_table dynamicTreeCut magrittr pacman pander stringr WGCNA]; }; - ecm = derive2 { name="ecm"; version="4.0.0"; sha256="09678l6sh61f51jfpmkk4bkxind8jdn6izw6bizshr1bvk8lapjc"; depends=[car]; }; + ecm = derive2 { name="ecm"; version="4.3.0"; sha256="0nck8hfiqpkq8wm2jrzxi12aq9pnq58wgaizygdqf2m40bjz47gv"; depends=[car]; }; eco = derive2 { name="eco"; version="4.0-1"; sha256="08fblbr9qp2v0cp69hy68c18xjqvx0nsnx42n2vd1gc6r7apapj6"; depends=[MASS]; }; ecodist = derive2 { name="ecodist"; version="2.0.1"; sha256="04piv52b4b9rgv1gy6s3b1lzapc0rqiwp1yi7f8yzgjd9329kc5g"; depends=[]; }; ecoengine = derive2 { name="ecoengine"; version="1.11.0"; sha256="1d5x6hvqrqjj0wg07m4dbgb9ljdq73ibavzy2q5magnfn50a7rzm"; depends=[assertthat data_table dplyr httr jsonlite lubridate magrittr plyr whisker]; }; ecolMod = derive2 { name="ecolMod"; version="1.2.6"; sha256="1n30faldfhpm2jkaw793vr220kgn3bmn8hxhw32rax294krmwn4v"; depends=[deSolve diagram rootSolve shape]; }; ecolottery = derive2 { name="ecolottery"; version="1.0.0"; sha256="0w5aq1aaqzz74vlj8hgnmn60l8rdrchx022dpspqnpvpzdlh65z5"; depends=[abc ggplot2]; }; - econet = derive2 { name="econet"; version="0.1.6"; sha256="1izb7ssb5a5r5qky3jzyp2j5p1qlhq7vhl8nhz2xhkiks8xgf4xg"; depends=[bbmle dplyr igraph intergraph MASS Matrix minpack_lm plyr sna spatstat_utils tnet]; }; + econet = derive2 { name="econet"; version="0.1.7"; sha256="0pvr9bv4ix5xvr0hg61j1iizdi2n5vs8widl91cj1ci90g52dvrk"; depends=[bbmle dplyr igraph intergraph MASS Matrix minpack_lm plyr sna spatstat_utils tnet]; }; econullnetr = derive2 { name="econullnetr"; version="0.1.0"; sha256="0l4qy7x8f8sjc3s1bhz3kadfqifw0x9jl7dvcjwkh9q14h093cz5"; depends=[bipartite gtools reshape2]; }; ecoreg = derive2 { name="ecoreg"; version="0.2.2"; sha256="1yzyqvhshgc7ip251y7hsvip4xwf8i92bvvz84mn0mzv5b4mq3im"; depends=[]; }; ecoseries = derive2 { name="ecoseries"; version="0.1.5"; sha256="1q35hp5hl6z28hns5rnp3mjn6hqp5qh714pagw7fw4d4a6wnvacy"; depends=[magrittr RCurl readr rjson rvest tibble xml2 zoo]; }; @@ -6016,9 +6280,10 @@ in with self; { ecospat = derive2 { name="ecospat"; version="3.0"; sha256="1c9cbxs022f2bjnvgdfxhmqkzr30svna596r1fn5i7zsqd7dm0w6"; depends=[ade4 adehabitatHR adehabitatMA ape biomod2 classInt dismo doParallel ecodist foreach gbm gtools iterators maptools MigClim poibin PresenceAbsence randomForest raster rms snowfall sp spatstat vegan]; }; ecotox = derive2 { name="ecotox"; version="1.3.2"; sha256="12nng1v73lshcy99hqrp5a1qy052z0cz5n97bq7fla7zc4is69y5"; depends=[ggplot2 magrittr]; }; ecotoxicology = derive2 { name="ecotoxicology"; version="1.0.1"; sha256="084xkr59d7x9zxmsnsyym2x8jshz6ag6rvnmhd1i6fzar8ypwccb"; depends=[]; }; - ecoval = derive2 { name="ecoval"; version="1.2"; sha256="098n31py05f0ram733jdc85ki3fcpjc40yn7wsi7g74jyhdb1qms"; depends=[jpeg rivernet utility]; }; + ecoval = derive2 { name="ecoval"; version="1.2.1"; sha256="0dm2vqk5hgs4dh9ms10srjjblk09sidn7m06r714h1vswcd7bphs"; depends=[jpeg rivernet utility]; }; ecp = derive2 { name="ecp"; version="3.1.0"; sha256="0siq5acpy4wmqzm6zvpqj1m8a05hgk5jhb1clv06y40kqk5kjrap"; depends=[Rcpp]; }; ecr = derive2 { name="ecr"; version="2.1.0"; sha256="0vvkdxlcqaim9mkgwgdxrx1xhw3lshi1nxfw3kqllq14p3l6xss4"; depends=[BBmisc checkmate ggplot2 parallelMap ParamHelpers reshape2 smoof]; }; + ectotemp = derive2 { name="ectotemp"; version="0.1.1"; sha256="1gnlbd7h1jf5mryi9mdpbj521vbsj00jd4bc26rqj70wm54nn3p9"; depends=[dplyr psych]; }; eda4treeR = derive2 { name="eda4treeR"; version="0.2.0"; sha256="0fh6nfgvbkvjm1f0b292ggi0mr8ylq5pg2wp8cph46j8rhbgbdxz"; depends=[dae dplyr emmeans ggplot2 lme4 magrittr pbkrtest tidyverse]; }; edarf = derive2 { name="edarf"; version="1.1.1"; sha256="0f27hs7vn4v2jis3d66s48hr0ki8m8ndspcw1cwns5vjwb77iqwm"; depends=[data_table ggplot2 mmpf]; }; edcc = derive2 { name="edcc"; version="1.0-0"; sha256="036fi6mnn9480hkb378xb5jilkfvdydjmkyw4mcc9s1lz195f62w"; depends=[spc]; }; @@ -6046,11 +6311,11 @@ in with self; { eegkitdata = derive2 { name="eegkitdata"; version="1.0"; sha256="1krsadhamv1m8im8sa1yfl7injvrc4vv3p88ps1mpn8hibk5g51m"; depends=[]; }; eel = derive2 { name="eel"; version="1.1"; sha256="0cv6dhw57yy140g73z94g9x1s42fpyfliv9cm2z1alm7xwap1l0x"; depends=[emplik rootSolve]; }; eemR = derive2 { name="eemR"; version="0.1.5"; sha256="13c5k2si8aq2461iz9413hlqzgkb25zrdfvizzk8s2nn60npyaw9"; depends=[dplyr pracma R_matlab readr rlist stringr viridis]; }; - eeptools = derive2 { name="eeptools"; version="1.2.0"; sha256="14cmvshalfvh1zd1gp2dsp42kjxw2pdfixwlk9zvlw7ncx9y83j3"; depends=[arm data_table ggplot2 maptools vcd]; }; + eeptools = derive2 { name="eeptools"; version="1.2.1"; sha256="0idrwh6khz1sbslx35kmm6f79njam0xl48r3aiy70p2l569rj89h"; depends=[arm data_table ggplot2 maptools vcd]; }; eesim = derive2 { name="eesim"; version="0.1.0"; sha256="0ljj1jp9cl0im8k7sfjd28ggj4q9a14df3554kwxkssr1vsn1wbc"; depends=[dplyr lubridate purrr viridis]; }; effectFusion = derive2 { name="effectFusion"; version="1.0"; sha256="1nx61n4lgnj6wh4arqm62p9xwxqvz4g7bs4b5k3ybkhmh6ns9v5l"; depends=[bayesm cluster ggplot2 MASS Matrix]; }; - effectR = derive2 { name="effectR"; version="1.0.1"; sha256="11kqp0si5jm3ffw7d1kq5b6qwdzwijdp1n2hv8a3fa5vppkp43ws"; depends=[ggplot2 reshape2 seqinr shiny viridis]; }; - effects = derive2 { name="effects"; version="4.0-2"; sha256="10anvrn5v04i985d06fxv099970vvjllms7iwpbpa488zv5k9b81"; depends=[carData colorspace estimability lattice lme4 nnet survey]; }; + effectR = derive2 { name="effectR"; version="1.0.2"; sha256="1icr1sx98x3h8rbky1agdh809arhjqcypyajl7y50yis8a5pkycb"; depends=[ggplot2 reshape2 rmarkdown seqinr shiny viridis]; }; + effects = derive2 { name="effects"; version="4.0-3"; sha256="1riwc3z7h1h08nfkiv2fymllnbqqsdgaq7asla77ygm5hiqd435y"; depends=[carData colorspace estimability lattice lme4 nnet survey]; }; effectsizescr = derive2 { name="effectsizescr"; version="0.1.0"; sha256="0shfjk6r3bz04jakrn5nwgymjx60lk83i0akcx7zqfxp3k8yncs5"; depends=[Kendall]; }; efflog = derive2 { name="efflog"; version="1.0"; sha256="1sfmq7xrr6psa6hwi05m44prjcpixnrl7la03k33n0bksj8r1w6b"; depends=[]; }; effsize = derive2 { name="effsize"; version="0.7.1"; sha256="0l0ja7qcknn8r5hf7nrjk5cy0ajw0z60ggbyj8qvjzf8qah4mlss"; depends=[]; }; @@ -6059,58 +6324,65 @@ in with self; { ega = derive2 { name="ega"; version="2.0.0"; sha256="04kwh24aap22yclmcrix3vi553qb30hd43mgfzpdl0cw3ibrh7xg"; depends=[ggplot2 mgcv]; }; egcm = derive2 { name="egcm"; version="1.0.12"; sha256="0nssf5six1j7z6fss7478zdbsfx60myzw833m7nsnaf1r8n4ixaf"; depends=[ggplot2 MASS pracma quantmod tseries urca xts zoo]; }; egg = derive2 { name="egg"; version="0.4.0"; sha256="11zi42wvjd5x68xrxsqwzwdr9mb3iw9pm02mgy3z6m21mgyvgnmn"; depends=[ggplot2 gridExtra gtable]; }; - eggCounts = derive2 { name="eggCounts"; version="2.0"; sha256="0qlx1wm50zh5mp3bn6lkkq43d19ji2fwa4x0z5f98qhmhxa74lck"; depends=[BH boot coda lattice numbers Rcpp RcppEigen rootSolve rstan StanHeaders testthat]; }; - egoTERGM = derive2 { name="egoTERGM"; version="1.0.0"; sha256="10q52552srz2s9v3r3k4y8v8jfcb1arirw3mr1p9a5nbixdcnp8z"; depends=[boot btergm ergm GGally Matrix network sna speedglm statnet xergm_common]; }; + eggCounts = derive2 { name="eggCounts"; version="2.1-1"; sha256="121hmqav8x0d6aqzbz96dv0rdc6mv070v5rvaz13rj17ix5y92yi"; depends=[BH boot coda lattice numbers Rcpp RcppEigen rootSolve rstan StanHeaders testthat]; }; + egoTERGM = derive2 { name="egoTERGM"; version="2.0.1"; sha256="06yq951cgb1qkily13a3n3kjzpydcbzr8kdsg4mbp1z66nk40izd"; depends=[boot btergm ergm GGally Matrix network sna speedglm xergm_common]; }; egonet = derive2 { name="egonet"; version="1.2"; sha256="1f0fbqyk2ilmhirxvf1iwgfappi5r7807ag77r89lbaf5jq8akl0"; depends=[sna]; }; - egor = derive2 { name="egor"; version="0.18.06-02"; sha256="1q0kvgz04d80drvgli1pmra6dcn77swk8z19sj3lkqx3qmgjqn7m"; depends=[dplyr igraph network plyr purrr shiny survey tibble tidyr]; }; - eha = derive2 { name="eha"; version="2.5.1"; sha256="0www19cc80xg2hi1ibajqnp931gda9pk95cnx976lq1kpxzb2pyl"; depends=[survival]; }; + egor = derive2 { name="egor"; version="0.18.08-02"; sha256="14jhj1lj5bdsf64zq9gia63h0p3i9211dnla9g7r0dmlbbygwqgf"; depends=[dplyr igraph network plyr purrr shiny survey tibble tidyr]; }; + eha = derive2 { name="eha"; version="2.6.0"; sha256="0nw72jcwcx2rzlzsrmdvg7pymyzf5icynidlr1m9b70v6rnqr84b"; depends=[survival]; }; ei = derive2 { name="ei"; version="1.3-3"; sha256="0i8pvpal23zwsqldhmm3iis4vw9s08mlydpshaig2dsd9549gn11"; depends=[cubature eiPack ellipse foreach MASS mnormt msm mvtnorm plotrix sp tmvtnorm ucminf]; }; eiCompare = derive2 { name="eiCompare"; version="2.1"; sha256="0kv4k1zk1gz3fapy2i2ydy0n38hy95i10r3hr3dx8mkkf3nsj46h"; depends=[cubature data_table ei eiPack ellipse foreach ggplot2 magrittr mnormt msm mvtnorm plotrix plyr R_utils stringr tidyr tmvtnorm ucminf]; }; eiPack = derive2 { name="eiPack"; version="0.1-7"; sha256="1cxk31bj012ijm85sf6l4rjrwayw94j2d6aav8p9g1f0raha2s6y"; depends=[coda MASS msm]; }; eigeninv = derive2 { name="eigeninv"; version="2011.8-1"; sha256="18dh29js824d7mrvmq3a33gl05fyldzvgi8mmmr477573iy9r30g"; depends=[]; }; eigenmodel = derive2 { name="eigenmodel"; version="1.10"; sha256="1x613ipqpsq5yj4bb68g7yfwavd75n02xajr2cpbzsa2vyipvpsa"; depends=[]; }; eigenprcomp = derive2 { name="eigenprcomp"; version="1.0"; sha256="156qyv7sl8nng55n3ay6dnpayyfrqv27ndz40xf4w92is9zmymy0"; depends=[]; }; + eikosograms = derive2 { name="eikosograms"; version="0.1.1"; sha256="13s5wqcc8iwnhn3msrh9dfrvq9bwlby93p9v5wcnrm8m9iskax1s"; depends=[plyr]; }; eive = derive2 { name="eive"; version="2.3"; sha256="073hwx944db7zxq6yib6yvciaic11k49zl1iqphippcd5ygkad80"; depends=[Rcpp]; }; + eivtools = derive2 { name="eivtools"; version="0.1-8"; sha256="0ynmrql6dv10m7cwba5mzwlbvp6ab53nzqqvk3ihwyiqzmnnmpk4"; depends=[R2jags]; }; eiwild = derive2 { name="eiwild"; version="0.6.7"; sha256="1fp4kvlmcjjnzn2a5cmlzaf6y5q6cdbbi2nmvjyqc4y1bmwh3srf"; depends=[coda gtools lattice]; }; - eixport = derive2 { name="eixport"; version="0.3.0"; sha256="1ykv5jqri4zkshawck3lfl6jrzw24k27gwhi02rckzbrg2nb3909"; depends=[ncdf4 raster sf sp]; }; + eixport = derive2 { name="eixport"; version="0.3.6"; sha256="0wzp7jxs80drp428m6kgx419vzrmiw6spgv9ldrakbfkjjnrzsa6"; depends=[cptcity ncdf4 raster sf sp]; }; elasso = derive2 { name="elasso"; version="1.1"; sha256="0nz3vw803dvk4s45zc9swyrkjwna94z84dn4vfj3j17h74a0cij2"; depends=[glmnet SiZer]; }; elastic = derive2 { name="elastic"; version="0.8.4"; sha256="0s0nz8j4f1qxjlgzllnfsirbpcggmb5f41zwdrb9xgwpnpn68jz9"; depends=[curl httr jsonlite]; }; elasticIsing = derive2 { name="elasticIsing"; version="0.2"; sha256="1zjgvz7w5j06x2cd1fzjl85di95ah67m1lanw01kic2bvhfwfbn6"; depends=[cvTools glmnet magrittr qgraph reshape2]; }; - elasticnet = derive2 { name="elasticnet"; version="1.1"; sha256="1x8rwqb275lz86vi044m1fy8xanmvs7f7irr1vczps1w45nsmqr2"; depends=[lars]; }; + elasticnet = derive2 { name="elasticnet"; version="1.1.1"; sha256="0p9dplnsp28z4s2fl6afbwrgd0aj339fak8mmndicmrh7bb7rpmb"; depends=[lars]; }; elasticsearchr = derive2 { name="elasticsearchr"; version="0.2.2"; sha256="0jawypqlk8374izh3gq9k6fwc2gwn74xa9lbmx4ww3rq2xp90xw6"; depends=[httr jsonlite]; }; elec = derive2 { name="elec"; version="0.1.2"; sha256="0f7ahrjb52w8a8l5v00xla6z9afpz2zrckl9v04xalp34snhdwan"; depends=[]; }; elec_strat = derive2 { name="elec.strat"; version="0.1.1"; sha256="09196k5c3jsikh98d33bn70izwcbx0wb5ki9fv1ij0dw9mnv4c3p"; depends=[elec]; }; elect = derive2 { name="elect"; version="1.1.2"; sha256="1m79z697abzrddy849kshwqfygji3n56xz0flwa7xrqhx3nqrj3b"; depends=[msm nnet]; }; elections = derive2 { name="elections"; version="1.0"; sha256="0ig3pd1dw978g2sg4ynzd3p15nk6hx17pxvbxfi5rm131mjdmjdm"; depends=[]; }; electionsBR = derive2 { name="electionsBR"; version="0.3.0"; sha256="18aq1yz2l2g4cjbmk18n5vl8x8lkp90xwm82l0bg1z1smyv3agan"; depends=[data_table dplyr haven magrittr]; }; - electoral = derive2 { name="electoral"; version="0.1.0"; sha256="0y4kkxm8vmj4gsan6qyhg28b0b6hgl4fghslk21d8w5w6syln4kh"; depends=[dplyr ineq tibble]; }; + electoral = derive2 { name="electoral"; version="0.1.1"; sha256="0lmw9kwr189dzfxzlns9fmhrdy93ja8jl2s4jir07lichyiavs03"; depends=[dplyr ineq tibble]; }; elementR = derive2 { name="elementR"; version="1.3.6"; sha256="12gg2x6xzms2ni80qdm04bfajg55ff6zkki0y2cz47kq70wzfkmg"; depends=[abind colourpicker devtools EnvStats gdata gnumeric httpuv lmtest outliers R6 reader readODS readxl shiny shinydashboard shinyjs stringr tcltk2 zoo]; }; elevatr = derive2 { name="elevatr"; version="0.1.4"; sha256="0gxwlcfn271p8gf2iqwqbi61kcaahfdghsc0rwm3xxxysjb5a2b2"; depends=[httr jsonlite progress raster ratelimitr sp]; }; elexr = derive2 { name="elexr"; version="1.0"; sha256="1xmrzlp55z6k3psdg4a3x3rsilvq3k37v9r7ydfn80ahvqjz0fqh"; depends=[]; }; elhmc = derive2 { name="elhmc"; version="1.1.0"; sha256="0ngva7rnfj75fq93ycsv929m9ykijp48r7cvd6sfmi0sqsjinax5"; depends=[emplik MASS plyr]; }; elliplot = derive2 { name="elliplot"; version="1.2.0"; sha256="186i4gr8k9bifzssblln8z6wxfmnplls3kc4m2liiz86mzsnim9r"; depends=[]; }; ellipse = derive2 { name="ellipse"; version="0.4.1"; sha256="0g82vc51m3c1k0hnpp2zla6amxxgk2mmkl8ssnsc49jv3599r6hs"; depends=[]; }; - elliptic = derive2 { name="elliptic"; version="1.3-7"; sha256="1bzd5x0yph76jh59ljl875grm52s8xpnmbgww1jjxx0hgkv7938g"; depends=[MASS]; }; - elmNNRcpp = derive2 { name="elmNNRcpp"; version="1.0.0"; sha256="0jl5vr2zszsapdvwcwg1m2li20k377jzyzdrz4inirsqfy5zlymq"; depends=[KernelKnn Rcpp RcppArmadillo]; }; + ellipsis = derive2 { name="ellipsis"; version="0.0.1"; sha256="02mv63ldvlqrcggxidxy5iiikpqia1z4ckjpnd7fjy91lvwy52ka"; depends=[]; }; + elliptic = derive2 { name="elliptic"; version="1.3-9"; sha256="0gw1klhp9l7xjmwgh43wrvwnvvyz7mbnfjn49hxy3yqsi4fjgnw1"; depends=[MASS]; }; + elmNNRcpp = derive2 { name="elmNNRcpp"; version="1.0.1"; sha256="1n71b5pqd1szhmp4q1h9aqgkx7s54f5i3xk5nljwzsn7cyih1kb3"; depends=[KernelKnn Rcpp RcppArmadillo]; }; elo = derive2 { name="elo"; version="1.0.1"; sha256="0dhlac5l68a3jps2hx0bc7qjj8hsr1ha137hcwxnrfdwnki6chlp"; depends=[pROC Rcpp]; }; emIRT = derive2 { name="emIRT"; version="0.0.8"; sha256="17igda5phgfapjzg7dkid5jj49gmwgpadjr27z7s21365i7md9mz"; depends=[pscl Rcpp RcppArmadillo]; }; - embryogrowth = derive2 { name="embryogrowth"; version="7.4"; sha256="10h80jy391bm1avmh347ly3a1vhlhbpfbhrf39xl7x4nwcckd6bp"; depends=[deSolve HelpersMG numDeriv optimx]; }; + embed = derive2 { name="embed"; version="0.0.1"; sha256="1xfk0zvs3bw10bipkqzjdgpz20kyrczk7lhsx6wyg6zrc7i3kk9f"; depends=[broom dplyr keras lme4 purrr recipes rlang rstanarm tensorflow tibble tidyr]; }; + embryogrowth = derive2 { name="embryogrowth"; version="7.4.1"; sha256="1qha6l7q0565fn9yfvp04dmlpf21hr754gh6fpzhqnrh58h371v1"; depends=[deSolve HelpersMG numDeriv optimx]; }; emdbook = derive2 { name="emdbook"; version="1.3.10"; sha256="0880cx6rqm9vgd2zxnd2k0igfl80gy7ak15w36clwlzavab59hmv"; depends=[bbmle coda lattice MASS plyr]; }; - emdi = derive2 { name="emdi"; version="1.1.2"; sha256="135dnc7djxa7kyhaa0rd42m396ccic4mgd5pq4qj8zqgd2swj2aa"; depends=[boot ggplot2 gridExtra HLMdiag maptools MASS moments MuMIn nlme openxlsx parallelMap readODS reshape2 rgeos]; }; + emdi = derive2 { name="emdi"; version="1.1.4"; sha256="0ghsxayv6d6bx9wfj6iafhaw5c6si2mqcpngj763pblnxjix8ag5"; depends=[boot ggplot2 gridExtra HLMdiag maptools MASS moments MuMIn nlme openxlsx parallelMap readODS reshape2 rgeos]; }; emdist = derive2 { name="emdist"; version="0.3-1"; sha256="1z14pb9z9nkd0f2c8pln4hzkfqa9dk9n3vg8czc8jiv0ndnqi7rq"; depends=[]; }; emg = derive2 { name="emg"; version="1.0.7"; sha256="1d4l9kcji6ba137f1qqjl763q2fd6bxryxsarc3iwi3mfi2b580m"; depends=[]; }; - emil = derive2 { name="emil"; version="2.2.8"; sha256="02xjf8ipqr136y3pa375lwpg6h63yvbphhghs9jjxfl2r4fdkvcn"; depends=[data_table dplyr ggplot2 lazyeval magrittr Rcpp tidyr]; }; + emhawkes = derive2 { name="emhawkes"; version="0.9.0"; sha256="1h6map6w66q91s6g1qr9wfk589cbvva1banqrxzzf29g7ihl15vh"; depends=[maxLik]; }; + emil = derive2 { name="emil"; version="2.2.10"; sha256="05f0i33rd9pp7kkpry1v1ysgny3bwi712glxlcj6qm4fmi0ciik6"; depends=[data_table dplyr ggplot2 lazyeval magrittr Rcpp tidyr]; }; emma = derive2 { name="emma"; version="0.1-0"; sha256="0psd8lrbcqla8mkhp0wlassaaimgwlmqy5yv2wwcq59mc5k1v27f"; depends=[clusterSim earth]; }; emme2 = derive2 { name="emme2"; version="0.9"; sha256="035s4h95ychqb14wib0dqbg4sjy9q01fsryr0ri25g1hsi5f8lpm"; depends=[reshape]; }; - emmeans = derive2 { name="emmeans"; version="1.2.2"; sha256="1ivrg1lp6cqffgg8hnfpw65zbkms6fbsgbw8nprbzfvfk7rrd8wd"; depends=[estimability mvtnorm plyr xtable]; }; + emmeans = derive2 { name="emmeans"; version="1.3.0"; sha256="0kdyy4qp332c4yyvp1cnh48h6ks6ffir5rjcv0py0vm3m8c3hh61"; depends=[estimability mvtnorm plyr xtable]; }; emoa = derive2 { name="emoa"; version="0.5-0"; sha256="1wcnsnkdmpcn21dyql5dmj728n794bmfr6g9hgh9apzbhn4cri8p"; depends=[]; }; emojifont = derive2 { name="emojifont"; version="0.5.2"; sha256="0s1as6i5dz2rbd1aashn99fji2iksjzrkdkfi7wqnnxxpmkha3yx"; depends=[ggplot2 proto showtext sysfonts]; }; emon = derive2 { name="emon"; version="1.3.2"; sha256="19khjjpyxvzhzihqq15w02l5v5ryyvxlklz1ch2gkmqcpnvyga32"; depends=[MASS mgcv]; }; emov = derive2 { name="emov"; version="0.1.1"; sha256="04w0bjyxvfb4ky573byp7j9b7x4gqycr5pgpnsl6rzag00zsf45a"; depends=[]; }; + empirical = derive2 { name="empirical"; version="0.1.0"; sha256="0flzb9nps0a5v5yc0jym2kyn20vpjm38a64vj7bda2bbxgdnqgbm"; depends=[]; }; empiricalFDR_DESeq2 = derive2 { name="empiricalFDR.DESeq2"; version="1.0.3"; sha256="0h2mcdw4v3ac6dn0s4z37l4sdzbi12sxrnn0f0gc9z207dyyf6w3"; depends=[DESeq2 GenomicRanges]; }; - emplik = derive2 { name="emplik"; version="1.0-3"; sha256="0b52383m2djdcg9b1a7r10k5pkzljz6dalvbg2gg962ckvpndb11"; depends=[quantreg]; }; - emplik2 = derive2 { name="emplik2"; version="1.20"; sha256="0qdsfmnvds01qa4f112knv905k0fzccrqj9fwaqrqcy48cigm8pd"; depends=[]; }; - emuR = derive2 { name="emuR"; version="1.0.0"; sha256="19740da4m22v9ys1z8q80khf71fjbaisn1f6whgal7p3cinvkcr3"; depends=[base64enc compare DBI dplyr httpuv jsonlite MASS purrr RCurl readr RSQLite shiny stringr tibble uuid wrassp]; }; + emplik = derive2 { name="emplik"; version="1.0-4.3"; sha256="1g4hz85bvw29c77zs0ig487z92jjl682vv457x81l077h0psvk7c"; depends=[quantreg]; }; + emplik2 = derive2 { name="emplik2"; version="1.21"; sha256="1980bwc4fc4rwzlwya030n5rv8rq0s82hnw955mvaxrbmicnqlla"; depends=[]; }; + ems = derive2 { name="ems"; version="1.2.0"; sha256="1ni18bq26hilszv1caslms7z63p9mfph3497nvyshiqvfw17nas8"; depends=[]; }; + emuR = derive2 { name="emuR"; version="1.1.0"; sha256="0677piygsyffrfba2cay74iymkhz3qvbin09v3pz3y0s0s3jxq1c"; depends=[base64enc compare DBI dplyr httpuv jsonlite MASS purrr RCurl readr rlang RSQLite shiny stringr tibble uuid wrassp]; }; emulator = derive2 { name="emulator"; version="1.2-17"; sha256="150yg99qzankcqs74jvp35al9gla5vnfylwaswcw6yryi239mgi8"; depends=[mvtnorm]; }; enaR = derive2 { name="enaR"; version="3.0.0"; sha256="0sy7k8l6b8p34bcf9bpjr1y6qkjkvn77y2w2ws7ivcr1fynrhm5p"; depends=[gdata limSolve MASS network sna stringr]; }; enc = derive2 { name="enc"; version="0.2.0"; sha256="0n4s3abxmpndppm18dcibap2n22xpjzafn5xjskfdfrz3wjfy1kb"; depends=[]; }; @@ -6119,10 +6391,10 @@ in with self; { endogenous = derive2 { name="endogenous"; version="1.0"; sha256="079fmfxl9gf080zq5m1ixmgry9dawg2y6ixbfyc5da5jxf3zk9h8"; depends=[mvtnorm]; }; endorse = derive2 { name="endorse"; version="1.6.0"; sha256="1j75sb2di2c092dilbjj5qsvb52h3zmm7wxflf9kg7xw227wq3zw"; depends=[coda]; }; endtoend = derive2 { name="endtoend"; version="1.0"; sha256="0x8f6h0mznmncqdwvsp2f0x524g5clgvk64qflf373lyn6h1v0ap"; depends=[]; }; - energy = derive2 { name="energy"; version="1.7-4"; sha256="12skvlridfq4jd5mh0yxl79ps0zi2xnlh4hsdgxad0gm7qky8awd"; depends=[boot Rcpp]; }; + energy = derive2 { name="energy"; version="1.7-5"; sha256="15k9dg0a82cs9ypm0wpcsff3il1hzhnnv86dv5ngby1r144czhi4"; depends=[boot Rcpp]; }; energyr = derive2 { name="energyr"; version="0.1.1"; sha256="1mid5f8l6v55pjzfx304a303mkn9b5r3jzmjl2fi2pz4v2jsdw04"; depends=[RgoogleMaps]; }; enetLTS = derive2 { name="enetLTS"; version="0.1.0"; sha256="0lqnhrsg9fnkn8z5crdrajpgavk1knr9z4sbdffpa6q9n8s5pmhr"; depends=[cvTools ggplot2 glmnet reshape robustHD]; }; - english = derive2 { name="english"; version="1.1-3"; sha256="032yc8ls3i6k5il40k3b0n55n2pj8zkm5kackrvsdsslywhainkw"; depends=[]; }; + english = derive2 { name="english"; version="1.1-4"; sha256="0bl2aqirnfb18zd8xmxcil62q38j6xjxs18gzkvg6vdjdajd2y0k"; depends=[]; }; engsoccerdata = derive2 { name="engsoccerdata"; version="0.1.5"; sha256="06fdgjgnk4lwshrkd0jad411x5nz9sxlri9fdhxrf2dr2hik4l8q"; depends=[dplyr magrittr tidyr]; }; enpls = derive2 { name="enpls"; version="6.0"; sha256="07cwxxxsz2rj6d9dhmbfbv1vmk753ca7yy8ssq8lp4lxz3n4cp6p"; depends=[doParallel foreach ggplot2 plotly pls reshape2 spls]; }; enrichR = derive2 { name="enrichR"; version="1.0"; sha256="0lfdr45sdyqhvgz8q4qdbk12mpv86d6id665kq6aaslgr8jggfmn"; depends=[httr rjson]; }; @@ -6138,35 +6410,41 @@ in with self; { entropy = derive2 { name="entropy"; version="1.2.1"; sha256="10vg4818q5g54pv2nn9x5i7pvky5nsv96syy47pz2mgqp1273cpd"; depends=[]; }; envDocument = derive2 { name="envDocument"; version="2.4.0"; sha256="0r7h9p0b0gr2l18mv1ydlamsc0iq474dfhp450mdfnw2q289mhrn"; depends=[]; }; envalysis = derive2 { name="envalysis"; version="0.3.3"; sha256="1ys93g5gxr9x1v4hg98dcpwa40n5xkh1j8drrmpnmxwq6gv01r6r"; depends=[drc ggplot2]; }; - enveomics_R = derive2 { name="enveomics.R"; version="1.3"; sha256="1m97lmgf42ifzafz91g69nnf4q918464xir9cqjjn6ch5i7lvi65"; depends=[fitdistrplus investr modeest sn]; }; + enveomics_R = derive2 { name="enveomics.R"; version="1.4.1"; sha256="1clq688whspmn4z1rdrhfnjc68p1yphw0myllps3gh148hqxh8mp"; depends=[fitdistrplus investr modeest sn]; }; enviGCMS = derive2 { name="enviGCMS"; version="0.5.0"; sha256="0q7kyygfwphd553lgnv8pa0zghcjj4wvq2qyh8lx2plj9fp5am3n"; depends=[animation BiocParallel broom genefilter mixtools MSnbase rcdk RColorBrewer reshape2 rmarkdown shiny xcms]; }; enviPat = derive2 { name="enviPat"; version="2.2"; sha256="1cf1h4v05riivjwil4167sncdxzgxf3r4snx1imjb6s4msx67ibi"; depends=[]; }; enviPick = derive2 { name="enviPick"; version="1.5"; sha256="04q6zwqq2ip8b8h2n1jpgx1bzcvi7lazljs0806wiakbc79x232p"; depends=[readMzXmlData shiny]; }; envirem = derive2 { name="envirem"; version="1.3"; sha256="1axgbjl4wh44vd5r9n9rbxxsi35k806r1kdvrcmmpkzwam6zd2lp"; depends=[raster RSAGA]; }; envlpaster = derive2 { name="envlpaster"; version="0.1-2"; sha256="11a5n40k1ln5gxxvwq1vh4dhmhifhlm89hkhf36qnhj4bjh3v3y0"; depends=[aster aster2 caTools MASS]; }; + envnames = derive2 { name="envnames"; version="0.3.0"; sha256="1gssjkpx7ngxpbn05c3c74myp4131wx032cf27gxvsvnqb6nn7j5"; depends=[]; }; epade = derive2 { name="epade"; version="0.3.8"; sha256="1alvsifc6i71ilm1xxs1d7sqlapb48bqd6z2n4wi6pqcjvwp7bif"; depends=[plotrix]; }; epandist = derive2 { name="epandist"; version="1.1.1"; sha256="0hxgbjns5bk82rgcmykxifnnxcnqdzmkimkkmpdif64zr5g3gjdg"; depends=[]; }; - epanet2toolkit = derive2 { name="epanet2toolkit"; version="0.2.1"; sha256="18drz4pi2mqqwp2ji3a8k6mxh04n8yrwggf2p1k7bg3jchgh0kx3"; depends=[]; }; + epanet2toolkit = derive2 { name="epanet2toolkit"; version="0.3.2"; sha256="0j64riiy7b2v1m8ki6d43jm61s7yjwlx4kxxdvlz3fx1xw7qf522"; depends=[]; }; epanetReader = derive2 { name="epanetReader"; version="0.7.3"; sha256="05pwa6z03qsjwr9pxpbxycsd21p7mf5j5ajyg4yaas5g100s1k8c"; depends=[]; }; epiDisplay = derive2 { name="epiDisplay"; version="3.5.0.1"; sha256="08ym6hcbmajzr4rasdb35fxk79vgpzfc16rmcm34f7f3zzz09dyl"; depends=[foreign MASS nnet survival]; }; - epiR = derive2 { name="epiR"; version="0.9-96"; sha256="0gy2w49mbi9rpxw8bxb5d6i0zddl319ba1wcp24km165h9pvrs9d"; depends=[BiasedUrn survival]; }; + epiR = derive2 { name="epiR"; version="0.9-97"; sha256="06x502f8pyyigafjb1cyc3d0qbvfk1qj5vy7n30lvz9hvp1rgph2"; depends=[BiasedUrn survival]; }; epibasix = derive2 { name="epibasix"; version="1.3"; sha256="0d0087sa8lqw35pn7gdg2qqzw3dvz57sgavymwl1ybcj5d4lsbyk"; depends=[]; }; epicontacts = derive2 { name="epicontacts"; version="1.1.0"; sha256="0f4a1y311z3fxw7ygj6fgsq6d2qn0ivxsjlh742pkmg3jb63s0f3"; depends=[colorspace dplyr igraph magrittr threejs visNetwork]; }; epidata = derive2 { name="epidata"; version="0.2.0"; sha256="0n0100fy65kgw3c7gdmb5z5hmla5ch51b7872snf525a2r581i28"; depends=[dplyr httr jsonlite purrr readr rvest stringi tidyr xml2]; }; + epiflows = derive2 { name="epiflows"; version="0.2.0"; sha256="09ri1p73ih0i08irc06ff169hi5vcl8bdi63b056kzxgmv17yqkp"; depends=[epicontacts geosphere ggmap ggplot2 htmltools htmlwidgets leaflet sp tibble visNetwork]; }; + epimdr = derive2 { name="epimdr"; version="0.6-1"; sha256="1lcl9sk3c958dm225w33kaln76y4x9mkx5y2c9kh8wd0xz891p8v"; depends=[deSolve phaseR polspline shiny]; }; epinet = derive2 { name="epinet"; version="2.1.8"; sha256="10bgq66n99kkz0nhmsz508aypxk57zk19p5l3xrb28n72k4rfgrf"; depends=[network]; }; epiphy = derive2 { name="epiphy"; version="0.3.4"; sha256="04wsppjycnrzrml3zxrpr0xdxxas3hj8rskiivx5vfmfjpwipq4r"; depends=[ggplot2 msm pbapply Rcpp transport]; }; + episcan = derive2 { name="episcan"; version="0.0.1"; sha256="02687f8gpc2czn19lapvazd6mnm8902ay0lhgi3wdrzfhir42m4r"; depends=[]; }; episensr = derive2 { name="episensr"; version="0.9.2"; sha256="1w1228q8q2ysi3xi3m8a9z0c7japj97dssjkzpjcrng094cy82is"; depends=[actuar boot ggplot2 gridExtra llogistic logitnorm plyr reshape trapezoid triangle]; }; - episheet = derive2 { name="episheet"; version="0.2.0"; sha256="15c4xbam9b60xkkgmbswj4raln49hk43pxp2l75a7j1wykgkif95"; depends=[dplyr ggplot2 magrittr tidyr]; }; + episheet = derive2 { name="episheet"; version="0.3.0"; sha256="0lp0hd2xyiyrb9z46fjifcirv1wxfh3dkn5chlkhkzr2s5xvbl76"; depends=[assertthat dplyr ggplot2 magrittr rlang tidyr]; }; episode = derive2 { name="episode"; version="1.0.0"; sha256="1djk36jkvr8xvhfddqg6xsmhxc3yrgivkm8g2hr4n1qixsk1ad8m"; depends=[glmnet Matrix nnls Rcpp RcppArmadillo]; }; episplineDensity = derive2 { name="episplineDensity"; version="0.0-1"; sha256="0nmh97xajnnh54i04yq8fdici4n5xvcbpdbjdbz79483gnils4vn"; depends=[nloptr pracma]; }; epistasis = derive2 { name="epistasis"; version="0.0.1-1"; sha256="0dfh26bs72i01hpxpgpgyiwpmg9mjpib8zynhc5ssxa0skm518wz"; depends=[glasso igraph Matrix tmvtnorm]; }; epitab = derive2 { name="epitab"; version="0.2.2"; sha256="0yi65bblsikwsa9i7wys1mqf6pp6j01kyc8xkyrhs5n62y1k68nc"; depends=[kableExtra knitr MASS survival xml2]; }; epitools = derive2 { name="epitools"; version="0.5-10"; sha256="1qqa2kam3j3mkbgk62g6lwygk2fkdlrpbi27wl37j4dkdkvx013m"; depends=[]; }; - epitrix = derive2 { name="epitrix"; version="0.2.0"; sha256="1699v13478379waxkjsimxsq92ya2vd98kddvsv0dr7fldwl4png"; depends=[digest distcrete stringi]; }; + epitrix = derive2 { name="epitrix"; version="0.2.1"; sha256="13nk31h4rdpla5m0fskv8s1fwx0r2qh4d0j4cf8vnlbl12rwyh57"; depends=[digest distcrete stringi]; }; + eplusr = derive2 { name="eplusr"; version="0.9.3"; sha256="0rwshvgsrrcc21ladkmq2zj5vyzkijn5bcj9aiyqpzrwnpmz5iv4"; depends=[assertthat callr cli crayon data_table fasttime later lubridate processx progress R6 readr RSQLite stringr units uuid]; }; eply = derive2 { name="eply"; version="0.1.2"; sha256="0al44pvqf6ls3dh129vlv3g56hk1nbql09rj0qsb04d9kaz9anrp"; depends=[magrittr]; }; epoc = derive2 { name="epoc"; version="0.2.5-1"; sha256="1r19cvcqf39yf09n3znbdy3dsr7z96yx6zib6031mqqdsxaav5qd"; depends=[elasticnet graph irr lassoshooting Matrix Rgraphviz survival]; }; + epos = derive2 { name="epos"; version="0.1.0"; sha256="0b9r552hbrs281z7pxxw1hxgv9d15qmyzvgk5xsrgh8wivkh4lwp"; depends=[dplyr ggplot2 gridExtra hashmap stringr testthat tidyr TopKLists xtable]; }; epr = derive2 { name="epr"; version="3.0"; sha256="0czfz6qkcpa2qqs3pqii27hgpdvdzfrvxl0ip67v58hamq7kvjfv"; depends=[car lme4]; }; - epubr = derive2 { name="epubr"; version="0.4.0"; sha256="0lh4fw16fb6qisygq8k7yf1cg6gm2yi8fqfsfwlaacb43d12bxzm"; depends=[dplyr magrittr purrr tidyr xml2 xslt]; }; + epubr = derive2 { name="epubr"; version="0.5.0"; sha256="01ggkwv6l7j7zs70s53vjajfh9i0i7zvajmbqq1ij48b3mrc6y05"; depends=[dplyr magrittr purrr tidyr xml2 xslt]; }; epxToR = derive2 { name="epxToR"; version="0.3-0"; sha256="0ckz7cvqsdilfkqap88brh4av9zv1fl3ijs4h4vlwwn7qvdcnhay"; depends=[httr XML]; }; eqs2lavaan = derive2 { name="eqs2lavaan"; version="3.0"; sha256="1lj6jwkfd84h9ldb6l74lrx2pnsl1c0d7mnrcrjkska87djb2nzd"; depends=[lavaan stringr]; }; eqtl = derive2 { name="eqtl"; version="1.1-7"; sha256="0xfr8344irhzyxs9flnqn4avk3iv1scqhzac5c2ppmzqhb398azr"; depends=[qtl]; }; @@ -6174,28 +6452,29 @@ in with self; { equalCovs = derive2 { name="equalCovs"; version="1.0"; sha256="18w7panyd6mhdr3x1iz9fkrw7min22rishs4xhkxgxs3nnyglkrn"; depends=[]; }; equaltestMI = derive2 { name="equaltestMI"; version="0.1.0"; sha256="1zqhgx1x6lqjwqisl3ydb6yqp3jn6x7dgnc57r93v73sjx2j5aiz"; depends=[lavaan]; }; equate = derive2 { name="equate"; version="2.0.7"; sha256="07cji0z139fk70d4wvrpk5m34fq1pfnqrsw336lgnp5a7zp3jz7n"; depends=[]; }; - equateIRT = derive2 { name="equateIRT"; version="2.0-5"; sha256="0pkcg2331yaq05sn7164qvw3zqq5jxzh34k0c48zbam240ga94js"; depends=[mirt statmod]; }; + equateIRT = derive2 { name="equateIRT"; version="2.1.0"; sha256="1g8gs00ralh5zw1fv3xd4c2xrb8gxgb7srcp0hgbpr0f7hw53fjm"; depends=[mirt statmod]; }; equateMultiple = derive2 { name="equateMultiple"; version="0.0.0"; sha256="0q29bv8bb0c3sprhnkbbpn31phw37dwgk23v5ny4abzvlcgwncdb"; depends=[equateIRT numDeriv Rcpp RcppArmadillo statmod]; }; equivalence = derive2 { name="equivalence"; version="0.7.2"; sha256="170l5gnk0dkjkfsx7qyrw56ircwsjzz9cvhakgyrqh7bj5734i79"; depends=[boot lattice PairedData]; }; - erah = derive2 { name="erah"; version="1.0.5"; sha256="00vygdrngbp53wip2x6dni3ygwax309i9si3gyqkxxbbkpv24b7i"; depends=[caTools HiClimR igraph ncdf4 nnls osd quantreg Rcpp signal XML]; }; + erah = derive2 { name="erah"; version="1.1.0"; sha256="1jp75z9y97v0dr656qqcf3npsijk91x5f2lyiwjy54yrzlf5bxp5"; depends=[igraph ncdf4 nnls quantreg Rcpp signal XML]; }; erboost = derive2 { name="erboost"; version="1.3"; sha256="09hlpn6mqsmxfrrf7j3iy8ibb2lc4aw7rxy21g3pgqdmd9sbprim"; depends=[lattice]; }; ercv = derive2 { name="ercv"; version="1.0.0"; sha256="1h0v0gscf1ks1shkdvkn1g8r8x5jsb66a4m7rnpdfwbp2ijh41gp"; depends=[]; }; erer = derive2 { name="erer"; version="2.5"; sha256="0wgzd7r63d20vghmbilqn1p5033i5p31asya1gzwlipgyfxmqp0b"; depends=[lmtest systemfit tseries urca]; }; - ergm = derive2 { name="ergm"; version="3.8.0"; sha256="1j4rqgxnwg4hcjg2knw3kvwad97035fxp9dqxx4pz6nlkmcib2js"; depends=[coda lpSolve MASS Matrix network robustbase statnet_common trust]; }; - ergm_count = derive2 { name="ergm.count"; version="3.2.2"; sha256="1zg07vm5y6n6r687sbdy5hcinsircm4zzkx5w4849s9kwjlnpn0b"; depends=[ergm network statnet_common]; }; - ergm_ego = derive2 { name="ergm.ego"; version="0.3.0"; sha256="1152g9zz2wach0hbj27knxficvhf062alqa0wpj6nyqj2vsgnchh"; depends=[coda ergm network RColorBrewer statnet_common]; }; - ergm_graphlets = derive2 { name="ergm.graphlets"; version="1.0.3"; sha256="0xk45ialjckvjs96k19skk7imilcahgyzfwc74h6yand5q3mg6fz"; depends=[ergm network statnet_common]; }; - ergm_rank = derive2 { name="ergm.rank"; version="1.0.1"; sha256="0k5ffqxn9fspbg82j2cmrcyav3nqjk7cnsq48xwy9i3z3vaq704k"; depends=[ergm network statnet_common]; }; - ergm_userterms = derive2 { name="ergm.userterms"; version="3.1.1"; sha256="0pvklvyxi7sjc5041zl8vcisni0jz1283gyjw5mhas9bl47g1cwc"; depends=[ergm network statnet_common]; }; + ergm = derive2 { name="ergm"; version="3.9.4"; sha256="0bmxha66p6i0sk9csav4wv9v7bz153c7zgwfdd1q8abmiwxpi3al"; depends=[coda dplyr lpSolve MASS Matrix network purrr rlang robustbase statnet_common tibble trust]; }; + ergm_count = derive2 { name="ergm.count"; version="3.3.0"; sha256="184kxbabrdm8ywmr8pmz34wqyrv6712abggb2pf3mpiv7nblqjz1"; depends=[ergm network statnet_common]; }; + ergm_ego = derive2 { name="ergm.ego"; version="0.4.0"; sha256="07r0wfx1414d54l5y43axkp1av9ig1bwyxs8011w2grkmxhawavj"; depends=[coda ergm network purrr RColorBrewer rlang statnet_common tibble]; }; + ergm_rank = derive2 { name="ergm.rank"; version="1.1.0"; sha256="0mzwi5a3mf46nw8m1yychqnvysrps46dn8pp0xliyhcs4h0c3y0l"; depends=[ergm network statnet_common]; }; + ergm_userterms = derive2 { name="ergm.userterms"; version="3.9.0"; sha256="0nccz7qwrn20xd78dlnq2dfb8167s9jglvk40wa0lmcjlz8x62n3"; depends=[ergm network statnet_common]; }; ergmharris = derive2 { name="ergmharris"; version="1.0"; sha256="1bfijhsljlykb94wi25lbpv35zkmgqpmgzmxcq98gjvzbn5j9pdq"; depends=[]; }; - erhcv = derive2 { name="erhcv"; version="0.1.2"; sha256="1rbgp5ba7drghfgcjfg546210m7pknfmgcbk4n68jpy39c267rvn"; depends=[igraph Rdpack stringi stringr]; }; + erhcv = derive2 { name="erhcv"; version="0.1.3"; sha256="01wrjrcvpavw0yd4vhhyiyjda3m4mrh4dirh1a48bwy10nvfb4x0"; depends=[igraph Rdpack stringi stringr]; }; erp_easy = derive2 { name="erp.easy"; version="1.1.0"; sha256="193n45w0rq3cy0nmxvv0h6s3yr8kfjlg90nd4dnqlsq85zlsizij"; depends=[gtools plyr signal]; }; erpR = derive2 { name="erpR"; version="0.2.0"; sha256="1y6abc5fkcyyjh36maj1zbxppqzwd5wkvzvqahyvzsz5fqpjkcdx"; depends=[rpanel]; }; + err = derive2 { name="err"; version="0.0.1"; sha256="0mkd5hr5pd7zqqbs205whcjm0gsg6sn5nd5abw7i46v0rq4xxvfp"; depends=[]; }; errint = derive2 { name="errint"; version="1.0"; sha256="1ya7fsvwhmgxw87r32m4345n8pw2pbpv026xvml03s1kiam8qwbw"; depends=[rootSolve VGAM]; }; errorist = derive2 { name="errorist"; version="0.0.1"; sha256="1569yvncc9rdzchs7cvx44dhy8xf10g2hwkiy3kp68h47qghxlbd"; depends=[searcher]; }; errorizer = derive2 { name="errorizer"; version="0.2.1"; sha256="10p7ydm81x2gls0wn692llgj2rxhg4s96rv7gvihmgi5dflraypq"; depends=[]; }; errorlocate = derive2 { name="errorlocate"; version="0.1.3"; sha256="0hfm0nad1bfh7a37zpn4aljrf69yc6dddz9iq46c1mzyrw116a9f"; depends=[lpSolveAPI validate]; }; - errors = derive2 { name="errors"; version="0.2.1"; sha256="1hf7nqyhyv0n4qn5bzs1gb59fbn6vsiji0va8hpzzw3af0h3dqzy"; depends=[]; }; + errors = derive2 { name="errors"; version="0.3.0"; sha256="1mdsqnsrrrx0fqpasllv05j2m1ykv6qj8il0647i9sxfqmsijjhk"; depends=[uuid]; }; + esDesign = derive2 { name="esDesign"; version="1.0.0"; sha256="0d56zg9wvkds4jqrw3gdyz2hgyrhsghky3cbjfkgfba4lzing8zn"; depends=[]; }; esaBcv = derive2 { name="esaBcv"; version="1.2.1"; sha256="0hgjcdbiy1a71vsb2vcyp0xmhy6wi4nlh1sqsfb2vxckc95i9i21"; depends=[corpcor svd]; }; esaddle = derive2 { name="esaddle"; version="0.0.3"; sha256="04imppwls6a485kdfwykk4s0pyxas3i92ccghi780ys29y0nggmy"; depends=[doParallel mvnfast plyr Rcpp RcppArmadillo]; }; esaps = derive2 { name="esaps"; version="0.1.0"; sha256="1rchs4i7n221gyhj9kbka4zmi2lf72q3ak2pdxkr7w6pcx6803yz"; depends=[plyr readODS readxl]; }; @@ -6204,22 +6483,22 @@ in with self; { eshrink = derive2 { name="eshrink"; version="0.1.0"; sha256="0s1jl652za7qwv70kmc1h3vbwlijl49527pwpm0z347lz2jdcigj"; depends=[glmnet MASS]; }; esmisc = derive2 { name="esmisc"; version="0.0.3"; sha256="1d6xrdxwn85c8s60s7vzaymh7wa9f7fzd79hq5spzd12fr3zisvj"; depends=[ggplot2 raster readr]; }; esmprep = derive2 { name="esmprep"; version="0.1.4"; sha256="1d1rr11fldxsamn19za03sdyvvybkh3bm5zvlrlkz022jj7pgxlr"; depends=[lubridate]; }; + esquisse = derive2 { name="esquisse"; version="0.1.6"; sha256="0s9qp87n741wsg8sazpyzx4br7pd2p3wmipiig4bj71n7wy3wvwa"; depends=[ggplot2 ggthemes htmltools jsonlite miniUI RColorBrewer rstudioapi scales shiny shinyWidgets stringi]; }; esreg = derive2 { name="esreg"; version="0.3.1"; sha256="19ikfy0g8yd224ah4gyq2k29lz3gagc6vrcv53awvdadqw0cpz8l"; depends=[quantreg Rcpp RcppArmadillo]; }; - ess = derive2 { name="ess"; version="0.1.1"; sha256="1i94sfg8r9mnzcmyddq3zb56gwkgqdclyx90a5plpyy5insk13d7"; depends=[haven httr rvest stringr tibble xml2]; }; essHist = derive2 { name="essHist"; version="1.1.1"; sha256="06wmvwjgbb1bfsjn4bv3p2m0i5nc6shn2p62kjp3iv6z42f5wndc"; depends=[Rcpp]; }; - essurvey = derive2 { name="essurvey"; version="1.0.1"; sha256="0ks2qx6pzw5g1q6hzaymlcy6slkapw8iajn10gs7l1h5ybdf5w6l"; depends=[haven httr rvest stringr tibble xml2]; }; + essurvey = derive2 { name="essurvey"; version="1.0.2"; sha256="0r1hkdksidx974pi08hg25qlzfxazqmzamwqg2njks2r9xk299p8"; depends=[haven httr rvest stringr xml2]; }; estatapi = derive2 { name="estatapi"; version="0.3.0"; sha256="0gjc5x1b2l5qnwdg77nzy6d7bf9q93ll39sfy89izqm8wsydwwkp"; depends=[dplyr httr purrr readr]; }; estimability = derive2 { name="estimability"; version="1.3"; sha256="0cifdaa71spkcxl4db4z884jrya865sg3dhcv4isd8fnzg2pjcd3"; depends=[]; }; - estimatr = derive2 { name="estimatr"; version="0.8.0"; sha256="0xn1rk5z5n9llg9l55wab2lpcvx3azbrkjrfwi84mc3xk1m24y3p"; depends=[Formula Rcpp RcppEigen rlang]; }; + estimatr = derive2 { name="estimatr"; version="0.12"; sha256="1xqhbr8dp86vli1da47whl130ljdn8l6h8j1lgsa12dfkz5amj6d"; depends=[Formula Rcpp RcppEigen rlang]; }; estout = derive2 { name="estout"; version="1.2"; sha256="0whrwlh4kzyip45s4zifj64mgsbnrllpvphs6i5csb7hi3mdb3i5"; depends=[]; }; estprod = derive2 { name="estprod"; version="1.1"; sha256="15grcpyhaazd1sl8544gx4zpjqi9p17d6siyb6a1ykzzyy1v1fln"; depends=[boot Formula gmm lazyeval minpack_lm]; }; estudy2 = derive2 { name="estudy2"; version="0.8.5"; sha256="0aqvlgzp98965xmjmmg2dxj79bjcvgv0qa89h5l1lp0i0c23p908"; depends=[matrixStats quantmod Rcpp zoo]; }; esvis = derive2 { name="esvis"; version="0.2.0"; sha256="0l4c87l9n94q14hwky7d7i4h9c5zh8r04zlcz9w4mx7ixfd34zir"; depends=[sfsmisc]; }; etable = derive2 { name="etable"; version="1.2.0"; sha256="17xahaf2fz1qgqjaw8qbnss95il6g47m3w00yqc5nkvv37gs0q7c"; depends=[Hmisc xtable]; }; etasFLP = derive2 { name="etasFLP"; version="1.4.0"; sha256="04d526yajakzivlcsz8631p0j482cbbgfpdmzkc9zr1m4495xxif"; depends=[fields mapdata maps rgl]; }; - ether = derive2 { name="ether"; version="0.1.4"; sha256="1q6qxda5iw8zj7gy9h35apij5mbndd969ddip7zn5d720131kqra"; depends=[dplyr httr jsonlite Rmpfr]; }; + ether = derive2 { name="ether"; version="0.1.5"; sha256="03skydbw4ch0lhhlm57qgg4q0vyd4rwzsq3v2w40jrczpxpdsn9q"; depends=[dplyr httr jsonlite Rmpfr]; }; etl = derive2 { name="etl"; version="0.3.7"; sha256="045hkh95ki3s10l9mz4710ws2i9and4rqb0qk1c5sfslglc0riq5"; depends=[DBI downloader dplyr lubridate readr rlang rvest stringr tibble xml2]; }; - etm = derive2 { name="etm"; version="1.0.3"; sha256="1srbllbmc2l1kcw2zi15sja8g3bkwz8bvy7k8al45dhyz8zdrxra"; depends=[data_table lattice Rcpp RcppArmadillo survival]; }; + etm = derive2 { name="etm"; version="1.0.4"; sha256="0ws103b3pmli0z4xbyfxkly2wnnnxnnwc0r66qjjqjrlvm7pffl1"; depends=[data_table lattice Rcpp RcppArmadillo survival]; }; etma = derive2 { name="etma"; version="1.1-1"; sha256="0g9244yx50y1gw0f37hskbcgyv4nldmzr86v3rmf3afabmjbyzjj"; depends=[]; }; etrunct = derive2 { name="etrunct"; version="0.1"; sha256="0ayazgyqlc8jcqr03cwfmfhm4pck6xri1r6vkgqy4arqkrrnrcqr"; depends=[]; }; etseed = derive2 { name="etseed"; version="0.1.0"; sha256="1kqbhvryqzmckk91ynn68yd7msqdsl6h818r164180f10flszr37"; depends=[httr jsonlite R6]; }; @@ -6227,10 +6506,10 @@ in with self; { eulerr = derive2 { name="eulerr"; version="4.1.0"; sha256="1y4s4g49sy7bkkbadj7a8la86h9yy9lzra5jawy2ig1aa3k81d98"; depends=[GenSA lattice polyclip Rcpp RcppArmadillo]; }; europepmc = derive2 { name="europepmc"; version="0.3"; sha256="1ngqs1sqzkbwv98dd5z4cxj8bnz41wyd0g060a2vpqi3s99s4i2h"; depends=[dplyr httr jsonlite plyr progress purrr urltools xml2]; }; europop = derive2 { name="europop"; version="0.3.1"; sha256="1ym257bxr4a0dmln1j8x3pf87wrryzgqyzhvk61whc6n2bj62x1s"; depends=[]; }; - eurostat = derive2 { name="eurostat"; version="3.2.1"; sha256="1934lzxzs0l96c3bwwy5lpgm8kxrd55hdcmbn4prg2pzzj32wxfv"; depends=[broom classInt curl dplyr httr jsonlite RColorBrewer readr sf sp stringi stringr tibble tidyr]; }; - eva = derive2 { name="eva"; version="0.2.4"; sha256="03jsiz6bkavwxpgllxaw8czahmm2rh5h8hhk5j7i9clcjx244vvj"; depends=[EnvStats Matrix]; }; - evaluate = derive2 { name="evaluate"; version="0.10.1"; sha256="070vvmnbdlp7sz2zhza7fhd2a6mlwiln8fn4hyzhsiizbn4n79y9"; depends=[stringr]; }; - evaluator = derive2 { name="evaluator"; version="0.3.0"; sha256="1dgihzai2p47zjfjb4wnl5rvwahfsxcaqaywdsf039p0g820nr8f"; depends=[dplyr extrafont furrr ggplot2 mc2d purrr readr readxl rlang scales stringi tibble tidyr viridis]; }; + eurostat = derive2 { name="eurostat"; version="3.2.9"; sha256="0nwsjyhyflsq48kf8w6x3fv2qscqq0pz0dl93s221nbgd94qlyad"; depends=[broom classInt dplyr httr jsonlite RColorBrewer readr sf sp stringi stringr tibble tidyr]; }; + eva = derive2 { name="eva"; version="0.2.5"; sha256="03hyzbqi2mgdrmzrjnwzvy0ndf7ha5959b63sgd1g0b998fibbmd"; depends=[EnvStats Matrix]; }; + evaluate = derive2 { name="evaluate"; version="0.12"; sha256="11rpn40153kcvqqrfhg2ldqfs68frg6yzsl0k3rxnlnv4c0v008g"; depends=[]; }; + evaluator = derive2 { name="evaluator"; version="0.3.1"; sha256="1xyj8nc74dg2si6j4j9d35wa0qsymskpkpfd89acl0dcs07sg62j"; depends=[dplyr extrafont furrr ggplot2 mc2d purrr readr readxl rlang scales stringi tibble tidyr viridis]; }; evclass = derive2 { name="evclass"; version="1.1.1"; sha256="00lbhcgswpv0amz0mb93kx9p91sf0d7zvxfw9i8x1zpmpfd6nhcj"; depends=[FNN]; }; evclust = derive2 { name="evclust"; version="1.0.3"; sha256="0cd0a8w0ixd9ilcqlxiaql4l2r49qrqnllb9qpg3xgnlxka3yb5m"; depends=[FNN limSolve Matrix R_utils]; }; evd = derive2 { name="evd"; version="2.3-3"; sha256="1d2r8ppblxrq6s60pf0gv4rp8ja58j8lbpax8a996ais1hpfzi9g"; depends=[]; }; @@ -6239,6 +6518,7 @@ in with self; { eventInterval = derive2 { name="eventInterval"; version="1.3"; sha256="0nybzy2mpmazcvz06mkv7l9741mjm3i2q2sindq0777vb2k4504v"; depends=[MASS]; }; eventdataR = derive2 { name="eventdataR"; version="0.2.0"; sha256="11apbbj68x1kxpwvihf4ng7wxy54jl1aw7r9hyq6gn7h8sk6lpjn"; depends=[]; }; events = derive2 { name="events"; version="0.5"; sha256="1zka4ygymifs8snd7cabl11b5lg3f8g8370dkm9ybl40bn8vvqq2"; depends=[]; }; + evian = derive2 { name="evian"; version="2.0.0"; sha256="18j8yl647xwr02mr0f8v9jwrqm0mr6s2jfhsanl4ggyq2v7nyw1d"; depends=[doParallel foreach ProfileLikelihood sandwich]; }; evidence = derive2 { name="evidence"; version="0.8.10"; sha256="02kqk95kx4nv13fg6z55a5rv6sq6lv8azg0jjxbkg1j6hg15p7ai"; depends=[LaplacesDemon lattice LearnBayes loo rstan rstanarm]; }; evidenceFactors = derive2 { name="evidenceFactors"; version="1.00"; sha256="12wndimbygn7h57f3q0xmxmvqrcdj98f0a58m22z2l0vmym53rhb"; depends=[sensitivitymv]; }; evir = derive2 { name="evir"; version="1.7-4"; sha256="1h7a7z7v5k33y5hsdfczsri3vpbwspfgazhv4saknv2h11rgfpki"; depends=[]; }; @@ -6246,35 +6526,36 @@ in with self; { evobiR = derive2 { name="evobiR"; version="1.1"; sha256="0502xj1gv2g943vfqyllz4sr5z4mixf5vqlqi2v96mymnv9iwsr8"; depends=[ape geiger phytools seqinr shiny]; }; evolqg = derive2 { name="evolqg"; version="0.2-5"; sha256="11n0gxkxhg1d2ziwbipqvyccgnsrzm3mk4xy2d7nxn662q1yl2ah"; depends=[ape coda expm ggplot2 igraph Matrix matrixcalc MCMCpack mvtnorm plyr Rcpp RcppArmadillo reshape2 vegan]; }; evolvability = derive2 { name="evolvability"; version="1.1.0"; sha256="0lbyidb86yzvcfw86jfwnzbpijn64jr8fasycqq4h3r9c0x2by3j"; depends=[coda]; }; - evoper = derive2 { name="evoper"; version="0.4.0"; sha256="11l55jj7f4ggwvimvl3d2sv2nyds29bl4dai6ycpgnff7wwdv43g"; depends=[boot deSolve futile_logger ggplot2 plot3D plyr reshape rrepast]; }; + evoper = derive2 { name="evoper"; version="0.5.0"; sha256="064fcpd04ws8v6sl0bakiw34jmmfpg1w5pkq94y2gh1c576x4vwz"; depends=[boot data_table deSolve futile_logger ggplot2 plot3D plyr reshape RNetLogo rrepast]; }; evt0 = derive2 { name="evt0"; version="1.1-3"; sha256="08sbyvx49kp3jsyki60gbbnci26d6yk0yj2zcl4bhfac8c3mm6ya"; depends=[evd]; }; evtree = derive2 { name="evtree"; version="1.0-7"; sha256="1swq4cmx7hvsagn1nfavay5rg5r5axjxpcckvd3sy6lgvwvflcnq"; depends=[partykit]; }; ewoc = derive2 { name="ewoc"; version="0.2.0"; sha256="0kanx14fhcbqz6gpyj7628vgy9fwz3ji5mkd4107b8pgpz2hkg00"; depends=[coda doParallel foreach Formula ggplot2 rjags]; }; exCon = derive2 { name="exCon"; version="0.2.5"; sha256="0gqnv01dw4ncf3x3p74pc6f14a1ixq7icl2p18hsmvxdqqg7kgy7"; depends=[jsonlite]; }; - exact2x2 = derive2 { name="exact2x2"; version="1.6.2"; sha256="172g6ahgd7j42bjidp6svjl70ws3bz58vb8vxgnalii6awcizkcm"; depends=[exactci ssanv]; }; + exact2x2 = derive2 { name="exact2x2"; version="1.6.3"; sha256="11ayh6j6jj4p4bns3s2c2nmnigdzr6hpwjp4b2i7qw67kd321agn"; depends=[exactci ssanv]; }; exactLoglinTest = derive2 { name="exactLoglinTest"; version="1.4.2"; sha256="0j146ih9szzks9r45vq1jf47hrwjq081q1nsja5h1gpllks8217h"; depends=[]; }; exactRankTests = derive2 { name="exactRankTests"; version="0.8-29"; sha256="0sj4bf0sab2rsgh967i5jl7ml2l1niydqmyn7c6ybai1gavsdpi1"; depends=[]; }; exactci = derive2 { name="exactci"; version="1.3-3"; sha256="03r35f6dyrck5pf43ypb1sjwfnvkhjkm1mbms3wh67ayfs2ypn0s"; depends=[ssanv]; }; exactmeta = derive2 { name="exactmeta"; version="1.0-2"; sha256="1v807ns799qajffky4k18iah0s3qh2ava6sz5i85hwx9dhkz19h4"; depends=[]; }; - exampletestr = derive2 { name="exampletestr"; version="1.3.0"; sha256="1z4lw115y5ijjb603rvy63a5gvhgymkq00ak0z6da2y5p6ym5rp3"; depends=[checkmate devtools filesstrings magrittr ore purrr readr roxygen2 rprojroot stringr styler]; }; + exampletestr = derive2 { name="exampletestr"; version="1.4.0"; sha256="1k3qq0cqg1ksll3xa26cyr3yf1wcpl6sy013rs8lcid30cgn1pqp"; depends=[checkmate clisymbols crayon devtools filesstrings fs glue magrittr ore purrr readr rlang roxygen2 rprojroot stringr styler usethis]; }; exams = derive2 { name="exams"; version="2.3-1"; sha256="0xg2rvfw61q5g9aj828219fqdnrwhy698xy7mkrcaly9mq95zs8b"; depends=[]; }; excerptr = derive2 { name="excerptr"; version="1.4.1"; sha256="0z5gayf7kkhdg7ad2w4ycar5dd42jdjybrhzfmkqb3xr9pdrnijg"; depends=[git2r rprojroot rPython]; }; - excursions = derive2 { name="excursions"; version="2.3.3"; sha256="16clwp76hq1q3m7ixjq1rv83vagxyj2fcs4jdsgvl9pzh5syzd3x"; depends=[Matrix sp]; }; + excursions = derive2 { name="excursions"; version="2.4.4"; sha256="140p0vks40vsj1bi89rhdqih5jh7795pxzzqm9140vfiv8b0aya5"; depends=[Matrix sp]; }; exif = derive2 { name="exif"; version="0.1.0"; sha256="12phqn5x1x0xs2xczl3064q983dalm261vqpyafhdcndm1y3gwbc"; depends=[Rcpp]; }; - exifr = derive2 { name="exifr"; version="0.2.1"; sha256="0969ip7vwhs3r9zwy5l1gqg886yl4gfw8ss2frnq9nmqpn1ib1v2"; depends=[curl dplyr jsonlite purrr tibble]; }; + exifr = derive2 { name="exifr"; version="0.2.2"; sha256="1na5d28x2s6lgwydfnhjvkya8kwsf4nh894f1inhzchk7g5cj475"; depends=[curl dplyr jsonlite purrr tibble]; }; + exiftoolr = derive2 { name="exiftoolr"; version="0.1.1"; sha256="0qip3r2vvxj0ax2pf150hmka70yiv9k2vlfj5pxyminri7scvf39"; depends=[curl jsonlite]; }; exp2flux = derive2 { name="exp2flux"; version="0.1"; sha256="1b3ychb4wcf6dbccx2ddms5xygdgc296cnw4474fm81yrfjznplv"; depends=[gage igraph sybil]; }; expandFunctions = derive2 { name="expandFunctions"; version="0.1.0"; sha256="0661l4ab0xhjidmh8ycvymhp3wgxafm7nd1c59bfpxhyhz76n1p4"; depends=[glmnet orthopolynom plyr polynom]; }; expands = derive2 { name="expands"; version="2.1.2"; sha256="15r5wld63kwk3kcl5x09dj0n1mgcl076lcjsmf0vbh10x4n0avrk"; depends=[ape commonsMath flexclust flexmix gplots matlab moments NbClust plyr RColorBrewer rJava]; }; experiment = derive2 { name="experiment"; version="1.1-4"; sha256="08d9m72l6n2ygy5x8aakzv3n71ybqy1i8yzv55f7r4w1kk4pbk5i"; depends=[boot MASS]; }; expert = derive2 { name="expert"; version="1.0-0"; sha256="0y9vcigvzhymalpv31b9nvmr86z1dz7x29yj838vks0dsv23rgrf"; depends=[]; }; expint = derive2 { name="expint"; version="0.1-5"; sha256="12ki8j17p070kq2mdzzai755wy1n6kvinax0ldd63kynij9n0gdh"; depends=[]; }; - explor = derive2 { name="explor"; version="0.3.3"; sha256="1b3swb7ikp2ik3300ljg2rll5gka4l4lfg95bqbgap3ph4dclv7y"; depends=[dplyr DT ggplot2 highr scatterD3 shiny tidyr]; }; + explor = derive2 { name="explor"; version="0.3.4"; sha256="1gdahxglpk7wyf89ixqaqw95rzac4kii2qyxkk3b26hg5chfnd7k"; depends=[dplyr DT ggplot2 highr scatterD3 shiny tidyr]; }; exploreR = derive2 { name="exploreR"; version="0.1"; sha256="154j5wiiy9vqdvh1qvdkz2fdp2phcygbbjl7nj5nkn07xwxbsc77"; depends=[ggplot2]; }; - expm = derive2 { name="expm"; version="0.999-2"; sha256="1mihl67kvv1xv0figp25jkmwfn4iwkcx15cng2348y8gm6zybw9q"; depends=[Matrix]; }; + expm = derive2 { name="expm"; version="0.999-3"; sha256="04k4a6g071jkjc0d30ncmf713dj16brcs9m6pj43hnycc1caq6si"; depends=[Matrix]; }; expoRkit = derive2 { name="expoRkit"; version="0.9.2"; sha256="0qlzz86cyfz2yyynz8bj28086d1pc93gvjy1idip80m7z6vsrsxq"; depends=[Matrix SparseM]; }; expoTree = derive2 { name="expoTree"; version="1.0.1"; sha256="0hj1x4niqp0ghqik3mz733nc3zpnhyknrdpzpj6y2rfia2ysdiz8"; depends=[ape deSolve]; }; expp = derive2 { name="expp"; version="1.2.2"; sha256="0xr24xzplgamj8dkjk9n9jmrbyw056z57hkm9h4j43g63vxrinlj"; depends=[deldir rgeos sp spatstat spdep]; }; - exprso = derive2 { name="exprso"; version="0.3.6"; sha256="0df3c79iscgrdj14d82vibsxz85zb99j55b3r6jw0zqs5czd8rhd"; depends=[cluster e1071 frbs gtools kernlab lattice MASS nnet plyr randomForest ROCR rpart sampling]; }; + exprso = derive2 { name="exprso"; version="0.4.0"; sha256="122bh96hhn2wbwjlrnrb9s9bkfd2wp43vsyr8glxrd47mdvm2i9v"; depends=[cluster e1071 frbs kernlab lattice MASS nnet plyr randomForest ROCR rpart sampling]; }; expsmooth = derive2 { name="expsmooth"; version="2.3"; sha256="0alqg777g7zzbjbg86f00p2jzzlp4zyswpbif7ndd0zr8xis6zdc"; depends=[forecast]; }; expss = derive2 { name="expss"; version="0.8.7"; sha256="1p0jzqbjagx00qwjhsjyvmqijlp33qjhj7k9b8rddibvg9ysmcji"; depends=[data_table foreign htmlTable magrittr matrixStats]; }; exptest = derive2 { name="exptest"; version="1.2"; sha256="0wgjg62rjhnr206hkg5h2923q8dq151wyv54pi369hzy3lp8qrvq"; depends=[]; }; @@ -6287,14 +6568,15 @@ in with self; { extfunnel = derive2 { name="extfunnel"; version="1.3"; sha256="162w5b2wjs3yqy8jisamsapav6swa8sskf1b6x5hglnrv3i4qyyy"; depends=[rmeta]; }; extlasso = derive2 { name="extlasso"; version="0.2"; sha256="05774y0i01lrbyws6zx5ymhcglllv1wc7gzrnyx8i5d1lxdinsyd"; depends=[]; }; extraBinomial = derive2 { name="extraBinomial"; version="2.1"; sha256="0qmvl35f7n78kghszwyaz4wzbswqy4p98c3b6alzrc2ldsq6pq5z"; depends=[]; }; - extraDistr = derive2 { name="extraDistr"; version="1.8.9"; sha256="1fg8vjpal33y51iqzglk1yvy46d7js0l0wfbdy698lq8a06hq19p"; depends=[Rcpp]; }; + extraDistr = derive2 { name="extraDistr"; version="1.8.10"; sha256="00lvqp5bb3iak5myiz4rqm887bkq9sdh7aybmz84mmfni6q01m28"; depends=[Rcpp]; }; extraTrees = derive2 { name="extraTrees"; version="1.0.5"; sha256="1rvvp2p9j8ih8fid1n17606pa23bjg3i2659w1l6w0jkb1p23zcx"; depends=[rJava]; }; - extracat = derive2 { name="extracat"; version="1.7-5"; sha256="1jj3mkn7s0m4dhnbrqhhxx6k2macmjjrmd7v7rqb5wivj5g7b89v"; depends=[colorspace data_table ggplot2 hexbin plyr reshape2 scales TSP]; }; + extracat = derive2 { name="extracat"; version="1.7-6"; sha256="1a4ppfr9lsr1hlbf6m47sm8kflq8rp2khp1vc9xmnr9jxlwz3l2d"; depends=[colorspace data_table ggplot2 hexbin plyr reshape2 scales TSP]; }; extrafont = derive2 { name="extrafont"; version="0.17"; sha256="0b9k2n9sk23bh45hjgnkxpjyvpdrz1hx7kmxvmb4nhlhm1wpsv9g"; depends=[extrafontdb Rttf2pt1]; }; extrafontdb = derive2 { name="extrafontdb"; version="1.0"; sha256="115n42hfvv5h4nn4cfkfmkmn968py4lpy8zd0d6w5yylwpzbm8gs"; depends=[]; }; extremeStat = derive2 { name="extremeStat"; version="1.4.0"; sha256="0fvkvlm47ri05w9h5qa937ijsc5lg51jc825wq9pmn7aiv58yxzm"; depends=[berryFunctions evd evir extRemes fExtremes ismev lmomco pbapply RColorBrewer Renext]; }; extremefit = derive2 { name="extremefit"; version="0.2.3"; sha256="1m2960qbs2qha4975sq5awsvlk10s1mgb3cm91fyrm6lh50plv5m"; depends=[]; }; extremevalues = derive2 { name="extremevalues"; version="2.3.2"; sha256="0pyngxljdnjwnbwcb0gmxcirv70r1s1wyq4m1wm5rprpdj8v9xil"; depends=[gWidgets gWidgetstcltk]; }; + extremis = derive2 { name="extremis"; version="0.90"; sha256="1cnwn70d9swks5b2y915l18gky9v23vaqlaaggshi0ghn3snb4sm"; depends=[emplik]; }; extremogram = derive2 { name="extremogram"; version="1.0.2"; sha256="13k869v6j4ik9p8w0gf1absvb45xbd3nnwghsz0ix7y0vyvry358"; depends=[boot MASS]; }; exuber = derive2 { name="exuber"; version="0.1.0"; sha256="0jm0kxw7f4pzy162alp0q9kxgyrg2qllhxl7ijaq5qx4wnyhab3m"; depends=[doParallel dplyr foreach ggplot2 purrr Rcpp rlang]; }; eyelinker = derive2 { name="eyelinker"; version="0.1"; sha256="1lwpm247czqm26zvv5c6lkhdxpp4svszfw74g9ys9vwvwhry9c15"; depends=[intervals magrittr plyr readr stringi stringr]; }; @@ -6314,7 +6596,7 @@ in with self; { fCertificates = derive2 { name="fCertificates"; version="0.5-4"; sha256="1a49gkzvb83lqqw65lxlaszpicn663hwi9wrbsb3f6z7znylkzaf"; depends=[fBasics fExoticOptions fOptions]; }; fChange = derive2 { name="fChange"; version="0.1.0"; sha256="1pj4q9dsqqgv198kfv410qkpgynhd580bcsigmak598m5jx3rf7l"; depends=[fda lattice reshape2 sandwich sde]; }; fCopulae = derive2 { name="fCopulae"; version="3042.82"; sha256="10wknqrrs5j63v7qnp5qmk85688r36vli4r99i49y2i2nv10yp5r"; depends=[fBasics fMultivar timeDate timeSeries]; }; - fDMA = derive2 { name="fDMA"; version="2.2.3.1"; sha256="0lkidcc9r3psngdn60wk5zk6k32qxgklcrk23jhf88qnrfqbasw4"; depends=[doParallel foreach forecast gplots iterators MSwM png psych Rcpp RcppArmadillo tseries xts zoo]; }; + fDMA = derive2 { name="fDMA"; version="2.2.4"; sha256="0lpp6gyynfziyn5ar3wlq628b5lvw5dhxzw6wr5xwwfaarqf7qfx"; depends=[doParallel foreach forecast gplots iterators itertools MSwM png psych Rcpp RcppArmadillo tseries xts zoo]; }; fExoticOptions = derive2 { name="fExoticOptions"; version="3042.80"; sha256="1b3y7j5ywic6xhsj2afq6y5f5l0npgav854rb87938rjckz95d4h"; depends=[fBasics fOptions timeDate timeSeries]; }; fExpressCertificates = derive2 { name="fExpressCertificates"; version="1.2"; sha256="1r4qkhf7alasbwjz910b0x4dlzm72af06kv7v2vwyzvf3byn21c5"; depends=[fCertificates Matrix mvtnorm tmvtnorm]; }; fExtremes = derive2 { name="fExtremes"; version="3042.82"; sha256="1n0afql4csgsqf7j9x2v8yxncvpknms643l9knm0fqb4pdbaw58c"; depends=[fBasics fGarch timeDate timeSeries]; }; @@ -6330,7 +6612,7 @@ in with self; { fTrading = derive2 { name="fTrading"; version="3042.79"; sha256="0xnfg4npfdrvmp1n6vbsm7if16n5j83b7y1i2m5b34cqnlz9d69y"; depends=[fBasics timeDate timeSeries]; }; fUnitRoots = derive2 { name="fUnitRoots"; version="3042.79"; sha256="1hsv47dm0hx3s04g9h0bjdgi79zbfihnfxxdc2jskqp94yl7azsy"; depends=[fBasics timeDate timeSeries urca]; }; fabCI = derive2 { name="fabCI"; version="0.1"; sha256="123bc56nnx6hcj257imsd8sc6d0pggw08lf4m0lr90631gcm1mkn"; depends=[]; }; - fabricatr = derive2 { name="fabricatr"; version="0.4.0"; sha256="0z04n2n44anpci8m4m5hs83nwhiczil7lkg8glcgngrdh994k8hc"; depends=[rlang]; }; + fabricatr = derive2 { name="fabricatr"; version="0.6.0"; sha256="11vl2gabri7pb2ka7aqq3w7rxsi26qcdyqdhca9jpxm2m0swm2ms"; depends=[rlang]; }; face = derive2 { name="face"; version="0.1-4"; sha256="0kkgblxzhjzifxnym6g5psiwvfgydk1scqbxraldklm8c4a12zc3"; depends=[Matrix matrixcalc mgcv refund]; }; facebook_S4 = derive2 { name="facebook.S4"; version="1.1.0"; sha256="1if3fgyvj6pbf48yjwa5fkn3s4rl6kj9s1nk6dwphykhx72ghzrj"; depends=[httr magrittr plyr rjson]; }; facerec = derive2 { name="facerec"; version="0.1.0"; sha256="1dipcnxjz6yd34w0jrrvj5p0pwdgz1l5m9zvri7mflnz7g34gmaj"; depends=[dplyr httr jsonlite knitr magrittr rlang snakecase stringr]; }; @@ -6346,7 +6628,7 @@ in with self; { fail = derive2 { name="fail"; version="1.3"; sha256="0vfm6kmpmgsamda5p0sl771kbnsscan31l2chzssyw93kwmams7d"; depends=[BBmisc checkmate]; }; faisalconjoint = derive2 { name="faisalconjoint"; version="1.15"; sha256="08sb4za8qyadvigq2z7b0r44qk2lpahpnz9nv16xfjb1zhdkz5w3"; depends=[]; }; fakeR = derive2 { name="fakeR"; version="1.0"; sha256="0f4ngnd8s34j1327zp3aqnsiw0gfxkp1i24ng20hrmfl13s1qmxp"; depends=[mvtnorm polycor pscl VGAM]; }; - fakemake = derive2 { name="fakemake"; version="1.2.0"; sha256="1acd404fl0bc6xsal39vgx4j5jdqa24csn15cmw26yach7dxrm87"; depends=[callr igraph MakefileR withr]; }; + fakemake = derive2 { name="fakemake"; version="1.3.0"; sha256="1w2zrx5imkmcd9aikis2r54k2g9g6l0q7n3d18vjbk02js3f4jv4"; depends=[callr igraph MakefileR withr]; }; falcon = derive2 { name="falcon"; version="0.2"; sha256="09hlvwwj3k3nhcsxijjvv8x74a9m200ayjjplrp4baxvczwyq341"; depends=[]; }; falconx = derive2 { name="falconx"; version="0.2"; sha256="0648mvbc7ga7vr2xqzyln3dgd11h5s4bqhv3p55mj7smr4qv7hv9"; depends=[]; }; fam2r = derive2 { name="fam2r"; version="1.2"; sha256="0pq5cmzwk3s8cz5x8dsfb2d6qfpapkrwbzvkqmqkhcwhwryy40mm"; depends=[Familias paramlink]; }; @@ -6356,16 +6638,17 @@ in with self; { fancycut = derive2 { name="fancycut"; version="0.1.2"; sha256="1xg5qjxf77g10h07x6rvb8c3klc9gbr77bkw352qpas268pkswl2"; depends=[]; }; fanovaGraph = derive2 { name="fanovaGraph"; version="1.4.8"; sha256="1da7yskh2gn4arrrnalkl3izqyyrm0yf0il4v2izs7di7qlw3m6v"; depends=[DiceKriging igraph sensitivity]; }; fanplot = derive2 { name="fanplot"; version="3.4.1"; sha256="1xj1hdz3i9c9wdx7ryiqag69khh3544v4474ilxxiyahxg2r6m45"; depends=[]; }; - fansi = derive2 { name="fansi"; version="0.2.3"; sha256="1jcnzl8qdav5niv52xa1r8jp5c4wsnhsddjlnrc2ss76pzwgwvfv"; depends=[]; }; + fansi = derive2 { name="fansi"; version="0.4.0"; sha256="02f2rx7v7wz6w97m2slwky2i5y8f9iafycmkyr3siy3z3k8fj171"; depends=[]; }; faoutlier = derive2 { name="faoutlier"; version="0.7.2"; sha256="0h2azbkxpz03qjmq558mh7dkpv87vbvminvg69wqsx21m6hdl5r3"; depends=[lattice lavaan MASS mirt mvtnorm pbapply sem]; }; far = derive2 { name="far"; version="0.6-5"; sha256="18lj2mgnn9s59ypkr19zzv0sffwpx9mgk975xmpvw4kkl84dykis"; depends=[nlme]; }; faraway = derive2 { name="faraway"; version="1.0.7"; sha256="0lalf52y9rb4zdb4kpscwddb4zy0af7r5sm7lx8s9jaqykrwrfq6"; depends=[lme4 nlme]; }; farff = derive2 { name="farff"; version="1.0"; sha256="1w3mi0vsw7mpqznaf3rnzf7va7ax07n5rrpm2hnjh0q25lsv55hk"; depends=[BBmisc checkmate readr stringi]; }; + farver = derive2 { name="farver"; version="1.0"; sha256="18r98j9n2l6zjjx6gqvrjj6j19r52k0mrn72p4vyy97ag8fs8hb1"; depends=[Rcpp]; }; fasjem = derive2 { name="fasjem"; version="1.1.2"; sha256="1bbrcyyg96hakgla3604byrkn9034197vy2is048kdq20yr2y11n"; depends=[igraph]; }; fast = derive2 { name="fast"; version="0.64"; sha256="098rk6kszdx3szcwvwzcv7zlcd6qvqvbqch7q8ilas6vbki81ba4"; depends=[zoo]; }; fastAdaboost = derive2 { name="fastAdaboost"; version="1.0.0"; sha256="1pv1y6znvc37pgwk99v4r0hljhipq8v6r3r5cb5vhgyl0bfi8g38"; depends=[Rcpp rpart]; }; fastDummies = derive2 { name="fastDummies"; version="1.2.0"; sha256="0w7764b64isvlimly06i46hk1rspd3bjrqi2f2gafcwz5lk2jc3s"; depends=[data_table tibble]; }; - fastGHQuad = derive2 { name="fastGHQuad"; version="0.2"; sha256="0yv3wdyj7hs1gr3rq08k520v0ldmv5zzng709xjx2kchhwhmy8ah"; depends=[Rcpp]; }; + fastGHQuad = derive2 { name="fastGHQuad"; version="1.0"; sha256="1rjia8wggadr9xwxcmzmal0rc4g6pa3dr5888fbbnb6abl8b2lrj"; depends=[Rcpp]; }; fastGraph = derive2 { name="fastGraph"; version="1.1"; sha256="1vbi5yssnh8hcbmrq1r437vpvj8hqd3vc8wmcy0nbyvnmyjaxkvb"; depends=[]; }; fastHICA = derive2 { name="fastHICA"; version="1.0.2"; sha256="1h794ybbii0k7v3x0r1499zxdqa1i1dpi3i7idzqdrffnb5kmwlv"; depends=[energy fastICA]; }; fastICA = derive2 { name="fastICA"; version="1.2-1"; sha256="108z2ymby5y4h8l4l2krqwm28rya93gq09yylgilnm3afvfrfabg"; depends=[]; }; @@ -6373,7 +6656,7 @@ in with self; { fastLink = derive2 { name="fastLink"; version="0.4.0"; sha256="0cqrg6fj7ylxf5brwmdsv7wrak8b395yszdy1cz3q87r3ayi02cq"; depends=[adagio data_table doParallel dplyr FactoClass foreach gtools Matrix plotrix Rcpp RcppArmadillo RcppEigen stringdist stringi stringr]; }; fastM = derive2 { name="fastM"; version="0.0-4"; sha256="1n9a431w0hl4kr3pa32kcyd1d73acz4vb9vhfkckk3099mg46d9m"; depends=[Rcpp RcppArmadillo]; }; fastR = derive2 { name="fastR"; version="0.10.3"; sha256="1sz6krxiamq3rp4h9ah2b1zvyyrlvsn7lpvrjv1xda2c1kqqkvmk"; depends=[lattice mosaic mosaicCalc mosaicData]; }; - fastR2 = derive2 { name="fastR2"; version="1.1.0"; sha256="145gkz777zx80bxx1zwwj4diswl6yf2v02wgfpy3rvk2q225f1id"; depends=[dplyr ggplot2 lattice maxLik miscTools mosaic numDeriv]; }; + fastR2 = derive2 { name="fastR2"; version="1.2.1"; sha256="15mqsdy79zvd4srrszdjp0kh9lfcq3yxp7j5d4xcqbjbwsgy68il"; depends=[dplyr ggplot2 lattice maxLik miscTools mosaic numDeriv]; }; fastSOM = derive2 { name="fastSOM"; version="1.0.0"; sha256="1x4kxys7mxlxz7cfbjig44za8m8p19xgzcs5y2wn9320sx8b0wc0"; depends=[]; }; fastTextR = derive2 { name="fastTextR"; version="1.0"; sha256="0l0f9jvsa68a3vd6mwbhsqd12729nd6nwsnlzrhsg9wj9rx8kpmi"; depends=[Rcpp]; }; fasta = derive2 { name="fasta"; version="0.1.0"; sha256="0wnppxn3039dj58xm0b66fsyq537bk8k8m56im11xj1iwc3zc6vw"; depends=[]; }; @@ -6382,11 +6665,12 @@ in with self; { fastcmh = derive2 { name="fastcmh"; version="0.2.7"; sha256="0hib3r3pkfdi67bdy4pf1pw6869vq4b3pg1pq1zwpyy76nbnq9vl"; depends=[bindata Rcpp]; }; fastcox = derive2 { name="fastcox"; version="1.1.3"; sha256="0jn19v6mkwgyz8x63xrfgkgnf0f2rq338r5qkhz690mdzr4c47a3"; depends=[Matrix]; }; fastdigest = derive2 { name="fastdigest"; version="0.6-3"; sha256="02csl261v7nassi5119ygw6jglm8q6rssg7lgyxzj73mkyilm832"; depends=[]; }; + fasterElasticNet = derive2 { name="fasterElasticNet"; version="1.1.2"; sha256="1hr0wc6s6zpq1hkfgshf0dqjxb7s2849bb8lb04nmi6p42r3628g"; depends=[Rcpp RcppArmadillo]; }; fasteraster = derive2 { name="fasteraster"; version="1.1.1"; sha256="1ycr2h046jds2758xvxn00rhglx3zarbzn3r38j66j5pnz2iiq4f"; depends=[Rcpp]; }; fasterize = derive2 { name="fasterize"; version="1.0.0"; sha256="0q8n1r5n06yr6vmnwrdajx8923646bzm7ywgn2f0zxl214plf56s"; depends=[raster Rcpp RcppArmadillo sp]; }; fastmaRching = derive2 { name="fastmaRching"; version="1.1.0"; sha256="085xr5i6h6vwl1flzbkwqsm8d815s0p02p0mir60jqjvy0s7haip"; depends=[raster rgdal sp]; }; fastmatch = derive2 { name="fastmatch"; version="1.1-0"; sha256="0z80jxkygmzn11sq0c2iz357s9bpki548lg926g85gldhfj1md90"; depends=[]; }; - fastnet = derive2 { name="fastnet"; version="0.1.5"; sha256="0l14ahrk4p5ils5rqwkj25f7xxhjqxpibgcy942c6pyc33rbsbcl"; depends=[doParallel foreach igraph tidygraph]; }; + fastnet = derive2 { name="fastnet"; version="0.1.6"; sha256="16jdwvk1xhl6bn9fx5s8pzvbizx6c0jmg6arqf201a7ghw2wi4xh"; depends=[doParallel foreach igraph tidygraph]; }; fastpseudo = derive2 { name="fastpseudo"; version="0.1"; sha256="0paag4pjh3gs270j663bsl65sfrq43gk2zzqmalr03fmcckp6aaj"; depends=[]; }; fastqcr = derive2 { name="fastqcr"; version="0.1.0"; sha256="0hzlp66as7k0bh3biqkngacpkq1hi3y3gp6wg4c5476ywzm83gra"; depends=[dplyr ggplot2 gridExtra magrittr readr rmarkdown rvest scales tibble tidyr xml2]; }; fastrtext = derive2 { name="fastrtext"; version="0.2.5"; sha256="0zbd2sxzarxic90d2pkbn7fak5gyb81b180m91f784smb3sx1p1j"; depends=[assertthat Rcpp]; }; @@ -6399,13 +6683,14 @@ in with self; { fbar = derive2 { name="fbar"; version="0.4.3"; sha256="1raq8ak01gcnmcsaa3fdfqi40d67v7nfjr212jzvq7wp2qk3j10i"; depends=[assertthat dplyr magrittr Matrix purrr rlang ROI ROI_plugin_ecos stringr tibble tidyr]; }; fbati = derive2 { name="fbati"; version="1.0-3"; sha256="03a48sndphxrm4bmk0qx0lxnk4akkdpbvldq9dcnf9hxxmrfivh4"; depends=[fgui pbatR rootSolve]; }; fbroc = derive2 { name="fbroc"; version="0.4.0"; sha256="0bxi027iqqn50mn5nrlgx3z4qdlfkrq88s0dqyaxdl8rsrwp3d2w"; depends=[ggplot2 Rcpp]; }; + fc = derive2 { name="fc"; version="0.1.0"; sha256="0x41xfchy499kz0qi7fp12vpkbcddprv19mmk48lxzavv4f5avfh"; depends=[codetools]; }; fcd = derive2 { name="fcd"; version="0.1"; sha256="091wbf5iskcgyr7jv58wrf590qijb0qcpninmvm3xrwxi34r37xr"; depends=[combinat glmnet MASS]; }; - fclust = derive2 { name="fclust"; version="1.1.3"; sha256="1wpdvpfama90x8rj5yv54q7k318ad4y6pi33vsyh0rsb3fdrkqkr"; depends=[]; }; + fclust = derive2 { name="fclust"; version="2.0.2"; sha256="032iqrnsbs2ckhlxw9gnsqxpxj38hqnrlq46k11rvyf5zlpnci99"; depends=[MASS Rcpp RcppArmadillo]; }; fcm = derive2 { name="fcm"; version="0.1.3"; sha256="1mqk6szczsixdvw0inkypij4cw2syng5l5ccw0xk55kc21l1lzn0"; depends=[ggplot2 reshape2]; }; fcr = derive2 { name="fcr"; version="1.0"; sha256="17jrz5zp1msd2khl1lwnb5sgxcigagni556rhn7qm9g0aykbh8yj"; depends=[face fields mgcv]; }; fcros = derive2 { name="fcros"; version="1.5.6"; sha256="0n1zbzl6g9k3smdpgyb3xsa2w8ir4bdagv7w644x1jck5rd0xn2j"; depends=[]; }; fcuk = derive2 { name="fcuk"; version="0.1.21"; sha256="1sb7p1m5qb88028mrw95lhh8l7dxj696hjh88nfsdpnscryknfpv"; depends=[magrittr purrr stringdist tibble]; }; - fdANOVA = derive2 { name="fdANOVA"; version="0.1.1"; sha256="16i0mnbxyjbw06havl277c6vi7mq5rak9cjzp8c2zvr8cakalkg4"; depends=[doBy doParallel fda foreach ggplot2 magic MASS]; }; + fdANOVA = derive2 { name="fdANOVA"; version="0.1.2"; sha256="1pycq5a4czqzi8wcfmlc9ncg827j7n0qxyj90wcv39nbcrnl3da1"; depends=[doBy doParallel fda foreach ggplot2 magic MASS]; }; fda = derive2 { name="fda"; version="2.4.8"; sha256="0n39rzbhg1hipzn51rzmbchn2358qgapg08iv7lmiqj5y7i9qns2"; depends=[Matrix]; }; fda_usc = derive2 { name="fda.usc"; version="1.4.0"; sha256="0gp19c5lxp0g4690vdr0gpw89rl9v3l6872mf7hr8nsyyd6776vn"; depends=[fda MASS mgcv nlme rpart]; }; fdaMixed = derive2 { name="fdaMixed"; version="0.5"; sha256="1k2b3z2jj37j6njvxalg8640zlcvi1cm7wkcwp0pia21wydz75ip"; depends=[Formula Rcpp RcppArmadillo]; }; @@ -6416,7 +6701,6 @@ in with self; { fdasrvf = derive2 { name="fdasrvf"; version="1.8.3"; sha256="1lqyadg17ddd3vksbaxc7bpwvk0afsd59rfg0n5wrgvhbd473s0y"; depends=[coda doParallel fields foreach matrixcalc mvtnorm Rcpp RcppArmadillo testthat viridisLite]; }; fdatest = derive2 { name="fdatest"; version="2.1"; sha256="0zdnmssir5jz2kbfz4f4xshjfv4pivqx7cbh2arlx6ypkjrjws8n"; depends=[fda]; }; fdcov = derive2 { name="fdcov"; version="1.1.0"; sha256="0savsgcifcjjqrmbpn6m30gncq5iigqxpb19l710wlx8nm98svjh"; depends=[corrplot matlab]; }; - fdq = derive2 { name="fdq"; version="0.2"; sha256="1iyplxm6niywfhmdnliy9nvvax1w6sijar8gpsj853cdfvn6kz5m"; depends=[data_table Fgmutils ggplot2 plyr randomcoloR sqldf]; }; fdrDiscreteNull = derive2 { name="fdrDiscreteNull"; version="1.3"; sha256="17nzqy4i1c5kcqyps52827q5apyjn4znb1ql4qvfm8v2m1fvily3"; depends=[MCMCpack qvalue]; }; fdrci = derive2 { name="fdrci"; version="2.1"; sha256="1sgrsmlz7sbr1maw3qnpzqz3z75fh5nyiibpsq8j0y12xac8d0x3"; depends=[]; }; fdrtool = derive2 { name="fdrtool"; version="1.2.15"; sha256="1h46frlk7d9f4qx0bg6p55nrm9wwwz2sv6d1nz7061wdfsm69yb5"; depends=[]; }; @@ -6431,14 +6715,15 @@ in with self; { fecR = derive2 { name="fecR"; version="0.0.2"; sha256="1p4166cxajapm158aqbz9p7m8c8dqga1infl6y6wazjnayaib3cb"; depends=[lubridate plyr]; }; fechner = derive2 { name="fechner"; version="1.0-3"; sha256="0bassigcipwlr2g8cdjh8jyhmb903k3hla9gnigcbz7qwzlfwa86"; depends=[]; }; federalregister = derive2 { name="federalregister"; version="0.2.0"; sha256="0qr8nd3ylnwcv1wxspw5i7ray5sh30zr648spg0lpqq8dp2b8p7b"; depends=[curl httr jsonlite]; }; + fedregs = derive2 { name="fedregs"; version="0.1.0"; sha256="1ydkw1090n8kw26d89wrzs86xq47mahdj41pgf8x1m292xcffvjm"; depends=[dplyr httr magrittr purrr rvest stringi tidytext xml2]; }; fedreporter = derive2 { name="fedreporter"; version="0.2.1"; sha256="18hs358iyxmbh28jy9f65zvanpr6bk4gq75qbj255y1zzdsjr9x1"; depends=[httr jsonlite]; }; feedeR = derive2 { name="feedeR"; version="0.0.7"; sha256="08mnfi96qkr1fj53ywqmya957swcwrfd3hqk0qaf2ni96sxxnp98"; depends=[digest dplyr lubridate RCurl XML]; }; fence = derive2 { name="fence"; version="1.0"; sha256="18l3fliww60d9n9hbfdny5vr9mi78krwpjj5sypdsb77d6332h9q"; depends=[fields ggplot2 lme4 MASS sae snow snowfall]; }; - fergm = derive2 { name="fergm"; version="0.2.1"; sha256="14asdvr98nh6rayqff9xda54w95bjg4g2f72a21rhyc932d7589g"; depends=[ergm extrafont ggplot2 matrixStats network reshape2 rstan statnet stringr]; }; + fergm = derive2 { name="fergm"; version="1.1.4"; sha256="1d979z2m5f13i1w9d8kh9rnaafavsap169w0nycpd5j2f3dfhyn7"; depends=[ergm extrafont ggplot2 matrixStats network reshape2 rstan]; }; fermicatsR = derive2 { name="fermicatsR"; version="1.4"; sha256="1587f67fypj22rdi1319zq765lcc9z518bzl1jr4lz6c8lrzfm9i"; depends=[]; }; fetchR = derive2 { name="fetchR"; version="2.1-1"; sha256="0i5k40i7ryfbk1l4nn0k5hnmzhhp6970ns1j82hnih7kmdl4rlwj"; depends=[plotKML rgdal rgeos sp]; }; ff = derive2 { name="ff"; version="2.2-14"; sha256="1w724q4jpzbvzpilb2ifviaxkjgk9lzwxz9gksnvicbmfa20fqqw"; depends=[bit]; }; - ffbase = derive2 { name="ffbase"; version="0.12.3"; sha256="1nz97bndxxkzp8rq6va8ff5ky9vkaib1jybm6j852awwb3n9had5"; depends=[bit fastmatch ff]; }; + ffbase = derive2 { name="ffbase"; version="0.12.5"; sha256="1h5x6rbb1nrpzf4ywkizn8ij0bz3mlz46byh46ylxhicg1ribi24"; depends=[bit fastmatch ff]; }; ffmanova = derive2 { name="ffmanova"; version="0.2-2"; sha256="0sw8br73mx552m4b5zi4qgjcrwxflmgsnvs4mlnxh8g2gaf5bx4j"; depends=[]; }; ffstream = derive2 { name="ffstream"; version="0.1.6"; sha256="036ikhah4y85khgfmvxwsn3vavvw1is8i9k2lw474wxlh4cxa3kd"; depends=[Rcpp]; }; fftw = derive2 { name="fftw"; version="1.0-4"; sha256="0172kpxzjx8239r2jbcqqbpcpqygrxk36a2kmh00f73mrq0kjhc0"; depends=[]; }; @@ -6447,28 +6732,30 @@ in with self; { fgof = derive2 { name="fgof"; version="0.2-1"; sha256="0bclkb3as0fl2gyggqxczndfyj9pfnni5pa3inpn5msrnjg4g2j2"; depends=[mvtnorm numDeriv]; }; fgpt = derive2 { name="fgpt"; version="2.3"; sha256="1d0qzsn4b68jhk07k97iv765jpmzzh1gwqpid0r76vg4cwqfs3n7"; depends=[]; }; fgui = derive2 { name="fgui"; version="1.0-8"; sha256="024fzd1c7iwqprn26hwjb9l2qlvvyzl449d7iixy0x69djwsrysv"; depends=[]; }; + fieldRS = derive2 { name="fieldRS"; version="0.1.1"; sha256="1zyi1qnyn9wi2rcf1d512dyrlkws2adp2wamzbrcbcgv8l4kysz7"; depends=[caret ggplot2 raster rgeos sp spatialEco]; }; fields = derive2 { name="fields"; version="9.6"; sha256="1v7z48a8jmdcil28rj8c3455k6rssr5v9qi6dyhhpbb193bj8121"; depends=[maps spam]; }; - fiery = derive2 { name="fiery"; version="1.1.0"; sha256="0251vfr7b8r4xjgcf8gyh1ddj0lj73fl0pim0k3vpzva5wmwigs1"; depends=[assertthat crayon desc future glue httpuv later R6 reqres stringi uuid]; }; - fiftystater = derive2 { name="fiftystater"; version="1.0.1"; sha256="1nri9vsqif03xrmm3g5llasqm49hj169mgv046f2l0mh9vp0fqpc"; depends=[]; }; + fiery = derive2 { name="fiery"; version="1.1.1"; sha256="07cfrzajr5knmz5ngczkdd2kzjfdnn1y4b0z73daxwhk4dq8j6ji"; depends=[assertthat crayon future glue httpuv later R6 reqres stringi uuid]; }; filehash = derive2 { name="filehash"; version="2.4-1"; sha256="1x7an7rsy5pz2qr86m511rsv297vacxwk3y1a71754yq739qgq6h"; depends=[]; }; filehashSQLite = derive2 { name="filehashSQLite"; version="0.2-4"; sha256="1higvkmj4wvnwpvayqinzaygiksij20d77dx118q0gffsczadamh"; depends=[DBI filehash RSQLite]; }; - filelock = derive2 { name="filelock"; version="1.0.1"; sha256="11mmq296zg62gnxjk7dyr866kihihmsjpfg6bcc7hv6ivh4812nn"; depends=[]; }; + filelock = derive2 { name="filelock"; version="1.0.2"; sha256="00ql5fw1hidpfnm0szaavf43ahmsnvdbi8i5lr1nrcc90yaiaadc"; depends=[]; }; filematrix = derive2 { name="filematrix"; version="1.3"; sha256="1v3aj1ng742msb0sfdnjsbqb508mqjf8jlq2v33vxldhradw5w0b"; depends=[]; }; filenamer = derive2 { name="filenamer"; version="0.2.3"; sha256="19gavhh5q7dziv0yc000w06qp58wk2cm52cxjl33p1q4cjk6gg3m"; depends=[]; }; fileplyr = derive2 { name="fileplyr"; version="0.2.0"; sha256="15rxls0njd6j2vxdahf4fx2nxmsa3rc41812v3wlaqas99naaxxr"; depends=[assertthat datadr tibble]; }; files = derive2 { name="files"; version="0.0.1"; sha256="1vhhawqjjbb6fadkn3l10mvz63w3vmcwvl93fk0q9mhkifzlj9kc"; depends=[]; }; - filesstrings = derive2 { name="filesstrings"; version="2.5.0"; sha256="04axsnk1912h1i6b2qp9cxxs5jd1vkwgxzg2kjw43gnm36a7188w"; depends=[checkmate magrittr matrixStats ore purrr Rcpp rlang stringr tibble]; }; - filling = derive2 { name="filling"; version="0.1.0"; sha256="0avlfl06nd8wn76ydii09ng2fqp92d4n9v2y5vg16m3my58l0srd"; depends=[CVXR nabor Rcpp RcppArmadillo Rdpack ROptSpace RSpectra]; }; - finalfit = derive2 { name="finalfit"; version="0.7.8"; sha256="1jkmagr512h5vvlqyszi6zihpzbmam571bgks5js0d3wbhjs9j38"; depends=[ggplot2 gridExtra Hmisc lme4 magrittr mice plyr pROC scales stringr survival survminer]; }; + filesstrings = derive2 { name="filesstrings"; version="2.7.0"; sha256="02v565in9sw1j01wyqmi3y42l1rgqqrkmfis808nh2lsgf6l1a0f"; depends=[checkmate magrittr matrixStats ore purrr Rcpp rlang strex stringr tibble]; }; + filling = derive2 { name="filling"; version="0.2.0"; sha256="0yxixwgvn7jq09j4r3q33mmdda9a4anfi7y0xqscbdjz6p9bx48w"; depends=[CVXR nabor Rcpp RcppArmadillo Rdpack ROptSpace RSpectra]; }; + finalfit = derive2 { name="finalfit"; version="0.8.7"; sha256="1xs5q8hfvs84qjkgrbsi6xxlj1bycrnrryqfbr7306l42lp1k7mf"; depends=[boot broom dplyr forcats GGally ggplot2 gridExtra Hmisc lme4 mice plyr pROC purrr scales stringr survival survminer tidyr]; }; finch = derive2 { name="finch"; version="0.2.0"; sha256="1vganbkz2d96xfz2jf1q0kqarc575w3nswss2igynsbbd0y53mjm"; depends=[data_table digest EML hoardr plyr rappdirs xml2]; }; findR = derive2 { name="findR"; version="0.2.1"; sha256="1a7cf6kd7i2l4ffr2b17nb9xnpsjhf6fcwpjy06r0qgcapnfp54b"; depends=[pdftools stringr]; }; findpython = derive2 { name="findpython"; version="1.0.3"; sha256="1y08jk2ffmkf9zpwiz2xymjhfwqvls9vzsnq62v278ghw9d571jl"; depends=[]; }; findviews = derive2 { name="findviews"; version="0.1.3"; sha256="1l1yhw5hvrn0rpkdsch8m69d2q5284jwccvv7r4ia4m0iqjfipj7"; depends=[ggplot2 gridExtra scales shiny]; }; - fingerPro = derive2 { name="fingerPro"; version="1.0"; sha256="17r23x8cdllr8slk56dsmrwc4ns69b3cqy59mxxbsjnhjl3di6x8"; depends=[car GGally ggplot2 gridExtra klaR MASS plyr Rcmdr Rcpp RcppGSL reshape rgl scales]; }; + fingerPro = derive2 { name="fingerPro"; version="1.1"; sha256="1a1lj8gyrbgcg8hr03cj2bjzlaafddspri7abc83ys1raqwd4j68"; depends=[car GGally ggplot2 gridExtra klaR MASS plyr Rcmdr Rcpp RcppGSL RcppProgress reshape rgl scales]; }; fingerprint = derive2 { name="fingerprint"; version="3.5.7"; sha256="04jcwkydjrs31pia6kq8z2n9s54im950q08hs2ay15xjxxkmb8ic"; depends=[]; }; - fingertipsR = derive2 { name="fingertipsR"; version="0.1.8"; sha256="168z59y2mqz53qhzavzynh6y11d453dd6j5928ahg6x24hjz6d4w"; depends=[curl dplyr DT httr jsonlite miniUI purrr readr shiny shinycssloaders]; }; + fingertipsR = derive2 { name="fingertipsR"; version="0.1.9"; sha256="1sg2rsk41nxvwy7brikh685gqg5i5d9x2jralgap69qcpmy30gpv"; depends=[curl dplyr DT httr jsonlite miniUI purrr readr shiny shinycssloaders]; }; + fingertipscharts = derive2 { name="fingertipscharts"; version="0.0.2"; sha256="12izvrmjdwy212zxgl54cbry53fv351g3vxmjw5vimqmdd991fxw"; depends=[dplyr fingertipsR geojsonio ggplot2 leaflet lemon mapproj purrr rlang scales sf stringr tibble tidyr]; }; finiteruinprob = derive2 { name="finiteruinprob"; version="0.6"; sha256="0z4l0crymh58chxniqq70fqmvi6f5jkgvz72vbc7s3l9lrrapgr3"; depends=[numDeriv sdprisk]; }; finreportr = derive2 { name="finreportr"; version="1.0.1"; sha256="1mansiyl4p4zqc1h2aw9zgzb3fy4mppgmshdm8mcf4nbm340g4vk"; depends=[curl dplyr httr rvest XBRL xml2]; }; + firebehavioR = derive2 { name="firebehavioR"; version="0.1.1"; sha256="1hf7j9nqqa2i92y73c1yniw6lgmjrl8fag9r4xnkd8vpiw453ck4"; depends=[ggplot2]; }; fishMod = derive2 { name="fishMod"; version="0.29"; sha256="0pbs4z27vwa3c42xdw3mr6l2i581bgvn2pk52kawbcnnlsff92ar"; depends=[]; }; fishdata = derive2 { name="fishdata"; version="0.1.3"; sha256="04162m1j570cdwhffkwjs1x1qlsc20djj1jwx2hl2cqmbp584ppq"; depends=[]; }; fisheyeR = derive2 { name="fisheyeR"; version="0.9"; sha256="1w6va7gakqq2q8hsvdszpn8s2ysdfc648bk5p5v3wbl5s403bci8"; depends=[tkrplot]; }; @@ -6478,18 +6765,18 @@ in with self; { fit_models = derive2 { name="fit.models"; version="0.5-14"; sha256="0vjbzmx0ambm6yzidb4vbgmhclwzwv2iz2cwl54ccdkvx4cx3fck"; depends=[lattice]; }; fit4NM = derive2 { name="fit4NM"; version="3.3.3"; sha256="0k2194521yby6xxi77bpjp6ywz8kpnzws217m7n0hw6xwz5mqj1g"; depends=[cairoDevice gWidgets gWidgetsRGtk2 RGtk2 tkrplot]; }; fitDRC = derive2 { name="fitDRC"; version="1.1.1"; sha256="09z9l27iwl0fd3zy6rsdhmy8qbm5d9a4wcaj5rxp7ynlnpi102aa"; depends=[]; }; - fitODBOD = derive2 { name="fitODBOD"; version="1.1.0"; sha256="15ylldlq12mrw06pzww54hsl8nb9krs5w1cgh037km9sndsswvji"; depends=[hypergeo]; }; + fitODBOD = derive2 { name="fitODBOD"; version="1.2.0"; sha256="00wdpvccb1xf69ry5x9aqwiid4srpibpl640fbn1xxy3gcr5vpwn"; depends=[hypergeo]; }; fitPoly = derive2 { name="fitPoly"; version="3.0.0"; sha256="0ws1vsh8if9i9i7820ak32b0bysjc0z09nbrk17qpms0b11cpc3g"; depends=[foreach]; }; fitTetra = derive2 { name="fitTetra"; version="1.0"; sha256="0ia6wk4gicpmn6kclsd28p7v1npwfv2blagiz0cxzwfw3njv103g"; depends=[]; }; fitbitScraper = derive2 { name="fitbitScraper"; version="0.1.8"; sha256="0b4d7xw6inp6l1dkfwyrzxwg4vspp4vzlwrhv14ajxrqz6irj8a0"; depends=[httr jsonlite stringr]; }; fitdc = derive2 { name="fitdc"; version="0.0.1"; sha256="1b1abib7jkl7a6r686r53qjw2ywb9q2h67is8691kkaqxpawg30p"; depends=[]; }; - fitdistrplus = derive2 { name="fitdistrplus"; version="1.0-9"; sha256="18x9454g598d54763k3hvi33iszifk7sxvhd1zg5r8z1vpixx3z6"; depends=[MASS survival]; }; + fitdistrplus = derive2 { name="fitdistrplus"; version="1.0-11"; sha256="12hckg3y5j3zh9q1gwxkc27q813p2r42iqp7wdfiq6nj55jrh6w6"; depends=[MASS npsurv survival]; }; fitplc = derive2 { name="fitplc"; version="1.1-7"; sha256="1dffgqsml6cj6ayqdpr0330kj8v57jwi3pgchb8v98rainygsyfw"; depends=[car nlme]; }; fitteR = derive2 { name="fitteR"; version="0.1.0"; sha256="1kgnyl7am966vkfap8gmvchlpankrcj5dv5aj7ws8ix9shr76db6"; depends=[dplyr DT maxLik R_utils shiny]; }; - fitur = derive2 { name="fitur"; version="0.5.25"; sha256="0f33c4mg0257s9c0qldryihaq8p3y07j2nwghjpqhi3rv4mrg2xf"; depends=[actuar e1071 fitdistrplus ggplot2]; }; + fitur = derive2 { name="fitur"; version="0.6.1"; sha256="04lr717lsbb4731nlzgscraj30knik4q68jzrl4i5f27912159r9"; depends=[actuar DT e1071 fitdistrplus ggplot2 goftest miniUI rstudioapi shiny]; }; fivethirtyeight = derive2 { name="fivethirtyeight"; version="0.4.0"; sha256="1sdj5b365hi11dd2yxvg9w3fz3rx9rbv1nnhf5i8v2ydg4kqyrws"; depends=[]; }; fixedTimeEvents = derive2 { name="fixedTimeEvents"; version="1.0"; sha256="0z7ji8yzp4pj76ad64l7ivknkbi82ijx6abd3a18wicqhrh433sj"; depends=[]; }; - fixerapi = derive2 { name="fixerapi"; version="0.1.5"; sha256="0mp492n75wh8ws85gh5q9bbq709a78z14pipc8vjxk0fizhxwwdc"; depends=[jsonlite tibble tidyr]; }; + fixerapi = derive2 { name="fixerapi"; version="0.1.6"; sha256="0ikf8dn0l9c9gshp4bph3wasl0bh6lfybinc8n1rvb202231hmgb"; depends=[jsonlite tibble tidyr]; }; fizzbuzzR = derive2 { name="fizzbuzzR"; version="0.1.1"; sha256="119gbi9y4n8r52hk9vj7zf795dv9xnk7lnngljjcd7ydnhygwd4h"; depends=[]; }; flacco = derive2 { name="flacco"; version="1.7"; sha256="1w77smmbrwglayr2rj88b00x7wan9f3x1fq8h6xyhybfvrw7vr0r"; depends=[BBmisc checkmate mlr]; }; flam = derive2 { name="flam"; version="3.2"; sha256="0v6kcl4n7wq052p7jdgbzlh9fpk8bzlrqw12i6pib1wd3slj0asa"; depends=[MASS Rcpp]; }; @@ -6498,22 +6785,22 @@ in with self; { flars = derive2 { name="flars"; version="1.0"; sha256="06qma1ar1nj7n6g9alk1qydm5bkj6lsjx0pqkikxpb41d91civqk"; depends=[fda MASS Matrix Rcpp RcppEigen]; }; flashClust = derive2 { name="flashClust"; version="1.01-2"; sha256="0l4lpz451ll7f7lfxmb7ds24ppzhfg1c3ypvydglcc35p2dq99s8"; depends=[]; }; flatr = derive2 { name="flatr"; version="0.1.1"; sha256="10l98a3f57wahfpdqxj70r25zfhk4vzzd014pdnriy458yrfd7rw"; depends=[dplyr magrittr tibble]; }; - flatxml = derive2 { name="flatxml"; version="0.0.1"; sha256="0rg6khx6sgxhmvh3j8m1ady8bya2904n3maynb7393rp9s8jvb9p"; depends=[RCurl xml2]; }; - flexCWM = derive2 { name="flexCWM"; version="1.8"; sha256="0x6rmag3gdlph1xd1xbnfxxzl4rmp4z7zsvagbcwbri21ia29s14"; depends=[ContaminatedMixt mclust numDeriv statmod]; }; + flatxml = derive2 { name="flatxml"; version="0.0.2"; sha256="1f7pc3chzimkg23490qvppy63sk4ds3aaahc36sa4dc4qmhabyms"; depends=[RCurl xml2]; }; + flexCWM = derive2 { name="flexCWM"; version="1.9"; sha256="02afmg7d008mfgja7pqxk0fdgmgqk9vq7xy13ijancg6fm3x8prk"; depends=[ContaminatedMixt mclust numDeriv statmod]; }; flexPM = derive2 { name="flexPM"; version="2.0"; sha256="0h3qs9w9pc2nc24q1diz7j3s93y40ijpmgq2l0xg9mzcgjz9kz8c"; depends=[survival]; }; - flexclust = derive2 { name="flexclust"; version="1.3-5"; sha256="19ihdhmhaglccqpvrpc51367gkfafg4jdpabbk0j6mh2n16hi511"; depends=[lattice modeltools]; }; + flexclust = derive2 { name="flexclust"; version="1.4-0"; sha256="0x7wxk8y46ndyz6fdacym0rd6p9wh3pcfr28chjcg5d7fm849zl2"; depends=[class lattice modeltools]; }; flexdashboard = derive2 { name="flexdashboard"; version="0.5.1.1"; sha256="0fy3nbrr67zqgd44r2mc850s5sp0hzfcw3zqs15m8kxzj1aw067x"; depends=[htmltools htmlwidgets jsonlite knitr rmarkdown shiny]; }; flexmet = derive2 { name="flexmet"; version="1.0.0.0"; sha256="0xhr4i46s3k7a4yz2sd1sphn8wz27xcl580s2kqkr1ifg8941kv8"; depends=[]; }; flexmix = derive2 { name="flexmix"; version="2.3-14"; sha256="0sl4zxh1sb2sr5q7svjw9ihrm219jzn82yrc9d43q6r1b8bpyz43"; depends=[lattice modeltools nnet]; }; flexrsurv = derive2 { name="flexrsurv"; version="1.4.1"; sha256="13jq7yk7rz2148wkf7dv28l79zwdf1gpfkd5khgacb8hl5kml3p0"; depends=[Epi formula_tools matrixcalc orthogonalsplinebasis survival]; }; flexsurv = derive2 { name="flexsurv"; version="1.1"; sha256="1vj8zsfgq2rv6v7na4w7n7z3farc69qsavm7pnmnhkaylz61gq26"; depends=[deSolve mstate muhaz mvtnorm quadprog Rcpp survival]; }; flexsurvcure = derive2 { name="flexsurvcure"; version="0.0.2"; sha256="1lhw2z8i4l822ncziwpw6hg0dzc244q60n7l5aahgdhcr0xgylhz"; depends=[flexsurv gtools survival]; }; - flextable = derive2 { name="flextable"; version="0.4.4"; sha256="12f33szyxf4b7ipz4j9sli6miwkjq2309rpinaxmnsqsafd1zn3b"; depends=[gdtools htmltools knitr officer R6 rmarkdown stringr]; }; - flifo = derive2 { name="flifo"; version="0.1.4"; sha256="1yilfnblarimc8mlvvwsgib5sxcfgvgsvgpyzddxb39g6fb7lffs"; depends=[bazar pryr]; }; - flip = derive2 { name="flip"; version="2.4.3"; sha256="04zf2gnk5w57gxnlnh26pn1ir1wfrzxhfhchr33ghk7prhc7k4b8"; depends=[cherry e1071 Rcpp RcppArmadillo someMTP]; }; + flextable = derive2 { name="flextable"; version="0.4.5"; sha256="09j2y0z7rkc0w1cl9pp1cpk6fnzzfr6245mxa3ca42z9k2cy2jfl"; depends=[gdtools htmltools knitr officer R6 rmarkdown stringr xml2]; }; + flifo = derive2 { name="flifo"; version="0.1.5"; sha256="03x66l3ryrjvwbxxd0ncjrb5w9kc7fswmp5psb1cb7r87f395gm3"; depends=[bazar pryr]; }; + flip = derive2 { name="flip"; version="2.5.0"; sha256="08x5hwxaxbgc745gblja7gcy0b5wbp7jf90lkha75zl5cc9iyksl"; depends=[cherry e1071 plyr someMTP]; }; flippant = derive2 { name="flippant"; version="1.1.0"; sha256="06aj90y7c33c1q0nw1c67vr1pfmp9fw78az6ivrbq110f2k1m12w"; depends=[assertive_files assertive_numbers assertive_properties assertive_strings assertive_types data_table ggplot2 magrittr minpack_lm plyr RcppRoll stringi withr wmtsa]; }; - flipscores = derive2 { name="flipscores"; version="0.1"; sha256="0jb9im2p3x20y356av749mni3cka2byhv7glz7qhdmsdryrdizh7"; depends=[]; }; - float = derive2 { name="float"; version="0.1-1"; sha256="0bzwc48l4wijrxz3swrp720q9jsa74qwv6s8zpigbnjkspsqy3vi"; depends=[]; }; + flipscores = derive2 { name="flipscores"; version="0.2"; sha256="0b55qxdrn6m0pbk4aj9zr1d9s7id6pclsaz939p48jmqx07zayjg"; depends=[]; }; + float = derive2 { name="float"; version="0.2-0"; sha256="14kkd724knd7v1wdl6qy88izk94qa1rb9cfd8myqa3va582fc5zj"; depends=[]; }; flock = derive2 { name="flock"; version="0.7"; sha256="1zg93p74icj4bhxnmnssj2xp6vw4yaksyavq03497v33xfpdxss7"; depends=[Rcpp]; }; flood = derive2 { name="flood"; version="0.1.1"; sha256="0nlmjh2l7dij1aqd70hhj0m550knlin3am14azqkx4pacs1kir3p"; depends=[copula evd magrittr TLMoments]; }; flora = derive2 { name="flora"; version="0.3.0"; sha256="1nsc2q6y02shpk70p44rr7nl7pnj6as7jgdyakxqs64imwais8x2"; depends=[dplyr httr jsonlite stringdist]; }; @@ -6525,7 +6812,7 @@ in with self; { flsa = derive2 { name="flsa"; version="1.05"; sha256="07z2b1pnpnimgbzkjgjl2b074pl9mml7nac2p8qvdgv7aj070cmh"; depends=[]; }; fluoSurv = derive2 { name="fluoSurv"; version="1.0.0"; sha256="1dv4lf7k28bih2qqkpy15f7d14ibxk48p3z6sj3dj5yvh25mhv81"; depends=[]; }; flux = derive2 { name="flux"; version="0.3-0"; sha256="0pc9cab2pwrfl0fnz29wp7a398r49hvbi50jp8i2fk2rfvck21a7"; depends=[caTools]; }; - fluxweb = derive2 { name="fluxweb"; version="0.1.1"; sha256="0y05syshj3njzhqjpgs02ils4pzw6vfvny3nng0l9pdp55015b9g"; depends=[]; }; + fluxweb = derive2 { name="fluxweb"; version="0.2.0"; sha256="1ssq90fqm4p0j4g171mx208lmgz3hkxs8hgsffkawpmxgacs0gh1"; depends=[]; }; fma = derive2 { name="fma"; version="2.3"; sha256="1z7shh9ng3q7ax22cwg86y79jzz5gbchdny2rppzzm0lkvvyy5pm"; depends=[forecast]; }; fmbasics = derive2 { name="fmbasics"; version="0.3.0"; sha256="1dnf09rgwpc7n7ydlp7r5cwy2fa4vh1h9mbjqzfhk0208kz6jpl0"; depends=[assertthat fmdates lubridate tibble]; }; fmdates = derive2 { name="fmdates"; version="0.1.4"; sha256="1bbcwkh65nf2gak9b81zgg32c5ihwhmai3nc43ayf6ivhqsxw8x0"; depends=[assertthat lubridate]; }; @@ -6538,7 +6825,6 @@ in with self; { foba = derive2 { name="foba"; version="0.1"; sha256="1af8whgl66v0vwzdf03b6141k3dysdc0svymlgifcga5gqkwzsl0"; depends=[]; }; focusedMDS = derive2 { name="focusedMDS"; version="1.3.3"; sha256="18s86dbbpyajscqr9frprf2vp1zif7vh4lw5m0cjskfc6gmsdp2p"; depends=[htmlwidgets]; }; foghorn = derive2 { name="foghorn"; version="1.0.2"; sha256="17bng0fxjqrlni11vwmghimk0h38mlyjyxizrbs1fycb8khlqh94"; depends=[clisymbols crayon curl httr jsonlite rvest tibble xml2]; }; - fold = derive2 { name="fold"; version="0.2.6"; sha256="09w157h1r1sgay37240v0f1a5ra97nra7fn4im4v69avpl34yxd2"; depends=[csv dplyr encode lattice lazyeval magrittr metaplot rlang spec tidyr]; }; fontBitstreamVera = derive2 { name="fontBitstreamVera"; version="0.1.1"; sha256="0nipdlmhjv1wr3aidcl97nk6mppdkd65krgwqnhdsnv0jpfv761j"; depends=[]; }; fontHind = derive2 { name="fontHind"; version="0.1.1"; sha256="0qz3bj8vdy6jayy84p3vyxfwqll4v4qlklwq9wl981ii2k7g0vxf"; depends=[extrafont ggplot2 hrbrthemes]; }; fontLiberation = derive2 { name="fontLiberation"; version="0.1.0"; sha256="1w1rl0g4ayyp8lwppmz9yzj9cizg7i50g07216jkm1q5w0is9pmc"; depends=[]; }; @@ -6549,34 +6835,38 @@ in with self; { foolbox = derive2 { name="foolbox"; version="0.1.0"; sha256="1wqswfsanak9p0hpgbblva4b90pamlq1hcjf4xzwd3awjicsp56y"; depends=[magrittr rlang]; }; forams = derive2 { name="forams"; version="2.0-5"; sha256="1fh3m9896ksv1h7b027yb955bzyv70yafhqvn5crkzalzk3jpb0s"; depends=[vegan]; }; forcats = derive2 { name="forcats"; version="0.3.0"; sha256="0mxn1hng43zdjh1v8shd80hrszrqahcpaqxs1s1sif0qxh84d0cm"; depends=[magrittr rlang tibble]; }; - foreSIGHT = derive2 { name="foreSIGHT"; version="0.9.2"; sha256="1wr99jq8a0cbc7n5sdzr0gwnxsv8sjqy1x1lrazxswyj49xc06i4"; depends=[cowplot directlabels doParallel GA ggplot2 moments zoo]; }; + foreSIGHT = derive2 { name="foreSIGHT"; version="0.9.6"; sha256="0vz80p227fvw18rrar5d1ikz42j47jsly0h1wmiy9gww14rcnncd"; depends=[cowplot directlabels doParallel GA ggplot2 moments zoo]; }; foreach = derive2 { name="foreach"; version="1.4.4"; sha256="0j2yj0rn0d5nbzz9nq5rqqgnxhp9pbd92q4klsarl2xpsn8119y0"; depends=[codetools iterators]; }; forecTheta = derive2 { name="forecTheta"; version="2.2"; sha256="1a7ip3czm8k82kb8dx95m8q47kjhifdj51gzavd1zj9ni3vwbhfn"; depends=[forecast tseries]; }; forecast = derive2 { name="forecast"; version="8.4"; sha256="13qq25b4r4fl18yl1wb441pqk98yqhi2gidy6si1kxgifq1xyp39"; depends=[colorspace fracdiff ggplot2 lmtest magrittr nnet Rcpp RcppArmadillo timeDate tseries urca uroot zoo]; }; - forecastHybrid = derive2 { name="forecastHybrid"; version="2.2.12"; sha256="0qvn7qn5ddpiql1464rnhn7dlp015szj0v2bbs4i5v88flp831wv"; depends=[doParallel foreach forecast ggplot2 zoo]; }; + forecastHybrid = derive2 { name="forecastHybrid"; version="3.0.14"; sha256="0n97lw1hhi9qkdp37nn66b073v0sn67i4d1aqx0rwwqz6643sqib"; depends=[doParallel foreach forecast ggplot2 zoo]; }; forecastSNSTS = derive2 { name="forecastSNSTS"; version="1.2-0"; sha256="1rnf2a7sri52sm976iicab660qk07pmz8jmd3q71dg4hmc30yf9j"; depends=[Rcpp]; }; - foreign = derive2 { name="foreign"; version="0.8-70"; sha256="11mql8q3i1q593dvd351fhvkvfab25li80d1ahl4xjjzy52qdkc6"; depends=[]; }; + foreign = derive2 { name="foreign"; version="0.8-71"; sha256="1mv04w3ycz0ymsszn8aa87k6k5sb8mg8lhf1b8w4zpfrphpkkliv"; depends=[]; }; forensic = derive2 { name="forensic"; version="0.2"; sha256="0kn8wn6p3fm67w88fbarg467vfnb42pc2cdgibs0vlgzw8l2dmig"; depends=[combinat genetics]; }; forensim = derive2 { name="forensim"; version="4.3"; sha256="1jhlv9jv832qxxw39zsfgsf4gbkpyvywg11djldlr9vav7dlh3iw"; depends=[tcltk2 tkrplot]; }; - forestControl = derive2 { name="forestControl"; version="0.1.1"; sha256="0qfj4qf0d1bb1wllhpg9r8gvg353zdqv7py9a3hm33yhs3l5x0g5"; depends=[Rcpp]; }; + forestControl = derive2 { name="forestControl"; version="0.2.0"; sha256="1w1x7i57dqlrm6zzgx4k0p1zs83nrg2w2jhhvjjk9s6y1ba3whyg"; depends=[dplyr magrittr purrr Rcpp tibble]; }; forestFloor = derive2 { name="forestFloor"; version="1.11.1"; sha256="1sslxq44qmmmdhr7800bz8lj9w2l7f7x1vly3w2z7j1qdijc7nw7"; depends=[kknn randomForest Rcpp rgl]; }; forestinventory = derive2 { name="forestinventory"; version="0.3.1"; sha256="0brbg0q8j9ymvm527db7063kgs6i6flja7mxqk7yvaf3dh8wsi46"; depends=[ggplot2 plyr tidyr]; }; + forestmangr = derive2 { name="forestmangr"; version="0.9.0"; sha256="1k3n6k7jf1b5pd1vp51z47hbln3cfwdb1nl2dv28jv1ba5lb7ja6"; depends=[broom car covr curl dplyr ggplot2 ggpmisc ggthemes htmltools magrittr minpack_lm plyr psych purrr rlang rmarkdown scales systemfit tibble tidyr]; }; forestmodel = derive2 { name="forestmodel"; version="0.5.0"; sha256="09gwgsh42gkmhs8ijq5xfbbkb1hk6sjb0q32mw2ymc6x9ycr1a9j"; depends=[broom dplyr ggplot2 lazyeval tibble]; }; forestplot = derive2 { name="forestplot"; version="1.7.2"; sha256="1cqk0fwpbn4an6xn28kpvqmcp3mgv8isg8dy755sv5fkqzzjz1dg"; depends=[checkmate magrittr]; }; forestr = derive2 { name="forestr"; version="1.0.1"; sha256="0m26x7ngl89ngk1qhg50npmwli2npmjs9pfb9rg5hmx4fzr8k63i"; depends=[dplyr ggplot2 plyr]; }; + forge = derive2 { name="forge"; version="0.1.0"; sha256="13s0fd3wknx824spw18jdiciglb7mjxdycbbsjm68989ic6nfcpi"; depends=[rlang]; }; formatR = derive2 { name="formatR"; version="1.5"; sha256="19sd23vgs4ac0fwlw40j3676k6mramb0ajlq8hdw23kjwdx1jk47"; depends=[]; }; formattable = derive2 { name="formattable"; version="0.2.0.1"; sha256="1s7jjgm0j24vdwm39933ygh6xnxcfvzy4kl2mmfgas4czfcmd4rf"; depends=[htmltools htmlwidgets knitr rmarkdown]; }; formula_tools = derive2 { name="formula.tools"; version="1.7.1"; sha256="15d3ikfmsh9zszfgfkrxb3jkipl41inm7n6bhs73kwlnklnygq2g"; depends=[operator_tools]; }; formulize = derive2 { name="formulize"; version="0.1.0"; sha256="1fz8q48z4zvfglxzmmjznb7lcfrrfqmnws85jfkihs3ff43h7ccc"; depends=[recipes rlang]; }; fortunes = derive2 { name="fortunes"; version="1.5-4"; sha256="109ly9kpfn6hy294ava8795wy5z9l1bnl98hhhv8kn9naf4camdg"; depends=[]; }; + forward = derive2 { name="forward"; version="1.0.4"; sha256="0qhssp8mymy5wgzfkp1xa8s81j803g0ckg647ind6ms26320hq0x"; depends=[MASS]; }; forwards = derive2 { name="forwards"; version="0.1.0"; sha256="0pb101gdf2a4plalhhm34aixkss3lzfg8yj6yfi0d6khjmaza33i"; depends=[]; }; fossil = derive2 { name="fossil"; version="0.3.7"; sha256="188hyb3r1dnxkmqf2czh1kdzmk4mjc0v1kn1zml2yvxaxk7adsrz"; depends=[maps shapefiles sp]; }; fourPNO = derive2 { name="fourPNO"; version="1.0.4"; sha256="08l359fj39sdbq48qk05805kv25rw1wq93db0b7rvsi3iyi2lngk"; depends=[Rcpp RcppArmadillo]; }; fourierin = derive2 { name="fourierin"; version="0.2.2"; sha256="0hy033bzybdc214z10wnbqph5f83fsr13admnzwb1d2drpbljnc8"; depends=[Rcpp RcppArmadillo]; }; fpCompare = derive2 { name="fpCompare"; version="0.2.2"; sha256="10a87bpbpvrbrpyfx7ygyr9b7wd3fp79nd4g2ggl1gz3b1daqgxq"; depends=[]; }; fpa = derive2 { name="fpa"; version="1.0"; sha256="0kgpl9qq0l10h0vdd2f8vnir0kdylh1jvvv5z4d9ygj1pl9qywhk"; depends=[fields reshape]; }; - fpc = derive2 { name="fpc"; version="2.1-11"; sha256="04alsqb5gbhsjg1000d8w52pmpnlwca29r0s12f7n7mdccdv6xar"; depends=[class cluster diptest flexmix kernlab MASS mclust mvtnorm prabclus robustbase trimcluster]; }; + fpc = derive2 { name="fpc"; version="2.1-11.1"; sha256="1ari57hkgqsxh6khr6j52cfrzc0096cnn1q7ghxk2z4brdd4rznc"; depends=[class cluster diptest flexmix kernlab MASS mclust mvtnorm prabclus robustbase trimcluster]; }; fpca = derive2 { name="fpca"; version="0.2-1"; sha256="13b102026xlfb7c2rb3xsqsymm7xpmaxppaafjkb5dx0b1lz0jrc"; depends=[sm]; }; + fpeek = derive2 { name="fpeek"; version="0.1.0"; sha256="0cx5ycpnk4c0q3qqn8miz0mxbz2v5cpzvl7fh2fzfig05qsvfx31"; depends=[Rcpp]; }; fpest = derive2 { name="fpest"; version="0.1.1"; sha256="013r8295spm02j558aqvnrnbkg2g73gl5vi4lqzngbw8yr8qlkri"; depends=[]; }; fpmoutliers = derive2 { name="fpmoutliers"; version="0.1.0"; sha256="108bp3smk9jnckd5237xly4ywmal03rq1kidq5z61l6zrhc3yfh9"; depends=[arules doParallel foreach Matrix pmml pryr R_utils XML]; }; fpow = derive2 { name="fpow"; version="0.0-2"; sha256="0am3nczimcfrm9hi02vl2xxsh703qjmr2j11y014mll3f2v1l8cy"; depends=[]; }; @@ -6591,23 +6881,26 @@ in with self; { fractional = derive2 { name="fractional"; version="0.1.3"; sha256="1jz83y53s0xdphh1z3v3z7xhcmhx7rp0iiazw2vdsx2747r3rirn"; depends=[Rcpp]; }; fragilityindex = derive2 { name="fragilityindex"; version="0.1.0"; sha256="06f7w0ff8mmydgylz5a0z29fc78spvmay3sjq0rz9k44w4bb9z3q"; depends=[pbapply stringr survival]; }; frailtyEM = derive2 { name="frailtyEM"; version="0.8.8"; sha256="0mfhhb025wzwvch5bcvvfsljki34xahdkqli7lvqbhhihba00r1p"; depends=[expint ggplot2 magrittr Matrix msm numDeriv Rcpp survival tibble]; }; - frailtySurv = derive2 { name="frailtySurv"; version="1.3.4"; sha256="0nsrgkfr726hkf2x3df0jgb35b6siaq7jhydzddjf4az8d08akvw"; depends=[ggplot2 nleqslv numDeriv Rcpp reshape2 survival]; }; - frailtypack = derive2 { name="frailtypack"; version="2.12.6"; sha256="0w2v5ik4ryvl5hph9cwxcrrglwpqbyirfrayyw9g0l1wdc1mfvi4"; depends=[boot MASS nlme statmod survC1 survival]; }; + frailtyHL = derive2 { name="frailtyHL"; version="2.2"; sha256="0i6r889i4f07w6992nfsfr439psz6k3q79nkkk3zwf5fv5r6bcky"; depends=[cmprsk Matrix survival]; }; + frailtySurv = derive2 { name="frailtySurv"; version="1.3.5"; sha256="0hkl62srfm26z48nsg0s6yssrwdmpv17qzyd9fjkxir6ghhvxvzy"; depends=[ggplot2 nleqslv numDeriv Rcpp reshape2 survival]; }; + frailtypack = derive2 { name="frailtypack"; version="2.13.2"; sha256="0vchpw94qn6nymx4wi991bd6v1y0r9b6d7lmwdhc7ipn8gv0sllf"; depends=[boot MASS nlme statmod survC1 survival]; }; frair = derive2 { name="frair"; version="0.5.100"; sha256="1j557dqvc5xiz7xbl4h7vp55pc3hly8ci01qy36p02vlxhzf4hj3"; depends=[bbmle boot lamW]; }; frambgrowth = derive2 { name="frambgrowth"; version="0.1.0"; sha256="1xmy1zxp7aa2n8frlxhn1bl41zda1jldvvxb3q41yam3pslc8m1q"; depends=[]; }; franc = derive2 { name="franc"; version="1.1.1"; sha256="0agrzdrgfw4a3jn6a2867rf99a87ngv6wi73ys2l7gr7mkpq54v5"; depends=[jsonlite]; }; frbs = derive2 { name="frbs"; version="3.1-0"; sha256="0ngvi7lg6aviwic8f4ya03khyzh3ksglpmsnrdjjznwj874y2wim"; depends=[]; }; - freegroup = derive2 { name="freegroup"; version="1.0"; sha256="1x0n3mjm37b83lxa0bcylbrn1c0sdvl54mz317a8g2y2ydk7h3zi"; depends=[magrittr]; }; + fredr = derive2 { name="fredr"; version="1.0.0"; sha256="1hv51m0ihdpb73rp2gwj2q2xpjzlqpf9p3xzqdmy9nhwpfbj14nh"; depends=[httr jsonlite rlang tibble]; }; + freegroup = derive2 { name="freegroup"; version="1.1-0"; sha256="0ssshs2d6l2ip1xx9x581w0cdnd2459a1mh360ybwajkjgak2ci6"; depends=[magic magrittr plyr]; }; freeknotsplines = derive2 { name="freeknotsplines"; version="1.0.1"; sha256="1yl53rnngrpj5mv1fgd0rgiqaw431g4ckxl1bq0l712647njx02a"; depends=[]; }; freestats = derive2 { name="freestats"; version="0.0.3"; sha256="0b18n8idap089gkmjknzzb94dvs2drpdqs0mrw7dqnacxgbbqwfj"; depends=[MASS mvtnorm]; }; freesurfer = derive2 { name="freesurfer"; version="1.6.1"; sha256="1ibhl5sbz85skkawmfdr9df6wdq6b3bl6cdvykx0gcszmd3fiabh"; depends=[neurobase R_utils reshape2]; }; - freetypeharfbuzz = derive2 { name="freetypeharfbuzz"; version="0.1.0"; sha256="0hz9wnn1pi09v4azi02ai7hh4iwml90pdrs329y3p8qzxmvry56b"; depends=[fontquiver]; }; + freetypeharfbuzz = derive2 { name="freetypeharfbuzz"; version="0.2.4"; sha256="1wilz554dx4glgm8nzd5gzbi6ja6gynmj3fx61s1sqas1jnby1gh"; depends=[fontquiver]; }; freqdist = derive2 { name="freqdist"; version="0.1"; sha256="1pb45jabv9s3qa7v1isd5wm9b0g9p04q5h18spcaax8397s0d2fv"; depends=[]; }; freqdom = derive2 { name="freqdom"; version="2.0.1"; sha256="0ig0ygnlcb5ndjjm5x8jpp37gvgwli9xv6zsvbbgfh72q418qswp"; depends=[matrixcalc mvtnorm]; }; freqdom_fda = derive2 { name="freqdom.fda"; version="0.9.1"; sha256="15wq9s3v441dybc8kglpbv9hdvsr9rjjq4qp4d2ipxglfp0iqj9p"; depends=[fda freqdom mvtnorm]; }; freqparcoord = derive2 { name="freqparcoord"; version="1.0.1"; sha256="011p8xh0i0x0w5rv5qz5a7fxwdhxd8l2bqi9bxv5almxd0y7ajqx"; depends=[FNN GGally ggplot2 mvtnorm]; }; frequencies = derive2 { name="frequencies"; version="0.1.1"; sha256="0d52kf4r13n59990xhra9i6gfvs4sn7ix54d0c0g56p1rj7hnh79"; depends=[dplyr]; }; - frequencyConnectedness = derive2 { name="frequencyConnectedness"; version="0.2.0"; sha256="02ha5jfkjaxyfp7x1h0xx32ijha2dh7h52z687a9y9azrqvjv0jp"; depends=[knitr pbapply urca vars]; }; + frequency = derive2 { name="frequency"; version="0.3.1"; sha256="0m3vgcwldl7zv0nwdwfz80qanibmfp8j5iv79kydhrmzzr04rbf5"; depends=[DT ggplot2 gtools knitr rmarkdown]; }; + frequencyConnectedness = derive2 { name="frequencyConnectedness"; version="0.2.1"; sha256="006cb7x65if7md5w6w90nacdmg39pv7dc8zxvchc52kmfzlps0ds"; depends=[knitr pbapply urca vars]; }; freqweights = derive2 { name="freqweights"; version="1.0.4"; sha256="1iy2vzv4wc2883yq8r31wpspa7gm7cd4wkgvbh7mwafll463zni2"; depends=[biglm data_table dplyr FactoMineR fastcluster plyr]; }; frite = derive2 { name="frite"; version="0.1.0"; sha256="0qi03m8n05hx0ghh12zqrjvsqhyir4q9qmxb657d4vzajmih0bhn"; depends=[assertthat magrittr purrr stringr tictoc]; }; frm = derive2 { name="frm"; version="1.2.2"; sha256="1dl0vca9r2dams99sc13pfpi0b3yb02x59f4c1jz07zz005c8l23"; depends=[]; }; @@ -6618,7 +6911,7 @@ in with self; { frontier = derive2 { name="frontier"; version="1.1-2"; sha256="1vpjd57cc6niwqibhz1ib46zj57d5a9m40yaq7kr9awk9di65ryz"; depends=[Formula lmtest micEcon miscTools moments plm]; }; frontiles = derive2 { name="frontiles"; version="1.2"; sha256="08qq25wbylvhvmq34wggyj0hwdlxfs9rfs8gjqsrg50xccchniqi"; depends=[classInt colorspace rgl sp]; }; frt = derive2 { name="frt"; version="0.1"; sha256="1qy76a1wkznaqzlyj1nq74mf1pnyly1s8gnff8q30zfccqk68cxv"; depends=[]; }; - fs = derive2 { name="fs"; version="1.2.3"; sha256="1kbdz8hl96b2gs5vrfnwzgimn8qf8gk6ggicr7jylxzp21zzsry5"; depends=[Rcpp]; }; + fs = derive2 { name="fs"; version="1.2.6"; sha256="0kqqaqqml8x3r1mdld40iwns0ylj2f52qsdh1vcn39f7w7c2ka8j"; depends=[Rcpp]; }; fscaret = derive2 { name="fscaret"; version="0.9.4.4"; sha256="18fhyfl3f8syyc3g937qx87dmwbv7dray6b97p1s6lnssiv61gsw"; depends=[caret gsubfn hmeasure]; }; fsdaR = derive2 { name="fsdaR"; version="0.2-21"; sha256="121khfqy1ixqp86cl3cngc40zxjpd4nm5k0lk558nxcfgyyzvx8y"; depends=[rJava robustbase]; }; fsia = derive2 { name="fsia"; version="1.1.1"; sha256="0id7cnswrqylgpwjil1zfn89ryrdpl20fim8x1srl8s1hm5bg35r"; depends=[]; }; @@ -6628,30 +6921,31 @@ in with self; { fsthet = derive2 { name="fsthet"; version="1.0.1"; sha256="0z6az1jcvdahgn97r6cpj1s6fn0lvr7j12gcw2r7wbpajrvyl5j6"; depends=[]; }; ftDK = derive2 { name="ftDK"; version="1.0"; sha256="1xs2rr2afjza97kpym5zkas3k78pilxjlh7lp1gc66banldr71g2"; depends=[dplyr httr pbapply purrr tibble]; }; ftnonpar = derive2 { name="ftnonpar"; version="0.1-88"; sha256="0df9zxwjpfc939ccnm1iipwhpf76b34v0x74nsi1mm1g927dfl0i"; depends=[]; }; - fts = derive2 { name="fts"; version="0.9.9"; sha256="1qgp8xdwr5pp2b7nd8r717a6p8b6izwqrindx2d1d0lhhnqlcwhv"; depends=[BH zoo]; }; - ftsa = derive2 { name="ftsa"; version="4.8"; sha256="1qwz3mk9dnf44016dy2dgpq0ivs2wzi5kq24jw3lbkgdjig2h6f5"; depends=[colorspace fda forecast MASS pcaPP rainbow sde]; }; + fts = derive2 { name="fts"; version="0.9.9.2"; sha256="08pwhi19db173d4nsk5rl8xa8qmaddj4bn3cjxb8ql4kny59i57q"; depends=[BH zoo]; }; + ftsa = derive2 { name="ftsa"; version="5.1"; sha256="1j8cq0fa2lkiyvaj4xcg60qz158fphakd9l2wgdv0qv1d1wsnp6g"; depends=[colorspace fda forecast MASS pcaPP rainbow sde]; }; ftsspec = derive2 { name="ftsspec"; version="1.0.0"; sha256="12f9yws1r26i240ijq0xqprl3pgbw50wv68jsm75ycplbs2jsyhs"; depends=[sna]; }; fueleconomy = derive2 { name="fueleconomy"; version="0.1"; sha256="1svy5naqfwdvmz98l80j38v06563vknajisnk596yq5rwapl71vj"; depends=[]; }; fugeR = derive2 { name="fugeR"; version="0.1.2"; sha256="0kd90s91vzv0g3v9ii733h10d8y6i05lk21p5npb3csizqbdx94l"; depends=[Rcpp snowfall]; }; fullfact = derive2 { name="fullfact"; version="1.2"; sha256="13729m2s8b32d9i9c6g2r0zkcqsw9p7nhdig8isarfn4bjzqhf71"; depends=[afex lme4]; }; - fulltext = derive2 { name="fulltext"; version="1.0.1"; sha256="08pwasz1rpnnq81mvaldjiqv79wbvw5ma89skk95h0k2pbahblka"; depends=[aRxiv crminer crul data_table hoardr httr jsonlite magrittr microdemic pdftools rcrossref rentrez rplos storr tibble whisker xml2]; }; + fulltext = derive2 { name="fulltext"; version="1.1.0"; sha256="195281yyjim7giim326lmk69xayw6n4xdkkym3azi6nj6a3g6f0v"; depends=[aRxiv crminer crul data_table digest hoardr httr jsonlite magrittr microdemic pdftools rcrossref rentrez rplos storr tibble xml2]; }; fun = derive2 { name="fun"; version="0.1-0"; sha256="0z4nq2w1wz1clc7cf87pf870hayxq5mpzhllfgwj4mmh2xpphnrf"; depends=[]; }; - funData = derive2 { name="funData"; version="1.2"; sha256="0y3ar26d6hxc4bg263qjqfb92ivhkphzizhz91wrzbfxha9dcrzz"; depends=[abind fields foreach]; }; + funData = derive2 { name="funData"; version="1.3-2"; sha256="0qifkrw4a6hrm8msxcy1dxrfiw88xmxw8avg5ls7bginq4bfsk51"; depends=[abind fields foreach]; }; funFEM = derive2 { name="funFEM"; version="1.1"; sha256="08798lvryykrxfvp2297anzl4gi81gwvc1qyyzq16nafjf65kwfy"; depends=[elasticnet fda MASS]; }; - funHDDC = derive2 { name="funHDDC"; version="2.0"; sha256="0bd58pdsg9036vk54fayvzr6il56bamrvn5vhqc3g92papp9jlm8"; depends=[fda MASS]; }; - funModeling = derive2 { name="funModeling"; version="1.6.7"; sha256="0blanw0aw7qvcs6a8ryaqvi322gaz65g6flijkbssf681im9pmjr"; depends=[dplyr entropy ggplot2 gridExtra Hmisc lazyeval moments pander RColorBrewer reshape2 ROCR scales]; }; + funHDDC = derive2 { name="funHDDC"; version="2.2.0"; sha256="1s4k6wvs6x88c7whw0bkb3pfhp8wqcmzlsv8div9df0i2fisf3zr"; depends=[fda MASS]; }; + funLBM = derive2 { name="funLBM"; version="1.0"; sha256="0krx5v1lakrrxk0j249k7sr7c6r40yg1l8l10laf4444j2qn8rjp"; depends=[fda funFEM]; }; + funModeling = derive2 { name="funModeling"; version="1.6.8"; sha256="16kivxwxds4lmhag2y17bsjpfp08ms17w4n5wznmlvpa3sc7qp1z"; depends=[dplyr entropy ggplot2 gridExtra Hmisc lazyeval moments pander RColorBrewer reshape2 ROCR scales]; }; funbarRF = derive2 { name="funbarRF"; version="1.0.1"; sha256="05smi717j4zhbrfqjyvx1rzckygigg1x8c6kb3brbpv8w33gcvx7"; depends=[BioSeqClass Biostrings bold randomForest]; }; funchir = derive2 { name="funchir"; version="0.1.4"; sha256="1mbsy65628q117c2k01wvibpjd3ibigy4yc1c8m0rf9jwsc67qjb"; depends=[data_table]; }; functional = derive2 { name="functional"; version="0.6"; sha256="120qq9apg6bf39n9vnp68db5rdhwvnj2vi12a8j8243vq8kqxdqr"; depends=[]; }; functools = derive2 { name="functools"; version="0.2.0"; sha256="0g62jdia3n09vq8mx1m2r4nl3jfcadzpym0wkldzzzjcfs90vl6b"; depends=[]; }; - funcy = derive2 { name="funcy"; version="0.9.0"; sha256="1b6ckqi2sqg324309l0mqcjpqy5idmm71s30axflr5bcrhxkkiz3"; depends=[calibrate car caTools cluster fda fields flexclust kernlab MASS Matrix plyr sm wavethresh]; }; - fungible = derive2 { name="fungible"; version="1.5"; sha256="1f4q26rfl7d35ng5nx11mzzv9fhk4zg62j63c59i649wcx1xsan9"; depends=[e1071 lattice MASS mvtnorm nleqslv R2Cuba stringr]; }; + funcy = derive2 { name="funcy"; version="1.0.0"; sha256="13r3n28fpzg4siqsdgwklgm7y38mjpd6dglwdpn8fyiirh1xmas0"; depends=[calibrate car cluster fda fields flexclust kernlab MASS Matrix plyr sm wavethresh]; }; + funique = derive2 { name="funique"; version="0.0.1"; sha256="0p9k4nxjns1xid9vmslkaap0hm6yq6pbyvylgygd808if4q1z8k6"; depends=[]; }; funnelR = derive2 { name="funnelR"; version="0.1.0"; sha256="143lb048krgh8rkkz6sm8h464kdy62w29fvvyar795vqi10bb5fy"; depends=[ggplot2]; }; funr = derive2 { name="funr"; version="0.3.2"; sha256="11mjd1ba9kwawh7k5py54mkq4g1df79d7qivan8fj11qfwfzm679"; depends=[]; }; funrar = derive2 { name="funrar"; version="1.2.2"; sha256="179kxhwkd431d2n917mzjnr5qvh09f0hdm2c78lww4ijb54dhn0l"; depends=[cluster dplyr]; }; funreg = derive2 { name="funreg"; version="1.2"; sha256="199zvqali0sb0z4yp20rm5da0kd7z3rgv47g1cb1apsbcw0cq51n"; depends=[MASS mgcv mvtnorm]; }; funtimes = derive2 { name="funtimes"; version="5.0"; sha256="0xq0n3939rsrz7dna4d3d7mrpxad2xswnblsc4a88nbq6cmx5c70"; depends=[dbscan Jmisc Kendall]; }; - furniture = derive2 { name="furniture"; version="1.7.9"; sha256="16nz028cgfhhn4xvhkzy6y1a1p6x4xfzna50q4jaih0pd980i07a"; depends=[knitr magrittr]; }; + furniture = derive2 { name="furniture"; version="1.8.0"; sha256="1f1s0zwishm73rgdj93z1975manc3a7v51mzz1478h0jp5kd2pql"; depends=[cli crayon dplyr knitr magrittr rstudioapi tibble]; }; furrr = derive2 { name="furrr"; version="0.1.0"; sha256="1ld9aa9hydna94hgm6p91zjbfv1dz1vsgchjlpknkg6irbvkfafx"; depends=[future globals purrr rlang]; }; fuser = derive2 { name="fuser"; version="1.0.1"; sha256="17lsfpd9hdichj3wflac896zyjbq7a8w2gmlgj8nbgg80f646fgr"; depends=[glmnet irlba Matrix Rcpp RcppEigen RSpectra]; }; fusionclust = derive2 { name="fusionclust"; version="1.0.0"; sha256="1h03nlk4gnz4j5h2h5bxazkka2qq983h7nglm1ghzqvbqjk6sv37"; depends=[bbmle]; }; @@ -6661,73 +6955,77 @@ in with self; { futile_options = derive2 { name="futile.options"; version="1.0.1"; sha256="0w15agpi88y3qkv6fl72zy2pzyplzgvnj41a4ixhg64mw1sck73s"; depends=[]; }; futile_paradigm = derive2 { name="futile.paradigm"; version="2.0.4"; sha256="14xsp1mgwhsawwmswqq81bv6jfz2z6ilr6pmnkx8cblyrl2nwh0v"; depends=[futile_options RUnit]; }; futility = derive2 { name="futility"; version="0.2"; sha256="0njckhwmawqhiznv241yjghh99wl72c4xknp9nzbmvi5j575rnlh"; depends=[]; }; - future = derive2 { name="future"; version="1.8.1"; sha256="1bpx6b85dd8xq37527h72qszz2dg810xcp975z93hymk1d8hf41a"; depends=[digest globals listenv]; }; - future_BatchJobs = derive2 { name="future.BatchJobs"; version="0.15.0"; sha256="0r1bnp9mnv8jk9d6dpr94cqn4zihpm7cgxqj0c3l0x9b6i0ny3z2"; depends=[BatchJobs future R_utils]; }; - future_apply = derive2 { name="future.apply"; version="1.0.0"; sha256="1jippm805hda75h24grp9pwypf10cp4m4hq55vni7qa9qhyi7r2x"; depends=[future globals]; }; - future_batchtools = derive2 { name="future.batchtools"; version="0.7.0"; sha256="0sk2qs6fgq241zibjxkmvdgv7xq0lablwwd6px6rxi7asxjv7zbh"; depends=[batchtools future]; }; - future_callr = derive2 { name="future.callr"; version="0.3.0"; sha256="0z9gmy46n823y38hq4xgc1x3v88hmz5sdfa6xsp0mk1bwlc94q8f"; depends=[callr future]; }; + future = derive2 { name="future"; version="1.10.0"; sha256="07dmb5gn29pjaya3ljmpbag1wk27i3dr63mcxgjgzkfj9dgshp32"; depends=[digest globals listenv]; }; + future_BatchJobs = derive2 { name="future.BatchJobs"; version="0.16.0"; sha256="1j4gjgqy2hikpl9x1jf0qvncyi5dsfz3hi4v4x0kw7hzlsgc6f00"; depends=[BatchJobs future R_utils]; }; + future_apply = derive2 { name="future.apply"; version="1.0.1"; sha256="1i5apv9ywwb5xhq4g0lk5q1sy23zhdvdsrx8fax3nyprinvw5a7l"; depends=[future globals]; }; + future_batchtools = derive2 { name="future.batchtools"; version="0.7.1"; sha256="0mgppqzw6qgm8dhp9kxh1nb3xpp8mw2aj1m1yaj3wivkb22fdicn"; depends=[batchtools future]; }; + future_callr = derive2 { name="future.callr"; version="0.3.1"; sha256="0h1nm65f36bpb6anjiyrb3vni5rzx4x047l0a396d2321cxszv7l"; depends=[callr future]; }; futureheatwaves = derive2 { name="futureheatwaves"; version="1.0.3"; sha256="122b2z86bzxfch67y6cpq8wj62mw0dgkzbmnpwi247kdx7w5mw1f"; depends=[data_table dplyr ggplot2 ggthemes leaflet Rcpp stringr tidyr]; }; fuzzr = derive2 { name="fuzzr"; version="0.2.2"; sha256="1cwq7a5j6lzrlz9dw3hsfap988rh1kkgf03yni7c33zl69xp5w77"; depends=[assertthat progress purrr]; }; fuzzyFDR = derive2 { name="fuzzyFDR"; version="1.0"; sha256="0zd8i9did0d9gp42xjmwrccm32glabvvy08kl8phhwb1yaq53h7w"; depends=[]; }; fuzzyRankTests = derive2 { name="fuzzyRankTests"; version="0.3-10"; sha256="1xj5xsm2s4ylv3b8v80qny201iddjym07h8d50asas7xy1k7945z"; depends=[]; }; fuzzyforest = derive2 { name="fuzzyforest"; version="1.0.5"; sha256="1ifhvdzn0rs8gxqmpz8w1prxg3pxs5jqx5lh0r4i5rai49qjy3sb"; depends=[doParallel doRNG foreach ggplot2 mvtnorm randomForest]; }; fuzzyjoin = derive2 { name="fuzzyjoin"; version="0.1.4"; sha256="06r103hshc6xcjllv5qfiw3i1ddz4c8svy0i4j0avnffaarlc2wa"; depends=[dplyr geosphere purrr stringdist stringr tidyr]; }; - fuzzyreg = derive2 { name="fuzzyreg"; version="0.3"; sha256="1mg4c71d0yc42y4iqdwkw13nlkq09parp2xwi1fv700vmnn4gk5w"; depends=[limSolve quadprog]; }; + fuzzyreg = derive2 { name="fuzzyreg"; version="0.4"; sha256="1m6vfagd5qnxdmdh2ya0vmz8jvbf0fwn95zgqcjwgvmwyafkw5m8"; depends=[limSolve quadprog]; }; fuzzywuzzyR = derive2 { name="fuzzywuzzyR"; version="1.0.3"; sha256="1kbli1m44317m95a0r34vza9p27vd9ala05jrbrdkadninwdynal"; depends=[R6 reticulate]; }; fwdmsa = derive2 { name="fwdmsa"; version="0.2"; sha256="0p0kh8am6gajfaixkvq61f12hfbm6chl9372yzn1yilhiyvqdxgp"; depends=[]; }; fwi_fbp = derive2 { name="fwi.fbp"; version="1.7"; sha256="1wk9cr0kk6zkbf111bv87n7b1wwx1qrsbjxydvbjvy8bgz0nfa62"; depends=[]; }; - fwsim = derive2 { name="fwsim"; version="0.3.3"; sha256="1ix4sl2krlr0b0wfgvy73qhpmkjymqcci3q3v60j20zapi55gxn2"; depends=[Rcpp]; }; + fwsim = derive2 { name="fwsim"; version="0.3.4"; sha256="0fy87c1x5hihfcppv1pvk3b0pwl6ygqpka40x55gbpkgssdigb1l"; depends=[Rcpp]; }; fxregime = derive2 { name="fxregime"; version="1.0-3"; sha256="15fh8yhcba2gw2xfd0yiw5ssvbgb62l6vb28bxz71ckdyv9nsahk"; depends=[car sandwich strucchange zoo]; }; g_data = derive2 { name="g.data"; version="2.4"; sha256="14a4m0v38p3j1k1kymkxwydlgm8b73hlx9m80sg1l4aj38fvflzl"; depends=[]; }; g2f = derive2 { name="g2f"; version="0.2"; sha256="1jsmiv6v8ilpxg1k1npcgqa467hpyw7mzh5m8dp7bxar4j5npsp4"; depends=[KEGGREST minval sybil]; }; + g3viz = derive2 { name="g3viz"; version="0.1.3"; sha256="0c1filziyp6bqi7i92xcrip10hs0rwxxcnawhqll80jk66lc1kl2"; depends=[cgdsr htmlwidgets jsonlite stringr]; }; gCat = derive2 { name="gCat"; version="0.1"; sha256="10990ilsjk52kqkcdngj4nq0kcbn4w1syxl1mqjq2n5g1l002yjy"; depends=[]; }; + gDefrag = derive2 { name="gDefrag"; version="0.1"; sha256="1xzp12p7w4gsy88hjl1n0ylymjbm3wqypqavkb97if94mwhlfqsh"; depends=[igraph maptools rgdal rgeos sp]; }; gIPFrm = derive2 { name="gIPFrm"; version="3.1"; sha256="08rfdac442picbw1r3xyxjzf2dc57svg44am0714z4r72mshvj04"; depends=[]; }; gLRTH = derive2 { name="gLRTH"; version="0.2.0"; sha256="1drmmr576n3pbr0q1cnnx4k7r4iz061n2cizv1kpr3wcc1g291pn"; depends=[]; }; - gMCP = derive2 { name="gMCP"; version="0.8-13"; sha256="19chbcqiw13rppp7s7y8vf42spwnna78xl2mb37n96s23fpj3qpf"; depends=[CommonJavaJars JavaGD MASS Matrix multcomp mvtnorm PolynomF rJava xlsxjars]; }; + gMCP = derive2 { name="gMCP"; version="0.8-14"; sha256="11q2d4a352z7c0ln10mdpms1cl4bh5hqmg9avmbxw54z4i00mdvy"; depends=[CommonJavaJars JavaGD MASS Matrix multcomp mvtnorm PolynomF rJava xlsxjars]; }; gMOIP = derive2 { name="gMOIP"; version="1.1.0"; sha256="122yzwicsq7q98x5dxk1mmf148v2w64jz3pd3535himx85gy9zy3"; depends=[ggplot2 ggrepel]; }; gMWT = derive2 { name="gMWT"; version="1.1"; sha256="1ws96x3vjswh6m6s9zn3r9gp7xp6ybdkkxsq9a73ng2zqz2qjdl0"; depends=[clinfun Rcpp RcppArmadillo]; }; gPCA = derive2 { name="gPCA"; version="1.0"; sha256="1ylb1d24dxnzpws9bbanwhyizjr3ljky2bhrph4c5yaq0zwwbrkw"; depends=[]; }; gPdtest = derive2 { name="gPdtest"; version="0.4"; sha256="00dlhnklfg2yp4hp7yjgr2nfswv22c007xq1mxdbkll62zgd94mq"; depends=[]; }; - gProfileR = derive2 { name="gProfileR"; version="0.6.6"; sha256="1n6cj12j102b4x9vhyl4dljp1i0r43p23cnhqbx4als2xfxdlqgi"; depends=[plyr RCurl]; }; + gProfileR = derive2 { name="gProfileR"; version="0.6.7"; sha256="12nwidbnqmnfy5dnqga26byslvdnkrpz2fi19qfcby6xx0wbndk7"; depends=[plyr RCurl]; }; gRain = derive2 { name="gRain"; version="1.3-0"; sha256="0xb746pyh8k8w1a8nz7z41bflx5xr0cqdq5l5wj7j464zv2cw6jy"; depends=[functional graph gRbase igraph magrittr Rcpp RcppArmadillo RcppEigen]; }; gRapfa = derive2 { name="gRapfa"; version="1.0"; sha256="07yzwzna9pdyzndxk6wwyl6v3gkfc7dvy1ixmdl3d38mcl1ahwyq"; depends=[igraph]; }; - gRbase = derive2 { name="gRbase"; version="1.8-3"; sha256="143qvs5mwypswdq344a48kzn83sx9jskdr9w6kxa3fzhdcqlhi7d"; depends=[graph igraph magrittr Matrix RBGL Rcpp RcppArmadillo RcppEigen]; }; + gRbase = derive2 { name="gRbase"; version="1.8-3.4"; sha256="0b6cl9p3px99vw9jx8wdcm4sh8v7zr6l4w0mk7ilrgbwzg198pyk"; depends=[graph igraph magrittr Matrix RBGL Rcpp RcppArmadillo RcppEigen]; }; gRim = derive2 { name="gRim"; version="0.2-0"; sha256="0ihl4vsnp6xkcpcf37p2xcqnbvyvjamcz5060f1kirn8xzwzq29y"; depends=[gRain graph gRbase igraph Rcpp RcppArmadillo]; }; gSEM = derive2 { name="gSEM"; version="0.4.3.4"; sha256="18kh41ibvfflz59gykiq7j2c6a72i8b0w8c2mcprd1nzhnyhvmhy"; depends=[DiagrammeR htmlwidgets knitr MASS]; }; gSeg = derive2 { name="gSeg"; version="0.5"; sha256="1f3appvy78adv9jll47smgw2apm3dkm9zrm17hhdxmcnqypd7ias"; depends=[]; }; + gStream = derive2 { name="gStream"; version="0.1.0"; sha256="02ww3s3pc7x8kvi697rfilpl5swi33v4k0q5wkv4rf6mc319m5qk"; depends=[]; }; gTests = derive2 { name="gTests"; version="0.2"; sha256="1h1sd8mrzcniq7rx7frdlxwpnsn8lifng1x99fqq703hs3znl1yq"; depends=[ade4]; }; gWQS = derive2 { name="gWQS"; version="1.1.0"; sha256="03v6b90745nd0jxil39rgay1yh1lrg9p1wbi22yffd29a2arsf22"; depends=[ggplot2 Rsolnp tableHTML ztable]; }; gWidgets = derive2 { name="gWidgets"; version="0.0-54"; sha256="13lbbbnmkvb559klgsnz0q27qlyv102xakb6yccxsxjw249hm8c2"; depends=[]; }; gWidgets2 = derive2 { name="gWidgets2"; version="1.0-7"; sha256="02jrv5x7s3jm2ajpdvgsp4zkn65gjy96rvgdxhf9smp1kb6llzg0"; depends=[digest]; }; gWidgets2RGtk2 = derive2 { name="gWidgets2RGtk2"; version="1.0-7"; sha256="14c933j0wj3lb5da75zxg3w3mfqh0nqk8rczbi4dnqd8sna6jks9"; depends=[gWidgets2 memoise RGtk2]; }; - gWidgets2tcltk = derive2 { name="gWidgets2tcltk"; version="1.0-5"; sha256="1g0p7bl76rkkrixzw4b1s99gyvi8b5a4vbnsj2wmy7y9grbzndkm"; depends=[digest gWidgets2 memoise]; }; + gWidgets2tcltk = derive2 { name="gWidgets2tcltk"; version="1.0-6"; sha256="0arh0yxx63m4df1ccrv0q3vkjncwv3ink8vkalp6ashi2932yfma"; depends=[digest gWidgets2 memoise]; }; gWidgetsRGtk2 = derive2 { name="gWidgetsRGtk2"; version="0.0-86"; sha256="0b1xqffbzxlaaaqf1vzfl0a7b6wnnslsp8v5fbxblv7w951rsc4m"; depends=[cairoDevice gWidgets RGtk2]; }; gWidgetstcltk = derive2 { name="gWidgetstcltk"; version="0.0-55"; sha256="06991rqh4927bal7j718bn2ziy6rws8yq682lmp5vbqhdd36afv2"; depends=[digest gWidgets]; }; gafit = derive2 { name="gafit"; version="0.5.1"; sha256="160z3cv22prf7118447dla9g1gimwkfad8zdil3fg8n4l22rk51a"; depends=[]; }; gaiah = derive2 { name="gaiah"; version="0.0.2"; sha256="1qc3crjxramyxl86dp8mcmvskixny7x6ji0jqf5dqf5r5qc7zrs9"; depends=[dplyr geosphere ggplot2 lazyeval magrittr maptools raster rgeos sp stringr tidyr]; }; gains = derive2 { name="gains"; version="1.2"; sha256="1nmrhc7qjlyzn04r1qyjdws5fin3idmi789kbxzilax12ya8xr7k"; depends=[]; }; + galgo = derive2 { name="galgo"; version="1.4"; sha256="1v150flk1x0rixpgvi8crd5iq28w4jk8h2iyv48hz5qmm2pvz1li"; depends=[e1071 MASS nnet R_oo randomForest rpart]; }; galts = derive2 { name="galts"; version="1.3.1"; sha256="0jg0yng1kc6s0qdhq8ps38dsxdcrgdcn8dl2dlclw6rcbknb6h4k"; depends=[DEoptim genalg]; }; - gam = derive2 { name="gam"; version="1.15"; sha256="1w6icadyfyqlkz5qijwifa3z96d460m88k8b2iaqj0cf6agmydhy"; depends=[foreach]; }; + gam = derive2 { name="gam"; version="1.16"; sha256="0blg4gghw5068z180c4bf0s77ky0wspgsi6xpcfnkf2rkvj34182"; depends=[foreach]; }; gamCopula = derive2 { name="gamCopula"; version="0.0-4"; sha256="1nj5pxcbr6k7k1m44ky306yycpx20pw8awlx7lzyw1rx1hrv5ivb"; depends=[copula doParallel foreach gsl igraph MASS mgcv numDeriv VineCopula]; }; gamRR = derive2 { name="gamRR"; version="0.4.0"; sha256="0grd9d7rar4lq82v55k7c2d3h0g2lh7ny4bpxanqgrq02jkpnz1p"; depends=[boot mgcv]; }; gamair = derive2 { name="gamair"; version="1.0-0"; sha256="13n2n4b7givzvia93awy7ym0gihl4lr08w3a6ny2pq0f3zbhzw97"; depends=[]; }; - gambin = derive2 { name="gambin"; version="2.3.0"; sha256="1kwh8s191m6gsjczqc3svf6zp1k4zi86rqz7s94rahg84vwh6a9b"; depends=[doParallel foreach gtools]; }; + gambin = derive2 { name="gambin"; version="2.4.0"; sha256="0fbn553g61l524x7yraj89plrbf66ywgy674b5hyfcfkx0xaim8n"; depends=[doParallel foreach gtools]; }; gamboostLSS = derive2 { name="gamboostLSS"; version="2.0-1"; sha256="06n2xk7k24gz95jy1cr6shpfd89ylispq6mn3fvxblqdf8vhdixj"; depends=[mboost stabs]; }; gamboostMSM = derive2 { name="gamboostMSM"; version="1.1.87"; sha256="0if0x92lch57ksll8d5i3jzk0kh40593b20c17g3hvc33920c7r0"; depends=[mboost]; }; gamclass = derive2 { name="gamclass"; version="0.58"; sha256="0dldqnbdgrafkm1a9kb0gyyfs0s2g31iv4ndlnnm2rd63ga4xxsn"; depends=[ape car DAAG KernSmooth lattice latticeExtra MASS mgcv randomForest rpart]; }; games = derive2 { name="games"; version="1.1.2"; sha256="01hbbr2hsxi5j9axpdl0jihpd55pa9hacjxmab8p7cixk3xqqqbf"; depends=[Formula MASS maxLik stringr]; }; - gamesGA = derive2 { name="gamesGA"; version="1.1.3.2"; sha256="0srxsm1zhrx1dpm94mkcsds6rwkx9gi9yfbrkzylhrxgi4g8pvwp"; depends=[shiny]; }; + gamesGA = derive2 { name="gamesGA"; version="1.1.3.5"; sha256="1xvy0azyjcr077lwpnh6083ypv0j8qjd0frkc6z6vs6fgbv2lv5p"; depends=[shiny]; }; gamlr = derive2 { name="gamlr"; version="1.13-5"; sha256="0fc27b6qcm01drb7pb14wri2hlb464jig3x7sb8njwrxcqqia14n"; depends=[Matrix]; }; - gamlss = derive2 { name="gamlss"; version="5.1-0"; sha256="00hiy8k3hls8igkcl2yzgx15mmj4f305zssav5bwsxwijj4m4pv6"; depends=[gamlss_data gamlss_dist MASS nlme survival]; }; + gamlss = derive2 { name="gamlss"; version="5.1-2"; sha256="0sq1gvsj4ydmyz3xip5565c15022rz98p979lp39i3wafrs4wh0d"; depends=[gamlss_data gamlss_dist MASS nlme survival]; }; gamlss_add = derive2 { name="gamlss.add"; version="5.0-1"; sha256="1agk6pfm04hf9dp5r6dvxqkj1hykx23a16q7vch2sg752z0dadgk"; depends=[gamlss gamlss_dist mgcv nnet rpart]; }; gamlss_cens = derive2 { name="gamlss.cens"; version="5.0-1"; sha256="1s83dgifidvc6cbrqirwlvwfzg08mlhmxxiqkbmnsy09i5j9fzd3"; depends=[gamlss gamlss_dist survival]; }; - gamlss_data = derive2 { name="gamlss.data"; version="5.0-1"; sha256="0q0ah8x141172fxh25bk913zzs5njyn24xkah23px1zsh4684gsy"; depends=[]; }; + gamlss_data = derive2 { name="gamlss.data"; version="5.1-0"; sha256="1hg63z4pybmlihnckv9r5nxckx7rjss2rkajgrkraqxal6747b8a"; depends=[]; }; gamlss_demo = derive2 { name="gamlss.demo"; version="4.3-3"; sha256="01p6abppwbnh2a2ks1g08z4iwq2fxf125y9s4qzssybsn76a3gf3"; depends=[gamlss_dist gamlss_tr rpanel]; }; - gamlss_dist = derive2 { name="gamlss.dist"; version="5.0-6"; sha256="0xz0968diww9h2z2wgq2h5bgxx3h8nsv0yy4kapcay4ds1nkfyzx"; depends=[MASS]; }; + gamlss_dist = derive2 { name="gamlss.dist"; version="5.1-0"; sha256="0cfp7l1sw4q1n0f5zvb3gzp5q94w3f2ylvvi1fgdlyzbrjmf5fdc"; depends=[MASS]; }; gamlss_mx = derive2 { name="gamlss.mx"; version="4.3-5"; sha256="1jfs3ib2imwgazf8v23fa12iaflv0pm944bkqklx8qcljxp1lcs7"; depends=[gamlss gamlss_dist nnet]; }; gamlss_nl = derive2 { name="gamlss.nl"; version="4.1-0"; sha256="083l5lsb0csxcp4vffvdv2nr7jk3s2gkcavx66m8inzw16j7xilz"; depends=[gamlss survival]; }; gamlss_spatial = derive2 { name="gamlss.spatial"; version="2.0.0"; sha256="1pgmlc6i7p5mjb1pc7b861yjl2gwr37bbzj3j2dl0qzybrs742mx"; depends=[gamlss gamlss_add gamlss_dist mgcv spam]; }; - gamlss_tr = derive2 { name="gamlss.tr"; version="5.0-0"; sha256="02akydpvwl1qkhxpr72lv9qp4z2ra69abyq51b57rh4p60g78vhm"; depends=[gamlss gamlss_dist]; }; + gamlss_tr = derive2 { name="gamlss.tr"; version="5.1-0"; sha256="1px9lhwad13s544g4ba8m7nxxd425jyakh6x1p4byxl8bn9w9qgr"; depends=[gamlss gamlss_dist]; }; gamlss_util = derive2 { name="gamlss.util"; version="4.3-4"; sha256="0p8lnwrn7cx97qnxls1x532f3ywszdyib2qiwx5qc7sam59h9c8j"; depends=[gamlss gamlss_dist zoo]; }; gamlssbssn = derive2 { name="gamlssbssn"; version="0.1.0"; sha256="1l8d4qwmq9dklm9imb3cvlncwa6jygf8kg2j1599h1nfhyyhj2vv"; depends=[gamlss gamlss_dist MASS]; }; gamm4 = derive2 { name="gamm4"; version="0.2-5"; sha256="11wblnh22xq3m3z25i30v2kd0zlf8wa3cm5z38z56rhk3l2wf5bc"; depends=[lme4 Matrix mgcv]; }; @@ -6741,10 +7039,11 @@ in with self; { gapfill = derive2 { name="gapfill"; version="0.9.6"; sha256="0384v7capab7dbyvz6b2jvnh840z6ab3857my0h3cgsys3lhn3c5"; depends=[fields foreach ggplot2 quantreg Rcpp]; }; gapmap = derive2 { name="gapmap"; version="0.0.4"; sha256="0xz19n0vvdzbfg6afp3y0qfbs3f2nfxib1cyya3cax5wqqfbzw3i"; depends=[ggplot2 reshape2]; }; gapminder = derive2 { name="gapminder"; version="0.3.0"; sha256="067cra1ca4ngwjx8d1y9pyzwcpsfi1wcal0glzyy6ghd1k6jflpv"; depends=[tibble]; }; + garray = derive2 { name="garray"; version="1.0.2"; sha256="07z5rdzk3bg4w31pdaarb0lmq26caqrn7mj396rmxrfq1l3l0bfm"; depends=[]; }; gaselect = derive2 { name="gaselect"; version="1.0.5"; sha256="0xzx00n46x6x7w1xbx8nvabkkrna45pv1i70787m8h05q1yrjjij"; depends=[Rcpp RcppArmadillo]; }; - gasfluxes = derive2 { name="gasfluxes"; version="0.2-1"; sha256="0cdqyyqb5dcn5978jmwmf06d9jcga5ma72zf3cdz72hbcil4f93k"; depends=[AICcmodavg data_table MASS sfsmisc]; }; + gasfluxes = derive2 { name="gasfluxes"; version="0.4"; sha256="1shjyksnqq2sjv8k2qidx9k1s6clh3lfvffdwxqbm3lp7wqzlmg6"; depends=[AICcmodavg data_table MASS sfsmisc]; }; gastempt = derive2 { name="gastempt"; version="0.4.01"; sha256="0jfk82yw7a95ih1s8ir432j79ix8vjbprwzr5fkzgykk07lfwm68"; depends=[assertthat BH dplyr ggplot2 nlme Rcpp RcppEigen rstan shiny StanHeaders stringr tibble]; }; - gaston = derive2 { name="gaston"; version="1.5.3"; sha256="0y49rgsnzbikm1162awxlamjc2djnxqd9j8if9si4gbmkkp90iwm"; depends=[Rcpp RcppEigen RcppParallel]; }; + gaston = derive2 { name="gaston"; version="1.5.4"; sha256="1yjl100z6cakpfd1gqryigpclyslygzvhps7w6gyrp85yipj5i0r"; depends=[Rcpp RcppEigen RcppParallel]; }; gatepoints = derive2 { name="gatepoints"; version="0.1.3"; sha256="02qxxf4a6rl3l0jdgqxmzxfnqd9lh5i0q2knaxxsiz0nd74c1jg5"; depends=[]; }; gaussDiff = derive2 { name="gaussDiff"; version="1.1"; sha256="0fqjdxp2ibbami75ba16d02dz4rz5sk8mni45di9anydx44g9d45"; depends=[]; }; gaussfacts = derive2 { name="gaussfacts"; version="0.0.2"; sha256="095x7k7m7sy1gqkbm6wiqn26252dclz62sbnkv6cjvmbdxajl7m9"; depends=[]; }; @@ -6752,14 +7051,15 @@ in with self; { gazepath = derive2 { name="gazepath"; version="1.2"; sha256="0h5a9bpgx268yh0zy3y4xfvij1ncx92x5qphjc94xmzbrl0br1mf"; depends=[jpeg scales SDMTools shiny zoo]; }; gb = derive2 { name="gb"; version="2.3.3"; sha256="0gkdkbwr168vi7lgccla49l43rkmjcfrwlqdr65mg5syzcxrh7nh"; depends=[boot KernSmooth]; }; gbRd = derive2 { name="gbRd"; version="0.4-11"; sha256="06x97rw5i6v6cgjxkfhxnw4dn7lghn5q6ra7ri5ag1x9dkfzcl82"; depends=[]; }; - gbfs = derive2 { name="gbfs"; version="1.0.0"; sha256="1kikbsdmh8v2s3kabmfpbwzzwxkzadqz7xpn5ng90npl3j8zaps6"; depends=[devtools dplyr jsonlite lubridate readr roxygen2 stringr testthat withr]; }; - gbm = derive2 { name="gbm"; version="2.1.3"; sha256="0ayrpq5qm18dsain088mbw0037bijxcy342grb6g2qnp67llpwpa"; depends=[lattice survival]; }; + gbfs = derive2 { name="gbfs"; version="1.1.0"; sha256="1c68p384fh53vi73xjk6kg51q62w49r74d1miyhxg5w56bwyw9n4"; depends=[dplyr jsonlite lubridate readr stringr]; }; + gbm = derive2 { name="gbm"; version="2.1.4"; sha256="0lp11s911y2xf9wn9288jl80qqc9wh2jrk49lxsjm94lbws51zli"; depends=[gridExtra lattice survival]; }; gbm2sas = derive2 { name="gbm2sas"; version="2.1"; sha256="0ssjlv849vssmncn01ccpp2myqib5f3g88g0d4rqma2z0ivdpk23"; depends=[gbm]; }; gbp = derive2 { name="gbp"; version="0.1.0.4"; sha256="0awg724gsfwlb0fjcvw0450qdsk4m8x8is16pj5c8fx6nc8rn8bv"; depends=[data_table magrittr Rcpp RcppArmadillo rgl]; }; gbs2ploidy = derive2 { name="gbs2ploidy"; version="1.0"; sha256="0gdjfqs9ccyaw7vi22wbyc742n1badr5ypr08g6rvi8ka5lmx836"; depends=[MASS rjags]; }; gbts = derive2 { name="gbts"; version="1.2.0"; sha256="1v8x4dnja8va28rjznyqa6js9wazndijasb95lfj2qwhxhgf5h65"; depends=[doParallel doRNG earth foreach gbm]; }; - gbutils = derive2 { name="gbutils"; version="0.2-1"; sha256="0br5b1l5dwq65v6d85mki6fpcz4y819ji7w5pgfl3h312q5s627v"; depends=[]; }; - gcKrig = derive2 { name="gcKrig"; version="1.1.1"; sha256="0bfxwi3ahhgyn1mh00b27iwz3cgabz74r00q4bhl45wjps4vngc3"; depends=[Rcpp RcppArmadillo]; }; + gbutils = derive2 { name="gbutils"; version="0.4-0"; sha256="01ka10k599c8q7l55jzkrvqlxhzdanc4xnmsh6js5ji5yr7v385f"; depends=[Rdpack]; }; + gcForest = derive2 { name="gcForest"; version="0.2.7"; sha256="10fjha76sgnrkhwjm0rm4hrbn0643p9dsyb5ahw43x8m5kmw2ydq"; depends=[cli crayon pkgdown reticulate]; }; + gcKrig = derive2 { name="gcKrig"; version="1.1.2"; sha256="1wqmw56805bny8w6zdj5zn4c89p3x39d5pkp4xslpd5f623zvf6x"; depends=[Rcpp RcppArmadillo]; }; gcbd = derive2 { name="gcbd"; version="0.2.6"; sha256="1dvnly0aljv2c4x7sn3q55ncvfdfjfgp7w0k2900p77h4w8nixia"; depends=[DBI lattice Matrix plyr reshape RSQLite]; }; gcdnet = derive2 { name="gcdnet"; version="1.0.5"; sha256="159dl8v1n7s9wnfrjb6f0b3ssblkqgbfzs15vjxhc8xkz0jp9z1c"; depends=[Matrix]; }; gcerisk = derive2 { name="gcerisk"; version="18.02.22"; sha256="1wy9l4s17ji5xj1cxjnb59qz3242yjs4zp76fy3rg1m0k7ib52vg"; depends=[cmprsk ggplot2 survival]; }; @@ -6774,7 +7074,7 @@ in with self; { gdistance = derive2 { name="gdistance"; version="1.2-2"; sha256="0lqpxsg01ibkaq50qyccdhsl2sbb4kh9bcfifs1yzsg45bq27jf8"; depends=[igraph Matrix raster sp]; }; gdm = derive2 { name="gdm"; version="1.3.11"; sha256="1bsy8fjzc0034hxw5n4ip4lkwr38fiyvw9q21bk17sxn44cnnxz4"; depends=[doParallel foreach raster Rcpp reshape2 vegan]; }; gdmp = derive2 { name="gdmp"; version="0.1.0"; sha256="1dlzxf17ssm10pw14mk5lk0plgav2mj8xf39dacyg9hlrz9pjwki"; depends=[]; }; - gdns = derive2 { name="gdns"; version="0.2.1"; sha256="0dvrknhx0d00yi429zjdcs3ghgbpfjhrclkn6cicd049qdp4q396"; depends=[dplyr httr jsonlite purrr stringi tibble]; }; + gdns = derive2 { name="gdns"; version="0.3.1"; sha256="1vydl7jacldidzx1hhqang9fw8zar8wy4cgdmr9pbw22ffw2qq7s"; depends=[httr jsonlite stringi]; }; gdpc = derive2 { name="gdpc"; version="1.1.0"; sha256="1q1c9pypkb8dv6bvgizaca4p43krc52fvlvjz9l6nkpazr1qx33d"; depends=[doParallel foreach Rcpp RcppArmadillo xts zoo]; }; gds = derive2 { name="gds"; version="0.1.0"; sha256="0kc3l93640x8d6g3pa9gbr7ci5hmryg9i1nqpasgnvb6ixv6azbm"; depends=[]; }; gdtools = derive2 { name="gdtools"; version="0.1.7"; sha256="122k9spymawfnfyksxyapwq9cigydy5nrjwhrwrhy3qkax3aycf6"; depends=[Rcpp withr]; }; @@ -6785,15 +7085,15 @@ in with self; { geecure = derive2 { name="geecure"; version="1.0-6"; sha256="0nmnrkfgblv38qvk66bdk8933icr59mayqwljkvmpy59sm6br2k5"; depends=[geepack MASS Matrix survival]; }; geepack = derive2 { name="geepack"; version="1.2-1"; sha256="13fkz38rsdk1byv6rdpdmphz5dd31r4h8ms49hali6hjh5rydzvy"; depends=[]; }; geesmv = derive2 { name="geesmv"; version="1.3"; sha256="0gm953z8q5cc1adl3d6vj5djg2inc880zfcdl5gd56fnb5gl6h1w"; depends=[gee MASS matrixcalc nlme]; }; - geex = derive2 { name="geex"; version="1.0.3"; sha256="0px197mz3qfx7s4wfdjlgjpss03y7wid1qa34xf4xan05dnrrnzc"; depends=[lme4 Matrix numDeriv rootSolve]; }; + geex = derive2 { name="geex"; version="1.0.11"; sha256="19qqgr16cd4zsmfgl9ny92ncvf1418ilvhb9h3axw24mkycins61"; depends=[lme4 Matrix numDeriv rootSolve]; }; geigen = derive2 { name="geigen"; version="2.2"; sha256="0wfd87xd438ri0a9m9dz46jfy4wpm75skc3iyppx80d03kijvcig"; depends=[]; }; geiger = derive2 { name="geiger"; version="2.0.6"; sha256="1zry3iclj7yciiiysbq6z0kn759c7hdy5fq0dcszkskqcd92qfz1"; depends=[ape coda colorspace deSolve digest MASS mvtnorm ncbit Rcpp subplex]; }; gelnet = derive2 { name="gelnet"; version="1.2.1"; sha256="10ygdfz9f5xhahlqb2divwvaljhiz8jhsd12wvq0qalx0v1h5j0p"; depends=[]; }; gem = derive2 { name="gem"; version="0.19"; sha256="11gzqpc9s1bkx1w6ncjylmfqqf3wj5hgca4lzygvlni9xz7pk517"; depends=[signal]; }; - gemlog = derive2 { name="gemlog"; version="0.26"; sha256="1cbm9rd2zwih5glj5nkmavb27j21dhsrrrr1d0ss6faf00nprbfq"; depends=[signal]; }; + gemlog = derive2 { name="gemlog"; version="0.30"; sha256="1cznlgl0gwqih63w6vfxj1ln7qfsa60c5l3wx9pri0ngcx75p9rn"; depends=[signal]; }; gems = derive2 { name="gems"; version="1.1.1"; sha256="174mjnpldb0rwjvwdgpcg1acm526gs0pjf9gi5mn9d3x9yz4r5jx"; depends=[data_table MASS msm plyr]; }; gemtc = derive2 { name="gemtc"; version="0.8-2"; sha256="0c2a9gz6rvsc5qh66ixxa4dz6lwhcmmsf2vnvxl98c9kbvdwfqm9"; depends=[coda igraph meta plyr Rglpk rjags truncnorm]; }; - genBaRcode = derive2 { name="genBaRcode"; version="1.0.0"; sha256="0313kyhy9bg9rabxk2jdgxq2brhj2kkiq0xyd3mlq6j9c626pqi8"; depends=[ape Biostrings ggnetwork ggplot2 igraph network phangorn RColorBrewer reshape2 S4Vectors shiny ShortRead stringdist visNetwork]; }; + genBaRcode = derive2 { name="genBaRcode"; version="1.1.0"; sha256="1x7hf80bqfl6ghd9vk878a86dacphp15wdw9zb198ax083q3jydm"; depends=[ape Biostrings doParallel dplyr foreach futile_logger ggnetwork ggplot2 ggseqlogo ggtree igraph network phangorn RColorBrewer reshape2 S4Vectors shiny ShortRead stringdist VennDiagram visNetwork]; }; genBart = derive2 { name="genBart"; version="1.0.1"; sha256="12z5vj41npwawz954zqkjfmg9inh063ilh7m82pn73asrxif0ay3"; depends=[clValid data_table fastcluster ggplot2 gtools limma NMF pca3d psych qusage RColorBrewer reshape2 rmarkdown scales shiny shinydashboard shinyjs statmod stringr VennDiagram]; }; genMOSS = derive2 { name="genMOSS"; version="1.2"; sha256="18qinckzz7wsw222skrq30izbj6s85i8hq6iicj9nng8gh6jydr8"; depends=[ROCR]; }; genMOSSplus = derive2 { name="genMOSSplus"; version="1.0"; sha256="1n3ngx1piy3l14k5k95wrgvrjw9238jkygfqanl3xg2na2mmkr26"; depends=[]; }; @@ -6812,9 +7112,10 @@ in with self; { genemodel = derive2 { name="genemodel"; version="1.1.0"; sha256="1x6n6k9ifv2swhyrghvm6fsz5vh85cdik8225175i9msvmkh928n"; depends=[stringr]; }; genepi = derive2 { name="genepi"; version="1.0.1"; sha256="1whhdlq9p8gmygv7464hvfz6dhm65gqq1dqls6hgpmw822zxgbd5"; depends=[]; }; genepop = derive2 { name="genepop"; version="1.0.5"; sha256="17s3azcq1fjjqi5n8rw071k1as4nnwvppmdaz2l5scn0wv120vcq"; depends=[Rcpp]; }; - generalCorr = derive2 { name="generalCorr"; version="1.1.1"; sha256="1ihp9pksi47f3fsv7wgrp1z4ylmf5n57n6h27v130mi7k5lh1gdy"; depends=[meboot np psych xtable]; }; - generalhoslem = derive2 { name="generalhoslem"; version="1.3.2"; sha256="1c6mmgdxdm384fl9yqpij3fvjzzima10knljsf50hl4q9f66lvag"; depends=[MASS reshape]; }; + generalCorr = derive2 { name="generalCorr"; version="1.1.2"; sha256="19kr8gs41lxfn2k6azz3200p3c98fhq63skx9ga3glas8cmxph0i"; depends=[meboot np psych xtable]; }; + generalhoslem = derive2 { name="generalhoslem"; version="1.3.3"; sha256="1pg8ff2c061rx1b698v2kva16rzydqrn935vb1pwbr63h8lgkv7x"; depends=[MASS reshape]; }; generator = derive2 { name="generator"; version="0.1.0"; sha256="0xjvnmnpdms8rrxxcz6pd8w4rnbv3ghzqv4m63zxia2l98x7z4rf"; depends=[]; }; + generics = derive2 { name="generics"; version="0.0.1"; sha256="02y0d6iafrw70mxdgg99cb720dlfqdr4mhpda0frp8315257c69f"; depends=[]; }; genesysr = derive2 { name="genesysr"; version="0.9.1"; sha256="0cwx00bikhr32h2mxnd9v5z80zjy3y9i7b30achhlrjzvylh6q4j"; depends=[httr jsonlite]; }; genetics = derive2 { name="genetics"; version="1.3.8.1"; sha256="0gfbrpz0zp5bgw3s21wrhjfy70laif47wcrjrm6mjgs6xapiw790"; depends=[combinat gdata gtools MASS mvtnorm]; }; genie = derive2 { name="genie"; version="1.0.4"; sha256="0ymrn42ik0rfildmyq4z0gsd7injda0dsjgx69nqb6hq0x8s5hqa"; depends=[Rcpp]; }; @@ -6835,41 +7136,42 @@ in with self; { geoBayes = derive2 { name="geoBayes"; version="0.5.1"; sha256="18m1qxzq97rddbxk99za5yfdcq6nyy4nxgikylfpsb2mxanjxyx2"; depends=[coda sp]; }; geoCount = derive2 { name="geoCount"; version="1.150120"; sha256="1kcjqls91r6p8ykn901c5p3v2lzbyainahhjpnr5c3a57v8s73ms"; depends=[Rcpp RcppArmadillo]; }; geoGAM = derive2 { name="geoGAM"; version="0.1-2"; sha256="0q09pk2npn4hjymklwfrhz2ybmjpcb6kvqkpn9l3a6cdjgk6bkmj"; depends=[grpreg MASS mboost mgcv]; }; - geoR = derive2 { name="geoR"; version="1.7-5.2"; sha256="1sy968x154bsc3i3a6mxcwnyixcnmab5bc07dgibi9vzn0nkbbpb"; depends=[MASS RandomFields sp splancs]; }; + geoR = derive2 { name="geoR"; version="1.7-5.2.1"; sha256="1fb3xm85i36q9l5lspa6fjfa82mv8fnwl30rimrlamss02ff959q"; depends=[MASS RandomFields sp splancs]; }; geoRglm = derive2 { name="geoRglm"; version="0.9-11"; sha256="0qf3nm0snrmplbwgcac0iinni7h2wqm13lm34zzfl00idzv0k9b9"; depends=[geoR sp]; }; geoSpectral = derive2 { name="geoSpectral"; version="0.17.4"; sha256="0i2k5k66gmf7zvipcd0a489rnpj14j4a4xw9k5dccpj6ybwd47l7"; depends=[dplyr leaflet maps plotly rbokeh rgdal sp spacetime xts]; }; geoaxe = derive2 { name="geoaxe"; version="0.1.0"; sha256="043y7kb24hp66j7pnpqsdixvdmppwp72y8i4f8q7xrkhaqlfb93v"; depends=[jsonlite rgeos sp]; }; - geoelectrics = derive2 { name="geoelectrics"; version="0.1.5"; sha256="0zy9m5k4b359mn29cd62cnwjm4fc19hy3l8p587yrrhsi20nbyna"; depends=[fields lattice rgl]; }; + geodetector = derive2 { name="geodetector"; version="1.0-3"; sha256="1x6mr05976vdxxgcb4fd3v7mq2lanrl44nqz6f6rk2dy3yhdqi5c"; depends=[maptools rgdal rgeos sp]; }; + geodist = derive2 { name="geodist"; version="0.0.1"; sha256="15x0p34qcac8v2ldf7hs4h28z44hvjqqidf5g0x2k6rz7692aqpd"; depends=[]; }; + geoelectrics = derive2 { name="geoelectrics"; version="0.2.0"; sha256="1dmpaf16750ni4yr36cglfz9pv9jax8jxb3kwn47kxgnx3l8qq98"; depends=[fields lattice rgl]; }; geofacet = derive2 { name="geofacet"; version="0.1.9"; sha256="0z9xd24hn9j8azd4kal81lz72zy6vv9rvwx1jsmkq7z7f1wwly48"; depends=[geogrid ggplot2 ggrepel gridExtra gtable imguR rnaturalearth sp]; }; geofd = derive2 { name="geofd"; version="1.0"; sha256="16312g9mgw52mpsfky1j20zcqkkv91ihl0xhvv1bl80diffzf0zi"; depends=[fda geoR]; }; - geogrid = derive2 { name="geogrid"; version="0.1.0"; sha256="1aiar70cy8rf7hc7kwc2g3p02x3zmp6nf9vfjjrjm94mb7yr8s48"; depends=[Rcpp RcppArmadillo rgeos sf sp]; }; - geohash = derive2 { name="geohash"; version="0.3.0"; sha256="1yabnf0a6jd4r6zh83sxb9wcn4vs8csp7c80qs6pi1nx016lirx7"; depends=[Rcpp]; }; + geogrid = derive2 { name="geogrid"; version="0.1.0.1"; sha256="1skklrv2k0a0wi86q5d5mn7ma028ggl1pby7gpl3jssh7bgxw8wp"; depends=[Rcpp RcppArmadillo rgeos sf sp]; }; geojson = derive2 { name="geojson"; version="0.2.0"; sha256="1xvbkdaaf55x015pflvcdy06ayrmhqi3my0sdqb48z129rdbr3i7"; depends=[jqr jsonlite lazyeval magrittr protolite sp]; }; - geojsonR = derive2 { name="geojsonR"; version="1.0.4"; sha256="0248lb1kgj43czp5z4q7dcrq6ra0jhq62q9x79mgyb83bqn940h8"; depends=[R6 Rcpp RcppArmadillo]; }; + geojsonR = derive2 { name="geojsonR"; version="1.0.6"; sha256="17zcrkazcnn1507m5cpphzp14m40w1wzrhrb77rl5hn1jrxqvhh5"; depends=[R6 Rcpp RcppArmadillo]; }; geojsonio = derive2 { name="geojsonio"; version="0.6.0"; sha256="10vi40ppy65yg655xy0j8zl6icn7d7icwfj4a84wpp28pd1bwic8"; depends=[geojson httr jqr jsonlite magrittr maptools readr rgdal rgeos sf sp V8]; }; geojsonlint = derive2 { name="geojsonlint"; version="0.2.0"; sha256="05j7059s1hs8i2fkmkv0mqmda3bgk5zbyi865ab0vl361wiwmdya"; depends=[httr jsonlite jsonvalidate V8]; }; - geojsonsf = derive2 { name="geojsonsf"; version="1.1"; sha256="050dcyhsjjysfp263g1f35aixrdh85zfzkg7dyhn47nr9cfgrss8"; depends=[curl rapidjsonr Rcpp]; }; - geoknife = derive2 { name="geoknife"; version="1.5.5"; sha256="0azb98zk4ayfm0z9vz5h59490xvng16p3gpdn60ca9mwdikyxks3"; depends=[curl httr sp XML]; }; + geojsonsf = derive2 { name="geojsonsf"; version="1.2"; sha256="08db4rx9m8q2cz2vzp48421r2whb7bwlls35l893zfqni9yhib89"; depends=[curl jsonify rapidjsonr Rcpp]; }; + geoknife = derive2 { name="geoknife"; version="1.6.1"; sha256="128y2m9aggcrfz2ynw2rzbq76rp61db1glzwhhc3n4rh25j974ic"; depends=[curl httr progress sp whisker xml2]; }; geomapdata = derive2 { name="geomapdata"; version="1.0-4"; sha256="1g89msnav87kim32xxbayqcx1v4439x4fsmc8xhlvq4jwlhd5xxw"; depends=[]; }; geomedb = derive2 { name="geomedb"; version="0.2"; sha256="1nsf7xzqayk8zbw3b6xpgiqk2w2kzc896gjswzxq128xw05cia0a"; depends=[ape httr]; }; - geomerge = derive2 { name="geomerge"; version="0.3.0"; sha256="12r60rxsi6x30q8h7mx0m50avvssm493qzyxiva7nglydcmhjn9r"; depends=[geosphere ggplot2 gridExtra inlmisc lubridate raster scales sp spdep]; }; - geometa = derive2 { name="geometa"; version="0.2-0"; sha256="1dz23jgix8sxnb69hb7jd41kdqifkf95jmcg2f6zqncqa6qg7glk"; depends=[R6 XML]; }; + geomerge = derive2 { name="geomerge"; version="0.3.1"; sha256="0pvyhpv4vq8mvvlybxhviq8rbazw29dgf9m0xnldaxg9r6lqdp4d"; depends=[geosphere ggplot2 gridExtra inlmisc lubridate raster scales sp spdep]; }; + geometa = derive2 { name="geometa"; version="0.3-0"; sha256="0cw29a4zsqvqyj4zmvk92752k65yhxxjqmqp0kl0pnidl18vbp46"; depends=[R6 XML]; }; geometry = derive2 { name="geometry"; version="0.3-6"; sha256="0s09vi0rr0smys3an83mz6fk41bplxyz4myrbiinf4qpk6n33qib"; depends=[magic]; }; geomnet = derive2 { name="geomnet"; version="0.2.0"; sha256="0xanzx8p34bac4zcf9j69nivwhllvsrw7x70mzgl95jhg3gvv96a"; depends=[dplyr ggplot2 network plotly readr sna tidyr]; }; - geomorph = derive2 { name="geomorph"; version="3.0.6"; sha256="1iqz8qzcdrxvz1iywkzbwia40sxj7fkw3mcncdddb9dnq016cfdy"; depends=[ape geiger jpeg Matrix rgl]; }; + geomorph = derive2 { name="geomorph"; version="3.0.7"; sha256="1q9qdpb08kfs1xs5s9xjxh98wb3hqilqynwzihlz1hsv38p99y38"; depends=[ape geiger jpeg Matrix rgl RRPP]; }; geonames = derive2 { name="geonames"; version="0.998"; sha256="1p0x260i383ddr2fwv54pxpqz9vy6vdr0lrn1xj7178vxic1dwyy"; depends=[rjson]; }; - geonapi = derive2 { name="geonapi"; version="0.1-0"; sha256="1i0pr4zrl06ym947parxk083f1b5p58bdbpm842viq1qqwavfj6z"; depends=[geometa httr openssl R6 XML]; }; + geonapi = derive2 { name="geonapi"; version="0.2-0"; sha256="1d3dxmnxdmdbz4kfg87mrk6ddachgb0fqvmhpscfzagwfhcs19zw"; depends=[geometa httr openssl R6 XML]; }; geoops = derive2 { name="geoops"; version="0.2.0"; sha256="0n9n0j849jbqv6y6lqhyhddr5zfz8i9yi03gpg9862nzkvxd3c4k"; depends=[Rcpp]; }; geoparser = derive2 { name="geoparser"; version="0.1.1"; sha256="0rk2wcig79r28a974bc181p8vypxzbgxcb9rsp24qj9mg02rn5n5"; depends=[digest dplyr httr jsonlite lazyeval purrr stringr tidyr]; }; geophys = derive2 { name="geophys"; version="1.4-1"; sha256="1s64sbr0chv0z2vaw059khfkv8iga1kr6428kkglgafq5x2d6h3q"; depends=[cluster GEOmap RFOC RPMG RSEIS]; }; - georob = derive2 { name="georob"; version="0.3-6"; sha256="01gq9ymqk3zyjs5n7nj27ky2bnhc7x7npbipa5bcq7jda6gxirhr"; depends=[abind constrainedKriging fields lmtest nleqslv nlme quantreg RandomFields robustbase snowfall sp]; }; - geosapi = derive2 { name="geosapi"; version="0.2-0"; sha256="15w2rd0scv0aywngp2h7nzbgh4ddbgnf54scd454ixgv67m99p5f"; depends=[httr openssl R6 XML]; }; + georob = derive2 { name="georob"; version="0.3-7"; sha256="1bs54qmj9qwh0pxllmsvc6camw8mk44538yhm164xbm9l344s1vz"; depends=[abind constrainedKriging fields lmtest nleqslv nlme quantreg RandomFields robustbase snowfall sp]; }; + geosapi = derive2 { name="geosapi"; version="0.3-0"; sha256="0yl2iaynhx0zgfcfkqp9hbyjh27fzhyra7q30ks9v48s0rhjv1mx"; depends=[httr openssl R6 XML]; }; geoscale = derive2 { name="geoscale"; version="2.0"; sha256="0gisds0in32xhw54fxfyxvwxgrfjs871wmqf6l915nr896rlx0bm"; depends=[]; }; geospacom = derive2 { name="geospacom"; version="0.5-8"; sha256="14qyjbq0n43c2zr9gp11gdqgarvmicx3gpq2ql2vjfzrmirxwjgg"; depends=[classInt geosphere maptools rgeos sp]; }; geosphere = derive2 { name="geosphere"; version="1.5-7"; sha256="186qdm5niq7v3d4w4rngx71znsgi44hnam7698bsx9ar5mg5b6wx"; depends=[sp]; }; geospt = derive2 { name="geospt"; version="1.0-2"; sha256="1814nn0naxvbn0bqfndpmizjbqcs6rm87g2s378axkn6qpii4bh8"; depends=[fields genalg gsl gstat limSolve MASS minqa plyr sgeostat sp TeachingDemos]; }; geosptdb = derive2 { name="geosptdb"; version="0.5-0"; sha256="0m0dlazhq2za71mi3q8mz2zvz7yrmda7lha02kh9n820bx89v33z"; depends=[FD fields geospt gsl limSolve minqa sp StatMatch]; }; - geostatsp = derive2 { name="geostatsp"; version="1.7.1"; sha256="141mvwkqk2jpyggmzvm604s37h92gbmzch3d84dq3ng29mc507s2"; depends=[abind Matrix numDeriv raster sp]; }; + geostatsp = derive2 { name="geostatsp"; version="1.7.2"; sha256="0g1yvdj0bgdpq4mhcyy5yvsb4azm982vknbyzrr2415szv1910kb"; depends=[abind Matrix numDeriv raster sp]; }; geotech = derive2 { name="geotech"; version="1.0"; sha256="18s7w6h1svc4n1hcgj5njfkf3nflkc53cdwsq5112p3442rlz33f"; depends=[]; }; geotools = derive2 { name="geotools"; version="0.1"; sha256="0d0vf9dvrrv68ivssp58qzaj8vra26ms33my097jmzmgagwy1spd"; depends=[]; }; geotoolsR = derive2 { name="geotoolsR"; version="1.0"; sha256="1arbyb1q96ya3smn9sqzqji5v21x37iyyxmvlmqmjj75an8ix5dp"; depends=[dplyr geoR ggplot2 tidyr]; }; @@ -6877,51 +7179,52 @@ in with self; { geozoning = derive2 { name="geozoning"; version="1.0.0"; sha256="0cqdi2jgqrxc339qkr57dp11jp40x99f9inwamnh7ymg2q7kq14s"; depends=[deldir fields ggplot2 gstat maptools RandomFields raster rgeos sp]; }; geozoo = derive2 { name="geozoo"; version="0.5.1"; sha256="0g91yhg7zw1bp0lxxblr2irckjg2rl4pg1vgglccnmxkzn0ji2qi"; depends=[bitops]; }; gepaf = derive2 { name="gepaf"; version="0.1.1"; sha256="0n36w40jrq3qkgmhz9wrnhp6fczw7bm96g950sa4nq33872xhfgm"; depends=[bitops]; }; - germinationmetrics = derive2 { name="germinationmetrics"; version="0.1.0"; sha256="1s6mygiwmz2cgg2dcsah4ssnj5hfilf7hfdzvv3qd57imicrlkk5"; depends=[broom ggplot2 ggrepel minpack_lm plyr Rdpack]; }; + germinationmetrics = derive2 { name="germinationmetrics"; version="0.1.1.1"; sha256="1za2vkprdl2hdpww3p4x5l1ddkcrq6jxj1chhbbq4w31blpvg5hm"; depends=[broom ggplot2 ggrepel minpack_lm plyr Rdpack]; }; gesca = derive2 { name="gesca"; version="1.0.4"; sha256="1ndn8wgp22pr017x6v7jw8jy4gd06x8110qa860hw8i6pn47wfwv"; depends=[]; }; gesis = derive2 { name="gesis"; version="0.2.1"; sha256="1cdmhfdjiwsp48a7b0r1mnagnymz606mkzpam9fsvfl72vzji2w7"; depends=[httr rvest xml2]; }; - gestalt = derive2 { name="gestalt"; version="0.1.1"; sha256="0gcvd61dyyq29gf2v3kg1y474diwi0hl28rb4w8zf11ac9lc0jvz"; depends=[rlang]; }; - getCRUCLdata = derive2 { name="getCRUCLdata"; version="0.2.4"; sha256="1468bxmy2iv1kzjnyh5y035lxmi8wfssjk0cjx63i6dg38bhq4cz"; depends=[data_table dplyr hoardr httr raster tibble tidyr]; }; + gestalt = derive2 { name="gestalt"; version="0.1.4"; sha256="1krmn19cxmbd4l0x5nzhypkr04dv7s82rnnk97szni4wdy2ih892"; depends=[rlang]; }; + getCRUCLdata = derive2 { name="getCRUCLdata"; version="0.2.5"; sha256="0wg1b92wmqccskkihq1qj4i1yrih4kb1c2b6wvl13bhz1p4xi7vn"; depends=[data_table dplyr hoardr httr raster tibble tidyr]; }; getMet = derive2 { name="getMet"; version="0.3.2"; sha256="0j1h1vy8rd7czpnb4msdb9k560pnh7kjkmpqqwzwin2ms1c0mggb"; depends=[EcoHydRology jsonlite]; }; getPass = derive2 { name="getPass"; version="0.2-2"; sha256="03ydafhh0sk3rcnpr3paajyji64x2ddp6p814p9mvbmyrblcgzcc"; depends=[rstudioapi]; }; - getTBinR = derive2 { name="getTBinR"; version="0.5.4"; sha256="1xf5b98j4b07namkhmzwmp1xhsn9g42p2zy38xhz4823x13q9yn6"; depends=[data_table dplyr ggplot2 ggthemes magrittr plotly purrr scales tibble tidyr viridis]; }; + getProxy = derive2 { name="getProxy"; version="1.12"; sha256="0qcxihgwy3h2b98z2hwjszwqbz117d89xjys7fy0f8m9hv7rf6ph"; depends=[bitops data_table dplyr httr jsonlite RCurl]; }; + getTBinR = derive2 { name="getTBinR"; version="0.5.5"; sha256="0plpymf74j4q76mp5pi6692zs3vz7r466pracphb49bpl3a3nvqp"; depends=[data_table dplyr ggplot2 ggthemes magrittr plotly purrr scales tibble tidyr viridis]; }; getlandsat = derive2 { name="getlandsat"; version="0.2.0"; sha256="15450v93lc4i2qda0zlb5vplwbarkmf3f6sb4rlrdpv9vlj85hff"; depends=[crul data_table rappdirs readr tibble xml2]; }; getmstatistic = derive2 { name="getmstatistic"; version="0.1.1"; sha256="14w0n658s624anvxv7sqcgy6vfaaxcc7fj4xi1k2qrxd9rdh6dza"; depends=[ggplot2 gridExtra gtable metafor psych stargazer]; }; getopt = derive2 { name="getopt"; version="1.20.2"; sha256="13p35lbpy7i578752fa71sbfvcsqw5qfa9p6kf8b5m3c5p9i4v1x"; depends=[]; }; - gets = derive2 { name="gets"; version="0.15"; sha256="1sz225bymjp2mrklpjagh6x622kpcvh21r0rmimd1mjhqbg0p9vs"; depends=[zoo]; }; + gets = derive2 { name="gets"; version="0.16"; sha256="0ipnf8jlirwvr9zjyw7dxmm8vqjznlw2k7iy56pm2hyc70ssyxw8"; depends=[zoo]; }; gettz = derive2 { name="gettz"; version="0.0.3"; sha256="1i06nfm824131q8lwwhrbzg2g9lbnmyp8k57w2vag7v8jj5rdrda"; depends=[]; }; gfcanalysis = derive2 { name="gfcanalysis"; version="1.4"; sha256="1hjgbiakf01mmaa2jhlnymcsjsj1zssay44p4sdxxxzpx4szs3vv"; depends=[animation geosphere ggplot2 plyr raster rasterVis RCurl rgdal rgeos sp stringr]; }; gfer = derive2 { name="gfer"; version="0.1.10"; sha256="1y0ra8k7zka43ibiii16vbwnc3m1i77yc9zj8rhzhmvhajjwad3l"; depends=[circlize data_table ggplot2 ggrepel googlesheets gsheet httr jsonlite rvest scatterpie stringi tidyr V8 xml2]; }; gfmR = derive2 { name="gfmR"; version="1.1-0"; sha256="0qzzbcra1fnbp0h31b1as20yhmqmi7p62xrhikj64an9avg9b277"; depends=[faraway nnet]; }; ggChernoff = derive2 { name="ggChernoff"; version="0.2.0"; sha256="09bh9isvx3hwwvg72fv6z3fvp8dimpbhvbp328z8amq8jjhph4vf"; depends=[ggplot2 scales]; }; ggExtra = derive2 { name="ggExtra"; version="0.8"; sha256="1m5zpn3l3p1y3d2692gyz50m63d58m2a3b7zb595kvcffdx2qr5b"; depends=[colourpicker ggplot2 gtable miniUI scales shiny shinyjs]; }; - ggFacetSample = derive2 { name="ggFacetSample"; version="1.0.0"; sha256="04h5j54wblrygiscvb6n40b9lz42ssds1yz9qs5hxppiph68k5zq"; depends=[ggplot2 plyr]; }; ggQC = derive2 { name="ggQC"; version="0.0.2"; sha256="1wi9hb5ihix2vfpzbhpq2clbs7c0qh84qbmdfcxw4lknb0ha9ai1"; depends=[dplyr ggplot2 tidyr]; }; ggQQunif = derive2 { name="ggQQunif"; version="0.1.5"; sha256="0vrxmqxy946mwdq0mb2m1ch41r0chrw7hcn18dr3mp10bv7pl7wj"; depends=[dplyr ggplot2 scales]; }; ggROC = derive2 { name="ggROC"; version="1.0"; sha256="0p9gdy7ia59d5m84z9flz5b03ri7nbigb3fav2v2wrml300d24vn"; depends=[ggplot2]; }; ggRandomForests = derive2 { name="ggRandomForests"; version="2.0.1"; sha256="0f8m0j79d8wbac14zk1s8812rz6vgf04bz1iqq8p4d3sxwnvaj7q"; depends=[ggplot2 randomForest randomForestSRC survival tidyr]; }; ggThemeAssist = derive2 { name="ggThemeAssist"; version="0.1.5"; sha256="1biw91a8p13h62v4w3yim6ghr98khmyhb3qd0h04asf91vvmpxbv"; depends=[formatR ggplot2 miniUI rstudioapi shiny]; }; + ggTimeSeries = derive2 { name="ggTimeSeries"; version="1.0.1"; sha256="12gi0zfl8g3x78skpkhska8b3z1pp636shrbx33rkq0iacsipqga"; depends=[data_table ggplot2]; }; ggallin = derive2 { name="ggallin"; version="0.1.1"; sha256="0hrxa7m07ppvnndivxcgxksdyblb6fw17aw46maqavlvcrz3fjgm"; depends=[ggplot2 scales]; }; - ggalluvial = derive2 { name="ggalluvial"; version="0.6.0"; sha256="1c7jigi5zph0slfk8z0has3irlm39xlpklzak6s04m2idwl7dcjz"; depends=[dplyr ggplot2 lazyeval rlang tidyr]; }; + ggalluvial = derive2 { name="ggalluvial"; version="0.9.1"; sha256="0np4dwhxz9q3p9y1w45fyvs4cphi50mbgi9wrinpi3k5i3anv6zf"; depends=[dplyr ggplot2 lazyeval rlang tidyr tidyselect]; }; ggalt = derive2 { name="ggalt"; version="0.4.0"; sha256="0ssa274d41vhd6crzjz7jqzbwgnjimxwxl23p2cx35aqs5wdfjpc"; depends=[ash dplyr extrafont ggplot2 gtable KernSmooth maps MASS plotly proj4 RColorBrewer scales tibble]; }; ggbeeswarm = derive2 { name="ggbeeswarm"; version="0.6.0"; sha256="0crk29p5vi1r3a988kms4y7r0iqwgwzsikgvh18r9wbzyr98bb5v"; depends=[beeswarm ggplot2 vipor]; }; ggbuildr = derive2 { name="ggbuildr"; version="0.1.0"; sha256="0pld635v6fv46ky7s4icwxlcnr7z6bp5ikf20adpkljwhy0wwxak"; depends=[ggplot2 purrr readr]; }; ggconf = derive2 { name="ggconf"; version="0.1.3"; sha256="0g4xasqhdiqfqahakv6p5npl56f2iakx4bnc9v9zcjr077kdda4n"; depends=[ggplot2 rly]; }; - ggcorrplot = derive2 { name="ggcorrplot"; version="0.1.1"; sha256="04jq1qpsgy8bgpilp1a02va4vz0adkjwrz9znmhv54q81qiv7h51"; depends=[ggplot2 reshape2]; }; + ggcorrplot = derive2 { name="ggcorrplot"; version="0.1.2"; sha256="12sxvd9kjgszpbk35m7fj1wv7x40bp79c0g0by1xax70r3495h93"; depends=[ggplot2 reshape2]; }; ggdag = derive2 { name="ggdag"; version="0.1.0"; sha256="0ja3v8pmlzl55n8y8n9zcg5n17w8w4vdq42bqf6h8hgyqj63rcg9"; depends=[dagitty dplyr forcats ggforce ggplot2 ggraph ggrepel igraph magrittr plyr purrr stringr tibble tidygraph]; }; ggdendro = derive2 { name="ggdendro"; version="0.1-20"; sha256="1zzq1hxd0d1qa5hrzwfkdw6fzscpcafbwbpkrb62dm559y8awp0j"; depends=[ggplot2 MASS]; }; ggdistribute = derive2 { name="ggdistribute"; version="1.0.2"; sha256="1cwm2fmpx5dvmg4jnydfp8d584dhhprb589p5ia9zf1fblc4jvvw"; depends=[data_table dplyr ggplot2 magrittr tibble]; }; - ggdmc = derive2 { name="ggdmc"; version="0.1.3.9"; sha256="07a9g6kwq4hg5zlcxndwmyprl3di7fzsn2960qyixn5bzrfk7sh2"; depends=[coda ggmcmc ggplot2 ggthemes gridExtra loo Rcpp RcppArmadillo rtdists]; }; + ggdmc = derive2 { name="ggdmc"; version="0.2.5.2"; sha256="0gswv1f1g24z34wza6fsnj1408yjvc2na1y3wnk2xi8ccqf6rj8g"; depends=[BH coda data_table ggmcmc ggplot2 matrixStats Rcpp RcppArmadillo rtdists tmvtnorm]; }; gge = derive2 { name="gge"; version="1.4"; sha256="0plwk5j2n0309ghgn8r4ws3azwn7n4jb7yfykiiwwalhs3k05lsa"; depends=[nipals reshape2 rgl]; }; ggedit = derive2 { name="ggedit"; version="0.3.0"; sha256="1v9apfkm47jcqyhjrvv8ig09gz6zsss5xj5mrckfjybd5ca08rzn"; depends=[colourpicker dplyr ggplot2 magrittr miniUI plyr purrr rlang rstudioapi scales shiny shinyAce shinyBS tidyr]; }; - ggeffects = derive2 { name="ggeffects"; version="0.4.0"; sha256="0w2w0vwbpcwm9nqvsr2ksyary8ah6ar5gw233sbc8m3z3zx33qc1"; depends=[dplyr effects ggplot2 magrittr prediction purrr rlang scales sjlabelled sjmisc sjstats tibble tidyr tidyselect]; }; + ggeffects = derive2 { name="ggeffects"; version="0.6.0"; sha256="00l02g7yssqxmcmbrzk2wsj3i9ywd0xsy0rmbfh57q1qi76a1wq1"; depends=[crayon dplyr ggplot2 lme4 magrittr MASS prediction purrr rlang scales sjlabelled sjmisc sjstats tidyr]; }; ggenealogy = derive2 { name="ggenealogy"; version="0.3.0"; sha256="169zkcp13g0ll9941a7hh31fll0mavnkb6fd3kvkibdjm621ymyh"; depends=[ggplot2 igraph plotly plyr reshape2 tibble]; }; - ggetho = derive2 { name="ggetho"; version="0.3.2"; sha256="1279y9mc4jvdpncy4xi80c2jbhkd1cv5k8hz5187dxq45ksan2bg"; depends=[behavr data_table ggplot2 labeling rlang scales stringr]; }; + ggetho = derive2 { name="ggetho"; version="0.3.4"; sha256="05wh0qk5cbcvcfgj5wf12qqbjgl1bbwcxywc16qdby7r4h5wy0gn"; depends=[behavr data_table ggplot2 labeling rlang scales stringr]; }; ggfan = derive2 { name="ggfan"; version="0.1.2"; sha256="0agk9r2g8gh5ixg25rix362c7hj8b255w3ff7iawinsndf0dmwpy"; depends=[colorspace dplyr ggplot2 rstan]; }; - ggfittext = derive2 { name="ggfittext"; version="0.5.0"; sha256="0ih6mqg53y5iaiq003wbzp6qqx4844yh5z9zw5d0k7gqclprmpn5"; depends=[ggplot2 stringi]; }; + ggfittext = derive2 { name="ggfittext"; version="0.6.0"; sha256="06zhzw7yw7i08pqb9an8gsbf7qmvf9la8s8k1zgril8jsqwf6sfl"; depends=[ggplot2 stringi]; }; ggfocus = derive2 { name="ggfocus"; version="0.8"; sha256="1gzx9hiaxni7d90wb9apqzw4rxc32gk5nrjxkgvwv52m999jh2wc"; depends=[dplyr ggplot2 magrittr RColorBrewer rlang]; }; - ggforce = derive2 { name="ggforce"; version="0.1.2"; sha256="1asz6mkgq47hp3c52dyqvzd8fyimid1by0jj263br0k0c572na9w"; depends=[dplyr ggplot2 gtable lazyeval MASS Rcpp scales tweenr units]; }; - ggformula = derive2 { name="ggformula"; version="0.8.0"; sha256="0rfkg5viznb98rd2xkq8mg8qvmxc8xm0jmiwwjfa3x2ngivgvwnw"; depends=[dplyr ggplot2 magrittr mosaicCore rlang stringr tibble]; }; + ggforce = derive2 { name="ggforce"; version="0.1.3"; sha256="0wydxmy6sfl84q94dd27m7cpg9iy6vgwzy3nr3m3cf3rfjk87sn4"; depends=[dplyr ggplot2 gtable lazyeval MASS Rcpp scales tweenr units]; }; + ggformula = derive2 { name="ggformula"; version="0.9.0"; sha256="1pmpdfjfbrc6kcpq70cr1kbj2qy711hw940g2aiis6l443z706kh"; depends=[ggplot2 ggstance magrittr mosaicCore rlang stringr tibble tidyr]; }; ggfortify = derive2 { name="ggfortify"; version="0.4.5"; sha256="1mqgikpg34czz0zj4q3yh4xq9iw2x9zkz00ss27r6pmi6zipb6rm"; depends=[dplyr ggplot2 gridExtra scales stringr tibble tidyr]; }; gggenes = derive2 { name="gggenes"; version="0.3.1"; sha256="14a3j4cjv6b4na4j1wasm3cc566armgqc81s1yy756xc9k9sp4a9"; depends=[ggfittext ggplot2 rlang]; }; ggghost = derive2 { name="ggghost"; version="0.2.1"; sha256="0kvsjadxxdf6yvzk4a6yqkg02q1ysslvf3m0a369bdim396z4hnv"; depends=[animation ggplot2]; }; @@ -6929,8 +7232,9 @@ in with self; { gghalfnorm = derive2 { name="gghalfnorm"; version="1.1.2"; sha256="1sy0m6pqmnjbqv60rljyblhis0dxwkhw751jhlad5arcgrcwf4k8"; depends=[ggplot2 ggrepel]; }; gghighlight = derive2 { name="gghighlight"; version="0.1.0"; sha256="1mfjvfm5xbih7k7qz6x8akbqgh0b18dz9pybfgh7rbq2ppwnhpy9"; depends=[dplyr ggplot2 ggrepel magrittr purrr rlang tibble]; }; ggimage = derive2 { name="ggimage"; version="0.1.7"; sha256="08xipid3n1ab2k2xs1ip3wgbdhw2ccsm49s62ygyqjp3z0cvbn2s"; depends=[ggplot2 ggplotify gridGraphics magick rvcheck scales tibble]; }; - ggiraph = derive2 { name="ggiraph"; version="0.4.3"; sha256="0mjzx4jhfjr1mb19cgl70g5hfznnshbf08hvlg6hhbavlsk8fclp"; depends=[ggplot2 htmltools htmlwidgets rvg xml2]; }; - ggiraphExtra = derive2 { name="ggiraphExtra"; version="0.1.0"; sha256="09fiwkaai4sy5kxy4p0c4ldb8ya63czff53hbm6d8fm858fw2byw"; depends=[ggiraph ggplot2 mapproj mgcv moonBook mycor plyr reshape2 scales XML]; }; + gginnards = derive2 { name="gginnards"; version="0.0.1"; sha256="1yn5qfzih4caba8ilb1pkxzrrxcb0gia4kan7ch2yqdgi1jxqyhq"; depends=[ggplot2 magrittr rlang stringr tibble]; }; + ggiraph = derive2 { name="ggiraph"; version="0.5.0"; sha256="0rwi2ch7jjgmf2lba40nd0mpfvwiqlx245hadsshn0km18rdn750"; depends=[ggplot2 htmltools htmlwidgets rvg xml2]; }; + ggiraphExtra = derive2 { name="ggiraphExtra"; version="0.2.9"; sha256="1qmw7z10h1x6xnlpq7shafg6w2bal8ni02c07fyy9f7hm02xfnzs"; depends=[dplyr ggforce ggiraph ggplot2 magrittr mgcv mycor plyr ppcor purrr RColorBrewer reshape2 scales sjlabelled sjmisc stringr tidyr webshot ztable]; }; ggjoy = derive2 { name="ggjoy"; version="0.4.1"; sha256="012md2m0jqfcccb933j423m3ck31v3p0pd41gjxpyg9082y7ixyj"; depends=[ggplot2 ggridges]; }; gglasso = derive2 { name="gglasso"; version="1.4"; sha256="0r4zfgkys8104iw1vzww3qid8a6dyn03x0jlgwrdvavfj86yhq54"; depends=[]; }; gglogo = derive2 { name="gglogo"; version="0.1.3"; sha256="1dq0bixz44p32kpma5wrqjqklal2ipjmqdwqap0xch542drlpqbn"; depends=[dplyr ggplot2 jpeg knitr magrittr plyr purrr reshape2]; }; @@ -6939,78 +7243,86 @@ in with self; { ggm = derive2 { name="ggm"; version="2.3"; sha256="1n4y459x2i0jil8chjjqqjs28a8pzfxrws2fcjkg3il7zy0zwbw3"; depends=[igraph]; }; ggmap = derive2 { name="ggmap"; version="2.6.1"; sha256="0mssb09w818jv58h7mly9y181pzv22sgcd4a079cfpq04bs0wigw"; depends=[digest geosphere ggplot2 jpeg mapproj plyr png proto reshape2 RgoogleMaps rjson scales]; }; ggmcmc = derive2 { name="ggmcmc"; version="1.1"; sha256="09b89cnmdmiwy18igzxjiq60l1xqjh022fw3rhd5kx7lnh02yza3"; depends=[dplyr GGally ggplot2 tidyr]; }; - ggmosaic = derive2 { name="ggmosaic"; version="0.1.2"; sha256="1mxa09914j9i8b14brl70a7j7ngycj8wkil3sqkd4jwplaszvhsn"; depends=[dplyr ggplot2 gridExtra NHANES plotly productplots purrr tidyr]; }; + ggmosaic = derive2 { name="ggmosaic"; version="0.2.0"; sha256="0byhp7125r015wbbnv6fq13bx38krf11r39jx9dzbr0ci6kqzkdb"; depends=[dplyr ggplot2 plotly productplots purrr rlang tidyr]; }; ggmuller = derive2 { name="ggmuller"; version="0.5.1"; sha256="1wa4gcyzbwy1s200w57phahh6rwaf62qn3i400xywkf34fsi1il8"; depends=[ape dplyr ggplot2]; }; ggnetwork = derive2 { name="ggnetwork"; version="0.5.1"; sha256="13qisn4msjzkpcmn7rh2c4ymqfxp9bayrvqngp9pysfmr6wvc6ia"; depends=[ggplot2 ggrepel network sna]; }; + ggpage = derive2 { name="ggpage"; version="0.2.2"; sha256="0azf19dhc8zawm7hgsf866j3s028ybcfpmpmna86ly6z8d4j09xf"; depends=[dplyr ggplot2 magrittr purrr rlang stringr tidytext]; }; ggparallel = derive2 { name="ggparallel"; version="0.2.0"; sha256="0zxaff0jbqkbavsmh1yyp3vdrxsam6a66hjw8lamv9pksdw1s2wf"; depends=[ggplot2 plyr reshape2]; }; - ggplot2 = derive2 { name="ggplot2"; version="3.0.0"; sha256="0kb977hizsvk3b1k3zr717q78bpmbabhl8cj9a3w717nkq1zas67"; depends=[digest gtable lazyeval MASS mgcv plyr reshape2 rlang scales tibble viridisLite withr]; }; + ggparliament = derive2 { name="ggparliament"; version="2.0.0"; sha256="04za4lm3lir95bgda1rzlsyil2fkac3j5f5f1pjw2samy6pjz80r"; depends=[dplyr ggplot2 rlang]; }; + ggperiodic = derive2 { name="ggperiodic"; version="0.1.0"; sha256="0fk4nns2rffv9q3904xq81spv5160l2ddzrhs8s96h041fxwgd0z"; depends=[dplyr ggplot2 sticky tidyselect]; }; + ggplot2 = derive2 { name="ggplot2"; version="3.1.0"; sha256="1msy36r21nlmnpyaw2m9k0ykmnd19b9il01b65w457pfw75prrs9"; depends=[digest gtable lazyeval MASS mgcv plyr reshape2 rlang scales tibble viridisLite withr]; }; ggplot2movies = derive2 { name="ggplot2movies"; version="0.0.1"; sha256="067ld6djxcpbliv70r2c1pp4z50rvwmn1xbvxfcqdi9s3k9a2v8q"; depends=[]; }; ggplotAssist = derive2 { name="ggplotAssist"; version="0.1.3"; sha256="1g0s1dkbrxmwqjqppagdbnx24s0nbjn09xwxix3dkfssz6drhala"; depends=[dplyr editData gcookbook ggplot2 ggthemes magrittr miniUI moonBook rstudioapi scales shiny shinyAce shinyWidgets stringr tibble tidyverse]; }; ggplotgui = derive2 { name="ggplotgui"; version="1.0.0"; sha256="1yfglg5438mwyml845isimzma5q6824x19jka509ng49bzmf1za0"; depends=[ggplot2 haven plotly RColorBrewer readr readxl shiny stringr]; }; - ggplotify = derive2 { name="ggplotify"; version="0.0.2"; sha256="00qkm0jlhxgihncrygmkahqq0dm6kiyfw00iyrfw0khrd4khpahb"; depends=[ggplot2 gridGraphics rvcheck]; }; - ggpmisc = derive2 { name="ggpmisc"; version="0.2.17"; sha256="1lx5a0n00994pp16jgz4c5xxsj8px6l9wl0cdsr0dr1d43lqywq1"; depends=[broom devtools dplyr ggplot2 gridExtra lubridate magrittr MASS plyr polynom rlang splus2R tibble xts zoo]; }; - ggpol = derive2 { name="ggpol"; version="0.0.2"; sha256="0viq6k5xswhb7dzzjwr59kc7lw6312x015lbx64y3vx71ncbrgkz"; depends=[dplyr ggplot2 gtable plyr rlang]; }; + ggplotify = derive2 { name="ggplotify"; version="0.0.3"; sha256="14hqlpvnaq5psz1ljcpw9isa06827rg3fm5c1dx159rsjfi56yby"; depends=[ggplot2 gridGraphics rvcheck]; }; + ggpmisc = derive2 { name="ggpmisc"; version="0.3.0"; sha256="1mmqz3qb9j77rlxlcrki21l0s4qr2h10bk810a40jxadiv2lqbcz"; depends=[broom dplyr ggplot2 gridExtra lubridate magrittr MASS plyr polynom rlang splus2R tibble xts zoo]; }; + ggpol = derive2 { name="ggpol"; version="0.0.4"; sha256="163rhms5hclp3hp2vwamvkmngv81rgg6w4l4hw10jrv5pcs3ybyy"; depends=[dplyr ggplot2 gtable plyr rlang]; }; ggpolypath = derive2 { name="ggpolypath"; version="0.1.0"; sha256="0g9zfal3vqcx16fi4abxm6l5sam475lk1f6bdik487wc2v0dkq83"; depends=[ggplot2]; }; - ggpubr = derive2 { name="ggpubr"; version="0.1.7"; sha256="110ny8p41kmbz0a5rl0mv9cqpjkx6yr3ybflp1r0fmcvhwv7cr3i"; depends=[cowplot dplyr ggplot2 ggrepel ggsci ggsignif gridExtra magrittr purrr scales tidyr]; }; - ggpval = derive2 { name="ggpval"; version="0.2.0"; sha256="1nwf3cz1258khp1barxxp28326bagvlsfhg4rcccbxcpny9vbl7d"; depends=[data_table ggplot2]; }; - ggquickeda = derive2 { name="ggquickeda"; version="0.1.0"; sha256="00j6gpika8x2yplnirj06vrc55aljcdhd2ln7081kym8xsfrjd2h"; depends=[colourpicker dplyr DT Formula ggplot2 ggrepel gridExtra Hmisc lazyeval markdown plotly quantreg rlang scales shiny shinyjs stringr survival tidyr]; }; + ggpubr = derive2 { name="ggpubr"; version="0.1.8"; sha256="0psl2zndm4wk6nnj1nv305islpxfvfgd87gjh2ph8yqn4mxpnfi1"; depends=[cowplot dplyr ggplot2 ggrepel ggsci ggsignif glue gridExtra magrittr polynom purrr scales tidyr]; }; + ggpval = derive2 { name="ggpval"; version="0.2.1"; sha256="1akhndl08nq97nvz2gzblfqsrjpxx1m632f3469mab9z1jcvaz57"; depends=[data_table ggplot2]; }; + ggquickeda = derive2 { name="ggquickeda"; version="0.1.1"; sha256="06jj9z6hd1v21r4bxsl3lshqabcc3sfqaj731j9pimrs63z0vsf8"; depends=[colourpicker dplyr DT Formula ggplot2 ggpmisc ggrepel gridExtra Hmisc lazyeval markdown plotly quantreg rlang scales shiny shinyjs stringr survival table1 tidyr]; }; ggquiver = derive2 { name="ggquiver"; version="0.1.0"; sha256="0p6li7cxjy54qrmaf9ja6aknnlxwq4sl0z1yip1mznb5rhv6lpxw"; depends=[dplyr ggplot2]; }; - ggraph = derive2 { name="ggraph"; version="1.0.1"; sha256="0sm1hf2fjfia0s8m5b1x6pi8wvww77rpck86clpa2figwvck8jqr"; depends=[digest dplyr ggforce ggplot2 ggrepel gtable igraph MASS plyr Rcpp scales viridis]; }; + ggraph = derive2 { name="ggraph"; version="1.0.2"; sha256="0fpmp326mryd1k1qvacjadksrnhbla8h960i18lmrimzrag7692c"; depends=[digest dplyr ggforce ggplot2 ggrepel gtable igraph MASS plyr Rcpp scales viridis]; }; ggraptR = derive2 { name="ggraptR"; version="1.1"; sha256="1lknd3vibysc00c6b59c0yq2r3dda7zn8bj7gxjzjv90jwpgl0b8"; depends=[dplyr ggplot2 pacman purrr shiny]; }; ggrasp = derive2 { name="ggrasp"; version="1.0"; sha256="0lini89mcxl30kx38vny9896hdf4afrz5dgivbbikkb2yyfh2cq1"; depends=[ape bgmm colorspace ggplot2 mixtools]; }; ggrepel = derive2 { name="ggrepel"; version="0.8.0"; sha256="1m3p84d6nh9mzzvxb82vgig3ngcvkz86rjwzl9a66ckdf5p611k3"; depends=[ggplot2 Rcpp scales]; }; - ggridges = derive2 { name="ggridges"; version="0.5.0"; sha256="1znvsbl3px8dddpjgdrygnpz4s685wizi0jnjvx2hrz58i0chjqj"; depends=[ggplot2 plyr scales withr]; }; + ggridges = derive2 { name="ggridges"; version="0.5.1"; sha256="0dhwcpy785ac2ny5bjp284595nnybi3554wd0yffsli0vzf7ry01"; depends=[ggplot2 plyr scales withr]; }; ggsci = derive2 { name="ggsci"; version="2.9"; sha256="0g73x6grbka7ahjh6z23m3wrcifp5rdfdiasbl8lq4sp6rplxwaa"; depends=[ggplot2 scales]; }; ggseas = derive2 { name="ggseas"; version="0.5.4"; sha256="1jpdijwll5l7bg7cmjnklkxffysi9ckzg50rw2a2cd00zwby11q9"; depends=[ggplot2 rlang seasonal zoo]; }; ggseqlogo = derive2 { name="ggseqlogo"; version="0.1"; sha256="13q6kcpxrqxqbji889fx63p0nsi08lk5yymkchig75r5k1d18ky1"; depends=[ggplot2]; }; ggsignif = derive2 { name="ggsignif"; version="0.4.0"; sha256="1rn58d7pb3axk6chiihryykrzw76adaa2yiafq4d0j6qbhax78f7"; depends=[ggplot2]; }; ggsn = derive2 { name="ggsn"; version="0.4.0"; sha256="0si3llqlb0dg482cqxhv5lm6raawqwpcd5ymjicw3780xq7d7mrk"; depends=[ggplot2 maptools png]; }; - ggspatial = derive2 { name="ggspatial"; version="0.2.1"; sha256="11vminz4kwv1ny4v9h23sp7j7d45q6v4804xv9fp04qgzbzi9lv8"; depends=[abind ggplot2 maptools plyr raster reshape2 rgdal rosm scales sp]; }; - ggspectra = derive2 { name="ggspectra"; version="0.2.4-1"; sha256="0jp1zfzsnpnvcyw4m7cn4d871pqsniyrhv3j5riir6fa4ll4nmcb"; depends=[dplyr ggplot2 ggrepel lubridate photobiology photobiologyWavebands scales tidyr]; }; - ggstance = derive2 { name="ggstance"; version="0.3"; sha256="0sr84nasr8x8ib3mdsjck73gbfg9xba50s5nxdij0ah9xqnpyhpi"; depends=[ggplot2 lazyeval plyr purrr]; }; - ggstatsplot = derive2 { name="ggstatsplot"; version="0.0.4"; sha256="19rr5cq9s9w4ivdr42ia0vqf62vsq0l1d3f3icp0zy0r9jzsdfwp"; depends=[apaTables boot broom coin cowplot crayon dplyr effsize ggcorrplot ggExtra ggplot2 ggrepel glue gtable jmv lmerTest magrittr MBESS purrr purrrlyr rlang scales sjstats tibble tidyr WRS2]; }; + ggsolvencyii = derive2 { name="ggsolvencyii"; version="0.1.0"; sha256="0qg2qlgnbndrjsri0n628niin2m4g7mhz59szr1cid88kakj33n9"; depends=[dplyr ggplot2 magrittr tidyr]; }; + ggsom = derive2 { name="ggsom"; version="0.2.1"; sha256="0gycd3yzdy58m22r62my5v0s00mr7ga7mcfa6i300arp47lzdwq1"; depends=[dplyr ggplot2 ggthemes kohonen tidyr tidyverse]; }; + ggspatial = derive2 { name="ggspatial"; version="1.0.2"; sha256="0j22s3icqxd1qv38cbznnrdfsprma9mbakfb49hfqbf9m22f2lkn"; depends=[abind ggplot2 plyr raster reshape2 rosm scales sf tibble tidyr]; }; + ggspectra = derive2 { name="ggspectra"; version="0.3.0"; sha256="1kqi555s4hib3npv09xlfbfa1kpp91p09sri5wx8ccc06l8ya9dz"; depends=[dplyr ggplot2 ggrepel lubridate photobiology photobiologyWavebands scales tidyr]; }; + ggstance = derive2 { name="ggstance"; version="0.3.1"; sha256="0v7f3xdaaridw6d4jvnsfwxmpjrasvx5vl555wsrn50aah17fkvh"; depends=[ggplot2 plyr rlang withr]; }; + ggstatsplot = derive2 { name="ggstatsplot"; version="0.0.6"; sha256="0qnsy3a4laph9a5yb1lx5a2fbyxa3swv9x20ailnwanpwc09f71l"; depends=[boot broom broom_mixed coin cowplot crayon dplyr effsize exact2x2 ggcorrplot ggExtra ggplot2 ggrepel glue jmv magrittr paletteer psych purrr purrrlyr rlang scales sjstats tibble tidyr WRS2]; }; ggswissmaps = derive2 { name="ggswissmaps"; version="0.1.1"; sha256="0is48x6k2p5dgj9q4km0dv33a9pcpfhlai9vz295y3acpyrkmnn4"; depends=[ggplot2]; }; - ggtern = derive2 { name="ggtern"; version="2.2.1"; sha256="05dszysn1qr5s4ji4il91pv19xjh5yd09w9f153fmg4cyfl716iz"; depends=[compositions ggplot2 gridExtra gtable latex2exp lattice MASS plyr proto scales]; }; - ggthemes = derive2 { name="ggthemes"; version="3.5.0"; sha256="0drbzzb4i5jq1579fx1wmgh87ybnswjn7srak2l8g771ip49xwb8"; depends=[assertthat colorspace ggplot2 scales]; }; + ggtern = derive2 { name="ggtern"; version="3.0.0"; sha256="1qfgxid4bpzfmjz4jg9rg2sc12xzymadi06ryf4kwb06z4krd1k3"; depends=[compositions ggplot2 gridExtra gtable latex2exp lattice MASS plyr proto scales]; }; + ggthemes = derive2 { name="ggthemes"; version="4.0.1"; sha256="0y6570wv135sf7pv57l7bqilzw47rziaqx4vsk45pf1w4lmj0w8b"; depends=[ggplot2 purrr scales stringr tibble]; }; ggversa = derive2 { name="ggversa"; version="0.0.1"; sha256="0xqn8iznrm8q30pxwka88wi1z7lndi6lm12rq6ngcaxf294fbz01"; depends=[]; }; - ggvis = derive2 { name="ggvis"; version="0.4.3"; sha256="1p7c8f83da30grj5n0v80p5djp6z0r62z5zqpv2a3ahn61w1gm9l"; depends=[assertthat dplyr htmltools jsonlite lazyeval magrittr shiny]; }; + ggvis = derive2 { name="ggvis"; version="0.4.4"; sha256="1bxggjr2313kfy895j0fvrv4bg7yh2z87907lk48i1kn5c9flchk"; depends=[assertthat dplyr htmltools jsonlite lazyeval magrittr shiny]; }; + ggvoronoi = derive2 { name="ggvoronoi"; version="0.8.1"; sha256="1258y0w5jn2jg3gf7pvar1im8vlmifjj28z5syl9iyqa2hvlnrw8"; depends=[deldir ggplot2 raster rgeos sp]; }; + ggwordcloud = derive2 { name="ggwordcloud"; version="0.3.0"; sha256="0bndv4vfan0cx2lpa0qhkfaz4dmp6rda1mgc3vz0vhkg9v3x96k6"; depends=[Cairo colorspace ggplot2 png Rcpp scales]; }; gh = derive2 { name="gh"; version="1.0.1"; sha256="1llinfajb0g7006jd2w1hpskxpmkjhnqarcjb71r1qvsccb2ph7k"; depends=[httr ini jsonlite]; }; - ghibli = derive2 { name="ghibli"; version="0.1.1"; sha256="1jnl017hkzhiic0fndprs68xx3njlijxkaqj9d65xazcwynaq436"; depends=[ggplot2]; }; + ghibli = derive2 { name="ghibli"; version="0.1.2"; sha256="1cp1kdfya11qrm5wy1mr9a98dwkkw3ssjzj2ycgna0rrsml6cawk"; depends=[ggplot2]; }; ghyp = derive2 { name="ghyp"; version="1.5.7"; sha256="195hsskh2ykafqr93f675xqsmhbrki3abi61hk78bzy09n1d4jfk"; depends=[gplots numDeriv]; }; - giRaph = derive2 { name="giRaph"; version="0.1.2"; sha256="137c39fz4vz37lpws3nqhrsf4qsyf2l0mr1ml3rq49zz4146i0rz"; depends=[]; }; gibble = derive2 { name="gibble"; version="0.0.2"; sha256="0a9h3q0kwk9aagcpnmih59vbm5n7hdjpa4idwagky351almblmr6"; depends=[dplyr tibble]; }; gibbs_met = derive2 { name="gibbs.met"; version="1.1-3"; sha256="1yb5n8rkphsnxqn8rv8i54pgycv9p7x1xhinx4l5wzrds3xhf2dc"; depends=[]; }; + gifski = derive2 { name="gifski"; version="0.8.6"; sha256="00w4bzp0rrp4isy1rnxs6g1q07r3wndadk3mqdrxk2wxi7jmghna"; depends=[]; }; gifti = derive2 { name="gifti"; version="0.7.5"; sha256="1y64bc33b5f64a4khp916s9zb7kbb24xgdg3pdlh0f8m6zrbmp4a"; depends=[base64enc R_utils xml2]; }; gim = derive2 { name="gim"; version="0.11.0"; sha256="1psmziq03k1nbdl64sy152ih4g625qkbp5l7msfibrcbpgz0hg7y"; depends=[numDeriv]; }; - gimme = derive2 { name="gimme"; version="0.4-1"; sha256="1b1f92v54r9aqbwia549abjiw712ps4s58yw2n9p9894m4ijc88v"; depends=[igraph lavaan qgraph]; }; + gimme = derive2 { name="gimme"; version="0.4-2"; sha256="0vr9f0c2gxchxivxwhcqp2q5fs5a6j2w9lp0p0qrqha8b5gyqj8h"; depends=[igraph lavaan qgraph]; }; gimmeTools = derive2 { name="gimmeTools"; version="0.1"; sha256="1g170rz3c3qx27yy67f7xab4gkm0pbbvwlwkcsczfxphad609ryl"; depends=[easycsv magrittr miniUI rhandsontable rintrojs rstudioapi shiny shinyjs shinyWidgets]; }; gimms = derive2 { name="gimms"; version="1.1.0"; sha256="0mqffqvaapb0m0d50vg4kvdp67yq99qf54f5anwq4md0rf3x8lid"; depends=[curl Kendall ncdf4 raster RCurl zyp]; }; giphyr = derive2 { name="giphyr"; version="0.1.2"; sha256="1id3r291xyj1ylxgmw2cbazaz0jq4bksj8bijwagcawimfxibz45"; depends=[dplyr httr miniUI purrr rstudioapi shiny tibble]; }; gistr = derive2 { name="gistr"; version="0.4.2"; sha256="0bh325pf37v307isdlvdglripfki8xr6gh7n8mgi4cjparzhrh23"; depends=[assertthat dplyr httr jsonlite knitr magrittr rmarkdown]; }; - git2r = derive2 { name="git2r"; version="0.21.0"; sha256="11xgddmxzh9cy85k8fb90il43qswpvryz0h9r0j1gbclfg2f9004"; depends=[]; }; + git2r = derive2 { name="git2r"; version="0.23.0"; sha256="01250jz255fnyy2ap90nskvzhd8nhlmbhwgpvb43mk1fax077lrz"; depends=[]; }; gitgadget = derive2 { name="gitgadget"; version="0.2.1"; sha256="02jmp5lnk156sfqlv91jn42xds98ihya1x2f97cfwpzlas5qrxky"; depends=[curl dplyr jsonlite miniUI rstudioapi shiny]; }; githubinstall = derive2 { name="githubinstall"; version="0.2.2"; sha256="0hqh86r2007hzdbm8rr0fwqhhsna7ji8sdgmdnrxkxraa5f2pfz3"; depends=[curl data_table devtools httr jsonlite mockery]; }; gitlabr = derive2 { name="gitlabr"; version="0.9"; sha256="0i9sqqvn9xzknybsj9nmi6kclw8c35shy658li17455d28gv4653"; depends=[base64enc dplyr httr magrittr purrr stringr tibble yaml]; }; gitter = derive2 { name="gitter"; version="1.1.1"; sha256="10m4rs6mhg7xn8dfd41ai0bnn5bnxn6cgqip22hrrpj0i2lzky6l"; depends=[EBImage ggplot2 jpeg logging PET tiff]; }; givitiR = derive2 { name="givitiR"; version="1.3"; sha256="0y2slhxhj7k413kjaydin9hq3x2xgx4cgjshdplwnmg3x2nakn31"; depends=[alabama rootSolve]; }; - gjam = derive2 { name="gjam"; version="2.2.4"; sha256="16gfb199mhpg0yp7xy9x8nlpcfmhkks92fwfa1ryv6plkzn6rhkl"; depends=[MASS RANN Rcpp RcppArmadillo]; }; + gjam = derive2 { name="gjam"; version="2.2.6"; sha256="16csy2vr4ly09f5nqwad1ik1nj0yhmxs1jj1rjqdi2ramh4jlwlx"; depends=[MASS RANN Rcpp RcppArmadillo]; }; gk = derive2 { name="gk"; version="0.5.1"; sha256="1hgxb1lp78pbnj22i7ryf46im301j05y7hh75z2fxvv5nqgg2v75"; depends=[Ecdat lubridate progress]; }; gkmSVM = derive2 { name="gkmSVM"; version="0.79.0"; sha256="04dakbgfvfalz4rm4fvvybp506dn5fbj5g86ybfhrc6wywjllsz3"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges IRanges kernlab Rcpp ROCR rtracklayer S4Vectors seqinr]; }; glacierSMBM = derive2 { name="glacierSMBM"; version="0.1"; sha256="0117fzz2b1lccs0kkwz59w2yysi72j54yvz7373pz11w7rjds84f"; depends=[raster sp udunits2]; }; glamlasso = derive2 { name="glamlasso"; version="3.0"; sha256="1ynhl868kh25l8m04ln6ix31z9r26lrbr5ajprpq9yfhqs4l9ddc"; depends=[Rcpp RcppArmadillo]; }; glarma = derive2 { name="glarma"; version="1.6-0"; sha256="0n0mv4xvh5q3y383cs224x6r608ciw4822pkanvmcjsc9zl0z1ar"; depends=[MASS]; }; glassdoor = derive2 { name="glassdoor"; version="0.7.6"; sha256="0zgkz32vp71fyy25lx4kaa5gj5aj7glhxa0yqnawl1j1a4klj3v3"; depends=[httr xml2]; }; - glasso = derive2 { name="glasso"; version="1.8"; sha256="0gcapw7kyxb19wvdyxq1vsmc5j7yyd0rvqxs2i71k31q352sg6zw"; depends=[]; }; + glasso = derive2 { name="glasso"; version="1.10"; sha256="0nshpx14v2yny7lr8ll6nnz71n0f02sddh2c2dglfprbk89p9yp6"; depends=[]; }; + glassoFast = derive2 { name="glassoFast"; version="1.0"; sha256="1sgmh4l06q7mrmgnimphpqgix4k4jzaj2l30kpmnf92caa2v7ngw"; depends=[]; }; glba = derive2 { name="glba"; version="0.2"; sha256="0ckcz6v6mfbv34s8sp086czhb5l58sky79k84332rrz6wj47p3md"; depends=[]; }; glcm = derive2 { name="glcm"; version="1.6.1"; sha256="0xzfhafc7326v3g1xngp584039iknw3q3bcx8f0j4ig125in7sxk"; depends=[Rcpp RcppArmadillo]; }; gld = derive2 { name="gld"; version="2.4.1"; sha256="0ycm3w8s5bm5w2lqy0qa877cwjcwc9x1zyyyrknwwjjxip250iaw"; depends=[e1071 lmom]; }; gldrm = derive2 { name="gldrm"; version="1.5"; sha256="1mbdxqjw6sa47kigwrjq1gn6vi36zhg9j2lck144iwa10ms0y9xp"; depends=[]; }; glinternet = derive2 { name="glinternet"; version="1.0.8"; sha256="06ak80j01cbrr6s8hmcc734z476rrqzib0xqjgv7c3jbw0api71y"; depends=[]; }; gllm = derive2 { name="gllm"; version="0.35"; sha256="1m9asamh2yha9q8mrllvvc9qj2im6cspvfpafzc8krmh17zq4ins"; depends=[]; }; - gllvm = derive2 { name="gllvm"; version="0.1.0"; sha256="13ca5ms6bbrj3ny5n438v5ma0d7ccnghysz7c8452cpdq8sn87iy"; depends=[fishMod MASS Matrix mvabund mvtnorm Rcpp RcppEigen statmod TMB]; }; + gllvm = derive2 { name="gllvm"; version="1.0"; sha256="1bhxwv4nggl2pbbr3c53j8jk02l4kwzkdhg4wmv9xlpd3mc2qb07"; depends=[fishMod MASS Matrix mvabund mvtnorm RcppEigen statmod TMB]; }; glm_deploy = derive2 { name="glm.deploy"; version="1.0.4"; sha256="1akklvbhz2pp0sv1hax1jq0s9ajbfv1597z643gh5l9hwizj2h9m"; depends=[Rcpp]; }; glm_predict = derive2 { name="glm.predict"; version="3.0-1"; sha256="0miba0xha99rmriqs7ifriq86ykn04j04f3ywk29bpph4iwc5faq"; depends=[MASS nnet]; }; - glm2 = derive2 { name="glm2"; version="1.2"; sha256="09bjqz7zih644hba27illlmzfcs94q5h4fdplg948adi1z790las"; depends=[]; }; + glm2 = derive2 { name="glm2"; version="1.2.1"; sha256="1byqlvpls23gzy7xlbs1kgfr4bsrmsrpc8rzzacf9czap1nlw39y"; depends=[]; }; glmBfp = derive2 { name="glmBfp"; version="0.0-51"; sha256="15jm450j1f0nl7vqvpb2mwapdlvn7kq2kxf5s96x21siwsz7sssv"; depends=[coda Rcpp RcppArmadillo rms Runuran statmod survival]; }; glmbb = derive2 { name="glmbb"; version="0.3"; sha256="12yabwswps0fmprh8nb9jdny9xrm13jvc0d9m3w04ppmsvalrmwl"; depends=[digest]; }; glmc = derive2 { name="glmc"; version="0.2-4"; sha256="03m1ym9w0b0gqib13pnh1yrjijlcwsn5lijg0nsr4hd6gxw29cla"; depends=[emplik]; }; @@ -7024,7 +7336,7 @@ in with self; { glmmLasso = derive2 { name="glmmLasso"; version="1.5.1"; sha256="1az9vdnyqyrfn1q7zrn6x4ywx77b0vg65cni45x37b0ybkwpis39"; depends=[Matrix minqa]; }; glmmML = derive2 { name="glmmML"; version="1.0.3"; sha256="1svawi74rfir9czqyf194wmh4fw053n81j7prnanyfskrchkd94k"; depends=[]; }; glmmTMB = derive2 { name="glmmTMB"; version="0.2.2.0"; sha256="1clpkjlmsjmn3m1z5jqv8cgw6bvpqsy4nx6k947r0jya017ny5y5"; depends=[lme4 Matrix nlme RcppEigen TMB]; }; - glmmboot = derive2 { name="glmmboot"; version="0.1.2"; sha256="0c7in0sq7q1dfgk316j0aizycn8mdpjknf1yfp3d670g3275sx87"; depends=[]; }; + glmmboot = derive2 { name="glmmboot"; version="0.2.0"; sha256="1gc04pgii1i7804mmcwgni3w0j1i9cwr7rmdm4rixnx2kxrdq9h3"; depends=[]; }; glmmfields = derive2 { name="glmmfields"; version="0.1.0"; sha256="1b7p1srwavpqm2468n4sxhbm988pxz7zvj76h86fig1jdqf9hlix"; depends=[assertthat BH broom cluster dplyr forcats ggplot2 loo mvtnorm nlme Rcpp RcppEigen reshape2 rstan rstanarm StanHeaders]; }; glmmsr = derive2 { name="glmmsr"; version="0.2.2"; sha256="05psf6yjsp3zgh7lfdh2pk1zycp7rgdk61ccm7059f60dzg182b9"; depends=[BH lme4 Matrix numDeriv R6 Rcpp RcppEigen]; }; glmnet = derive2 { name="glmnet"; version="2.0-16"; sha256="1brr51z1fzbpyj6myyir4g6dhbp6xwl7nx4xnvrjarnf5y0csk55"; depends=[foreach Matrix]; }; @@ -7039,24 +7351,27 @@ in with self; { globalGSA = derive2 { name="globalGSA"; version="1.0"; sha256="1f3xv03m6g2p725ff0xjhvn2xcfm7r7flyrba080i4ldy6fd8jg8"; depends=[]; }; globalOptTests = derive2 { name="globalOptTests"; version="1.1"; sha256="0yf4p82dpjh36ddpfrby7m3fnj2blf5s76lncflch917sq251h4f"; depends=[]; }; globalboosttest = derive2 { name="globalboosttest"; version="1.1-0"; sha256="1k7kgnday27sn6s1agzlj94asww81655d2zprx6qg7liv677bxvf"; depends=[mboost survival]; }; - globals = derive2 { name="globals"; version="0.12.1"; sha256="1yfgxnvrd0xnl5ir5835lna3a1zwy0s2apibi270mj5sflrlfwia"; depends=[codetools]; }; + globals = derive2 { name="globals"; version="0.12.4"; sha256="0szyv1ayyk31bh3xqlkj43020w44xq6s4rw2bxwizyjssxm3b1br"; depends=[codetools]; }; globe = derive2 { name="globe"; version="1.2-0"; sha256="0xa0q5dac0g7xdlr679f3km8nqxlm7gi4msp9fbfivfvy0rmri96"; depends=[]; }; glogis = derive2 { name="glogis"; version="1.0-1"; sha256="1sbvcg5slvd2c7fasvbj534x36rh11zq3mxv5z0jwpqd6h1xadmd"; depends=[sandwich zoo]; }; - glpkAPI = derive2 { name="glpkAPI"; version="1.3.0"; sha256="0173wljx13jali2jxz4k5za89hc64n2j9djz5bcryrqhq4rmkp87"; depends=[]; }; + glpkAPI = derive2 { name="glpkAPI"; version="1.3.1"; sha256="06p8zvmshymcw994mmf1ar00kfj645z8dp18yy4i5bl6qydbpb8k"; depends=[]; }; glrt = derive2 { name="glrt"; version="2.0"; sha256="0p2b0digndvnn396ynv56cdg436n3ll7pxkb81rs3dhwbyqyc948"; depends=[survival]; }; - glue = derive2 { name="glue"; version="1.2.0"; sha256="0vi9y8ix95g6hjqdz9c9y4119apbdjcypdv0ag8cl6vaxqs5n9qr"; depends=[]; }; + glue = derive2 { name="glue"; version="1.3.0"; sha256="1vhw5497lpfr4m8lcx9bs0fgdp4ax0sycrk6n8yksp33qd25m7kq"; depends=[]; }; + glycanr = derive2 { name="glycanr"; version="0.3.1"; sha256="1wygy5r5rdkcxrraqkqs2kd0nj8x2whm6k556pyd1sa4ra8xgvjp"; depends=[coin dplyr ggplot2 tidyr]; }; gmDatabase = derive2 { name="gmDatabase"; version="0.5.0"; sha256="0prap4a8pvylmvakd2ii87jz9bqf0vvfsxdi4iwa40nx444hqhx2"; depends=[DBI digest foreach RMySQL shiny]; }; gma = derive2 { name="gma"; version="1.0"; sha256="08hxbs9z4vq5zjis0lgdcvlysaj1k7i0icdk3wsyqf3wd9znsibi"; depends=[car MASS nlme]; }; gmailr = derive2 { name="gmailr"; version="0.7.1"; sha256="1gniwwl0ci0wm7a3ai2lqrr590smmkdgyf3aarw6bdygn8hr3s3y"; depends=[base64enc crayon httr jsonlite magrittr mime]; }; - gmapsdistance = derive2 { name="gmapsdistance"; version="3.3"; sha256="09vgrfv5dj0myys0rl767wn0xx1yvmm176c48812ysj2kj3fa29v"; depends=[RCurl XML]; }; + gmapsdistance = derive2 { name="gmapsdistance"; version="3.4"; sha256="1hazf6xb4ja6h2lrl63kbd78wzny9sljiid9rq1r3szn3l1mc7dn"; depends=[RCurl XML]; }; + gmat = derive2 { name="gmat"; version="0.1.0"; sha256="1fpkx91fwr6cj6jn9a4lsj5f3nhvg8lyxandqbv9z5imb73d1gci"; depends=[igraph]; }; gmediation = derive2 { name="gmediation"; version="0.1.1"; sha256="0md4h298vqw67qrjcaia6xz8s7akdpcmxa83irm12qgbh56a5rpr"; depends=[MASS plyr VGAM]; }; gmeta = derive2 { name="gmeta"; version="2.3-0"; sha256="1izfz6gkisa8rskhfka6q73rcgzwdsmkdhy79jwcaqk25jrwfk60"; depends=[BiasedUrn binom]; }; gmfd = derive2 { name="gmfd"; version="1.0.1"; sha256="03sag09x7pjyzsp6w1z06108ig068krmw75064cnl3pqfvfyjfgr"; depends=[]; }; gmm = derive2 { name="gmm"; version="1.6-2"; sha256="0pbimp4g5hpi949m6dpwwds3a9dv2m4iwwg2gbqq1m62fs18hbxi"; depends=[sandwich]; }; gmnl = derive2 { name="gmnl"; version="1.1-3"; sha256="05p2kikv8zz9ldc6xi5bz7fyinpd0sp2v82hxhx6h54hfa6i7b9v"; depends=[Formula maxLik mlogit msm plotrix truncnorm]; }; gmodels = derive2 { name="gmodels"; version="2.18.1"; sha256="0s8kd8krqk4kwv2zqxpsfy3w8qdwf5naf4b5l383vidq9sil0qb2"; depends=[gdata MASS]; }; - gmp = derive2 { name="gmp"; version="0.5-13.1"; sha256="0xh9dli4i7hyjywsn2h780cxl3k7v0q421djyr1wshk7l9s5701g"; depends=[]; }; + gmp = derive2 { name="gmp"; version="0.5-13.2"; sha256="1xd6jjra4niqv1kps91y348lwgvy73p2faxaia4gfzdnrpw7wsxf"; depends=[]; }; gmt = derive2 { name="gmt"; version="2.0-1"; sha256="1g1sj9gq3h3s0pdcfvzg7iifkns5azn3pa83if0d3yzc28cjf0yz"; depends=[]; }; + gmvarkit = derive2 { name="gmvarkit"; version="1.0.3"; sha256="1497n11a7m5mbb8d3hcr89yhfh64vqsxi2w6kvlrxmmx95q2cp70"; depends=[Brobdingnag mvnfast pbapply]; }; gnFit = derive2 { name="gnFit"; version="0.2.0"; sha256="0cji4zjslh18dfj0l827r6br4hx2f0akiaxrg7fhhyyyhgdcjnsm"; depends=[ismev rmutil]; }; gnlm = derive2 { name="gnlm"; version="1.1.0"; sha256="0fv89cvbnp9n3lgg6y4sqmz9jzcgwj7vd92rwg7hixwrjyqpan4z"; depends=[rmutil]; }; gnm = derive2 { name="gnm"; version="1.1-0"; sha256="01d7wxsh4d9w4jh8vn62sjzgpll650yl3klfhlaa8j0qwpxr2fml"; depends=[MASS Matrix nnet qvcalc relimp]; }; @@ -7066,7 +7381,7 @@ in with self; { goalprog = derive2 { name="goalprog"; version="1.0-2"; sha256="1h3nd3d53hbz5hl3494lpfjnp1ddklc17nhgw18362jd1nk14awy"; depends=[lpSolve]; }; goeveg = derive2 { name="goeveg"; version="0.3.3"; sha256="1p66fc1vr09zxp1h81b8by2cldxn0q8vivcc5g3pggb65d9wj846"; depends=[fields mgcv vegan]; }; gof = derive2 { name="gof"; version="0.9.1"; sha256="1s12gga9d6yizn2y7lzql4jd80lp5jpyml8ybn7xqswp8am82vpg"; depends=[]; }; - gofCopula = derive2 { name="gofCopula"; version="0.2-3"; sha256="1xigbv9mc0c1j3qc0nay0fjwmqvw91cy3x1z6m56bgkgfli7gp2l"; depends=[copula doParallel foreach MASS numDeriv R_utils SparseGrid VineCopula]; }; + gofCopula = derive2 { name="gofCopula"; version="0.2-4"; sha256="1v54vhjhavz74bmnppp2cda4qsd57s2vh2j2d3ilwzbycva7kmkl"; depends=[copula doParallel foreach MASS numDeriv R_utils SparseGrid VineCopula]; }; gofMC = derive2 { name="gofMC"; version="1.1.2"; sha256="0hbqx0z2517qgmp6sjg76hv74yrkfbswb9rmfjmsmcyzj2x67w86"; depends=[ggplot2 scales]; }; gofastr = derive2 { name="gofastr"; version="0.3.0"; sha256="02jn4xbbafl7siwvkqns1818wmw813x9cvqfcnpnmcippiqhrb0b"; depends=[data_table quanteda slam SnowballC tm]; }; goft = derive2 { name="goft"; version="1.3.4"; sha256="15n1av7r6w8hihxlgw9pd570qgrlcprkkacln15chvjs3b0i60la"; depends=[fitdistrplus]; }; @@ -7081,14 +7396,15 @@ in with self; { googleCloudStorageR = derive2 { name="googleCloudStorageR"; version="0.4.0"; sha256="1iwn0qjyxyg1xr1s492h7z2g5yzcfw8kasd4ghxmghnqvhzzf7vn"; depends=[assertthat curl googleAuthR httr jsonlite openssl yaml zip]; }; googleComputeEngineR = derive2 { name="googleComputeEngineR"; version="0.2.0"; sha256="1kslsi7gc4na8pm8dyizswf9pfpdq1rprn08rd7kbxsisclbzc7y"; depends=[assertthat future googleAuthR httr jsonlite]; }; googleLanguageR = derive2 { name="googleLanguageR"; version="0.2.0"; sha256="1l0gnynild95k9fw1d398zd4dkws97p13vvfv6jaklqj0xmh9ib8"; depends=[assertthat base64enc googleAuthR jsonlite magrittr purrr tibble]; }; - googlePolylines = derive2 { name="googlePolylines"; version="0.6.1"; sha256="1g28py8amkfq8cgf297w9yv1n26wm2alb6gmcal3i39qfadkdhsv"; depends=[BH Rcpp]; }; + googlePolylines = derive2 { name="googlePolylines"; version="0.7.1"; sha256="194wh92z65g1f4b1a5pdv2jlwkmdr3fjkj9kai993kn7zkpbkpa0"; depends=[BH Rcpp]; }; googlePrintr = derive2 { name="googlePrintr"; version="0.0.1"; sha256="19rm78x8qd61ilc6h1kn3dw63m6dfsckqkd3n76krvi0akgl72w5"; depends=[googleAuthR httr jsonlite]; }; googlePublicData = derive2 { name="googlePublicData"; version="0.16.1"; sha256="15hyslpqvncg21q581h061rfyg99y8lavqw1x8hzl7xzd49bn9r5"; depends=[readxl XML]; }; googleVis = derive2 { name="googleVis"; version="0.6.2"; sha256="1idnp9ndgg2dwybdpw7q3pkaw9kw2vy2xkls9qykrpz1p6nf3mn1"; depends=[jsonlite]; }; - googledrive = derive2 { name="googledrive"; version="0.1.1"; sha256="1fshv85s4ldw2kc7lbbdvrl260pz76z04awx1n6lg0f5xmba9rfg"; depends=[curl glue httr jsonlite purrr rlang tibble uuid]; }; + googledrive = derive2 { name="googledrive"; version="0.1.2"; sha256="04167xqdfj99jp5i1029caah1wy9dpbwm7n543x7fmsik7czc2g5"; depends=[curl glue httr jsonlite purrr rlang tibble uuid]; }; googleformr = derive2 { name="googleformr"; version="0.0.3"; sha256="0smykcjyqmk61ws5jk462l8x5hg0h9nwq55q5pqfgcq1j3yfniqh"; depends=[httr rvest xml2]; }; + googlenlp = derive2 { name="googlenlp"; version="0.2.0"; sha256="0d0g18i3im2s5f14k69ym3vwf9a7zkaval3nwrip97xcl6kf4x9h"; depends=[dplyr httr jsonlite purrr readr rlang]; }; googlesheets = derive2 { name="googlesheets"; version="0.3.0"; sha256="11q07nxys72wkxx9mawmjyf20gvwvrb7h3gpa73h6lgh2vgrwnv8"; depends=[cellranger dplyr httr jsonlite purrr readr stringr tibble tidyr xml2]; }; - googleway = derive2 { name="googleway"; version="2.7.0"; sha256="129yyy21sdbhhffg23jkhs0d6f03di4da5mwgg8x8ckv7r9jraw8"; depends=[curl googlePolylines htmltools htmlwidgets jpeg jqr jsonlite magrittr scales shiny viridisLite]; }; + googleway = derive2 { name="googleway"; version="2.7.1"; sha256="0axpr81p3gdp1nmfn000lk288sdn8z5qmzjvagdxqn5j44hq6sj1"; depends=[curl googlePolylines htmltools htmlwidgets jpeg jqr jsonlite magrittr scales shiny viridisLite]; }; goric = derive2 { name="goric"; version="1.1-0"; sha256="1smjq9vljszgngs5i6x55jwg0imzc5gsfdqxzcs4541fp3pvk999"; depends=[MASS Matrix mvtnorm nlme quadprog]; }; govStatJPN = derive2 { name="govStatJPN"; version="0.1"; sha256="03sywa7rl5rblvv370mfszz5ngp850qf32yydy1fdx10lv5amrfl"; depends=[]; }; gower = derive2 { name="gower"; version="0.1.2"; sha256="1mbrj1lam3jfbby2j32shmmj5cn09zx3rkxbamq7q8sdg39b54gb"; depends=[]; }; @@ -7115,32 +7431,33 @@ in with self; { granova = derive2 { name="granova"; version="2.1"; sha256="161fznqlnwmw53abmg2n62lhxxda7400ljnadvcdvsm8f6kcjf80"; depends=[car]; }; granovaGG = derive2 { name="granovaGG"; version="1.4.0"; sha256="0khqlqc6jg9cpdq06g6jlpfjcw3m6rj40ipljfai8g1630ril6q4"; depends=[ggplot2 gridExtra plyr RColorBrewer reshape2]; }; grapes = derive2 { name="grapes"; version="1.0.0"; sha256="079b7w2xhb0a481s7qihhka0l9ydkjdph0865wjjkcbpr4775p26"; depends=[magrittr]; }; - graphTweets = derive2 { name="graphTweets"; version="0.4.0"; sha256="1zw04s61wjgrx6r6fspp59y5l3bfjf68klcrkp7alaap5dpjsn9a"; depends=[dplyr igraph magrittr purrr reshape2 rtweet splitstackshape]; }; + graphTweets = derive2 { name="graphTweets"; version="0.5.0"; sha256="1j85kvnp9qgs3r1bczcxb2havykalzr444r7a1qbc8swkp4f8llb"; depends=[combinat dplyr igraph magrittr purrr rtweet tidyr zeallot]; }; grapherator = derive2 { name="grapherator"; version="1.0.0"; sha256="071by9b8figbsf4g0f8a8mgcdksjksc57mnlgggilw7py1yjnjlh"; depends=[BBmisc checkmate deldir ggplot2 lhs reshape2 vegan]; }; graphframes = derive2 { name="graphframes"; version="0.1.1"; sha256="1qharg73aaw5xdvkngsxb9wzsgb4xc067cxm20d9yiz4qm7a9050"; depends=[sparklyr tibble]; }; graphicalVAR = derive2 { name="graphicalVAR"; version="0.2.2"; sha256="1jzhqbdylpzc8d28vz2k34i9dpxx5x34bgvx73z8wjglnn6j27b8"; depends=[dplyr glasso glmnet igraph Matrix mvtnorm qgraph Rcpp RcppArmadillo]; }; graphicsQC = derive2 { name="graphicsQC"; version="1.0-8"; sha256="12vg93xfmkv73i19vkb10q2qngmsxd3y42z3l6izdywbdc3cdfkg"; depends=[XML]; }; graphkernels = derive2 { name="graphkernels"; version="1.6"; sha256="1gn3ihqz7m0rdvvc2fp7hsgq583wh5cnz7200a2ff89xc04zs3dc"; depends=[igraph Rcpp RcppEigen]; }; - graphon = derive2 { name="graphon"; version="0.2.0"; sha256="0fdvi2nn7g39mc85jg3rgwyk2wjh2k60pd9lyivfbg3140k1yawh"; depends=[ROptSpace]; }; + graphon = derive2 { name="graphon"; version="0.3.0"; sha256="0w5xgfhshdinwyyb3qc2rhz37w6n0p1clp83dz1vx67n2vbj7wha"; depends=[Rdpack ROptSpace]; }; graphql = derive2 { name="graphql"; version="1.4"; sha256="103vggx9273dg4fkrhik4p1vj8qh7gxavyh933qxhajpmhnfhksh"; depends=[jsonlite Rcpp]; }; graphscan = derive2 { name="graphscan"; version="1.1.1"; sha256="1dgjb0grdymhimdgwnddjcivgy2i9r1i1nni4v9mx0447skcahk9"; depends=[ape rgl snowfall sp]; }; graticule = derive2 { name="graticule"; version="0.1.2"; sha256="1yvrijvyjilfql72dxj32b3sczqv065zj61729wrrzn63xcifvmb"; depends=[raster sp]; }; - grattan = derive2 { name="grattan"; version="1.6.0.0"; sha256="0w8dqnj8di3fm2vp1bz2wdyh207rh9vwqc25mhxg73jjmls8rd33"; depends=[assertthat data_table fastmatch forecast hutils ineq magrittr Rcpp rsdmx zoo]; }; - gravity = derive2 { name="gravity"; version="0.6"; sha256="15ngk6a5f6xjvisk6ma625iaw4ybg7722xgmnr4rnlmsgm95v668"; depends=[censReg glm2 lmtest MASS multiwayvcov sandwich survival]; }; - grec = derive2 { name="grec"; version="1.2.0"; sha256="1djmi5nm4xdxzyikll3wcgfabqr952qqlyxad8frvxy878a85fpw"; depends=[imagine raster]; }; + grattan = derive2 { name="grattan"; version="1.7.0.0"; sha256="1jy3yafymznb2bnjy9njh3sn422vsmmdlzs2is941y3syzji6l84"; depends=[assertthat data_table fastmatch forecast hutils ineq magrittr Rcpp rsdmx zoo]; }; + gravity = derive2 { name="gravity"; version="0.8.5"; sha256="0qsa93sd9vqnkhnd8jgypv48fcaba9hwnpbkpgr5cr57dj1vwxzh"; depends=[censReg dplyr glm2 lmtest magrittr MASS multiwayvcov purrr Rdpack rlang sandwich survival tibble tidyr]; }; + grec = derive2 { name="grec"; version="1.2.2"; sha256="0xr17xq4hvl6zaajj04cwymmpzfnbwb86z0ziarj5bc5wjfw0yb2"; depends=[imagine raster]; }; + gren = derive2 { name="gren"; version="0.0.1"; sha256="1wb5wwdjxi7q36md7xzmbw5lrggcgghkz3pmxipjpxw8kfv804xp"; depends=[glmnet Iso pROC Rcpp RcppArmadillo]; }; greport = derive2 { name="greport"; version="0.7-1"; sha256="1h1g3khb30n3y8l1sxpas2s6s667az4yxvsq42x5dfx8fic42p6n"; depends=[data_table Formula ggplot2 Hmisc lattice latticeExtra rms survival]; }; greta = derive2 { name="greta"; version="0.2.3"; sha256="10vli747b5a1m53qszxk91wppg9511la9yc823qrr51s92z8i222"; depends=[coda progress R6 reticulate tensorflow]; }; grex = derive2 { name="grex"; version="1.8"; sha256="0z81dlzk5vv51nwhfiijzpxgf71m4fsrfqzrbxx2kyf3f8c9xg1r"; depends=[]; }; - greybox = derive2 { name="greybox"; version="0.2.2"; sha256="1kgxcg9502gn766p4qvdbixi25gc81xg49wlzv02gcsqf2nzrl1c"; depends=[forecast lamW]; }; + greybox = derive2 { name="greybox"; version="0.3.2"; sha256="1vqkq015qzlqqajhxswiqikaw4ykjs5rasdwyjxj2ggq1ks78px8"; depends=[forecast lamW nloptr numDeriv]; }; greyzoneSurv = derive2 { name="greyzoneSurv"; version="1.0"; sha256="115i0d4fy4p4g4vd419hj9f23hi8cbiyfilgpgmag91ilr1xpcdp"; depends=[Hmisc survAUC survival]; }; - grf = derive2 { name="grf"; version="0.10.0"; sha256="1pfpgnnzqasai797kizmpv4sgr0i38amppmqwba22rs5mrz72c9w"; depends=[DiceKriging Matrix Rcpp RcppEigen sandwich]; }; + grf = derive2 { name="grf"; version="0.10.1"; sha256="03i6gidz4jrwqcc60c4gv0l83d5ckm5pg5vm8bgbxc6dbg1636z3"; depends=[DiagrammeR DiceKriging lmtest Matrix Rcpp RcppEigen sandwich]; }; gridBase = derive2 { name="gridBase"; version="0.4-7"; sha256="09jzw4rzwf2y5lcz7b16mb68pn0fqigv34ff7lr6w3yi9k91i1xy"; depends=[]; }; gridDebug = derive2 { name="gridDebug"; version="0.5-0"; sha256="12zrl7p8p7071w5viymdipycja7a2arvy0aahgahd5nlx1k1gha0"; depends=[graph gridGraphviz gridSVG]; }; gridExtra = derive2 { name="gridExtra"; version="2.3"; sha256="0fwfk3cdwxxim7nd55pn7m31bcaqj48y06j7an2k1v1pybk0rdl1"; depends=[gtable]; }; gridGraphics = derive2 { name="gridGraphics"; version="0.3-0"; sha256="1p94flvq5h3x817pl1m0aj3sim87x6zdbpv9xrgdnqw3rxfzwgqs"; depends=[]; }; gridGraphviz = derive2 { name="gridGraphviz"; version="0.3"; sha256="1jz0d6kc8ci55ffm6dns8bhak9xnaq7mg5mpv3fk53lircn7mwl5"; depends=[graph Rgraphviz]; }; gridSVG = derive2 { name="gridSVG"; version="1.6-0"; sha256="06nxp0h6clsfxcx5lf11sgzq7v4ijbynh6hldbnpm6pqwn18hb0j"; depends=[jsonlite XML]; }; - gridsample = derive2 { name="gridsample"; version="0.2.0"; sha256="0hpfhkma60h59z3akjqs7igs6zg00xs3jlq3sm48gxbjrk7fb5sm"; depends=[data_table deldir geosphere maptools raster rgdal rgeos sp spatstat spatstat_utils]; }; + gridsample = derive2 { name="gridsample"; version="0.2.1"; sha256="062aryy26x07m31r6m0fj1zgnjhivlh1fikx9lv2rdgk0rh4yzz0"; depends=[data_table geosphere maptools raster rgdal rgeos sp spatstat spatstat_utils]; }; gridsampler = derive2 { name="gridsampler"; version="0.6"; sha256="0wqpqg9c372sv8zqks6v93gawiyfghw58hn7m8q45dxpqm16ss3k"; depends=[BiasedUrn ggplot2 plyr reshape2 shiny shinyBS shinythemes]; }; grnn = derive2 { name="grnn"; version="0.1.0"; sha256="1dxcmar42g9hz4zlyszlmmnnsnja0gxfggav5jxv0gkp32rkd0wh"; depends=[]; }; groc = derive2 { name="groc"; version="1.0.6"; sha256="0x7rrf5bw05s257xhzklpc6hslpjnzjx02hlrz4r9zixbfffmawc"; depends=[MASS mgcv pls robust robustbase rrcov]; }; @@ -7150,19 +7467,19 @@ in with self; { groupdata2 = derive2 { name="groupdata2"; version="1.0.0"; sha256="11j5p3afr5qc227ljdwwwp17jzaylqlhc7g0gr3jvgrhjnijs2a0"; depends=[dplyr numbers plyr]; }; grouped = derive2 { name="grouped"; version="0.6-0"; sha256="1glxgacpwk7yjbkwg5ci6bmb2il6hf5zhydwi5bbq6hc032m9976"; depends=[MASS]; }; groupedSurv = derive2 { name="groupedSurv"; version="1.0.3"; sha256="15ah8v1mfyq9xi27kkl0vwwbhf16vd4hy9h809jlw1i7b1zwg4pm"; depends=[BH doParallel doRNG foreach qvalue Rcpp RcppEigen]; }; - groupedstats = derive2 { name="groupedstats"; version="0.0.1"; sha256="19rdn86zzv40f0ha0q043wj538scbj1x2j80bwllcbl78cmpq3i3"; depends=[broom crayon dplyr glue magrittr purrr rlang robust rstudioapi sjstats skimr tibble tidyr]; }; + groupedstats = derive2 { name="groupedstats"; version="0.0.3"; sha256="026z5gj1ghnc1y38k4s33b3m2wmm9kdxf62aa90rg0xgq6gc9061"; depends=[broom broom_mixed crayon dplyr glue lme4 magrittr purrr rlang robust rstudioapi sjstats skimr tibble tidyr]; }; groupsubsetselection = derive2 { name="groupsubsetselection"; version="1.0.3"; sha256="118cj5xc8nbq4fs2gbzg1nhynixaflbl0si77gyy4ybw0drsz4nj"; depends=[]; }; grove = derive2 { name="grove"; version="1.1"; sha256="0fqsj5dx7py7cin3hvfkxglh8v3x0dwj6cxy4h5vbddjl687db5x"; depends=[Rcpp RcppArmadillo wavethresh]; }; growcurves = derive2 { name="growcurves"; version="0.2.4.1"; sha256="0h96c1hd6cdzc2l2a9dakmxn2hspvr0fpx9938iscm4hi9ds97m2"; depends=[Formula ggplot2 Rcpp RcppArmadillo reshape2]; }; growfunctions = derive2 { name="growfunctions"; version="0.14"; sha256="1pvyiw20fxm3l4giyq4iizc67yy36i6wq4ch2qyqg4mfd4bki2g4"; depends=[ggplot2 mvtnorm Rcpp RcppArmadillo reshape2 spam]; }; growth = derive2 { name="growth"; version="1.1.0"; sha256="0d1hc56ybp5chckqv5q5jvpgbl7xn9dkbc4dd4sz5gawn1hngbxm"; depends=[rmutil]; }; - growthcurver = derive2 { name="growthcurver"; version="0.2.1"; sha256="0q70g940ggpwnx2cpq2j8ambfbj9sqw6ivyp9cya1nbn05bah9ds"; depends=[caTools minpack_lm]; }; + growthcurver = derive2 { name="growthcurver"; version="0.3.0"; sha256="0q7g00b9sxxlq8yscmmccr8r4mwzpc707arbrr46iii8ra9icvlb"; depends=[minpack_lm]; }; growthmodels = derive2 { name="growthmodels"; version="1.2.0"; sha256="1wy5z77819s3daa0mifafcjfkggsq0ac522yagj86ml3vf7yqppj"; depends=[]; }; growthrate = derive2 { name="growthrate"; version="1.3"; sha256="1ak3yqlm7dnkdjlmikwa57qnf7yd9n1ixz36gv3shr252750x9cd"; depends=[clime Matrix mvtnorm]; }; growthrates = derive2 { name="growthrates"; version="0.7.2"; sha256="1szyc85gi0wgg98br53lxqpamic1srvfiyq1m818j38xnlyj1lxw"; depends=[deSolve FME lattice]; }; grpSLOPE = derive2 { name="grpSLOPE"; version="0.2.1"; sha256="1r9irf83f7szhkdqis2rakil8fsr3rqsfrj4dmbg3r3rnr8wl8nh"; depends=[SLOPE]; }; - grplasso = derive2 { name="grplasso"; version="0.4-5"; sha256="15bqckq9qjdlllhfpb21vzgi9msbl544alkrz01w1vvb3hk1847y"; depends=[]; }; - grpreg = derive2 { name="grpreg"; version="3.1-4"; sha256="0lxr83imsg3g9nk2cmvmg6mying23f05f5q2xniiqvayrd7i4ii9"; depends=[Matrix]; }; + grplasso = derive2 { name="grplasso"; version="0.4-6"; sha256="0xr6plgnc3lp93rd4jk4dqjix8kgl8s2b68fh41k6jwd5y8d7pks"; depends=[]; }; + grpreg = derive2 { name="grpreg"; version="3.2-0"; sha256="0jvkdmhm7q22z7faz1k8n87jw3f16bqr7yqmj2nqap1ha7c1ib8m"; depends=[Matrix]; }; grpregOverlap = derive2 { name="grpregOverlap"; version="2.2-0"; sha256="1kq8wxpx21irwckndgfkzdy5jgzf7pmcwpclmjzjxznv6cyaikd0"; depends=[grpreg Matrix]; }; grpss = derive2 { name="grpss"; version="3.0.1"; sha256="01bjjhv3vkvn5h363g5a9dlm7kzq10q7ixmrc0kkq5hsbs31vl3x"; depends=[doParallel foreach grpreg MASS]; }; grr = derive2 { name="grr"; version="0.9.5"; sha256="0arbcgrvhkwb5xk4nry1ffg2qj0v8ivhjghdr505ib4357g0c9i9"; depends=[]; }; @@ -7186,7 +7503,7 @@ in with self; { gstat = derive2 { name="gstat"; version="1.1-6"; sha256="0snvga824v1kbd3xp46652bv6drfrgkjsi5zrbdcliqpqz79wk9f"; depends=[FNN lattice sp spacetime zoo]; }; gsubfn = derive2 { name="gsubfn"; version="0.7"; sha256="00j6b8b6xsx6v370h220x233rpk6asca78165y3d48jpwvwisdc9"; depends=[proto]; }; gsw = derive2 { name="gsw"; version="1.0-5"; sha256="0lv4x4is53xybgg205dncizpnqnakqk47b5wgys2kr4ixqc8jipb"; depends=[testthat]; }; - gsynth = derive2 { name="gsynth"; version="1.0.6"; sha256="0fzdlflrl9qlvbzjdspws3naabwyphwqys01wp4wkw5y7whq0mar"; depends=[abind doParallel foreach GGally ggplot2 mvtnorm Rcpp RcppArmadillo]; }; + gsynth = derive2 { name="gsynth"; version="1.0.9"; sha256="1m9s3gymm0z6frfzmz7kv8cbdnla2vp4aam5b2zzcxwflzwbplm3"; depends=[abind doParallel foreach GGally ggplot2 MASS mvtnorm Rcpp RcppArmadillo]; }; gt4ireval = derive2 { name="gt4ireval"; version="2.0"; sha256="1d567iz57xqszm45l1wq4n2qrrmyz8ssll1vllfmncb9ibbnx4f3"; depends=[]; }; gtWAS = derive2 { name="gtWAS"; version="1.0.0"; sha256="1pk7m1apgksbh8a3xb94aj3wp9dbcv5rm6brdcjb5fsgxj7iaq5c"; depends=[]; }; gtable = derive2 { name="gtable"; version="0.2.0"; sha256="0vz7073m0a2q12qzzihrfh5c2kx5jqi5l7z470fxmwqghdllh7l0"; depends=[]; }; @@ -7195,13 +7512,12 @@ in with self; { gtheory = derive2 { name="gtheory"; version="0.1.2"; sha256="1xc1jl69z5csalqk3hx83s53awcl1fjq6p0x2pczhs7dsvwd6lks"; depends=[lme4]; }; gtools = derive2 { name="gtools"; version="3.8.1"; sha256="0f5syk1qq6cjq6hwymvkiyhzwa389z94722v881ipbfqkd2q8505"; depends=[]; }; gtop = derive2 { name="gtop"; version="0.2.0"; sha256="1nvvbf181x0miw3q0r2g0nklz29ljdsd07cazaajfls7pmhi0xw9"; depends=[hts lassoshooting quadprog]; }; - gtrendsR = derive2 { name="gtrendsR"; version="1.4.1"; sha256="08zfh73viv9p1c4qmw3jnywa5xzbm39kfi60whl0w5pvh3q9pksf"; depends=[anytime curl ggplot2 jsonlite]; }; - gtsf = derive2 { name="gtsf"; version="0.1.0"; sha256="11b1rgqzyywpk0qjm575l98irbifgkdlfhhynccils5y8f7vyhf8"; depends=[assertthat dplyr magrittr readr rlang sf stringr tibble]; }; + gtrendsR = derive2 { name="gtrendsR"; version="1.4.2"; sha256="1rph2iv9dirzw1acgq7n56ra20jdynq99biah5v6nybmxdbmznzd"; depends=[anytime curl ggplot2 jsonlite]; }; gtx = derive2 { name="gtx"; version="0.0.8"; sha256="0x71jji2yldi9wpx8d3nldbjfj4930j7zcasayzbylf9094gmg26"; depends=[survival]; }; guess = derive2 { name="guess"; version="0.1"; sha256="198pxi0yipgm9wccpj3y4a0gkibhyxcmb7v5dz7ipzrk44ha5g6j"; depends=[Rsolnp]; }; - gumbel = derive2 { name="gumbel"; version="1.10-1"; sha256="12rkri8bvgjn0ylf1i4k9vpb8mvbasidvx2479kmis2rc1p07qq7"; depends=[]; }; + gumbel = derive2 { name="gumbel"; version="1.10-2"; sha256="0s9idcrssnl683abwky9zvqylciy0b51z935yfvb2bm8b0b0b4ij"; depends=[]; }; gunsales = derive2 { name="gunsales"; version="0.1.2"; sha256="02vz16lhym72vvf48yai1g371wygdlmi63a6ylc147l0b69jgw31"; depends=[data_table dplyr ggplot2 seasonal x13binary zoo]; }; - gustave = derive2 { name="gustave"; version="0.3.0"; sha256="1vijf5x07l507r0li6hs0hhxia83llpykllcrkhm00ms5na7p4jz"; depends=[MASS Matrix]; }; + gustave = derive2 { name="gustave"; version="0.4.0"; sha256="1swnkb1134mnlnfpdchyhmrhr0r5nw90yczsg52hwbhj8hjl2axp"; depends=[Matrix]; }; gutenbergr = derive2 { name="gutenbergr"; version="0.1.4"; sha256="1xf9h0ikfzgq6bzzxa7wih29cgbfk6lgdv041fprxbd9rz38agi9"; depends=[dplyr lazyeval purrr readr stringr urltools]; }; gvc = derive2 { name="gvc"; version="0.5.2"; sha256="0cfvli6ap5kw3agv94d7g7rhmlxd66yyngc7c9pl4fsxf7sm6nx4"; depends=[decompr diagonals]; }; gvcR = derive2 { name="gvcR"; version="0.1.0"; sha256="0r54924b9a65k11p8y3p7jxbvmpb7s7vs87v65hhl98gxacj5hk8"; depends=[dplyr eda4treeR lme4 magrittr]; }; @@ -7214,28 +7530,31 @@ in with self; { gwrr = derive2 { name="gwrr"; version="0.2-1"; sha256="1fjk217pimnmxsimqp9sn02nr1mwy3hw3vsr95skbfsd6vdda14d"; depends=[fields lars]; }; gym = derive2 { name="gym"; version="0.1.0"; sha256="0vcwzgawqwjsf65hr1mbjkz3px8zsibfkn42jpsg39n13jpfjq8v"; depends=[httr jsonlite]; }; gyriq = derive2 { name="gyriq"; version="1.0.2"; sha256="12vbnhianzi4l43czaxrbnbkz1h8lvmwjys0y3c2ml3g6dmwwfji"; depends=[CompQuadForm irlba mvtnorm survival]; }; - h2o = derive2 { name="h2o"; version="3.20.0.2"; sha256="1pchml5d8py4cnii5lmmw65cglixvgwgvl592kl3ix09w34grsps"; depends=[jsonlite RCurl]; }; + h2o = derive2 { name="h2o"; version="3.20.0.8"; sha256="17piklf91fmpf7bl4sk300bwnvsxljad925whs2h12xhqgw3amgv"; depends=[jsonlite RCurl]; }; h2o4gpu = derive2 { name="h2o4gpu"; version="0.2.0"; sha256="06d2rrr27xvnsai6zjiaiw0jjfzdza1cc39c03d6pjkvnh0mqh2c"; depends=[magrittr reticulate]; }; h5 = derive2 { name="h5"; version="0.9.9"; sha256="14p7i1sj24ky87kd7qr3n9fc9l64s0bp0rwbyl6i2x69xn75gpsx"; depends=[Rcpp]; }; - hBayesDM = derive2 { name="hBayesDM"; version="0.5.0"; sha256="174z98jvi04df04lpdxh3j8lmjvgrg287nxfnrcvjkibc0jiss4m"; depends=[ggplot2 loo Rcpp rstan rstantools]; }; - hIRT = derive2 { name="hIRT"; version="0.1.2"; sha256="0pqp6bycr13di1hbi5sqnkiannz2hyg0ysshswv2i9fp0vkhdhqf"; depends=[pryr rms]; }; - hNMF = derive2 { name="hNMF"; version="0.6"; sha256="0a6wf9mhv3b7wb8kimjqm1sj9k8d2j98p7i707bgn5hvmyc39bnf"; depends=[MASS NMF nnls oro_nifti R_matlab rasterImage spatialfil]; }; + hBayesDM = derive2 { name="hBayesDM"; version="0.6.0"; sha256="0il3w1vlw8p02lq5svymv5qafmal784c037dbjk1f6j96lg7i69f"; depends=[ggplot2 loo Rcpp rstan rstantools]; }; + hIRT = derive2 { name="hIRT"; version="0.1.3"; sha256="12rg4srh9s6a72gvb5f7qn9zar6yaqa7p0mfmazfqj353icrannd"; depends=[pryr rms]; }; + hNMF = derive2 { name="hNMF"; version="0.9"; sha256="0qavavgiqah4dv0gz8v5ssz637sd341n9s0pyc232n2jhqpzl0cz"; depends=[MASS NMF nnls oro_nifti R_matlab rasterImage spatialfil]; }; hR = derive2 { name="hR"; version="0.1.3"; sha256="0s7c2aiq58c2zmv25m42cxp5chzkp5grz5bjqrknfkwjy21679h1"; depends=[data_tree reshape2]; }; hSDM = derive2 { name="hSDM"; version="1.4"; sha256="1jq6hdnyv446ng62srip0b48kccf0qw3xqym3fprg74mjdy3inqr"; depends=[coda]; }; haarfisz = derive2 { name="haarfisz"; version="4.5"; sha256="1qmh4glwzqwqx3pvxc71rlcimp1l0plgdf380v9hk0b4gj7g3pkf"; depends=[wavethresh]; }; + hablar = derive2 { name="hablar"; version="0.1.0"; sha256="0l7xb2z41ddm1dlq3f0k00wdskai17wcwfkia1y1k88vqjcakpzg"; depends=[dplyr]; }; hail = derive2 { name="hail"; version="0.1.1"; sha256="1nrc9msqyy5iq2i6p8875anbqswxl2z6vdd4hvihnl22qh5fnbvh"; depends=[]; }; hamlet = derive2 { name="hamlet"; version="0.9.6"; sha256="076fh28grlrv38qywshi79m84jsz1ck9k4n0rg4svvr3gqkdbcn2"; depends=[]; }; hansard = derive2 { name="hansard"; version="0.6.0"; sha256="13h68b300c4lkqbl5gw4hkqcbb2ikvan4hx8092ds995514rg4x8"; depends=[dplyr httr jsonlite lubridate stringi tibble tidyr]; }; hapassoc = derive2 { name="hapassoc"; version="1.2-8"; sha256="0qs5jl0snzfchgpp6pabncwywxcmi743g91jvjiyyzw0lw85yv4s"; depends=[]; }; haplo_stats = derive2 { name="haplo.stats"; version="1.7.9"; sha256="19kxascqq5qz0zdxx0w837ji207y1z2ggxkl4vmlbay03k2dw2mx"; depends=[rms]; }; - haploR = derive2 { name="haploR"; version="2.0.3"; sha256="0m2pqrg1734x2ab19dqf5mqgrzibd2l5g6800if0a92bi51q67bx"; depends=[DT httr plyr RUnit tibble XML]; }; + haploR = derive2 { name="haploR"; version="2.0.6"; sha256="0f0i687wrsmli1z48vghwbd4595nwvv2bajnn0jkyi9fw9r2vnn0"; depends=[DT httr plyr RUnit tibble XML]; }; haploReconstruct = derive2 { name="haploReconstruct"; version="0.1.2"; sha256="17zdl9c3yy6jdzv1wp0ailbga456pmmybzxh3dldymhj8qf32cx0"; depends=[data_table dbscan foreach gplots igraph matrixStats stringi zoo]; }; haplotyper = derive2 { name="haplotyper"; version="0.1"; sha256="0pcshlh29c4zazhkcq4371kqh9inrbx494y5a1qb1k2c92fkax31"; depends=[]; }; haplotypes = derive2 { name="haplotypes"; version="1.0"; sha256="0pwihfi6g4jrnkha9s9rksq0fc8j04mlrwf0295rmy49y19rg84s"; depends=[network]; }; happybiRthday = derive2 { name="happybiRthday"; version="0.0.1"; sha256="0rrvi5kx09p74xwxvqcwibbh4qjlk4jxb89grx74chjxk9ak2yv8"; depends=[data_table dplyr gh lubridate tidyr]; }; + happytime = derive2 { name="happytime"; version="0.1.0"; sha256="03iblwb6w2dh9sibfi4nlswidck13hzsn7123838zp4sxfnrp041"; depends=[]; }; hapsim = derive2 { name="hapsim"; version="0.31"; sha256="0jw6iw89d4y8wjy58biv40szp123ql7frz1mmdjdxljmwaby963h"; depends=[MASS]; }; harmonicmeanp = derive2 { name="harmonicmeanp"; version="1.0"; sha256="071ysgyi8daq8q1vqzgypkz4bgaxr0iw4djv906vkfx5ywihr768"; depends=[FMStable]; }; harrietr = derive2 { name="harrietr"; version="0.2.3"; sha256="0n6vsqysj4ijh06z6nqmj8x1z4w9711dxhbfp8p8fwi0l75pj0cj"; depends=[ape dplyr ggtree lazyeval magrittr rlang tidyr]; }; + harrypotter = derive2 { name="harrypotter"; version="0.1.0"; sha256="0h02rli2l42a2vjgrw7fqxib31pyqcyhqam499bpybk5crqnpffx"; depends=[ggplot2 gridExtra MASS]; }; harvestr = derive2 { name="harvestr"; version="0.7.1"; sha256="0xgxzbfbc33asfm8sl2y60ki6bwgd6vdh9nz466crkx7m9lsvll8"; depends=[digest foreach plyr]; }; hash = derive2 { name="hash"; version="2.2.6"; sha256="0mkx59bmni3b283znvbndnkbar85fzavzdfgmwrhskidsqcz34yz"; depends=[]; }; hashFunction = derive2 { name="hashFunction"; version="1.0"; sha256="1v57xj8xwv6xhxvgp0zxgvs5vcjw8z5k2ciwbn0jxf4ilyd66cgj"; depends=[]; }; @@ -7258,29 +7577,32 @@ in with self; { hda = derive2 { name="hda"; version="0.2-14"; sha256="0azfxyws7yslcqplfddmdp5ngk91j5h7llvrg77yh5z0kkd09j1b"; depends=[e1071]; }; hdbinseg = derive2 { name="hdbinseg"; version="1.0.1"; sha256="0fy9cqrygsnxkb3nxg56md19svrvkbijpxkqfk9p18cj5ibwrq94"; depends=[doParallel foreach iterators Rcpp RcppArmadillo]; }; hddplot = derive2 { name="hddplot"; version="0.59"; sha256="18llkpawm12cjxlcrlra60m16virfpjqiaqkvy9mb3wq1zif61rh"; depends=[MASS multtest]; }; - hdf5r = derive2 { name="hdf5r"; version="1.0.0"; sha256="1s6p4cj909kc635fh5xpl87bqlcdj3dn3r1wk5g40abimk2b0pva"; depends=[bit64 R6]; }; + hddtools = derive2 { name="hddtools"; version="0.8.2"; sha256="02gbqlzwxc77gllgz9sf2s73y4ngyb4warabdfyj2sm2g7jl6y12"; depends=[gdata Hmisc raster RCurl rgdal rnrfa sp stringr tibble XML zoo]; }; + hdf5r = derive2 { name="hdf5r"; version="1.0.1"; sha256="0h222q80li8rs3cv4c5lvv3g91ygd51w43ay6fwyk9q9d315vwrj"; depends=[bit64 R6]; }; hdi = derive2 { name="hdi"; version="0.1-6"; sha256="1lzy4jcz14j1qi6z4j1sq7z3z75n8jygnzlvqjf45vn1sqil17cq"; depends=[glmnet linprog MASS scalreg]; }; hdlm = derive2 { name="hdlm"; version="1.3.1"; sha256="1zl6bksw0apkmn5shf8qjpxjyx6vb40dc4m4db76hhn5nhcp10ic"; depends=[foreach glmnet iterators MASS Matrix]; }; hdm = derive2 { name="hdm"; version="0.2.3"; sha256="0nj7pbkygzbiraw1b3pqv3bnkjhi1a0h48q0zgkcq8y79kj2f8cl"; depends=[checkmate Formula ggplot2 glmnet MASS]; }; - hdme = derive2 { name="hdme"; version="0.2.0"; sha256="03fmn7yxgx56329923pzqkjfrdg0aw2i7jj1sdf0cphzmi7m426n"; depends=[ggplot2 glmnet Rcpp RcppArmadillo Rdpack]; }; + hdme = derive2 { name="hdme"; version="0.2.1"; sha256="0kcpc0ygjk8d6v099x1m5hi6dbapjcc0lzjsg9779i6bbf43mls2"; depends=[ggplot2 glmnet Rcpp RcppArmadillo Rdpack]; }; hdnom = derive2 { name="hdnom"; version="5.0"; sha256="0g7l5km18j11qfw8iq9ybl8lzdq6fk2g7cjc2yjsm3ava60n4xqh"; depends=[foreach ggplot2 glmnet gridExtra ncvreg penalized rms survAUC survival]; }; hdpca = derive2 { name="hdpca"; version="1.0.0"; sha256="1sv7caw4nhpcvsb7fxpvf2b5zskvfsv004hrqc51b5jx4fsc7y92"; depends=[boot lpSolve]; }; hdrcde = derive2 { name="hdrcde"; version="3.2"; sha256="1901mg2k2ch9fzn1n9k0kmxkgd1m4pxvrda7mv0mp64nf4mx43xw"; depends=[ash ggplot2 KernSmooth ks locfit RColorBrewer]; }; hds = derive2 { name="hds"; version="0.8.1"; sha256="1smg5ixrl7f2x3wn7s5i26dyadn5sigpf4jsk236z1bhnz617ax4"; depends=[survival tensor]; }; - healthcareai = derive2 { name="healthcareai"; version="2.1.0"; sha256="1bzlgdf3gfgayw0axiwhbm9x2rqfyibkwymw2mm28fdz65r4n73i"; depends=[broom caret cowplot data_table dbplyr dplyr e1071 ggplot2 glmnet lubridate MLmetrics purrr ranger recipes rlang stringr tibble tidyr xgboost]; }; + healthcareai = derive2 { name="healthcareai"; version="2.2.0"; sha256="1i1xnxd2v8qbv8pqn7w3ivh1yv4nvxm5llwhxd24gfzqkxck7c3w"; depends=[broom caret cowplot data_table dbplyr dplyr e1071 ggplot2 glmnet lubridate MLmetrics purrr ranger recipes rlang ROCR stringr tibble tidyr xgboost]; }; heatex = derive2 { name="heatex"; version="1.0"; sha256="0c7bxblq24m80yi24gmrqqlcw8jh0lb749adsh51yr6nzpap6i9n"; depends=[]; }; heatmap_plus = derive2 { name="heatmap.plus"; version="1.3"; sha256="0rzffm15a51b7l55k0krk6w7v8czy3vpwz1qmbybr7av0pln7wn3"; depends=[]; }; heatmap3 = derive2 { name="heatmap3"; version="1.1.1"; sha256="14zkij0gr9awzic71k2j7pniamkywfvwrifdk7jbds70zsi30ph5"; depends=[fastcluster]; }; heatmapFit = derive2 { name="heatmapFit"; version="2.0.4"; sha256="1rswp1wp58f21fpyjybcvvmnn53kr54ij83hp05qbvl7yn1fsnrb"; depends=[]; }; - heatmaply = derive2 { name="heatmaply"; version="0.15.0"; sha256="0314nmlfwvgb9xmfvnw15l4is59dq1yq8i9461bykhj26jppyib2"; depends=[assertthat colorspace dendextend ggplot2 gplots htmlwidgets magrittr plotly RColorBrewer reshape2 scales seriation viridis webshot]; }; - heatwaveR = derive2 { name="heatwaveR"; version="0.3.0"; sha256="1pfbhjnky0403hwjy29ady4q41vsgk3m3mwdki5ybkp9hx0c3zm3"; depends=[data_table dplyr ggplot2 lubridate Rcpp RcppArmadillo RcppRoll tibble zoo]; }; + heatmaply = derive2 { name="heatmaply"; version="0.15.2"; sha256="0h8s5djzj4mrmaswlcaap6jbwxrkbzc43bbqik3qf8vrqz335w04"; depends=[assertthat colorspace dendextend ggplot2 gplots htmlwidgets magrittr plotly RColorBrewer reshape2 scales seriation viridis webshot]; }; + heatwaveR = derive2 { name="heatwaveR"; version="0.3.3"; sha256="0j2p1lndzsp90hcnf2w4wn3brjs1si1ag1qk8n1jxy3c3wlapiak"; depends=[data_table dplyr ggplot2 lubridate Rcpp RcppArmadillo RcppRoll tibble zoo]; }; heavy = derive2 { name="heavy"; version="0.38.19"; sha256="15bg2qqkslkqfnsq3ixbgmq72xagh8laji0265l06xgf2l6045kx"; depends=[]; }; + hedgehog = derive2 { name="hedgehog"; version="0.1"; sha256="1mvjnm2zlc4pvw9vnhxr0dj1g1sfqvlrnnhcipzfbvr147yan9l5"; depends=[rlang testthat]; }; heemod = derive2 { name="heemod"; version="0.9.2"; sha256="0qln5c4m11vxpsa0l07qrzs006b05hsl342pc5dgz0hwdpn5dd9j"; depends=[dplyr ggplot2 lazyeval memoise mvnfast plyr pryr tibble]; }; hei = derive2 { name="hei"; version="0.1.0"; sha256="1cvwdkm5c9p3cfgpgdj0r7222mzz1jghq2i5f20xh3786gx05sqd"; depends=[nhanesA]; }; heims = derive2 { name="heims"; version="0.4.0"; sha256="0vnq31jwn09grni4gdhf1hzd87b62as4f65b2qw7ky6mi38ahr5d"; depends=[bit64 data_table fastmatch hutils lubridate magrittr]; }; helixvis = derive2 { name="helixvis"; version="0.9.1"; sha256="1xc55wyky3gnbs4gkmn1v74vgj4azriwlyd4psmc644w0rnajfjc"; depends=[plotrix]; }; hellno = derive2 { name="hellno"; version="0.0.1"; sha256="1j787rw9hh75bvkckmlz5xkgwc22gd7si3mgjd7v60dd6lykfa88"; depends=[]; }; helloJavaWorld = derive2 { name="helloJavaWorld"; version="0.0-9"; sha256="1a8yxja54iqdy2k8bicrcx1y3rkgslas03is4v78yhbz42c9fi8s"; depends=[rJava]; }; + helminthR = derive2 { name="helminthR"; version="1.0.6"; sha256="0h4r0f6aaxh0bgcmrvbsh7vkw2jhw1xqnnx9bzqai0s842697m88"; depends=[ggmap httr knitr magrittr plyr rmarkdown rvest xml2]; }; helsinki = derive2 { name="helsinki"; version="0.9.29"; sha256="0bn5iyxjn9qs6f0dmhv51ssayywbx1rayh80zbzk0gsm94nhs0d9"; depends=[maptools RCurl rjson sp]; }; heplots = derive2 { name="heplots"; version="1.3-5"; sha256="1vyhfkp66gi17jni3gsbv9kn1s0n00qigr13q8xbzbgylz5jjiln"; depends=[car MASS]; }; here = derive2 { name="here"; version="0.1"; sha256="1vb5dxqdpimy51q1gjsypyq14p2hhvj7wsvh6g35pj1g03cyg9av"; depends=[rprojroot]; }; @@ -7289,7 +7611,7 @@ in with self; { hermite = derive2 { name="hermite"; version="1.1.2"; sha256="0j9s7ayvbvmgwybrvf703b72qbn8gskb105pis19ig2sslllzda3"; depends=[maxLik]; }; hesim = derive2 { name="hesim"; version="0.1.0"; sha256="002phncl1glv3c3gwp9ifpk56j06rka26a3774xlj3zcs6izglns"; depends=[data_table Rcpp RcppArmadillo]; }; het_test = derive2 { name="het.test"; version="0.1"; sha256="08kxp81dx32anh0k5b65x7w7madwnn9hiabdrk6ck6b6mx37x26v"; depends=[vars]; }; - hetGP = derive2 { name="hetGP"; version="1.0.2"; sha256="0dffkn11pm1x5jafc7yzy0jh4c2qqipfzhw205qiqxk5gny185k8"; depends=[DiceDesign MASS Rcpp]; }; + hetGP = derive2 { name="hetGP"; version="1.1.0"; sha256="1m752a250msayqz8kwdi1r6lrww9pmc6qb6l9hlnfl2ds3qiks83"; depends=[DiceDesign MASS Rcpp]; }; hetmeta = derive2 { name="hetmeta"; version="0.1.0"; sha256="023bdjsv0ibisz47vaap9yamzjna4hhndk3haw2g1cm92wnrdra5"; depends=[metafor]; }; hett = derive2 { name="hett"; version="0.3-2"; sha256="1kmspw0738pdall5scmllsa79dynliai2glk1h5rzm4030r5rd6j"; depends=[lattice MASS]; }; heuristica = derive2 { name="heuristica"; version="1.0.1"; sha256="1myivlqw6a8wh97ma9lrpgvaqb0vn4kj8yp9r4z5vc4pxgmm48g6"; depends=[Hmisc]; }; @@ -7300,11 +7622,12 @@ in with self; { hflights = derive2 { name="hflights"; version="0.1"; sha256="1rb6finck13i6949i6hsgfk90q4ybxh1m3is2mlw2m6087bpzfbd"; depends=[]; }; hgam = derive2 { name="hgam"; version="0.1-2"; sha256="1flcc67n8kbh9m5phdfl587xg1x935zbp305y0gdmkc8vpkiwpcf"; depends=[grplasso lattice rgl]; }; hglasso = derive2 { name="hglasso"; version="1.2"; sha256="1qq41ma33wz7qjs5zx72yvngpsiq62z9sd6d5hvvl83brq0fcr4b"; depends=[fields glasso igraph mvtnorm]; }; - hglm = derive2 { name="hglm"; version="2.1-1"; sha256="1vr1332db60fqbck0nplfw5dnxpb7sa3irh80k2hyx4aw74ckr2k"; depends=[hglm_data MASS Matrix]; }; + hglm = derive2 { name="hglm"; version="2.2-0"; sha256="0gb61yb1kk4dsb4i6sdh0r2ba7byl7hm5fqy8f12v1l4q40ymwq7"; depends=[hglm_data MASS Matrix]; }; hglm_data = derive2 { name="hglm.data"; version="1.0-0"; sha256="1hrq1jac658z5xjsg03nfkb4kwm9z44bhciv5chk74ww8gjr9j9q"; depends=[MASS Matrix]; }; hgm = derive2 { name="hgm"; version="1.17"; sha256="11hv4pfv3gqiargvwvrxqzfji75j291w1nilawf8yjc3isnc4wjp"; depends=[deSolve]; }; + hgutils = derive2 { name="hgutils"; version="0.2.3"; sha256="12y2wxyvd4kjc548baha5mfn3r4ci4a0cyr7d8wh5hldsz6vkg08"; depends=[crayon limSolve magrittr stringr XML]; }; hhh4contacts = derive2 { name="hhh4contacts"; version="0.13.0"; sha256="17f31xhh6kk7sx5d5dvpwpvl72wd45zgb4fcpdayx3yrm719csz9"; depends=[surveillance]; }; - hhi = derive2 { name="hhi"; version="1.1.0"; sha256="0f0b6a2zr2nipcx4p8n2wx088kndh6bd150f80619kjfizr55x2d"; depends=[ggplot2]; }; + hhi = derive2 { name="hhi"; version="1.2.0"; sha256="1yl52c3nqdi8v60sr01l0vv8359803dm2i4c9ifazgj3h3a4h0yp"; depends=[ggplot2]; }; hht = derive2 { name="hht"; version="2.1.3"; sha256="022a8zz2m34q89h29jglfj21knlqd8dwi85qmsi78ly1vacnzap8"; depends=[EMD fields spatstat]; }; hiPOD = derive2 { name="hiPOD"; version="1.0"; sha256="1i15ickz2s0kffh99qq30pl5hsl0lbj0kp55jnbv4x72hndzhmla"; depends=[rgl]; }; hiddenf = derive2 { name="hiddenf"; version="2.0"; sha256="0shc1kfiq527mkc5i97zcm51hsvknnhjg7dyfvbfqyk145v6sz00"; depends=[]; }; @@ -7317,7 +7640,7 @@ in with self; { hierfstat = derive2 { name="hierfstat"; version="0.04-22"; sha256="1fav2v2996v5kb1ffa6v5wxfm921syxg6as034vd3j4jfhdibyfx"; depends=[ade4 adegenet gtools]; }; hiertest = derive2 { name="hiertest"; version="1.1"; sha256="17maf1w4vkqknxff3f00fzv136j3dbbigyzl4vq4sln9j27w10r3"; depends=[]; }; highD2pop = derive2 { name="highD2pop"; version="1.0"; sha256="1s4v6m2d3vzvxsgmjzczv1zj3kv3ygvv6gbkkbjwsdhkvc1rdmf0"; depends=[fastclime]; }; - highSCREEN = derive2 { name="highSCREEN"; version="0.2"; sha256="0lgwxavshqd826g1zmjakhxlbngbhrc36nc8wsh9nakklx4nq9g4"; depends=[gplots]; }; + highSCREEN = derive2 { name="highSCREEN"; version="0.3"; sha256="179l82n7l7dfn40k6zgigw56ggwqyi34gllc2wvcw3yvfnd3l7s4"; depends=[gplots]; }; highTtest = derive2 { name="highTtest"; version="1.1"; sha256="18hgxlr0y8y1d4ldqmfcg4536lhyn5p6w88sq1vj74qr5wzydga1"; depends=[]; }; highcharter = derive2 { name="highcharter"; version="0.5.0"; sha256="1myypff80mxcgc3j0sflalhqz344c2zz2p90aarli1pbys9v8ynp"; depends=[assertthat broom dplyr htmltools htmlwidgets igraph jsonlite lubridate magrittr purrr quantmod rlist stringr tibble tidyr xts zoo]; }; highfrequency = derive2 { name="highfrequency"; version="0.5.3"; sha256="1d218504ghg8d3cwmsxwkznxpr2wy5li062i2lynbxzrhrk59i0l"; depends=[chron cubature MASS mvtnorm numDeriv robustbase sandwich timeDate xts zoo]; }; @@ -7325,12 +7648,13 @@ in with self; { highlightHTML = derive2 { name="highlightHTML"; version="0.2.1"; sha256="06k2idx9aadjd6xp6kadm9jh7ap1hwg7vh0bc8vw9ll82wcp1nv1"; depends=[]; }; highmean = derive2 { name="highmean"; version="3.0"; sha256="1lq7z0l1737j4wvsy7951405afylyywp7vf2i7girzh459fdfzpc"; depends=[MASS mnormt mvtnorm]; }; highr = derive2 { name="highr"; version="0.7"; sha256="1dzknqk4x7iiiq1jkh9bqm5qcvs7mbqxbkn5955050payavabfya"; depends=[]; }; - highriskzone = derive2 { name="highriskzone"; version="1.4-2"; sha256="1q9y34nj73kg5y6qy4kb023vyzbdb0f6x23asq20bj5pmz2l25y1"; depends=[deldir fields ks Matrix mvtnorm rgeos spatstat]; }; + highriskzone = derive2 { name="highriskzone"; version="1.4.5"; sha256="09ad025ydpfsrkcfqsfm4cj6lk8shrdh6vyya7isqwrd5jfyf1qc"; depends=[deldir fields ks maps Matrix mvtnorm rgeos spatstat]; }; higrad = derive2 { name="higrad"; version="0.1.0"; sha256="0q9av8qyvmvgy6a3l7svcmbkjjgnp4iny1cld4g3qsbaz3yp3jaj"; depends=[Matrix]; }; hillmakeR = derive2 { name="hillmakeR"; version="0.2"; sha256="1baynibgn4xqmpsxna8irggxvdc484mq5nza00rwg58vh1bc7wzq"; depends=[]; }; hindexcalculator = derive2 { name="hindexcalculator"; version="1.0.0"; sha256="06b4dn629avmnyqxb0l39m00wz9cg9dddmm6qhgwgnzlxh14ifgk"; depends=[]; }; hint = derive2 { name="hint"; version="0.1-1"; sha256="1n18j2hcb1qynhsln10nzryi20l5aqhr7i1aanww10y5dz573zi3"; depends=[]; }; - hisse = derive2 { name="hisse"; version="1.8.5"; sha256="1lhxj0cz3sdidpafll64fg1797y0472yxcr21dp2b83qbygkwfgl"; depends=[ape data_table deSolve GenSA nloptr phytools subplex]; }; + hipread = derive2 { name="hipread"; version="0.1.1"; sha256="1x3h52qjjv44ssifhz73xc55vv1wjrsmc021f9ida14m2dy3nwfv"; depends=[BH R6 Rcpp rlang tibble]; }; + hisse = derive2 { name="hisse"; version="1.8.8"; sha256="1r389916gmcgmg6xjm4mmqf18k0p90wdlcifwv4qjdf2c39xqjwp"; depends=[ape data_table deSolve diversitree GenSA nloptr phytools plotrix subplex]; }; histmdl = derive2 { name="histmdl"; version="0.7-1"; sha256="0k6l3pfjzlgpxv55vy8dg4sl8zhh0460xcfszwp2k9sbzanwaamp"; depends=[]; }; histogram = derive2 { name="histogram"; version="0.0-24"; sha256="1jihw92zi5a4dj6lzm1qvkynv9fp6j5iy83g8rzikp276x63nb62"; depends=[]; }; historydata = derive2 { name="historydata"; version="0.1"; sha256="1h69x3iig542d43p9zm8x83p4dq48iwsw606j4fndnqhx99vzkw6"; depends=[]; }; @@ -7349,7 +7673,7 @@ in with self; { hnp = derive2 { name="hnp"; version="1.2-6"; sha256="12cbc353ipr2rcc93skf1766g38j1pvpdkqk3cswv0cxsjl2x7pl"; depends=[MASS]; }; hoa = derive2 { name="hoa"; version="2.1.4"; sha256="15klcpmja4afwmpfxrxgrfis0vj7fil8k15jc3p0lqz3dhvq0dvf"; depends=[statmod survival]; }; hoardeR = derive2 { name="hoardeR"; version="0.9.2"; sha256="0sss3ki2w0aqyp084pprycw8d8vgm60z41iq6g9nxhqhr9xy5kdw"; depends=[bamsignals Biostrings data_table GenomicRanges GenomicTools httr IRanges MASS R_utils RCurl Rsamtools seqinr stringr XML]; }; - hoardr = derive2 { name="hoardr"; version="0.2.0"; sha256="13bjycnr1v524c5wxigdd3kn8bx1sgwdqb10hbmbyjxffabacafr"; depends=[digest R6 rappdirs]; }; + hoardr = derive2 { name="hoardr"; version="0.5.0"; sha256="15s0803cgh0gxxrz4ipicyzgy528sj6g9pc453cdcg079vd8dw12"; depends=[digest R6 rappdirs]; }; hogsvdR = derive2 { name="hogsvdR"; version="0.1"; sha256="0ji4j9fzwnacdqbzrj5zphak5nsin7vcja15w48fik8hv5w6qs46"; depends=[MASS Rcpp RcppArmadillo]; }; holdem = derive2 { name="holdem"; version="1.2"; sha256="0mcb4civ4p7apm7kfl88apvb4yznsmn4hggfggmjhs046g6bi2p7"; depends=[]; }; homals = derive2 { name="homals"; version="1.0-8"; sha256="0gad0jmflw5zmzf9hk5qqmxxpbncm9gngsi24i3rgiz7565kli1r"; depends=[ape rgl scatterplot3d]; }; @@ -7369,10 +7693,12 @@ in with self; { housingData = derive2 { name="housingData"; version="0.3.0"; sha256="0ngfx2vjx705xixzpz0rgx1481cr2szj4yfi5g7ma1hhivddl7d1"; depends=[]; }; howmany = derive2 { name="howmany"; version="0.3-1"; sha256="045ck8qahfg2swbgyf7dpl32ryq1m4sbalhr7m5qdgpm62vz8h7f"; depends=[]; }; hpcwld = derive2 { name="hpcwld"; version="0.5"; sha256="17k4mw41gygwgvh7h78m0jgzh1bivrvrsr8lgxxw3sbkw88lwb40"; depends=[multicool partitions]; }; + hpiR = derive2 { name="hpiR"; version="0.2.0"; sha256="0l9x0w6a3ssqcysw8bwmml541nags3b1wxbvipg4rqjfazpdxji4"; depends=[caret dplyr forecast ggplot2 gridExtra imputeTS knitr lubridate magrittr MASS plyr purrr rlang robustbase zoo]; }; hpoPlot = derive2 { name="hpoPlot"; version="2.4"; sha256="176bf93gjwbi2z7nz81w4aycwax6f7jxvs3236zrmf0f0f4m7bkc"; depends=[functional magrittr Rgraphviz]; }; hqmisc = derive2 { name="hqmisc"; version="0.1-1"; sha256="0jcy2hb3dmzf9j4n92aq7247mx9w7n30wpsx0dkchqnjwlqwwncw"; depends=[]; }; hqreg = derive2 { name="hqreg"; version="1.4"; sha256="1j6zp3rmpjx409vm7kq159mlawg87wsq0ypdkan34yxxv9py2jmi"; depends=[]; }; - hrbrthemes = derive2 { name="hrbrthemes"; version="0.5.0"; sha256="0bayblwwf4fwjc21c7zhdipvfxycfil4xkja0dirvvhk5zwszgnx"; depends=[extrafont ggplot2 htmltools knitr magrittr rmarkdown scales]; }; + hrIPW = derive2 { name="hrIPW"; version="0.1.2"; sha256="0bgcz4v9cj3aajcp25bv4g7magj54n86qy5nmgr6kqm8sspy260x"; depends=[survival]; }; + hrbrthemes = derive2 { name="hrbrthemes"; version="0.5.0.1"; sha256="14nqv809i5cdmbzdpvcppf2r1qsjv0f4lk5w6s4sjinaf68rzpzg"; depends=[extrafont ggplot2 htmltools knitr magrittr rmarkdown scales]; }; hsdar = derive2 { name="hsdar"; version="0.7.1"; sha256="1bjcgkqhjcrysyh0l1w3r1zzmv3sdlb7xzxdc504z1viy1ayh6ly"; depends=[caret raster rgdal signal]; }; hsicCCA = derive2 { name="hsicCCA"; version="1.0"; sha256="1d4lkjrihwhl3jrsj7250ccd90nfwpllyavc3mp15fhcy2jnjci8"; depends=[]; }; hsm = derive2 { name="hsm"; version="0.2.0"; sha256="066shjikqrrkxpnra4zknax1a0sk5nx9ms1br58vwqqvqq479rym"; depends=[]; }; @@ -7384,8 +7710,8 @@ in with self; { htmltab = derive2 { name="htmltab"; version="0.7.1"; sha256="0lymagm7z6zn0ddygqxi831ikk74112lkqkbvs5j1djhmr359ajc"; depends=[httr XML]; }; htmltidy = derive2 { name="htmltidy"; version="0.4.0"; sha256="090rj1fzdsa8m4g33d4mx92dm8afh173i4hqa4zym8c909jwh9qn"; depends=[htmltools htmlwidgets Rcpp XML xml2]; }; htmltools = derive2 { name="htmltools"; version="0.3.6"; sha256="18k8r1s8sz1jy7dkz35n69wj20xhmllr53xmwb4pdzf2z61gpbs4"; depends=[digest Rcpp]; }; - htmlwidgets = derive2 { name="htmlwidgets"; version="1.2"; sha256="04c4d0mfcy3dkdlbxnaccpdgxvyxfdwfmmh5djim6v9hyg0j2z8s"; depends=[htmltools jsonlite yaml]; }; - htree = derive2 { name="htree"; version="1.0.0"; sha256="1yw29rk752g3sc50igcgnxfsp7ydcmrlwpacch5c8yjg5di06ymb"; depends=[]; }; + htmlwidgets = derive2 { name="htmlwidgets"; version="1.3"; sha256="04jsdh14l2zifbjpbbh23w7bxz1wpsas0zb2gy2zwv4yqamzzr7i"; depends=[htmltools jsonlite yaml]; }; + htree = derive2 { name="htree"; version="2.0.0"; sha256="15bi5c2p4aghihp3k12s78447j2x9hbsaq56b5lc8jmd1vf0jdwb"; depends=[]; }; hts = derive2 { name="hts"; version="5.1.5"; sha256="0mvsxrk7wkfn81hbk8a80fckiqiwdbvhq42k7c6lm69gamnbak2f"; depends=[forecast Matrix matrixcalc Rcpp RcppEigen SparseM]; }; httk = derive2 { name="httk"; version="1.8"; sha256="1snwqqvacxgl4cyadx5la87xh4kxiqpdmyq4szqz5r1aq2sxrr03"; depends=[data_table deSolve msm mvtnorm survey truncnorm]; }; httpRequest = derive2 { name="httpRequest"; version="0.0.10"; sha256="0f6mksy38p9nklsr44ki7a79df1f28jwn2jfyb6f9kbjzh98746j"; depends=[]; }; @@ -7393,7 +7719,7 @@ in with self; { httpcode = derive2 { name="httpcode"; version="0.2.0"; sha256="06k853ihwzkcx4z3jzazpb03p91frqkwz18jy4fwr8j2nwyqbhgv"; depends=[]; }; httping = derive2 { name="httping"; version="0.2.0"; sha256="0hdcf51yak8yagy4xj9cyck934lgmvpkd08jvlql33ir5mqvvv3i"; depends=[httpcode httr jsonlite magrittr pryr]; }; httptest = derive2 { name="httptest"; version="3.1.0"; sha256="1r0grzlblyri526a3pp2n8v9zf23kf41i6kl64qmkrq1bamr0m17"; depends=[digest httr jsonlite testthat]; }; - httpuv = derive2 { name="httpuv"; version="1.4.4.2"; sha256="03lc8j98c6fx9g431is0q5zm4y4phjg99h7w6y6c38cjg7kphr72"; depends=[BH later promises Rcpp]; }; + httpuv = derive2 { name="httpuv"; version="1.4.5"; sha256="1ddpcarzf694h0gy5pdz7l5glqfv4hr9dmxb4vw7yqd0bga174gi"; depends=[BH later promises Rcpp]; }; httr = derive2 { name="httr"; version="1.3.1"; sha256="0n7jz2digbgv48rbr9vmzv4vmf4rahl9jjy31izs7sxj4rs4s4r2"; depends=[curl jsonlite mime openssl R6]; }; hues = derive2 { name="hues"; version="0.1"; sha256="0b6y4ld242fqzx4ccxzk4i4zbx7myk7v3a03r0klgbh2mmw3ixm0"; depends=[colorspace]; }; huge = derive2 { name="huge"; version="1.2.7"; sha256="134d951x42vy9dcmf155fbvik2934nh6qm2w5jlx3x2c6cf7faq4"; depends=[igraph lattice MASS Matrix]; }; @@ -7405,11 +7731,11 @@ in with self; { hunspell = derive2 { name="hunspell"; version="2.9"; sha256="10186544s6nyd2ba470idxrxsl788dkmr1g1ri8x2n1lky9zmrik"; depends=[digest Rcpp]; }; hurdlr = derive2 { name="hurdlr"; version="0.1"; sha256="1ryrqsxa07isxv2zx156bcn36d4yjvwpirb8jqcmqm97q7rmihmq"; depends=[]; }; hurricaneexposure = derive2 { name="hurricaneexposure"; version="0.0.1"; sha256="1j6srqnmdhmg1yg06nqxapdrd9p3yrfs01z0sk43dvjq4dmwmrjr"; depends=[data_table dplyr ggmap ggplot2 lazyeval lubridate maps purrr RColorBrewer stringr tidyr]; }; - hutils = derive2 { name="hutils"; version="1.1.0"; sha256="05vywa9lgnpvrkly5mbc4wlxc5v7cz58zgm6wynbxpc58m6smi73"; depends=[data_table fastmatch magrittr]; }; - huxtable = derive2 { name="huxtable"; version="4.0.1"; sha256="1z93py9nnfpvqkackgxvr2pnd642zcvqks9x01m4nh6dsbh52bs7"; depends=[assertthat dplyr glue htmltools knitr rmarkdown stringr tibble tidyselect]; }; + hutils = derive2 { name="hutils"; version="1.2.0"; sha256="0yfy5mydy0il7jlm2ddn2cmja5advshazxjrfa5kgqpc4aqx0avs"; depends=[data_table fastmatch magrittr]; }; + huxtable = derive2 { name="huxtable"; version="4.2.1"; sha256="1x6w773jaxj8d2ijdpd15lci7z8i8hhc1ch9af5vb9ysps4p07j6"; depends=[assertthat glue memoise stringr tibble tidyselect]; }; hwde = derive2 { name="hwde"; version="0.67"; sha256="0wb2f9i5qi7w77ygh8bvydfpr7j5x8dyvnnhdkajaz0wdcpkyaqy"; depends=[]; }; hwriter = derive2 { name="hwriter"; version="1.3.2"; sha256="0arjsz854rfkfqhgvpqbm9lfni97dcjs66isdsfvwfd2wz932dbb"; depends=[]; }; - hwwntest = derive2 { name="hwwntest"; version="1.3"; sha256="1b5wfbiwc542vlmn0l2aka75ss1673z8bcszfrlibg9wwqjxlwk5"; depends=[polynom wavethresh]; }; + hwwntest = derive2 { name="hwwntest"; version="1.3.1"; sha256="1mz5svx5vbisdl5wxdnwip13pq4slyigc7j52l526rr9n0l0pr5v"; depends=[polynom wavethresh]; }; hybridEnsemble = derive2 { name="hybridEnsemble"; version="1.0.0"; sha256="08y11cmlhnl456wxsvh3ll1f9ywkmgqjwlwr3v3qhm54nlanwvkr"; depends=[ada AUC e1071 FNN genalg GenSA glmnet kernelFactory NMOF nnet nnls pso quadprog randomForest reportr Rmalschains ROCR rotationForest rpart soma tabuSearch]; }; hybridHclust = derive2 { name="hybridHclust"; version="1.0-5"; sha256="0w06vna66hlmvx10dl1l0nzbnxkd634gxjz26w015f83vpmfc5vz"; depends=[cluster]; }; hybridModels = derive2 { name="hybridModels"; version="0.3.5"; sha256="0bg065j3y3xwxlib9i78pa0ghlblyp4qq1kmh3j02w8xi00rnrs6"; depends=[doParallel foreach ggplot2 GillespieSSA reshape2 stringr]; }; @@ -7419,19 +7745,19 @@ in with self; { hydroTSM = derive2 { name="hydroTSM"; version="0.5-1"; sha256="053id9ldr10mafww3vas9fiy16lz0n1mqqfg6wjsbm5r15jkz3ha"; depends=[automap e1071 gstat lattice maptools sp xts zoo]; }; hydrogeo = derive2 { name="hydrogeo"; version="0.6-1"; sha256="16m6yvr9yhvb0vdh9pqd6gzf3h9km7gd89y6risjddv6g83469k8"; depends=[]; }; hydrolinks = derive2 { name="hydrolinks"; version="0.10.0"; sha256="0004a03bx9l9wq6zdz5az41rjxv1ka4qmnxk6ksy8i7365wsay88"; depends=[dbplyr dplyr httr rappdirs RSQLite sf units]; }; - hydroscoper = derive2 { name="hydroscoper"; version="1.0.0"; sha256="09dcn2wfd06waxzq8cv8lxyw07kavjp30qc2czn2gamrak8xvrl9"; depends=[jsonlite pingr plyr readr stringi stringr tibble]; }; + hydroscoper = derive2 { name="hydroscoper"; version="1.1.1"; sha256="0fykbn3ri9ypyxcrsbwi5pmyzbfp5dvrzg4klhjp0f88yfz80nbm"; depends=[jsonlite pingr plyr readr stringi stringr tibble]; }; hydrostats = derive2 { name="hydrostats"; version="0.2.5"; sha256="1n0wy8i1cfsgmqh898qi0qnqn4qx1srjvd05vmsf9qmhpnnyqw5m"; depends=[]; }; - hyfo = derive2 { name="hyfo"; version="1.3.9"; sha256="03f3irmhndwfnv4i121gwxb2yv1868pggzyr80pgp4969qzddacm"; depends=[data_table ggplot2 lmom maps maptools MASS moments ncdf4 plyr reshape2 rgdal rgeos zoo]; }; + hyfo = derive2 { name="hyfo"; version="1.4.0"; sha256="03xd4nm8zmc8gw8rml8svfim64xcslvpmdcldlri9cf89s8v35br"; depends=[data_table ggplot2 lmom maps maptools MASS moments ncdf4 plyr reshape2 rgdal rgeos zoo]; }; hyper_fit = derive2 { name="hyper.fit"; version="1.0.3"; sha256="17f5i2i960796hl92y7ci9ffspway435r02kw1zk91lvfn927hng"; depends=[LaplacesDemon magicaxis MASS rgl]; }; - hyper2 = derive2 { name="hyper2"; version="1.0-1"; sha256="107cp6na0srqax42fmvcsrviy631hg6phqmkc0cxz1zdxxxw6442"; depends=[partitions Rcpp]; }; + hyper2 = derive2 { name="hyper2"; version="1.0-4"; sha256="00999k891s5l2wcnn6ych1v60ckqd2qxyckrfxh4kxnq9891hqcx"; depends=[magrittr partitions Rcpp]; }; hyperSMURF = derive2 { name="hyperSMURF"; version="2.0"; sha256="1aczsph6ax5xfd5rfvsd9bmgaq3j2f5f82fx8whrgbin0hxz19d8"; depends=[randomForest unbalanced]; }; hyperSpec = derive2 { name="hyperSpec"; version="0.99-20180627"; sha256="12bgp3nm9mwi5w3v8a9fnm4a2cxid3la0r3sxs10azikn5yw0ib5"; depends=[ggplot2 lattice latticeExtra lazyeval testthat XML]; }; hypercube = derive2 { name="hypercube"; version="0.1.0"; sha256="0iv3cfs636mwijm2rjk427izf0gk5lh2fknd7bmb8pd188ckwqmf"; depends=[stringr]; }; - hypergate = derive2 { name="hypergate"; version="0.7"; sha256="02i8aywpdp0daxqrqnxfp2xk60jby268c064lcbggjb9nbm04q0m"; depends=[lattice]; }; + hypergate = derive2 { name="hypergate"; version="0.8"; sha256="0kfw5k8p3scyxc41ylc14bpny14ynbn9l0fjg6bgmgxqsss54d7h"; depends=[]; }; hypergea = derive2 { name="hypergea"; version="1.3.6"; sha256="1k1525bkkj83j2nn9ixidb8vjvdmc4l9jvfarzgg532gg7wn3841"; depends=[]; }; hypergeo = derive2 { name="hypergeo"; version="1.2-13"; sha256="13jdiy216znwhr91iqnh03mvkmyscw439syb3h4i67dd78sphnvd"; depends=[contfrac deSolve elliptic]; }; hypersampleplan = derive2 { name="hypersampleplan"; version="0.1.1"; sha256="1sk3s1jm46ac4i7p433s3kyngj86kq2821zzhp30a3y8vi1j2psq"; depends=[]; }; - hypervolume = derive2 { name="hypervolume"; version="2.0.10"; sha256="16q2h42c2q4b6hq5h6lkxgwizdln1nbq1l7n5f226zjlfrvgk8fx"; depends=[data_table e1071 fastcluster geometry hitandrun ks maps MASS mvtnorm pdist progress raster Rcpp RcppArmadillo rgeos rgl sp]; }; + hypervolume = derive2 { name="hypervolume"; version="2.0.11"; sha256="1lfxsqvkzych9zvknxf4fnsfav9kv8cjss0pr4ny1wbmbvdxbbqc"; depends=[data_table e1071 fastcluster geometry hitandrun ks maps MASS mvtnorm pdist progress raster Rcpp RcppArmadillo rgeos rgl sp]; }; hyphenatr = derive2 { name="hyphenatr"; version="0.3.0"; sha256="0mv77njy0ha7bj3kw620fk9r8cdzqd0v3ipikihqxq47fr57ml0v"; depends=[Rcpp stringi]; }; hypothesestest = derive2 { name="hypothesestest"; version="1.0"; sha256="0g8sm386m1zm9i3900r62x83wb600cy8hqk7dlvbx6wcgrxg82sm"; depends=[]; }; hypothesisr = derive2 { name="hypothesisr"; version="0.1.1"; sha256="0z06risagphhvqiw4lrxy52q6q2yr10w2yxsm8iz1wh9ik097pcv"; depends=[dplyr httr jsonlite]; }; @@ -7439,8 +7765,8 @@ in with self; { hzar = derive2 { name="hzar"; version="0.2-5"; sha256="000l4ki3hvznnhkxc5j422h5ifnsfqalv666j48yby1hsf1lc3kg"; depends=[coda foreach MCMCpack]; }; iBATCGH = derive2 { name="iBATCGH"; version="1.3"; sha256="0pnkkabzi57czcwd9i15nwv8ggwvyxmvn1wam7yrrrbvmi17lmrm"; depends=[msm Rcpp RcppArmadillo]; }; iBST = derive2 { name="iBST"; version="1.0"; sha256="02p7lcr1wrf21v4568jc8hmjcijy3fnbv77s8nlhv2s4p0pgzh5x"; depends=[Rcpp rpart survival]; }; - iC10 = derive2 { name="iC10"; version="1.1.3"; sha256="19dlrwj47zmdgmvzjfs5qa9fqq8g9ywhgy5mqbp99n7d9hg4ybxh"; depends=[iC10TrainingData pamr]; }; - iC10TrainingData = derive2 { name="iC10TrainingData"; version="1.0.1"; sha256="1x1kgxiib9l7whm2kmbv1s912hgpl7rdpqpn67nlkiswnr27hqn4"; depends=[]; }; + iC10 = derive2 { name="iC10"; version="1.4.2"; sha256="0p7xqshybfqm3basvph7x718yppk4kbg8agpvpq0kmkq5db5n1w6"; depends=[iC10TrainingData pamr]; }; + iC10TrainingData = derive2 { name="iC10TrainingData"; version="1.3.1"; sha256="175ymib3h359296hk36psryksisipx63ybvacz8hys21irzx58j1"; depends=[]; }; iClick = derive2 { name="iClick"; version="1.4"; sha256="1j1mk4w1m90f90ijxdiw67sycxms4mqljcmsic81m2pq228l8zd5"; depends=[boot car coefplot fBasics forecast lattice lmtest lubridate openair papeR rugarch sandwich timeDate timeSeries xts zoo]; }; iCluster = derive2 { name="iCluster"; version="2.1.0"; sha256="09j36xv87d382m5ijkhmp2mxaajc4k97cf9k1hb11ksk7fxdqz6r"; depends=[caTools gdata gplots gtools lattice]; }; iDINGO = derive2 { name="iDINGO"; version="1.0.2"; sha256="041yvp3nzk3ipjlx17xcn9yiwr1hlns0pd3vzqrck5v9glnp4sbr"; depends=[GGMridge glasso igraph mvtnorm scales visNetwork]; }; @@ -7451,8 +7777,8 @@ in with self; { iGSEA = derive2 { name="iGSEA"; version="1.2"; sha256="1xlz8mbxqnrwyqj7jwma7vmvjlaccajbfxf3hi4wp5qs2pch8806"; depends=[]; }; iGasso = derive2 { name="iGasso"; version="1.4"; sha256="17xxqncl5xcphdqclghcazygcgibf8ijdf4kkl3ga11xf70sahj2"; depends=[CompQuadForm lattice]; }; iMRMC = derive2 { name="iMRMC"; version="1.1.0"; sha256="04wpqdds5vfqvl8n5g64vnyh4a40dxjh8l1bgw1vdz1372n0421g"; depends=[]; }; - iMediate = derive2 { name="iMediate"; version="0.4"; sha256="0pwvzd0k9m2jd7sizl436vs63rg9yinisrb0flz34yj5avn6rmb0"; depends=[mediation mvtnorm plotly]; }; - iNEXT = derive2 { name="iNEXT"; version="2.0.12"; sha256="1041r5k0k3kzik5vwyd62s4yc85lnnxbg5gbbl0kl629kikymb6y"; depends=[ggplot2 reshape2]; }; + iMediate = derive2 { name="iMediate"; version="0.5"; sha256="0gr0nibfdmiyxz8n7pfcl1d2gxhl5g2pi9yhnmsvqzry4j3x27yw"; depends=[mvtnorm plotly]; }; + iNEXT = derive2 { name="iNEXT"; version="2.0.17"; sha256="1gg9zzcfjn70scz9kmn37rvz3lnbkbd4a59xmfy56x9xgs3wrxwp"; depends=[ggplot2 reshape2]; }; iNOTE = derive2 { name="iNOTE"; version="1.0"; sha256="1969xmgfv9405r09zpd2icvjd9vvzw4dx5qaqxk1a0jvbvhp3h88"; depends=[CompQuadForm mixtools plyr]; }; iNextPD = derive2 { name="iNextPD"; version="0.3.2"; sha256="06wka2qr1jm3hvi8j0b19fr21v72gmqknz8dg0l5wl91m0prqns3"; depends=[ade4 ggplot2 iNEXT Rcpp]; }; iRF = derive2 { name="iRF"; version="2.0.0"; sha256="1ll4lxg743p2zipxcq13yjsc7j7dk766dcyixwxilllbisg0dh8y"; depends=[AUC data_table doParallel dplyr foreach Matrix RColorBrewer Rcpp]; }; @@ -7465,7 +7791,7 @@ in with self; { iWISA = derive2 { name="iWISA"; version="1.0-2"; sha256="0jqi1kh7jlc04nb9d1w711q4i8j1vgwbxjls09z7853kv22wxfyz"; depends=[fda ggplot2 waveslim]; }; iWeigReg = derive2 { name="iWeigReg"; version="1.0"; sha256="09ajbqllr4ajmpk8qs6qw019fx8a7vsabm37867zycssn77z9nc8"; depends=[MASS trust]; }; iadf = derive2 { name="iadf"; version="0.1.0"; sha256="02zx9n4ncg10bbydrr05631vzc4w2b1jg3x6xiaffg7x5rh4mnyf"; depends=[dplR dplyr manipulate rlang tibble tidyr]; }; - ibd = derive2 { name="ibd"; version="1.3"; sha256="0a94vn5awn425qw99y8y38xivgzq16s3yvpkgld54p7jwhvmgxln"; depends=[car emmeans lpSolve MASS multcompView]; }; + ibd = derive2 { name="ibd"; version="1.4"; sha256="1755zbsy7ym5xpnma1r2hdii11p42765k8xxf3dfv6mbhxiyzpbq"; depends=[car emmeans lpSolve MASS multcompView]; }; ibdreg = derive2 { name="ibdreg"; version="0.2.5"; sha256="1kaa5q1byi30wzr0mw4w2cv1ssxprzcwf91wrpqwkgcsdy7dkh2g"; depends=[]; }; ibeemd = derive2 { name="ibeemd"; version="1.0.1"; sha256="115z13q02gzixziknix2l53mi12zzg30ra9h35pv6qzrr11ra1ic"; depends=[deldir fields rgeos sp spdep]; }; ibelief = derive2 { name="ibelief"; version="1.2"; sha256="1zh6bpg0gaybslr1p05qd5p2y5kxbgyhgha4j4v5d69d78jwgah9"; depends=[]; }; @@ -7481,32 +7807,32 @@ in with self; { icapca = derive2 { name="icapca"; version="1.1"; sha256="131gdrk8vsbac0krmsryvsp21bn9hzxqxq847zn16cxjf6y5i3xb"; depends=[]; }; icarus = derive2 { name="icarus"; version="0.3.0"; sha256="1656bz0av59dpgndibn0bc5zr9zka9pmw7qmhjz2b956bh7sh4ag"; depends=[]; }; iccbeta = derive2 { name="iccbeta"; version="1.1.0"; sha256="1xw0mz3ipkfz1jsjzwjnrm0af1gs31js7nvgy79cxqz31955zjww"; depends=[Rcpp RcppArmadillo]; }; - icd = derive2 { name="icd"; version="3.2.0"; sha256="0wd5d9zlhy9wh3phy4mz8zg0jv08hjizvlscaj208a64lwkzvq7g"; depends=[checkmate icd_data magrittr Rcpp RcppEigen testthat]; }; + icd = derive2 { name="icd"; version="3.2.1"; sha256="0knhiy18jckdyxvhp80hif1wnfg6r8fvl7h6ixb0q3lgqdc79749"; depends=[checkmate icd_data magrittr Rcpp RcppEigen testthat]; }; icd_data = derive2 { name="icd.data"; version="1.0"; sha256="0cynr9327wfg88661w4hali48mb6ghyvlqgybsa38k9bbf57v8aa"; depends=[]; }; icdGLM = derive2 { name="icdGLM"; version="1.0.0"; sha256="1mh9kwn21n19v4lrmj33ghpna7dl66fx19gi6lcjanmrpzrkwdnz"; depends=[Matrix]; }; - icenReg = derive2 { name="icenReg"; version="2.0.7"; sha256="1fc6l3mqnm4rcg49bk2plfa011g7nay71gzd4nxnjisifmw6qi2s"; depends=[coda foreach MLEcens Rcpp RcppEigen survival]; }; + icenReg = derive2 { name="icenReg"; version="2.0.9"; sha256="0jfizdahdnvq6a476j25acvahrh68anihimk26nl98sad1gf9zzk"; depends=[coda foreach MLEcens Rcpp RcppEigen survival]; }; icensBKL = derive2 { name="icensBKL"; version="1.1"; sha256="12zx5x81jy48mp0l6a5ga0ikkjxvndv5cv2xf6d2lczfk7fz9lbp"; depends=[gtools Icens MASS mvtnorm smoothSurv survival TeachingDemos]; }; icensmis = derive2 { name="icensmis"; version="1.3.1"; sha256="1c0j43wffb5h99chlj8j45lpan7dpn2i0r4rr6b2kq16p1zabfjw"; depends=[Rcpp]; }; icesAdvice = derive2 { name="icesAdvice"; version="1.4-2"; sha256="10f1ss949gi7s5fhfbygqaf05pshalw6sa266v4gnxqwqynf4qbj"; depends=[]; }; icesDatras = derive2 { name="icesDatras"; version="1.2-0"; sha256="0arkn9ma03qb21sv5chmz5fj65da5ivqhvrg8bqibbky8zkix1vh"; depends=[]; }; icesSAG = derive2 { name="icesSAG"; version="1.3-4"; sha256="1s330691an1m5h1i342ls6igqcqrlrwyhapa82x5h2krdia0nmnp"; depends=[httr icesVocab openssl png xml2]; }; - icesTAF = derive2 { name="icesTAF"; version="1.6-1"; sha256="0fsc79id8mcdp53xsrhzy43mvhginr3sixqhsxwvcz497kwdyj4a"; depends=[]; }; + icesTAF = derive2 { name="icesTAF"; version="1.6-2"; sha256="1r8dsc3dm6ziscgl7xr84b07myflwkdnpqjf0wjd3d0h5x8xdkdh"; depends=[]; }; icesVocab = derive2 { name="icesVocab"; version="1.1-2"; sha256="15ha2visv44pphkahg766afafh6467lwznvppwkvqjrbfiijkc6l"; depends=[XML]; }; icmm = derive2 { name="icmm"; version="1.1"; sha256="1w9f1rniz67rrvq0akc64s5433ddmr2cgbcljil4c58yyz8hinx8"; depends=[EbayesThresh]; }; icosa = derive2 { name="icosa"; version="0.9.81"; sha256="05gpiksncdi536f4py7szfi6myny1gqj8i0hsgpma7cfcm3npn0l"; depends=[igraph raster Rcpp rgdal rgl sp]; }; icpsrdata = derive2 { name="icpsrdata"; version="0.3.0"; sha256="17sprbbi8fmvcp8d7hwrxl5amg0j036wq483cw62zbmni3p3fl82"; depends=[httr purrr rvest]; }; - icr = derive2 { name="icr"; version="0.5.4"; sha256="0vm2k2pjsnikb80crzhxs1wpxpjjigyny5ldini6sxg3lwhc14l3"; depends=[ggplot2 Rcpp tidyr]; }; + icr = derive2 { name="icr"; version="0.5.8"; sha256="1grakn7c7slm2msdm8r059ky0s77apl80xhy65isxwj7ica64i9k"; depends=[ggplot2 Rcpp]; }; icsw = derive2 { name="icsw"; version="1.0.0"; sha256="0g7bcqs0rpbs1p202i9wjbl8hhy3r196zambm044xyf7kvsbzzf6"; depends=[]; }; idar = derive2 { name="idar"; version="1.0"; sha256="1yfv3na4rcldkpzybf7la227z4ynsl1scrziirl5gp072k7zrs01"; depends=[ape FD picante spatstat]; }; idbg = derive2 { name="idbg"; version="1.0"; sha256="1rxmj04hswxybrg7dfib3mjy8v8mdiv13zwbscp2q55z55hhf1m5"; depends=[]; }; idbr = derive2 { name="idbr"; version="0.3"; sha256="02syk7fmif0xnddl8189vnl329r8mwl3iwv2rsf6cw7mwg30fhyw"; depends=[countrycode dplyr httr jsonlite]; }; idealstan = derive2 { name="idealstan"; version="0.2.7"; sha256="1818vwlv5cr6qyg7p6kgyb996n89d2xr4cy6ys9pdhrp7lip9prr"; depends=[bayesplot BH dplyr ggplot2 lazyeval Rcpp RcppEigen rlang rstan rstantools shinystan StanHeaders stringr tidyr]; }; - idefix = derive2 { name="idefix"; version="0.2.4"; sha256="0j64pmccg01lscvjg9z97ypv3svl4jbvs4819jn4kc9ni6gq4fai"; depends=[dplyr gtools MASS maxLik Rdpack scales shiny]; }; + idefix = derive2 { name="idefix"; version="0.3.1"; sha256="18anykh7y8437ivjyc43x2fwkqni082w2aahmq3ml6i9f21w48ci"; depends=[dplyr gtools MASS maxLik mlogit Rcpp RcppArmadillo Rdpack scales shiny tmvtnorm]; }; idem = derive2 { name="idem"; version="3.5"; sha256="1fr456drfnla917byw0c8ppqrhq4i7gsd4idfasx6xx5fqhv7ypc"; depends=[BH Rcpp RcppEigen rstan sqldf StanHeaders survival]; }; idendr0 = derive2 { name="idendr0"; version="1.5.3"; sha256="11c12d166bp2i498d8y6ipg5jhz1xsdsrmnhjqnrqqzp9avvrsjp"; depends=[tkrplot]; }; identity = derive2 { name="identity"; version="0.2-1"; sha256="1j5wb5cj5j49in2g6r1shdm4ri4cfzj22hpqazvcmq4dm291sdi9"; depends=[]; }; ider = derive2 { name="ider"; version="0.1.0"; sha256="021s4fybki7a6mdsr6gkjrzfhaqdcg0m2a6r24y91jklxlxqxmws"; depends=[FNN]; }; - idm = derive2 { name="idm"; version="1.8.1"; sha256="14cy1gv12wjpsv5jih7pgq5d36gfpdc56ih4mc6hx638qkkyk87z"; depends=[animation ca corpcor dummies ggplot2 ggrepel]; }; + idm = derive2 { name="idm"; version="1.8.2"; sha256="04f0i0kwdxywmj2i184knx5a5v9svx0lbam6wpz49hghg7qpy0w5"; depends=[animation ca corpcor dummies ggplot2 ggrepel]; }; idmTPreg = derive2 { name="idmTPreg"; version="1.1"; sha256="1329sjb4dnw3yiyg16whbj4l2v0kg8phg1x4ysvyp2kqkmw14yq6"; depends=[doParallel foreach survival]; }; idr = derive2 { name="idr"; version="1.2"; sha256="05nvgw1xdg670bsjjrxkgd1mrdkciccpw4krn0zcgdf2r21dzgwb"; depends=[]; }; ids = derive2 { name="ids"; version="1.0.1"; sha256="1s6ga94gds5ydr9f8qbjfgfpg2dvbnkcrlybqlb33hk3c0c2l8dn"; depends=[openssl uuid]; }; @@ -7522,42 +7848,44 @@ in with self; { ifs = derive2 { name="ifs"; version="0.1.5"; sha256="03g9cgs0zp89b1d7rpcn5clkvmg0spnariwrifd8hha476ldvfcy"; depends=[]; }; ifultools = derive2 { name="ifultools"; version="2.0-4"; sha256="0pv2msaa1rmj8csxdclzi2jwg9pfdvh87blj9j3xa3myisglq092"; depends=[MASS splus2R]; }; ig_vancouver_2014_topcolour = derive2 { name="ig.vancouver.2014.topcolour"; version="0.1.2.0"; sha256="0yclvm6xppf4w1qf25nf82hg1pliah68z7h3f683svv0j62q748h"; depends=[]; }; - igraph = derive2 { name="igraph"; version="1.2.1"; sha256="1hcr6b1lz030lgay1bz8y8sxaf2j93ds8n8gsqr6qhssz141hd2m"; depends=[magrittr Matrix pkgconfig]; }; + igraph = derive2 { name="igraph"; version="1.2.2"; sha256="1bggm7b8v3bh7q2589w26qvd7sgs69m4qiij7d0rbm0ykkgxm8lx"; depends=[magrittr Matrix pkgconfig]; }; igraphdata = derive2 { name="igraphdata"; version="1.0.1"; sha256="19w5npa4b8c054v94xlr7nmhhg2fhq4m8jbds86skp8zvipl4rkl"; depends=[]; }; igraphinshiny = derive2 { name="igraphinshiny"; version="0.1"; sha256="1ww5s4jfihzcx4k35lbhzsf54z720xh7b2p5alzk843m6rx77986"; depends=[igraph shiny]; }; igraphtosonia = derive2 { name="igraphtosonia"; version="1.0"; sha256="0vy9jnpjp68l8s0hi1l57j9p41c543h3iqv16pwl550f38zqp8j6"; depends=[igraph]; }; iheatmapr = derive2 { name="iheatmapr"; version="0.4.3"; sha256="0124d7h8n83zb5kvvavccprlqknpqrd634zv7sz9s915xzhp7jgz"; depends=[fastcluster ggdendro htmlwidgets jsonlite knitr magrittr plyr RColorBrewer S4Vectors scales]; }; ihs = derive2 { name="ihs"; version="1.0"; sha256="1c5c9l6kdalympb19nlgz1r9zq17575ivp3zrayb9p6w3fn2i06h"; depends=[maxLik]; }; iilasso = derive2 { name="iilasso"; version="0.0.2"; sha256="043m1n5840459zsknkb54801apb0a2cqfprncmj2wp235rbqj832"; depends=[BH Matrix Rcpp]; }; - ijtiff = derive2 { name="ijtiff"; version="1.1.0"; sha256="0hb201qcwynbdi2fzspvv9sdhyx0cypbsvhawhcwj5zqdp6f507f"; depends=[checkmate fields filesstrings magrittr purrr Rcpp readr rlang stringr]; }; + ijtiff = derive2 { name="ijtiff"; version="1.4.2"; sha256="1wqh8cwcpzfnkcm2ljabbkfaddmd9dxvaqsc3vp1ivnmq426fh99"; depends=[BBmisc checkmate dplyr fields filesstrings glue magrittr purrr Rcpp readr rlang stringr]; }; iki_dataclim = derive2 { name="iki.dataclim"; version="1.0"; sha256="1yhvgr8d3j2r8y9c02rzcg80bz4cx58kzybm4rch78m0207wqs7p"; depends=[climdex_pcic lubridate PCICt zoo]; }; ilc = derive2 { name="ilc"; version="1.0"; sha256="0hs0nxv7cd300mfxscgvcjag9f2igispcskfknb7sn7p8qvwr5ki"; depends=[date demography forecast rainbow survival]; }; imageData = derive2 { name="imageData"; version="0.1-50"; sha256="0i56sksyxa50bhp3pimgag2bg37y1gfadky6i0xgg484wf1xw148"; depends=[dae GGally ggplot2 Hmisc RColorBrewer reshape XLConnect]; }; imager = derive2 { name="imager"; version="0.41.1"; sha256="0ja8pi8l44llq75af4y8blb6vby43ikmy87sx83i1i327zfjzd5g"; depends=[Cairo downloader igraph jpeg magrittr plyr png purrr Rcpp readbitmap stringr]; }; - imagerExtra = derive2 { name="imagerExtra"; version="1.1.1"; sha256="02ws4l52a3jrgqmn76p6p54mnb0ypvkd39yj8pqn8qg8l44fp3nw"; depends=[dtt imager magrittr Rcpp]; }; + imagerExtra = derive2 { name="imagerExtra"; version="1.2.0"; sha256="1r94zcnfvd92qqls76ma3vgc8bnhah5jlminnbp9knr0jar8r0xp"; depends=[fftwtools imager magrittr Rcpp tesseract]; }; imaginator = derive2 { name="imaginator"; version="0.1.1"; sha256="1xp5wsv570f1qy2fn99d8ijydmlapb6h6kinj07pilvv215dg93w"; depends=[assertthat dplyr lubridate magrittr stringi]; }; imagine = derive2 { name="imagine"; version="1.4.0"; sha256="1v0rds64i0f3xgg7ca14ncw4nrcc80gvjf1fbp498idq38z79qzc"; depends=[Rcpp]; }; imbalance = derive2 { name="imbalance"; version="1.0.0"; sha256="1pfhwf4844m0a8qsm852am63x18vlkbs6m1s9izrpd219616skpr"; depends=[bnlearn C50 FNN ggplot2 KernelKnn mvtnorm Rcpp RcppArmadillo smotefamily]; }; imdbapi = derive2 { name="imdbapi"; version="0.1.0"; sha256="11v7c0s7qqf02b186md5lhgkgmywkn8lmmanlz3gfcxca26g047y"; depends=[dplyr httr stringr]; }; imfr = derive2 { name="imfr"; version="0.1.5"; sha256="1f4zynra79h42dmd9qhg67wwvs7c640f5is98bq30fdphiybihgz"; depends=[dplyr httr jsonlite]; }; imguR = derive2 { name="imguR"; version="1.0.3"; sha256="14f7ghgc8rbrpqb21rinfbrj1wh80i6ii0awwi814152v5qzj4b3"; depends=[httr jpeg png]; }; - iml = derive2 { name="iml"; version="0.5.1"; sha256="043n14samxl85by7vihrc7nv45kaj287m0ab04fssvfn8rnprqlh"; depends=[checkmate data_table ggplot2 glmnet Metrics partykit R6]; }; + iml = derive2 { name="iml"; version="0.7.1"; sha256="1wiylfd83p4wzccp0r3ydxy14zvw81q368h61gimrcm7110fdpx9"; depends=[checkmate data_table foreach ggplot2 glmnet Metrics partykit R6 yaImpute]; }; immer = derive2 { name="immer"; version="1.0-138"; sha256="0jpjrvr3mpgqfyl56i95grb3jmrzzs00ciafsw9rd7fpbxnskkjf"; depends=[CDM coda MASS psychotools Rcpp RcppArmadillo sirt TAM]; }; - imp4p = derive2 { name="imp4p"; version="0.6"; sha256="1aaj62ia87khkdkw6lx59dcx3lq1clfdzw7gbi0ffy99lp608q6s"; depends=[imputeLCMD Iso Rcpp truncnorm]; }; + imp4p = derive2 { name="imp4p"; version="0.7"; sha256="1hpxx1jpwd4v19xnpjjbwcvfzvb63jfd0jq3vcq000w7am9pwwba"; depends=[Iso norm Rcpp truncnorm]; }; + impimp = derive2 { name="impimp"; version="0.2.0"; sha256="0qaf7spcgjvg8s8nm4b535gx63vp6fy7r084xfxd94ygr8vb3lww"; depends=[]; }; implyr = derive2 { name="implyr"; version="0.2.4"; sha256="1xc5c8wpq1bdvfm4rkqmvykgkil9fm9n1q9ndjv701jbdr4rnisd"; depends=[assertthat DBI dbplyr dplyr rlang tidyselect]; }; r_import = derive2 { name="r_import"; version="1.1.0"; sha256="0blf9539rbfwcmw8zsb4k58slb4pdnc075v34vmyjw752fznhcji"; depends=[]; }; importar = derive2 { name="importar"; version="0.1.1"; sha256="0xv445fmjhsbdlsq03k2rlycnggn3rcyq5a49zrg4jvjamzr0rgr"; depends=[]; }; imprProbEst = derive2 { name="imprProbEst"; version="1.0.1"; sha256="09y8yd9sw0b79ca45ryi7p82vy5s8cx0gg603rlc39lgwcdv45i3"; depends=[inline lpSolve]; }; + imptree = derive2 { name="imptree"; version="0.5.1"; sha256="0f087000092ydnpj3ch4mbip8wp32scn8xw4vlkq5lf6130gfs1b"; depends=[Rcpp]; }; imputeLCMD = derive2 { name="imputeLCMD"; version="2.0"; sha256="10v3iv1iw6mnss6ry836crq9zdgid2y1h3pvigzjsrmnp5n89mfz"; depends=[impute norm pcaMethods tmvtnorm]; }; imputeMDR = derive2 { name="imputeMDR"; version="1.1.2"; sha256="0ds5a4wav9vb9z5nji8hv5l76310rd970xf702fd0ckx1sh6rgd7"; depends=[]; }; imputeMissings = derive2 { name="imputeMissings"; version="0.0.3"; sha256="1dfhi235j1qz2mv89j92b903j5mdwlzisiyvvi9mmiacdj5ln89z"; depends=[randomForest]; }; imputeMulti = derive2 { name="imputeMulti"; version="0.6.4"; sha256="0ngjbj8pl5mwprrgy234a5p9dhf615z7ymfv8184hby1z6ib3mgl"; depends=[DBI gtools Rcpp RSQLite]; }; imputePSF = derive2 { name="imputePSF"; version="0.1.0"; sha256="0xfd2mybg0cbi3n35j28s4xq4iwr5rq4mqwgdqml7l2rlzidcwc8"; depends=[PSF]; }; - imputeR = derive2 { name="imputeR"; version="2.0"; sha256="0xyvy785jb1mv06jq25cnsbgiywi3857sdiizcjck7bx970lk02n"; depends=[caret Cubist gbm glmnet mboost pls rda reshape2 ridge rpart]; }; + imputeR = derive2 { name="imputeR"; version="2.1"; sha256="1xsawars52jhxfpl4hx8ghhndrvqk9vrrgajrrz2xrzi88kf6in2"; depends=[reshape2]; }; imputeTS = derive2 { name="imputeTS"; version="2.7"; sha256="12y6qzy00kb7jap4h92f3zpgdazlw3y4zydhv7gzfsmx1ka7nsfm"; depends=[forecast magrittr Rcpp stinepack]; }; imputeTestbench = derive2 { name="imputeTestbench"; version="3.0.1"; sha256="0yxvwk1bcsid116a4zqsagf2dl3vhzva559bfjjcqdgyniapcmcj"; depends=[dplyr forecast ggplot2 imputeTS reshape2 tidyr zoo]; }; imputeYn = derive2 { name="imputeYn"; version="1.3"; sha256="1b21w1aa5f7yiq8k0wa86wvbg4ij7f6ldwn6asfqwb0b90rvsgvs"; depends=[boot emplik mvtnorm quadprog survival]; }; - imsig = derive2 { name="imsig"; version="0.1.0"; sha256="0qjr2xbha6ikcfmkl0crhf9akrbygwsk87xhb45q8633fk3ssw51"; depends=[ggplot2 gridExtra HiClimR igraph RColorBrewer survival]; }; + imsig = derive2 { name="imsig"; version="1.0.0"; sha256="01ww48x9a189dvr81bangfhchr70l0sg26jdpcxf41nh2fmslfxx"; depends=[ggplot2 gridExtra HiClimR igraph RColorBrewer survival]; }; in2extRemes = derive2 { name="in2extRemes"; version="1.0-3"; sha256="1lgsqm29zmjyf8kynyra2p3q7bs4fyd7ac4v6s3pbahzhhzdk94y"; depends=[extRemes]; }; inTrees = derive2 { name="inTrees"; version="1.2"; sha256="1mwn2ijkyw0y9xcgrr56wxd2326ikarlsi79l59dplvlx2iwbi6c"; depends=[arules data_table gbm RRF xgboost xtable]; }; inaparc = derive2 { name="inaparc"; version="0.2.0"; sha256="0rgbnvvqzbx4j40qz32l1bxmg3wwzbl6719wb9m3xpakblvhhxs2"; depends=[kpeaks lhs]; }; @@ -7565,16 +7893,16 @@ in with self; { inbreedR = derive2 { name="inbreedR"; version="0.3.2"; sha256="09fr13ckyn2skiigkn4qdx5g080gcmyyrvzhcp0wrml9wpmy0h4z"; depends=[data_table]; }; incR = derive2 { name="incR"; version="1.1.0"; sha256="0q41bs7pf6hqyfwvcwc2sxq44jq95qq3qsddz53f8gphwjsyf1v7"; depends=[dplyr ggplot2 lubridate maptools rgeos]; }; inca = derive2 { name="inca"; version="0.0.3"; sha256="1g9js84xa5b6jl8gp4k0c55kjazfaw5g9biwk4v6vz3vwkwayyzh"; depends=[Matrix Rcpp RcppArmadillo]; }; - incadata = derive2 { name="incadata"; version="0.6.1"; sha256="05i0zifdzc1w6p6annhzp9rdd4v82gx2sxi4lqpdnraaczdrhgbb"; depends=[backports decoder dplyr rccmisc rvest sweidnumbr xml2]; }; + incadata = derive2 { name="incadata"; version="0.6.4"; sha256="1aj07zhf82wwg80jp461xapw8x9caa7daa59n4mxl8nqryrs77q0"; depends=[backports decoder dplyr rccmisc rvest sweidnumbr xml2]; }; incgraph = derive2 { name="incgraph"; version="1.0.1"; sha256="0zjvxk2krdlm5bcr0m80nxy46f69a1xadfjw5sjw249b28wdclml"; depends=[BH dplyr orca purrr Rcpp testthat tibble]; }; - incidence = derive2 { name="incidence"; version="1.3.1"; sha256="0qylfim4gc9i9dyhyjpfar95rznbf1lh06hvvjmxxyrc1a7lzaxw"; depends=[ggplot2 ISOweek]; }; - inctools = derive2 { name="inctools"; version="1.0.11"; sha256="08a1aqsx1f1mkykpgbqbgvai60zxj9zwpmxynyajbm4lwr3rc6rp"; depends=[cubature doParallel dplyr foreach ggplot2 glm2 magrittr plyr pracma tmvtnorm]; }; + incidence = derive2 { name="incidence"; version="1.4.1"; sha256="13c518hlhpmdl4vw4xbb593arw2pvzsj18dpvdzg7n2f8lslbyr8"; depends=[ggplot2 ISOweek]; }; + inctools = derive2 { name="inctools"; version="1.0.14"; sha256="0ial852b96x310wzvla9lahxz3mwbqqv0l0lafs0bnmyaiiwycxv"; depends=[cubature doParallel dplyr foreach ggplot2 glm2 magrittr plyr pracma rlang tibble tmvtnorm]; }; indelmiss = derive2 { name="indelmiss"; version="1.0.8"; sha256="0674hvgdq0fxab3h55iililphrr6lqp25359crvkqqgb8higbs0h"; depends=[ape numDeriv phangorn Rcpp]; }; indicspecies = derive2 { name="indicspecies"; version="1.7.6"; sha256="0a7s37k3bg4cnzkvn833nrwi6hnfa5f6jxa8ra954v4sp55g6i5d"; depends=[permute]; }; indirect = derive2 { name="indirect"; version="0.2.0"; sha256="1k7xwsx655nzl43s1mkaysyn5gydq973gynmqip67lssnm7cnch4"; depends=[gplots MASS]; }; inegiR = derive2 { name="inegiR"; version="2.0.0"; sha256="00bhb3zvqhir2rqza3axk98lxhq98s41apwpsm242pqb7wsnmg95"; depends=[jsonlite plyr XML zoo]; }; ineq = derive2 { name="ineq"; version="0.2-13"; sha256="09fsxyrh0j7mwmb5hkhmrzgcy7kf85jxkh7zlwpgqgcsyl1n91z0"; depends=[]; }; - infer = derive2 { name="infer"; version="0.2.0"; sha256="1wkfbrwq616nj1k0rmwvbnqy8ngrmxc49d6j69s5vpws2g3ga00j"; depends=[assertive dplyr ggplot2 magrittr rlang tibble]; }; + infer = derive2 { name="infer"; version="0.3.1"; sha256="0yzminwsndx1aizb91palzvlmg9pp7hnx0zfpifbj1vv00jz6d1c"; depends=[dplyr ggplot2 glue magrittr rlang tibble]; }; inference = derive2 { name="inference"; version="0.1.0"; sha256="0j92isfkbhk13yx2hd3a5dd7ikcbgjc04zisd1n5kmg6ajw2aj6r"; depends=[sandwich]; }; inferference = derive2 { name="inferference"; version="1.0.0"; sha256="1x6i8ycba9z57m1n143p1j9pmlfrhjhi4iw0fsny8xmcvqrlr85p"; depends=[Formula lme4 numDeriv]; }; inferr = derive2 { name="inferr"; version="0.3.0"; sha256="1z5bfq0gv1h6iw8nwc19ar6f2sgsvgs3ghq52s09wclqk2yy4azz"; depends=[dplyr magrittr purrr Rcpp rlang shiny tibble tidyr]; }; @@ -7592,13 +7920,13 @@ in with self; { infutil = derive2 { name="infutil"; version="1.0"; sha256="02d0hfbkdqjj0lm1fzwwxy60831kbcjn2m4rfblpib0krkbpz72n"; depends=[ltm]; }; ini = derive2 { name="ini"; version="0.3.1"; sha256="04yqij344dwm0xqgara8xia42mlmij3i8711qbb5534w05a1l6bv"; depends=[]; }; injectoR = derive2 { name="injectoR"; version="0.2.4"; sha256="0sa32cspp6y3m04yfmd02kxx55mk7l9jxf4r9pk1a6k3sqnj6fl8"; depends=[]; }; - inlabru = derive2 { name="inlabru"; version="2.1.3"; sha256="09sdbzg3cdg43clkwnahkhyns019gjya55m6zhq340mgrnirx2i5"; depends=[ggplot2 rgdal rgeos sp]; }; + inlabru = derive2 { name="inlabru"; version="2.1.9"; sha256="0jbqk8hcsfgzwr35icqwc6ch0n9v7s812hqwmn3q13l2a4lznm91"; depends=[ggplot2 Matrix rgdal rgeos sp]; }; inline = derive2 { name="inline"; version="0.3.15"; sha256="0s4wssvpan189fijahknxq5s22ww9bzmdlmyhnra748r7khky17z"; depends=[]; }; inlinedocs = derive2 { name="inlinedocs"; version="2013.9.3"; sha256="13vk6v9723wlfv1z5fxmvxfqhaj68h0x3s2qq9j6ickr4wakb4ar"; depends=[]; }; - inlmisc = derive2 { name="inlmisc"; version="0.4.0"; sha256="0hhw87zvqd2mplpbmbh1y91pyfgyqamw4wiz74a6qwn705bcymah"; depends=[checkmate dplyr GA htmltools htmlwidgets igraph knitr leaflet raster rgdal rgeos sp xtable]; }; - inpdfr = derive2 { name="inpdfr"; version="0.1.6"; sha256="0fwznjsq4wccqfnb3a5ic1nyx538jxmlcv59xdz06y6raczjp9q9"; depends=[ca cluster entropart metacom R_devices RColorBrewer SnowballC stringi tm wordcloud]; }; + inlmisc = derive2 { name="inlmisc"; version="0.4.3"; sha256="0y13mxibdnn1397wbxx52gvk213mgslqg40ymcrzgvwb4c7rp8sn"; depends=[checkmate dplyr GA htmltools htmlwidgets igraph knitr leaflet raster rgdal rgeos sp xtable]; }; + inpdfr = derive2 { name="inpdfr"; version="0.1.8"; sha256="1xscrqkwl15l5r1sik6mnhzl868s9yxscm74sp740n3107md92hx"; depends=[ca cluster entropart metacom R_devices RColorBrewer SnowballC stringi tm wordcloud]; }; inplace = derive2 { name="inplace"; version="0.1.0"; sha256="1lmvfjxgficlzxbn953wvfa1n9lys9gqprix6zbqqr4d6vkm0srj"; depends=[Rcpp]; }; - insect = derive2 { name="insect"; version="1.1.0"; sha256="11r21ljif0pwswmmdzbyy3i9q2rwxn7izhr44dkiwcyjv7yig54j"; depends=[ape aphid kmer openssl phylogram xml2]; }; + insect = derive2 { name="insect"; version="1.1.1"; sha256="0gvjml5f7c8k6vsp1s5l85avmh7j6asy2ljkhcrwy6hybf8z1dj5"; depends=[ape aphid kmer openssl phylogram xml2]; }; insideRODE = derive2 { name="insideRODE"; version="2.0"; sha256="1ffndk8761cpkririb3g1qsq9nwmh82lcrpql9i5fksdprvdjzcw"; depends=[deSolve lattice nlme]; }; insol = derive2 { name="insol"; version="1.1.1"; sha256="0zbawkp4qb0kqb7y9ibiyy8sa9rfgbzwmcdswx6s87p0h7brrqn6"; depends=[]; }; inspectr = derive2 { name="inspectr"; version="1.0.0"; sha256="04rpr5ajpdx1d49y327dryxwxk27yljj4c96i9qglf02i9kmplkg"; depends=[openxlsx]; }; @@ -7610,12 +7938,13 @@ in with self; { intRvals = derive2 { name="intRvals"; version="1.0.0"; sha256="0391raj5wq6issvzqm8bfnv1ap2hh5nfsqi9r1x5ss37fvcq5fjm"; depends=[lme4 plyr]; }; intamap = derive2 { name="intamap"; version="1.4-9"; sha256="060sghkqsdrxpa340rvjskh2wafdkffa5q8nlbg1msnsmk639lkn"; depends=[automap doParallel evd foreach gstat MASS mvtnorm rgdal sp]; }; intamapInteractive = derive2 { name="intamapInteractive"; version="1.1-12"; sha256="1h8kzinfpp2rwal11xqs9g99rmigs0jlsr5h0qh0zsill73minid"; depends=[automap gstat intamap rgdal sp spatstat spcosa]; }; - intccr = derive2 { name="intccr"; version="1.0.2"; sha256="1vdrdig82xbg4ax67vsr00v28z40qd54kcw6b8cml59sqn13zxl2"; depends=[alabama doParallel foreach numDeriv]; }; + intccr = derive2 { name="intccr"; version="1.0.3"; sha256="0sk43k8zw2ssa6cc8ljxd51q7489kq1bb2r1j5rp18895kq3c8wc"; depends=[alabama doParallel foreach numDeriv]; }; intcensROC = derive2 { name="intcensROC"; version="0.1.1"; sha256="0qkgp6iw2s772zk2533jsar64f5mqgy4874swgarnfgd4jvkwy2k"; depends=[pracma Rcpp RcppEigen]; }; integIRTy = derive2 { name="integIRTy"; version="1.0.5"; sha256="13p1r3rccsmaqwn0mrskr86jpww72aaq8zf2a8rnbpzkfrq9ni14"; depends=[abind doParallel foreach ltm MASS mclust]; }; interAdapt = derive2 { name="interAdapt"; version="0.1"; sha256="06ki36l1mrnd9lbm696a6gapr488dz8na4wvl9y1fif9hfv4zk25"; depends=[knitcitations knitr mvtnorm RCurl shiny]; }; interactionTest = derive2 { name="interactionTest"; version="1.0.1"; sha256="021qsg9rglc4vj3hkrvfm2snd77zna7ql2i0m5hf77yzxxc35jc6"; depends=[]; }; intercure = derive2 { name="intercure"; version="0.1.0"; sha256="0j71dqcbcfl1zpfidh3xys5h3ggyhrzq3avkdm9v18pv464x8xlv"; depends=[foreach iterators MASS Matrix survival]; }; + interep = derive2 { name="interep"; version="0.1.0"; sha256="1k1pp44sjjdyrbbyv5rlr1whrhmrk2nbn51jrgxxy5i0gwg2jza0"; depends=[glmnet MASS]; }; interferenceCI = derive2 { name="interferenceCI"; version="1.1"; sha256="19ky10nn6ygma6yy5h1krxx61aikh3yx5y39p68a944mz8f72vsn"; depends=[gtools]; }; interflex = derive2 { name="interflex"; version="1.0.4"; sha256="1w92h0ay0rx8gy9jcj179206lz9irg8g0ryl31p3ijqip73v55rm"; depends=[doParallel foreach ggplot2 lfe Lmoments lmtest mgcv pcse Rcpp RcppArmadillo sandwich]; }; interfr = derive2 { name="interfr"; version="0.1.0"; sha256="1wn7i8dsll1qq3v39hgpbqnkjc8f4wlffy73453rw9lpq61y2fgj"; depends=[CircStats colorSpec plotrix]; }; @@ -7632,7 +7961,7 @@ in with self; { intrinsicDimension = derive2 { name="intrinsicDimension"; version="1.1.0"; sha256="0mxg9dvhn5rr1rchpqzf5i1p37kvabcb9jyqbn49zgzcwdvm6cbs"; depends=[yaImpute]; }; introgress = derive2 { name="introgress"; version="1.2.3"; sha256="1j527gf7pmfy5365p2j2jbxq0fb0xh2992hj4d7dxapn4psgmvsk"; depends=[genetics nnet RColorBrewer]; }; intrval = derive2 { name="intrval"; version="0.1-1"; sha256="1p66cjpn43xib7rrnyv3jqr6bb49d3dxf888p8hxnr7kx9wfalkn"; depends=[]; }; - intsvy = derive2 { name="intsvy"; version="2.1"; sha256="0fsib9w1zvg3phmzrspdc3d44rl5p222j0j9xmdhpcq9r6sy0bp9"; depends=[foreign ggplot2 Hmisc memisc plyr reshape]; }; + intsvy = derive2 { name="intsvy"; version="2.3"; sha256="1hm7jkh8p3hspbb20185zgs5y4c3zp9wvj02m0s67qiq8sf5nv0h"; depends=[foreign ggplot2 Hmisc memisc plyr reshape]; }; intubate = derive2 { name="intubate"; version="1.0.0"; sha256="03ikqwai7wdahdfyzdy42xs8qpdhl9gmbak2qd82yxjl62956i8c"; depends=[]; }; inum = derive2 { name="inum"; version="1.0-0"; sha256="1b013ak4d0iiwk5a0s7vvsl34d0hs881iq7zrvah4skb89x82cpm"; depends=[libcoin]; }; invGauss = derive2 { name="invGauss"; version="1.1"; sha256="0l93pk2sh74dd6a6f3970nval5p29sz47ynzqnphx0wl3yfmmg9c"; depends=[optimx survival]; }; @@ -7640,13 +7969,15 @@ in with self; { investr = derive2 { name="investr"; version="1.4.0"; sha256="0l47bfwxssfr3maprkpwnmgxnxccl3ch4grc7f968iiqk83mcxw9"; depends=[nlme]; }; invgamma = derive2 { name="invgamma"; version="1.1"; sha256="12ga2y4wc9bc5zz6vimvxwgjpsx3ys3209nq63gscbw559ydxa5a"; depends=[]; }; io = derive2 { name="io"; version="0.3.0"; sha256="16mnbxq217ixfg2qfqrj97qqfpc5dj622hf80nwray6hp47lbw2s"; depends=[filenamer stringr]; }; + ioanalysis = derive2 { name="ioanalysis"; version="0.1"; sha256="13hkcks9sm7swmvd1lzzz5gqs02mjdqhrx06f7bkbf77dxckxb8z"; depends=[]; }; ioncopy = derive2 { name="ioncopy"; version="2.1.1"; sha256="1lkav3xvh2qazfmcxwisrjy8wzf639a4md71499jj5rmy650crys"; depends=[shiny]; }; ionflows = derive2 { name="ionflows"; version="1.1"; sha256="1k9yz82hbjwljyg4cmi675ppykrc2yq9md8x1hhkfxmp070whcxl"; depends=[Biostrings]; }; ionr = derive2 { name="ionr"; version="0.3.0"; sha256="18rv5n5gihb6pz36s45yj17sdjsbj4485k4lnggdjj1gbbjkz2ni"; depends=[gplots psych]; }; iopsych = derive2 { name="iopsych"; version="0.90.1"; sha256="0adxwxnb1zdlld3icdggx7cq6cp8z4h1jf105485w322a8c6s9ik"; depends=[mco mvtnorm]; }; iosmooth = derive2 { name="iosmooth"; version="0.94"; sha256="06xgzhjgb6pznjzfli193q7kn8sh5jmqsssgymwj98bw7iwn4q3z"; depends=[]; }; - iotables = derive2 { name="iotables"; version="0.2.4"; sha256="17xw0xjj6xy99f41ln043agaqcw6q3s0i99as06471kyscgan8n7"; depends=[dplyr eurostat forcats magrittr plyr tidyr]; }; + iotables = derive2 { name="iotables"; version="0.3.4"; sha256="08hw05samkkdvpbhjqr653brmciszah5faydiqvrdgl02yvjmdw4"; depends=[dplyr eurostat forcats lubridate magrittr plyr tidyr]; }; iotools = derive2 { name="iotools"; version="0.2-5"; sha256="0rn6kvlcijnhlwajh6nmi80qlamxgz0x3pn09yp4hyfpl3zxg1fz"; depends=[]; }; + ipc = derive2 { name="ipc"; version="0.1.0"; sha256="1y2py1ihh414vsjppy2qw9b4m0yn5mrbi5y69p9d6akj5bm61833"; depends=[R6 redux shiny txtq]; }; ipdmeta = derive2 { name="ipdmeta"; version="2.4"; sha256="0k9wqpmrvqdh73brmdzv86a2dbyddjyyyqzqgp1vqb3k48k009s2"; depends=[nlme]; }; ipdw = derive2 { name="ipdw"; version="0.2-6"; sha256="1jfixvywxdhnpqz62ld2c8n6yacg88q3y1n1aisqqb7szz0zf23z"; depends=[gdistance raster sp]; }; ipeaData = derive2 { name="ipeaData"; version="0.0.2"; sha256="1nggkcb8rrnc3d14nhzpf48f2dpf6jcsw54i40jcp7656jqv1jnb"; depends=[data_table dplyr httr jsonlite RCurl]; }; @@ -7654,16 +7985,16 @@ in with self; { ipfp = derive2 { name="ipfp"; version="1.0.1"; sha256="12aklhf9p70r9b2wi0qgbl835b4lil805c31n1ka4kdix4b4cpr4"; depends=[]; }; ipft = derive2 { name="ipft"; version="0.7.2"; sha256="0jifmkwac5yfl110200ljm3pas3321j068af9xqzqs0av20m8hps"; depends=[apcluster cluster dplyr ggplot2 Rcpp]; }; iplots = derive2 { name="iplots"; version="1.1-7.1"; sha256="1bz8n9cnx6zy3wsr49h55r0l5ikfl0xjg4r76fi4giid2a3ba4lf"; depends=[png rJava]; }; - ipred = derive2 { name="ipred"; version="0.9-6"; sha256="1vrw1pqcpnc04x1r2h9grdfm6bivs358sww5gg90jwlvxcw69lxq"; depends=[class MASS nnet prodlim rpart survival]; }; - iprior = derive2 { name="iprior"; version="0.7.1"; sha256="01sav9594grc413kf6s9jnp4hs4q9f9424qphm91xckydiqisaav"; depends=[doSNOW foreach ggplot2 mvtnorm Rcpp RcppEigen reshape2 scales]; }; + ipred = derive2 { name="ipred"; version="0.9-7"; sha256="0q53cqs46501wsd4cmfsmr78l8nv1hkbamk9m0ns5qy02df5r254"; depends=[class MASS nnet prodlim rpart survival]; }; + iprior = derive2 { name="iprior"; version="0.7.2"; sha256="1wc7f6gh0qas197jf78pb8wmazhddbny3l0w47f3v6fqwa581ls0"; depends=[doSNOW foreach ggplot2 mvtnorm Rcpp RcppEigen reshape2 scales]; }; ips = derive2 { name="ips"; version="0.0-7"; sha256="0r4394xbchv6czad9jz4ijnfz8ss3wfdvh7ixrdxic2xrw0ic90v"; depends=[ape colorspace XML]; }; - iptmnetr = derive2 { name="iptmnetr"; version="0.1.2"; sha256="1m5rw66qbv5pa91ywvir2i0wnwa0j6z75242bc468d2hakz62k99"; depends=[httr jsonlite]; }; - iptools = derive2 { name="iptools"; version="0.4.0"; sha256="0c3j5sl129xl75p14qr880ll1y3yss3zqg39zbj2jp6wcv9rvafx"; depends=[AsioHeaders BH ISOcodes Rcpp]; }; - ipumsr = derive2 { name="ipumsr"; version="0.2.0"; sha256="0rmcl2jq12yvc5lqyi1mi5ggl59w2g6zvf3w1zpnb261vlrvikda"; depends=[dplyr haven purrr raster Rcpp readr rlang stringr tibble tidyr xml2 zeallot]; }; + iptmnetr = derive2 { name="iptmnetr"; version="0.1.5"; sha256="02lljbbr2sm90sgyjv6a17mbh758n93qqxfr900g0m557nsv35i8"; depends=[httr jsonlite]; }; + iptools = derive2 { name="iptools"; version="0.6.0"; sha256="1k58czfq8g2q1gjxnhkxhr0znqmmyyaz45vffd57pdq1199wcdm1"; depends=[AsioHeaders BH Rcpp stringi triebeard]; }; + ipumsr = derive2 { name="ipumsr"; version="0.3.0"; sha256="114q2j6sadzg4s1jc66sxasj86hsipmf874dbhk1z238wj948py8"; depends=[cli crayon dplyr haven hipread pillar purrr R6 raster Rcpp readr rlang stringr tibble tidyr xml2 zeallot]; }; ipw = derive2 { name="ipw"; version="1.0-11"; sha256="11a34j6lp329ran2r9kxn8184kfmibkdig74lsy6lj4w4w0d71cm"; depends=[geepack MASS nnet survival]; }; ipwErrorY = derive2 { name="ipwErrorY"; version="1.0"; sha256="1n1j1crxnnfkg38drgg8rhc13y6s8hcsr5g0f6hi4v680dgrkhmp"; depends=[nleqslv]; }; iqLearn = derive2 { name="iqLearn"; version="1.5"; sha256="1zn43zvx0mjzh96bm73scacmladamy8jmhxim7hcfq39cfhiw3c8"; depends=[]; }; - irace = derive2 { name="irace"; version="3.0"; sha256="1p7amffds888zfg05lfkmvl2ciydmf8bn42g2kgfy13k9r2bk96r"; depends=[]; }; + irace = derive2 { name="irace"; version="3.1"; sha256="0r3hbsx8c40kxs62xy3pnivy6ava2xrg0h39j95zrmiqdma77sxq"; depends=[]; }; ircor = derive2 { name="ircor"; version="1.0"; sha256="07apa4l4ib11xw25d44b403s3la29sqlid13q41hjrlfxafm91ld"; depends=[]; }; irlba = derive2 { name="irlba"; version="2.3.2"; sha256="0f7wb12wa0zbyllk5adcf4f517wgjpkhsx4j176i9ax6xy7jvprz"; depends=[Matrix]; }; irr = derive2 { name="irr"; version="0.84"; sha256="0njxackqj8hyf9j1yszwxbnaxgp27fc2bwyyf7dip72wc12f81n5"; depends=[lpSolve]; }; @@ -7676,7 +8007,7 @@ in with self; { irtreliability = derive2 { name="irtreliability"; version="0.1-1"; sha256="15qs8bvgrwajj5kfd57rd34l1p2805ilyd7w60ngrqc14d6az9d2"; depends=[fastGHQuad ltm mirt]; }; isa2 = derive2 { name="isa2"; version="0.3.5"; sha256="17vm0906szhrh2k5x694vwcfijbzmd1v3axpszfybc0lgds437cv"; depends=[lattice]; }; isdals = derive2 { name="isdals"; version="2.0-4"; sha256="15p432fskdz2r8523cw122mfhvrq8vdsdsrd0kz9yfin4b5z3zfh"; depends=[]; }; - isdparser = derive2 { name="isdparser"; version="0.2.0"; sha256="061wi94rj3iyvf3dgvcjy0x46hvwhr4ifx0jhirz44bj0c8g3h7j"; depends=[data_table tibble]; }; + isdparser = derive2 { name="isdparser"; version="0.3.0"; sha256="1fdp4zk3pzpi5m026rlsrhyl4r5rfxy9sr8d04w2i0316rziv7kc"; depends=[data_table tibble]; }; isingLenzMC = derive2 { name="isingLenzMC"; version="0.2.5"; sha256="1pd1s3a1rv7vlxd5db1pgwdjps8w5im4zz2h3qzal9cwbis0hb51"; depends=[]; }; island = derive2 { name="island"; version="0.2.1"; sha256="0fg5nlg5iq3cl3i8xx9qq4vvizdklg6adjxmp2qrg0dyfvkllhsq"; depends=[]; }; ismev = derive2 { name="ismev"; version="1.42"; sha256="19giigxwf62cdkf7mglsca649n2ignb9bxyg9zl7im1vm3ngnmqd"; depends=[mgcv]; }; @@ -7694,15 +8025,16 @@ in with self; { itan = derive2 { name="itan"; version="1.0"; sha256="082vh5gvh8hgyhk8nswll16ldhnp0pfpxnz1yx05zsc4nzvm92cf"; depends=[ggplot2 reshape]; }; itcSegment = derive2 { name="itcSegment"; version="0.8"; sha256="032wj34313m3wigdfalq356srdzg0cvnvxnaxwxws6bc44r78izf"; depends=[maptools raster rgeos sp]; }; iteRates = derive2 { name="iteRates"; version="3.1"; sha256="1dycmlm3vldc60wz2jjdfbla14383911zfahgal5mx8whxwq95c5"; depends=[ape apTreeshape geiger gtools MASS partitions VGAM]; }; + itemanalysis = derive2 { name="itemanalysis"; version="1.0"; sha256="1ksbd69mca45jlr2gpars87cf4jfm5rx6sz009sv6a83x831x5rq"; depends=[car ggplot2 polycor]; }; iterLap = derive2 { name="iterLap"; version="1.1-3"; sha256="079d4hxf1ha8pgibzb4r1yk7xqpzndd7hjbp8294qb26jvvcnd8q"; depends=[quadprog randtoolbox]; }; - iterators = derive2 { name="iterators"; version="1.0.9"; sha256="16sycjq912ix52fjxjhcwiaqr0yj1v5iqmrvjljd3z857031w06y"; depends=[]; }; - iterpc = derive2 { name="iterpc"; version="0.4.0"; sha256="0py11pvhl71v9fl0a6n317va8cggih4l0afn6yldnah9ai2cakvy"; depends=[arrangements gmp iterators]; }; + iterators = derive2 { name="iterators"; version="1.0.10"; sha256="1s3iykfvccpnzs73z90rx18qvbvgw2dgl4nfcrvm5m1850qb5qd9"; depends=[]; }; + iterpc = derive2 { name="iterpc"; version="0.4.1"; sha256="0q08bdr5v849z2431f2sdh9f7aagjxm34si0kn0bp85dnlqri8rx"; depends=[arrangements gmp iterators]; }; itertools = derive2 { name="itertools"; version="0.1-3"; sha256="1ls5biiva10pb1dj3ph4griykb9vam02hkrdmlr5a5wf660hg6xn"; depends=[iterators]; }; itertools2 = derive2 { name="itertools2"; version="0.1.1"; sha256="0yra3x9ddvn5pp3jibm69205zazv81bz0cflw4mdvxpqadaf9f96"; depends=[iterators]; }; itree = derive2 { name="itree"; version="0.1"; sha256="164zgr142hcp9plnbccs6m823p4m0prk73bvp54bc7bqnqmc3d9a"; depends=[]; }; itsadug = derive2 { name="itsadug"; version="2.3"; sha256="0wzdy82h05264n9cr84w5j98vz24was9hh1y0wdp56ws3dfbav9m"; depends=[mgcv plotfunctions]; }; - itsmr = derive2 { name="itsmr"; version="1.8"; sha256="1w2sjdw9s4smsqdbjabj9jjync0fb931aajjbqhm49cx0g72hi8g"; depends=[]; }; - itunesr = derive2 { name="itunesr"; version="0.1.1"; sha256="1h6yyqcmvm9dfwscmq5ghqi3r4fdracw1n206058j9bdjpakxqkl"; depends=[curl jsonlite lubridate xml2]; }; + itsmr = derive2 { name="itsmr"; version="1.9"; sha256="0dmijaq6q31irwrjqv5gq1yfbgggwb3m6rwbg4lx1r9l3cqays7i"; depends=[]; }; + itunesr = derive2 { name="itunesr"; version="0.1.3"; sha256="1czwkrqy3jqw1x0z5zj2kvp4p11s5zdiswwhx9jfxdcsg86zhr45"; depends=[curl jsonlite lubridate xml2]; }; ivbma = derive2 { name="ivbma"; version="1.05"; sha256="0d7kg6pkdx1aj1i6kqs2r7j1klxxwymml63qnrq6a6fia3ck9kk9"; depends=[]; }; ivfixed = derive2 { name="ivfixed"; version="1.0"; sha256="0a26zrkvz0ffq4zxdx5vhr1nvsi9c15s6gvc1zy2pddjz31x2xi5"; depends=[Formula]; }; ivlewbel = derive2 { name="ivlewbel"; version="1.1"; sha256="0ykcfikm2i28s3fm6zzx8cjvpwhksg8an0rfr0b35gf7p69brgag"; depends=[gmm lmtest plyr]; }; @@ -7716,56 +8048,66 @@ in with self; { jaatha = derive2 { name="jaatha"; version="3.2.0"; sha256="00886j0cabrq6a69w8s1gsfkmx1wqs1vpxjafpm71msk54r0dj55"; depends=[assertthat R6]; }; jaccard = derive2 { name="jaccard"; version="0.1.0"; sha256="1dmla6qc1k8iw2d7zfjqhf13gqd2lpsrj09yh47ljf994fpab936"; depends=[dplyr magrittr qvalue Rcpp]; }; jackknifeKME = derive2 { name="jackknifeKME"; version="1.2"; sha256="0c5shl6s46kz7a623gccqk2plrrf2g29nwr6vbny6009pq3jvzam"; depends=[imputeYn]; }; - jackstraw = derive2 { name="jackstraw"; version="1.1.1"; sha256="18iah8sq64p7c6rxs21w8rbxvbmbh03jzqbam1ilp46ayfqzk9qc"; depends=[corpcor lfa]; }; + jackstraw = derive2 { name="jackstraw"; version="1.2"; sha256="1aciv0km63nqhiakqvy3v8bz31mjlknfdz2lkcv2g3pfhwi3fxh7"; depends=[cluster ClusterR corpcor lfa qvalue]; }; jacpop = derive2 { name="jacpop"; version="0.5"; sha256="056c82d4a10rgq0p4p63y9i94dy1kqp3yh7xms9nx9q2xb940xb5"; depends=[]; }; - jagsUI = derive2 { name="jagsUI"; version="1.4.9"; sha256="1c2fq7q3kvf092j6r9ci0gigjpb61dj19phzm8mqi05q2k08siin"; depends=[coda lattice rjags]; }; + jagsUI = derive2 { name="jagsUI"; version="1.5.0"; sha256="0cfixhv4fabka13xvnglwacgpadhdr12w6lk563zfz83192r7h8g"; depends=[coda lattice rjags]; }; james_analysis = derive2 { name="james.analysis"; version="1.0.1"; sha256="1b2n4ds4ivfk564z87s2rxjl9j0y4drd3cmyv8jqpccmdvx1137d"; depends=[naturalsort rjson]; }; janeaustenr = derive2 { name="janeaustenr"; version="0.1.5"; sha256="1wyn4qc28a3sval8shmyi2d7s4nl3jh96s8pzq871brxcmrncbwr"; depends=[]; }; - janitor = derive2 { name="janitor"; version="1.0.0"; sha256="0q6mq8s8k7yyx2459nhjvlxjaqxn61k3dpxdhcq0fyk37dafva79"; depends=[dplyr magrittr purrr rlang snakecase tidyr]; }; + janitor = derive2 { name="janitor"; version="1.1.1"; sha256="0sqp6sajdzs8wwvsfkkfpgak9fzknjfffqpgjm6an7spdvsl2js0"; depends=[dplyr magrittr purrr rlang snakecase tidyr]; }; jaod = derive2 { name="jaod"; version="0.1.0"; sha256="0wh1nlfhks4c1dga6h7554pg44pamj73x5in71k2xw0yp292zm6x"; depends=[crul jsonlite tibble]; }; + jarbes = derive2 { name="jarbes"; version="1.7.0"; sha256="1wvix7a1wv6mb4i1r3axixyvrwg6sj5pnc22ajri0d3dbdmklv23"; depends=[ggExtra ggplot2 gridExtra MASS mcmcplots R2jags rjags]; }; jcext = derive2 { name="jcext"; version="0.1"; sha256="18vmf57l2kv3rvi6laqp948m8mjkdxdy0vi4xp68480b2mjmvij1"; depends=[ggplot2 maps RColorBrewer rworldmap sp stringr]; }; - jcolors = derive2 { name="jcolors"; version="0.0.2"; sha256="0d71sdvj7hwafj0sx2z1nyza5j2lfd8y5yj1p94yrw32wi7b89jn"; depends=[ggplot2 scales]; }; + jcolors = derive2 { name="jcolors"; version="0.0.3"; sha256="1mzpvm5mhmr2ahwz1lnqvp1cs805jh0zlfwspvqwr0sfbzmmkrib"; depends=[ggplot2 scales]; }; jdx = derive2 { name="jdx"; version="0.1.3"; sha256="0d9m0sbdrlh8jfijn5mrfw8y2bpj5vxm0bcjlcc42ipxj47962l9"; depends=[rJava]; }; - jeek = derive2 { name="jeek"; version="1.1.0"; sha256="0s5gsgsznn8n39s0s35qxdl0q7bkvqlrf9xhland3xlzcrvpyp2g"; depends=[igraph lpSolve pcaPP]; }; + jeek = derive2 { name="jeek"; version="1.1.1"; sha256="15n0k0i1wwp72g8zqrjmglnckab3p65q3rnpg6d6h8hjcpv82i7g"; depends=[igraph lpSolve pcaPP]; }; + jetpack = derive2 { name="jetpack"; version="0.3.1"; sha256="13m555bdx4f57wy3lxgllhrbd2x7vwvblvms6yajsdpv0x6g7n1x"; depends=[crayon desc devtools docopt httr packrat]; }; jetset = derive2 { name="jetset"; version="3.4.0"; sha256="0c99h5npsv2gf5d59s4qhkaqmjhbwa3prcykk24wzhnpfq6y6xhp"; depends=[AnnotationDbi org_Hs_eg_db]; }; jiebaR = derive2 { name="jiebaR"; version="0.9.99"; sha256="1g39z9ms975ig2j9nd6nqja1l8gy50fa9pwlz563xk6p2z6v058j"; depends=[jiebaRD Rcpp]; }; jiebaRD = derive2 { name="jiebaRD"; version="0.1"; sha256="1wadpcdca4pm56r8q22y4axmqdbb2dazsh2vlhjy73rpymqfcph4"; depends=[]; }; + jipApprox = derive2 { name="jipApprox"; version="0.1.1"; sha256="0kgx7v8fyfdh8kdz8jnh6y6zrf7ivgqjgagpddxnynldzcrc2ml7"; depends=[sampling]; }; + jjb = derive2 { name="jjb"; version="0.1.0"; sha256="0izpvban8v85g6w2mnmimhdh4yg6kcaf046v3jjba368nsj67q9n"; depends=[]; }; jmcm = derive2 { name="jmcm"; version="0.1.8.0"; sha256="0nv30shwd1219cvs9kaql0n7ppwqngj3avf2qd7nzrnbqp2gl23h"; depends=[Formula Rcpp RcppArmadillo]; }; jmdem = derive2 { name="jmdem"; version="1.0"; sha256="1qz2l02m4gnxrm1ankr5qqlskl8amphzj8r763yas218fvzfa34q"; depends=[statmod VGAM]; }; + jmdl = derive2 { name="jmdl"; version="0.3.0"; sha256="0167yj368lh1n79jwbqs4g2asb67hfmgh97519linmfpx0n6xdpa"; depends=[boot Formula MASS minqa mnormt mvtnorm]; }; jmetrik = derive2 { name="jmetrik"; version="1.1"; sha256="1if1kxx8apgkbxpkjnlj2lpsfnyj2splsg1p3j5vxa7q6wx70f9j"; depends=[]; }; jmotif = derive2 { name="jmotif"; version="1.0.3"; sha256="1llmrksajrd35kfdzq2vqfm17yv5kwark6gz3rvyzcmbrqk5spqv"; depends=[Rcpp RcppArmadillo]; }; jmuOutlier = derive2 { name="jmuOutlier"; version="1.4"; sha256="1vrihjvq8l2q7d3z80fkzzzwg6xmnfi8sipsgwic1lcbv6vnqndp"; depends=[]; }; - jmv = derive2 { name="jmv"; version="0.8.6.2"; sha256="0an3ni6lz85cfcra69mycka6x1hgaas6rv6ybbnikmrv846sx03n"; depends=[afex BayesFactor car emmeans GGally ggplot2 ggridges GPArotation jmvcore lavaan MASS multcomp mvnormtest nnet PMCMR psych R6 ROCR vcd vcdExtra]; }; - jmvcore = derive2 { name="jmvcore"; version="0.9.1"; sha256="01qv3m1vsabydlkshmqrg15y8nnrzkg49pq2ryxi3r6jw486qq1s"; depends=[base64enc R6 rjson stringi]; }; + jmv = derive2 { name="jmv"; version="0.9.4"; sha256="141k86skmkfl3pxgay5mginpishnwy3k40cxrj2qbkrzlnx1b9yk"; depends=[afex BayesFactor car emmeans GGally ggplot2 ggridges GPArotation jmvcore lavaan MASS multcomp mvnormtest nnet PMCMR psych R6 ROCR vcd vcdExtra]; }; + jmvconnect = derive2 { name="jmvconnect"; version="1.0.4"; sha256="1zbhinnd8ngq1824lj3610s1v0vzxjbsvgb7p0q0bjdr3gdpc4n9"; depends=[BH evaluate httr jmvcore rappdirs Rcpp]; }; + jmvcore = derive2 { name="jmvcore"; version="0.9.4"; sha256="1m47yn81y2g3kba16dn7s3jfw8pp4rzbrlqr3nmdrivp093fqcn3"; depends=[base64enc R6 rjson stringi]; }; jocre = derive2 { name="jocre"; version="0.3.3"; sha256="1i9n3r16pq6r4sy3fc1rxpil5ws8v2is0xdxafinvwr1hzkv1gz6"; depends=[boot KernSmooth plyr TSP]; }; joinXL = derive2 { name="joinXL"; version="1.0.1"; sha256="1l76bckjz5r1kdsh0s10i0gpca12rkfkp14346fn7avdcw73v23i"; depends=[data_table openxlsx R_utils rChoiceDialogs Rcpp readxl rJava timeDate timeSeries]; }; joineR = derive2 { name="joineR"; version="1.2.4"; sha256="05wr7gr3mnsfj8a1m5v1b71gh3fc4pyhj6rqapls7iwrkywbf1b6"; depends=[lattice MASS nlme statmod survival]; }; joineRML = derive2 { name="joineRML"; version="0.4.2"; sha256="06a7iicq3fngsmmi8qcz2fdzdzvym5s70s3aaqlzxnl4sj9km3g2"; depends=[cobs doParallel foreach ggplot2 lme4 MASS Matrix mvtnorm nlme randtoolbox Rcpp RcppArmadillo survival]; }; joineRmeta = derive2 { name="joineRmeta"; version="0.1.1"; sha256="0d9wwb3v43v30xjy67j366mhwixzz79bm67j01fqmcdsnmn3qpjn"; depends=[ggplot2 gridExtra gtools JM joineR lme4 MASS Matrix meta msm nlme statmod survival]; }; - joint_Cox = derive2 { name="joint.Cox"; version="2.15"; sha256="1lcli1p1qv0ws1zqs845wb2swhm5vvbixsxs8yzihc5r7igyalg7"; depends=[survival]; }; + joint_Cox = derive2 { name="joint.Cox"; version="2.16"; sha256="1qlynvahk57ayndc23i0jr8a702z4k1darf4y5i90lza40f32jhp"; depends=[survival]; }; jointDiag = derive2 { name="jointDiag"; version="0.3"; sha256="0pra70jcnkqkzrxz5vc6lzi637rp5w8n9wbv9ix718vnd0j3fm3n"; depends=[]; }; jointNmix = derive2 { name="jointNmix"; version="1.0"; sha256="0ibh7hqkpzlfk3bk4d2dd64jhr8cvw563k082vwnljiam7k5nj4b"; depends=[]; }; jointPm = derive2 { name="jointPm"; version="2.3.1"; sha256="1c2cn9sqwfyv9ksd63w8rrz0kh18jm2wv2sfdkgncjb7vfs4hbv9"; depends=[]; }; jointseg = derive2 { name="jointseg"; version="1.0.1"; sha256="0wa531b5shrxhnzflfjqn2wypfb565qc2c8wngysgrgyj1kjq1pl"; depends=[acnr DNAcopy matrixStats]; }; - jomo = derive2 { name="jomo"; version="2.6-2"; sha256="0zyqwa2y08asj9xqwnngh6da1b9cqcx8pzc9cxwrmgnxd5nnsjb7"; depends=[lme4 survival]; }; + jomo = derive2 { name="jomo"; version="2.6-4"; sha256="05g2rj9g7rgyb22b0gybw042nydyqsqsb31v05hifzavri8ij01x"; depends=[lme4 MASS ordinal survival]; }; jose = derive2 { name="jose"; version="0.2"; sha256="0vgmr5kmps6yk10bbzrxz2d3y7jk0w1rxpm9gx510kpnqbj325xz"; depends=[jsonlite openssl]; }; jpeg = derive2 { name="jpeg"; version="0.1-8"; sha256="05hawv5qcb82ljc1l2nchx1wah8mq2k2kfkhpzyww554ngzbwcnh"; depends=[]; }; jpmesh = derive2 { name="jpmesh"; version="1.1.1"; sha256="0smfv7wh0441aqx0c0km0kr54lsvqixn2chqvqn5sd3758k5id95"; depends=[leaflet magrittr miniUI purrr rlang sf shiny tibble units]; }; jpndistrict = derive2 { name="jpndistrict"; version="0.3.2"; sha256="0n935zwxjjnl1w0xd790gm22pdm8ng48x79iazfkjzj8dpwymdsg"; depends=[dplyr jpmesh leaflet magrittr miniUI purrr rlang sf shiny tibble tidyr]; }; - jqr = derive2 { name="jqr"; version="1.0.0"; sha256="1jdr3wb1fd2zjmmdicqhskgk7xbn5y6998fi9szj86p8smfckl74"; depends=[lazyeval magrittr]; }; + jqr = derive2 { name="jqr"; version="1.1.0"; sha256="00x5a61bsn2ywzc2haz19f6h0sqhlx7z3k1n9y0729dwm4id89ms"; depends=[lazyeval magrittr]; }; jrich = derive2 { name="jrich"; version="0.60-35"; sha256="1y486bfqmfg3f22wm0lfk3lh20ljgi8qrgn5jji0f417wh48nf0x"; depends=[ape]; }; jrvFinance = derive2 { name="jrvFinance"; version="1.4.0"; sha256="09gr8w3y0cjlwjhr72ml05y22m868hnvxwa3mwxdcvfb7nb1dmxz"; depends=[]; }; js = derive2 { name="js"; version="1.1"; sha256="1xsdr14k4djcd1nqybvfzhviics4igsj8yz3r0j2nqhin2wjynlf"; depends=[V8]; }; jsTree = derive2 { name="jsTree"; version="1.0.1"; sha256="0n754illyw29bprll676k9qm5vk5h8qss6gb8lls57kdzj51x2jz"; depends=[data_table htmlwidgets jsonlite]; }; + jsonify = derive2 { name="jsonify"; version="0.1.1"; sha256="0z6af6sxzybm6jy350pn0g16mm3kzwb6vkf3qa6r20ca2rb2kynh"; depends=[rapidjsonr Rcpp]; }; jsonld = derive2 { name="jsonld"; version="2.0"; sha256="0mplsx2fq7pvxli1rd851cqhkaxk3y93aa46x57yf4z5rgjy34vm"; depends=[curl jsonlite V8]; }; jsonlite = derive2 { name="jsonlite"; version="1.5"; sha256="00lfg464jhf7k01bal9pcjvbdf5cxk6xi2h46hccp1x3h883g434"; depends=[]; }; + jsonstat = derive2 { name="jsonstat"; version="0.0.2"; sha256="0p0d3snl1971p5ikrkmwqrjjh4fy0b89qk3rnd1dayfb0r80xnnj"; depends=[cli dplyr jsonlite rlang]; }; jsonvalidate = derive2 { name="jsonvalidate"; version="1.0.0"; sha256="08c1s8fk95np4l6km077dmd1nibhhggi80f5465hhbq521gm0awl"; depends=[V8]; }; jsr223 = derive2 { name="jsr223"; version="0.3.2"; sha256="00i90b37811sva8f9bd50xxvjcn7rag9hq5ya953v6whm370r737"; depends=[curl jdx R6 rJava]; }; + jstor = derive2 { name="jstor"; version="0.3.4"; sha256="1fqnvhisv4kf3anck2zfrkg2g46y78hh3y47xhg79p6gcc2cxx2i"; depends=[cli crayon dplyr furrr magrittr pryr purrr readr rlang stringr tibble tidyr xml2]; }; jtGWAS = derive2 { name="jtGWAS"; version="1.5.1"; sha256="06cgsncgrqslxcc7s0lb3zwa85bhzkmjzz3f04716xpzwa186vxq"; depends=[Rcpp]; }; - jtools = derive2 { name="jtools"; version="1.0.0"; sha256="0w0yw0pl2arwx4d5w83d73y7cq9papqkdg6sfk9qj1whgcd28chv"; depends=[cli crayon ggplot2]; }; + jtools = derive2 { name="jtools"; version="1.1.1"; sha256="0c7ygllgq5vyb4w188l44f5q8bn1jn2kw3yvc1f1zi0ni1ngsf7g"; depends=[cli crayon ggplot2 magrittr]; }; jtrans = derive2 { name="jtrans"; version="0.2.1"; sha256="18zggqdjzjhjwmsmdhl6kf35w9rdajpc2nffag4rs6134gn81i3m"; depends=[]; }; + jubilee = derive2 { name="jubilee"; version="0.2.5"; sha256="0j16325vxlr797gr39g6mdrgfas1qvxhajfsrmzr4hflqibw03gk"; depends=[data_table readxl xts yaml zoo]; }; jug = derive2 { name="jug"; version="0.1.7"; sha256="01m6hyr26f6zih49pz2bmmr8ypdl1qiz0wv3padcy68kaccf44a4"; depends=[base64enc httpuv infuser jsonlite magrittr mime R6 webutils]; }; - junctions = derive2 { name="junctions"; version="1.0.1"; sha256="1mfzhizfzpsrlc23kdi658a1svw4p3wh1la7zpf5fk2bbksw0v97"; depends=[Rcpp]; }; + junctions = derive2 { name="junctions"; version="1.1"; sha256="1v5jx4mw6x4q3fivsvidd49b8czzbvv5icj39h6jrpmqvrnc8w32"; depends=[Rcpp]; }; junr = derive2 { name="junr"; version="0.1.3"; sha256="0wcglpziyi6z4n7w70srziljba3jkb27iqxbxz4kk6774c7valbf"; depends=[httr jsonlite]; }; jvnVaR = derive2 { name="jvnVaR"; version="1.0"; sha256="0zh0dc6wqlrxn5r2yv9vkpyfb8xsbdidkjv9g6qr94fyxlbs4yci"; depends=[]; }; jwutil = derive2 { name="jwutil"; version="1.2.1"; sha256="1n9q2p167cmp134p8qpknfg4avi4nzxqmazyr1gs63sk5x51yk48"; depends=[Rcpp testthat]; }; @@ -7793,41 +8135,42 @@ in with self; { keep = derive2 { name="keep"; version="1.0"; sha256="12803hhrs9v94rv6qaihk1f1ls7lx4cy2pa30v4p1r2z9afx9bjf"; depends=[]; }; kehra = derive2 { name="kehra"; version="0.1"; sha256="1cc0bmbg0dncay50ap7cs2516qngzz3ddaab0jk5r6lwfq87h8qx"; depends=[Hmisc raster reshape2 sp stringr xts zoo]; }; kelvin = derive2 { name="kelvin"; version="2.0-0"; sha256="04xdgpmysksm79m3vqmb4zra3pq09nv99w4fbdla1lmy7z8pkdrk"; depends=[Bessel]; }; - kendallRandomWalks = derive2 { name="kendallRandomWalks"; version="0.9.2"; sha256="1h02394gq8cmz7bw6k2yg4qjzmns7i6bzafkdw3x9ycf4d9l6p80"; depends=[dplyr EnvStats ggplot2 nleqslv tibble tidyr]; }; + kendallRandomWalks = derive2 { name="kendallRandomWalks"; version="0.9.4"; sha256="1mfqblvsn9p6gdcnbypfpzk0xzn6bz1ajbrkz2dap5w35dia3kxa"; depends=[actuar dplyr ggplot2 tibble]; }; kequate = derive2 { name="kequate"; version="1.6.1"; sha256="1rjya1rnlfk2ziiwhkgshlyk3g0388591q3q01a3vgmgsb3cpxl6"; depends=[equateIRT ltm mirt]; }; - keras = derive2 { name="keras"; version="2.1.6"; sha256="1xgxf9xg8b7dpnbc5dnysd4s2n74877s16f353hrbybf6m768kik"; depends=[magrittr R6 reticulate tensorflow tfruns zeallot]; }; + keras = derive2 { name="keras"; version="2.2.0"; sha256="0h6rx44c7w0d8gvnchbqfblqmayh47v14vg6ilnfkcb35djws3la"; depends=[magrittr R6 reticulate tensorflow tfruns zeallot]; }; kerasR = derive2 { name="kerasR"; version="0.6.1"; sha256="1yi7710vgcwz0jhishbga41sc6qyk83a0avmq01dvqjsz3cdfsfc"; depends=[reticulate]; }; - kerasformula = derive2 { name="kerasformula"; version="1.0.0"; sha256="1hhzrrg4ryajzlih8wj2j0z3wb0ksi5zycaf9njvbd0jvfxxbzdy"; depends=[dplyr keras Matrix]; }; + kerasformula = derive2 { name="kerasformula"; version="1.5.1"; sha256="1b4mq1y41lz8maszlrm7w907vcz7in8napfnhas7dgal1kid4mcf"; depends=[dplyr ggplot2 keras Matrix]; }; kerdiest = derive2 { name="kerdiest"; version="1.2"; sha256="16xj2br520ls8vw5qksxq9hqlpxlwmxccfk5balwgk5n2yhjs6r3"; depends=[chron date evir]; }; - kergp = derive2 { name="kergp"; version="0.2.0"; sha256="1xamj19v84m1f9ls8ac8xbm6airyjf96i1l48yy4l2rvjdmx6m9l"; depends=[doParallel MASS numDeriv Rcpp testthat]; }; + kergp = derive2 { name="kergp"; version="0.4.0"; sha256="0b5milibiacxmflrbddl6fjkc54cv0q5w8dqpxikx2vly4as9g5z"; depends=[doFuture doParallel MASS nloptr numDeriv Rcpp testthat]; }; kernDeepStackNet = derive2 { name="kernDeepStackNet"; version="2.0.2"; sha256="04bdggxvggmppp289n2zw6ijdm7y05gws6z7bp6fr8n1zsxy2w3c"; depends=[caret DiceKriging DiceOptim GA GenSA glmnet globalOptTests lhs matrixStats mvtnorm Rcpp RcppEigen]; }; kerndwd = derive2 { name="kerndwd"; version="2.0.2"; sha256="0nf5hyb274gn02n4lygwryv1jaqff77i040bd8gs1xykgvy6jxny"; depends=[]; }; kernelFactory = derive2 { name="kernelFactory"; version="0.3.0"; sha256="001kw9k3ivd4drd4mwqapkkk3f4jgljiaprhg2630hmll064s89j"; depends=[AUC genalg kernlab randomForest]; }; kernelboot = derive2 { name="kernelboot"; version="0.1.5"; sha256="0m31akhya7390lbkw0cjxcrzw28njbz4smd35m93aarb2lgpcj4k"; depends=[future future_apply Rcpp]; }; - kernlab = derive2 { name="kernlab"; version="0.9-26"; sha256="0xv0slf3ggw3sswsi34416lb1g3h1pqkrr2h7r1n1kvgii3l0jcm"; depends=[]; }; + kernlab = derive2 { name="kernlab"; version="0.9-27"; sha256="1m0xqf6gyvwayz7w3c83y32ayvnlz0jicj8ijk808zq9sh7dbbgn"; depends=[]; }; kernplus = derive2 { name="kernplus"; version="0.1.1"; sha256="1dxw1qk5gx7g05kgsbh5436r7mbv77631zjs0c4ibpscaw77g475"; depends=[circular KernSmooth mixtools]; }; kernscr = derive2 { name="kernscr"; version="1.0.3"; sha256="0h3xv76dxch8kv4z7cgx60iaikk6906n75c4kc1mccpw0jvyxrvb"; depends=[MASS mvtnorm]; }; kexpmv = derive2 { name="kexpmv"; version="0.0.3"; sha256="1nx2bpyc06vlr78nhig4zaaygphjp4wqsz9jzhs4qx8wy3kh7rmy"; depends=[Rcpp SparseM]; }; keyholder = derive2 { name="keyholder"; version="0.1.2"; sha256="157k39acn8732g0ha9m402v5hhqnc34qpghvhg430dga2r5g3cxh"; depends=[dplyr rlang]; }; keyplayer = derive2 { name="keyplayer"; version="1.0.3"; sha256="0j4n46r9ivkbzqz8g22dq2bpmx7bs05yb5qp27p9jnfh5x19v2ds"; depends=[igraph matpow sna]; }; keypress = derive2 { name="keypress"; version="1.1.1"; sha256="0w8hcxxx47zyz2cbz2s8va2rfb6s2ziw9ck1slq9kh3aqsx3i9g0"; depends=[]; }; - keyring = derive2 { name="keyring"; version="1.0.0"; sha256="0asa62cgs08k0g0yhvsxr2k8rfxy3hqkd4hrv0396394v13b08w5"; depends=[assertthat getPass openssl R6]; }; + keyring = derive2 { name="keyring"; version="1.1.0"; sha256="1hpfd4hbx43i39l995rg86kfxi7wlyla1gv8mwcdr4xx7z122zzq"; depends=[assertthat filelock getPass openssl R6 rappdirs sodium yaml]; }; keyringr = derive2 { name="keyringr"; version="0.4.0"; sha256="04f0z6mqj75l5qhiab0zvjsvz3jz1bp6dfazkpgihjmls5k11dnh"; depends=[stringr]; }; kfda = derive2 { name="kfda"; version="1.0.0"; sha256="0861hzry55gj8ykdd8cwil1wb7234pkmipp4v1749fpmzggq1xgi"; depends=[kernlab MASS]; }; kfigr = derive2 { name="kfigr"; version="1.2"; sha256="0hmfh4a95883p1a63lnziw8l9f2g0fn0xzxzh36x9qd9nm7ypmkw"; depends=[knitr]; }; kgc = derive2 { name="kgc"; version="1.0.0.2"; sha256="14zbcimnglh5jj07dcaxp1dfjaz8syswy29nf8z39qmslv1hg9kk"; depends=[plyr shiny shinythemes]; }; kgschart = derive2 { name="kgschart"; version="1.3.5"; sha256="1gdsrmnv8z99cldvig7grlq8gsbv3wpx7zdamw85lz563n4ln94d"; depends=[abind deepnet ggplot2 gridExtra magrittr matrixStats nnet png shiny stringr]; }; - kidney_epi = derive2 { name="kidney.epi"; version="1.0.0"; sha256="1n264l2snbmx72hp67gzkwwzkmivi1f4nddh3zhxvy028y47w643"; depends=[]; }; + khroma = derive2 { name="khroma"; version="1.0.0"; sha256="0bws0p5gyla7vlplayqqjl7rygwk5jz3dwbk0rlz38hcafrlzh1l"; depends=[]; }; + kidney_epi = derive2 { name="kidney.epi"; version="1.1.0"; sha256="191yrqdviwvfl62c62qqfa154hglxpfwcxllhgwlm8nsysg46z5i"; depends=[]; }; kimisc = derive2 { name="kimisc"; version="0.4"; sha256="0nbjspbq9akhmamfdn192p5b6ki7xqhp422ih6v77xsnrhl5m24z"; depends=[memoise plyr pryr]; }; kin_cohort = derive2 { name="kin.cohort"; version="0.7"; sha256="0wijsjz0piz5j9rm2nr3d5dfpiyba740mbfbkmfll9pz72s58wz8"; depends=[survival]; }; kineticF = derive2 { name="kineticF"; version="1.0"; sha256="1k54zikgva9fw9c4vhkc9b0kv8sq5pmc962s8wxr6qv97liv9p46"; depends=[circular lqmm MASS plotrix sp splancs]; }; kinfit = derive2 { name="kinfit"; version="1.1.14"; sha256="0gb43pghgllb9gzh8jzzpfmc46snv02ln4g3yqsdah3cyqnck0ih"; depends=[]; }; kinship2 = derive2 { name="kinship2"; version="1.6.4"; sha256="19r3y5as83nzk922hi4fkpp86gbqxdg1bgng798g1b073bp6m9yj"; depends=[Matrix quadprog]; }; - kirby21_base = derive2 { name="kirby21.base"; version="1.6.0"; sha256="1l9ynmkh27m6c3862j7xqiydanknd1zplqvsay5amh7k13isj9gg"; depends=[git2r]; }; - kirby21_fmri = derive2 { name="kirby21.fmri"; version="1.6.0"; sha256="15dhb7d2xrka55gg4f1n74dysj74c4fv9hpdx2n1vc79n90zl6yr"; depends=[kirby21_base]; }; - kirby21_t1 = derive2 { name="kirby21.t1"; version="1.6.0"; sha256="0zanqmndm15fld31g7zpam3y3z63aw1sgk74ya2l95cn21ln34a3"; depends=[kirby21_base]; }; + kirby21_base = derive2 { name="kirby21.base"; version="1.7.0"; sha256="0drm9h1f91yb75v9jzcaysj2cijcana949xvq8bgkqklmf9zwfl5"; depends=[git2r]; }; + kirby21_fmri = derive2 { name="kirby21.fmri"; version="1.7.0"; sha256="1z2l6bn53mwkll9ki4169lqlz6wcfp29xzdrqyw606j2xrs4wc22"; depends=[kirby21_base]; }; + kirby21_t1 = derive2 { name="kirby21.t1"; version="1.7.0"; sha256="0bv8rrk9jh02h3gill1g2w246j4zv98cjchz7i2c092lvqps8szs"; depends=[kirby21_base]; }; kissmig = derive2 { name="kissmig"; version="1.0-3"; sha256="1pi1x3gdbqrhr1km1hqj15k8wyrgs697fnxgjgxga1irbn8bi482"; depends=[raster]; }; - kitagawa = derive2 { name="kitagawa"; version="2.1-0"; sha256="1ddyd0rwwmdpbq823qass5dlp2lvi9d64wpl61ik6fghms2p9ryr"; depends=[kelvin]; }; + kitagawa = derive2 { name="kitagawa"; version="2.2-2"; sha256="0hl2l42jz4wkcx94cqycw8zb3ffg72fp2f310sh5icrcnyw43bmp"; depends=[kelvin]; }; kknn = derive2 { name="kknn"; version="1.3.1"; sha256="1nzkg3dxaiqp87p56wm895qx5xn86hv5hjr73qvl1yiaxiq0x112"; depends=[igraph Matrix]; }; klaR = derive2 { name="klaR"; version="0.6-14"; sha256="1g995df6286sd64nw7q9bihzkqhrasks45n8xk678y57kcadksai"; depends=[combinat MASS questionr]; }; klausuR = derive2 { name="klausuR"; version="0.12-10"; sha256="12fjs4dnwaki8sz718xgsg8qrqhsgf87cs0bylf0p3f5k8hrmk4b"; depends=[polycor psychometric xtable]; }; @@ -7835,7 +8178,7 @@ in with self; { km_ci = derive2 { name="km.ci"; version="0.5-2"; sha256="1l6kw8jppaa1802yc5pbfwwgac56nhwc9p076ivylhms4w7cdf8v"; depends=[survival]; }; kmconfband = derive2 { name="kmconfband"; version="0.1"; sha256="10n5w8k57faqcclwshs4m66i2i5b70i6f3xq5nqlgsi2ldkysbc9"; depends=[survival]; }; kmcudaR = derive2 { name="kmcudaR"; version="1.0.0"; sha256="1adixf4nsgnk8rgvcv37aznh8gxrfwn19ihh3c6siss51hlmhln2"; depends=[Rcpp RcppEigen]; }; - kmed = derive2 { name="kmed"; version="0.0.1"; sha256="0vcks4n0dpfd5cl5b8mhvhw6r2f3y12jn3d3j3dkj2grxmb9lh4c"; depends=[ggplot2]; }; + kmed = derive2 { name="kmed"; version="0.1.0"; sha256="1sqcrl75hjxpvaz1m40h7z3xzxkda8mnmq90jd6igvpbznixq2yc"; depends=[ggplot2]; }; kmer = derive2 { name="kmer"; version="1.1.0"; sha256="0c96rz75qggqfb0zccn0v92jx9ws2nlw8pk6j5jghllcgm99qbdc"; depends=[openssl phylogram Rcpp]; }; kmi = derive2 { name="kmi"; version="0.5.4"; sha256="07h4gn69r4zxm00alj74fd0qdyp7g9x38gpi1v7yzy806wlg93fr"; depends=[mitools survival]; }; kml = derive2 { name="kml"; version="2.4.1"; sha256="1my9gcripiqc6iphycjr3srj8qxy05yvd0648vblygrx2qym5hy2"; depends=[clv longitudinalData]; }; @@ -7852,51 +8195,53 @@ in with self; { knnIndep = derive2 { name="knnIndep"; version="2.0"; sha256="1fwkldgs2994svf3sj90pwsfx6r22cwwa22b30hdmd24l8v9kzn7"; depends=[]; }; knncat = derive2 { name="knncat"; version="1.2.2"; sha256="1d392910y3yy46j8my1a7m0xkij2rc6vwq5fg22qk00vqli8drz2"; depends=[]; }; knnp = derive2 { name="knnp"; version="1.0.0"; sha256="038bl834zjmwdhfh5skhsjk2jqizx285g1w4y7ji9h0h03akn5nd"; depends=[doParallel foreach forecast parallelDist]; }; - knockoff = derive2 { name="knockoff"; version="0.3.0"; sha256="0irqbidp00rh07xsfyyv5d3ksa4fn9vv49rsy8ah2gb9y41iy046"; depends=[corpcor glmnet gtools Matrix Rdsdp RSpectra]; }; - knor = derive2 { name="knor"; version="0.0-5"; sha256="19wjrcmfam1ck5vbidksmy923d5p5llikjxn0v248vzfz96ia1yc"; depends=[Rcpp]; }; + knockoff = derive2 { name="knockoff"; version="0.3.2"; sha256="1ky69f3hwwgy2il097mx0z7aakxsq692g9ink8z8cb4wnrp4bk07"; depends=[corpcor glmnet gtools Matrix Rdsdp RSpectra]; }; + knor = derive2 { name="knor"; version="0.0-6"; sha256="0mri7lw6jwkksyxidyqm2xrkjh1vd6dylxd24gd18j9blf342p7d"; depends=[Rcpp]; }; knotR = derive2 { name="knotR"; version="1.0-2"; sha256="0kd1b9wibpwyaanz9ny61qgfvcg4d3rzpy05sfshlpp0b1y8d3xj"; depends=[]; }; kntnr = derive2 { name="kntnr"; version="0.4.1"; sha256="0d78mgmz2yhfbf4m5jaa28aazaw2wf9vf1vxl53wrnpy0hxw329y"; depends=[base64enc dplyr httr jsonlite lazyeval lubridate purrr rstudioapi stringr tibble]; }; - koRpus = derive2 { name="koRpus"; version="0.10-2"; sha256="1ykaky10zkj76w44fhk6kb6dqz1pgncmdnz4r2amcm08a8h96gsr"; depends=[data_table]; }; + koRpus = derive2 { name="koRpus"; version="0.11-5"; sha256="053882fnz6c7yjiz72jg6sawd9q57h110nd4yjay65piadi9mci5"; depends=[data_table sylly]; }; koRpus_lang_en = derive2 { name="koRpus.lang.en"; version="0.1-2"; sha256="0v3cjzcpa24n479xi2lkj3yhjrgbd14iq9rz1bvywbj3shixs0bn"; depends=[koRpus sylly_en]; }; - kofdata = derive2 { name="kofdata"; version="0.1.3.1"; sha256="1sys4ymh0ja2zb14k6hq455563np7n8jzmgakkjdghfi38lxndam"; depends=[httr jsonlite xts zoo]; }; + kofdata = derive2 { name="kofdata"; version="0.1.3.2"; sha256="0s7y1djmiz598bx0ppabb5pc1cssaavr67yf4zk9aai90xs2p2v1"; depends=[httr jsonlite xts zoo]; }; kofnGA = derive2 { name="kofnGA"; version="1.2"; sha256="1j4gx6pkmasgbgcdlg6i5nzfrmim61c2hw34k5zfmwfbkrsgb575"; depends=[]; }; - kohonen = derive2 { name="kohonen"; version="3.0.5"; sha256="110ckinwzgv8b6g1cj0k0vva19abi44psf9vmqifs3450v90bq8z"; depends=[MASS Rcpp]; }; + kohonen = derive2 { name="kohonen"; version="3.0.6"; sha256="0b1039j69v43ppyczwpagriiv669gnxh3s40dhjq0mb3a6fxrpcb"; depends=[MASS Rcpp]; }; kokudosuuchi = derive2 { name="kokudosuuchi"; version="0.4.2"; sha256="1nwydfyr9waa5h8h8nrmwxy0jx7i4893g5khfv6b4g09z6g5cyly"; depends=[curl dplyr glue httr purrr rlang sf shiny stringr tibble xml2]; }; kolmim = derive2 { name="kolmim"; version="1.0"; sha256="0g1i0cazi4nhfwdd3ywqrar1sn7bw77w38qjii045w5vqg05srkp"; depends=[]; }; komadown = derive2 { name="komadown"; version="0.2.0"; sha256="0mw1bcrg10yy1y844lpik70979420h0nsar48v5p3qk783pymbdp"; depends=[bookdown rmarkdown]; }; - komaletter = derive2 { name="komaletter"; version="0.2.0"; sha256="17xkc22ci2gqypcfs1yhyzfmpsh8bmjbw6yms27cbqg4m4jdgm9v"; depends=[rmarkdown]; }; + komaletter = derive2 { name="komaletter"; version="0.3.0"; sha256="09yvb8ijm1s5d89mrl8j56n8x8q1lq2siprw8191ys3jidmk6ha7"; depends=[rmarkdown]; }; konfound = derive2 { name="konfound"; version="0.1.0"; sha256="1w85gsms061d5hik3bc7x5gc7cp6c9h8l8q8q60isj1r0n60a81s"; depends=[broom dplyr ggplot2 margins pbkrtest purrr rlang tidyr]; }; kpcalg = derive2 { name="kpcalg"; version="1.0.1"; sha256="1gd5bisyfwb12l9jmwhi2arlxrabc01vgv4m1qqs23vybsd6yh52"; depends=[energy graph kernlab mgcv pcalg RSpectra]; }; kpeaks = derive2 { name="kpeaks"; version="0.1.0"; sha256="1qxpncwyshv35h1190py6a69mljabfcjjs7v17a2rb5asahy3rk8"; depends=[]; }; kpmt = derive2 { name="kpmt"; version="0.1.0"; sha256="15d26khc0v3kc1c7l1avqp48pfqmc6xj32029mv7myivr41ashk3"; depends=[matrixStats]; }; kpodclustr = derive2 { name="kpodclustr"; version="1.0"; sha256="1fywgdj4q3kg8y9lwnj6vxg9cwgs5ccwj6m3knfgg92f8ghnsbsw"; depends=[clues]; }; kriens = derive2 { name="kriens"; version="0.1"; sha256="1qi65k9fsbbkbw0w40rv60p5ygrvr10rmlyxdaqa5bdpcmrbly5z"; depends=[]; }; + krige = derive2 { name="krige"; version="0.1-1"; sha256="0r52i29k5835r99vip1b0xxsqdg71m7zlbgq5002iav1ig6l7k71"; depends=[MASS mvtnorm]; }; kriging = derive2 { name="kriging"; version="1.1"; sha256="04bxr34grf2nlrwvgrlh84pz7yi0r8y7dc2wk0v5h5z6yf5a085w"; depends=[]; }; - krm = derive2 { name="krm"; version="2018.1-24"; sha256="0qysv61vjdz8674hn6mk0913dkm2bfkqmr7cybls9z9h4i068vdk"; depends=[kyotil]; }; - ks = derive2 { name="ks"; version="1.11.2"; sha256="0q99b6jv61cni5fgxvygbg8hs4fyhdmbgdzwgny7mrp1jr84izcx"; depends=[FNN kernlab KernSmooth Matrix mclust mgcv multicool mvtnorm]; }; + krm = derive2 { name="krm"; version="2018.8-17"; sha256="0d4isfzhlz9kxq0sbb1m60wnvcnlqzz8d45hiikgf1dfbngkyh2a"; depends=[kyotil]; }; + ks = derive2 { name="ks"; version="1.11.3"; sha256="0z749c3xzpf6n0g7xcfplrhap1di8k7kcfr7vigh95ywnigyhs8d"; depends=[FNN kernlab KernSmooth Matrix mclust mgcv multicool mvtnorm]; }; kscons = derive2 { name="kscons"; version="0.7.0"; sha256="1i4dp56y9swl5s6cipqlm5i5fknz2v0yz5g930cl5i8kx91rxwrp"; depends=[]; }; kselection = derive2 { name="kselection"; version="0.2.0"; sha256="1arg96r2pldvb89rfqnfpjxwksyac2mhmbimbkwzm7wrnbnrcn5d"; depends=[]; }; ksrlive = derive2 { name="ksrlive"; version="1.0"; sha256="1zd3ggzgjks0jay69s5m7ihbd7v7zha6ssj2m9ahnyp00ghpk83j"; depends=[tightClust]; }; - kst = derive2 { name="kst"; version="0.4-0"; sha256="1vqkriqhzdzs3kldjqgl15sm25lbfqzisglk2r96rjgxbj8k59w7"; depends=[proxy relations sets]; }; - kstIO = derive2 { name="kstIO"; version="0.1-0"; sha256="04s8lyg7622zcq947qlx5brwf1an7icg94i5di8vwjp7d8zgczq6"; depends=[MASS pks sets stringr]; }; + kst = derive2 { name="kst"; version="0.5-0"; sha256="05vq23j9q4q1nh9s92z303pwma0mh0b7h64aha3xvilfs3sbhvwq"; depends=[proxy relations sets]; }; + kstIO = derive2 { name="kstIO"; version="0.2-0"; sha256="01p6krb945m5jy57k479szic4yb7bap020mz1imlnsnmbnrycpx6"; depends=[MASS pks sets stringr]; }; + kstMatrix = derive2 { name="kstMatrix"; version="0.1-0"; sha256="0c8nb6cc4ng6gc21bhnj8in7rcjnsbncb3c8k70q3w340apwv2pm"; depends=[]; }; ktsolve = derive2 { name="ktsolve"; version="1.1"; sha256="0b5myr093v3qaj9gzbw1w728i5ij418whxxpicj51w657dcy647k"; depends=[]; }; ktspair = derive2 { name="ktspair"; version="1.0"; sha256="1v63982jidxlcf2syahcb29myv34kc790l7lwyfxx9l50ssb812n"; depends=[Biobase]; }; kulife = derive2 { name="kulife"; version="0.1-14"; sha256="070ayy6fr9nsncjjljikn2i5sp2cx3xjjqyc64y2992yx74jgvvd"; depends=[]; }; kutils = derive2 { name="kutils"; version="1.45"; sha256="0qx40d5nk8q0kv09l73bcn7dbch89b9zi8yp75v39vcy4qxdnc2b"; depends=[foreign lavaan openxlsx plyr RUnit xtable]; }; kvh = derive2 { name="kvh"; version="1.3"; sha256="0dhdvka7sdh7qcq5cz5xsv8dbxr1lr4n7wf033smsz4nvwgjixr3"; depends=[Rcpp]; }; kwb_hantush = derive2 { name="kwb.hantush"; version="0.2.1"; sha256="0rjnhhzvjhhl0r2ixz9vkgnqkrnnk772253zy7xkpadj7ws69jsf"; depends=[hydroGOF lattice]; }; - kyotil = derive2 { name="kyotil"; version="2017.12-27"; sha256="0xd64xg3nj0pj0ziycq4ndpl8kwxfng96ag8zmqzzxk85zw2vyq3"; depends=[]; }; - kza = derive2 { name="kza"; version="4.0.0"; sha256="0yfn6ijbskdkcgbgk4fwhgiiy34cw9k9vy1psi779mqd9kyjf56j"; depends=[]; }; + kyotil = derive2 { name="kyotil"; version="2018.10-17"; sha256="12rrr7ynjwhcskjkfkv11q5xpdfn9j27vmnsd0r0vc2w2b25217k"; depends=[]; }; + kza = derive2 { name="kza"; version="4.1.0"; sha256="128r4xmqxy1i1svcmv8786qqmriyqygd8d49cp53x8gb56k011xa"; depends=[]; }; kzfs = derive2 { name="kzfs"; version="1.5.0.1"; sha256="0gd945x1ppdw15iqcn5ijzmh07hs7zg8rjb85231bcqbh98djvfm"; depends=[digest kzft]; }; kzft = derive2 { name="kzft"; version="0.17"; sha256="1y6almhs1x21cr4bbf5fj3mnhp65ivzs869660cyg70sva853sv7"; depends=[polynom]; }; kzs = derive2 { name="kzs"; version="1.4"; sha256="1srffwfg0ps8zx0c6hs2rc2y2p01qjl5g1ypqsbhq88vkcppx1w9"; depends=[lattice]; }; l0ara = derive2 { name="l0ara"; version="0.1.5"; sha256="15qajzpvqnikg9k199cqvwp9qbrxx4zr9lsvyad96pa9qr156gvb"; depends=[Rcpp RcppArmadillo]; }; l1kdeconv = derive2 { name="l1kdeconv"; version="1.2.0"; sha256="1mk92sz9nsmxsn7yplhfcz07k022lrr61114ckrmm0x8hfd89zj8"; depends=[ggplot2 mixtools]; }; l2boost = derive2 { name="l2boost"; version="1.0.1"; sha256="0f2gapzpvjnr8n1jgn60jpmcas4s8nk2q8q4k5v4ypwvpfqp7kk1"; depends=[MASS]; }; - laGP = derive2 { name="laGP"; version="1.5-1"; sha256="0sqzvz78p50afp892p7ghy4fmy9p3a2ik51bzzwrx6r96ax7w971"; depends=[tgp]; }; + laGP = derive2 { name="laGP"; version="1.5-2"; sha256="1gpvp07m3ixhsvvcx0px9wx2f603zbsj4cqrx8w1azwrms5y2qj4"; depends=[tgp]; }; labdsv = derive2 { name="labdsv"; version="1.8-0"; sha256="0rbf7cswnj534jdi5hfaai12nbxj6l96f02c73ynraqvdqxb1bnz"; depends=[cluster MASS mgcv]; }; label_switching = derive2 { name="label.switching"; version="1.7"; sha256="1p4cgqf79zppvzrhh5gcxnm7f8qj03fzfmjx43mjhsr1vqig4c78"; depends=[combinat lpSolve]; }; - labelVector = derive2 { name="labelVector"; version="0.0.1"; sha256="0iwk8p3m2g6732q2pilwr3wlaiys15khd54r0vxsp2irlw77lzrg"; depends=[]; }; + labelVector = derive2 { name="labelVector"; version="0.1.0"; sha256="08ydgmvks09hbln10zmqxv9hxgiha0n9w5cgych9bnkqdca74gah"; depends=[]; }; labeledLoop = derive2 { name="labeledLoop"; version="0.1"; sha256="0gq392h0sab8k7k8bzx6m7z5xpdsflldhwbpdf92zbmkbzxsz00m"; depends=[]; }; labeling = derive2 { name="labeling"; version="0.3"; sha256="13sk7zrrrzry6ky1bp8mmnzcl9jhvkig8j4id9nny7z993mnk00d"; depends=[]; }; labelled = derive2 { name="labelled"; version="1.1.0"; sha256="0w1zc4w2lkhyldwqyc0drfdn251kjz94jv9p0sn6b034vcifq7ia"; depends=[dplyr haven]; }; @@ -7906,23 +8251,25 @@ in with self; { lacm = derive2 { name="lacm"; version="0.0.3"; sha256="0qhvffiw2bcpnv6l4y4h12ss59yc2j0hwsg2nr4a7w4nh6yk9fwc"; depends=[numDeriv statmod]; }; laeken = derive2 { name="laeken"; version="0.4.6"; sha256="1rhkv1kk508pwln1d325iq4fink2ncssps0ypxi52j9d7wk78la6"; depends=[boot MASS]; }; laercio = derive2 { name="laercio"; version="1.0-1"; sha256="0la6fxv5k9zq4pyn8dxjiayx3vs9ksm9c6qg4mnyr9vs12z53imm"; depends=[]; }; - lagged = derive2 { name="lagged"; version="0.1-1"; sha256="062a9hrnp2bsahsdasml0wzqpapyslfiwy9q2mvwqsl6j2pqkk0s"; depends=[]; }; + lagged = derive2 { name="lagged"; version="0.2-0"; sha256="053wv4z1859v4j00x6l707v6w5zdyk3r1a6naxs601607yn27n5h"; depends=[]; }; lagsarlmtree = derive2 { name="lagsarlmtree"; version="1.0-0"; sha256="0nrrr2n2q228d1c7qrhcnczmr374i56p7kr868yl19g8ddd3gx3w"; depends=[Formula partykit spdep]; }; lakemorpho = derive2 { name="lakemorpho"; version="1.1.1"; sha256="0asrp9rvyi5ykxw922qx25rgxvyc9mh4sc7qkbpwzqw8xvgpad2z"; depends=[cluster geosphere raster rgdal rgeos sp]; }; laketemps = derive2 { name="laketemps"; version="0.5.1"; sha256="04742r379bzgbfr4243wwkb26cvfmnw50jzgygq7vblq00grzska"; depends=[dplyr reshape2]; }; lamW = derive2 { name="lamW"; version="1.3.0"; sha256="00qa1sxyqb2r7f9yidg43cq2v1285f45xpm3z928jpi424mpg0fc"; depends=[Rcpp RcppParallel]; }; lambda_r = derive2 { name="lambda.r"; version="1.2.3"; sha256="0cc6pszs6yccn0hgjpyn9gspv9aiva9d91ba0640i5m0l5xy7n0c"; depends=[formatR]; }; lambda_tools = derive2 { name="lambda.tools"; version="1.0.9"; sha256="1wslxxh6rxny3n06y16dqwpczi3k42vrq4pbwwshl6kzhl56r45b"; depends=[lambda_r]; }; + lamme = derive2 { name="lamme"; version="0.0.1"; sha256="1x9jl79iqikpjixajly1k8w2nkzskns2m0v242giknl0ikw298h1"; depends=[]; }; landest = derive2 { name="landest"; version="1.0"; sha256="1lp5sfqk0n7i23fmwjgzsabml1fsji1h9xq5khxzaz1bzqv1s08g"; depends=[survival]; }; landpred = derive2 { name="landpred"; version="1.0"; sha256="1bl17xkx18i8i7arccnjmxvhjn4yiy7w64hg4n0xmhk8pg0l3mrg"; depends=[survival]; }; landsat = derive2 { name="landsat"; version="1.0.8"; sha256="07zvj1yyryxk7rwgcrf1kl32p2karkkqz6xrnwy1096dg9iw2js7"; depends=[lmodel2 mgcv rgdal sp]; }; landsat8 = derive2 { name="landsat8"; version="0.1-10"; sha256="169b5ka98ka9chbmksz6syaygc9wgl8i2gz1h2xkxj3lk9jcg01r"; depends=[rgdal sp]; }; landscapeR = derive2 { name="landscapeR"; version="1.2"; sha256="1zm5mj861ycbc2m28yjqnkifx8grc4l718mf8r422m78jfakvcjy"; depends=[raster Rcpp]; }; - landscapetools = derive2 { name="landscapetools"; version="0.3.0"; sha256="0ssrqcac3x8fca0vx63nzzac38kx8vlbffkzahmag24c6b1y6dzq"; depends=[checkmate dplyr extrafont ggplot2 magrittr purrr raster rasterVis tibble tidyr viridis]; }; + landscapemetrics = derive2 { name="landscapemetrics"; version="0.2"; sha256="1blriglh2kplcndcrgyxw6llhffxy2lbra8brpji6ma7552nb4xl"; depends=[dplyr ggplot2 raster Rcpp RcppArmadillo sp tibble]; }; + landscapetools = derive2 { name="landscapetools"; version="0.4.0"; sha256="191fgb0in2vz8drfm59g5cddka1yxi4l37zpiprj9ay1hdg8rc0s"; depends=[checkmate dplyr extrafont ggplot2 magrittr purrr raster rasterVis tibble tidyr viridis]; }; landsepi = derive2 { name="landsepi"; version="0.0.4"; sha256="0b162vdgrd1v93bm5dc5r4nzpcm3cq5iy8v3f2axpx1fk378aaar"; depends=[fields maptools MASS Matrix Rcpp rgdal rgeos sf sp splancs]; }; languageR = derive2 { name="languageR"; version="1.4.1"; sha256="0grkhdjz9dcrgq6qwv7wpwmckn3mfv022c5wrx29b1dxafd0qzm0"; depends=[]; }; languagelayeR = derive2 { name="languagelayeR"; version="1.2.3"; sha256="1sh3k8xw88pm93wmpy1qi44i8pv5b5g6ajzas36bdi1bqm8cqzax"; depends=[attempt curl httr rjson]; }; - languageserver = derive2 { name="languageserver"; version="0.2.3"; sha256="1rjdmnfgf6nj03ddsak56y6gii8kj2vayri2l26hg1n0ap99z1bs"; depends=[callr jsonlite lintr R6 repr stringr styler]; }; + languageserver = derive2 { name="languageserver"; version="0.2.5"; sha256="07j0s5s689szasvh4h5hn2250yfly35gjv88g7ggzy71i9vw0cdv"; depends=[callr collections desc jsonlite lintr R6 repr stringr styler]; }; lans2r = derive2 { name="lans2r"; version="1.0.5"; sha256="1m3hz85gl9m4vafdy7mj3z560d11mdwlwvnzy8n7d1cjqryn7a2b"; depends=[dplyr ggplot2 lazyeval R_matlab reshape2 tidyr]; }; lar = derive2 { name="lar"; version="0.1-2"; sha256="0qda0y4ag10kg83wxs3z754kc8c1dg2rwciy64klk7an4ln43i5b"; depends=[data_table treemap xlsx]; }; largeList = derive2 { name="largeList"; version="0.3.1"; sha256="0csijzlxajj0rh24w5n7fs6ss301zr6zfv5khyq4a9g437bwhc2i"; depends=[]; }; @@ -7932,31 +8279,32 @@ in with self; { lassoscore = derive2 { name="lassoscore"; version="0.6"; sha256="1i3i07da8sw9w47rcflhylz8zxvzkyycbc1a4gf6hbcpp21rqd7d"; depends=[glasso glmnet Matrix]; }; lassoshooting = derive2 { name="lassoshooting"; version="0.1.5-1"; sha256="0ixjw8akplcfbzwyry9p4bhbcm128yghz2bjf9yr8np6qrn5ym22"; depends=[]; }; latdiag = derive2 { name="latdiag"; version="0.2-4"; sha256="051chvky3hlfr4hwm9qickl6aaxwnxa88zksmzczqfspby771hq6"; depends=[]; }; - latentnet = derive2 { name="latentnet"; version="2.8.0"; sha256="05r7hzj5i7rgpxl798lwi2m62l1qkl5zdza0q2awcd5ydkgj34hp"; depends=[abind coda ergm MASS mvtnorm network sna statnet_common]; }; - later = derive2 { name="later"; version="0.7.3"; sha256="04j2phymxgkk4hv9pfa5w3s98w5d7fvm11blrdhxmray4n618msw"; depends=[BH Rcpp rlang]; }; + latentnet = derive2 { name="latentnet"; version="2.9.0"; sha256="0gmv4h6zijhgypkasr1y45lx7ksfhfpdgrqqxan4qnxfqp3kxbrr"; depends=[abind coda ergm MASS mvtnorm network sna statnet_common]; }; + later = derive2 { name="later"; version="0.7.5"; sha256="0xhwn37makzm85zb6w5acc7svzibxcnz69rks0kxw22vapkxwz1i"; depends=[BH Rcpp rlang]; }; latex2exp = derive2 { name="latex2exp"; version="0.4.0"; sha256="12nbcgfmv13k6sc6m326ras9bcvy380b7rxcxphn06r3cfkby0zw"; depends=[magrittr stringr]; }; - latexpdf = derive2 { name="latexpdf"; version="0.1.3"; sha256="1zsdz3nvhifxbhp69nigq1crgm39g6gmc8xl5akp5jdidmzyrh84"; depends=[]; }; + latexpdf = derive2 { name="latexpdf"; version="0.1.6"; sha256="07g33z5lyxinlrzpk6pd41m4c4bbfql611yqcqxasf8wra9bb0jr"; depends=[]; }; lattice = derive2 { name="lattice"; version="0.20-35"; sha256="0pcnmaz3lr62ly0dcy5hnnqxshc4yqd43hrvlz3almgc9l7sna88"; depends=[]; }; - latticeDensity = derive2 { name="latticeDensity"; version="1.0.7"; sha256="1y33p8hfmpzn8zl4a6zxg1q3zx912nhqlilca6kl5q156zi0sv3d"; depends=[spam spatstat spdep splancs]; }; + latticeDensity = derive2 { name="latticeDensity"; version="1.1.0"; sha256="0amxkdf240pgqaydkfvmv1mgsl17jv57938sl96clw1bzd4ilnld"; depends=[sp spam spatstat spdep splancs]; }; latticeExtra = derive2 { name="latticeExtra"; version="0.6-28"; sha256="1hkyqsa7klk5glj9y1hg3rxr5qilqw8h0017zc4c3nps7lr9a1kq"; depends=[lattice RColorBrewer]; }; - lava = derive2 { name="lava"; version="1.6.2"; sha256="1r47pps39cgvxhg1s0bqknf4jl91pbb0c76q5icxivhwb172fqcm"; depends=[numDeriv SQUAREM survival]; }; + lava = derive2 { name="lava"; version="1.6.3"; sha256="0cayjspry3r2lcbvl77v5v52b2zarri3b8xsf87pw5a3jn9anxcf"; depends=[numDeriv SQUAREM survival]; }; lava_tobit = derive2 { name="lava.tobit"; version="0.5"; sha256="15dlcjgnvrpdxymcwf4rvk72ssr650dy1ayp50zlrp2va0p6h4kw"; depends=[lava mets mvtnorm survival]; }; - lavaSearch2 = derive2 { name="lavaSearch2"; version="1.3.3"; sha256="08h9nfbjbq6l5drmq07js2b6ylv29wfrddqdlpsnysi99sj8i8aq"; depends=[ggplot2 lava MASS Matrix multcomp mvtnorm nlme reshape2 sandwich]; }; - lavaan = derive2 { name="lavaan"; version="0.6-1"; sha256="0k0mm66i5xfb06rc7b6is16nn7k2limas5mhlr9d5nwbqz87g4i2"; depends=[MASS mnormt numDeriv pbivnorm]; }; + lavaSearch2 = derive2 { name="lavaSearch2"; version="1.4"; sha256="0mr3vranmsrd9acr16gryib89dn2x19wwwd4wx3dgwwby18mc5j3"; depends=[doParallel ggplot2 lava MASS Matrix multcomp mvtnorm nlme reshape2 sandwich]; }; + lavaan = derive2 { name="lavaan"; version="0.6-3"; sha256="0hw856kv11zqn6nd4216rh19i6xbnc1rh044r7jvvxkhzgbqkyxz"; depends=[MASS mnormt numDeriv pbivnorm]; }; lavaan_shiny = derive2 { name="lavaan.shiny"; version="1.2"; sha256="0qgswdpxb5af0l3v70sg0jrgsdwr88gz6zzwbk3pw5x6qnvnwb6r"; depends=[lavaan psych semPlot shiny shinyAce]; }; lavaan_survey = derive2 { name="lavaan.survey"; version="1.1.3.1"; sha256="133hpy8s00y6jzwwzl9brdh70w26jycdm3n1c6bcryghwh3ai4xr"; depends=[lavaan MASS survey]; }; lavaanPlot = derive2 { name="lavaanPlot"; version="0.5.1"; sha256="01bx1snd3zhc8dmq0f407qhw2d00f6d38qpr791qc1mq5kr3d8qj"; depends=[DiagrammeR lavaan stringr]; }; lawn = derive2 { name="lawn"; version="0.4.2"; sha256="17nj88n5xzhjkwm0hi8g9h5a3nclvkq3k1pv3690ph14g4l9lgcj"; depends=[jsonlite magrittr V8]; }; lawstat = derive2 { name="lawstat"; version="3.2"; sha256="03ppzyx3x6vx1n2k5l8gl9j2q2mnqa1im5smxnrlncan7yzjy7sf"; depends=[Kendall mvtnorm VGAM]; }; - lazy = derive2 { name="lazy"; version="1.2-15"; sha256="1pdqgvn0qpfg5hcg5159ccf5qj2nd1ibai9p85rwjpddfynk6jks"; depends=[]; }; + lazy = derive2 { name="lazy"; version="1.2-16"; sha256="1psh3sng1pm23pjwy7iszb21ys7d29ry34ymvpgxj6zdhywwi5n7"; depends=[]; }; lazyData = derive2 { name="lazyData"; version="1.1.0"; sha256="0mbmmx6dh8ph4lrx1b4gxbwz3jwxv4nqi0xvfzpzrm3bwbsjc634"; depends=[]; }; lazyWeave = derive2 { name="lazyWeave"; version="3.0.2"; sha256="1a7l0rgkp3xq2s6bikciq778fwyr282baa6jk9ip4a71s931p2ag"; depends=[Hmisc labelVector]; }; lazyeval = derive2 { name="lazyeval"; version="0.2.1"; sha256="0q9zx78ncy2ffzrf9sh053069kd3w1xn1ss3gsbyf3y4jhza9cw3"; depends=[]; }; - lazyrmd = derive2 { name="lazyrmd"; version="0.2.0"; sha256="0ahm1wspvm625lx7y2zz05bvv66rlswphs84vpkcqb0dqfcn3s48"; depends=[digest htmltools htmlwidgets knitr rmarkdown]; }; + lazyrmd = derive2 { name="lazyrmd"; version="0.2.0.1"; sha256="0yzamy1bfq0d7mnrr24wzvvw6lq7rhfs6qnqypfmym65j5kfj0f8"; depends=[digest htmltools htmlwidgets knitr rmarkdown]; }; lazysql = derive2 { name="lazysql"; version="0.1.3"; sha256="18vff80rl8ckjwfqi9dhzs1q35a1wrxvynidji6dy2kvvk38xnpa"; depends=[checkmate magrittr plyr]; }; lba = derive2 { name="lba"; version="2.4.4"; sha256="0izqndm992zv3sg8v5lpnxbdbxhpxl6hq3bf6xgq3pnw8vl3f6nb"; depends=[alabama MASS plotrix rgl scatterplot3d]; }; lbfgs = derive2 { name="lbfgs"; version="1.2.1"; sha256="0p99g4f3f63vhsw0s1m0y241is9lfqma86p26pvja1szlapz3jf5"; depends=[Rcpp]; }; lbfgsb3 = derive2 { name="lbfgsb3"; version="2015-2.13"; sha256="1jpy0j52w8kc8qnwcavjp3smvdwm1qgmswa9jyljpf72ln237vqw"; depends=[numDeriv]; }; + lbfgsb3c = derive2 { name="lbfgsb3c"; version="2018-2.13"; sha256="01pdzh1wfj5xpxl08c13rrf2iyf616s2fav7pznlgha7bpkdc2j4"; depends=[numDeriv Rcpp RcppArmadillo]; }; lbiassurv = derive2 { name="lbiassurv"; version="1.1"; sha256="1i6l3y4rasqpqka7j39qjx22wjbilgc9pkp05an52aysfvfxy193"; depends=[actuar]; }; lbreg = derive2 { name="lbreg"; version="1.2"; sha256="0wcw5w07fgmxwzmamf380l8vxw9fnxhbrhcwwfy6x87xby3bzr1b"; depends=[MASS]; }; lcda = derive2 { name="lcda"; version="0.3"; sha256="1ximsyn6qw2gfn7b1hdpbjs6h6nk7hrignlii0np1lbf0k8l4xxl"; depends=[poLCA]; }; @@ -7970,44 +8318,48 @@ in with self; { ldat = derive2 { name="ldat"; version="0.2.0"; sha256="04l544js7xzaywd2mj3kcz40gxn98primzmzd1ihk35lqmpd7h8y"; depends=[BH lvec Rcpp]; }; ldatuning = derive2 { name="ldatuning"; version="0.2.0"; sha256="18nm4hj7733c1cp03hyddnivhiiyv7ndnw9m6j3af019jjmvf215"; depends=[ggplot2 reshape2 Rmpfr scales slam topicmodels]; }; ldbod = derive2 { name="ldbod"; version="0.1.2"; sha256="1ylzkswnhf4jnjx2ijasy49pj78ffx333za0bx2fnf3g85kicqiv"; depends=[mnormt RANN]; }; - ldbounds = derive2 { name="ldbounds"; version="1.1-1"; sha256="15ixrq615x64zmi6dryq3ww0dqxd0qf5xx1bs3w934sf99l46bhs"; depends=[lattice]; }; + ldbounds = derive2 { name="ldbounds"; version="1.1-1.1"; sha256="10rmkidvvhwnrkc62c5ld44xhbvx1k8mch28h1yryakn8gznp3p8"; depends=[lattice]; }; ldhmm = derive2 { name="ldhmm"; version="0.4.5"; sha256="1pax1hl0h07nc9d34pf0jqgpcxr7y7dpqcm2hlclrmsinhj9q8vi"; depends=[ecd ggplot2 moments optimx scales xts zoo]; }; ldr = derive2 { name="ldr"; version="1.3.3"; sha256="1c48qm388zlya186qmsbxxdcg1mdv3nc3i96lqb40yhcx2yshbip"; depends=[GrassmannOptim Matrix]; }; leabRa = derive2 { name="leabRa"; version="0.1.0"; sha256="08yiwyfg9bp4i9w5yyw9p63wyvgj39kd64y3h21j2jmpw8zxncdq"; depends=[plyr R6]; }; leaderCluster = derive2 { name="leaderCluster"; version="1.2"; sha256="1lqhckarqffm2l3ynji53a4hrfn0x7zab7znddia76r2h6nr02zb"; depends=[]; }; leafSTAR = derive2 { name="leafSTAR"; version="1.0"; sha256="16zfaj0v6dx6mhy6m126lxa6w0dzfw4acm83jlbrizaz52amhv6a"; depends=[]; }; - leaflet = derive2 { name="leaflet"; version="2.0.1"; sha256="01ngvwj2w0hlxz24x32ffwkcd5rrbm1w57mp7mlaapi3yfnxaxlq"; depends=[base64enc crosstalk htmltools htmlwidgets magrittr markdown png raster RColorBrewer scales sp viridis]; }; + leaflet = derive2 { name="leaflet"; version="2.0.2"; sha256="051i5qmwa0zbk4jpjrx9kzk4g8qg9c3cavvhw19yj08fjhh8si7s"; depends=[base64enc crosstalk htmltools htmlwidgets magrittr markdown png raster RColorBrewer scales sp viridis]; }; leaflet_esri = derive2 { name="leaflet.esri"; version="1.0.0"; sha256="01bwzxh2rdhpvvazaxsji8axl765q1ix1fdxla6i61nvqkpw3dz1"; depends=[htmltools leaflet leaflet_extras]; }; leaflet_extras = derive2 { name="leaflet.extras"; version="1.0.0"; sha256="0li7651cwlz7sg04xdrmvhkrf0n6amaydck7gqz0wkb6wq8hcyzw"; depends=[htmltools htmlwidgets leaflet magrittr stringr]; }; leaflet_minicharts = derive2 { name="leaflet.minicharts"; version="0.5.4"; sha256="17lrchpry3in36jdkinsxs9lzqnx65xyk9g939knc8nmjw6z2j2r"; depends=[htmltools leaflet]; }; leafletCN = derive2 { name="leafletCN"; version="0.2.1"; sha256="1rg39n4bjacwss9nbdnz8y2zh8hxlc7a5ygndhjbmzajnbxfh09b"; depends=[htmltools jsonlite leaflet magrittr rgeos sp]; }; leafletR = derive2 { name="leafletR"; version="0.4-0"; sha256="0j1i971dl3smq8rcsa5s4rfmmk936k2q6xa4hppfzwhrxs3xkkkx"; depends=[brew jsonlite]; }; + leanpubr = derive2 { name="leanpubr"; version="0.3.1"; sha256="0c8pmzn25cwv0wccf30zrrqrs5amlk8iqyyva9vp9976wzwgbxrx"; depends=[httr jsonlite xml2]; }; leapp = derive2 { name="leapp"; version="1.2"; sha256="1yiqzmhgl5f3zwpcc5sz3yqrvp8p6r4w2ffdfyirirayqc96ar17"; depends=[corpcor MASS sva]; }; leaps = derive2 { name="leaps"; version="3.0"; sha256="11gjmn1azrjw5xlvdb4gknj9985kck9x8zb9np1rnk2smp6pka2m"; depends=[]; }; learNN = derive2 { name="learNN"; version="0.2.0"; sha256="0q0j25vi7hrwaf38y10m24czf3rsvj937jvkz3ns12bd8srlflah"; depends=[]; }; + learnPopGen = derive2 { name="learnPopGen"; version="0.9.8"; sha256="1f1wf7g3r68vd0d89cbqb3ik61h67sy40j86628yb7r0x0xk85dn"; depends=[gtools phytools]; }; learningCurve = derive2 { name="learningCurve"; version="1.1.2"; sha256="02dl5rlvwa8dvhknf4kdfg3aial54shnxrq7k2k8yj2dj0qh062c"; depends=[ggplot2 gridExtra scales tibble]; }; learningr = derive2 { name="learningr"; version="0.29"; sha256="1nr4ydcq2mskv4c0pmf0kxv5wm8pvjqmv19xz5yaq0j834b0n5q7"; depends=[plyr]; }; learnr = derive2 { name="learnr"; version="0.9.2.1"; sha256="0jbk0g6fkw7zs8ykzhsvh9vvz8xmc4v03bqzjsa5mmpxpqan5vx5"; depends=[evaluate htmltools htmlwidgets jsonlite knitr markdown rappdirs rmarkdown rprojroot shiny withr]; }; learnrbook = derive2 { name="learnrbook"; version="0.0.2"; sha256="1k17dk8ahn1ifwid1hhx0k7fpgc62zg82y66bbf6nhd4dgdbbv2p"; depends=[]; }; learnstats = derive2 { name="learnstats"; version="0.1.1"; sha256="1sa064cr7ykl4s1ssdfmb3v1sjrnkbwdh04hmwwd9b3x0llsi9vv"; depends=[ggplot2 Rcmdr shiny]; }; + ledger = derive2 { name="ledger"; version="1.0.1"; sha256="0f97wxzkhssf0z5kslsx530b4a27fdiiakiylqbfam7xzlqz34yj"; depends=[dplyr rio rlang tidyr]; }; leerSIECyL = derive2 { name="leerSIECyL"; version="1.0.2"; sha256="1zx28gpnys9mmhq7wwljfnq92wj1h1vxgqiirnfmn36z942nvmxl"; depends=[RCurl]; }; lefse = derive2 { name="lefse"; version="0.1"; sha256="1zdmjxr5xa5p3miw79mhsswsh289hgzfmn3mpj1lyzal1qgw1h5m"; depends=[ape fBasics geiger picante SDMTools vegan]; }; leiv = derive2 { name="leiv"; version="2.0-7"; sha256="15ay50886xx9k298npyksfpva8pck7fhqa40h9n3d7fzvqm5h1jp"; depends=[]; }; lemon = derive2 { name="lemon"; version="0.4.1"; sha256="16zr2xg72vxplrvsrrz2fp0akqs4am1k2ymk4mdn2yzzby41dn40"; depends=[ggplot2 gridExtra gtable knitr lattice plyr]; }; - lero_lero = derive2 { name="lero.lero"; version="0.1"; sha256="1jndsgy48fn085ilkh8dfc3w76kfnfj0x70d1m3h59zxi3x9lb82"; depends=[stringr]; }; - lessR = derive2 { name="lessR"; version="3.7.5"; sha256="1irsi3i6kih7mdkwvd42dknhgz16v7mdrdvfqsrqa85cshpl7aad"; depends=[colorspace ellipse foreign lattice latticeExtra leaps openxlsx png robustbase sas7bdat triangle]; }; + lero_lero = derive2 { name="lero.lero"; version="0.2"; sha256="03ll7jzcay0swwpmxyf0y9k2h8mxx4p5v3ggm9dgdz4j99934l70"; depends=[]; }; + lessR = derive2 { name="lessR"; version="3.7.6"; sha256="04gwdfbj5ix6zpwazl2f83x7jhdyrhhkz4s0dz1609c10m8zjpm1"; depends=[colorspace ellipse foreign lattice latticeExtra leaps openxlsx png robustbase sas7bdat triangle]; }; + lest = derive2 { name="lest"; version="1.0.0"; sha256="06ng0dpj37bhhwc34ilpks2ics97m9yjdpj4q993h3s2fn8kdgxw"; depends=[]; }; lestat = derive2 { name="lestat"; version="1.9"; sha256="1skxymdf3ncmdbskh7711xxgwsmwxfxnl52gcgw06jscx6s6wrsd"; depends=[MASS]; }; letsR = derive2 { name="letsR"; version="3.1"; sha256="0wyqqq7w21k87md3pwsz3kdaws345fdhh2xgavwiiywalg0gvxxx"; depends=[fields geosphere maps maptools raster rgdal rgeos sp XML]; }; lettercase = derive2 { name="lettercase"; version="0.13.1"; sha256="0s2s42v6a3mlz6084sk5wcbap3czgbd53f9p64pxwd1yfj18lbyx"; depends=[stringr]; }; lexRankr = derive2 { name="lexRankr"; version="0.5.0"; sha256="1l0p4qg6lcpp1f2n6mh1glvxzy3bis0c1ra8x9z5v26x31wmwq68"; depends=[igraph Rcpp SnowballC]; }; - lexicon = derive2 { name="lexicon"; version="1.0.0"; sha256="0wgf5gvmvybdsijnm4hqkigzr25p3i50y3mxp98cngrm1nqdiq7m"; depends=[data_table syuzhet]; }; + lexicon = derive2 { name="lexicon"; version="1.1.3"; sha256="085s7k1ywzmsadwmsp1gc2yspv8hp3pp3cjvpq1s39cnwpgi0h0w"; depends=[data_table syuzhet]; }; lexiconPT = derive2 { name="lexiconPT"; version="0.1.0"; sha256="0w53gnr29nzc1ib54rnxdycs0c5f7vpv586qmvxxzy4ar16kisaq"; depends=[]; }; lfactors = derive2 { name="lfactors"; version="1.0.4"; sha256="1r8qlwj3zsm233jfx9ag0q5g1knvjmbwl3785pwcd12zi6f68dcc"; depends=[]; }; lfda = derive2 { name="lfda"; version="1.1.2"; sha256="0y59iigcpmyrmsiwrpv5agja6vz3wxmxd9sl5hbf1ybm4d0lyky4"; depends=[plyr rARPACK]; }; - lfe = derive2 { name="lfe"; version="2.8"; sha256="138lnrag64hwjgcsyp9y56kq4gby5c9dqfcsl88b7j02hfly7kfv"; depends=[Formula Matrix sandwich xtable]; }; - lfl = derive2 { name="lfl"; version="1.4.1"; sha256="0r9459mmnx1khpw24w943y1x4xl3zcws2cvv61216yzb0xbqwhc0"; depends=[e1071 foreach forecast plyr Rcpp tseries zoo]; }; + lfe = derive2 { name="lfe"; version="2.8-2"; sha256="1j06mnp3jii427dqbdy5hqw6f254nr5is91y24vacmxwk2m44pzd"; depends=[Formula Matrix sandwich xtable]; }; + lfl = derive2 { name="lfl"; version="1.4.2"; sha256="0lr7r04jpsrp54g4flpwihymvwa3idxhzfjxfbx4ah16rd47nk5x"; depends=[e1071 foreach forecast plyr Rcpp tseries zoo]; }; lfstat = derive2 { name="lfstat"; version="0.9.4"; sha256="0lm9fyw45kdkkjldkmagykn9p3l3jlw2ky3h00f7j6rqkizjm6r0"; depends=[dygraphs lattice latticeExtra lmom lmomRFA plyr xts zoo]; }; - lg = derive2 { name="lg"; version="0.1.0"; sha256="0gaid5aihc9dk3igbm8jhsspl1k4k3prqvn7j2vsm92jc7m00iyw"; depends=[ggplot2 ks localgauss logspline mvtnorm]; }; + lg = derive2 { name="lg"; version="0.2.0"; sha256="0127dprv1zdr9m3m84lak4998d0mjfv9809ylzhr7r8a6zy1qdv8"; depends=[ggplot2 ks localgauss logspline mvtnorm]; }; lga = derive2 { name="lga"; version="1.1-1"; sha256="1nkvar9lmdvsc3c21xmrnpn0haqk03jwvc9zfxvk5nwi4m9457lg"; depends=[boot lattice]; }; lgarch = derive2 { name="lgarch"; version="0.6-2"; sha256="05xksc4d6dbf5ls4lf2gpk9xyi99fikr7dva88b84rfgads1yhrh"; depends=[zoo]; }; lgcp = derive2 { name="lgcp"; version="1.5"; sha256="1n1f87qg0y9r22p3q1qjnfrs7xarvsidgqgg6v2bsb55viwy11g3"; depends=[fields iterators maptools Matrix ncdf4 RandomFields raster rgeos rpanel sp spatstat spatstat_utils]; }; @@ -8016,15 +8368,16 @@ in with self; { lhs = derive2 { name="lhs"; version="0.16"; sha256="09clh386i5iig8x36lx02p01zqq0kb9hzvw5slv1ggmjnp1rklcw"; depends=[]; }; libamtrack = derive2 { name="libamtrack"; version="0.6.3"; sha256="0pdwrz19q1yls0rgr4579f31j86awizx3j31h7vdh6y70ngpmb82"; depends=[]; }; libcoin = derive2 { name="libcoin"; version="1.0-1"; sha256="1i38v0pq5snx9clhgfiymk6lq87h41pajhp2dvin30snnq0py6qq"; depends=[mvtnorm]; }; + librarian = derive2 { name="librarian"; version="1.3.0"; sha256="1nlk5v7lk56w4gq97lv1d4k1wza8zankvrzcl0996zqlgz6imz0d"; depends=[devtools]; }; librarysnapshot = derive2 { name="librarysnapshot"; version="0.1.2"; sha256="0v4x564zpm58kxs5n84bi6mcjhbzjg6a2lc30vsc8kbm3qy0nq38"; depends=[]; }; libsoc = derive2 { name="libsoc"; version="0.6.4"; sha256="1hdnqgnvzm5116gphxa55k2bc3ksr607px2s2yg1ilmmxdghdccw"; depends=[]; }; - libstableR = derive2 { name="libstableR"; version="1.0"; sha256="0qk70rl76lz2izgp2c1asx0yvi8xgfq1yg579kcygxk4pnxjdwv4"; depends=[Rcpp]; }; - lidR = derive2 { name="lidR"; version="1.5.1"; sha256="0r6y07ciajn13rhb8n57xnj1lzvz3hvjb4hm29hxclny93c45l16"; depends=[data_table future gdalUtils geometry gstat lazyeval mapedit mapview memoise RANN raster Rcpp rgeos rgl rlas settings sp]; }; - lifecontingencies = derive2 { name="lifecontingencies"; version="1.3.2"; sha256="012pfiz4l8xrwrjlzwfc0vxw1wpw2n2f2vj39mlpmg5aswg4mm8k"; depends=[markovchain Rcpp]; }; + libstableR = derive2 { name="libstableR"; version="1.0.2"; sha256="1gkcgbc8a7ks9x8mqmlz98hk55q3qy62izam7csz1s0r5dzsyqcr"; depends=[Rcpp RcppGSL]; }; + lidR = derive2 { name="lidR"; version="1.6.1"; sha256="0x5ns3p1qvakk999x42qlrhy71plvcqxp65fbj9kc07npyj6bfgw"; depends=[assertive concaveman data_table future gdalUtils geometry glue gstat lazyeval mapedit mapview memoise RANN raster Rcpp rgeos rgl rlas settings sp]; }; + lifecontingencies = derive2 { name="lifecontingencies"; version="1.3.5"; sha256="18dlp6bm9hsr99y85fxdbapn8s1daqsynpiqf2cfhyffqiwll97f"; depends=[markovchain Rcpp]; }; lifecourse = derive2 { name="lifecourse"; version="2.0"; sha256="1m8ihqvzhzpq2m2pdvh37bpq9pdbj23r3y0jkl3q8farh3qj473d"; depends=[TraMineR]; }; lifelogr = derive2 { name="lifelogr"; version="0.1.0"; sha256="1wygvw61ygpww0kahxhmjdncwg4zc2cshs0brzw18nfqaj8vpfav"; depends=[dplyr fitbitScraper ggplot2 lazyeval lubridate modelr plyr R6 shiny stringr tibble tidyr]; }; lift = derive2 { name="lift"; version="0.0.2"; sha256="0ynsyl6lw7z7bvwzk2idgxzzqji5ffnnc3bll9h4gwdw666g7fln"; depends=[]; }; - liftLRD = derive2 { name="liftLRD"; version="1.0-7"; sha256="18gcp5b5jmx37ri4b3nnqvsd0crk5wp53dh5p50arflzw0pn7qn1"; depends=[adlift nlt]; }; + liftLRD = derive2 { name="liftLRD"; version="1.0-8"; sha256="1m24f4mc70l808cpkcdm91hzb5b3bkzibvgyfi9zs6cs8apcvmy3"; depends=[adlift nlt]; }; liftr = derive2 { name="liftr"; version="0.9"; sha256="1yg9ql6rklrdcd2qds223naryg3rbdi1mbqrlf5jc3cwzhllcsa9"; depends=[knitr rmarkdown rstudioapi stringr yaml]; }; liger = derive2 { name="liger"; version="0.1"; sha256="0q26qdy7kgqj70ka2gcpji8ni2w8kxnznhp4ig2251xllw9j7dz4"; depends=[matrixStats Rcpp RcppArmadillo]; }; lightsout = derive2 { name="lightsout"; version="0.3"; sha256="0ypniqf9wk35dd9j57wd7gxchr5hy25fwhmkndz2z8b9ajhm3c9b"; depends=[magrittr shiny shinyjs]; }; @@ -8033,6 +8386,7 @@ in with self; { likelihoodAsy = derive2 { name="likelihoodAsy"; version="0.50"; sha256="009alsxsv9fjpihp3zl0a94y6cvr49nh21skba64lzz9fypm9j8l"; depends=[alabama cond digest nleqslv pracma Rsolnp]; }; likelihoodExplore = derive2 { name="likelihoodExplore"; version="0.1.0"; sha256="13cnql7pbx8qq1j3cfb3lkzzf2k55shpfa0jd00z30ys6imxzcfn"; depends=[lazyeval plyr]; }; likert = derive2 { name="likert"; version="1.3.5"; sha256="0c4irxs7pp1z8nj4s8cq23daw4h94n3h7x4f6q1d85614qcl9l3p"; depends=[ggplot2 gridExtra plyr psych reshape2 xtable]; }; + lilikoi = derive2 { name="lilikoi"; version="0.1.0"; sha256="1v7xrkv8xxmq6cdww4z1p9vlvy71cqgd3yb5mal4v9w2wrfaps6z"; depends=[caret corrplot devtools dplyr e1071 gbm ggplot2 glmnet hash Hmisc infotheo Matrix pamr princurve pROC R_oo randomForest reshape2 RWeka stringr]; }; limSolve = derive2 { name="limSolve"; version="1.5.5.3"; sha256="1ll6ir42h3g2fzf0wqai213bm82gpwjj2hfma2np3mz024sc09rg"; depends=[lpSolve MASS quadprog]; }; lime = derive2 { name="lime"; version="0.4.0"; sha256="0hml1f3fq21s45h1cg3qi4w7vdfdxcsz8q4h1429gbppbdanz9i1"; depends=[assertthat ggplot2 glmnet gower htmlwidgets magick Matrix Rcpp RcppEigen shiny shinythemes stringdist stringi]; }; limitplot = derive2 { name="limitplot"; version="1.2"; sha256="0wj1xalm80fa5pvjwh2zf5hpvxa3r1hnkh2z9z285wkbrcl0qfl2"; depends=[]; }; @@ -8043,16 +8397,20 @@ in with self; { linear_tools = derive2 { name="linear.tools"; version="1.3.0"; sha256="14lp3gifzbid82lkr7rdqajz2abp8m7y8irpwx6s8w66djjfckda"; depends=[ggplot2 magrittr plyr pryr scales stringr]; }; linearQ = derive2 { name="linearQ"; version="1.0"; sha256="0c6ccllv4zf8zgs3957zjvnkdwbv2ryrs0f5lzk1clc233vm7acm"; depends=[Rcpp stepR]; }; linemap = derive2 { name="linemap"; version="0.1.0"; sha256="0qkbmpfr742xbs3xn5ppx6q0prwrr9mk1c1mv050cm47dm7jcs6l"; depends=[sf]; }; + lineqGPR = derive2 { name="lineqGPR"; version="0.0.3"; sha256="0adrjsfqwy9wrw4hf48p7jgn985bbpv6jyhhkab19fabc84iy1jg"; depends=[broom ggplot2 MASS Matrix mvtnorm nloptr quadprog restrictedMVN tmg TruncatedNormal]; }; lineup = derive2 { name="lineup"; version="0.37-10"; sha256="1w45ll6phynn03ala0wadmp06rrgg8rcqnhz7hqy4w6q7khbkk6r"; depends=[class qtl]; }; lingtypology = derive2 { name="lingtypology"; version="1.0.13"; sha256="1v6n2wdz5zkkc1k88jpjrh6nwias496dg2vvglrjd7g4bymb7715"; depends=[leaflet leaflet_minicharts magrittr MASS rgeos rowr sp stringdist]; }; - link2GI = derive2 { name="link2GI"; version="0.3-0"; sha256="0jzk1p9cygcw0xz9hqfzx74acl4ymn3jmcjj0dxrmknsvfdzcl2d"; depends=[gdalUtils raster rgdal rgrass7 RSAGA sf sp]; }; + linguisticsdown = derive2 { name="linguisticsdown"; version="1.0.1"; sha256="1y0iwbdkm37h6777p409ac7w8xqp70g2jjcfhxpvnrvvk4v0hrrk"; depends=[dplyr DT knitr magrittr miniUI rstudioapi shiny stringr tidyr]; }; + link2GI = derive2 { name="link2GI"; version="0.3-5"; sha256="1mxbahxn5kfkvqdyg5mr4gqpbw90ik1xmxvl6a7d4dcacpsqzkl8"; depends=[devtools gdalUtils raster rgdal rgrass7 roxygen2 RSAGA sf sp]; }; linkR = derive2 { name="linkR"; version="1.1.1"; sha256="1748r7s5g0gvsmghrb7l5lmdbzb9f4vkbgj51v308jr64r1k7l93"; depends=[svgViewR]; }; linkcomm = derive2 { name="linkcomm"; version="1.0-11"; sha256="1w5sfmzvrk30fr161pk0cy5nj8kasqm6hqgyafq6r280b5s272cb"; depends=[dynamicTreeCut igraph RColorBrewer]; }; linkim = derive2 { name="linkim"; version="0.1"; sha256="0yvyid9x59ias8h436a202hd2kmqvn8k1zcrgja2l4z2pzcvfn91"; depends=[]; }; + linkprediction = derive2 { name="linkprediction"; version="1.0-0"; sha256="0p2abdq6ad689236w2d0khlycpjgy6j7xrlb96ngl6csgxwm07bl"; depends=[igraph intergraph]; }; + linkspotter = derive2 { name="linkspotter"; version="1.2.0"; sha256="0wk27jn8jr5rskjxbixshmp2dl0l74hrc8r6x3rvhy0x0b00zks2"; depends=[dplyr energy ggplot2 Hmisc infotheo mclust minerva pbapply rAmCharts shiny tidyr visNetwork]; }; linl = derive2 { name="linl"; version="0.0.2"; sha256="1n3sljyycsppk11ri9jijsif3g7v4n8xvk1n4hhx0qg65kh7wmry"; depends=[knitr rmarkdown]; }; linpk = derive2 { name="linpk"; version="1.0"; sha256="14l3vv507z7x63ziynp07902599syah0icvzq4rxfjf48bf96l63"; depends=[mvtnorm]; }; linprog = derive2 { name="linprog"; version="0.9-2"; sha256="1ki14an0pmhs2mnmfjjvdzd76pshiyvi659zf7hqvqwj0viv4dw9"; depends=[lpSolve]; }; - lintools = derive2 { name="lintools"; version="0.1.1.4"; sha256="18rqpm0cg233hclcqskdh3mfpwpbawc582j800mjalii233jzr36"; depends=[]; }; + lintools = derive2 { name="lintools"; version="0.1.2"; sha256="18layj6a202p0sy9rs022fp0a6fwvixwwmwlyzn7h9kh4y9gvxjz"; depends=[]; }; lintr = derive2 { name="lintr"; version="1.0.2"; sha256="14l6fi2mdc2swi4xw865q63yngk2b5k553qbyvnhmwq2w4pv07pn"; depends=[codetools crayon digest httr igraph jsonlite knitr rex rstudioapi stringdist testthat]; }; liqueueR = derive2 { name="liqueueR"; version="0.0.1"; sha256="0rpjib0dz39la63gy9bw9gmdfq2fcx40y4y4wcb6ky41qcjdp1nd"; depends=[itertools]; }; liquidSVM = derive2 { name="liquidSVM"; version="1.2.1"; sha256="0nw8n4qg2jijbnlza15ifzqsl4pj7gjzi4nd71zp7h0aw5mnp80x"; depends=[]; }; @@ -8065,24 +8423,24 @@ in with self; { listdtr = derive2 { name="listdtr"; version="1.0"; sha256="08drps03nndpdxswyv8bjm1bcckjav5pjj7fdx3dzyn0v4dfy619"; depends=[ggplot2]; }; listenv = derive2 { name="listenv"; version="0.7.0"; sha256="0ma5jsri2zqkrlsm9nqpikl7imbwfy1glsmk13mblw0q245h49k1"; depends=[]; }; listless = derive2 { name="listless"; version="0.0-2"; sha256="1gr6l4vih7j28kg2mj1xj2yhlpwjc4p894vsxri25vq0r9kgcdym"; depends=[magrittr tidyr]; }; - listviewer = derive2 { name="listviewer"; version="2.0.0"; sha256="0fq9jdb9yahm095m5ja9j7hlv3ggigj14nlf1pdk26xj2685j8n9"; depends=[htmltools htmlwidgets shiny]; }; + listviewer = derive2 { name="listviewer"; version="2.1.0"; sha256="09jkrrq4zyzgi66vkpm5n7isxpbckx5hjk39nik766hzarj5i7rs"; depends=[htmltools htmlwidgets shiny]; }; liteq = derive2 { name="liteq"; version="1.0.1"; sha256="080ljgb2qsfmyppnlp9acmskgq94pmdbbgbhygqkxvzda5bbas8h"; depends=[assertthat DBI rappdirs RSQLite]; }; - littler = derive2 { name="littler"; version="0.3.3"; sha256="1cbsnm4ffzld93b9q8g6g6h6yskjfwa8j1xani5682ipb7r290x7"; depends=[]; }; + littler = derive2 { name="littler"; version="0.3.5"; sha256="0zv6yr23swiw7w21qdw26jrw882wh0si7wz73fwl8d554rbhqinw"; depends=[]; }; liureg = derive2 { name="liureg"; version="1.1.2"; sha256="1zhc5fs47whjvvwwiivykxfchzbjbldyvdmqh9rp7ccwba2q3956"; depends=[]; }; - live = derive2 { name="live"; version="1.5.7"; sha256="018k2l3klhkxsb6b8xvrvxajgahb6zd02cngkkayfz2477iy8kdl"; depends=[breakDown data_table dplyr forestmodel ggplot2 lubridate MASS mlr shiny]; }; + live = derive2 { name="live"; version="1.5.8"; sha256="0idnavgmvhq2w6fa46ssaxhj5v8p3x1q8zcgmknp47s9c2h8yfrc"; depends=[breakDown data_table dplyr forestmodel ggplot2 gower lubridate MASS mlr shiny]; }; livechatR = derive2 { name="livechatR"; version="0.1.0"; sha256="1k0z6q3s9iw962m1lwlx45p95flzl5jg1xh6ng426v9jh1yyrbb2"; depends=[data_table dplyr jsonlite magrittr purrr]; }; ljr = derive2 { name="ljr"; version="1.4-0"; sha256="0jby94ml8w6pwnxbmv6qfjww2myvvnn9vrmlqpdh71dhgp3z35py"; depends=[]; }; - llama = derive2 { name="llama"; version="0.9.1"; sha256="1cvm58kivjw77a2fy1jwsajzl1d0i3i123p6glpwdlqn6rlharck"; depends=[BBmisc checkmate ggplot2 mlr parallelMap plyr rJava]; }; + llama = derive2 { name="llama"; version="0.9.2"; sha256="0knlmfddp70ddhjb9slyibbb9qj7pfybqccv3i4f545qxmmykj2n"; depends=[BBmisc checkmate ggplot2 mlr parallelMap plyr rJava]; }; lle = derive2 { name="lle"; version="1.1"; sha256="09wq7mzw48czp5k0b4ij399cflc1jz876fqv0mfvlrydc9igmjhk"; depends=[MASS scatterplot3d snowfall]; }; lllcrc = derive2 { name="lllcrc"; version="1.2"; sha256="06n1fcd3g3z5rl2cyx8jhyscq9fb52mmh0cxg81cnbmai3sliccb"; depends=[combinat data_table plyr VGAM]; }; llogistic = derive2 { name="llogistic"; version="1.0.0"; sha256="1mddwcfp6c5g36japybjrlirz0q8l7am8akbiv8c6z7jka2nwi00"; depends=[]; }; lm_beta = derive2 { name="lm.beta"; version="1.5-1"; sha256="0p224y9pm72brbcq8y1agkcwc82j7clsnszqzl1qsc0gw0bx9id3"; depends=[]; }; lm_br = derive2 { name="lm.br"; version="2.9.3"; sha256="1xadz0rygm58igk0ig0w45132gnsvjxvwqzca4m6v6i6lz9x55pf"; depends=[Rcpp]; }; lmPerm = derive2 { name="lmPerm"; version="2.1.0"; sha256="1ss2hcfxqvfq4n6hypv7jp0n0apby9payxzaswaysr5368lkidn3"; depends=[]; }; - lmQCM = derive2 { name="lmQCM"; version="0.1.1"; sha256="1rznr5ky9ngfl8afqh22r4bxkzjyibrwr62f30dcdvpyh863hj0h"; depends=[Biobase genefilter nnet]; }; + lmQCM = derive2 { name="lmQCM"; version="0.1.2"; sha256="0flir861pnvg6kkkccv7f162gd9ml4mks7pjs0041jrs7bijbh68"; depends=[Biobase genefilter nnet]; }; lmSubsets = derive2 { name="lmSubsets"; version="0.3"; sha256="1d78gbmxybxb98lapy5m7nyxc7slyxlj50xdh6a4nyckixmf9plp"; depends=[]; }; lmSupport = derive2 { name="lmSupport"; version="2.9.13"; sha256="0ln5c91mbxkymgnv2nw5m3nrm5bwckpikgb9x1qhmjc55m98wkb8"; depends=[AICcmodavg car gplots gvlma lme4 pbkrtest psych pwr]; }; - lme4 = derive2 { name="lme4"; version="1.1-17"; sha256="0czwdy1s8h3slaw73pz0h8qmqczf5135fz6i46i2dv1ql2pbq49x"; depends=[lattice MASS Matrix minqa nlme nloptr Rcpp RcppEigen]; }; + lme4 = derive2 { name="lme4"; version="1.1-18-1"; sha256="01ar4fak8zj7c1vmh9m576wchxj5qzpfqn637s7fh3fl6cpz0alq"; depends=[lattice MASS Matrix minqa nlme nloptr Rcpp RcppEigen]; }; lmeNB = derive2 { name="lmeNB"; version="1.3"; sha256="03khn9wgjbz34sx0p5b9wd3mhbknw8qyvyd5pvllmjipnir63d3q"; depends=[lmeNBBayes numDeriv statmod]; }; lmeNBBayes = derive2 { name="lmeNBBayes"; version="1.3.1"; sha256="13shfsh9x6151xy8gicb25sind90imrwclnmfj96b76p5dvhzabm"; depends=[]; }; lmeSplines = derive2 { name="lmeSplines"; version="1.1-10"; sha256="0fy6hspk7rqqkzv0czvvs8r4ishvs7zsf4ykvia65nj26w7yhyia"; depends=[nlme]; }; @@ -8104,11 +8462,12 @@ in with self; { lmom = derive2 { name="lmom"; version="2.6"; sha256="0wxlclzypg6dnvk09k26pdgn3nijl06xsa9rny5l03xzar01mz5s"; depends=[]; }; lmomPi = derive2 { name="lmomPi"; version="0.5.0"; sha256="07ggfzgvhc6kkqs8bbs6z01rbhgb0ki2y4li6r0nkiby1wcpx0py"; depends=[lmom stringr]; }; lmomRFA = derive2 { name="lmomRFA"; version="3.1"; sha256="1gq5sjdywz1jbsshrh350zad7iifml2yj8an5xa63ghxiskrxscx"; depends=[lmom]; }; - lmomco = derive2 { name="lmomco"; version="2.3.1"; sha256="0nyl18kipsab4ka5ywbmw28kkr6i09w4lc9pa96m1fh765zghjxi"; depends=[goftest Lmoments MASS]; }; - lmridge = derive2 { name="lmridge"; version="1.1"; sha256="1r4g7482iz4b7jk0gj169bj96ip2wyrff1ndkwhf0qzg6r6vqa8d"; depends=[]; }; + lmomco = derive2 { name="lmomco"; version="2.3.2"; sha256="1gqwn5yjd3zcwd5nysayf88vjhj2j1qxfgqcw63q7f2ih0xk1lqp"; depends=[goftest Lmoments MASS]; }; + lmridge = derive2 { name="lmridge"; version="1.2"; sha256="091rznzh77bmsv7sw9xmsq6s9pnljyq7qyl74kgcxss718134jr3"; depends=[]; }; lmtest = derive2 { name="lmtest"; version="0.9-36"; sha256="0sym9sm1vl6bbgq01jhz1plxqmgh8hrgrn7rw0mwvsalcn6id7xy"; depends=[zoo]; }; lmvar = derive2 { name="lmvar"; version="1.5.0"; sha256="068ib0abpvds0ibb0d6m71svv7d3l0is4kdin1wzsn633kk3zcfy"; depends=[Matrix matrixcalc maxLik]; }; - loa = derive2 { name="loa"; version="0.2.43.3"; sha256="0krrv5sicm4xvgilri8nwby6jlidx375b4sk273hxq7bhayw4hqq"; depends=[lattice MASS mgcv plyr png RColorBrewer RgoogleMaps]; }; + loa = derive2 { name="loa"; version="0.2.44.2"; sha256="16yrkl8l4wa4i3iizncm58l75l46acfr2lf4vn53crcci9xra333"; depends=[lattice MASS mgcv plyr png RColorBrewer RgoogleMaps]; }; + localIV = derive2 { name="localIV"; version="0.1.0"; sha256="0q2vjiwj301g0lqaafpk6i1cxdwgaanz9ckwj2zkzk4h3gx2afw3"; depends=[KernSmooth mgcv sampleSelection]; }; localgauss = derive2 { name="localgauss"; version="0.40"; sha256="0y0pcg2i7lr4wipxawn06hy0q11znhcn2ah6rqwnlyy8pab70pyq"; depends=[foreach MASS matrixStats]; }; localsolver = derive2 { name="localsolver"; version="2.3"; sha256="1d18rihzqf1f5j9agfp8jysll7lqk1ai23hkdqkn6wwxj442llv4"; depends=[]; }; locfdr = derive2 { name="locfdr"; version="1.1-8"; sha256="1falkbp2xz07am8jlhwlvyqvxnli4nwl188kd0g58vdfjcjy3mj2"; depends=[]; }; @@ -8119,9 +8478,10 @@ in with self; { loder = derive2 { name="loder"; version="0.2.0"; sha256="0m6g8c25dmq0wgpy8y6cbggymxdvqwb6lp2yzs5bgpq183512spb"; depends=[]; }; loe = derive2 { name="loe"; version="1.1"; sha256="1n16pgfxg9vcn729xxjbbvavg2ywbdcch9v2ph8nv3z7psc0q46c"; depends=[MASS]; }; log4r = derive2 { name="log4r"; version="0.2"; sha256="07q8m7z2sxm6n25a62invf76qakxdsijfh3272spc8xrmdmyw6rj"; depends=[]; }; - logKDE = derive2 { name="logKDE"; version="0.1.0"; sha256="1jp36v8dfdli85lzcya4nvw17fjrsfldm8v487k1s1d1s9qz55vl"; depends=[pracma Rcpp]; }; + logKDE = derive2 { name="logKDE"; version="0.3.2"; sha256="09gachibj0klqa9ijw572lwphbh9qj6zqray5byq1dh7zsiq516q"; depends=[pracma Rcpp]; }; + logNormReg = derive2 { name="logNormReg"; version="0.2-0"; sha256="1mry2vqb9sqv17xw26k637w3i3zqjgayz2ql43rbz2f5248lm0yc"; depends=[]; }; logOfGamma = derive2 { name="logOfGamma"; version="0.0.1"; sha256="0r7di0l646ycfmdjk8hli6b0v7qj0i8z3i8i7rwd3fsblb2q22vd"; depends=[]; }; - logbin = derive2 { name="logbin"; version="2.0.3"; sha256="0jvld5lh69288g80ypvqyg0s0nip9hgd8p09b91xp11vnlap0g02"; depends=[glm2 turboEM]; }; + logbin = derive2 { name="logbin"; version="2.0.4"; sha256="01gwfq9r2yy28iymxa402r8jp8km953cb5i60xnskcpzh8bv4rmf"; depends=[glm2 turboEM]; }; logconcens = derive2 { name="logconcens"; version="0.16-4"; sha256="11bk03kjlb747g54axmb0nayz226g41xvanbw79aij76vjbglv7y"; depends=[]; }; logcondens = derive2 { name="logcondens"; version="2.1.5"; sha256="1sq27klnphp74hq0l0460m9bb7lrl06mpgkg4qq8iciy3yy1mrkj"; depends=[ks]; }; logcondens_mode = derive2 { name="logcondens.mode"; version="1.0.1"; sha256="1i2c2prk5j863p3a3q3xnsv684igfi5czz3dib7zfjldpf0qyaq7"; depends=[distr logcondens]; }; @@ -8131,16 +8491,19 @@ in with self; { loggle = derive2 { name="loggle"; version="1.0"; sha256="0r1r8m2ckva17vbvwkzhq1lx6bap0kbfj9hxyk46adslcf3xxrxp"; depends=[doParallel foreach glasso igraph Matrix sm]; }; logiBin = derive2 { name="logiBin"; version="0.3"; sha256="06y5bqm3j6xdr1cd607v2sqkghnd2bv6bvxc6cz8dvp8jabqa0zm"; depends=[data_table doParallel foreach iterators partykit]; }; logihist = derive2 { name="logihist"; version="1.0"; sha256="1q3322rh3g31c5i80aw54pln0m1jgxmbx30cn31nlh3ijkvnpq9a"; depends=[ggplot2]; }; - logistf = derive2 { name="logistf"; version="1.22"; sha256="0npwqbl8rfvn6w2y0qpkckj44mvjjccj0cn9axp2wcs03cmz0rp8"; depends=[mgcv mice]; }; + logistf = derive2 { name="logistf"; version="1.23"; sha256="0f1qn7q3h0qg2qdiz69ab03qvl4xhizqg304vjak72390nj25nss"; depends=[mgcv mice]; }; logistic4p = derive2 { name="logistic4p"; version="1.5"; sha256="0h0dxyklqc95ykyril1a3d2bdnszj5l9dqbxzh2wbfmk06prvh8b"; depends=[MASS]; }; logisticPCA = derive2 { name="logisticPCA"; version="0.2"; sha256="07ikyn127ld0fjdw7x911wrswqwqpw4lbcz0iffvh6jfjkgyk341"; depends=[ggplot2]; }; + logisticRR = derive2 { name="logisticRR"; version="0.1.0"; sha256="1bk3dj3pn0rprcypwwal96xfszx3nfzfypyr8l7lp4h3v5mqbrxw"; depends=[]; }; logitchoice = derive2 { name="logitchoice"; version="0.9.4"; sha256="1vkw7cwp7nwrsj9ifn4gz21zbw9da5rph9lr3w466zxkzdkbldqj"; depends=[]; }; - logitnorm = derive2 { name="logitnorm"; version="0.8.36"; sha256="0iag05fhzrizi74bjkl909ky7zxi9yzqx6im2ki86bpczijyfxb8"; depends=[]; }; + logitnorm = derive2 { name="logitnorm"; version="0.8.37"; sha256="1a9plxsxy29j9xpvwsznbbj150h9daay5zfzlmkh5y0f7f15w3a9"; depends=[]; }; loglognorm = derive2 { name="loglognorm"; version="1.0.1"; sha256="0rhx769a5nmidpbpngs2vglsbkpgw9badz3kj3jfmpj873jfnbln"; depends=[]; }; - logmult = derive2 { name="logmult"; version="0.6.5"; sha256="0ak13nfgaima6g75rxbghl7xmagfp4qshj09x1fxh2r2rcags7dk"; depends=[gnm qvcalc]; }; + logmult = derive2 { name="logmult"; version="0.7.0"; sha256="05asjafpairgvix8gs9n5bwiwxv857wzbmni67clm2dzkh7vsn22"; depends=[gnm qvcalc]; }; + lognorm = derive2 { name="lognorm"; version="0.1.3"; sha256="02f3z7m11lnwndlahw03936l95lrhjil3ygrhi40qk5ihnq27d9z"; depends=[Matrix]; }; logspline = derive2 { name="logspline"; version="2.1.11"; sha256="0747xl0p6kigc936kyqxqgmwxsh01lb9913w7wq0q05766pnw7kq"; depends=[]; }; lokern = derive2 { name="lokern"; version="1.1-8"; sha256="1dlyvgd2i4dckd8ic3x75r4sikwalch9b2f13xp5rhkzmfzbprxq"; depends=[sfsmisc]; }; lolR = derive2 { name="lolR"; version="2.0"; sha256="0ygxm5qym1s64pa8a04jf44y786svrkhscda2x781jx8gpil753v"; depends=[abind ggplot2 irlba MASS pls]; }; + lolog = derive2 { name="lolog"; version="1.1"; sha256="03bhmzd7qw6hq82lymy183x4q2lzm5f9ish2fy7dqif1iqvkq3fq"; depends=[BH ggplot2 intergraph Matrix network Rcpp reshape2]; }; lomb = derive2 { name="lomb"; version="1.0"; sha256="06lbk7s1ilqx6xsgj628wzdwmnvbs0p03hdpx8665fhddcxh3ryy"; depends=[]; }; longCatEDA = derive2 { name="longCatEDA"; version="0.31"; sha256="0dji41lsknfwmgb2fczzm37dm97wvi45rh878w7pwlzwdh9vq8va"; depends=[]; }; longROC = derive2 { name="longROC"; version="1.0"; sha256="1fs11vqi4hy99d7shzzdvd6ic5gay6rh2027w6j0qpd04n8q88m8"; depends=[survival]; }; @@ -8148,17 +8511,19 @@ in with self; { longclust = derive2 { name="longclust"; version="1.2.2"; sha256="1yxxz8apbl1vaqzrsiq7r5ss87j2li595bkvibpkwslgwzv47dcs"; depends=[]; }; longitudinal = derive2 { name="longitudinal"; version="1.1.12"; sha256="1d83ws28nxi3kw5lgd5n5y7865djq7ky72fw3ddi1fkkhg1r9y6l"; depends=[corpcor]; }; longitudinalData = derive2 { name="longitudinalData"; version="2.4.1"; sha256="0lnvcfgj721bawl1ciz0jw83mfsnzkhg6jn824vr3qdm4rbib2vd"; depends=[class clv misc3d rgl]; }; - longmemo = derive2 { name="longmemo"; version="1.0-0"; sha256="1jnck5nfwxywj74awl4s9i9jn431655mmi85g0nfbg4y71aprzdc"; depends=[]; }; - longpower = derive2 { name="longpower"; version="1.0-16"; sha256="0hbv43y0fgbv1qiczy4kibqc7pk7whrz4kyxshg8730y8g9wyxdi"; depends=[lme4 nlme]; }; + longmemo = derive2 { name="longmemo"; version="1.1-1"; sha256="0myn2xpg0mw3x5zma0y1dza2jg3x9zj9z8xv2z8l2q9pm228xn0d"; depends=[]; }; + longpower = derive2 { name="longpower"; version="1.0-16.1"; sha256="0ywzx9rsh53mqlzxm0dzmwpxdyj187pxhjwd7cf463l4vm49qgmy"; depends=[lme4 nlme]; }; longurl = derive2 { name="longurl"; version="0.3.0"; sha256="0ysa70zlkk3ybddj3yd3vbhjnkjbrisiz5a2hgbjx10p33m1r3am"; depends=[dplyr httr purrr]; }; loo = derive2 { name="loo"; version="2.0.0"; sha256="1k2qhma7gm4l3h9wf5gh1gm09map2jqcdzz3pba4gf039n8h3gsl"; depends=[matrixStats]; }; lookupTable = derive2 { name="lookupTable"; version="0.1"; sha256="0ipy0glrad2gfr75kd8p3999xnfw4pgpbg6p064qa8ljqg0n1s49"; depends=[data_table dplyr]; }; - loon = derive2 { name="loon"; version="1.1.1"; sha256="023vrnbn4pikiq6l57phwy9zy1lp6vxrkinrffaxwicvaj58c931"; depends=[]; }; + loon = derive2 { name="loon"; version="1.2.0"; sha256="1ch5hzpyvq0vil8fwpkpjh8yxyq876shy9kyr6svs2x7jc132qvr"; depends=[gridExtra]; }; loop = derive2 { name="loop"; version="1.1"; sha256="1gr257fm92rfh1sdhsb4hy0fzwjkwvwm3v85302gzn02f86qr5dm"; depends=[MASS]; }; loopr = derive2 { name="loopr"; version="1.0.1"; sha256="1qzfjv15ymk8mnvb556g2bfk64jpl0qcvh4bm3wihplr1whrwq6y"; depends=[dplyr lazyeval magrittr plyr R6]; }; + loose_rock = derive2 { name="loose.rock"; version="1.0.9"; sha256="03713ac7farwgjidnx46j6mzm6if10b33lrpzban9lis713s8qqm"; depends=[biomaRt digest dplyr futile_options ggfortify ggplot2 MASS reshape2 rlang]; }; lordif = derive2 { name="lordif"; version="0.3-3"; sha256="1yby9fvzdi1dzvzp6d6h144k1p9nfacd8l5bd66dmhnc8sp2nlx5"; depends=[mirt rms]; }; lorec = derive2 { name="lorec"; version="0.6.1"; sha256="0mgypd8awixh1lzbh5559br4k7vi3pfmwniqhgh68wc06sc6bn65"; depends=[]; }; - lori = derive2 { name="lori"; version="0.1.0"; sha256="1sqwfai0h776i3g0gxqfagisayv428gzw9540d90nzbrg9vkj28j"; depends=[ade4 FactoMineR glmnet lars lattice logmult NLRoot pdist psych svd]; }; + lorentz = derive2 { name="lorentz"; version="1.0-0"; sha256="0irnmzsvp4jdych2j68y68yvly1w3c0fxkply7lqhw2h1hbxhlgx"; depends=[emulator magrittr]; }; + lori = derive2 { name="lori"; version="0.2.1"; sha256="0440hnb05lmvww9w7nf568j2azh4bk28z2r2fjba1mx3c2wk8h63"; depends=[ade4 FactoMineR glmnet gridExtra lars lattice NLRoot pdist psych svd]; }; lowmemtkmeans = derive2 { name="lowmemtkmeans"; version="0.1.2"; sha256="08zhdw48rzw47yzhg4s37bkliyngxs46cyb57dvng1s3m0w0dhvi"; depends=[Rcpp RcppArmadillo]; }; lpSolve = derive2 { name="lpSolve"; version="5.6.13"; sha256="13a9ry8xf5j1f2j6imqrxdgxqz3nqp9sj9b4ivyx9sid459irm6m"; depends=[]; }; lpSolveAPI = derive2 { name="lpSolveAPI"; version="5.5.2.0-17"; sha256="1gfxnjkhhyybhyg29qdrdqzwq569b6pgwjgacmw3q7aldc724cyz"; depends=[]; }; @@ -8166,12 +8531,11 @@ in with self; { lpc = derive2 { name="lpc"; version="1.0.2"; sha256="1r6ynkhqjic1m7fqrqsp7f8rpxqih5idn4j96fqrdj8nj01znv29"; depends=[]; }; lpdensity = derive2 { name="lpdensity"; version="0.2.2"; sha256="1fv1biyc12zg0wfqcr5kp761fy6n6879knvlxr2zjp6rjssi3h6d"; depends=[ggplot2]; }; lpint = derive2 { name="lpint"; version="2.0"; sha256="0p1np8wlfbax0c7ysc5fs9dai8s00h1v0gan89dbd6bx06307w2r"; depends=[]; }; - lpirfs = derive2 { name="lpirfs"; version="0.1.0"; sha256="0xkm6ds44v3g0vnh6nribysg1fbphgx81zklx82xmi5cvl5z69c1"; depends=[doParallel dplyr foreach ggplot2 mFilter Rcpp RcppArmadillo vars]; }; + lpirfs = derive2 { name="lpirfs"; version="0.1.3"; sha256="17jgk0y5xgm3g1wl0mq0sjjw1ghvs009cr5qhh5hpb1k5yk14q4n"; depends=[doParallel dplyr foreach ggplot2 Rcpp RcppArmadillo]; }; lplyr = derive2 { name="lplyr"; version="0.1.12"; sha256="1wcab8wwdzpgb61q83gfn2d34vsrd3qa4xyb9sqna6krss1ii1in"; depends=[bazar dplyr lazyeval magrittr]; }; lpme = derive2 { name="lpme"; version="1.1.1"; sha256="0si90nkgl8bqk8yvd2igdsrngiwqh8891072pfpzipifnd0f5448"; depends=[decon flexmix locpol Rcpp RcppArmadillo]; }; lpmodeler = derive2 { name="lpmodeler"; version="0.2-1"; sha256="17k67l03dkjx61p4hwswghjm6awk0zx173x9xafxrfd8jrgsf6kf"; depends=[slam]; }; lpridge = derive2 { name="lpridge"; version="1.0-8"; sha256="0jk4l95z9rcdqkc8lpp4sf1mg2dqj67rhqw1iafrxy5lx4jfaqqx"; depends=[]; }; - lqa = derive2 { name="lqa"; version="1.0-3"; sha256="141r2cd9kybi6n9jbdsvhza8jdxxqch4z3qizvpazjy8qifng29q"; depends=[]; }; lqmm = derive2 { name="lqmm"; version="1.5.4"; sha256="117g38m650mi28ff19nd71dadbdphd1ladmrip2kbsnkpcz2q37p"; depends=[nlme SparseGrid]; }; lqr = derive2 { name="lqr"; version="1.7"; sha256="110c18wc3y3nkdwjgrksw20kvvy65822njrpy4gwb100ifigw0v7"; depends=[ghyp spatstat]; }; lrequire = derive2 { name="lrequire"; version="0.1.3"; sha256="03c8h9v2xhlv7bj5jv117a27gaqaly2kdxs9zyihsm9yh9rg3d79"; depends=[]; }; @@ -8180,39 +8544,40 @@ in with self; { lsa = derive2 { name="lsa"; version="0.73.1"; sha256="1af8s32hkri1hpngl9skd6s5x6vb8nqzgnkv0s38yvgsja4xm1g5"; depends=[SnowballC]; }; lsasim = derive2 { name="lsasim"; version="1.0.1"; sha256="0bwk6bv0wp30v6p55nyd1hcvwnjjddwccyy1swf6sg7lw3fy657p"; depends=[]; }; lsbclust = derive2 { name="lsbclust"; version="1.0.5"; sha256="005kswkpp3qmrg5ij8999xambyyry5wajkawiwhv45niyi2hlkxv"; depends=[clue doParallel foreach ggplot2 gridExtra mvtnorm plyr Rcpp reshape2]; }; + lsbs = derive2 { name="lsbs"; version="0.1"; sha256="14aq80zg89lq7hffv1v1m4n7hbzqzxkazcga4y2fq40ij3v7kv6n"; depends=[ks Matrix numDeriv]; }; lsdv = derive2 { name="lsdv"; version="1.1"; sha256="0rl1xszr9r8v71j98gjpav30n2ncsci19hjlc9flzs1s20sb1xpr"; depends=[]; }; lsei = derive2 { name="lsei"; version="1.2-0"; sha256="1xl06fb3is744pxlh42wx5hn1h0ab1k31wnmsmh0524kxzcyp0a7"; depends=[]; }; lshorth = derive2 { name="lshorth"; version="0.1-6"; sha256="0nbjakx0zx4fg09fv26pr9dlrbvb7ybi6swg84m2kwjky8399vvx"; depends=[]; }; lsl = derive2 { name="lsl"; version="0.5.6"; sha256="1hwzklx1qp5ljc059j2hridg3caw4cgn7rbqs8xh2arzcvqdw3rb"; depends=[ggplot2 lavaan reshape2]; }; - lslx = derive2 { name="lslx"; version="0.6.2"; sha256="0girzjmkmqym5bnw492991smyhvlz7xw70n8hlswpa4lw3x15q2n"; depends=[ggplot2 lavaan R6 Rcpp RcppEigen]; }; - lsm = derive2 { name="lsm"; version="0.1.6"; sha256="1j68jvb7gvgr77wpq1gzh1jw3cs94im1zrlnvw4jnbgbzsmpql99"; depends=[]; }; + lslx = derive2 { name="lslx"; version="0.6.3"; sha256="1a6s1a2g87h1fd0w5ckjgmanqpvwfp6hh8mshc61917w3g8y1rdg"; depends=[ggplot2 lavaan R6 Rcpp RcppEigen]; }; + lsm = derive2 { name="lsm"; version="0.1.8"; sha256="0h7gyc4wb0y3hvs21h22l57czdd3xfycg400ncz5c9s63r47wzx3"; depends=[]; }; lsmeans = derive2 { name="lsmeans"; version="2.27-62"; sha256="1db9ldk8maj8qr2ha3aa5bz01wv4irkiw561fzjcm9slb0iz1k7z"; depends=[coda estimability multcomp mvtnorm nlme plyr xtable]; }; lspartition = derive2 { name="lspartition"; version="0.1"; sha256="1c2wp9yl0jzvbh181flzywwqmm6xr5jg9qbfibw4ja9wf6xnfx8w"; depends=[combinat ggplot2 MASS matrixStats mgcv pracma]; }; lspline = derive2 { name="lspline"; version="1.0-0"; sha256="0bc1nfpp1r5fi8rrg295k4r8pm03baqplrzwmk3sn4kdbp0apvgk"; depends=[]; }; - lspls = derive2 { name="lspls"; version="0.2-1"; sha256="1g27fqhnx9db0zrxbhqr76agvxy8a5fx1bfy58j2ni76pki1y4rl"; depends=[pls]; }; + lspls = derive2 { name="lspls"; version="0.2-2"; sha256="1cmffkyc881659l9m1miwhr3jfpwb0xb9n5chg317vcm8l9r4wcn"; depends=[pls]; }; lsplsGlm = derive2 { name="lsplsGlm"; version="1.0"; sha256="1qh68r033fwq1hc19h2srl1k6znvvvrcp38ghxadsksjfxllvniy"; depends=[]; }; lsr = derive2 { name="lsr"; version="0.5"; sha256="0q385a3q19i8462lm9fx2bw779n4n8azra5ydrzw59zilprhn03f"; depends=[]; }; lss = derive2 { name="lss"; version="0.52"; sha256="1fvs8p9rhx81xfn450smnd0i1ym06ar6nwwcpl74a66pfi9a5sbp"; depends=[quantreg]; }; + ltable = derive2 { name="ltable"; version="1.0"; sha256="1sx6bknbfkays899yq7wqpvc7izz757smaw9g9i7wii7d7a75plr"; depends=[]; }; ltbayes = derive2 { name="ltbayes"; version="0.4"; sha256="0kv5k56hmc1m7bv5pmmmk46822szsgwqgpwydn0x56az7xn6hjk6"; depends=[mcmc MHadaptive numDeriv]; }; ltm = derive2 { name="ltm"; version="1.1-1"; sha256="1qrgzwx5l58qf5rfp1knxc84r0g943q5sdr3ky74zzwpnmrf2vf7"; depends=[MASS msm polycor]; }; - ltmle = derive2 { name="ltmle"; version="1.0-1"; sha256="0g3nybhxz7mivqkzvlzkasc1m489s4fsi4874wvlhqg3x3mww0x9"; depends=[Matrix matrixStats speedglm]; }; + ltmle = derive2 { name="ltmle"; version="1.1-0"; sha256="1mlsggl0vdnlgf8j0bjmh4zrfdpmkfi9jhar35npxz9r0yfjmw8f"; depends=[Matrix matrixStats speedglm]; }; ltsa = derive2 { name="ltsa"; version="1.4.6"; sha256="10wmw9r00400ng2zlysd8jqgypjclshxj83x32002j2a9cz4f186"; depends=[]; }; ltsbase = derive2 { name="ltsbase"; version="1.0.1"; sha256="16p5ln9ak3h7h0icv5jfi0a3fbw5wdqs3si69sjbn8f5qs2hz7yp"; depends=[MASS robustbase]; }; - ltsk = derive2 { name="ltsk"; version="1.0.5"; sha256="0x142w2l6qaqw1kmx5kix7lkadaw2kl8dqx11d091vqj2imi9wlr"; depends=[fields gstat sp]; }; ltxsparklines = derive2 { name="ltxsparklines"; version="1.1.2"; sha256="1jnygg7wm2768lrrzball8rn8f60xy4nc3a18h4d32jpnbhifj13"; depends=[]; }; lubridate = derive2 { name="lubridate"; version="1.7.4"; sha256="14a823il77w3wmmnzr89vwrqp50y56dh5raycnaw6c8nv5xsh32i"; depends=[Rcpp stringr]; }; luca = derive2 { name="luca"; version="1.0-5"; sha256="1jiqwibkrgga4ahz0qgpfkvrsxjqc55i2nwnm60xddb8hpb6a6qx"; depends=[genetics survival]; }; - lucid = derive2 { name="lucid"; version="1.4"; sha256="1kwl9h7ynp8nhny51xskrbgc3060bawxjkdijhsjzss2hbbygwds"; depends=[nlme]; }; + lucid = derive2 { name="lucid"; version="1.6"; sha256="0acsnvxvr9qr6ib48dg6byqvfdw5rl65j72nvv3pvvisqj22b0pg"; depends=[nlme]; }; lucr = derive2 { name="lucr"; version="0.2.0"; sha256="0v5g72cl9fg3b3ix34bsmjwwqrnm4ivgcd5mm98c5jd8rrz1xkwq"; depends=[httr Rcpp]; }; ludic = derive2 { name="ludic"; version="0.1.6"; sha256="0srs3bx9cw89mlpg8b8vcmz2gnsv729j3n23pnnxgbh2w7xf705b"; depends=[fGarch landpred Matrix Rcpp RcppArmadillo]; }; lue = derive2 { name="lue"; version="0.2.1"; sha256="0is5rd1dz91bzphmfbbzi3s6rgc5g9qza2r26k70xs67dgn0qbjq"; depends=[ncdf4 raster]; }; lulcc = derive2 { name="lulcc"; version="1.0.2"; sha256="1vlaidyqgx5vnf8w2y1a1jmmq7z4195avnv1mryhh414r5r1kpy0"; depends=[lattice raster rasterVis ROCR]; }; - lumberjack = derive2 { name="lumberjack"; version="0.2.0"; sha256="0yn6482wrwinabys3awp0jjnzs6mnv29jjpvr980m1jm15nwva4g"; depends=[R6]; }; + lumberjack = derive2 { name="lumberjack"; version="0.3.0"; sha256="00br82x9n6x96ksqqgahc1ydffl9cv8lysm57pk2mxm0fzbcph2p"; depends=[R6]; }; lunar = derive2 { name="lunar"; version="0.1-04"; sha256="0nkzy6sf40hxkvsnkzmqxk4sfb3nk7ay4rjdnwf2zym30qax74kk"; depends=[]; }; lutz = derive2 { name="lutz"; version="0.2.0"; sha256="1ypi61b0l5pig2lvvq9lmqkqcsxhnf154lxridp0amv5rcmf2fxy"; depends=[V8]; }; luzlogr = derive2 { name="luzlogr"; version="0.2.0"; sha256="0n0cm94aianwcypa0gwdjvyy3dwbkfv6zi1gq2jn57b41fg20lq5"; depends=[assertthat]; }; lvec = derive2 { name="lvec"; version="0.2.2"; sha256="0n1l26n4khlalqd0b9bi7vc3kr5jh6mr56ca0rmnnl6bl9742nr5"; depends=[BH Rcpp]; }; - lvm4net = derive2 { name="lvm4net"; version="0.2"; sha256="0al0answp3rngq69bl3ch6ylil22wdp1c047yi5gbga853p7db0c"; depends=[ellipse ergm igraph MASS network]; }; + lvm4net = derive2 { name="lvm4net"; version="0.2.1"; sha256="0syl3bzrmpm960b2fx893xw79d7lvlhr94r5kdq9z6jayvcyq66c"; depends=[ellipse ergm igraph MASS network]; }; lvnet = derive2 { name="lvnet"; version="0.3.3"; sha256="14jik7kxljlpk0fp3gmy0i6by78higmqz1n88dy8wczcvms66ci0"; depends=[corpcor dplyr glasso lavaan Matrix mvtnorm OpenMx psych qgraph semPlot]; }; lvplot = derive2 { name="lvplot"; version="0.2.0"; sha256="01sisj2vbx2yb5w9cjzyaf9j46vh4kkw05xccq1f7wmsg69zmj6b"; depends=[ggplot2 RColorBrewer]; }; lwgeom = derive2 { name="lwgeom"; version="0.1-4"; sha256="0x58a04sklrr6vr38hbd2900b3bigdfj7zyk6pzj9y7yy5mr2cjg"; depends=[Rcpp sf units]; }; @@ -8221,12 +8586,12 @@ in with self; { m2b = derive2 { name="m2b"; version="1.0"; sha256="0agzw67mmwrw1f61yn24z5w1pgjssdapg3li0a53i3ylnij45mzr"; depends=[caret caTools e1071 geosphere ggplot2 randomForest]; }; m2r = derive2 { name="m2r"; version="1.0.0"; sha256="07zrqhva00jsp9da9ryzi8pjdrwri2mw0mqgg91r3rnl7id8safq"; depends=[gmp memoise mpoly pryr stringr]; }; mAr = derive2 { name="mAr"; version="1.1-2"; sha256="0i9zp8n8i3fxldgvwj045scss533zsv8p476lsla294gp174njr7"; depends=[MASS]; }; - mBvs = derive2 { name="mBvs"; version="1.1"; sha256="0nkm0yyzl3ajjfhprnkr7d4mkvwd86lf6ic9cyqx76isfwwz3wyq"; depends=[]; }; + mBvs = derive2 { name="mBvs"; version="1.3"; sha256="0vxwdi45pd79c3lz507wlw2alvf501q27lwvd34j6y68p3vyv1vj"; depends=[]; }; mExplorer = derive2 { name="mExplorer"; version="1.0.0"; sha256="1563d9r7f25vw5vsph21z3dwz9n40dpaiyx28ay1bbp5i1x2l3rb"; depends=[nnet qusage]; }; - mFilter = derive2 { name="mFilter"; version="0.1-3"; sha256="1cz9d8447iiy7sq47civ1lcjafqdqs40lzxm2a4alw4wy57hc2h6"; depends=[]; }; + mFilter = derive2 { name="mFilter"; version="0.1-4"; sha256="0zfsa301f1sh1wqg9ap63n5p3952y6b37c4whi2sijinfkx4q2vv"; depends=[]; }; mGSZ = derive2 { name="mGSZ"; version="1.0"; sha256="08l98i75h2h8kx9ksvzp5qr8jhf0l6n4j7rg8fcn7hk8chn8v5zh"; depends=[Biobase GSA ismev limma MASS]; }; mHG = derive2 { name="mHG"; version="1.1"; sha256="1rz5ncrvvv9h9grls15apa63v2nh9j87fmp4mwjjil37jx6a5zki"; depends=[]; }; - mMPA = derive2 { name="mMPA"; version="0.1.0"; sha256="1p9rzk1x5ldb3afr53f195vb4jdj8kw50rmv961k2jsw128mrzr5"; depends=[]; }; + mMPA = derive2 { name="mMPA"; version="1.2.0"; sha256="0g4zjknz52fpk7f436j95aw93aa8q2jwcrb1pqkm294kr276nnd9"; depends=[]; }; mQTL = derive2 { name="mQTL"; version="1.0"; sha256="0k80xvkr0b0mp3bj2s558fjxi2zf4k7ggnw6hsjm8lr84i108dks"; depends=[MASS outliers qtl]; }; mRMRe = derive2 { name="mRMRe"; version="2.0.7"; sha256="1njapjphy4b8nvrsnzrf2nbfp7mjizb7wlxgx1igfqncfhbskqfn"; depends=[igraph survival]; }; mRchmadness = derive2 { name="mRchmadness"; version="1.0.0"; sha256="0f6cb3d5dhp6b0dd0fshplp75jjbhx3v9r53pa8gmcfd10hvbqba"; depends=[dplyr glmnet Matrix rvest shiny xml2]; }; @@ -8234,6 +8599,7 @@ in with self; { maGUI = derive2 { name="maGUI"; version="2.2"; sha256="0b0iprpb4mnaj4lpaismr0f1rnq4m0b61imcx8mrffw9mx45qapv"; depends=[affy amap annotate beadarray Biobase BiocInstaller Biostrings Category convert genefilter GEOmetadb GEOquery globaltest GO_db GOstats graph gWidgets gWidgetsRGtk2 impute KEGGgraph KEGGREST limma lumi marray oligo pdInfoBuilder RBGL Rgraphviz RGtk2 RSQLite simpleaffy ssize WGCNA]; }; maRketSim = derive2 { name="maRketSim"; version="0.9.2"; sha256="1cq17zjwyf4i5lcqgxqkw805s4mr6qp89blgpmpxy8gdrbfj93m4"; depends=[]; }; maSAE = derive2 { name="maSAE"; version="0.1-5"; sha256="0v0vlj41j3ddyxv8lld39k1ryrdjin7r6bj13x2agbklb1fd4an1"; depends=[]; }; + mable = derive2 { name="mable"; version="1.0"; sha256="1ny8nfnyqj9c1n4b0m34kadpmnb4k2d81nd66cqxnz8dm9129vqj"; depends=[]; }; maboost = derive2 { name="maboost"; version="1.0-0"; sha256="18d36cgvn8p75nidfr6al458jbzwc1i7x77y1ks50y9phrz3wf65"; depends=[C50 rpart]; }; macc = derive2 { name="macc"; version="1.0.1"; sha256="1qj4mlikbqrxa6m46527xmxdbk7b3l95z6jdgpmi0ifywjiv52a4"; depends=[car lme4 MASS nlme optimx]; }; machQA = derive2 { name="machQA"; version="0.1.4"; sha256="1rdrjy9sxql2c9y691a1jrmgsv7m1ihsschixxb6wc7aahf7mav6"; depends=[machina plyr]; }; @@ -8241,32 +8607,33 @@ in with self; { macleish = derive2 { name="macleish"; version="0.3.2"; sha256="1kna1wq3p6xfzfdhw8dpdfvy4l656xcrra1f0ir86a815pm2a8l3"; depends=[dplyr etl lubridate readr rgdal rgeos sp]; }; mada = derive2 { name="mada"; version="0.5.8"; sha256="17d41kpxjf6h8j83w6jhxm71f03nc8i2aw0xaqzrpcf5rxxy8wv8"; depends=[ellipse mvmeta mvtnorm]; }; maddison = derive2 { name="maddison"; version="0.1"; sha256="1ji51wnj0ybjd30b4bwn5npyswrmcfrbxcmdlngwzvca1knh8g1c"; depends=[]; }; - maditr = derive2 { name="maditr"; version="0.5.1"; sha256="029jhapxssnrnmdf8cmdaw87gdd970538jvz6cq9k9iavw7zki7y"; depends=[data_table magrittr]; }; - madness = derive2 { name="madness"; version="0.2.3"; sha256="0qmqgrjxb0853m9kdi8cl1b9q9dljdi2zylw22asfv77f323413z"; depends=[expm Matrix matrixcalc]; }; + maditr = derive2 { name="maditr"; version="0.6.0"; sha256="1h2qvl84v0lp4fnsraar9kvlglifxjbpsascnrz3db5lrn1w53j0"; depends=[data_table magrittr]; }; + madness = derive2 { name="madness"; version="0.2.5"; sha256="1cdryb65hlqc5b1xm5xs5r3gv8zd4kq17q79345b0p8r0m6addip"; depends=[expm Matrix matrixcalc]; }; madr = derive2 { name="madr"; version="1.0.0"; sha256="0lzg75kphz4a0w6n0jbsq87g72jvrbkyas4j813mryq2nv4lmsl4"; depends=[]; }; madrat = derive2 { name="madrat"; version="1.22.1"; sha256="0wk2svhi4209p8ab8i2g9q22kswpisphb2a9ln5lzwdhnryk4ya9"; depends=[digest magclass spam stringr]; }; mads = derive2 { name="mads"; version="0.1.5"; sha256="1ac34iff9hvl1bxk3gs5s3i311g9y59nd6v9jhvnfd6wfhck7krs"; depends=[mrds]; }; madsim = derive2 { name="madsim"; version="1.2.1"; sha256="11gfyimbz363p5xy1x6rsz5fcgzcr55myc5aaz5lazjkcnfn17aq"; depends=[]; }; mafs = derive2 { name="mafs"; version="0.0.3"; sha256="1apacrk8y5b5ids62vd1kn2k28bya9pydxxmdw2dhjyzkgrakdhn"; depends=[cmprsk colorspace CombMSC Epi etm forecast forecastHybrid fracdiff ggplot2 ggseas gtable munsell numDeriv plyr quadprog Rcpp scales tictoc tidyr timeDate tseries zoo]; }; magclass = derive2 { name="magclass"; version="4.51.1"; sha256="1p4pbwjkn9ic3vqjh9m4b18s78f8wx0815n4dyg9pin8p14klzil"; depends=[abind maptools ncdf4 reshape2 sp]; }; - magic = derive2 { name="magic"; version="1.5-8"; sha256="083cgpp3v03li0h8597b3g21pd9lkbmn9pyssblnhc800mpc52vz"; depends=[abind]; }; + magic = derive2 { name="magic"; version="1.5-9"; sha256="0snmdh6vk0p6ar1swsihisinxrx7l8371dri5lk0z24ysgr5w7gs"; depends=[abind]; }; magicLamp = derive2 { name="magicLamp"; version="0.1.0"; sha256="1nfcnbqd6vawz8l3vgkbhmm462xdvaa4pn6axzmz8hl05xv2k3cv"; depends=[httr tibble]; }; magicaxis = derive2 { name="magicaxis"; version="2.0.3"; sha256="08nkf9k2ijlm52ybncfiwrghy911wpvwpvdvllcz2d4slk1vdakj"; depends=[celestial mapproj MASS plotrix sm]; }; magicfor = derive2 { name="magicfor"; version="0.1.0"; sha256="07l33fczr1x42sfxrsqq4q6r65sdflin6l8f5cgclnvx1858jdip"; depends=[]; }; - magick = derive2 { name="magick"; version="1.9"; sha256="1z6wci73kaqp3ky0pfzq9mifrhs3fdsnlzqx57c3f7aryh6f2ry2"; depends=[curl knitr magrittr Rcpp]; }; + magick = derive2 { name="magick"; version="2.0"; sha256="18y465325mhf48x2jn3jz9khwq1z2aj13wfbdkv8k3hln1sd572m"; depends=[curl magrittr Rcpp]; }; magree = derive2 { name="magree"; version="1.0"; sha256="1qkd6p5g3aigcb0f4d08gc5323alvahzmazm3bzsmz1w033xd1hh"; depends=[]; }; magrittr = derive2 { name="magrittr"; version="1.5"; sha256="1s1ar6rag8m277qcqmdp02gn4awn9bdj9ax0r8s32i59mm1mki05"; depends=[]; }; mail = derive2 { name="mail"; version="1.0"; sha256="1m89cvw5ba4d87kp2dj3f8bvd6sgj9k56prqmw761q919xwprgw6"; depends=[]; }; mailR = derive2 { name="mailR"; version="0.4.1"; sha256="1bfh3fxdqx9f9y3fgklxyslpcvhr9gcj7wsamaxzgrcsaxm8fdlw"; depends=[R_utils rJava stringr]; }; makeFlow = derive2 { name="makeFlow"; version="1.0.2"; sha256="0r7a0klgx144rnks0fhjflnf8vfyyx2544n86nnxkp6cdvw0b4pw"; depends=[dplyr RColorBrewer]; }; + makeParallel = derive2 { name="makeParallel"; version="0.1.1"; sha256="1zm8k3gzxcirq221lh1vbxsjym68vc5s58lxd03s194pgixbwydr"; depends=[CodeDepends codetools whisker]; }; makeProject = derive2 { name="makeProject"; version="1.0"; sha256="09q8xa5j4s5spgzzr3y06l3xis93lqxlx0q66s2nczrhd8nrz3ca"; depends=[]; }; - makedummies = derive2 { name="makedummies"; version="1.1.1"; sha256="0aqf7hfbajfsszmqx1id8pp8yj6fzvdsdis9z4s87llf0vxq4agl"; depends=[]; }; + makedummies = derive2 { name="makedummies"; version="1.1.2"; sha256="122s8cizycbnqc00d1njhnn3xbz9vg42f8vjqgzc9k5dhxx4v8n1"; depends=[]; }; malani = derive2 { name="malani"; version="1.0"; sha256="1jps28gfkiysr356ackxf1my5xz6rpx3a2bv68pziy2614hrqbs9"; depends=[e1071]; }; - malariaAtlas = derive2 { name="malariaAtlas"; version="0.0.1"; sha256="1c1bvfs1azvlci2yrgw5xlr460fdjwikm3vsdfz8lj1xzs1w220c"; depends=[curl dplyr ggplot2 gridExtra httr raster rgdal sp stringi tidyr xml2]; }; + malariaAtlas = derive2 { name="malariaAtlas"; version="0.0.2"; sha256="07hmnaacqkywalsajx5mzql7sil0196k930faaha0ync09idz7kz"; depends=[curl dplyr ggplot2 gridExtra httr raster rgdal rlang sp stringi tidyr xml2]; }; mallet = derive2 { name="mallet"; version="1.0"; sha256="06rksf5nvxp4sizgya7h4sb6fgw3yz212a01dqmc9p5a5wqi76x0"; depends=[rJava]; }; managelocalrepo = derive2 { name="managelocalrepo"; version="0.1.5"; sha256="180b7ikas1kb7phm4l2z1d8wi45wi0qyz2c8rl8ml3f71b4mlzgc"; depends=[assertthat stringr]; }; mandelbrot = derive2 { name="mandelbrot"; version="0.2.0"; sha256="04a288jj8h1a04r584a02wg9dm3c6zifhqwj964ybsvgb4m6g99s"; depends=[reshape2]; }; - manet = derive2 { name="manet"; version="1.0"; sha256="1hb5mv05zcv4s2bpyh3vgkyf4r78fyvcwl3p1kwlwqn9cv1lgci2"; depends=[combinat igraph MCMCpack]; }; + manet = derive2 { name="manet"; version="2.0"; sha256="1dnacgkdjmn7yiqk71qx5jgfipbpvqfdnrdd8wm0b9p8kgw4x7n4"; depends=[combinat igraph mclust MCMCpack]; }; mangoTraining = derive2 { name="mangoTraining"; version="1.0-7"; sha256="0lw46j44jhdcyh079a7zjmxcnv5c6qsfachinlwv3ild1gwggr3p"; depends=[]; }; manhattanly = derive2 { name="manhattanly"; version="0.2.0"; sha256="185fkakx4v35n4gmlpk2kfm2bm8p320q4khkw936m09zx3aqz398"; depends=[ggplot2 magrittr plotly]; }; manifestoR = derive2 { name="manifestoR"; version="1.3.0"; sha256="1bxmlg6fmr4ky9m7b65rrylspwhwc8k9s1cbxnx9dyl33wh39ci6"; depends=[base64enc dplyr DT functional htmltools htmlwidgets httr jsonlite magrittr NLP psych tibble tm zoo]; }; @@ -8275,7 +8642,8 @@ in with self; { mapReasy = derive2 { name="mapReasy"; version="1.0"; sha256="13va0z967ckwxnnianki5aj66km0x6r37nj4mz9qd3b0bps4g2kj"; depends=[Hmisc rgdal sp]; }; mapStats = derive2 { name="mapStats"; version="2.4"; sha256="18pp1sb9p4p300ffvmzjrg5bv1i7f78mhpggq83myc26c3a593na"; depends=[classInt colorspace Hmisc lattice maptools RColorBrewer reshape2 sp survey]; }; mapdata = derive2 { name="mapdata"; version="2.3.0"; sha256="0xnxh73rgcq55zrw81a2bq8yd67bxc2rafp4shf6nyrqj04iip0y"; depends=[maps]; }; - mapedit = derive2 { name="mapedit"; version="0.4.1"; sha256="1dy87kmwra917716r99hp139fbxy3z0cx03cw61b832isizd0b51"; depends=[dplyr htmltools htmlwidgets jsonlite leaflet leaflet_extras mapview miniUI sf shiny]; }; + mapdeck = derive2 { name="mapdeck"; version="0.1.0"; sha256="1d93gg0s0xn4gqrrc6p94fppyhqibfjsmxml2ck6skacryd40wm3"; depends=[googlePolylines htmltools htmlwidgets jsonlite magrittr scales shiny viridisLite]; }; + mapedit = derive2 { name="mapedit"; version="0.4.3"; sha256="0ybd9vbdpr3i3wfpcn36dqj3n9i885xycris2nwgxzc9dxb5ad7a"; depends=[dplyr htmltools htmlwidgets jsonlite leaflet leaflet_extras mapview miniUI sf shiny]; }; mapfit = derive2 { name="mapfit"; version="0.9.7"; sha256="16a318bz3my27qj0xzf40g0q4bh9alg2bm6c8jbwgswf1paq1xmx"; depends=[Matrix]; }; mapfuser = derive2 { name="mapfuser"; version="0.1.2"; sha256="1q7l6rfs6dv76ifizfqq4pdpjpb2zwzd3vvrnhdzh8vw2mrlqcjg"; depends=[doParallel dplyr foreach ggplot2 igraph lazyeval LPmerge mgcv plotly stringi tidyr visNetwork]; }; mapmisc = derive2 { name="mapmisc"; version="1.7.2"; sha256="0w0yvdnxk6gjcc86b6imq764va9f9hjan3ayw7qrbjpqx16fs7dx"; depends=[raster sp]; }; @@ -8284,12 +8652,12 @@ in with self; { mapr = derive2 { name="mapr"; version="0.4.0"; sha256="169ah9v7cpw3hmaj6n575gi1zwazf4vh59n46zghb1x68nc2gqs0"; depends=[data_table ggplot2 gistr jsonlite leaflet RColorBrewer rworldmap sp spocc]; }; maps = derive2 { name="maps"; version="3.3.0"; sha256="05i2ppl5z4p8rawgqmy3z4ia05fcblpq1vvrmrkgkkpdlhczx6hr"; depends=[]; }; mapsRinteractive = derive2 { name="mapsRinteractive"; version="0.1.0"; sha256="1qjc5hffrk2bjw6ihlna1h0k3q9s9i19l0q0mgvcm9wpjy4c8gra"; depends=[gstat raster rgdal rgeos sp]; }; - mapsapi = derive2 { name="mapsapi"; version="0.3.5"; sha256="0v33kkny98xql6m6rp2xh39rsp00r1crpin8gqw5wh5x28n20sna"; depends=[bitops magrittr plyr sf xml2]; }; - maptools = derive2 { name="maptools"; version="0.9-2"; sha256="075lmb3b62171cw2dg8fv1vwmvfzg39r1ji7jwb8s5k9dz88ry1v"; depends=[foreign lattice sp]; }; + mapsapi = derive2 { name="mapsapi"; version="0.3.7"; sha256="1mf971himbcmyfbbjppp1clwdi102kh5cvgyzpfwj9rsgx4mqjfw"; depends=[bitops magrittr plyr sf xml2]; }; + maptools = derive2 { name="maptools"; version="0.9-4"; sha256="1753kgyc4kmbb5h6knz5wgvvvj8v77kzm8lz0kwz05m5k3spa24k"; depends=[foreign lattice sp]; }; maptpx = derive2 { name="maptpx"; version="1.9-2"; sha256="1i5djmjg0lsi7xlkbvn90njq1lbyi74zwc2nldisay4xsbgqg7fj"; depends=[slam]; }; maptree = derive2 { name="maptree"; version="1.4-7"; sha256="1k7v84wvy6wz6g0dyiwvd3lvf78rlfidk60ll4fz7chvr2nrqdp4"; depends=[cluster rpart]; }; - mapview = derive2 { name="mapview"; version="2.4.0"; sha256="0gm9swj2i9f6wk0lc4kpr2f1171lys9pbycw272h3l984x8syy61"; depends=[base64enc brew gdalUtils htmltools htmlwidgets lattice leaflet png raster Rcpp satellite scales sf sp svglite uuid viridisLite webshot]; }; - mar1s = derive2 { name="mar1s"; version="2.1"; sha256="0psjva7nsgar5sj03adjx44pw0sdqnsd96m4g6k8d76pv30m1g7l"; depends=[cmrutils fda zoo]; }; + mapview = derive2 { name="mapview"; version="2.6.0"; sha256="1k8y9kj3qrih3fn0xw7nz0irhprdv8fqpxjad2djsvabmn11l51b"; depends=[base64enc brew htmltools htmlwidgets lattice leaflet png raster Rcpp satellite scales sf sp stars svglite uuid viridisLite webshot]; }; + mar1s = derive2 { name="mar1s"; version="2.1.1"; sha256="1ljkvgxrramfx1rnp2rg6516mjxaa6s96amrnmqymnyjz7wlf37l"; depends=[cmrutils fda zoo]; }; march = derive2 { name="march"; version="1.4"; sha256="1wfhm33k2j5yim56sg0wd02ypfhlp9fc138vmdsdjp6nh4y23hnj"; depends=[]; }; marcher = derive2 { name="marcher"; version="0.0-2"; sha256="0hcxbfrwniih4kvx5sxhlffz1pc87kf52v8hvaf193rhhdykis5q"; depends=[magrittr Matrix minpack_lm mvtnorm numDeriv plyr RColorBrewer scales zoo]; }; marelac = derive2 { name="marelac"; version="2.1.9"; sha256="07xhlsdzz2j5smh3v4hpm8zp4ljg9aa3i67j65hs1cq27q1jg1n7"; depends=[seacarb shape]; }; @@ -8301,27 +8669,29 @@ in with self; { marked = derive2 { name="marked"; version="1.2.1"; sha256="138m1clidyhahpz111iblff2w44m8zp0302vcj46frk1c60c46qi"; depends=[coda expm lme4 Matrix numDeriv optimx R2admb Rcpp TMB truncnorm]; }; markmyassignment = derive2 { name="markmyassignment"; version="0.8.1"; sha256="1y388s73b1zs482d1d7z40kg4hizp46lc3279xspm2ryx4m49mzj"; depends=[checkmate codetools httr lazyeval rlang testthat yaml]; }; markophylo = derive2 { name="markophylo"; version="1.0.6"; sha256="1gyj3ykwh4ljrb5s80hihy7wl89y3p4xkckspvv4ynl9lnsbm7cs"; depends=[ape numDeriv phangorn Rcpp RcppArmadillo]; }; - markovchain = derive2 { name="markovchain"; version="0.6.9.11"; sha256="0mmsj5vskbp7cs28iak5wmvx6ixq9xdd14niv7iixa19mmwc8p1d"; depends=[expm igraph matlab Matrix Rcpp RcppArmadillo RcppParallel]; }; + markovchain = derive2 { name="markovchain"; version="0.6.9.12"; sha256="042qwp0zywbqz99sp70ykjlckfpch5p02szah651x1inp2im8fc6"; depends=[expm igraph matlab Matrix Rcpp RcppArmadillo RcppParallel]; }; marl = derive2 { name="marl"; version="1.0"; sha256="0rndnf3rbcibv3gsrw1kfp5zhg37cw9wwlz0b7dbwprd0m71l3pm"; depends=[]; }; - marmap = derive2 { name="marmap"; version="1.0"; sha256="187zqmpdd4kl5dviphfzdhjlaa9bss1gx4wxxc8zgn4q1g66f4c2"; depends=[adehabitatMA DBI gdistance geosphere ggplot2 ncdf4 plotrix raster reshape2 RSQLite shape sp]; }; + marmap = derive2 { name="marmap"; version="1.0.2"; sha256="03xmp7jz2jja7m92yczc2nlcyv4qlcy7lnj3nk5wb3alh1vxlyga"; depends=[adehabitatMA DBI gdistance geosphere ggplot2 ncdf4 plotrix raster reshape2 RSQLite shape sp]; }; marqLevAlg = derive2 { name="marqLevAlg"; version="1.1"; sha256="1wmqi68g0flrlmj87vwgvyxap0miss0n42qiiw7ypyj4jw9kwm8j"; depends=[]; }; - mase = derive2 { name="mase"; version="0.1.1"; sha256="1s8hcsz3ja3rghsv0fz82mlz4sx7dwx8y7h97minhrnj9aby9g82"; depends=[boot dplyr foreach glmnet magrittr MASS Matrix Rdpack rpms survey]; }; + mase = derive2 { name="mase"; version="0.1.2"; sha256="1023xvv6yngbc183hb13057spjildywqd0jw2w9jway3zv4dbw9v"; depends=[boot dplyr foreach glmnet magrittr Matrix Rdpack rpms survey]; }; mason = derive2 { name="mason"; version="0.2.6"; sha256="01ppc7f18kf4xv4lrhib0cfm85v658grmxpny3h3kdb4pi4rbspy"; depends=[broom dplyr lazyeval magrittr tidyr]; }; matR = derive2 { name="matR"; version="0.9.1"; sha256="1qw2vqmpq7gc3dmr9r000ccjj7xa0h82waxnvryz3l17ggryyjjm"; depends=[BIOM_utils MGRASTer]; }; matchMulti = derive2 { name="matchMulti"; version="1.1.7"; sha256="0k5psmjzcyr7pm603vni7w2hvslck05r81cngm26pql2prdrv5yk"; depends=[coin Hmisc MASS mvtnorm plyr rcbsubset weights]; }; matchbook = derive2 { name="matchbook"; version="1.0.7"; sha256="0xfqg8z2zkn215kqmjjkqdwrgsk7cn4jdpxfgd6razhcbvflg48j"; depends=[]; }; - matchingMarkets = derive2 { name="matchingMarkets"; version="0.3-5"; sha256="083gnqjxvzgqd0lvg13qwzw3cp1imp4xn2nacspfxqg4878jjpn3"; depends=[lattice lpSolve partitions Rcpp RcppArmadillo RcppProgress rJava]; }; + matchingMarkets = derive2 { name="matchingMarkets"; version="0.3-6"; sha256="1vl9gmz155l6qrz0sqpirwhbd99j15zxp7gj8q6m88y5dpnhpkqs"; depends=[lattice lpSolve partitions Rcpp RcppArmadillo RcppProgress rJava]; }; matchingR = derive2 { name="matchingR"; version="1.3.0"; sha256="1rpw5a52alh5diiqr7f87vhpgp3w3f8lg8wkaqvr5idid9fkll1i"; depends=[Rcpp RcppArmadillo]; }; matconv = derive2 { name="matconv"; version="0.3.2"; sha256="0vnmqz5vzv5n0cfpgr30gkl0pv8p2b5cp3ap6mn01sxd671lx38z"; depends=[]; }; mateable = derive2 { name="mateable"; version="0.3.1"; sha256="1ka9xxicibpfg6k3njq5f5576jwj734r1mb46a2cmiyq676ks7pp"; depends=[FNN Rcpp sn]; }; + mathgraph = derive2 { name="mathgraph"; version="0.9-14"; sha256="11wcnjligjc0m0ibi7v5f9w4j2g0fmw33za8407d9fqdb0i5pf60"; depends=[]; }; mathpix = derive2 { name="mathpix"; version="0.3.0"; sha256="1a49yda4r9a6pbs641ch2kmxg3pf8zxfrfi30r19z6g15jfgdrvf"; depends=[base64enc httr magick purrr rstudioapi texPreview]; }; matie = derive2 { name="matie"; version="1.2"; sha256="1ymx49cyvz63imqw5n48grilphiqvvdirwsrv82p7jgxdyav2xv0"; depends=[cba dfoptim gplots igraph mvtnorm seriation]; }; matlab = derive2 { name="matlab"; version="1.0.2"; sha256="0m21k2vzbc5d3c93p2hk4208xyd2av2slg55q5j1ibjidiryqgd2"; depends=[]; }; - matlabr = derive2 { name="matlabr"; version="1.5.0"; sha256="0gy639fv0b85h4z96b2b3m635q4w62q63kfxfqny3pwr0r5vsc2p"; depends=[stringr]; }; + matlabr = derive2 { name="matlabr"; version="1.5.2"; sha256="1ba6cajnzldb1gmn7rf0b198h6mdh58r3frm0z0cmvbinspwz3x7"; depends=[stringr]; }; matlib = derive2 { name="matlib"; version="0.9.1"; sha256="03991ckrfk663pdi9q2a4sms9csr1dkr075dsycqggr96yp1cwh8"; depends=[car MASS rgl xtable]; }; matpow = derive2 { name="matpow"; version="0.1.1"; sha256="1a6q21ba16qfdpykmjwgmrb1kkvvyx48qg8cbgpdmch0vhibcgcp"; depends=[]; }; matrixLaplacian = derive2 { name="matrixLaplacian"; version="1.0"; sha256="1ixqdv3sz3sc79wn3vqhlq79j7x7cvl878m5hgvbcg6klfvlmmci"; depends=[scatterplot3d]; }; - matrixStats = derive2 { name="matrixStats"; version="0.53.1"; sha256="0bkiz5fm09d3512mfr2ymj9qsb1b8aic5l5m6fkaf5j7nsgvqw6z"; depends=[]; }; + matrixProfile = derive2 { name="matrixProfile"; version="0.5.0"; sha256="0nd54k878xf7hzwxawh03c3na4jfvb68afarkwrmmffjlp3i8a9g"; depends=[fftw signal TTR zoo]; }; + matrixStats = derive2 { name="matrixStats"; version="0.54.0"; sha256="0vx00ldsg2zvdrjn49jxczk2c9iaabgvzgpdka5j02ihh7hv83cg"; depends=[]; }; matrixTests = derive2 { name="matrixTests"; version="0.1.0"; sha256="0784wfp14z7lh6ylzgh9kvzs5gwapfs7ksx63jf3qwb95zfwyixx"; depends=[matrixStats]; }; matrixcalc = derive2 { name="matrixcalc"; version="1.0-3"; sha256="1c4w9dhi5w98qj1wwh9bbpnfk39rhiwjbanalr8bi5nmxkpcmrhp"; depends=[]; }; matrixpls = derive2 { name="matrixpls"; version="1.0.5"; sha256="04sshb88rq2mp3y4rrs6nkzr4kc380vx380r911c7j975l55a183"; depends=[assertive lavaan MASS matrixcalc psych]; }; @@ -8331,6 +8701,7 @@ in with self; { maxTPR = derive2 { name="maxTPR"; version="0.1.0"; sha256="13x5rz0mfha5pzahkk4x67ncz9v77sa690cyl6wigwsldsrvzr3h"; depends=[aucm Rsolnp]; }; maxadjAUC = derive2 { name="maxadjAUC"; version="0.1.0"; sha256="04zdaqmavhhrj63s2k5pqncvlzbfnxan7r0fagfka9dypwwcl5qm"; depends=[aucm Hmisc Rsolnp survival]; }; maxent = derive2 { name="maxent"; version="1.3.3.1"; sha256="1skc7d0p6kg0gi1bpgaqn2dmxjzbvcphx5x3idpscxfbplm5v96p"; depends=[Rcpp SparseM tm]; }; + maximin = derive2 { name="maximin"; version="1.0-1"; sha256="1w3b24p6r974jgd7i93wisb25n7hjk0va8bb5n0xxfdrv3z0k591"; depends=[plgp]; }; maxlike = derive2 { name="maxlike"; version="0.1-7"; sha256="0gi33hcjj456sjw7l3q4n46k4cb6m3ml3ycd93pnajxacl24swbb"; depends=[raster]; }; maxmatching = derive2 { name="maxmatching"; version="0.1.0"; sha256="1xbwrhmr8gzvlcprib7nzvqrcd355bhx7wkqxrvfk4g7dvskf9ka"; depends=[igraph]; }; maxnet = derive2 { name="maxnet"; version="0.1.2"; sha256="1rfcylbv068pz4jgry5ijszwf5fibz566s5iv0ar8dhv0fhjr86z"; depends=[glmnet]; }; @@ -8338,23 +8709,25 @@ in with self; { mazeGen = derive2 { name="mazeGen"; version="0.1.3"; sha256="192xygg3l4rpqp49sgd5hpp4h3f8wjhyldn0l8abxhsks7jd2kfb"; depends=[igraph]; }; mazealls = derive2 { name="mazealls"; version="0.2.0"; sha256="14j6syw1zkgs4cnmxzqpm6klmgvck2gg97wkzmy9al6n0biy8gmb"; depends=[TurtleGraphics]; }; mazeinda = derive2 { name="mazeinda"; version="0.0.1"; sha256="0ns4ib73y4fghf7p1wg0a05js4mqr66dpp49p1h039pqrb0f1vwd"; depends=[foreach]; }; - mbbefd = derive2 { name="mbbefd"; version="0.8.8.2"; sha256="1168r9gkz3z1qzh3pjh8s0wlpwlrk2rr1p91ldch9c001ym9y6mz"; depends=[actuar alabama fitdistrplus gsl MASS Rcpp]; }; + mbbefd = derive2 { name="mbbefd"; version="0.8.8.3"; sha256="02iijakxl96m6n1rv0xsacsyjj5b093sl07lmp62hwyv9hf3jh4k"; depends=[actuar alabama fitdistrplus gsl MASS Rcpp]; }; mbclusterwise = derive2 { name="mbclusterwise"; version="1.0"; sha256="1ilqaxcxf1k3ck910s0xqwnp88w8ag5rn1dpvaa1i7jlcldsbnhp"; depends=[ade4 doParallel foreach kknn]; }; mbest = derive2 { name="mbest"; version="0.6"; sha256="1x0f7y5hj6a35wq1xn6g7jyjn9c4zryahwlf07qrypgrcnj2m8vx"; depends=[abind bigmemory foreach lme4 logging nlme]; }; mbgraphic = derive2 { name="mbgraphic"; version="1.0.0"; sha256="0b4xr2ycx8v56fp40lnxv69qfp0yzai2hdwk3kw4wsmir91d2a91"; depends=[diptest dplyr extracat GGally ggplot2 gridExtra hexbin magrittr mgcv Rcpp scagnostics scales seriation shiny]; }; - mbir = derive2 { name="mbir"; version="1.3.1"; sha256="0wprbgjf02ybjn3yakyvz0niv2szarlmmcizdyjsaksh21byd46x"; depends=[]; }; + mbir = derive2 { name="mbir"; version="1.3.4"; sha256="151pixrqg6wj8605vf8cscmh2a1f171k8a4fzkqv4dl8f1ivwphp"; depends=[effsize psych]; }; mblm = derive2 { name="mblm"; version="0.12"; sha256="17h65bapvz89g5in3gkxq541bxgpj9pciz6i5hzhqn0bdbsb3k6r"; depends=[]; }; mbmdr = derive2 { name="mbmdr"; version="2.6"; sha256="0ss5w66hcgd8v8j9bbbp12a720sblhr2hy9kidqfr8hgjaqlch86"; depends=[logistf]; }; - mboost = derive2 { name="mboost"; version="2.9-0"; sha256="0hfw69h3j4hwwrdinmazl4abhij2drki5jp9i9qz30gyy16wf0f2"; depends=[lattice Matrix nnls partykit quadprog stabs survival]; }; + mboost = derive2 { name="mboost"; version="2.9-1"; sha256="02ia3y0fxfjl02fb1nnl93j640fyl18jm15cgxyybhf27w4jdvb7"; depends=[lattice Matrix nnls partykit quadprog stabs survival]; }; mbrglm = derive2 { name="mbrglm"; version="0.0.1"; sha256="0yxq1xk8qy5hpiqqldyrs78lp4ggdp5lj2lmh8rqq1xvsfr6nrh4"; depends=[enrichwith nleqslv]; }; mc2d = derive2 { name="mc2d"; version="0.1-18"; sha256="1ljw8ms661bsdqbfpjvvrif9n0c2i6lzxyqj4rxhxsp3dj18w3g3"; depends=[mvtnorm]; }; mcGlobaloptim = derive2 { name="mcGlobaloptim"; version="0.1"; sha256="1p8841y9a4yq51prv6iirgw9ln8jznx8nk547sc5xlznksjy1g9n"; depends=[randtoolbox snow]; }; mcMST = derive2 { name="mcMST"; version="1.0.1"; sha256="18ka76g9pgpycaw0hl8vxpabd8584q1l5d3xmrzy1zwincsg7vgs"; depends=[BBmisc checkmate ecr ggplot2 gtools lhs parallelMap reshape2 vegan]; }; mcPAFit = derive2 { name="mcPAFit"; version="0.1.4"; sha256="1h5kiry8bvdrgyqf7cqsag0b7rscwc7phayzf6h4css1667bvm0g"; depends=[PAFit RColorBrewer Rcpp]; }; - mcbiopi = derive2 { name="mcbiopi"; version="1.1.2"; sha256="12h4bv3hx1m6bsqdxj5n3b5gh98ms508am8pigz7ckmv0xkyhx85"; depends=[]; }; + mcbiopi = derive2 { name="mcbiopi"; version="1.1.6"; sha256="1caw2sy15hw2zw0bdynwnsa7hn4rly34hlxp06nwm5lssz8l2597"; depends=[]; }; mcc = derive2 { name="mcc"; version="1.0"; sha256="0p661a870bvh3xhcahqqq85azn9rjl3vacjy96jsdn86irj4s0vi"; depends=[]; }; - mcca = derive2 { name="mcca"; version="0.3.0"; sha256="0fmlqk4q2vy7gzxhvb9249f1644jlvy755cpda8kvwp9qk55bp4p"; depends=[caret e1071 MASS nnet pROC rpart]; }; + mcca = derive2 { name="mcca"; version="0.4.0"; sha256="07qqd1v70322s8z20zmhni5kfvy9izl5k2z62gdwkk29d76rg8s1"; depends=[caret e1071 MASS nnet pROC rpart]; }; + mccf1 = derive2 { name="mccf1"; version="1.0"; sha256="1d8dw3kb2p3n3kgpihbxmwvg4blvaiss4s09452xz0d1gkjk4y01"; depends=[ggplot2 ROCR]; }; mcclust = derive2 { name="mcclust"; version="1.0"; sha256="00qprmsjwbn2d0jl7p9mz8pv7k8ld3mzk862pr1grigk0lqwhx06"; depends=[lpSolve]; }; + mccmeiv = derive2 { name="mccmeiv"; version="1.1"; sha256="0k9hbdxzj2nhwckxhm4w69n93xin56c1s3fw93pp5mp82m586y5c"; depends=[numDeriv survival]; }; mccr = derive2 { name="mccr"; version="0.4.4"; sha256="1scqds1yx317qmjappy2h1m564dcmsqqfpdm8pm3plalag16xrhj"; depends=[]; }; mcemGLM = derive2 { name="mcemGLM"; version="1.1"; sha256="07ky3bvcns24qia9pyvf5lp7764h8gn2g8zr304iz4x9bq6jvsi0"; depends=[Rcpp RcppArmadillo trust]; }; mcen = derive2 { name="mcen"; version="1.0"; sha256="0dgic137n3qvxljj3f7j3kq3x2rkblxzg55hjbknspwp0i7i4lx8"; depends=[faraway flexclust glmnet Matrix]; }; @@ -8364,9 +8737,9 @@ in with self; { mcheatmaps = derive2 { name="mcheatmaps"; version="1.0.0"; sha256="1gglm32xpmim38m7fziczgqfbpcq2899lxardsrzg6j1vhmf765y"; depends=[gridBase]; }; mclcar = derive2 { name="mclcar"; version="0.1-9"; sha256="0bwnivmajsrvmwskhk44qhz4nnc0irxq83g0kzbj4wshhivnwryp"; depends=[fields maxLik nleqslv rsm spam spdep]; }; mcll = derive2 { name="mcll"; version="1.2"; sha256="0i9zqbh0l9a9mv4558gbdq9mh52chanykyfwmiymmxygxhp809sz"; depends=[locfit statmod]; }; - mclogit = derive2 { name="mclogit"; version="0.6"; sha256="13n3xbdjbpj0ddq9jv2ssd6llrif38ala6c4schih0328cklgpcj"; depends=[Matrix memisc]; }; + mclogit = derive2 { name="mclogit"; version="0.6.1"; sha256="1flq3g5jbp8nnx066wz35bg8wzlnnp9jp731w87vba483amakcds"; depends=[Matrix memisc]; }; mclust = derive2 { name="mclust"; version="5.4.1"; sha256="1vcl4nl8by2vj2k9k84imy5m850khkgd8q02a8ica1h8vz9ijgn4"; depends=[]; }; - mclustcomp = derive2 { name="mclustcomp"; version="0.3.0"; sha256="02j87p2z9z3b8kxnvnm1syjpv6axcs09fs3mnrl1n2q6jyc4gwsr"; depends=[Rcpp RcppArmadillo Rdpack]; }; + mclustcomp = derive2 { name="mclustcomp"; version="0.3.1"; sha256="0jdfdmgd46w7b38nbpd0lj9vqzi2nnf8fv0crj08lfin5ng7jvaa"; depends=[Rcpp RcppArmadillo Rdpack]; }; mcmc = derive2 { name="mcmc"; version="0.9-5"; sha256="1i3rahph8pbhi5dsyjnkazqklg4lhh3azlyvx4kvabx50q0awxn6"; depends=[]; }; mcmcplots = derive2 { name="mcmcplots"; version="0.4.3"; sha256="0187z79gmvcrwqybxh3ckhcrqi0nqhvcvlczgxfkpq95y5czprdq"; depends=[coda colorspace denstrip sfsmisc]; }; mcmcr = derive2 { name="mcmcr"; version="0.0.1"; sha256="0g64df8v6snbcmk0kynfppq1mqaz9z8apfsm1zn3ch5q2afg0kqy"; depends=[abind checkr coda tibble]; }; @@ -8381,29 +8754,31 @@ in with self; { md = derive2 { name="md"; version="1.0.4"; sha256="13z8f3p84kivk6j58fb1qpzrmml41mq9pgv9nv2gvxrhyhanzi46"; depends=[]; }; md_log = derive2 { name="md.log"; version="0.1.1"; sha256="0ix5nz38xzlhrga40hfhlfss938mrfbni2wysvz2qbpm59qxrhg0"; depends=[futile_logger]; }; mda = derive2 { name="mda"; version="0.4-10"; sha256="19g6kn6g0shidrjfffklbmzc5w7mcimrxhagx4nmpslg59ibqdkh"; depends=[class]; }; - mdatools = derive2 { name="mdatools"; version="0.8.2"; sha256="11xlfgcn8gb19alfjp268mlid9g2rl69s1nlm5plwyy5h8x0hvcj"; depends=[]; }; + mdatools = derive2 { name="mdatools"; version="0.9.1"; sha256="14q4565l7xghwrizc7qn2c6x1wq337h68gww3gxgc9jxs74axzz2"; depends=[]; }; mded = derive2 { name="mded"; version="0.1-2"; sha256="1j8fcz5yc70p9qd9l010xj1b625scdps8z1pqh75b45p2hiqbhlc"; depends=[]; }; mdendro = derive2 { name="mdendro"; version="1.0.0"; sha256="0pxw4zkv38syajcsbcp5f5wn8bw0ah4ay950iyhql044hlmav99j"; depends=[rJava]; }; mdftracks = derive2 { name="mdftracks"; version="0.2.0"; sha256="0l8dc6ljrhbm8jwadaa3xkf6nx90vyiig15p7rryswczz9hw5ga6"; depends=[hellno]; }; - mdmb = derive2 { name="mdmb"; version="0.7-19"; sha256="0clygi60wllc04spbm4982qpnsabjapmbjn5k0k9yl1xbd6960g1"; depends=[CDM coda MASS miceadds Rcpp RcppArmadillo sirt TAM]; }; + mdhglm = derive2 { name="mdhglm"; version="1.8"; sha256="1myky8d2ilwdliqrzd2i5qvja82iz7w6qbigl7h4znpk8pdgrjb3"; depends=[boot Matrix mvtnorm]; }; + mdir_logrank = derive2 { name="mdir.logrank"; version="0.0.4"; sha256="0bhsr005dq9v85sjm2g9xlpksxwzsmsk14g0q5v3hkjvm5wk6xmv"; depends=[MASS]; }; + mdmb = derive2 { name="mdmb"; version="0.11-7"; sha256="15czj7vfghaipppv41ma6ysq1zcfx9v5v33ivvlrzg7cv0dqf6jp"; depends=[CDM coda MASS miceadds Rcpp RcppArmadillo sirt TAM]; }; mdpeer = derive2 { name="mdpeer"; version="1.0.1"; sha256="1vsqhah8h47s8k687fwa352549mdz16mwk1g7rcmhx75c2k85w2q"; depends=[boot ggplot2 glmnet magic nlme nloptr psych reshape2 rootSolve]; }; - mds = derive2 { name="mds"; version="0.1.0"; sha256="16c40m5fmj02is4vw9w284dn9pimlqp905p5ka0jw91krawasd2x"; depends=[lubridate parsedate]; }; - mdsOpt = derive2 { name="mdsOpt"; version="0.3-1"; sha256="0fyzmbaqnj42nhl32cj1kycrqkfx2qvb5vpi0qj98fi6iwsa4psq"; depends=[animation clusterSim plotrix smacof smds spdep symbolicDA]; }; + mds = derive2 { name="mds"; version="0.2.0"; sha256="1z98lz6nfh4x8zg906glj3jfq005hh8h0gzmzmdf7n6fx613p4x2"; depends=[lubridate parsedate]; }; + mdsOpt = derive2 { name="mdsOpt"; version="0.3-2"; sha256="1cdsg4adxy3x1ml68i47v0bgyyrsha2wghc504pski1df1nxz2kg"; depends=[animation clusterSim plotrix smacof smds spdep symbolicDA]; }; mdscore = derive2 { name="mdscore"; version="0.1-3"; sha256="10cl5r6kd9chdik5v0q91x40xpw2cjvvyi220z4bvngpb0989x8j"; depends=[MASS]; }; mdsdt = derive2 { name="mdsdt"; version="1.2"; sha256="0nbzc54jac4wmfyrs821ycxh749cb1zfxcws0nbpk35rydqkc627"; depends=[ellipse mnormt polycor]; }; mdsr = derive2 { name="mdsr"; version="0.1.6"; sha256="1z0sjrvnvm1bgifapmaay57lr5dgj84xzppwn579g8kammaav89x"; depends=[babynames DBI dbplyr downloader dplyr ggplot2 mosaic RMySQL]; }; - mdsstat = derive2 { name="mdsstat"; version="0.1.0"; sha256="0k7sddnydxy39idk8z1j2632xyikpvdjdcm9xk72k0yj0cw6mr9r"; depends=[lubridate mds]; }; + mdsstat = derive2 { name="mdsstat"; version="0.2.0"; sha256="12gr54lpxzs682mln21899gb3ma202a20j87p030p99fp71vbw42"; depends=[lubridate mds]; }; mdw = derive2 { name="mdw"; version="2017.12-03"; sha256="054vssnypbik0yf6smicggnkrqf6kx8k21nbf5rminsh00sx39k1"; depends=[]; }; - meaRtools = derive2 { name="meaRtools"; version="1.0.3"; sha256="03b3267h61kc9xgyl3j2n6i6rmm31rhzdlqa15qifsld23z72rs0"; depends=[emdist ggplot2 gridExtra gtools lattice plyr Rcpp reshape2]; }; + meaRtools = derive2 { name="meaRtools"; version="1.0.4"; sha256="1nxyvdq4670696mhg0svxxlvk9hnr8szai8b18pw6754kmw1bjvn"; depends=[emdist ggplot2 gridExtra gtools lattice plyr Rcpp reshape2]; }; meanShiftR = derive2 { name="meanShiftR"; version="0.52"; sha256="0mignhiz6vjpjbxg4dkc4g5mnf5mr7ifdpj7ickhspallj6l8508"; depends=[]; }; meanr = derive2 { name="meanr"; version="0.1-1"; sha256="080x21jnbsl6qlrgv12p9qd332ciph3lh18fgs9jagfyygf4f9hg"; depends=[]; }; measuRing = derive2 { name="measuRing"; version="0.5"; sha256="0yblqkv5444y75jkb6d0zs728i6vybm294h7b5622pwfjqlfhnh2"; depends=[dplR pastecs png tiff]; }; measurements = derive2 { name="measurements"; version="1.2.0"; sha256="1k47xmydgd9lhc6phr40zphnibiq817f5nf8619ibla2pridjn1l"; depends=[]; }; - measures = derive2 { name="measures"; version="0.1"; sha256="1sksgp7csmwx3z981fhi2pf75kkxhfjy2zkdw8ds5iz95hd236ih"; depends=[]; }; + measures = derive2 { name="measures"; version="0.2"; sha256="1pp6nz30fbsqsvznim9j4vvz3z57sq5r234807flxfy0w7knydbd"; depends=[]; }; meboot = derive2 { name="meboot"; version="1.4-7"; sha256="1i0h71aj49hyj889447s611gz668ys7xlr1i82b5nvaf6chfbfin"; depends=[dynlm nlme]; }; mederrRank = derive2 { name="mederrRank"; version="0.0.8"; sha256="1fvvik3bhjm6c0mhi2ma915986k2nj3lr2839k5hfrr7dg3lw3f4"; depends=[BB numDeriv]; }; medfate = derive2 { name="medfate"; version="0.2.2"; sha256="1vw9j04063sjwyfdkk94xsgz5zps7vmqha6dbsvi8ncb951cfijp"; depends=[meteoland Rcpp sp spdep]; }; - medflex = derive2 { name="medflex"; version="0.6-4"; sha256="0nd9izvmmpdw87y5f0hrz2fml51x53zvvn0irdc1ass3cj1b7bxc"; depends=[boot car Matrix multcomp sandwich]; }; + medflex = derive2 { name="medflex"; version="0.6-6"; sha256="04cjqhyihxf1imbl9y9s58qpy6lmxsh2gwy4bras03hx52slzl5r"; depends=[boot car Matrix multcomp sandwich]; }; mediation = derive2 { name="mediation"; version="4.4.6"; sha256="0prhpy9y26s388p9gv5sv4h5airixwy6ffjphhxmyp9h07088xxi"; depends=[Hmisc lme4 lpSolve MASS Matrix mvtnorm sandwich]; }; medicalrisk = derive2 { name="medicalrisk"; version="1.2"; sha256="1zdxv3rj7768kbyxfvr9n0hp4z7y0sf3r7ssqv731hjjp656l6xp"; depends=[hash plyr reshape2]; }; medicare = derive2 { name="medicare"; version="0.2.1"; sha256="00a1gml2khzisdavnaip6ap4bw45b17nbl9cqb1mqrm4y0p9gm16"; depends=[]; }; @@ -8417,34 +8792,38 @@ in with self; { melviewr = derive2 { name="melviewr"; version="0.0.1"; sha256="19syc3d6zc0hmcjjdj7ibrdqxcdlh95ny970f3ska453qh1898b2"; depends=[cairoDevice gtools gWidgets gWidgetsRGtk2 jsonlite RColorBrewer RGtk2 RNifti]; }; mem = derive2 { name="mem"; version="2.13"; sha256="1k8nda479k7w9jll2wxiasx06nz39vdcz8mssfj33amb6bk874kp"; depends=[boot dplyr EnvStats ggplot2 mclust RColorBrewer RcppRoll reshape2 sm stringr tidyr]; }; memapp = derive2 { name="memapp"; version="2.10"; sha256="0kkim1mrajpc7b20snsrmwcki2mc2winha4lq4ybb22s16isw4p0"; depends=[dplyr DT foreign formattable ggplot2 haven magrittr mem openxlsx plotly RColorBrewer readxl RODBC shiny shinyBS shinydashboard shinyjs shinythemes stringi stringr tidyr]; }; - meme = derive2 { name="meme"; version="0.2.0"; sha256="17zpnspc90nlga3iyl4ahasr70mnrhzja4pz7zhmjddhzjs8x3sz"; depends=[ggplot2 magick showtext sysfonts]; }; + meme = derive2 { name="meme"; version="0.2.1"; sha256="0ddrm82190f8yahnann1l5fwn55msfhhcizbr0vkb098x6m2l251"; depends=[ggplot2 gridGraphics magick showtext sysfonts]; }; memery = derive2 { name="memery"; version="0.5.0"; sha256="0bin1rmna5z0y568jbnga7pcrkgjy04av3bzcyf3fpvqqmn36r8f"; depends=[Cairo colourpicker cowplot ggplot2 jpeg magrittr png purrr shiny shinyBS shinycssloaders showtext sysfonts]; }; memgene = derive2 { name="memgene"; version="1.0"; sha256="00b1mi2hvzzps542mh2p96s27kjqkpcic7djklfcwnfn1m4bz0i5"; depends=[ade4 gdistance raster vegan]; }; - memisc = derive2 { name="memisc"; version="0.99.14.9"; sha256="1gh6shm9nwfjwfi5f4cz2jsldfdnkj6f73279l86wki5gdf36zri"; depends=[lattice MASS repr]; }; + memisc = derive2 { name="memisc"; version="0.99.14.12"; sha256="0n8gl031n33r4iymlp3mnfilm9qwahxssrk4wlxfyp08w4mjlhjl"; depends=[lattice MASS repr]; }; memo = derive2 { name="memo"; version="1.0.1"; sha256="14nvqi1qsin45ksd0wp9cigjk1gghr4jijdqkaqh177dwa244r9j"; depends=[digest]; }; memoise = derive2 { name="memoise"; version="1.1.0"; sha256="034qfc2xlh30x1q2vya239w34a3ir3y2fwnx2agbgbi6592zjxmj"; depends=[digest]; }; + memor = derive2 { name="memor"; version="0.1.1"; sha256="1l54hrbrccl6imfjj6lmb0rsfl5f5f87vaap43i4j0nbbm0y3jsb"; depends=[knitr rmarkdown yaml]; }; memuse = derive2 { name="memuse"; version="4.0-0"; sha256="1g63nssxrgqgzw8qjz8202qpwhps8fbck6pn77j2wsc82dm73y7v"; depends=[]; }; - merDeriv = derive2 { name="merDeriv"; version="0.1-4"; sha256="1gkxc2bf4fx3vbf1nq1g713hhhx7031wchxmgr2ydwfrighwf8qg"; depends=[lme4 Matrix nonnest2 sandwich]; }; + merDeriv = derive2 { name="merDeriv"; version="0.1-5"; sha256="1mnrjppn4gw5rikmdxpdx8xd31wj9f3mvjkfznvhig869wzr6p4z"; depends=[lme4 Matrix nonnest2 sandwich]; }; merTools = derive2 { name="merTools"; version="0.4.1"; sha256="1224cmkxbkd3r10z73ww0s1nyzg00x55fv91pn1gp8p7cmpp0ni2"; depends=[abind arm blme broom dplyr DT foreach ggplot2 lme4 mvtnorm shiny]; }; + merlin = derive2 { name="merlin"; version="0.0.1"; sha256="14k8kz8icj3wgd3li83v0wfl61pdc97r7qjcsmmc5srp36kbw1i9"; depends=[MASS randtoolbox statmod survival]; }; merror = derive2 { name="merror"; version="2.0.2"; sha256="13d9r5r83zai8jnzxaz1ak40876aw20zbpr244gs55rvj5j7f87q"; depends=[]; }; messaging = derive2 { name="messaging"; version="0.1.0"; sha256="0q19cqp1zgh0yhk1ql0jqf414bhx6jwhkairq6wx2cmkli2g7k1y"; depends=[dplyr glue magrittr rlang stringr]; }; - metRology = derive2 { name="metRology"; version="0.9-26-2"; sha256="1i9lxgphn8nmkcp2zgjs6ylbccmfgv9lfch00xmx1xfb538jz82q"; depends=[MASS numDeriv robustbase]; }; + metRology = derive2 { name="metRology"; version="0.9-28-1"; sha256="1syjwblyd18myxrs0hx4m91fgb6zs3r4g7w701j2f2pw6j9mvz0y"; depends=[MASS numDeriv robustbase]; }; metScanR = derive2 { name="metScanR"; version="1.2.0"; sha256="1x32f23w5f3s7sc5gbbqzq9s83clarskj9vpnfnwryrx87dg1jjc"; depends=[geosphere leaflet plyr RColorBrewer RCurl]; }; meta = derive2 { name="meta"; version="4.9-2"; sha256="1hzf6jphgz61d3rq8dqbyw3iddyv2x5a3xik3b606p8si19b66sh"; depends=[]; }; - meta4diag = derive2 { name="meta4diag"; version="2.0.7"; sha256="024rxnqzw9xydy0mm1w38s739qgkzjsifq23bwpvkwj0x0jnwry0"; depends=[caTools shiny shinyBS sp]; }; + meta4diag = derive2 { name="meta4diag"; version="2.0.8"; sha256="1ila8x9r1rdmlwfpzfx1zj5yx1m4yrbhyb74db4wqbh1dswn7zsm"; depends=[caTools shiny shinyBS sp]; }; metaBLUE = derive2 { name="metaBLUE"; version="1.0.0"; sha256="0ppn4bvr10z32pghmv4wjv86k6n5y5bkfxc6h5mvb556v6jnl6d8"; depends=[Matrix]; }; metaBMA = derive2 { name="metaBMA"; version="0.3.9"; sha256="14c3q4aw89r3apzm0ils886xsc6agbn8d2wgp47dc2ddwf5n8p58"; depends=[coda LaplacesDemon logspline mvtnorm runjags]; }; + metaDigitise = derive2 { name="metaDigitise"; version="1.0.0"; sha256="04hycv9dpy39l8fhql69mcn5w97f7sjxrhiz5vbpbawvfbkl0f0l"; depends=[magick purrr]; }; metaLik = derive2 { name="metaLik"; version="0.43.0"; sha256="1li40pgd9z00nrph9njwn6wysb1i9dkpqzcp6fzds6asvcxlqqfl"; depends=[]; }; metaMA = derive2 { name="metaMA"; version="3.1.2"; sha256="1mjyz06q1kc8lhfixpym4ndpnisi1r849fj3da6riwfd6ab1v181"; depends=[limma SMVar]; }; metaMix = derive2 { name="metaMix"; version="0.2"; sha256="0xlsdgincxwjzyr4i8qfmfw2wvgf41qbmyhf2rxcbarf7rmwhmqf"; depends=[data_table ggplot2 gtools Matrix Rmpi]; }; metaRNASeq = derive2 { name="metaRNASeq"; version="1.0.2"; sha256="1xz7df7ypq4326yg429pgxd6aldp14c3h3qi20j5nqr5xgsdgzqa"; depends=[]; }; - metaSEM = derive2 { name="metaSEM"; version="1.1.0"; sha256="1jhlv93a53pnksllrvqiqv5229cvxfa2mk768yncdfv67d04vwj9"; depends=[ellipse lavaan MASS Matrix mvtnorm numDeriv OpenMx]; }; - metaboGSE = derive2 { name="metaboGSE"; version="1.0.2"; sha256="1nfcjplry2ba98yi3flk6zcvlys57gri3582mylh543xkcvlrifz"; depends=[AnnotationDbi ape Matrix sybil topGO]; }; + metaSEM = derive2 { name="metaSEM"; version="1.2.0"; sha256="0b10as2bb5f31r59548v1j8saxd16icrsg915j2yv3nxzyi5iq7f"; depends=[ellipse lavaan MASS Matrix mvtnorm numDeriv OpenMx]; }; + metaboGSE = derive2 { name="metaboGSE"; version="1.1.0"; sha256="0idx3vsn2jdxyii6y3h5is7rh084brng1dvalqjjqbbhwjcg51vc"; depends=[AnnotationDbi ape Matrix sybil topGO]; }; metabolomics = derive2 { name="metabolomics"; version="0.1.4"; sha256="0m5d2784mkpkkg396y3vpvf38vmba5kvxarilq3zf818vjs4pnax"; depends=[crmn gplots limma]; }; metacart = derive2 { name="metacart"; version="1.0-0"; sha256="13dp9yz6yjd2jc7lf3w3ac3vk69ry7zygf6xnvzrcwsdmxd0258n"; depends=[ggplot2 gridExtra rpart rpart_plot]; }; - metacoder = derive2 { name="metacoder"; version="0.2.1"; sha256="1l054p870679ni57l234bvma88s7cpr2ddryb87dxfh5510y86bb"; depends=[ape biomformat cowplot crayon dplyr GA ggfittext ggplot2 ggrepel igraph lazyeval magrittr phylotate RColorBrewer Rcpp RCurl readr reshape reshape2 rlang scales seqinr stringr taxa taxize traits vegan zoo]; }; - metacom = derive2 { name="metacom"; version="1.5.0"; sha256="1zsnzzxv3vsj1swybhh6g8ddffp4xrn081y192xa6a78ii8q4kav"; depends=[vegan]; }; + metacoder = derive2 { name="metacoder"; version="0.3.0"; sha256="10gg7kqp512xdfhkpjk48xcfiwc04967lxkhxhfblm6y5fmgwjba"; depends=[ape biomformat cowplot crayon dplyr GA ggfittext ggplot2 ggrepel igraph lazyeval magrittr phyloseq phylotate RColorBrewer Rcpp RCurl readr reshape reshape2 rlang scales seqinr stringr svglite taxa taxize traits vegan zoo]; }; + metacom = derive2 { name="metacom"; version="1.5.1"; sha256="18n3mbmjna3db44gscsdgv1j8f11jhikiw7yg3vbw2a9v5w3ypkv"; depends=[vegan]; }; metacor = derive2 { name="metacor"; version="1.0-2"; sha256="04k3ph0yg3jp8x4g6l1h4m0qwl51mx0626xmm0fzr1pv4b4a1ypw"; depends=[gsl rmeta]; }; + metadynminer = derive2 { name="metadynminer"; version="0.1.2"; sha256="1py7m8l4fjswap0h41svgg8r1vhsvzxc2g3631php93k1fnpz0v7"; depends=[Rcpp]; }; metafolio = derive2 { name="metafolio"; version="0.1.0"; sha256="18s78lljwnn3j0l3mqc0svszcb3c8yzyzlpnimndbiq9yxagxnnf"; depends=[colorspace MASS plyr Rcpp RcppArmadillo]; }; metafor = derive2 { name="metafor"; version="2.0-0"; sha256="0h14wd7hr1d40p5r70f2jgdgj24jwpnr4nrj6yp5qjr466v81z96"; depends=[Matrix nlme]; }; metaforest = derive2 { name="metaforest"; version="0.1.2"; sha256="0ppv9vdwxggccn2202snl13vid3v2kx5ps81cadghg2kcd8axfbs"; depends=[ggplot2 gtable metafor mmpf ranger]; }; @@ -8453,10 +8832,11 @@ in with self; { metagen = derive2 { name="metagen"; version="1.0"; sha256="0jvbm22976aqvmfnjzs51n2w099yj5hpx6hd0pgvbia80jk7b9vk"; depends=[BatchExperiments BatchJobs BBmisc ggplot2 lhs MASS metafor ParamHelpers plyr]; }; metaheur = derive2 { name="metaheur"; version="0.2.0"; sha256="1rr5mjx3v87alj7cl9hxldvhhbpkz1fzmymmkqv0hs65pny6gbqw"; depends=[doParallel foreach ggplot2 preprocomb reshape2]; }; metaheuristicOpt = derive2 { name="metaheuristicOpt"; version="1.0.0"; sha256="1wzy5dnmrdfdj1386snjyisrbzbq8v4qsnq57l3wvkg1pgnz1vh2"; depends=[]; }; + metamedian = derive2 { name="metamedian"; version="0.1.0"; sha256="0xs967cy7z04ry90h8q38znd6idg960g5dq4dy5a8ff5qb34kflc"; depends=[Hmisc metafor]; }; metamisc = derive2 { name="metamisc"; version="0.1.9"; sha256="0wjwx7ncplpchwbz0l4xmsmy0faj2wnqjxvxyi05992v3rjv4j8k"; depends=[ellipse ggplot2 lme4 metafor mvtnorm plyr]; }; - metansue = derive2 { name="metansue"; version="2.1"; sha256="0mklpnb9m0pynz3x0fin003zz0n1v6i0fdcahny70y1yxiy5agcs"; depends=[]; }; - metap = derive2 { name="metap"; version="0.9"; sha256="03vg0mb6q7j2z0pkxykbak0hcp6dcak7zxs1lw9hswz9kqrq5jhz"; depends=[lattice]; }; - metaplot = derive2 { name="metaplot"; version="0.4.9"; sha256="1nbnyh03n1kkkl4v80nbbbnkrzs1a5ri210x9q4m2v87jrcikllw"; depends=[dplyr encode lattice magrittr rlang tidyr]; }; + metansue = derive2 { name="metansue"; version="2.2"; sha256="0qawsgskvsaj0h6igb4phajs5wwjrr1j07dpn86b6r0fdc2y2xzj"; depends=[]; }; + metap = derive2 { name="metap"; version="1.0"; sha256="18rzvqfzyk8fn54gjvy2qd21nk9w69j7ihww477ma3f3ab6i982h"; depends=[lattice Rdpack]; }; + metaplot = derive2 { name="metaplot"; version="0.8.0"; sha256="10nb3xiy2dqxk51dpyg435r99hmj23agi2kly7y7vy2404142bq6"; depends=[dplyr encode ggplot2 gridExtra gtable lattice magrittr rlang scales tidyr]; }; metaplotr = derive2 { name="metaplotr"; version="0.0.3"; sha256="01iala6cxsxv30fnlh80md5mpy3ksd2piw90zcls8f68g1c6v1jy"; depends=[ggplot2 gridExtra]; }; metaplus = derive2 { name="metaplus"; version="0.7-11"; sha256="05pkgw0zlq3q9mvdw2yxz9mxzqwq3c8q6cwvh87cigw1pf8y9an7"; depends=[bbmle boot fastGHQuad lme4 MASS metafor numDeriv]; }; metasens = derive2 { name="metasens"; version="0.3-2"; sha256="1wxp6gzq3wmas8hm8vqxclawxkc4p8dw2apzmg0nciqvas6dzic8"; depends=[meta]; }; @@ -8467,24 +8847,24 @@ in with self; { meteo = derive2 { name="meteo"; version="0.1-5"; sha256="0n37plka9vsxwd03lca3h6m8dcz3f1bi46jn3bz7vyilnkq9hcdk"; depends=[gstat plyr raster rgdal snowfall sp spacetime]; }; meteoForecast = derive2 { name="meteoForecast"; version="0.52"; sha256="1v9p2l45jzzim10pmy4y1hzc68sxawd996sri6dw7hnalfqfiyxj"; depends=[ncdf4 raster sp XML zoo]; }; meteogRam = derive2 { name="meteogRam"; version="1.0"; sha256="167gyxjnl4dyfqs3znv8sdpkvpqdxzdqi1g730s30gycrm9snap9"; depends=[ggplot2 RadioSonde]; }; - meteoland = derive2 { name="meteoland"; version="0.7.1"; sha256="1nsn4z3gbkcdhgyn13fjcpsyb0lb85kiyy6fhirlnw63dwr56a2l"; depends=[curl ncdf4 ncdf4_helpers qmap Rcpp rgdal sp spdep]; }; + meteoland = derive2 { name="meteoland"; version="0.7.7"; sha256="0gsj44kigfiq92qg7aiw6ln0i421zf4vjs4w298ci0c9hd1lmphl"; depends=[httr jsonlite knitr ncdf4 ncdf4_helpers Rcpp rgdal sp spdep]; }; metricTester = derive2 { name="metricTester"; version="1.3.4"; sha256="1z4z8km1jr0azh2zxp1sffm5picc9y6w9yn68zr1axli0l64y3a0"; depends=[ape doParallel dplyr foreach geiger MASS picante plotrix spacodiR]; }; metricsgraphics = derive2 { name="metricsgraphics"; version="0.9.0"; sha256="1zbx82b34y0rr4w7rzvyc1nzk95w6cdkg0j1kkshbmkvplq6v9i4"; depends=[htmltools htmlwidgets magrittr]; }; - mets = derive2 { name="mets"; version="1.2.3.1"; sha256="0v6w2gy88mds9ynmlbdx67zhl61x71i9nj2km5wvzrn5kcn1500p"; depends=[lava numDeriv Rcpp RcppArmadillo survival timereg]; }; + mets = derive2 { name="mets"; version="1.2.4"; sha256="1xchww1y9zf2h5qfqa1j0vhzzccrh9qj4xzgr23p5svjgcqx8r1b"; depends=[lava numDeriv Rcpp RcppArmadillo survival timereg]; }; mev = derive2 { name="mev"; version="1.11"; sha256="0iqcslnchap8zh4s3bllqqb8z0klpzg2pn8ays1xk66lj5ywl390"; depends=[boot evd gmm ismev nleqslv nloptr numDeriv Rcpp RcppArmadillo revdbayes rootSolve]; }; mewAvg = derive2 { name="mewAvg"; version="0.3.0"; sha256="16gc78ccjffp9qgc7rs622jql54ij83ygvph3hz19wpk22m96glm"; depends=[]; }; mexhaz = derive2 { name="mexhaz"; version="1.5"; sha256="0my53dg321xfbbkxawxcggnh5gw9qkliji5gsdb8m1fi37djd67w"; depends=[MASS numDeriv statmod survival]; }; - mfGARCH = derive2 { name="mfGARCH"; version="0.1.5"; sha256="0p7cnizhf1cgkzhja74p257k31hb6b7y4qnn3k9yawscdmg3zy50"; depends=[numDeriv Rcpp zoo]; }; + mfGARCH = derive2 { name="mfGARCH"; version="0.1.7"; sha256="086596dj6xz7by6rwddvyl7ap341q5hmpc6pslcjn0yvbc7j0wkh"; depends=[numDeriv Rcpp zoo]; }; mfe = derive2 { name="mfe"; version="0.1.1"; sha256="0z9ddkck1z14b9cwvaam0xh869lh2fsjm1d3i8giyrcry0vvpp61"; depends=[cluster e1071 infotheo MASS rpart rrcov]; }; mfp = derive2 { name="mfp"; version="1.5.2"; sha256="1i90ggbyk2p1ym7xvbf4rhyl51kmfp6ibc1dnmphgw15wy56y97a"; depends=[survival]; }; mfx = derive2 { name="mfx"; version="1.1"; sha256="1zhpk38k7vdq0pyqi1s858ns19qycs3nznpa00yv8sz9n798wnn5"; depends=[betareg lmtest MASS sandwich]; }; mgarchBEKK = derive2 { name="mgarchBEKK"; version="0.0.2"; sha256="1k4c34srnckbh5kchzmm44l91ma9sw0gi4y225igs3cl79212q9c"; depends=[mvtnorm tseries]; }; mgc = derive2 { name="mgc"; version="1.0.1"; sha256="0bdj890v2rinsddny8kwa48cgqh9qlzfd7k5s4i9mg40ajr0f291"; depends=[MASS SDMTools]; }; mgcViz = derive2 { name="mgcViz"; version="0.1.1"; sha256="1vv76cmfva1lsi921i337m44m9vykfp4rb9xidxww8dk3i9agg97"; depends=[colourpicker data_table dplyr GGally ggplot2 gridExtra KernSmooth matrixStats mgcv miniUI mvnfast plotly plyr qgam rgl rstudioapi shiny viridis]; }; - mgcv = derive2 { name="mgcv"; version="1.8-24"; sha256="15b76m1f0hz8dbmj9shqvslihdx5b7c48vck9grj5xs1z2y45r9c"; depends=[Matrix nlme]; }; + mgcv = derive2 { name="mgcv"; version="1.8-25"; sha256="1y2rq6v45pr2wcxihhgmingcdvcsilim2cvskrlb7k2n00qg6v2q"; depends=[Matrix nlme]; }; mglR = derive2 { name="mglR"; version="0.1.0"; sha256="1b7nd913d4a1szgw2qnhlnjqhfxr95xag6jwjcb2wnnxd12lib7n"; depends=[biomaRt dplyr gdata ggplot2 gplots magrittr stringr]; }; mglmn = derive2 { name="mglmn"; version="0.0.2"; sha256="1ijkmr85s4yya0hfwcyqqskbprnkcbq8sc9c889i0gy0543fgqz4"; depends=[mvabund snowfall]; }; - mgm = derive2 { name="mgm"; version="1.2-3"; sha256="066k5z99dssp9w5iav68mka68li1r7f5x2qbp21gnc89syrsqwnw"; depends=[glmnet gtools Hmisc matrixcalc qgraph stringr]; }; + mgm = derive2 { name="mgm"; version="1.2-4"; sha256="0fyg9dxvrl3biamqc908z1vc7pji1n4l2bwxjfdkwjb5cf6snd3f"; depends=[glmnet gtools Hmisc matrixcalc qgraph stringr]; }; mgpd = derive2 { name="mgpd"; version="1.99"; sha256="0cxpgza9i0hjm5w1i5crzlgh740v143120zwjn95cav8pk8n2wyb"; depends=[corpcor evd fields numDeriv]; }; mgraph = derive2 { name="mgraph"; version="1.03"; sha256="0av2c0jvqsdfb3i0s0498wcms0n2mm0z3nnl98mx2fy7wz34z8b2"; depends=[rgdal]; }; mgsub = derive2 { name="mgsub"; version="1.5.0"; sha256="03w40vs3vfyrksnzbawyvp02kwrmn7cqhlv6xhfzfbh8jmz55wvr"; depends=[]; }; @@ -8493,6 +8873,7 @@ in with self; { mhsmm = derive2 { name="mhsmm"; version="0.4.16"; sha256="009dj0zkj1zry7jr9hf4cknb686z50a2l967if64xm0dvjmp7dgs"; depends=[mvtnorm]; }; mht = derive2 { name="mht"; version="3.1.2"; sha256="01zcaf9k0qayzm8dn5dvnm5n3qgqpj8r96qhqaa5vbjcr6ci2x2r"; depends=[glmnet Matrix]; }; mhtboot = derive2 { name="mhtboot"; version="1.3.3"; sha256="1z0p8ny9lpnrshgas7cad2lv7j0blw0n6ihiimw600n70h73jwrn"; depends=[ggplot2 reshape2]; }; + mhurdle = derive2 { name="mhurdle"; version="1.1-8"; sha256="0nnzhcp9ghx2ifaj8lvhvv1acb3dpwi8m9n1al8zjvfg35wmxwwm"; depends=[Formula maxLik survival texreg truncreg]; }; mi = derive2 { name="mi"; version="1.0"; sha256="1h47k5mpbvhid83277dvvj2di493bgzz9iarpyv3r30y219l7x1l"; depends=[arm Matrix]; }; miCoPTCM = derive2 { name="miCoPTCM"; version="1.0"; sha256="1lmf6zahfp59ylhdp2cbr7y3vayhim72zazimg4qfld4r9d6kygc"; depends=[distr MASS nleqslv survival]; }; miLineage = derive2 { name="miLineage"; version="2.1"; sha256="0660vk44ywmj0q2cw7pa2z1r039ncw693dnz7zlgc0ipwak3b0ry"; depends=[data_table geepack MASS]; }; @@ -8504,24 +8885,24 @@ in with self; { micEconCES = derive2 { name="micEconCES"; version="0.9-8"; sha256="06g6z8hf7y9d942w6gya0fd5aidzfjkx3280gjygdlwpv7nlpqzv"; depends=[car DEoptim micEcon minpack_lm miscTools systemfit]; }; micEconIndex = derive2 { name="micEconIndex"; version="0.1-6"; sha256="1ihly6qpyg1pms4nkvs6khxxqwr3fwg57i8pg0yhyy1apqxyj2xl"; depends=[miscTools]; }; micEconSNQP = derive2 { name="micEconSNQP"; version="0.6-6"; sha256="1n3pxapc90iz1w3plaqflayd0b1jqd65yw5nbbm9xz0ih132dby9"; depends=[MASS miscTools systemfit]; }; - mice = derive2 { name="mice"; version="3.1.0"; sha256="0xpn215yfzib4hw09cwilnyg9zbvq460njavfvm84mvgwbm25byi"; depends=[broom dplyr lattice MASS mitml nnet Rcpp rlang rpart survival]; }; + mice = derive2 { name="mice"; version="3.3.0"; sha256="1p0ipbqk5aqdi7iikw3qrjyvdi9sdhpnw1h5mwakwvv0yl0pzbyx"; depends=[broom dplyr lattice MASS mitml nnet Rcpp rlang rpart survival]; }; miceExt = derive2 { name="miceExt"; version="1.1.0"; sha256="07xj9f5w0kh4d1yj8mx1jydvhd0vwpvvrb6h67xz5gb1ban4k6c6"; depends=[mice RANN RANN_L1]; }; miceFast = derive2 { name="miceFast"; version="0.2.3"; sha256="0ngb2qs71x0i8ffyb1qlbz2wk6c87m1r74l547c5pc9agnc227m0"; depends=[Rcpp RcppArmadillo]; }; - miceMNAR = derive2 { name="miceMNAR"; version="1.0.1"; sha256="1f9cikqcyj5hh8ray2bx8yhhvv378vsk5d6k7hl44c54qgna61cf"; depends=[GJRM mice mvtnorm pbivnorm sampleSelection]; }; - miceadds = derive2 { name="miceadds"; version="2.13-63"; sha256="1a4d0bvvc2w9d6zp8pxrcgsn8jrydbkl5wwafm6zak54z6rsipj4"; depends=[CDM coda lme4 MASS mice mitools mvtnorm Rcpp RcppArmadillo sirt TAM]; }; - micemd = derive2 { name="micemd"; version="1.2.0"; sha256="0l4qzhkxy43xwgfqp2c638fimixdrm94hgiabfds3sc1vbxma4r8"; depends=[abind digest jomo lme4 MASS Matrix mice mvmeta mvtnorm nlme]; }; + miceMNAR = derive2 { name="miceMNAR"; version="1.0.2"; sha256="1s607icaf3c25mn8xdi3zkzmm8m7qd9a6vjdlz5j7ig2gc9f2y2d"; depends=[GJRM mice mvtnorm pbivnorm sampleSelection]; }; + miceadds = derive2 { name="miceadds"; version="2.15-22"; sha256="0069qijlk1nvk1rgm5ki5d3914sgxszk1d9hlnpipq0qwrn99kmy"; depends=[CDM coda lme4 MASS mice mitools mvtnorm Rcpp RcppArmadillo sirt TAM]; }; + micemd = derive2 { name="micemd"; version="1.4.0"; sha256="0annxirq2klldbx5fkfkzmf2gqy7zk1mpwmyhqr8halagmwa12k6"; depends=[abind digest jomo lme4 MASS Matrix mice mvmeta mvtnorm nlme]; }; micompr = derive2 { name="micompr"; version="1.1.0"; sha256="0qsxs35mmqx8hpszcb1z87xczh0vh0m0plqrj22af5mjjvif76n9"; depends=[]; }; microPop = derive2 { name="microPop"; version="1.4"; sha256="0dfqn7g445w4nydklvsq5vlkiin6kcz8kkazj7jfbm98ikdywzm8"; depends=[deSolve]; }; microbats = derive2 { name="microbats"; version="0.1-1"; sha256="1mahvblaiwg1xk2s34wd1ic8ddc9lh6g0azik2pd97bsf0krkyw8"; depends=[]; }; - microbenchmark = derive2 { name="microbenchmark"; version="1.4-4"; sha256="0fv2w2vsiz18imf4115nd9chhmf275w2mb49pn7pkxi6z3bamc9c"; depends=[]; }; + microbenchmark = derive2 { name="microbenchmark"; version="1.4-6"; sha256="1sn1fxgzakm5iqbgc35g3k4yi0iqrkmwz33cvdrphrzh1lxnmi3s"; depends=[]; }; microclass = derive2 { name="microclass"; version="1.1"; sha256="0hl2s4135k187f0vqmj9snvmnwa5k9fg8ahivfs7ciknrcxfv3nk"; depends=[microcontax microseq Rcpp RcppEigen RcppParallel]; }; microcontax = derive2 { name="microcontax"; version="1.0"; sha256="0l5mfgda5xagjbh9bwv328k3m7kgggdm90rc8fr1ic59hvg56f3g"; depends=[microseq]; }; - microdemic = derive2 { name="microdemic"; version="0.3.0"; sha256="1hrl458jwrgjm7ds4scmicf39ssw1gbjxqaq95lhlwi9n0prd7jn"; depends=[crul data_table jsonlite tibble]; }; + microdemic = derive2 { name="microdemic"; version="0.4.0"; sha256="0i4pkrw02ad8ssvryndf7pxgk5wcyn4126yvl28fxk38249kvc9v"; depends=[crul data_table jsonlite tibble]; }; micromap = derive2 { name="micromap"; version="1.9.3"; sha256="1iciwy0kcg4qa0xc4gkqcilq33ac1s184vw13cbbkv0d1b5cgkgv"; depends=[ggplot2 maptools RColorBrewer rgdal sp]; }; micromapST = derive2 { name="micromapST"; version="1.1.1"; sha256="15ch132x3wnpf7rmy25nah7iyfxfk90p7lvavqjhrnavhjsfxbxx"; depends=[labeling RColorBrewer stringr]; }; micropan = derive2 { name="micropan"; version="1.2"; sha256="1b3hd5c6l9njns372zhqfryibrpqmrjxmc1p5gzdwm7450cs7qky"; depends=[BH igraph microseq Rcpp]; }; - microplot = derive2 { name="microplot"; version="1.0-39"; sha256="191rgmcq405c91dv0zk7in2r71n8d1m04w624950ykq6qhdjpmpp"; depends=[cowplot ggplot2 HH Hmisc htmltools lattice ReporteRs]; }; - microsamplingDesign = derive2 { name="microsamplingDesign"; version="1.0.2"; sha256="1wddf09p803hi28kzn6sq86zhgldxi34rrj7c0bpzy476abnp45s"; depends=[abind deSolve devtools ggplot2 gridExtra gtools knitr MASS matrixcalc matrixStats plyr Rcpp RcppArmadillo readr reshape2 shiny stringr]; }; + microplot = derive2 { name="microplot"; version="1.0-42"; sha256="062dd4k6ryyl44lwbc2qgdsfcs1fiv9j2n6lx9driw6vng533b6q"; depends=[cowplot flextable ggplot2 HH Hmisc htmltools lattice officer]; }; + microsamplingDesign = derive2 { name="microsamplingDesign"; version="1.0.5"; sha256="0dybi3l1cyndn72h7dic2n8ll8xnkd837pyvmqkcivckhsl43p9w"; depends=[abind deSolve devtools ggplot2 gridExtra gtools knitr MASS matrixcalc matrixStats plyr Rcpp RcppArmadillo readr reshape2 shiny stringr]; }; microseq = derive2 { name="microseq"; version="1.2.2"; sha256="1h828iviraqrm43lhd0s3r7rdlakc6yfc6ngrcrkacpflfcmx3c7"; depends=[Rcpp]; }; microsynth = derive2 { name="microsynth"; version="1.0.9"; sha256="06k7lag0vlzhrq5x6h7m8q9n209hfal3dzzmpjgxb6i9xdigkr6h"; depends=[boot kernlab LowRankQP MASS nleqslv pracma survey]; }; midas = derive2 { name="midas"; version="1.0.1"; sha256="1alqxk23651jnkg0xn4rpvk71z5rhvx3y0wjrgkw2qw95s7jjn72"; depends=[shiny xml2]; }; @@ -8533,9 +8914,9 @@ in with self; { migui = derive2 { name="migui"; version="1.1"; sha256="1qchjsc7ff2b6s9w6ncj9knjv6pyp90jd4jxljn2rr1ix1gc45za"; depends=[arm gWidgets2 mi]; }; miic = derive2 { name="miic"; version="1.0.3"; sha256="088szscn9v9279w86mypxphp3avv17iijvcvlckx3h1ka75lkx27"; depends=[bnlearn igraph MASS ppcor Rcpp]; }; milr = derive2 { name="milr"; version="0.3.0"; sha256="0z4d22fd6gd3zbi973vws9jqyh4c4m4i4ajcpxv934vxmbj0cma9"; depends=[glmnet numDeriv pipeR Rcpp RcppArmadillo RcppParallel]; }; - mime = derive2 { name="mime"; version="0.5"; sha256="0i91m3ivaja1k33jwcvz16pfjypkci27awm8glil7sxhmwaj3izw"; depends=[]; }; + mime = derive2 { name="mime"; version="0.6"; sha256="00f4gw4sg1kn03s67gficxgb7a7fb6pwhlvrxrml05q1mc2vcxa7"; depends=[]; }; minPtest = derive2 { name="minPtest"; version="1.7"; sha256="088kckpbfy2yp0pk3zrixrimywrvkaib5ywa7fkr5phnzlsl80sv"; depends=[Epi scrime]; }; - mindr = derive2 { name="mindr"; version="1.1.0"; sha256="102r7m6jiadgmkw4w7535ba2qfxknj00y4b9hhawcjqm5v67jipz"; depends=[htmlwidgets]; }; + mindr = derive2 { name="mindr"; version="1.1.5"; sha256="02yszk13h5mm2wyx81byij152r8lj5j7r65icq3cl5skxygl43y7"; depends=[htmlwidgets]; }; mineCitrus = derive2 { name="mineCitrus"; version="1.0.0"; sha256="031nfhrsc5rlqls3vyrk18lx0pd4ssdk96cmfr4ifaciz0rgv8h2"; depends=[ggplot2]; }; minerva = derive2 { name="minerva"; version="1.4.7"; sha256="19snlbnk4y0lj7kfypa2g1d1s7bl3xkrxabn8p15hlwwcfb0x7vm"; depends=[]; }; miniCRAN = derive2 { name="miniCRAN"; version="0.2.11"; sha256="1ffc367ipcxyk2a8f2y46xa01rbr5254cryf1qzzfflb3xj8n6pa"; depends=[httr igraph XML]; }; @@ -8551,9 +8932,9 @@ in with self; { minque = derive2 { name="minque"; version="1.1"; sha256="1hx4j38213hs8lssf9kj5s423imk7dzv60mdbzrpbp7la7jk2n57"; depends=[klaR Matrix]; }; minval = derive2 { name="minval"; version="0.8-1"; sha256="11sr69hmqnh5g2zbfajy3wqc57759basky1w72dnrd38rq50llxs"; depends=[]; }; minxent = derive2 { name="minxent"; version="0.01"; sha256="1a0kak4ff1mnpvc9arr3sihp4adialnxxyaacdgmwpw61wgcir7h"; depends=[]; }; - mipfp = derive2 { name="mipfp"; version="3.2"; sha256="1mds51vkqs2jc5kvxhzh2dmazxgbc14ahg1lxs9mn82my2p743f8"; depends=[cmm numDeriv Rsolnp]; }; - mirt = derive2 { name="mirt"; version="1.28"; sha256="1ykki146wgdb0smdly0b2hqzvk7b31xmd1kgw69505mbm49yhzvh"; depends=[dcurver Deriv GPArotation lattice mgcv Rcpp RcppArmadillo vegan]; }; - mirtCAT = derive2 { name="mirtCAT"; version="1.7"; sha256="038jp680hn17q8hcz346j4i0p913h7gbkqfswn0ygf1kwgsz1mpa"; depends=[lattice lpSolve markdown mirt pbapply Rcpp RcppArmadillo shiny]; }; + mipfp = derive2 { name="mipfp"; version="3.2.1"; sha256="1gxazpg81vj5dywpb6jb29188jw28qil6pfygawa7znnjn3k5ca6"; depends=[cmm numDeriv Rsolnp]; }; + mirt = derive2 { name="mirt"; version="1.29"; sha256="0rmnzs39x4b6v5sb8v23cxnsndnck4mb9757987r8wdnhbdx0hkr"; depends=[dcurver Deriv GPArotation lattice mgcv Rcpp RcppArmadillo vegan]; }; + mirtCAT = derive2 { name="mirtCAT"; version="1.8"; sha256="1syv0j4gcdx5860kxshmr0m2d1klmxfi4bwcsc7lc5ss5kw63yi1"; depends=[lattice lpSolve markdown mirt pbapply Rcpp RcppArmadillo shiny]; }; misc3d = derive2 { name="misc3d"; version="0.8-4"; sha256="0qjzpw3h09qi2gfz52b7nhzd95p7yyxsd03fldc9wzzn6wi3vpkm"; depends=[]; }; miscF = derive2 { name="miscF"; version="0.1-4"; sha256="1kvkbvrmaqclwdfghkrsmnzb6xbi97icay2wwb7k5m34xhx4ha82"; depends=[MASS MCMCpack mvtnorm R2jags]; }; miscFuncs = derive2 { name="miscFuncs"; version="1.2-10"; sha256="1kqya581n76ff9avhj6xm6nwsbw7zlm4mwy0vyvdlqlf7c381qq0"; depends=[mvtnorm roxygen2]; }; @@ -8570,21 +8951,21 @@ in with self; { missRanger = derive2 { name="missRanger"; version="1.0.3"; sha256="00gcnpvvy65v6k5qjk6xavdis02l8s9a56vwi39kw0rw8yhkla73"; depends=[FNN ranger]; }; mistat = derive2 { name="mistat"; version="1.0-5"; sha256="1vyx918b7iv1wcnk23bnlxljwy0hglpdx5drhrs5qcd45f6jrghc"; depends=[]; }; mistral = derive2 { name="mistral"; version="2.1.0"; sha256="1cr79p8q82lpj9d0y6q24xmfkxmnlqv8ivkd0baj7fxfb1nb8sak"; depends=[DiceKriging doParallel e1071 emoa foreach ggplot2 iterators Matrix mvtnorm quadprog]; }; - mitml = derive2 { name="mitml"; version="0.3-5"; sha256="1s888r9y2ri39b48h1iypps6lddqkqv3g31l2sjmi2pvyccfpkwb"; depends=[haven jomo pan]; }; + mitml = derive2 { name="mitml"; version="0.3-6"; sha256="1pkqv4qazih3byws5z6629pp232n8ra56lip7502727b0b4bsndw"; depends=[haven jomo pan]; }; mitools = derive2 { name="mitools"; version="2.3"; sha256="0w76zcl8mfgd7d4njhh0k473hagf9ndcadnnjd35c94ym98jja33"; depends=[]; }; mix = derive2 { name="mix"; version="1.0-10"; sha256="0z16ddbh79kqxi64bl1h2sd8anpgc48n9d1nyr2zlln39nhv8w8g"; depends=[]; }; mixAK = derive2 { name="mixAK"; version="5.1"; sha256="0i9gp66d1mzskiif0bk0w88cinc923fsj4vi7pv0im2cwmxksiiq"; depends=[coda colorspace fastGHQuad lme4 mnormt]; }; mixEMM = derive2 { name="mixEMM"; version="1.0"; sha256="0344ay1avi37kvh5w9bknayx67yh7rflj6zhw68d2888v7cbghjy"; depends=[]; }; - mixKernel = derive2 { name="mixKernel"; version="0.1"; sha256="0p0m081ivpc22z3p8308z12fcdjnid86niwk4i97dvz12dr8v9ws"; depends=[corrplot ggplot2 LDRTools mixOmics phyloseq psych quadprog]; }; + mixKernel = derive2 { name="mixKernel"; version="0.2"; sha256="0jhgyipy4635inzm0lsbi8inlbiahyfffn2ccnhyil6kaw3ky2pr"; depends=[corrplot ggplot2 LDRTools Matrix mixOmics phyloseq psych quadprog vegan]; }; mixOmics = derive2 { name="mixOmics"; version="6.3.2"; sha256="1lqhrgsfdlv1ji965zf9ndg6ngylbmqahcslwirwd5vrjvlbzjb2"; depends=[corpcor dplyr ellipse ggplot2 gridExtra igraph lattice MASS matrixStats rARPACK RColorBrewer reshape2 rgl tidyr]; }; mixPHM = derive2 { name="mixPHM"; version="0.7-2"; sha256="1wvkdb9zj2j8dpppnyins05rg877zbydqsl3qaan62wznkknxcac"; depends=[lattice survival]; }; mixR = derive2 { name="mixR"; version="0.1.1"; sha256="1xd3v5rk59380zh7r6l5blmcy4gib9xp44j5dcrk6ivs6fgycsxh"; depends=[ggplot2 Rcpp]; }; mixRasch = derive2 { name="mixRasch"; version="1.1"; sha256="1r067pv7b54y1bz8p496wxv4by96dxfi2n1c99gziqf5ramx3qzp"; depends=[]; }; - mixcat = derive2 { name="mixcat"; version="1.0-3"; sha256="0xszngygd3yj61pvv6jrrb5j0sxgpxzhlic69xrd5mv5iyw0cmxd"; depends=[statmod]; }; + mixchar = derive2 { name="mixchar"; version="0.1.0"; sha256="1az2gggwipkzg86pvn9w2csgfgrpdc88kca51f5qcw0zk4wx5hlx"; depends=[minpack_lm nloptr tmvtnorm zoo]; }; mixdir = derive2 { name="mixdir"; version="0.1.0"; sha256="0kr82g7s9vp3i1vyqfpn30avdxg86xh0hgngbqmm5l2brd5sa4wx"; depends=[extraDistr Rcpp]; }; mixdist = derive2 { name="mixdist"; version="0.5-5"; sha256="1wchhysd33xz395hq4wgd3zv1qc92pbiqxqd7g2v6m1pb0j8ma9g"; depends=[]; }; mixedMem = derive2 { name="mixedMem"; version="1.1.0"; sha256="0j8w3qfhanyrkkxipdxfdajv15qba8r2rm06iiv3kywficzgkxgv"; depends=[BH gtools Rcpp RcppArmadillo]; }; - mixedsde = derive2 { name="mixedsde"; version="4.0"; sha256="1hryscff4i4ayqxv9imnx4g56497s1s95fzqv8wkwcpfcqi20bqf"; depends=[MASS moments plot3D sde]; }; + mixedsde = derive2 { name="mixedsde"; version="5.0"; sha256="0ss1ng4nx91gxj85wxxfyh9ljxsj3ag6lsj1a5d2815p9jzl7dsv"; depends=[MASS moments plot3D sde]; }; mixexp = derive2 { name="mixexp"; version="1.2.5"; sha256="0nbf10xhrr51rb1b2apcj4p3ci8xbi7flgz500ar3mxh8h8l74sq"; depends=[daewr gdata lattice]; }; mixlink = derive2 { name="mixlink"; version="0.1.5"; sha256="0ywgrcplhspc0x5fniw52xqz20y7j9mwgy4ky8lv3vii659mr52m"; depends=[mvtnorm numDeriv Rcpp RcppGSL]; }; mixlm = derive2 { name="mixlm"; version="1.2.3"; sha256="0i7nrn31yaicdpwfssnid1x8w51iv17lcl96zfr1pgrf97d7gkqd"; depends=[car leaps multcomp pls pracma]; }; @@ -8597,15 +8978,15 @@ in with self; { mixtools = derive2 { name="mixtools"; version="1.1.0"; sha256="13wdm0xs5bakhpa8ypg6lvhjaqkxyabwz4glxdwn0jwdvkcdhgsl"; depends=[MASS segmented survival]; }; mixtox = derive2 { name="mixtox"; version="1.3.2"; sha256="0mdnp1yrcxvan5l7jj91s41vq5y1kdnkhhinqrklmg4ph5f29dmq"; depends=[minpack_lm]; }; mixture = derive2 { name="mixture"; version="1.5"; sha256="1ahr8jw93xnd5hmy3h4sr209ql7gmkwbvnnfmiplbpc17czqgcn4"; depends=[]; }; - mize = derive2 { name="mize"; version="0.1.1"; sha256="18mnpwwbwlyx0ixsjqai28ahp4g0wncv8c5qwy17xq2zbhwlq3jh"; depends=[]; }; + mize = derive2 { name="mize"; version="0.2.0"; sha256="13l6f0i6k2y2cqad80zi35vqpkd0p8xl0hmf8djrsk1nmjqap1gc"; depends=[]; }; mizer = derive2 { name="mizer"; version="1.0"; sha256="0qsf3wd8ipql344i8brv1d7qbr9g5y0qhh00lxj9n8sgjg52x7a5"; depends=[deSolve ggplot2 plyr progress Rcpp reshape2]; }; mkde = derive2 { name="mkde"; version="0.1"; sha256="04v84arpnmjrkk88ffphnhkz32x7y0dypk75jfmbbgcgv59xlglv"; depends=[raster Rcpp sp]; }; - mkin = derive2 { name="mkin"; version="0.9.47.1"; sha256="1cz6f9122im594dvqdmdm9yjlnmwzrx2ka63dgj0zf1ysqzf0872"; depends=[deSolve FME inline minpack_lm R6 rootSolve]; }; + mkin = derive2 { name="mkin"; version="0.9.47.5"; sha256="1cnzvq3wbkyzxajwk8h7pxyabfw0dbiv6dwga337ssf643rq9a8v"; depends=[deSolve FME inline minpack_lm R6 rootSolve]; }; mknapsack = derive2 { name="mknapsack"; version="0.1.0"; sha256="1kzmx7d512681a4hjirfgcd7a8rvndb4da66p16gms5nnxzsby9c"; depends=[assertthat data_table lpSolve]; }; mkssd = derive2 { name="mkssd"; version="1.1"; sha256="1qqzy6fn6sc3lxahc19hzzf1hzxsyvxqi7npynw0vkknlrvh2ijp"; depends=[]; }; mlDNA = derive2 { name="mlDNA"; version="1.1"; sha256="0d9lydiwar98hin26slnym4svn0g1xmyn212vvzsx9lzlvs5a9k4"; depends=[e1071 igraph pROC randomForest ROCR rsgcc snowfall]; }; mlPhaser = derive2 { name="mlPhaser"; version="0.01"; sha256="1s2mqlnbcjdkx0ghvr2sw9rzggqa4jy2vzi9vbyqkh6795lgck6n"; depends=[]; }; - mlVAR = derive2 { name="mlVAR"; version="0.4"; sha256="08iaq6wq0ngd60nhmlj8c0x8r1fal1zfv2zpd6ll54szcvdbxahr"; depends=[abind arm clusterGeneration corpcor dplyr lme4 MplusAutomation mvtnorm plyr qgraph]; }; + mlVAR = derive2 { name="mlVAR"; version="0.4.1"; sha256="04ginifm625k7qy5s2s7rwqa5gwi8frrd2vs332jiw2sgpbi45ig"; depends=[abind arm clusterGeneration corpcor dplyr graphicalVAR lme4 MplusAutomation mvtnorm plyr qgraph]; }; mlapi = derive2 { name="mlapi"; version="0.1.0"; sha256="023vk5bp8cjcq88sapkl87kdxr92bay1dyxl6xirnyj699pyj51k"; depends=[Matrix R6]; }; mlbench = derive2 { name="mlbench"; version="2.1-1"; sha256="1rp035qxfgh5ail92zjh9jh57dj0b8babw3wsg29v8ricpal30bl"; depends=[]; }; mlbgameday = derive2 { name="mlbgameday"; version="0.1.2"; sha256="03mz88y29wkn3510p8kzhapx0gj0mkqf0bgcjc0jpph2r1020c9a"; depends=[DBI doParallel dplyr foreach iterators magrittr purrr stringr tidyr xml2]; }; @@ -8618,24 +8999,24 @@ in with self; { mlegp = derive2 { name="mlegp"; version="3.1.7"; sha256="1q0mxvr23qcxvf8k2cgs4m8yfp1gbkmprp964w8viy30japmx16l"; depends=[]; }; mleur = derive2 { name="mleur"; version="1.0-6"; sha256="0mddphq3b6y2jaafaa9y41842kcaqdl3dh7j4pva55q2vcjcclj7"; depends=[fGarch lattice stabledist urca]; }; mlf = derive2 { name="mlf"; version="1.2.1"; sha256="09ihnibpknpp26hdlbxyr99yz7z0n8qpsjs5aq3zngng0yh3wdn9"; depends=[]; }; + mlflow = derive2 { name="mlflow"; version="0.7.0"; sha256="1dx6g4656y6z90dmsfpb0l9wb1yf8g40m62x8fwny51ld3d3cfxm"; depends=[aws_s3 forge fs git2r httpuv httr jsonlite openssl packrat processx pryr purrr reticulate rlang swagger withr xml2 yaml]; }; mlgt = derive2 { name="mlgt"; version="0.16"; sha256="1nvdq6mvgr39ikkf73aggsb6pmbw132injj8fdkr8hgcmwm6lgd9"; depends=[seqinr]; }; mlica2 = derive2 { name="mlica2"; version="2.1"; sha256="0c3m1zd9x99n6lw12hfzmd59355z51xa8rhg1h7qwfn9p86r826f"; depends=[]; }; mljar = derive2 { name="mljar"; version="0.1.1"; sha256="1mw45aqjwklsnrfwf8656jf30miyrlxpz87z97nkv9i135yhwfx3"; depends=[httr jsonlite readr]; }; mlmRev = derive2 { name="mlmRev"; version="1.0-6"; sha256="0mvmahnbbp478xwldj4wlsjib4v4afhs07643gxgcqpi56zbd5h7"; depends=[lme4]; }; mlma = derive2 { name="mlma"; version="4.0-1"; sha256="0pk2h4m74r95dfkqzliixi6z1rwdfc6gbz8c3162y22m919f00vc"; depends=[car gplots lme4]; }; mlmc = derive2 { name="mlmc"; version="1.0.0"; sha256="01h7w0ajyg3bccynlpbi3yjpy089wczbfbajpg6yw5v4dppw7k7a"; depends=[ggplot2 Rcpp]; }; - mlmm_gwas = derive2 { name="mlmm.gwas"; version="1.0.3"; sha256="0k0q7l0dja6q5jl4p7fd16c95m83db8c7g34lnaymxll824ai1lq"; depends=[coxme Matrix multcomp multcompView sommer]; }; + mlmm_gwas = derive2 { name="mlmm.gwas"; version="1.0.4"; sha256="1m58fp0izp03filb9wzw8fjrgy383p20jpynvgmxngbfp8bvspy6"; depends=[coxme Matrix multcomp multcompView sommer]; }; mlmmm = derive2 { name="mlmmm"; version="0.3-1.2"; sha256="1m5ziiqs3ll1xjm1yf7x4sdc910jypn3kjnbadf95xxkvqmfrsqq"; depends=[]; }; mlogit = derive2 { name="mlogit"; version="0.3-0"; sha256="0frggwb1yzfs229ys60qc4acfnq2zwjr6a1zb4fv07s1zlwrvnf1"; depends=[Formula lmtest MASS maxLik statmod zoo]; }; mlogitBMA = derive2 { name="mlogitBMA"; version="0.1-6"; sha256="1wl8ljh6rr1wx7dxmd1rq5wjbpz3426z8dpg7pkf1x9wr94a2q25"; depends=[abind BMA maxLik]; }; - mlr = derive2 { name="mlr"; version="2.12.1"; sha256="0b68pgx55f19i3pnci1n87cq2a7kfs6s2248zs1vg4xl5sw9ifww"; depends=[backports BBmisc checkmate data_table ggplot2 parallelMap ParamHelpers stringi survival XML]; }; - mlrCPO = derive2 { name="mlrCPO"; version="0.3.4"; sha256="126kbfgcaqlvrpmz7v1l391x4v8sfzw7ccimz341im6n9ygp43rp"; depends=[backports BBmisc checkmate mlr ParamHelpers stringi]; }; + mlr = derive2 { name="mlr"; version="2.13"; sha256="07816gbswlv56qacf2byp5a5yg4hicx4kya49h9fmhfxmkkrnwp8"; depends=[backports BBmisc checkmate data_table ggplot2 parallelMap ParamHelpers stringi survival XML]; }; + mlrCPO = derive2 { name="mlrCPO"; version="0.3.4-1"; sha256="1kq8y24vvzxp1jbn52cddh0gq183pbfqs0gpi17my5xh892aszi9"; depends=[backports BBmisc checkmate mlr ParamHelpers stringi]; }; mlrMBO = derive2 { name="mlrMBO"; version="1.1.2"; sha256="1ziyiycgwr4vgilji8dkf1c0kyqjnbmqi3qj35q3si2xbnmcm14f"; depends=[backports BBmisc checkmate data_table lhs mlr parallelMap ParamHelpers smoof]; }; mlsjunkgen = derive2 { name="mlsjunkgen"; version="0.1.1"; sha256="109ag52x4y3rzx8yccilrnl24mz4ximzx6v4lrbak7dpiclqrw7a"; depends=[]; }; - mlt = derive2 { name="mlt"; version="1.0-2"; sha256="0yc1dij3q6nk15259mvl5bhnm9b70ix8nq5lniq40j1arh5v9nq0"; depends=[alabama basefun BB coneproj numDeriv sandwich survival variables]; }; - mlt_docreg = derive2 { name="mlt.docreg"; version="1.0-1"; sha256="140bi0kjz5m7amwdxm2mpqn04i5wb1yjviwv34f1qjpzi4walml3"; depends=[mlt numDeriv]; }; + mlt = derive2 { name="mlt"; version="1.0-3"; sha256="067j6gp5xh30ad46lp7x2n7kd8asbnchzlvsdgm8gq8gkd19icxx"; depends=[alabama basefun BB coneproj numDeriv sandwich survival variables]; }; + mlt_docreg = derive2 { name="mlt.docreg"; version="1.0-2"; sha256="1dk27iq7ix7j06m34c8wi9433f7kd36499x24bswy89y10lqqsn9"; depends=[mlt numDeriv]; }; mltools = derive2 { name="mltools"; version="0.3.5"; sha256="045v28w7vz1zjxim8vfc6ncvg2mavr1q332x0hzlqpfzrk7gz4vh"; depends=[data_table Matrix]; }; - mlvocab = derive2 { name="mlvocab"; version="0.0.1"; sha256="0lv9aqrwm00jdklig80yi5lxj87sh6ysg7qkg0kf1nv05lkvrpb0"; depends=[digest Matrix Rcpp sparsepp]; }; mlxR = derive2 { name="mlxR"; version="3.3.0"; sha256="0qbhmxmsyqfc2csk96qwizpjj7yk35r85rr5xaqkyr72mjn2m3gh"; depends=[ggplot2 Rcpp XML]; }; mma = derive2 { name="mma"; version="6.1-0"; sha256="1rrnm7szlaly8klqgi8wdh5qvfx4kx5bkl1q2y9y6zjpxmb4zvi6"; depends=[car doParallel foreach gbm gplots plotrix survival]; }; mmabig = derive2 { name="mmabig"; version="1.0-0"; sha256="1srrfk6dqqfc504w8rhrfag3lzsc55sw3ckkmgph6k8ss99zn285"; depends=[car glmnet gplots mma survival]; }; @@ -8651,7 +9032,7 @@ in with self; { mmm2 = derive2 { name="mmm2"; version="1.2"; sha256="1h9pn5s3jjs4bydrr1qysjb4hv7vs4h3m7mvi22ggs2dzyz3b298"; depends=[gee]; }; mmmgee = derive2 { name="mmmgee"; version="1.12"; sha256="083hv7g2cy2r9qkwc2fihglf4avsl1dsjyy74mj39gk1pss8mh6j"; depends=[Matrix mvtnorm]; }; mmod = derive2 { name="mmod"; version="1.3.3"; sha256="1dz6887mlqbagjj98wcabmxj9hvsz8pgsizy1fqkwjhhs44c62y4"; depends=[adegenet pegas]; }; - mmpf = derive2 { name="mmpf"; version="0.0.4"; sha256="1lskpnhqiimf7ch5xg5f0mpvhxy18a5w9daxpp4133vx1dydm4c2"; depends=[checkmate data_table]; }; + mmpf = derive2 { name="mmpf"; version="0.0.5"; sha256="1w1ll1l7yzwb1wmlrcfpgqyzni7yb20kxy422y867hx2ndxlfwpz"; depends=[checkmate data_table]; }; mmpp = derive2 { name="mmpp"; version="0.6"; sha256="16aypjf4i0ya3qgxqrrg8y0xbnq1pnqky1dpkgln5q494hphyg91"; depends=[]; }; mmppr = derive2 { name="mmppr"; version="0.1"; sha256="0fswkqcw0xkqd9gmqabb61i32zscp5jzfx0z43wq7mrlwynryylv"; depends=[expm reshape2]; }; mmtfa = derive2 { name="mmtfa"; version="0.3"; sha256="0qfszr6f10v27w1pfns78dyarznqryl4m1ppyqap7l8fc12sliky"; depends=[matrixStats mvnfast]; }; @@ -8660,10 +9041,10 @@ in with self; { mnlogit = derive2 { name="mnlogit"; version="1.2.5"; sha256="0vwragk71hisz7dy4h5i6zl9yp6wvzwlnfyw2kprnd94y02laq63"; depends=[Formula lmtest mlogit]; }; mnormpow = derive2 { name="mnormpow"; version="0.1.1"; sha256="0z53vwhkhkkr6zrjhd3yr14mb02vh7lr63frf0ivajndxiap0s9v"; depends=[]; }; mnormt = derive2 { name="mnormt"; version="1.5-5"; sha256="1b34xxrnf35khsx82mhvmk96sgfr2flyasaah7qkb2976pwxay7z"; depends=[]; }; - mnreadR = derive2 { name="mnreadR"; version="2.0.0"; sha256="0m8h4g43iwq2ri6y9xk68g2rrikxngqcpqy6jlva84gsxigbzbql"; depends=[dplyr ggplot2 nlme tibble tidyr]; }; + mnreadR = derive2 { name="mnreadR"; version="2.1.0"; sha256="1299jc72rr8c14kl5510jc5pj2l7l2xwi593a9zg853j4bmx3nim"; depends=[dplyr ggplot2 nlme tibble tidyr]; }; mobForest = derive2 { name="mobForest"; version="1.3.0"; sha256="0gzn3lyi9ph5dcrfbw4xs4rkf5ngf28abf1n8vap96fdhc6nmg88"; depends=[modeltools party sandwich strucchange zoo]; }; mobsim = derive2 { name="mobsim"; version="0.1.0"; sha256="077hw1162giwc90y5dvj9052i5hxdf2ii29m9q8ky028375dsd0f"; depends=[Rcpp sads vegan]; }; - mockery = derive2 { name="mockery"; version="0.4.1"; sha256="1h8976rlwykpqrh2p6x3bcyxdhlhcwsi1wvkdk08k6hynbw877cm"; depends=[testthat]; }; + mockery = derive2 { name="mockery"; version="0.4.1.1"; sha256="1vfmjcjjyw2v5y64hmpfib6v0f6ms4k5ycvc9pmj9l4nkzq2al6b"; depends=[testthat]; }; mockr = derive2 { name="mockr"; version="0.1"; sha256="0340v6189ivlzzriwk7yhf3v2k651x05fd1xrqfxxjgwhysaqj6z"; depends=[lazyeval]; }; mod09nrt = derive2 { name="mod09nrt"; version="0.14"; sha256="1wn1y33bj9r712l0f063j5gcl423anjzmvgfy0ddihcrbpz4l7a0"; depends=[]; }; modEvA = derive2 { name="modEvA"; version="1.3.2"; sha256="0p41fl0k780rx1vmq9laknz01ar6507sj8ss8kphrqkjnymsi2a0"; depends=[]; }; @@ -8678,39 +9059,41 @@ in with self; { modelObj = derive2 { name="modelObj"; version="3.0"; sha256="0wc67zsh26zyr7x9s229g2mppfk6g6z12j74zj2bdhk2m7i2x3zq"; depends=[]; }; modeldb = derive2 { name="modeldb"; version="0.1.0"; sha256="1pb9vnviz0sy9cz2jns34j7fwadi0j250smixr840hjjvvgxyzwf"; depends=[dplyr ggplot2 progress purrr readr rlang tibble tidyr]; }; modelfree = derive2 { name="modelfree"; version="1.1-1"; sha256="0ammka2wxx90z31zfzypw9dk5n118l0vxhykxbx6srfig2vdyn82"; depends=[PolynomF SparseM]; }; + modelgrid = derive2 { name="modelgrid"; version="1.1.0.0"; sha256="0ljqdr479rv0glpf5grmx23f9g6dmc62pps47wdr89ja0iv7abp9"; depends=[caret dplyr ggplot2 lattice magrittr purrr]; }; modelr = derive2 { name="modelr"; version="0.1.2"; sha256="09whg3q5xq6csbqwgwfwav09vda8vgady5j70sk52xcn232k363a"; depends=[broom dplyr magrittr purrr rlang tibble tidyr]; }; - modeltools = derive2 { name="modeltools"; version="0.2-21"; sha256="0ynds453xprxv0jqqzi3blnv5w6vrdww9pvd1sq4lrr5ar3k3cq7"; depends=[]; }; + modeltools = derive2 { name="modeltools"; version="0.2-22"; sha256="1s9lmkac3rl0nknf4wizfhg7ryq7c8yvvyc4z619238br27hhsi5"; depends=[]; }; modelwordcloud = derive2 { name="modelwordcloud"; version="0.1"; sha256="0ardib0h923i7jk8bgcq6pn2zazx9acf9sdggifsk46hdz8hvqnm"; depends=[]; }; - moderndive = derive2 { name="moderndive"; version="0.1.1"; sha256="11xxklaqizlx36nyx3nzj9xkszg99qsmjqmr59z235h4wkrw8xg3"; depends=[assertive broom dplyr formula_tools janitor knitr magrittr rlang stringr tibble]; }; + moderndive = derive2 { name="moderndive"; version="0.2.0"; sha256="165dll1bkjmd949mwy165hrz22ajbkn3ap5l8f8pqwksw78rsgqb"; depends=[assertive broom dplyr formula_tools infer janitor knitr magrittr rlang stringr tibble]; }; modes = derive2 { name="modes"; version="0.7.0"; sha256="185qjrmz2sj0l5931g4d3kx3jpgjn4rf4lln84h6g97prk1ykqmj"; depends=[]; }; modest = derive2 { name="modest"; version="0.3-1"; sha256="07rs014hdcabp2n0gg14pz2gmqgbw38vjv7a80vkzzh3601hxqws"; depends=[knitr rhandsontable shiny shinyBS]; }; modifiedmk = derive2 { name="modifiedmk"; version="1.1.0"; sha256="08nyn1rh28rs9wpz9jvi4pyrhrlh4qaklkx4za0h027lv3086ja3"; depends=[boot]; }; modiscloud = derive2 { name="modiscloud"; version="0.14"; sha256="0vwhfp50yb21xkanvzk983vk0laflv60kj1ybx3fydfljwqx0rwj"; depends=[date raster rgdal sfsmisc sp]; }; modmarg = derive2 { name="modmarg"; version="0.9.2"; sha256="1clyfvn5k87nyh5cj4b0yi2zkavwvnirhlirxkzi8m2qijdl9vgh"; depends=[]; }; + modopt_matlab = derive2 { name="modopt.matlab"; version="1.0-2"; sha256="0g5mswalv4y7p1k3n8a6qf7wb072m4bjq2ml2j83dz2j2bmvygsd"; depends=[ROI ROI_plugin_glpk ROI_plugin_quadprog]; }; moduleColor = derive2 { name="moduleColor"; version="1.08-3"; sha256="183l968l49b7jbmvsjjnmk1xd36cpjkp777c00gw1f73h6nb2na8"; depends=[dynamicTreeCut impute]; }; - modules = derive2 { name="modules"; version="0.6.0"; sha256="0nzypmx8p84dd7pdw7ilrjrc2nji5qzwylb9yn1zmr8wp5lzvidc"; depends=[stringr]; }; + modules = derive2 { name="modules"; version="0.7.0"; sha256="0ww2abbrd4s6qf8hfhpwg92gpyvbsrwjf6l0837x0705d81cmgw3"; depends=[stringr]; }; modygliani = derive2 { name="modygliani"; version="1.0"; sha256="01g96cdm4hgbsh6xsdfjg7vp7zb138sxwgv0msrlm27a6p4fcnlx"; depends=[]; }; moezipfR = derive2 { name="moezipfR"; version="1.0.2"; sha256="0sfl1c7cvm1milcglcvz9lyvgricsdm7shx0jxyn50y7xz0padww"; depends=[tolerance VGAM]; }; mogavs = derive2 { name="mogavs"; version="1.1.0"; sha256="0lhmwdv991bv7j8k066jr7ii94w60ydjpf5pzmv8jlblf3w2pr02"; depends=[cvTools]; }; mokken = derive2 { name="mokken"; version="2.8.11"; sha256="1dypdf5gdz0hr3izafzfknyqx2vbr1z77c4c7vqdygv2wzhwy5i1"; depends=[poLCA]; }; moko = derive2 { name="moko"; version="1.0.1"; sha256="1d1gyv44z8k196hfh8a9iccmlrwb42bj1xzabs07h306gpi9m73d"; depends=[DiceKriging DiceOptim emoa GenSA GPareto mco]; }; - molaR = derive2 { name="molaR"; version="4.3"; sha256="1bzk7k6d1zbi0fhf9xwdg5mv7dcgajjbb6wxafx4nc2fjxhlldzi"; depends=[alphahull rgl Rvcg]; }; + molaR = derive2 { name="molaR"; version="4.4"; sha256="0prd2avg3aj4y8zi7yd2sgcary8igqxrjcp0igail84kpnal53zq"; depends=[alphahull rgl Rvcg]; }; mombf = derive2 { name="mombf"; version="2.1.2"; sha256="1lbg91ih8djxv8brwzwpxwzpbnhl7p3rj585kagykknknq5r6csj"; depends=[mclust mgcv mvtnorm ncvreg survival]; }; momentchi2 = derive2 { name="momentchi2"; version="0.1.5"; sha256="1fv0jmwws4mkl9dsaybfpj29ncvqx2idsijgwz2qjblcg309a6k9"; depends=[]; }; moments = derive2 { name="moments"; version="0.14"; sha256="0f9y58w1hxcz4bqivirx25ywlmc80gbi6dfx5cnhkpdg1pk82fra"; depends=[]; }; momentuHMM = derive2 { name="momentuHMM"; version="1.4.2"; sha256="02ia80h78msgb4c474h47cbd8n0j3bfrjcq4wl2937licdzfl43s"; depends=[argosfilter boot Brobdingnag car CircStats conicfit crawl doParallel dplyr foreach geosphere ggmap ggplot2 gstat LaplacesDemon magrittr MASS mitools moveHMM mvtnorm nleqslv numDeriv prodlim qdapRegex raster Rcpp RcppArmadillo sp survival]; }; momr = derive2 { name="momr"; version="1.1"; sha256="091vzaw8dm29q89lg2iys25rbg2aslgdn9sk06x038nngxdrn95r"; depends=[gplots Hmisc nortest]; }; mondate = derive2 { name="mondate"; version="0.10.01.02"; sha256="18v15y7fkll47q6kg7xzmj5777bz0yw4c7qfiw2bjp0f3b11qrd2"; depends=[]; }; - mongolite = derive2 { name="mongolite"; version="1.6"; sha256="0wam3sbf5p7d5ikvmf0z8cghk2lrw2c3qyh9pbffm62vdbq7wx86"; depends=[jsonlite mime openssl]; }; + mongolite = derive2 { name="mongolite"; version="2.0"; sha256="1icbxsnrah9dxcn1rf678853g8whdj41pj3zwv8kl61vjrg8r6rn"; depends=[jsonlite mime openssl]; }; monitoR = derive2 { name="monitoR"; version="1.0.7"; sha256="1h1g0m1j13mz37xxwck4s7a0bfqvi0nrzfw60j7bkzaah8zxcc9n"; depends=[tuneR]; }; monkeylearn = derive2 { name="monkeylearn"; version="0.2.0"; sha256="18lpfs64h0hy4vkdjlnmxwgagvf54kn8a1c866vv00ckyp85fvn2"; depends=[cowsay digest dplyr httr jsonlite magrittr purrr ratelimitr tibble tidyr]; }; monmlp = derive2 { name="monmlp"; version="1.1.5"; sha256="19cx60csm8mnf6ksg64vlhi8wi1c7bmv9l55y9zmaljblr0kmzxf"; depends=[optimx]; }; monographaR = derive2 { name="monographaR"; version="1.2.0"; sha256="0sis2kw07ifq54w6p56zspmlnvxvq6ajb0sdvc9fk480sfxg9806"; depends=[circular maptools png raster rmarkdown sp]; }; - monomvn = derive2 { name="monomvn"; version="1.9-7"; sha256="1bz967sl6ji84x9v0fypjn75d39naaqgvw31n9lgcd5lyj39hbsk"; depends=[lars MASS mvtnorm pls quadprog]; }; + monomvn = derive2 { name="monomvn"; version="1.9-8"; sha256="1bsn3i0j4mf39cxcyqwb1fgafdyv6bmvsh803d7692h93zc3llqj"; depends=[lars MASS mvtnorm pls quadprog]; }; monoreg = derive2 { name="monoreg"; version="1.2"; sha256="16n622j1j998a5fhn1c1qbzk5bfa5h09d95ry89gsd00p40hqg0a"; depends=[]; }; monotonicity = derive2 { name="monotonicity"; version="1.1"; sha256="06irf6jlmhmj70c45ilf66yy2k81i3rg1qgw9ch08mj1j8ahyx7x"; depends=[lmtest MASS sandwich]; }; monreg = derive2 { name="monreg"; version="0.1.3"; sha256="08rcg2xffa61cgqy8g98b0f7jqhd4yp8nx6g4bq3g722aqx4nfg3"; depends=[]; }; - moonBook = derive2 { name="moonBook"; version="0.1.8"; sha256="1gdzpjc16l2alvf968011njgl8i7fhi2l5v97b47dh4wlnziq68x"; depends=[nortest survival]; }; + moonBook = derive2 { name="moonBook"; version="0.2.3"; sha256="0hys56mwbm776ff7dibi8wzyf69qiais9rs1jazv79lk6h56s9s6"; depends=[magrittr nortest purrr sjmisc stringr survival]; }; moonsun = derive2 { name="moonsun"; version="0.1.3"; sha256="1y8mwxmcy4iz444c2fayyi4i0jk1k561dp6cbjg2b3lmdml0whmi"; depends=[]; }; mopa = derive2 { name="mopa"; version="1.0.1"; sha256="1v876al1afli002v44b4j2acb6n66f0hzz4bmcl60jyny43d1n0c"; depends=[abind dismo e1071 earth gtools lattice PresenceAbsence randomForest ranger raster rpart sampling sp spam spatstat splancs tree]; }; mopsocd = derive2 { name="mopsocd"; version="0.5.1"; sha256="10hssnm1afqmxa9kw6ifqnz3p3yyjrmxgi98zlj31a5g4nis8wb1"; depends=[]; }; @@ -8718,7 +9101,7 @@ in with self; { morpheus = derive2 { name="morpheus"; version="0.2-0"; sha256="07gk05qpabbg96svgnp2m9sw3fxsh2mgfwyda423c03yhxn1pnsm"; depends=[jointDiag MASS pracma]; }; morse = derive2 { name="morse"; version="3.1.1"; sha256="0j0h8jx3mx20dfdzzkn48amq5fc6mdfkb06fznqbyxrahdgwj5wg"; depends=[coda dplyr epitools ggplot2 gridExtra magrittr reshape2 rjags tibble tidyr zoo]; }; mortAAR = derive2 { name="mortAAR"; version="1.0.1"; sha256="1dgxx5sh0nskzbigr8yq389lsnalp45d6m92q6g07jpqm7nzbazd"; depends=[magrittr Rdpack reshape2]; }; - mosaic = derive2 { name="mosaic"; version="1.3.0"; sha256="1iaiddg81b49296jch45m9hlybv6iia5vkl2s6pkzjp2ii5yvf8k"; depends=[broom dplyr ggdendro ggformula ggplot2 glue gridExtra lattice latticeExtra lazyeval MASS Matrix mosaicCore mosaicData readr tidyr]; }; + mosaic = derive2 { name="mosaic"; version="1.4.0"; sha256="10jbrg8kli00kfgbh2f67bymm5cnlancc9dplb1j7fl552yjddn2"; depends=[broom dplyr ggdendro ggformula ggplot2 ggrepel glue gridExtra lattice latticeExtra lazyeval MASS Matrix mosaicCore mosaicData readr tidyr]; }; mosaicCalc = derive2 { name="mosaicCalc"; version="0.5.0"; sha256="05s14rmgi15xcz50hcz7l26l95yx9g4i3kihzh0laz8bpi443i39"; depends=[MASS mosaic mosaicCore]; }; mosaicCore = derive2 { name="mosaicCore"; version="0.6.0"; sha256="1klw97h6lchw1cpcl8s637ikcl428cckmjq0czi7mibh9q9mw72z"; depends=[dplyr lazyeval MASS rlang tidyr]; }; mosaicData = derive2 { name="mosaicData"; version="0.17.0"; sha256="04z0mdm52mykqsxsinhmsihn181zf6cw321gayk2rjp7lj7mwdq9"; depends=[]; }; @@ -8728,16 +9111,17 @@ in with self; { moult = derive2 { name="moult"; version="2.1.0"; sha256="0k0969fwy648x25xw42w5ncimyw2cbq305rzf4m77p3pf0k50m9b"; depends=[Formula Matrix]; }; mountainplot = derive2 { name="mountainplot"; version="1.2"; sha256="1bbgkps1yhfa0lmapqkhhl5mc63p0gzszxw2g910dbi1cjc0pphx"; depends=[lattice]; }; mousetrack = derive2 { name="mousetrack"; version="1.0.0"; sha256="0lf0xh0c3xl27nh5w8wwyrm2jfzfajm2f73xjdgf746dp365qc8n"; depends=[pracma]; }; - mousetrap = derive2 { name="mousetrap"; version="3.1.0"; sha256="1r1cpfn6bcgk66lw0la6r3bsv62yhp2m3jkwn0g8rbwrhp9jyl6p"; depends=[cstab diptest dplyr fastcluster fields ggplot2 magrittr pracma psych RColorBrewer Rcpp scales tidyr]; }; - movMF = derive2 { name="movMF"; version="0.2-2"; sha256="0kk3b16vlr6nbqn9fzgk5pb4nyy9w9b5x7khyvn34b9r0pnqmmds"; depends=[clue skmeans slam]; }; - move = derive2 { name="move"; version="3.0.2"; sha256="0pi59k2kq1z92qgsbbqn1cjx0rbkjzjhaskk76wv95s3078k062d"; depends=[geosphere httr raster Rcpp rgdal sp xml2]; }; + mousetrap = derive2 { name="mousetrap"; version="3.1.1"; sha256="150760bpalssalh2grh4jfpw3vsbysnnfvnvy2xk1yrcn3234ynj"; depends=[cstab diptest dplyr fastcluster fields ggplot2 magrittr pracma psych RColorBrewer Rcpp scales tidyr]; }; + movMF = derive2 { name="movMF"; version="0.2-4"; sha256="0j5gp1l374479lsijw1hz00pxs09zzh7hapljv80lsvr24vfscpa"; depends=[clue skmeans slam]; }; + move = derive2 { name="move"; version="3.1.0"; sha256="0f5h5apwhp2z4ya8mkiflqfp46kmhfdr4zssi3rpkyl615d3dz9z"; depends=[geosphere httr memoise raster Rcpp rgdal sp xml2]; }; moveHMM = derive2 { name="moveHMM"; version="1.6"; sha256="1wz8yg87rxkq70hnahv1jd027938vl9g4wr9zvnq24vwc7hzdafz"; depends=[boot CircStats geosphere ggmap ggplot2 MASS numDeriv Rcpp RcppArmadillo sp]; }; - moveVis = derive2 { name="moveVis"; version="0.9.6"; sha256="15w11zdi2amzvq7xgz5wsf9136s127inc44x8cl3ra7jy2sbgpiy"; depends=[dismo geosphere ggplot2 gridExtra lubridate maptools move pbapply plyr raster rasterVis RCurl RStoolbox simecol sp zoo]; }; + moveVis = derive2 { name="moveVis"; version="0.9.8"; sha256="0dvspbivmw7h9safhwl5cm435617ir9xig07vng57lmiwkjlfm3v"; depends=[dismo geosphere ggplot2 gridExtra lubridate maptools move pbapply plyr raster rasterVis RStoolbox simecol sp zoo]; }; moveWindSpeed = derive2 { name="moveWindSpeed"; version="0.2.1"; sha256="020bl3i0i393dfknix03k8y70fjsf0lbw0mqrnhwsvz8kwrw3hi1"; depends=[move Rcpp]; }; + movecost = derive2 { name="movecost"; version="0.1"; sha256="0h1xc5985r696lvwqncxd6blvzxzrgsw27wcw8cllg92yfzjnwks"; depends=[gdistance raster rgdal rgeos sp]; }; mozzie = derive2 { name="mozzie"; version="0.1.0"; sha256="09dwrv4r0hi19gzi1vpif3q4wlbny9h22430g1hhv0wkqs86mhmw"; depends=[]; }; mp = derive2 { name="mp"; version="0.4.1"; sha256="0awvwqwb25q47j14b450k1k5mh2yzwhn7gizjv5j7lyiamk30iwq"; depends=[Rcpp RcppArmadillo]; }; mpa = derive2 { name="mpa"; version="0.7.3"; sha256="0mhnsbgr77fkn957zfiw8skyvgd084rja1y4wk5zf08q5xjs2zvn"; depends=[network]; }; - mpath = derive2 { name="mpath"; version="0.3-4"; sha256="0qn2nqravnfjjr76p2049z24cwfzy4av8xr2rvpgkan14jcm6xra"; depends=[bst doParallel foreach glmnet MASS numDeriv pscl]; }; + mpath = derive2 { name="mpath"; version="0.3-5"; sha256="1yv4pl6ph3d5cfrg1li5capcsvl3h321s0bvzl6mkcn0vnm23jdm"; depends=[bst doParallel foreach glmnet MASS numDeriv pscl]; }; mpbart = derive2 { name="mpbart"; version="0.2"; sha256="1145n0lxmm0kjm2lc358d79hqws48crj17pjvmchl1pbfd7zi4r8"; depends=[bayesm cvTools mlbench mlogit]; }; mpcv = derive2 { name="mpcv"; version="1.1"; sha256="0vwycspiw9saj811f6alkbijivy7szpahf35bxn2rpn2bdhbn21i"; depends=[lpSolve]; }; mpe = derive2 { name="mpe"; version="1.0"; sha256="17bgdbg1zrf78djd3mwycidwibxvsis7pwkrcynvghcc8l2zfci9"; depends=[mvtnorm]; }; @@ -8752,15 +9136,15 @@ in with self; { mpt = derive2 { name="mpt"; version="0.5-4"; sha256="01akz72z6z5ybzika120v4v6ah13hfynh98rzbmqgbchijxbbkz6"; depends=[]; }; mptools = derive2 { name="mptools"; version="1.0.1"; sha256="1g4fbfwxv9hir0jn22nh9854blgkh0b5jan3lv0888izj4isa1hc"; depends=[animation lattice latticeExtra raster rasterVis sp viridis zoo]; }; mr_raps = derive2 { name="mr.raps"; version="0.2"; sha256="069vyvsdgc5m7n2fd0h7jrllz789zvsxka7h5wiy36dc7lagd6f8"; depends=[nortest]; }; - mrMLM = derive2 { name="mrMLM"; version="3.0"; sha256="174d12dxrsndd8hkc4ivfa5wd7ixh3vkkvd1br5zm5rwxbq3c71l"; depends=[coin data_table doParallel foreach ggplot2 lars MASS ncvreg openxlsx qqman sampling stringr]; }; - mrMLM_GUI = derive2 { name="mrMLM.GUI"; version="3.1"; sha256="17rqky58im1aax29fi3lc6i7kpy3n35ysdhjz9dgmykzhx41xmn2"; depends=[coin data_table doParallel foreach ggplot2 lars MASS mrMLM ncvreg openxlsx qqman sampling shiny shinyjs stringr]; }; + mrMLM = derive2 { name="mrMLM"; version="3.1"; sha256="0mmnqgirbihq25fcy7bqs6qsw9dz6v1mzlm5ccs6pfpi852460c9"; depends=[bigmemory coin data_table doParallel foreach ggplot2 lars MASS ncvreg openxlsx qqman sampling stringr]; }; + mrMLM_GUI = derive2 { name="mrMLM.GUI"; version="3.2"; sha256="0xhbkvq9bd0spnpd8acnmf3spsi1kz43wf2na5b122iv7ppwl3ix"; depends=[bigmemory coin data_table doParallel foreach ggplot2 lars MASS mrMLM ncvreg openxlsx qqman sampling shiny shinyjs stringr]; }; mra = derive2 { name="mra"; version="2.16.11"; sha256="0268msdy4cs2ifpagmwiabi6aav54ckn214ai18aqv2h97hmixw0"; depends=[]; }; mratios = derive2 { name="mratios"; version="1.4.0"; sha256="0pjcwqx3zykpwyykwgqziwignd41sjm2s1blyjwc1lhymis4ldzq"; depends=[mvtnorm]; }; mrbsizeR = derive2 { name="mrbsizeR"; version="1.1.1"; sha256="0a69yyxxf4p84c2sx9kkaxgpfyck88cn0ajlnm64arrr9r99iiir"; depends=[fields maps Rcpp]; }; mrds = derive2 { name="mrds"; version="2.2.0"; sha256="08m5a61rpbw5pv0v0yspihkzihcxazsh6w5kmfvg68s4akjwcnqi"; depends=[mgcv numDeriv optimx Rsolnp]; }; mreg = derive2 { name="mreg"; version="1.1"; sha256="06la0yy2yys161jhlzlcm5lcv0664wm6sa8gjdnpd1s1nx52jkqf"; depends=[]; }; mregions = derive2 { name="mregions"; version="0.1.6"; sha256="0ix77hqcllhcpldchlnvciiflm6ysylynnnqvczpf8vx7gwa3lrk"; depends=[data_table httr jsonlite rappdirs sp tibble wellknown xml2]; }; - mrfDepth = derive2 { name="mrfDepth"; version="1.0.7"; sha256="1v0d1vm7jihg88xd4hwi5j940r5kh74c3nidh6hyvajqq97nidjq"; depends=[abind geometry ggplot2 matrixStats Rcpp RcppArmadillo RcppEigen reshape2]; }; + mrfDepth = derive2 { name="mrfDepth"; version="1.0.10"; sha256="138nsjcxrs3ihzscaw0cv15hkr0xnrjnjlyyf9igpcpg76d5m1bb"; depends=[abind geometry ggplot2 matrixStats Rcpp RcppArmadillo RcppEigen reshape2]; }; mrgsolve = derive2 { name="mrgsolve"; version="0.8.12"; sha256="04k7mj64gqwnvwsshfn4l3iiqfbsy92qil14ysq4ncjj2h40lgkj"; depends=[BH dplyr magrittr Rcpp RcppArmadillo rlang tibble]; }; mri = derive2 { name="mri"; version="0.1.1"; sha256="07lqr9fv0nqd626jpqa6x1qxf85r1j4r5brv760dll1p2kl060gw"; depends=[]; }; mritc = derive2 { name="mritc"; version="0.5-1"; sha256="12sfyw5b1lryczl92xvyvhl37qfx3ybg4y9awsl0b7f51zi0lzy3"; depends=[lattice misc3d oro_nifti]; }; @@ -8774,16 +9158,16 @@ in with self; { msap = derive2 { name="msap"; version="1.1.8"; sha256="0z5lm782jjb9w1h5vgz8bmxjdcrq9zb3xp1w5cb479jjc7krlgg3"; depends=[ade4 ape]; }; mschart = derive2 { name="mschart"; version="0.2.3"; sha256="0lq2hhbwy3hycbvzhrhny7jk5cc4iq89a4mff5q2jjfff13vmm6g"; depends=[cellranger data_table htmltools officer R6 writexl xml2]; }; mscstexta4r = derive2 { name="mscstexta4r"; version="0.1.2"; sha256="1hjcasmn33xav2mw085lcndv0432l6sz327aikf63491wj1sj7mw"; depends=[dplyr httr jsonlite pander stringi]; }; - mscstts = derive2 { name="mscstts"; version="0.2.2"; sha256="1aa8pvg3immcrpr7b6q1lf4nm8gvq9316s28jvzpp2az5hvc1w00"; depends=[httr jsonlite]; }; + mscstts = derive2 { name="mscstts"; version="0.3.0"; sha256="1fl3s5hhqkh7paaafm2dy4066g3p3rqcjmbxlsq4v60l3x448p5p"; depends=[httr jsonlite]; }; mscsweblm4r = derive2 { name="mscsweblm4r"; version="0.1.2"; sha256="031s00wpr9zfjpii56m67q1phn05vqlhb8cfzhyf6fbrxvpb8k7n"; depends=[httr jsonlite pander]; }; msda = derive2 { name="msda"; version="1.0.2"; sha256="05khpa5qasnngn6yvk87gv5262plqpw4knb6hzgy52w401k0y80r"; depends=[MASS Matrix]; }; msde = derive2 { name="msde"; version="1.0.3"; sha256="18l5ca4s1ryyb9i0zsb03klm53f25klwyg171dqkn5z4bqwznp2m"; depends=[Rcpp RcppProgress]; }; mseapca = derive2 { name="mseapca"; version="1.0"; sha256="115njdk8cv55zxd38hq9qaca686ykckni0f3xl8w3bn32gb5g9a7"; depends=[XML]; }; + msgl = derive2 { name="msgl"; version="2.3.7"; sha256="18mcn2b7bk6z85yfmpgv8ics3fr2vbafpkn8fcnsc2amklpaplcd"; depends=[BH Matrix Rcpp RcppArmadillo RcppProgress sglOptim]; }; msgpack = derive2 { name="msgpack"; version="1.0"; sha256="1j1nnca9nm3l1r4wjjlb15zr8p6zw1lcgyj4383ndy156bbh1f5a"; depends=[]; }; msgpackR = derive2 { name="msgpackR"; version="1.1"; sha256="0a6vm4q1zfy8wlvhl9wfy09ig1iag9fvjasz5w9bll7idky4ldx5"; depends=[]; }; msgps = derive2 { name="msgps"; version="1.3"; sha256="0nvxy9a41z5d111gqr1gh521imm795l1li70g1mzrag1gpg810c5"; depends=[]; }; - msgtools = derive2 { name="msgtools"; version="0.2.7"; sha256="1lk4r9gdhlfarl5z6a48aih682q7dvwa6lf31119lljpa5gmi92y"; depends=[devtools digest hunspell poio tibble]; }; - msigdbr = derive2 { name="msigdbr"; version="6.1.1"; sha256="0d8jxkfnlybs17s0qfxr1qcg6r4pp4q6c3srmm2r8zp7ln0qkj8j"; depends=[dplyr magrittr rlang tibble]; }; + msigdbr = derive2 { name="msigdbr"; version="6.2.1"; sha256="1264j1hs74kq7hyh68vfynadfi6mdpq46qm1hnwzkzzhmbzpb9cg"; depends=[dplyr magrittr rlang tibble]; }; msir = derive2 { name="msir"; version="1.3.1"; sha256="1ipzgdffsqly3dp91pw7yp3h5cwn08l9qsj7cdmrykd42jc98950"; depends=[mclust rgl]; }; msltrend = derive2 { name="msltrend"; version="1.0"; sha256="1rwy77ijf3hzq2zp47cijwvqcq34rdlfxwhrd9l56bvmlmzr1dqx"; depends=[changepoint forecast plyr Rssa tseries zoo]; }; msm = derive2 { name="msm"; version="1.6.6"; sha256="06m7fflb6lgjfnj9v4wjc63x2as8jvc24qmz6jvgm9fw7hnm24px"; depends=[expm mvtnorm survival]; }; @@ -8791,21 +9175,21 @@ in with self; { msme = derive2 { name="msme"; version="0.5.3"; sha256="0mq57zdas1s87nblnvbif9lisgahfhvmabglvp9imr1mvpwybpbh"; depends=[lattice MASS]; }; msmtools = derive2 { name="msmtools"; version="1.3"; sha256="0p7xpj78cjc1s015ma7vc38kqiy6wvpyixrdinx4ngig1pqfrq4p"; depends=[data_table msm survival]; }; msos = derive2 { name="msos"; version="1.1.0"; sha256="1dlqmjz5f8h71334kzdjbzvkn0dhysp7fb18g45qqs79cqpf1vzf"; depends=[mclust tree]; }; - msr = derive2 { name="msr"; version="0.4.4"; sha256="1r7kzicyi380xylw4vl88918gqmvs875f3rssx57yg28swb93sv0"; depends=[colorspace e1071 glmnet RColorBrewer rgl]; }; mssqlR = derive2 { name="mssqlR"; version="1.0.0"; sha256="0qdnm7cx9cg14vfcnkmcjqr1jpxsw8xlrbnxldvzz44mzv2n878l"; depends=[magrittr RODBC]; }; mstR = derive2 { name="mstR"; version="1.2"; sha256="0v8cv9pswkvw0lva6jx5vavsb20dawgq83gn4rgydyhvigcl5szd"; depends=[]; }; mstate = derive2 { name="mstate"; version="0.2.11"; sha256="13kw1n1p2f1f0k5hkcc4732wlhiy3csx8nx2ajrgw06svzksgh3y"; depends=[RColorBrewer survival]; }; mstherm = derive2 { name="mstherm"; version="0.4.7"; sha256="04jrp0w17svwmrvx356jmh04npbwhk9nvfy3r39vqr82yrvn6jip"; depends=[doParallel foreach nls2 plotrix RColorBrewer]; }; + mstrio = derive2 { name="mstrio"; version="10.11.1"; sha256="1k407b75kfvqlvlr9wcklf81b2cby3yi6jdi5ka661n5rybcs4nn"; depends=[httr jsonlite openssl]; }; msu = derive2 { name="msu"; version="0.0.1"; sha256="1vhh9725dbywmzihnmsq1jircpn91r8227j2f76fvma9rwss90p7"; depends=[entropy]; }; mtconnectR = derive2 { name="mtconnectR"; version="1.1.0"; sha256="068rp4n2afl9qgqrnp0a4lmnq7mq9wrc2yi361bfvib96gzg1fdw"; depends=[data_table dplyr dtw ggplot2 magrittr plyr proxy stringr tidyr XML]; }; mthapower = derive2 { name="mthapower"; version="0.1.0"; sha256="17svh0q9a982a390fgwgvrc2kygxxgyacb3j6gcksbikjrvkcfpw"; depends=[]; }; mtk = derive2 { name="mtk"; version="1.0"; sha256="0vq2xlxf86l92fl91qm8m4yfjyz1h8szmwxiics7sc9f0as0dkmy"; depends=[lhs rgl sensitivity stringr XML]; }; mtsdi = derive2 { name="mtsdi"; version="0.3.5"; sha256="0j4hl690n8x7zfpygw5qv0m0jyl8dnz1d3r4314w06h7c578n2kp"; depends=[gam]; }; - muHVT = derive2 { name="muHVT"; version="0.1.0"; sha256="1lkqas8ghnkgdnnhjmm1aivgabnqgpd3hfk8i3z7bajvi201qvx4"; depends=[conf_design deldir Hmisc MASS plyr sp splancs]; }; + muHVT = derive2 { name="muHVT"; version="0.2.1"; sha256="0qndbg9m3267s8h7gphcm4rkchfgkyzd1301wr6iajv0shrc98rv"; depends=[conf_design deldir dplyr ggplot2 Hmisc magrittr MASS purrr sp splancs]; }; muRL = derive2 { name="muRL"; version="0.1-11"; sha256="1pyspp1wpd80hcla1zwnl3misqggfk0ls54akwnx5aa617bibzz8"; depends=[maps stringr]; }; muStat = derive2 { name="muStat"; version="1.7.0"; sha256="18727xj9i9hcnpdfnl1b9wd6cp7wl1g74byqpda2gsrcardl57wz"; depends=[]; }; muckrock = derive2 { name="muckrock"; version="0.1.0"; sha256="16lm1iiaaws7clby7qgblqdiznw6abjjgvsxlfpza7l2xdvplxpg"; depends=[]; }; - mudata2 = derive2 { name="mudata2"; version="1.0.2"; sha256="14jd0fwc11a5640p0vr5dgfw7f1h7473ybqhalg20n7519jybfcb"; depends=[dplyr ggplot2 jsonlite lubridate magrittr readr rlang stringr tibble tidyr tidyselect]; }; + mudata2 = derive2 { name="mudata2"; version="1.0.3"; sha256="14nzi90gglq2dzwdq2bkpnwiz5fdfsf987ailii0c77xkd6j98jm"; depends=[dplyr ggplot2 jsonlite lubridate magrittr readr rlang stringr tibble tidyr tidyselect]; }; mudfold = derive2 { name="mudfold"; version="1.1.0"; sha256="0mp25lad79dx2101srarx26my172jbkd6a0bzr87hjdgqr1pys5b"; depends=[ggplot2 gtools reshape2 yesno zoo]; }; mueRelativeRisk = derive2 { name="mueRelativeRisk"; version="0.1.1"; sha256="16yclfmgxc32pv00vyb9fjdh4syax8ynizr8a29haiq22q5fqclh"; depends=[]; }; muhaz = derive2 { name="muhaz"; version="1.2.6"; sha256="1b7gzygbb5qss0sf9kdwp7rnj8iz58yq9267n9ffqsl9gwiwa1b7"; depends=[survival]; }; @@ -8824,14 +9208,15 @@ in with self; { multiROC = derive2 { name="multiROC"; version="1.1.1"; sha256="15ydbxpkdyvsc55di13jvwh9p6dzxc1yj93w1cwsd8jp2y10wsd3"; depends=[boot magrittr zoo]; }; multiband = derive2 { name="multiband"; version="0.1.0"; sha256="1f4gmy0yf9zid7kl05zncvvig6hs4nl1h9wkrkc24rxx9risw9k9"; depends=[]; }; multibiplotGUI = derive2 { name="multibiplotGUI"; version="1.0"; sha256="0ig7r4p8mq594cjwclbqwjk8saqkvjqjbbnnxj1hc1sdj7qdlcpf"; depends=[cluster dendroextras Matrix rgl shapes tcltk2 tkrplot]; }; - multicastR = derive2 { name="multicastR"; version="1.0.0"; sha256="0gs5pbnf9jr7l1hi6dq54a2isx43gdvbxx0p354r060gddj2xwqd"; depends=[data_table]; }; + multicastR = derive2 { name="multicastR"; version="1.0.1"; sha256="1sf5mn5hgz34ildga00462j92cr6v19132ns0sf9klwcrir8fqfb"; depends=[data_table stringi xml2]; }; multichull = derive2 { name="multichull"; version="1.0.0"; sha256="1gc7kxxlbanc6rmmbf6h85jf7kj0a78h23m5vwwqqliv018qsv2n"; depends=[igraph plotly shiny shinythemes]; }; multicmp = derive2 { name="multicmp"; version="1.1"; sha256="0mz7ksc5h6dy95l3kbsamm191372blhlrj573krc57bj93lmp1a5"; depends=[numDeriv]; }; + multicolor = derive2 { name="multicolor"; version="0.1.1"; sha256="1n7mxjkpd54y41lr3kwn3gwlka9p812jgazhlm9m6s9bc34sw3y9"; depends=[cowsay crayon dplyr glue magrittr purrr stringr tibble tidyr]; }; multicon = derive2 { name="multicon"; version="1.6"; sha256="16glkgnm4vlpxkhf1xw1gl1q10yavx9479i21v29lldag35z8pqx"; depends=[abind foreach mvtnorm psych sciplot]; }; multicool = derive2 { name="multicool"; version="0.1-10"; sha256="1ybg9piya9psqg42w9i3zsnavbxhkfklfwl7cb420i5nkq6wpc2v"; depends=[Rcpp]; }; - multifluo = derive2 { name="multifluo"; version="1.0"; sha256="1blmr2cdbdwfyivvla0nmv2n44m168f3d11g5i7vydh8fl17l8vr"; depends=[ellipse imager]; }; + multifluo = derive2 { name="multifluo"; version="1.1"; sha256="1hnh1gj6lfnh2fn0v064bszydgsr6p9f7p8yxyw5rdxfrxymiw09"; depends=[agricolae ellipse imager]; }; multifwf = derive2 { name="multifwf"; version="0.2.2"; sha256="1l6z3pzz6g6w1spp1f918jh6w0jm93qyc882rj8jhn1198d2s8nd"; depends=[]; }; - multigraph = derive2 { name="multigraph"; version="0.75"; sha256="0y4ibyy7v5hgxilrw5fxhj12597yl9q8zla5xvvhn9g7ir6xvmxd"; depends=[multiplex]; }; + multigraph = derive2 { name="multigraph"; version="0.91"; sha256="1ind8zqqcy4k97sdimn7bn85nbqwda92z0dp80kilcsvlhf47y35"; depends=[multiplex]; }; multigroup = derive2 { name="multigroup"; version="0.4.4"; sha256="1r79zapziz3jkd654bwsc5g0rphrk9hkp1fpik8jvjsa1cix40mq"; depends=[MASS]; }; multilaterals = derive2 { name="multilaterals"; version="1.0"; sha256="11zfdhn6qzqz0n31g23bn40wnfzkjndb753iiqvihirphzb74v5v"; depends=[ape igraph]; }; multilevel = derive2 { name="multilevel"; version="2.6"; sha256="19zrvpq23dn69d7kai1rgw5b8ibmgybnbg6isliq0n8bv9jvrzia"; depends=[MASS nlme]; }; @@ -8840,11 +9225,11 @@ in with self; { multimode = derive2 { name="multimode"; version="1.3"; sha256="130sh1r92z7415j4liz7ka1lpq0b5dxwqdh8s2lnd0wyjz8ysh3k"; depends=[diptest ks rootSolve]; }; multinbmod = derive2 { name="multinbmod"; version="1.0"; sha256="1c4jyzlcjkqdafj9b6hrqp6zs33q6qnp3wb3d7ldlij7ns9fhg71"; depends=[]; }; multinet = derive2 { name="multinet"; version="1.1.5"; sha256="15zwwksyfacvlkwrbslr2rz108xb1qmq37r6zxk022hi9gkh4mnz"; depends=[igraph Rcpp]; }; - multinets = derive2 { name="multinets"; version="0.2.0"; sha256="05m0xin8wxshmwb3b9cgsvi8037wvmirbyyim1xxx2ppfwrdr2a6"; depends=[igraph Rcpp]; }; + multinets = derive2 { name="multinets"; version="0.2.1"; sha256="00h1nqi49mix5rxp39i46pimmr3rl0c2869g7ss8cy0kl8hl41hz"; depends=[igraph igraphdata Rcpp]; }; multinomRob = derive2 { name="multinomRob"; version="1.8-6.1"; sha256="1fdjfk77a79fy7jczhpd2jlbyj6dyscl1w95g64jwxiq4hsix9s6"; depends=[MASS mvtnorm rgenoud]; }; - multipanelfigure = derive2 { name="multipanelfigure"; version="1.0.0"; sha256="08vwz3d3gwybb1dzxhmzzik636k7y6dvrwkxpdsij7zw9p5gbbgs"; depends=[assertive_base assertive_files assertive_numbers assertive_properties assertive_types caTools ggplot2 gridGraphics gtable jpeg magrittr png rsvg tiff]; }; + multipanelfigure = derive2 { name="multipanelfigure"; version="2.0.0"; sha256="0p9dipwkqfrfdd50s002byhwrdbzwp7nj1bswf8anpzvqnd8iz1a"; depends=[assertive_base assertive_files assertive_numbers assertive_properties assertive_types ggplot2 gridGraphics gtable magick magrittr stringi]; }; multipleNCC = derive2 { name="multipleNCC"; version="1.2-1"; sha256="080wpyifpw41p6jip2ia7439jdhzyb7lbhs2qzzg0hn6c0qq7mrr"; depends=[mgcv survival]; }; - multiplex = derive2 { name="multiplex"; version="2.8"; sha256="01l3kmvsrrq0c98dv5m25yjjcbc99in6dv9k5h54cyjsw4jsjhns"; depends=[]; }; + multiplex = derive2 { name="multiplex"; version="2.9"; sha256="1na0w4kzaswgzyw4wq8qmihasgbvbl426a2cx3y672l80rgjhhdh"; depends=[]; }; multipol = derive2 { name="multipol"; version="1.0-7"; sha256="1rkrg3kayxa05jayg8bk1mm3hcvi76570wqfja5953hd9j4krgha"; depends=[abind]; }; multirich = derive2 { name="multirich"; version="2.1.1"; sha256="04jr5jvds70j2psyxz12d2my61jcj5hvdyv10pvar2rpqaw0yxyh"; depends=[]; }; multiselect = derive2 { name="multiselect"; version="0.1.0"; sha256="1cda38zq7c1r56wdfpr5dg0jfw4kzi9p7jq59qm04j461j9ag3q6"; depends=[Hmisc]; }; @@ -8852,19 +9237,19 @@ in with self; { multisom = derive2 { name="multisom"; version="1.3"; sha256="0msxmrj4iawxg4vf4r7kj26zalxz4di2w4nxgxiakiig4g4ggy9z"; depends=[class kohonen]; }; multispatialCCM = derive2 { name="multispatialCCM"; version="1.0"; sha256="1fzd91w10iln8qb81z240lq3fi4gq22l4rh9npkav6fiq6g6rlp8"; depends=[]; }; multistate = derive2 { name="multistate"; version="0.2"; sha256="0jdgyzc99k4py39g98c4dlcdl918568ihcyhb7csxbsn1zn1qm9l"; depends=[date relsurv statmod survival]; }; - multistateutils = derive2 { name="multistateutils"; version="1.1.0"; sha256="1fpfmqwspvrhq4n02ha5vpaybnhg8ylqmixm2r2xrk2x3kq7733r"; depends=[data_table dplyr magrittr networkD3 Rcpp survival tidyr]; }; + multistateutils = derive2 { name="multistateutils"; version="1.2.0"; sha256="0dngc2vyqgcck1iaf9r116r6xp65axivqq8hl6sa7ib6rgwknhkw"; depends=[data_table dplyr magrittr networkD3 Rcpp survival tidyr]; }; multitaper = derive2 { name="multitaper"; version="1.0-14"; sha256="04wd9bbhyx7697pfy0fpj02v1csr48hkpqj62h9p8a6w84ji4k68"; depends=[]; }; - multivariance = derive2 { name="multivariance"; version="1.1.0"; sha256="1yl1qfckpf98j4ca3wv8zw8vd79isaqvq7qkakyhxy0ljx20jmlk"; depends=[abind igraph]; }; + multivariance = derive2 { name="multivariance"; version="1.2.0"; sha256="07cm2qji04lmxkm4sqigln7rihanaww98d4k8p1rn6d62mcxyizv"; depends=[abind igraph Rcpp]; }; multivator = derive2 { name="multivator"; version="1.1-9"; sha256="0vbqvhmym46zjr1h4s53sjrddfjpv8wi0sq4lrh2rmqarq068416"; depends=[emulator mvtnorm]; }; multiwave = derive2 { name="multiwave"; version="1.2"; sha256="1bw071izjxrsk5gx8s49nrlryabpgpg7k2z1ghmk8p6i9m5apnl8"; depends=[]; }; multiway = derive2 { name="multiway"; version="1.0-5"; sha256="0ni38h16nddwib9nvcby59rsn9913qwhrlkpdkz99fwz8cnl8rw2"; depends=[CMLS]; }; multiwayvcov = derive2 { name="multiwayvcov"; version="1.2.3"; sha256="1znsmca16jac8s5z0j64cck27pvf88anm1mfblabqchqqcz1ykfc"; depends=[boot sandwich]; }; multxpert = derive2 { name="multxpert"; version="0.1"; sha256="03mvf4m0kabm22vy4zkj1cfh884larpj8cbgg3p9l3pag20snf1l"; depends=[mvtnorm]; }; muma = derive2 { name="muma"; version="1.4"; sha256="0midx3wzyvcz8rk9kvsfll3xg41pkz40si4jw2ps54ykkf9rkm99"; depends=[bitops car caTools gplots gtools mvtnorm pcaPP pdist pls robustbase rrcov]; }; - mumm = derive2 { name="mumm"; version="0.2.0"; sha256="1dizjqi29cw2bpsr0i3a27mys2rs90yhbg1lc7a2nkg7lwqgb993"; depends=[lme4 Matrix Rcpp RcppEigen stringr TMB]; }; + mumm = derive2 { name="mumm"; version="0.2.1"; sha256="1wjg2pqn2wb9hk9mqgpi3k26qwjnkmp4apx09lxcwrz35bbwhfzv"; depends=[lme4 Matrix Rcpp RcppEigen stringr TMB]; }; munfold = derive2 { name="munfold"; version="0.3.5"; sha256="17zizx9r0f8dxb7dkgn1nn0fp7ydy6r155p1zfz0v93jc26lc1hb"; depends=[MASS memisc]; }; munsell = derive2 { name="munsell"; version="0.5.0"; sha256="16g1fzisbpqb15yh3pqf3iia4csppva5dnv1z88x9dg263xskwyh"; depends=[colorspace]; }; - munsellinterpol = derive2 { name="munsellinterpol"; version="2.0.1"; sha256="1pyqsgx2fhrh264yvg6ybkr4skksn1hlanh8950df1f77h70ji6i"; depends=[geometry rootSolve spacesRGB]; }; + munsellinterpol = derive2 { name="munsellinterpol"; version="2.1-3"; sha256="0y0ab133sh4c4avdgwjja14z290gczkzv3xlgr0lwdwhfbb60cc2"; depends=[geometry rootSolve spacesRGB spacesXYZ]; }; murphydiagram = derive2 { name="murphydiagram"; version="0.11"; sha256="0wax9gjhzz8nphzwijqzllz4y25jksf1vqfcbnfb7zafsfv40rib"; depends=[]; }; musicNMR = derive2 { name="musicNMR"; version="0.0.2"; sha256="09xxc78ajk428yc3617jfxqp5fy89nfc24f1rig6cw28fflwqj0k"; depends=[seewave]; }; musica = derive2 { name="musica"; version="0.1.3"; sha256="0cfzfar706l0xdb0n11m18mayj5rrplvf4qry36vgxsiaxcba90r"; depends=[data_table lubridate magrittr qmap]; }; @@ -8872,9 +9257,9 @@ in with self; { mutSignatures = derive2 { name="mutSignatures"; version="1.2"; sha256="1kbp221lm43a5wiw754yjkd3qidmca20m0i8jlxsqk8ijbp40ky2"; depends=[cluster doParallel foreach ggplot2 pracma proxy]; }; mutoss = derive2 { name="mutoss"; version="0.1-12"; sha256="1yk7p7pb2xm38d3j19ysgwmix48lvimbhkhjjwk5jmr1a0ysx298"; depends=[multcomp multtest mvtnorm plotrix]; }; mutossGUI = derive2 { name="mutossGUI"; version="0.1-11"; sha256="08pcca9gzns83az6jbjzv4xhm1wgmchhzz4f54x1aq0nmvsz3qq1"; depends=[CommonJavaJars JavaGD JGR multcomp mutoss plotrix rJava]; }; - mvLSW = derive2 { name="mvLSW"; version="1.2.1"; sha256="012p828pyzz6xnv2akax5hx79v522dg4a2gqrjss526qylpg5j9l"; depends=[fields wavethresh xts zoo]; }; + mvLSW = derive2 { name="mvLSW"; version="1.2.2"; sha256="19bz1hryw9jhw2y3cnx4bqykdqpfgdlnmkx7ka8i96yb5xg4791q"; depends=[fields wavethresh xts zoo]; }; mvMISE = derive2 { name="mvMISE"; version="1.0"; sha256="0lnc5g3ksl5cvwylh8p8baxyvq3z32a2i337q7lhg00j031ccy5c"; depends=[lme4 MASS]; }; - mvMORPH = derive2 { name="mvMORPH"; version="1.0.9"; sha256="09368vgyb1s18awfr07hs1s40n2h15hy08fmir3ayhdfrdain4k6"; depends=[ape corpcor phytools spam subplex]; }; + mvMORPH = derive2 { name="mvMORPH"; version="1.1.0"; sha256="0v63wi4la5kw59xdl1bmsc8hh8gfpm89s79dzrkbdkmakm740vvx"; depends=[ape corpcor glassoFast phytools spam subplex]; }; mvMonitoring = derive2 { name="mvMonitoring"; version="0.1.0"; sha256="03nvq8nmrmrpzyxlsqzww5ghk640115l1jgmgwfahhjxkdpkzfxx"; depends=[BMS dplyr lazyeval plyr rlang robustbase xts zoo]; }; mvPot = derive2 { name="mvPot"; version="0.1.4"; sha256="04l9dn8amwp366b6lic5fkl4kck0x2m3xcsqz6as4c3h772nhq1w"; depends=[evd gmp MASS numbers]; }; mvProbit = derive2 { name="mvProbit"; version="0.1-8"; sha256="07dizclqjlwj29yb3xwjihjh8kmn6jiq5cpf8rcirylzykfdv3wk"; depends=[abind bayesm maxLik miscTools mvtnorm]; }; @@ -8885,10 +9270,10 @@ in with self; { mvbutils = derive2 { name="mvbutils"; version="2.7.4.1"; sha256="1vs97yia78xh35sdfv5pj3ddqmy83qgamvyyh9gjg0vdznqhffzg"; depends=[]; }; mvc = derive2 { name="mvc"; version="1.3"; sha256="0kmh6vp7c2y9jf71f4a29b0fxcl0h7m4p8wig4dk3fi7alhjf7ym"; depends=[rattle]; }; mvcluster = derive2 { name="mvcluster"; version="1.0"; sha256="0yfl31scdgsiljvpv1yxc5bwwzr6kbhpjwqh2kql7xf0m0hc1pr4"; depends=[Rcpp RcppArmadillo]; }; - mvctm = derive2 { name="mvctm"; version="1.1"; sha256="00lrnqnzpnvrl84b41ai33iwpyb4qzpjyqrw1d18hj6szybdfhsv"; depends=[Formula MNM nlme quantreg Rfit SpatialNP]; }; + mvctm = derive2 { name="mvctm"; version="1.2"; sha256="0810bmk748cvbls4djspqvkk65j605djqicqg4rkwy2a799l3rgc"; depends=[Formula MNM nlme quantreg Rfit SpatialNP]; }; mvcwt = derive2 { name="mvcwt"; version="1.3"; sha256="0fqdyypmszm00rpl04z8kiiw6jd416a0b2rap3dqq3kchnz8h4s2"; depends=[foreach RColorBrewer]; }; mvdalab = derive2 { name="mvdalab"; version="1.4"; sha256="18wchy517qd45w5y0sr8lcafb7kmscy0q9vsryk9if6x2jq22lqz"; depends=[car dummies ggplot2 MASS moments penalized plyr reshape2 sn]; }; - mvglmmRank = derive2 { name="mvglmmRank"; version="1.2-1"; sha256="1gyc1xjyapadrv43kd4kngld37q8drhx4qfcimsvf7jdp33y6g5d"; depends=[MASS Matrix numDeriv]; }; + mvglmmRank = derive2 { name="mvglmmRank"; version="1.2-2"; sha256="00zxqby8syb959fqgw9i7b0yamgjwddq32jlin6qmnzys5bg1556"; depends=[MASS Matrix numDeriv]; }; mvinfluence = derive2 { name="mvinfluence"; version="0.8-3"; sha256="0nygsldkm61ny5ljcc1r667rywj239j4x59ssi81cb2005kkjgm5"; depends=[car heplots]; }; mvmesh = derive2 { name="mvmesh"; version="1.5"; sha256="0my43559jh8ln1fx5rh5vw24vr6kxpd2h5scylfxfv2qfk794l0b"; depends=[abind geometry rcdd rgl SimplicialCubature]; }; mvmeta = derive2 { name="mvmeta"; version="0.4.11"; sha256="1h1393s7xdi4sv461srsard6w961mcxxmxq9mkmfsgw5hdmkwkr2"; depends=[]; }; @@ -8899,12 +9284,12 @@ in with self; { mvnmle = derive2 { name="mvnmle"; version="0.1-11.1"; sha256="131k2bnn6194y3f35r9cgys8g1z2y52123ng8iijpkpbfd147y92"; depends=[]; }; mvnormtest = derive2 { name="mvnormtest"; version="0.1-9"; sha256="1iaxjwp7bgxhaa4xqvgqb61316mq2fb0452d0pabhmbxkvmvdnj6"; depends=[]; }; mvnpermute = derive2 { name="mvnpermute"; version="1.0.0"; sha256="0mbyj5i5vysrnl3pgypl0cjf3sylsvzfl1pcxkn0q16560vqh2ba"; depends=[]; }; - mvord = derive2 { name="mvord"; version="0.3.1"; sha256="1i1jhvs9h5s07zqa84i1lm3gx70v32agsiymc0v1msqai12plknb"; depends=[MASS Matrix mnormt numDeriv optimx pbivnorm]; }; + mvord = derive2 { name="mvord"; version="0.3.2"; sha256="0gpm7biwmvimsv7zcc8h8gmzl6f1n52gx68cmz2ppz0d1fv0w8sb"; depends=[BB dfoptim MASS Matrix minqa mnormt numDeriv optimx pbivnorm ucminf]; }; mvoutlier = derive2 { name="mvoutlier"; version="2.0.9"; sha256="1d562h3xicq962h27fi95qhrz9vkwxk0p8axhps1cy4b49w4bygi"; depends=[robCompositions robustbase sgeostat]; }; mvprpb = derive2 { name="mvprpb"; version="1.0.4"; sha256="1kcjynz9s7vrvcgjb9sbqv7g50yiymbpkpg6ci34wznd33f7nrxm"; depends=[]; }; mvrtn = derive2 { name="mvrtn"; version="1.0"; sha256="0k0k76wk5zq0cjydncsrb60rdhmb58mlf7zhclhaqmli1cy697k8"; depends=[]; }; mvsf = derive2 { name="mvsf"; version="1.0"; sha256="1krvsxvj38c5ndvnsd1m18fkqld748kn5j2jbgdr3ca9m3i5nlwf"; depends=[mvnormtest nortest]; }; - mvst = derive2 { name="mvst"; version="1.0.1"; sha256="0sv8pd1524pr3xpxplq468dxfd0wipdr41awqwvcljpw5wgl34qa"; depends=[MCMCpack mnormt mvtnorm]; }; + mvst = derive2 { name="mvst"; version="1.1.0"; sha256="03q0kdychsmn4wcn50b6dqhxn4f2mjvrr5rac942xdv75w8qklc9"; depends=[MCMCpack mnormt mvtnorm]; }; mvtboost = derive2 { name="mvtboost"; version="0.5.0"; sha256="06zgx1c2470bh3x6s2awzkxbyij6bvzv23xbvamg77v5pz5bjj6h"; depends=[gbm RColorBrewer]; }; mvtmeta = derive2 { name="mvtmeta"; version="1.0"; sha256="0g0d4lrz854wkd0dz5aiad54i46aqkfhsq6cpbsfv0w5l2kwiqqz"; depends=[gtools]; }; mvtnorm = derive2 { name="mvtnorm"; version="1.0-8"; sha256="0la42lylb7cjrcrc285bn69bz9kyg556xw317iz139dp1yswl410"; depends=[]; }; @@ -8917,28 +9302,29 @@ in with self; { mycor = derive2 { name="mycor"; version="0.1.1"; sha256="00hqmvga22bv43833s974s7ky7lbry3r2bb5kza7kvkn1p6773rg"; depends=[lattice]; }; myepisodes = derive2 { name="myepisodes"; version="1.1.1"; sha256="0xk9bwgpl630nhc8qa2pc0rwqbqk3haxnp78gfxq6sn6z7i44k1p"; depends=[XML]; }; mztwinreg = derive2 { name="mztwinreg"; version="1.0-1"; sha256="1rg6ikaqdrc7q44s3r3km8h45prnvcpzpxd7nxbmh209iz9j19ai"; depends=[mclogit rms]; }; - n1qn1 = derive2 { name="n1qn1"; version="6.0.0-1"; sha256="01bci81lhanxpfl454gl09krgb4229dnq9f34bngwm8ygvdadfgy"; depends=[Rcpp RcppArmadillo]; }; + n1qn1 = derive2 { name="n1qn1"; version="6.0.1-3"; sha256="1k13x4h2rbcra3b8873ymvn4bgj6psaw05ba0hac0spymbp01fzi"; depends=[Rcpp RcppArmadillo]; }; nCDunnett = derive2 { name="nCDunnett"; version="1.1.0"; sha256="0q2db1pixqr0wbx4bd05c98i1p0vgaqsfa1iwjxr08c62a5xhkks"; depends=[]; }; - nCal = derive2 { name="nCal"; version="2017.12-3"; sha256="1k03zrf67il7miap81r2fdnsi15i98wmwc3a8zxn54qfr2w9pcy6"; depends=[drc gdata gWidgets kyotil]; }; + nCal = derive2 { name="nCal"; version="2018.8-20"; sha256="1idgpzivw5wa423z86rf60ri50cyh8p38p4r493i9b2m9qzzqf1x"; depends=[drc gdata gWidgets kyotil]; }; nFCA = derive2 { name="nFCA"; version="0.3"; sha256="1jyyzagmppm3i7vh3ia4ic0zql1w04f66z81v0zpdihd4cbl5ra7"; depends=[]; }; nFactors = derive2 { name="nFactors"; version="2.3.3"; sha256="016d76yfxz7gx7zz5dgwjmj2c5m6kxdmqj0lln5w6d70r9g1kxg7"; depends=[boot lattice MASS psych]; }; nLTT = derive2 { name="nLTT"; version="1.4"; sha256="0718r93xw8hw639xpa5w6lax7agr2k3avqx9dcdybqdp19x9qia0"; depends=[ape coda deSolve testit]; }; nVennR = derive2 { name="nVennR"; version="0.2.1"; sha256="11qkwd8laf67iqyzx3ia424vykvsvy0k9d7labdgqfx2ihd95hh2"; depends=[Rcpp]; }; na_tools = derive2 { name="na.tools"; version="0.3.1"; sha256="1lbzsckfg297n85kzbin65x1l6qgg9l50hd3xi2gflxc7n2xb8bw"; depends=[]; }; - nabor = derive2 { name="nabor"; version="0.4.7"; sha256="16dxnvq6yxlrignzvxjdwzwm32fn2a8bsjqjsg5qz94ir7g3pzm6"; depends=[BH Rcpp RcppEigen]; }; + nabor = derive2 { name="nabor"; version="0.5.0"; sha256="1nj39cdfwrmhgsi3cq8imxv3n6xzc1v6dzdb2cf2hybjk368v4s7"; depends=[BH Rcpp RcppEigen]; }; nadiv = derive2 { name="nadiv"; version="2.16.0.0"; sha256="0pfg9hbhcjgbfmakl1jqqaf9i07i5z5jk7sh2x7x7p4354z30z9y"; depends=[Matrix]; }; naivebayes = derive2 { name="naivebayes"; version="0.9.2"; sha256="0xmgcvvhfh7v8afi8fywaldawbx3s5hwgpvyyp2c9m6nrhw1kknl"; depends=[]; }; naivereg = derive2 { name="naivereg"; version="1.0.1"; sha256="0wvyv54q3r4jz03jdbsmnxsinzpqcac6xjvzcrjjdzbkqfxicxal"; depends=[gmm grpreg]; }; namedCapture = derive2 { name="namedCapture"; version="2017.06.01"; sha256="14zimn3wbavbkwra8vfmqdm1q5bmlmsbg0b29cjly5dd4zlfzzb0"; depends=[]; }; namespace = derive2 { name="namespace"; version="0.9.1"; sha256="1bsx5q19l7m3q2qys87izvq06zgb22b7hqblx0spkvzgiiwlq236"; depends=[]; }; nandb = derive2 { name="nandb"; version="1.0.1"; sha256="1hg6j8sv2fhaqwp2hzkgdwfymr2f3j6506vz2kshj3h3387nfhm4"; depends=[autothresholdr checkmate detrendr dplyr filesstrings ijtiff magrittr MASS purrr Rcpp rlang stringr]; }; - naniar = derive2 { name="naniar"; version="0.3.1"; sha256="0mscn99x3wwf5jdi6khlf6n9w737icf07vhz6yqsqpkzsd8z825w"; depends=[dplyr forcats ggplot2 glue magrittr purrr rlang tibble tidyr viridis visdat]; }; + naniar = derive2 { name="naniar"; version="0.4.0.0"; sha256="0b8hi00x6anlkkpw7mr6hiizpw6ljv3m5h9w6c4rj05psv5nm3w2"; depends=[dplyr forcats ggplot2 glue magrittr purrr rlang tibble tidyr UpSetR viridis visdat]; }; nanop = derive2 { name="nanop"; version="2.0-6"; sha256="007gdc93pk0vpfmsw7zgfma2k1045n2cxwwsyy276smy0ys9fdhp"; depends=[distrEx rgl]; }; - nanotime = derive2 { name="nanotime"; version="0.2.1"; sha256="0zb6gwxzmcmk2v1020xc2l3bzrz8kz1b445x3ci6s7pgwh0njxra"; depends=[bit64 RcppCCTZ zoo]; }; + nanotime = derive2 { name="nanotime"; version="0.2.3"; sha256="0pcz49rm9l97xj5s7pvff2mf9373xhj0wr8bc57ibbi38adgcvbx"; depends=[bit64 RcppCCTZ zoo]; }; naptime = derive2 { name="naptime"; version="1.3.0"; sha256="1cadfv5sdsmz61kf96hf2gbnghf24q40g5c3h9b8prvkxslap691"; depends=[lubridate]; }; nardl = derive2 { name="nardl"; version="0.1.5"; sha256="1xi1fkwgkfc1b8qsgi4lrjx419778qk0vxzl23azcziwa6fha5p8"; depends=[Formula gtools strucchange tseries]; }; - narray = derive2 { name="narray"; version="0.4.0"; sha256="0cr0y8mqwprxk0bv9160xvqxgvqkihn3avzsjm6ccivvb8zlkqxv"; depends=[reshape2 stringr]; }; + narray = derive2 { name="narray"; version="0.4.1"; sha256="09n50shk2gy1m85kmvq8g3zh2nrikpllv8gph9x2id1p62rbqf1y"; depends=[progress stringr]; }; nasadata = derive2 { name="nasadata"; version="0.9.0"; sha256="0y88qdy8c1y0prsajxic5vdqfixv9knjsbhw3vbfac8wv3a69bjl"; depends=[dplyr jsonlite plyr png]; }; + nasapower = derive2 { name="nasapower"; version="1.0.2"; sha256="1p99yl47l1dvyhkl38alzszbk5vs28a2zh3miqxsqmsqzmmjbsd3"; depends=[APSIM crul curl jsonlite lubridate readr tibble]; }; nasaweather = derive2 { name="nasaweather"; version="0.1"; sha256="05pqrsf2vmkzc7l4jvvqbi8wf9f46854y73q2gilag62s85vm9xb"; depends=[]; }; nat = derive2 { name="nat"; version="1.8.11"; sha256="1s5hbi1b20jq0qv4px0zrwsivhi2mdlqbwx4lv55mdhj447rxk1x"; depends=[digest filehash igraph nabor nat_utils plyr rgl yaml]; }; nat_nblast = derive2 { name="nat.nblast"; version="1.6.2"; sha256="0b2gzyzszj2v5girxyv31nvds0837lzvim7x7bs9h897yrxs57k8"; depends=[dendroextras nabor nat plyr rgl spam]; }; @@ -8947,25 +9333,26 @@ in with self; { natserv = derive2 { name="natserv"; version="0.1.4"; sha256="0qwf7lapx5gchk8xmdnmxr10j5dnkp52mqnh1ja216z7l841cl07"; depends=[crul data_table tibble xml2]; }; natural = derive2 { name="natural"; version="0.9.0"; sha256="0zxwbf3gg2h0bhl2w0md3rd162vlsgg0dv3187hc0ax7333cc4cx"; depends=[glmnet Matrix]; }; naturalsort = derive2 { name="naturalsort"; version="0.1.3"; sha256="0mz801y9mzld9ypp3xmsjw2d8l9q97sdnv09wrci9xi3yg2sjf6d"; depends=[]; }; - nbc4va = derive2 { name="nbc4va"; version="1.0"; sha256="0y1qpkzjr327qyvmqf129m400rvn6gwk72ccnly6cqq53icrarn4"; depends=[]; }; + nbc4va = derive2 { name="nbc4va"; version="1.1"; sha256="025p9h1ghrsq4h439gx25ffpyvh2kp1i51hm7kbzx8nmh4ka8aff"; depends=[]; }; nbconvertR = derive2 { name="nbconvertR"; version="1.0.2"; sha256="1dc9jxfibvb27qwiykj93322nb1ahwrg69zqcc0p9xp0rpsim02w"; depends=[]; }; nbpMatching = derive2 { name="nbpMatching"; version="1.5.1"; sha256="0f90k9vq05gkc0sgywb98frig63df0ih4z41dq7m2inx1zk5rqns"; depends=[Hmisc MASS]; }; - ncar = derive2 { name="ncar"; version="0.4.0"; sha256="0in8nvkxgd6p5xdwyqnqlnhskysbja9lw1pw3hl8zfn1qhcgqxl9"; depends=[NonCompart rtf]; }; + ncappc = derive2 { name="ncappc"; version="0.3.0"; sha256="0bf00iskrd3x43839bwn957mi3qvm2dhcmqa7hl1ib0gp2r1cnzx"; depends=[bookdown Cairo dplyr ggplot2 gridExtra gtable knitr lazyeval magrittr PopED purrr readr reshape2 rlang rmarkdown scales tibble tidyr xtable]; }; + ncar = derive2 { name="ncar"; version="0.4.1"; sha256="0nqc3ari3ghxygqvb3vfzdqclh77mbhyh3pki86wwx6ym62b1bx0"; depends=[NonCompart rtf]; }; ncbit = derive2 { name="ncbit"; version="2013.03.29"; sha256="0f07h8v68119rjvgm84b75j0j7dvcrl6dq62vp41adlm2hgjg024"; depends=[]; }; ncdf_tools = derive2 { name="ncdf.tools"; version="0.7.1.295"; sha256="1jgxivmg2gzvkn09n13i5xr1v0xcyp5ckhwxz6g5kdh9z2dkjhc2"; depends=[abind chron JBTools plotrix raster RColorBrewer RNetCDF]; }; ncdf4 = derive2 { name="ncdf4"; version="1.16"; sha256="0lwjjis0b83c4l3xvqai4ckzrskd6mychck1iwxcxgjvh0d77mgd"; depends=[]; }; ncdf4_helpers = derive2 { name="ncdf4.helpers"; version="0.3-3"; sha256="051akd7r6zx805a0xwcs95q5sd8alag0f1gzqjk3n188q8r3ji5j"; depends=[abind ncdf4 PCICt]; }; ncdump = derive2 { name="ncdump"; version="0.0.3"; sha256="09g98mzpky32z41jf23ahzhyv34l34y1gqq99j2hl4pqlvvhxs9i"; depends=[dplyr ncdf4]; }; - ncf = derive2 { name="ncf"; version="1.2-5"; sha256="0w7zaiiy1ddahq8nw3q23k6qh4yw2d1iw4wybwiii3spn8hab57s"; depends=[]; }; + ncf = derive2 { name="ncf"; version="1.2-6"; sha256="1ac1jc7f6ywngbf9h9vb4rfm10cakljn1i48ga815h3m71cagmak"; depends=[]; }; ncg = derive2 { name="ncg"; version="0.1.1"; sha256="1jzkzp61cc5jxmdnl867lcrjjm7y2iw9imzprbd098p1j3w8fvj7"; depends=[]; }; - ncmeta = derive2 { name="ncmeta"; version="0.0.2"; sha256="1qr0zfyy8g3zrmvg6i6b7sfvl3lavr391rqgf6pqhslg7i9cgpiz"; depends=[dplyr rlang RNetCDF tibble]; }; - ncodeR = derive2 { name="ncodeR"; version="0.1.0"; sha256="0bjjz9x6cfgkgc6z32pkl5b6khhdl5yjn9mi2b3n184kvpszjygj"; depends=[cli R6 rhoR]; }; + ncmeta = derive2 { name="ncmeta"; version="0.0.3"; sha256="14gbl7ln5ylplj12rsksyw0wlimh1gjnjm1c26mc8yg2h1cv3667"; depends=[dplyr rlang RNetCDF tibble]; }; + ncodeR = derive2 { name="ncodeR"; version="0.1.2"; sha256="1wa87shdcngf6x22gcysylkxvj8h2k6f88r867wiagz0c01mq9bf"; depends=[cli R6 rhoR]; }; ncpen = derive2 { name="ncpen"; version="0.2.0"; sha256="1wrpscd9n7z9lz7537qyy4rn4pjznlb8zwb79kkzmnfvyj21fi1r"; depends=[Rcpp RcppArmadillo]; }; - ncvreg = derive2 { name="ncvreg"; version="3.10-0"; sha256="0q9rk1mz2rm1h99m093kz7a2p6fl3pj4nqzblp3154q8i1kva7za"; depends=[]; }; - ndjson = derive2 { name="ndjson"; version="0.6.0"; sha256="0w7a587q45hkzmjhzlyrhk0hw4c8avkfzf4ai0wib5qk3al8gk6n"; depends=[data_table dplyr dtplyr Rcpp]; }; - ndl = derive2 { name="ndl"; version="0.2.17"; sha256="08h01rw7gsa31zp91q2rsw1ba9yf0fyhz3w8s9xq5788qwc80280"; depends=[Hmisc MASS Rcpp]; }; - ndtv = derive2 { name="ndtv"; version="0.12.2"; sha256="0jyzdi19n2h6kf8kbibg1lap3mxq9bbn390xwrv2abnc3y437vqb"; depends=[animation base64 jsonlite MASS network networkDynamic sna statnet_common]; }; - nearfar = derive2 { name="nearfar"; version="1.1"; sha256="0i2nc1b4vslgjj29x5q24yxv9l3i0g5hcrbm9xy1b3039n70cwix"; depends=[car GenSA MASS nbpMatching]; }; + ncvreg = derive2 { name="ncvreg"; version="3.11-0"; sha256="0348xngd9357x3nzhpqbcxcp1vgb5ycz8wjv023lm9lmzyj8frzc"; depends=[]; }; + ndjson = derive2 { name="ndjson"; version="0.7.0"; sha256="1hqbp5aii3x2yygsy4zfv3j2zl78fzrydqj3ycfl3k3nnrkrf8h5"; depends=[data_table dplyr dtplyr Rcpp]; }; + ndl = derive2 { name="ndl"; version="0.2.18"; sha256="0b235v6jf98rrqp5aqw3jkk7mq8dbqmhb758zbzza1mavh4n2k7s"; depends=[Hmisc MASS Rcpp]; }; + ndtv = derive2 { name="ndtv"; version="0.12.3"; sha256="08bvkfraj2sl879fywsl5k403xfhxfg55yd72nms2z8d3fqgcvj8"; depends=[animation base64 jsonlite MASS network networkDynamic sna statnet_common]; }; + nearfar = derive2 { name="nearfar"; version="1.2"; sha256="116rq797a5fascirz8xg465fywjf40j1k5czryvqzpik0if0w00r"; depends=[car GenSA MASS nbpMatching]; }; neariso = derive2 { name="neariso"; version="1.0"; sha256="1npfd5g5xqjpsm5hvhwy7y84sj5lqw9yzbnxk6aqi80gfxhfml4c"; depends=[]; }; neat = derive2 { name="neat"; version="1.1.3"; sha256="0d8igx576jhi7f666nwn0wpdyvin974k5cfm7wdszzbnpng5961k"; depends=[igraph]; }; neatmaps = derive2 { name="neatmaps"; version="1.1.0"; sha256="0qsc0jwnyadbm45qrskpmw12i980q11i988mga8ky3x4fa4jp82d"; depends=[dendextend ggplot2 heatmaply igraph pvclust]; }; @@ -8974,25 +9361,26 @@ in with self; { negenes = derive2 { name="negenes"; version="1.0-8"; sha256="0qyhypryp3p8c876jffg1syg05b370mw24clwlx733yx86qhmb1v"; depends=[]; }; neighbr = derive2 { name="neighbr"; version="1.0"; sha256="0612nzpryj4xp0ncpvpn56x5n9ammzjp3ysq1rj1fc84h0p7nml3"; depends=[]; }; neldermead = derive2 { name="neldermead"; version="1.0-11"; sha256="0gf9rfwz48sadl6960mpfb6a3l9n5p28yq3n0a9vz8mr57vh1dzg"; depends=[optimbase optimsimplex]; }; - neotoma = derive2 { name="neotoma"; version="1.7.0"; sha256="0f4s5yw0yj4n8lkvbl2l3ivdclg9pknyss7qhppp85rdxzwxilpq"; depends=[analogue httr jsonlite leaflet plyr reshape2 xml2]; }; + neotoma = derive2 { name="neotoma"; version="1.7.2"; sha256="0kxx1ymdy2grjmi7wb2lrk5hwrfgrlxpvhwwwkwxaqrpxmx6sk7v"; depends=[analogue dplyr httr jsonlite leaflet plyr reshape2 xml2]; }; nephro = derive2 { name="nephro"; version="1.2"; sha256="1izmzx8lah322xzb42asfnrvr2c9yqd0zf7fmrhwd3p4rr1rqa7d"; depends=[]; }; - nesRdata = derive2 { name="nesRdata"; version="0.1.0"; sha256="1h33hql0vgkr2ps1ysisdxxb0cnm18mh8sbd3fxy9xf42icwfwdb"; depends=[dataone dplyr purrr rappdirs readr]; }; + nesRdata = derive2 { name="nesRdata"; version="0.2.0"; sha256="1cr5d600bnslxbm2kknzwivvb4zyfsrf8rbrk3kk0j6dpclx5x6s"; depends=[dataone dplyr purrr rappdirs readr]; }; nestedRanksTest = derive2 { name="nestedRanksTest"; version="0.2"; sha256="0r08jp8036cz2dl1mjf4qvv5qdcvsrad3cwj88x31xx35c4dnjgj"; depends=[]; }; - nestfs = derive2 { name="nestfs"; version="0.8.4"; sha256="1w2wb3wphpx8y17jwpnbqq9igyq854rsa35bhk51m422zhygqygk"; depends=[dgof foreach]; }; + nestfs = derive2 { name="nestfs"; version="0.9"; sha256="0vx6bvm4wpx4hnyxnldvkj0il7j7hlrmlpiza1dawqr3kx08c86l"; depends=[dgof foreach pROC]; }; net_security = derive2 { name="net.security"; version="0.3.0"; sha256="15vvcmakl9hl1srdhjf73g2bwwcxn93220i4gv0rcsw5732mjanz"; depends=[data_table dplyr jsonlite plyr R_utils stringr XML]; }; - netCoin = derive2 { name="netCoin"; version="0.2.8"; sha256="0axac72fj5qhssdpx8k20lgayzpwzcd3pp7cz4mv6cwfzc0y8768"; depends=[haven igraph Matrix]; }; + netCoin = derive2 { name="netCoin"; version="0.3.0"; sha256="1lzzl28q3ald01yaxiiwqj716cpslya8i2m89nydpylh0c1pgs52"; depends=[haven igraph Matrix]; }; netSEM = derive2 { name="netSEM"; version="0.5.0"; sha256="0gcs38r3xwwcxhgs1xfbkccz9k0y7dk5kky48fvmys8v1p4rsjpp"; depends=[DiagrammeR DiagrammeRsvg gtools htmlwidgets knitr magrittr MASS png rsvg segmented svglite]; }; netassoc = derive2 { name="netassoc"; version="0.6.3"; sha256="1hyshnbpq60a3y13b4sh1c2rk78x09q01b7q6xrgv10w7bn9r2sg"; depends=[corpcor huge igraph infotheo vegan]; }; netcoh = derive2 { name="netcoh"; version="0.2"; sha256="0q60hvyparlwdww6as6hcdzfs6q3n8z1rfpj53r5q2s77x6q07xx"; depends=[Matrix Rcpp RcppArmadillo]; }; netcom = derive2 { name="netcom"; version="1.0.4"; sha256="0fka14sffm0p1gldk27fd62ng05spfpbn665b4w5hdf1z4z0bs20"; depends=[clue expm igraph Matrix pdist pracma vegan]; }; + netdep = derive2 { name="netdep"; version="0.1.0"; sha256="0mrbqn5d8iqvs98a0kski0vya135z7l902xafya96s2h288jchx7"; depends=[igraph igraphdata MASS mvrtn]; }; netdiffuseR = derive2 { name="netdiffuseR"; version="1.20.0"; sha256="0z7k62dipksc8gfppicbknh5sig7jdlr80h15q89bbk26jg5lqsr"; depends=[boot igraph MASS MatchIt Matrix network networkDynamic Rcpp RcppArmadillo sna SparseM viridis]; }; netgen = derive2 { name="netgen"; version="1.3"; sha256="1iywpl9n1yplnd38dff8m9mz1vlfbvplw393grhpav5czcknj160"; depends=[BBmisc checkmate ggplot2 igraph lhs lpSolve mvtnorm stringr]; }; netgsa = derive2 { name="netgsa"; version="3.0"; sha256="0cqyiilpxhdi6zmibn85y1aqwpcs1aialz34klakmllzn6kvdsng"; depends=[corpcor glasso glmnet igraph Matrix]; }; - netgwas = derive2 { name="netgwas"; version="1.5.0"; sha256="0ixdk602v58ii4awrvj63j0zn90z3csc0lcwajfa8j8ymryc0hgs"; depends=[glasso huge igraph MASS Matrix RBGL tmvtnorm]; }; - netjack = derive2 { name="netjack"; version="1.0.0"; sha256="016byr8qsmmiyk5wdafn809w2sc71mav7jdxyg4cs48gzp7zslpp"; depends=[brainGraph ggplot2 igraph Rdpack]; }; + netgwas = derive2 { name="netgwas"; version="1.7.0"; sha256="1jyn0i3i5pjvik9jpgyd9sd28p0ln1xh5nxzssw3nynp4hyqmvix"; depends=[glasso huge igraph MASS Matrix qtl RBGL tmvtnorm]; }; + netjack = derive2 { name="netjack"; version="1.1.1"; sha256="0pb9phfdjfp8yxlv5p0qb6vxhh8vb9iviffzrbj8x8dy3y3c9vp5"; depends=[brainGraph ggplot2 igraph Rdpack]; }; netmeta = derive2 { name="netmeta"; version="0.9-8"; sha256="0bkfxdz14lg9r51ykwmkmpm6vhbvly35hrcgj6f26g36ihagjksd"; depends=[magic MASS meta]; }; - netrankr = derive2 { name="netrankr"; version="0.2.0"; sha256="1y56y5wv95d7mmjf8rrwr7cs0k64h9a2qbpind4xp0kakpjihn7m"; depends=[igraph Rcpp RcppArmadillo]; }; - netregR = derive2 { name="netregR"; version="0.3.1"; sha256="0ki0ywnwjba53bram4dxxdxx631b0rywp1rjgj83nvdbg3mdcp7x"; depends=[Matrix]; }; + netrankr = derive2 { name="netrankr"; version="0.2.1"; sha256="0csgi09ijp7ygwk7x057l9xjrzyhr7sav8hamh0p6i72l6719ssl"; depends=[igraph Rcpp RcppArmadillo]; }; + netregR = derive2 { name="netregR"; version="1.0.1"; sha256="0n5absjra0imddz1spy1piij5rdz76wi4g568yby3rbhkm1896rs"; depends=[Matrix]; }; nets = derive2 { name="nets"; version="0.9"; sha256="1wcr0fj50w3rqxw0k9cb81c2psdkb0dwwwzrjvxv50hksbhyi8kn"; depends=[igraph]; }; network = derive2 { name="network"; version="1.13.0.1"; sha256="1bbkbqkqf1d7irfwh08c13c2pfypir1ssvlqrln83irqns1ikdv0"; depends=[]; }; networkD3 = derive2 { name="networkD3"; version="0.4"; sha256="02wxki67drppgfka1is1ykg1f2rxf0x0657c0crj7ipfy62jbf1k"; depends=[htmlwidgets igraph magrittr]; }; @@ -9015,32 +9403,35 @@ in with self; { neutralitytestr = derive2 { name="neutralitytestr"; version="0.0.2"; sha256="1p1zjc3fiphkxflsyzrxx8af98aa0gp9pvby63mmrsjb0z7ps948"; depends=[cowplot dplyr ggplot2 ggpmisc pracma scales]; }; neverhpfilter = derive2 { name="neverhpfilter"; version="0.2-0"; sha256="0m4gbqnjw2nmhf25svznlf6pd0b0mslk52lpirmlj1iv04w1aq1i"; depends=[xts zoo]; }; newTestSurvRec = derive2 { name="newTestSurvRec"; version="1.0.2"; sha256="06p782md33wqh5wa1735yg5i01d42p74kl7h5qhqs9cd732ls6pz"; depends=[]; }; + newsmap = derive2 { name="newsmap"; version="0.6"; sha256="1zcpwh8v7lswg0anjhjq8hmz8z9rjmvlyrh6jr5p01sj53mv9sha"; depends=[Matrix quanteda stringi]; }; ngram = derive2 { name="ngram"; version="3.0.4"; sha256="1q4y64dy7vcjikbfx20fpdiy1kwvxay4y90xr5j8d8zkqnva0way"; depends=[]; }; ngramrr = derive2 { name="ngramrr"; version="0.2.0"; sha256="1p8s4p3h27g647rxx9qjfad5dzbngjbmvhw4gz0jbsmfqrsf72by"; depends=[tau tm]; }; ngspatial = derive2 { name="ngspatial"; version="1.2-1"; sha256="1c65ws9b9s2grr44lqg8026c4p2875d0426dfmrakpb44mw2zppp"; depends=[batchmeans Rcpp RcppArmadillo]; }; ngstk = derive2 { name="ngstk"; version="0.2.1"; sha256="12zpl20i07d1f9navs9jjrialfh798wrfn1241j7s9h3rd6xi40l"; depends=[configr data_table stringr]; }; - nhanesA = derive2 { name="nhanesA"; version="0.6.4.4"; sha256="0vl8bg718fk97x3yrjkg48hj3lap4gzhri53gzcwz9g4rfyrlwxp"; depends=[Hmisc magrittr plyr rvest stringr xml2]; }; + nhanesA = derive2 { name="nhanesA"; version="0.6.5"; sha256="0bb53s379qrm8xqp4bsi5vgk6v6hvwadzjv09pvdp1n45z7rqj86"; depends=[Hmisc magrittr plyr rvest stringr xml2]; }; nhlscrapr = derive2 { name="nhlscrapr"; version="1.8.1"; sha256="107k063279w9cy6in99rn03w2rq42ci8s6dvb9x6f9w7y3bdpvzn"; depends=[biglm bitops RCurl rjson]; }; nhstplot = derive2 { name="nhstplot"; version="1.0.1"; sha256="1f07gfmbx80as54mlzdbs2z1vzc78rjy6i6m7zd4jplgcqdcynws"; depends=[ggplot2]; }; nice = derive2 { name="nice"; version="0.4-1"; sha256="1p8vmimiq9sbjvbx6c2wqwwkpnzw4kkdvjry6qyadmm3frwhj5qb"; depends=[]; }; nicheROVER = derive2 { name="nicheROVER"; version="1.0"; sha256="0sa7wfpzkin78vz48vwa5iac82v5l1s3zczdxz8sc2kyg22fj0aw"; depends=[mvtnorm]; }; - nilde = derive2 { name="nilde"; version="1.1-1"; sha256="09r8xfwpz243xmb5l33fw7wf09lw5q9m57anqd2n5wrxfqzzz57h"; depends=[]; }; + nilde = derive2 { name="nilde"; version="1.1-2"; sha256="07m52c4gw0vcyb6pya5z7m4y1kiy2zvh0gnhp80hxc7nhyx0rnqd"; depends=[]; }; nima = derive2 { name="nima"; version="0.5.0"; sha256="1xpzq1mg2l9hnh83hbmxcqz3v0ai62ii7k688i8lpj0xnpsm25pl"; depends=[assertthat devtools ggplot2 ggthemes gridExtra gtools plyr ProjectTemplate scales survival]; }; - nimble = derive2 { name="nimble"; version="0.6-11"; sha256="12vprr5snz05y3k4lq7x51yz1q4crwx5cn42dvbnff4pf7kpj218"; depends=[coda igraph R6]; }; - nipals = derive2 { name="nipals"; version="0.4"; sha256="0h9jxmj44x3lllxk1y2izkslafbiab175qrsxlnfcvhnaj13zsds"; depends=[]; }; + nimble = derive2 { name="nimble"; version="0.6-12"; sha256="1vgyqrcki9z60sxqfyj6smqrq2422g9g95fv5gmmqiwqiv89blxj"; depends=[coda igraph R6]; }; + nipals = derive2 { name="nipals"; version="0.5"; sha256="1zrn1ykl9scd988wj3mm0j6g5q6lq04iwn2ibgap1lrsd0rw1zbf"; depends=[]; }; nitrcbot = derive2 { name="nitrcbot"; version="1.2"; sha256="0lainbw9j5aj9s824afpxdjl3q2f728jfpdfji7kpi9hdg8jixhx"; depends=[dplyr httr jsonlite RCurl]; }; nivm = derive2 { name="nivm"; version="0.3"; sha256="111jkgirgsl1j36xgwi81wzwxial3vdw8mqzi1faldxxd9a2cixm"; depends=[bpcp ssanv]; }; nlWaldTest = derive2 { name="nlWaldTest"; version="1.1.3"; sha256="1cppdz8qvigjdz4sgr1gm2j09zi407xxmryc28zc7ps7rvgy344h"; depends=[]; }; + nlaR = derive2 { name="nlaR"; version="0.3"; sha256="1s54dpz6z7pgj6jn0jjx8s1m318fbk6ra8wrzfvfbz9bcvgp0i2m"; depends=[rappdirs]; }; nlcv = derive2 { name="nlcv"; version="0.3.5"; sha256="1ywnm8a13ifqa1bxnf659h1j6mg9iy02vaszyh9p966ps9c1pjab"; depends=[a4Core Biobase e1071 ipred kernlab limma MASS MLInterfaces multtest pamr randomForest RColorBrewer ROCR xtable]; }; nleqslv = derive2 { name="nleqslv"; version="3.3.2"; sha256="1v9znvncyigw9r25wx2ma0b7ib179b488dl0qsrhp5zrcz7mcjgm"; depends=[]; }; + nlgeocoder = derive2 { name="nlgeocoder"; version="0.1.3"; sha256="13d30kfgfsny5gnn3yjfnclky6yixaa8sg0m689rszqxrvbrj79x"; depends=[jsonlite]; }; nlirms = derive2 { name="nlirms"; version="3.4.4"; sha256="1njyfip377a0f6hf9y32s077b4jv4h8ydbjgnl68yfypxbfn2xyx"; depends=[gridExtra gtable]; }; nlme = derive2 { name="nlme"; version="3.1-137"; sha256="11vyxxc0n36vb8d8g02zr0402ymicvbifwdsqm7gy9iqqnwrn101"; depends=[lattice]; }; nlmeODE = derive2 { name="nlmeODE"; version="1.1"; sha256="1zp1p98mzbfxidl87yrj2i9m21zlfp622dfnmyg8f2pyijhhn0y2"; depends=[deSolve lattice nlme]; }; nlmeU = derive2 { name="nlmeU"; version="0.70-3"; sha256="05kxymgybziiijpb17bhcd9aq4awmp5km67l2py9ypakivi0hc6l"; depends=[nlme]; }; - nlmixr = derive2 { name="nlmixr"; version="0.9.1-3"; sha256="0pl9dm09wc4wa0y64ncqcrrarmimahgcdzf1hz09aj5r5l5pvfvd"; depends=[BH brew cli crayon dparser fastGHQuad ggplot2 lattice lbfgs magrittr Matrix memoise minqa n1qn1 nlme numDeriv PreciseSums R_utils Rcpp RcppArmadillo RcppEigen rex RxODE StanHeaders vpc]; }; + nlmixr = derive2 { name="nlmixr"; version="1.0.0-7"; sha256="1ibj2cxf09jnsf08idrd9q0fxg34i2wp56i4f6q4rq21aswh92qd"; depends=[BH brew cli crayon dparser fastGHQuad ggplot2 lattice lbfgs magrittr Matrix memoise minqa n1qn1 nlme numDeriv PreciseSums R_utils Rcpp RcppArmadillo RcppEigen rex RxODE StanHeaders tidyr vpc]; }; nlmrt = derive2 { name="nlmrt"; version="2016.3.2"; sha256="1g0qq0a933ay65gkp04qgn2wqk6vw79pj2a228c2ski4rcmkjxyn"; depends=[]; }; nlnet = derive2 { name="nlnet"; version="1.2"; sha256="00lcyz5csjj9qbhh7yw0qlbnyv32k0c2dpm23v04n9wkdgs67jy0"; depends=[coin e1071 earth fdrtool igraph randomForest ROCR TSP]; }; - nloptr = derive2 { name="nloptr"; version="1.0.4"; sha256="1cypz91z28vhvwq2rzqjrbdc6a2lvfr2g16vid2sax618q6ai089"; depends=[]; }; + nloptr = derive2 { name="nloptr"; version="1.2.1"; sha256="15yz60kljxwnhm2m3gryjzxl3ynhkhd5jiwc179b1hz6rlzf71hz"; depends=[]; }; nlr = derive2 { name="nlr"; version="0.1-1"; sha256="12j2hp5fgpdz7pvlpykhf9zp1sw1f6vzhh5ykk9b2diaf3l55zsl"; depends=[GA MASS nlme quantreg robcor TSA tseries]; }; nlreg = derive2 { name="nlreg"; version="1.2-2.1"; sha256="08pz3qycnsvz175ppj23i2i0wcif6imi6fc117n8802ln3npwm64"; depends=[statmod survival]; }; nlrr = derive2 { name="nlrr"; version="0.1"; sha256="09wm8s5sadkhkq9pb3fjk66cb2xn8py46w1d7yp7fjhczh31bjsq"; depends=[Hmisc rms]; }; @@ -9053,44 +9444,44 @@ in with self; { nlsmsn = derive2 { name="nlsmsn"; version="0.0-4"; sha256="1gvpy8rq020l64bdw6n7kv354l7gwa2rgxarm6k0mqq7z21fxf58"; depends=[]; }; nlsr = derive2 { name="nlsr"; version="2018.1.28"; sha256="113g656j6zqdqip6dw55pimmwq36xrxgfyix10y3qqn9lxvqrpqq"; depends=[digest]; }; nlsrk = derive2 { name="nlsrk"; version="1.1"; sha256="0yqcsz5pdhqsrd86g0yx8bdac13fbmvg89phj3v4qvla2jfznjba"; depends=[]; }; - nlstimedist = derive2 { name="nlstimedist"; version="1.1.1"; sha256="1222vj2w4f8xh7fkrzlyarr7980a6wj047p5p0nw3cfna3mmhi5b"; depends=[broom dplyr ggplot2 lazyeval minpack_lm nlstools]; }; + nlstimedist = derive2 { name="nlstimedist"; version="1.1.3"; sha256="0wjf18fcm5w82sqza3nmwvqvd14zidvdf72wvkbgfjk4vgcrqj5l"; depends=[broom dplyr ggplot2 lazyeval minpack_lm nlstools]; }; nlstools = derive2 { name="nlstools"; version="1.0-2"; sha256="0mjn1j9fqqgr3qgdr0ki4lfbd0yrkanvya4y2483q3wklqa6qvjc"; depends=[]; }; - nlt = derive2 { name="nlt"; version="2.1-3"; sha256="1j0xrrbr1hvfda8rvnc17lj96m6cz24faxvwn68ilf7j1ab2lkgn"; depends=[adlift EbayesThresh]; }; - nlts = derive2 { name="nlts"; version="0.2-2"; sha256="0bx6xqa3j0k01p43vnv5lcv2pryjzgsak77y1cr9rm2xwqa3j6az"; depends=[acepack locfit]; }; - nmaINLA = derive2 { name="nmaINLA"; version="0.1.1"; sha256="0976jafmdhy2rz5fcarb7hh1vaanm8l2610hk06f5k93xjhypg8j"; depends=[]; }; + nlt = derive2 { name="nlt"; version="2.2-1"; sha256="10wf00qzf28dxjfvv12wsqxlfn6xz15wk8njrzgsgm9px1g6s21f"; depends=[adlift EbayesThresh]; }; + nlts = derive2 { name="nlts"; version="1.0-2"; sha256="0s49qjwavl9ns2746nn4zy4h4dh0njfcvznm3qd61qhs7np9w1db"; depends=[acepack locfit]; }; + nmaINLA = derive2 { name="nmaINLA"; version="0.1.2"; sha256="0layk1pqry2g3xiwmasrnsvmw91sgg7iz15d6iz6hbq4za61hr0k"; depends=[]; }; nmathresh = derive2 { name="nmathresh"; version="0.1.3"; sha256="09pxbizmvdp2l5j1gs0v3xk2lsyclx5rndaw6b4ccn61m3x060ls"; depends=[ggplot2 gridExtra gtable Matrix nnls]; }; nmfem = derive2 { name="nmfem"; version="1.0.3"; sha256="1v808k25g0ph1wvx1j89izfxy9szn0m4sf965d8nkygrk184i9gj"; depends=[d3heatmap dplyr mixtools plyr tidyr]; }; nmfgpu4R = derive2 { name="nmfgpu4R"; version="0.2.5.2"; sha256="05066rgbbp6kj2d67nzf3d1pf32gypz9ammz4ba88yxblydb3cwk"; depends=[Matrix Rcpp SparseM stringr]; }; nmixgof = derive2 { name="nmixgof"; version="0.1.0"; sha256="0cbwrsxrcf8pn4ycn6r0z8jdidw5l6kdvwyrks69fq4pjzx988d6"; depends=[Rcpp unmarked]; }; - nmslibR = derive2 { name="nmslibR"; version="1.0.2"; sha256="1ya3dqnkrlvpil2nypcl3pp6f3x20ip40avnrbqgbylak7yqg9yw"; depends=[KernelKnn Matrix R6 Rcpp RcppArmadillo reticulate]; }; + nmslibR = derive2 { name="nmslibR"; version="1.0.3"; sha256="1m3bq0vg774kqragdx1ydm4q2if3yn9llbd6ybv3c8bmbdb9h405"; depends=[KernelKnn Matrix R6 Rcpp RcppArmadillo reticulate]; }; nmw = derive2 { name="nmw"; version="0.1.4"; sha256="1vj7b2p40x0h3xp45qzar86i9439mj8y3r5hnlbwa025jqdf2g0q"; depends=[numDeriv]; }; - nnTensor = derive2 { name="nnTensor"; version="0.99.1"; sha256="0ai3mqyw24mwl6gcz2jmlvfv59y937n675gram1ajwxdlx76fxff"; depends=[fields plot3D rTensor tagcloud]; }; + nnTensor = derive2 { name="nnTensor"; version="0.99.4"; sha256="1z5dafcnj9cnslxljij5ycmzagvvp27z8b7p6i3hz134z4vbx5jb"; depends=[fields plot3D rTensor tagcloud]; }; nna = derive2 { name="nna"; version="0.0.2.1"; sha256="17cz1jf7iv61wspqldfdwbdjhlr0wq09idkzlivfb8aik5w9f0z5"; depends=[]; }; nneo = derive2 { name="nneo"; version="0.1.0"; sha256="0jaaz15y1csh3bwmzp7mgx86m3f0w3ykzb8qdvg8ak2grxw3wl6a"; depends=[crul data_table fauxpas jsonlite tibble]; }; nnet = derive2 { name="nnet"; version="7.3-12"; sha256="17amqnw9dpap2w8ivx53hxha2xrm0drwfnj32li0xk41hlz548r7"; depends=[]; }; nnetpredint = derive2 { name="nnetpredint"; version="1.2"; sha256="1c6s9wm6vhylwv4xhp2hkllw18zj8hdr17ls9vlxm9qs3wx1v48w"; depends=[RSNNS]; }; nnfor = derive2 { name="nnfor"; version="0.9.2"; sha256="1wxv8s5547spw155rj7nlilsfn5d7m40xpfy87mady93n25pwm3d"; depends=[forecast glmnet MASS neuralnet plotrix]; }; - nngeo = derive2 { name="nngeo"; version="0.1.8"; sha256="0fxiq65kd1q7w95m9hhg18xw3l8czi0li60wkr9h3dakmy2s9j7m"; depends=[geosphere lwgeom RANN Rcpp sf sp units]; }; + nngeo = derive2 { name="nngeo"; version="0.2.2"; sha256="0wjbw1b0ldsl28k3k8i6x0f9msv4a2wwgbvb0wshq0kk0yamanpz"; depends=[geosphere lwgeom RANN Rcpp sf sp units]; }; nnlasso = derive2 { name="nnlasso"; version="0.3"; sha256="1n7karlmgq61z9ywfx9xb5wvmxx40ydpnzzazj1xr70qlv5m0qk4"; depends=[]; }; nnls = derive2 { name="nnls"; version="1.4"; sha256="07vcrrxvswrvfiha6f3ikn640yg0m2b4yd9lkmim1g0jmsmpfp8f"; depends=[]; }; noaastormevents = derive2 { name="noaastormevents"; version="0.1.0"; sha256="1pkfmvp20f6xi2iy7l6c67zspp9f4wkrh7s308hlklms2difhp6m"; depends=[choroplethr choroplethrMaps data_table dplyr forcats ggplot2 htmltab hurricaneexposure lubridate maps plyr RColorBrewer stringr tidyr viridis XML]; }; + nodbi = derive2 { name="nodbi"; version="0.1.0"; sha256="0i82713yhasl5n5zdncpsfplvfm77dvxjvhb4vvlsnfwk364gadf"; depends=[data_table jsonlite]; }; nodeHarvest = derive2 { name="nodeHarvest"; version="0.7-3"; sha256="0nh3g50rk9qzrarpf29kijwkz9v60682i0ag77j2ipyvhhbpwpkc"; depends=[quadprog randomForest]; }; nodiv = derive2 { name="nodiv"; version="1.2.0"; sha256="0bdhlq5nd169hbwnik4z843xzh5bbmahrvyxj54626zxyvf1fmfb"; depends=[ape picante raster sp vegan]; }; nofrills = derive2 { name="nofrills"; version="0.3.0"; sha256="18hryq6clywlr2f45az6ryslkkarly45nacln4bwk6ip0yfl5s98"; depends=[rlang]; }; noia = derive2 { name="noia"; version="0.97.1"; sha256="0yldfmnb4ads4s9v9cj1js8zf1w1hxasqq6qjyzwknmvmp7kh62h"; depends=[]; }; noise = derive2 { name="noise"; version="1.0"; sha256="1a48s9vpz3nc058966lad8hydmg7z0vbzfwcf6nxc9g3c8mw4nig"; depends=[preprocessCore]; }; nomclust = derive2 { name="nomclust"; version="1.1.1106"; sha256="17hb89k72sw3ya0wm3n95mpx4vj7mpl4mzs8qwl2773dh2mcjgjq"; depends=[cluster dummies]; }; - nomine = derive2 { name="nomine"; version="1.0.0"; sha256="1yaxhac002fxcyiz5x562fnhrsq9h9nx0qmw4rykjsc5l2qbi9gd"; depends=[httr RCurl]; }; - nomisr = derive2 { name="nomisr"; version="0.3.0"; sha256="0ia1i3gzp7wp8hf57arajbf7063m4jpbb2hl0l03rwg1z4afb7jd"; depends=[dplyr httr jsonlite readr rlang rsdmx tibble]; }; + nomisr = derive2 { name="nomisr"; version="0.4.0"; sha256="1ns05jpq20ql3pqandfil7zln4b9lls4vpscnaai3mxf9434ga9x"; depends=[dplyr httr jsonlite readr rlang rsdmx tibble]; }; nomogramEx = derive2 { name="nomogramEx"; version="3.0"; sha256="16235rwblnzn8k53817llwy2pzhnpifh6ij159nxymjm8ar9qpbp"; depends=[pracma rms]; }; noncensus = derive2 { name="noncensus"; version="0.1"; sha256="0cfj17bfzddfshhhzv2ijhrp9ylcscmsysswjcsjfxmy3gbkd00q"; depends=[]; }; noncompliance = derive2 { name="noncompliance"; version="0.2.2"; sha256="1lcybgj95z7lz7p26xbsdiv0vvms4ab4f8kad0pclacf1l43v0j6"; depends=[data_table Rcpp]; }; noncomplyR = derive2 { name="noncomplyR"; version="1.0"; sha256="1a9m6r9cizw42nmy24jdsrsbllg5z84fs8b239axnh1fxzskg2qy"; depends=[MCMCpack]; }; nonlinearICP = derive2 { name="nonlinearICP"; version="0.1.2.1"; sha256="1m9a1f0yrbjl0nx2l7r76pyi78b2bxj8v4jx92yga91f975mw6np"; depends=[caTools CondIndTests data_tree randomForest]; }; - nonlinearTseries = derive2 { name="nonlinearTseries"; version="0.2.3"; sha256="1pcah255hh3lqabxgjb5fsaap4s2d92lvxw9a48l1p4dkmm1lbsx"; depends=[Matrix Rcpp rgl TSA tseries]; }; - nonmem2R = derive2 { name="nonmem2R"; version="0.1.9"; sha256="06irvlyhfimcx3izbfivvrxc9xbiwvqajvl5n47krgbkbd4r4ag0"; depends=[ggplot2 lattice latticeExtra MASS mvtnorm]; }; - nonmemica = derive2 { name="nonmemica"; version="0.8.2"; sha256="1nz0sq8a1xgpasii2hpxiz79d501nnfs6awaqpp8m8lviimnhv68"; depends=[csv dplyr encode lazyeval magrittr metaplot rlang spec tidyr xml2]; }; - nonnest2 = derive2 { name="nonnest2"; version="0.5-1"; sha256="02pflg6frvsq7azwcr660qj9mpj4q3kjx6xr6v5lshg77mjfhgdg"; depends=[CompQuadForm lavaan mvtnorm sandwich]; }; + nonlinearTseries = derive2 { name="nonlinearTseries"; version="0.2.5"; sha256="0vpa8r8b7j2d19da49cw4jg8zm74kvg9npwf4aqwxw8ndkfgpyj0"; depends=[Matrix Rcpp RcppArmadillo rgl TSA tseries zoo]; }; + nonmem2R = derive2 { name="nonmem2R"; version="0.1.10"; sha256="05ipdkvryx21kqc2kajy1xmpd9w33k8w0z6zq786kp9ks76pmfrb"; depends=[ggplot2 lattice latticeExtra MASS mvtnorm splines2]; }; + nonmemica = derive2 { name="nonmemica"; version="0.8.3"; sha256="07n6cz2vlg5mk0wvbi86j2v9v12vxpll6zkc6f4nf7cb700r9kwa"; depends=[csv dplyr encode lazyeval magrittr metaplot rlang spec tidyr xml2]; }; + nonnest2 = derive2 { name="nonnest2"; version="0.5-2"; sha256="1bq44qqmm59j91m0sny4xnqmxqlga4cm48qdsw8xfs3x19xwmxk6"; depends=[CompQuadForm lavaan mvtnorm sandwich]; }; nonpar = derive2 { name="nonpar"; version="1.0.1"; sha256="0pxks3nga7jrcvq0pzr1axj3a9xvzky836fl7966a09ws1vff7i4"; depends=[]; }; nonparaeff = derive2 { name="nonparaeff"; version="0.5-8"; sha256="1kkn68m7cqlzx3v539cjxw3x5a2y86lvmyv2k98s87m3yvqg0gdk"; depends=[gdata geometry Hmisc lpSolve psych pwt rms]; }; nonrandom = derive2 { name="nonrandom"; version="1.42"; sha256="0icm23hw593322z41wmjkwxqknh2pa9kpzbrch7xw1mhp93sd5ll"; depends=[lme4]; }; @@ -9102,7 +9493,7 @@ in with self; { nord = derive2 { name="nord"; version="0.0.1"; sha256="0ajymjn2xw7zik62nhjp11g8bkvsqhhsrzi3bl2k70y544wbl3kn"; depends=[ggplot2]; }; nordklimdata1 = derive2 { name="nordklimdata1"; version="1.2"; sha256="0c2hbh3qy8nrs275lxpzfgqsfgwp81m4kv0layvnjj09fcybm54x"; depends=[]; }; norm = derive2 { name="norm"; version="1.0-9.5"; sha256="01j1h412yfjx5r4dd0w8rhlf55997spgb6zd6pawy19rgw0byp1h"; depends=[]; }; - normalp = derive2 { name="normalp"; version="0.7.0"; sha256="1s12x2qln3s4bbqsm4p3cq4g6461z73r858g6ym1awamhbmncnrl"; depends=[]; }; + normalp = derive2 { name="normalp"; version="0.7.0.1"; sha256="1gvbqirvb0q6c3831qqm5x7nj7rls1v7nfj7mf1nmwg5b0ljakp0"; depends=[]; }; normalr = derive2 { name="normalr"; version="1.0.0"; sha256="1ahrg188vbhnrnwag0zi6lcb3g0y1mbz06sl3j1wyllq5l918cc7"; depends=[magrittr MASS purrr rlang shiny]; }; normtest = derive2 { name="normtest"; version="1.1"; sha256="073r2mwfs6c4vqh8921nlyygl0f20nhv997s0iwf00d3jckkc4pp"; depends=[]; }; normwhn_test = derive2 { name="normwhn.test"; version="1.0"; sha256="1kr45bfydk40hgdg24i2f28cdaw65hg9gmsgv4lsvvr2m3r74vi6"; depends=[]; }; @@ -9116,7 +9507,7 @@ in with self; { notifyme = derive2 { name="notifyme"; version="0.3.0"; sha256="0b6xrv6c4id7rs0dafg96pl4brn4yma5xh9wjz78ql44bg3w5s91"; depends=[dplyr httr magrittr]; }; nowcasting = derive2 { name="nowcasting"; version="0.1.3"; sha256="1b74rqz7y4g5zyrbmns27v60jpv13s5aax9dyiyvnk2y7ng1kp5x"; depends=[corpcor DBI httr lubridate magic matlab Matrix RCurl RMySQL xts zoo]; }; noweb = derive2 { name="noweb"; version="1.0-4"; sha256="17s65m1m8bj286l9m2h54a8j799xaqadwfrml11732f8vyrzb191"; depends=[]; }; - np = derive2 { name="np"; version="0.60-8"; sha256="17h67a510wh83800ri6g02wvznrlhigxni8shyijz1iaxcpk8k4j"; depends=[boot cubature quadprog quantreg]; }; + np = derive2 { name="np"; version="0.60-9"; sha256="1z4jcpx8bbgwslv42wrphfd1qfq965qjn0kmfxm5f6hbbycahcgy"; depends=[boot cubature quadprog quantreg]; }; npIntFactRep = derive2 { name="npIntFactRep"; version="1.5"; sha256="14ms66ppzb4jjsa3fparic6gdn913f6wv2ccjyb02j1ahs4iaa4g"; depends=[ez plyr]; }; npROCRegression = derive2 { name="npROCRegression"; version="1.0-5"; sha256="09ngfj0bd9cp19lpwsbknp2y71x36k03ph84bmf67wm1q2na7f93"; depends=[lattice]; }; nparACT = derive2 { name="nparACT"; version="0.8"; sha256="0zwhz52j526n3xd21s7kghjaby56a8g296bkkc6scaa23zn1xg4b"; depends=[ggplot2 stringr zoo]; }; @@ -9130,7 +9521,7 @@ in with self; { nplplot = derive2 { name="nplplot"; version="4.5"; sha256="1dpbs0jb34gv0zj528357z1j2pwahjbp04rm7jir6qk0jhyaxxgh"; depends=[]; }; nplr = derive2 { name="nplr"; version="0.1-7"; sha256="1h3qv9dlw2gx8km3slyvrl588nif1n87df8xwmm6p75ziqhn2f56"; depends=[]; }; npmlda = derive2 { name="npmlda"; version="1.0.0"; sha256="1dr25an7cac89jyb8zhmj3ry6lq7sh7zxci1injplnk4gzy17mc5"; depends=[]; }; - npmlreg = derive2 { name="npmlreg"; version="0.46-3"; sha256="1k1l977g1a86918k6w7h2m8145x7adb8r7q2s4jky8s9ixa14hz3"; depends=[statmod]; }; + npmlreg = derive2 { name="npmlreg"; version="0.46-5"; sha256="1f0bzccmral2y56aih37gmi6mjww6wmp2a8z6yxm501fgj2lgzfc"; depends=[statmod]; }; npmr = derive2 { name="npmr"; version="1.1"; sha256="1ss8ypvv6qcdxv7l3szivliwmhidmzi3572p3nz96ysndf56akl4"; depends=[]; }; npmv = derive2 { name="npmv"; version="2.4.0"; sha256="04lfks2rlax59gxdnbgkpmk2vaax718z6hkgsvmyxf52iby6rvlr"; depends=[Formula]; }; nppbib = derive2 { name="nppbib"; version="1.0-0"; sha256="075jb13zckkh66jwdmdlq4d2drjcc3lkj26px3w79b91223yymf2"; depends=[]; }; @@ -9138,7 +9529,8 @@ in with self; { npregfast = derive2 { name="npregfast"; version="1.5.1"; sha256="0s9ci3nybzwykrgi9z2rqp6l15mqbxf759ks0clvkbm7wxv3whk5"; depends=[doParallel foreach ggplot2 mgcv sfsmisc shiny shinyjs wesanderson]; }; nprobust = derive2 { name="nprobust"; version="0.1.3"; sha256="1zr89myhamcxzk7j04rxcc4mbi86pf09kl70p8niklm0b3wmsjzj"; depends=[ggplot2 Rcpp RcppArmadillo]; }; nproc = derive2 { name="nproc"; version="2.1.1"; sha256="0wpny7c1n9mmv1yywlws8gjbidkrikvcqcckrxpba9avjw2c5df8"; depends=[ada e1071 glmnet MASS naivebayes randomForest ROCR tree]; }; - npsf = derive2 { name="npsf"; version="0.3.1"; sha256="1mv2dzn3gc7b9ynpw8dv22xd31igg4hmkgrds12n9920pghkya44"; depends=[Formula Rcpp]; }; + nprotreg = derive2 { name="nprotreg"; version="1.0.0"; sha256="06n82i5m7sgfj759zdwwh8fqybkbchvnaaqcds64m6hbms592bh3"; depends=[expm]; }; + npsf = derive2 { name="npsf"; version="0.4.1"; sha256="0vl02ysfmbxfzzbrjhiz8j129waz9cnpmds978fmv08l6wsjr3mi"; depends=[Formula Rcpp]; }; npsm = derive2 { name="npsm"; version="0.5"; sha256="12jq6ygp3di5rknh7izrr3bxvpn6bqnj3jhfxzf29yf0bd86hzqk"; depends=[plyr Rfit]; }; npsp = derive2 { name="npsp"; version="0.5-3"; sha256="0ck6iymfc73bzrifdc2sagcliz1yakqk1yv67a3ykha996jsrx99"; depends=[quadprog]; }; npsr = derive2 { name="npsr"; version="0.1.1"; sha256="1fzvilzjg9z05991sr1s1bdp17kfl6d1580qdllk8is9ac06np0v"; depends=[gmp infotheo MASS]; }; @@ -9146,29 +9538,31 @@ in with self; { npsurv = derive2 { name="npsurv"; version="0.4-0"; sha256="1wq4c9yfha5azjhrn40iiqkshmvh611sa90jp3lh82n4bl9zfk20"; depends=[lsei]; }; nricens = derive2 { name="nricens"; version="1.6"; sha256="0fpgp6k3mhb0qxbx6248k9bscnmlzwj70mqh631a1nc4cpdjvw3q"; depends=[survival]; }; nsRFA = derive2 { name="nsRFA"; version="0.7-14"; sha256="0sd3br2a5jf6mqbxk8s2i7px9vi9bk3pl8bd5884k40xqcj77irs"; depends=[]; }; - nsROC = derive2 { name="nsROC"; version="1.0"; sha256="0c99z8kknbrnbyyv7p79sj848aq7b5n4m4r7v1yrcs61ackrdn2n"; depends=[sde survival]; }; + nsROC = derive2 { name="nsROC"; version="1.1"; sha256="1fi7k61fja98kpn528jprjdycwz01rnqm368m82anxh21k7q4s1m"; depends=[sde survival]; }; + nsapi = derive2 { name="nsapi"; version="0.1.1"; sha256="06xf2p6f911vwpzky47r35fjgjvlhp13p9pf1zlvjrv66kdw8vbp"; depends=[crul xml2]; }; nscancor = derive2 { name="nscancor"; version="0.6.1-25"; sha256="183kvzlln5lhmi51dm0skq1165c3hhy1yz5h2g7nxwqk2b4p23xj"; depends=[]; }; nscprepr = derive2 { name="nscprepr"; version="0.1.1"; sha256="1rd32zywrzyxz6hpn9s6cwjlg8q8rz3cc0p3b5gan8bicx0ilwjc"; depends=[dplyr lubridate stringr]; }; - nse = derive2 { name="nse"; version="1-00.17"; sha256="16zam539ir29m9ixyim9bqnf3sdy8aaaaly3wf96i3csgysf8pjc"; depends=[coda mcmc mcmcse np Rcpp sandwich sapa]; }; + nse = derive2 { name="nse"; version="1.19"; sha256="107ri9325ga4kgvs5a3j3698dc3m4v28cb02ypc4dan6f3fa9h8i"; depends=[coda mcmc mcmcse np Rcpp sandwich]; }; + nseval = derive2 { name="nseval"; version="0.4"; sha256="18avir5zllvm2sbi9616k7dlb8yxhvnbji7xshr4kcfvy1fvn2ia"; depends=[]; }; nsga2R = derive2 { name="nsga2R"; version="1.0"; sha256="04jj0a3isfc348vg46il5x9l33cr7xawz5w0mm4pwr6djhd8nfhx"; depends=[mco]; }; nsgp = derive2 { name="nsgp"; version="1.0.5"; sha256="0piajjz3r71dnjw7lwpjhbaygxcrbbxfvhf8p3n2izyr2pw5fml9"; depends=[MASS]; }; nspmix = derive2 { name="nspmix"; version="1.4-0"; sha256="1cd133ncnr4g0n6w4c44q6mda8y1n7cfmsgy1x1kczvwp7cm9kk2"; depends=[lsei]; }; nsprcomp = derive2 { name="nsprcomp"; version="0.5.1-2"; sha256="1zlc1ximx96f235c0l8qfs6vbp1kpnbf943wxsfahnnlnxvwi59f"; depends=[]; }; - nucim = derive2 { name="nucim"; version="1.0.0"; sha256="0fyapw6f5wkybr4mwmqpk9wy349j5sa4q26pci1bsy4ly2wf9wx6"; depends=[bioimagetools EBImage fields stringr]; }; - nullabor = derive2 { name="nullabor"; version="0.3.1"; sha256="0anwla6x9y2i7yd6r0yi1xhy0zfqwfpp5h1f18gji11nmiva9d81"; depends=[dplyr fpc ggplot2 MASS moments plyr]; }; + nucim = derive2 { name="nucim"; version="1.0.6"; sha256="0bw9a2xz2w5jlr2qlbia6jfm2yp09n3gzg8a630p1ks75xvlmkbx"; depends=[bioimagetools EBImage fields stringr]; }; + nullabor = derive2 { name="nullabor"; version="0.3.5"; sha256="0hnrawf8s2g0xjc9kh2p3pbdnbai7q71z7arab5mnrz6qbiyym34"; depends=[dplyr forecast fpc ggplot2 magrittr MASS moments purrr rlang tibble tidyr tidyverse tsibble]; }; numDeriv = derive2 { name="numDeriv"; version="2016.8-1"; sha256="07ni52rwiap4wilfz94w5mrqaxr59axxmgn57857ip4p6qkiss0v"; depends=[]; }; numGen = derive2 { name="numGen"; version="0.1.1"; sha256="1y41wq31r8126dz1sj23smq2k6v9yqczq4ddgzqb73dsrx9dmmc0"; depends=[]; }; numKM = derive2 { name="numKM"; version="0.1.0"; sha256="0pnwb7skp5jx5ibgfkympq59m9sf71gvk5zc0fwik539vrzfykdf"; depends=[survival]; }; - numOSL = derive2 { name="numOSL"; version="2.5"; sha256="0wrddd5yvilp66p2m9jbchd0spb55zgl3k63zf3yq3dc8jdrvzvy"; depends=[]; }; + numOSL = derive2 { name="numOSL"; version="2.6"; sha256="03h1p56650x4my5vq5jlmjsz5xj0w2j75qfr08rh7nr38dwgp1k8"; depends=[]; }; numbers = derive2 { name="numbers"; version="0.7-1"; sha256="1k5a24pnjhn3h330q0s7ivk2v5dsjmg2xwlhfinzixihnwhc12xy"; depends=[]; }; numbersBR = derive2 { name="numbersBR"; version="0.0.2"; sha256="0ihxlny745gpz1ngq862rydn1zwn8zni1xw9mmgw8hkylsrnjfq8"; depends=[stringr]; }; numform = derive2 { name="numform"; version="0.4.0"; sha256="09vim4ajnnkdf27ag5j8pj7p8qyfakfh3ar1dki8bqzms2d7bkcm"; depends=[]; }; nutshell = derive2 { name="nutshell"; version="2.0"; sha256="1v11g5wqyxnj29b7akl0cwa34hcqs79ijbiv735pg3df4ggyrzvm"; depends=[nutshell_audioscrobbler nutshell_bbdb]; }; nutshell_audioscrobbler = derive2 { name="nutshell.audioscrobbler"; version="1.0"; sha256="10fvc5d22gnfb0bkgbww48f0vvcaja96g5gfv85kap939j11172j"; depends=[]; }; nutshell_bbdb = derive2 { name="nutshell.bbdb"; version="1.0"; sha256="19c4047rjahyh6wa6kcf82pj09smskskvhka9lnpchj13br8rizw"; depends=[]; }; + nvmix = derive2 { name="nvmix"; version="0.0-1"; sha256="13pp664n5f06gavny586xrwm1n18jndr0hlqx5fdy68n6py0vz9r"; depends=[qrng]; }; nws = derive2 { name="nws"; version="1.7.0.1"; sha256="1fn92n6brjhh8hpvhax7211cphx2cn0rl99kjqksig6z7242c316"; depends=[]; }; nycflights13 = derive2 { name="nycflights13"; version="1.0.0"; sha256="10b05cxpiysvlif59lriprxcyhgk59d3qmcpwwzk88wy6bicl9hn"; depends=[tibble]; }; - nyctaxi = derive2 { name="nyctaxi"; version="0.0.1"; sha256="187fs819g45f8irx2s9bgwnzr00lyamfv2ra88kyb8q2cq1icwwy"; depends=[DBI dplyr etl rlang stringr]; }; nzelect = derive2 { name="nzelect"; version="0.4.0"; sha256="19kcbq454yg9g76ix7v3nibgw2203d7vv6f2d6d2zkcc0h08bjm7"; depends=[]; }; nzpullover = derive2 { name="nzpullover"; version="0.3.0"; sha256="0b3mz5i58m48fa1x7gv4l3gqj0gvrar201ph2l1gkbcnfmazwjp8"; depends=[]; }; oXim = derive2 { name="oXim"; version="1.2.2"; sha256="1hi4ps36amvgqgj64yc3cvy4sx32z1az6lk5yy1sciy6074k5byb"; depends=[gstat imagine R_matlab sp]; }; @@ -9188,24 +9582,26 @@ in with self; { observer = derive2 { name="observer"; version="0.1.2"; sha256="1027827k57qb4xppx0xxxffd1s3n7pz754irdx3v1v3piix8xi8m"; depends=[bazar bit dplyr lazyeval magrittr tibble]; }; oc = derive2 { name="oc"; version="1.01"; sha256="12idrh4jxxq28lgqzr6jzgrvmmwysh5amzhmmaqn3yz49i17gcaf"; depends=[pscl]; }; occ = derive2 { name="occ"; version="1.1"; sha256="1aka29qqwbd494kvi15yyyqkb9hks4ky2gcvykxhx2drm2fnsn4g"; depends=[]; }; - oce = derive2 { name="oce"; version="0.9-23"; sha256="0k5h6k4y9bas2aqwkh1dkxmwgx4d41hxy87zfih5iq8ff61d03rr"; depends=[gsw testthat]; }; + oce = derive2 { name="oce"; version="1.0-1"; sha256="0wn49xp7zvfipxvx0jdbqqldinbq0ccsqipljsidc3gzhf7jh67p"; depends=[gsw Rcpp testthat]; }; oceanmap = derive2 { name="oceanmap"; version="0.1.0"; sha256="1kkjc213nn2ks7cqzchbmjvyp9hci8qndv8migpmyf5vjbm7d297"; depends=[abind extrafont fields lubridate mapdata maps maptools ncdf4 plotrix raster sp]; }; ocedata = derive2 { name="ocedata"; version="0.1.3"; sha256="0lzsyaz8zb6kiw86fnaav2g2wfdhyicxvm81ly5a9z4mjch3qj02"; depends=[]; }; ockc = derive2 { name="ockc"; version="1.0"; sha256="0chzrs3ipa2518r4d35z4fxffgq12p1mwj0hzkxw19gdgq6aa8s7"; depends=[flexclust modeltools]; }; ocomposition = derive2 { name="ocomposition"; version="1.1"; sha256="0fk8ia95yjlvyvmjw7qg72piqa40kcqq9wlb3flc6a81pys1ycb5"; depends=[bayesm coda]; }; odbc = derive2 { name="odbc"; version="1.1.6"; sha256="146phrsks0hfd1bfxx452kkq7ximk3fwjz9lqg9fdykar5sr6vjj"; depends=[BH bit64 blob DBI hms Rcpp]; }; odds_converter = derive2 { name="odds.converter"; version="1.4.8"; sha256="09s8pg55gpsxmrbimzg5rsr1n07la93781sar6vab5p9zn9zxgx4"; depends=[]; }; - oddsratio = derive2 { name="oddsratio"; version="1.0.2"; sha256="0s9w5iqcabkc7lqdh27nmg7xnw2jpwik5djjlqxb6xgabzls97d6"; depends=[cowplot ggplot2 MASS mgcv]; }; + oddsratio = derive2 { name="oddsratio"; version="1.0.3"; sha256="1kdqnai8hbhxg9gjn9j7zgm8mw4bd765jkdrwrk9q65fpvc62f5k"; depends=[cowplot ggplot2 MASS mgcv]; }; odeintr = derive2 { name="odeintr"; version="1.7.1"; sha256="0wfb5lgv10p0qyfbn9hdg14bda37v43lpgbwv6nbw63zzbsbazqi"; depends=[BH Rcpp]; }; odk = derive2 { name="odk"; version="1.5"; sha256="0fcnr4c1clwx1sk6fgg4cx506gdi90n2h05g0i47p4s5bra0qwwl"; depends=[gsheet openxlsx]; }; - odpc = derive2 { name="odpc"; version="1.0.0"; sha256="1mhak9drp0a7h1yrbk08cs00hbvkfkj8r1y6klhr40sdych4q506"; depends=[forecast gdpc Rcpp RcppArmadillo]; }; - odr = derive2 { name="odr"; version="0.7.3"; sha256="07jfd809wv92ijgw1r1nq9516zi2rkf3ik243br42glf6lszn19p"; depends=[]; }; + odpc = derive2 { name="odpc"; version="2.0.0"; sha256="1lpd7x2vq8qdgf0nag0sqzf1jpbig52zr3glk17n7cl50v2m19ii"; depends=[doParallel foreach forecast Rcpp RcppArmadillo]; }; + odr = derive2 { name="odr"; version="1.0.0"; sha256="0niadinljx5pph329dgixivdc9s1l27ik9755fbfhmplhj92ihi2"; depends=[]; }; oec = derive2 { name="oec"; version="2.7.8"; sha256="0qi5xkyh5xgwcivihnc9wv96lzhdzlcz4zv08pvpxf7dx1qhafrj"; depends=[curl dplyr jsonlite magrittr purrr readr rlang stringr]; }; oem = derive2 { name="oem"; version="2.0.8"; sha256="08j9y9vq31skvdpg0kyqj50d77aijd2d95vcwm92df5vcvw9bpwz"; depends=[BH bigmemory foreach Matrix Rcpp RcppArmadillo RcppEigen]; }; - officer = derive2 { name="officer"; version="0.3.1"; sha256="1qpy2srk4sqmnqmpaivgp5j5nc3b58mjbibzkq5nw784jni13jmj"; depends=[base64enc digest htmltools magrittr R6 Rcpp uuid xml2 zip]; }; + ofGEM = derive2 { name="ofGEM"; version="1.0"; sha256="0xdkl8k12an9pdy6i5nay4m2iakrwsp0lr3zl8gphii75j0ywz7k"; depends=[CompQuadForm forestplot MASS]; }; + officer = derive2 { name="officer"; version="0.3.2"; sha256="14b6ii9h3fi5g8ja929mfhxps9r7x78flqjdy437y9aygkhmiz2i"; depends=[base64enc digest htmltools magrittr R6 Rcpp uuid xml2 zip]; }; oglmx = derive2 { name="oglmx"; version="3.0.0.0"; sha256="13axmhbqhv4kkcdsdmp9r7p0d0kyqlsaqgyyllbkxlxb4hfz79b6"; depends=[maxLik]; }; - ohtadstats = derive2 { name="ohtadstats"; version="1.1.1"; sha256="1d011xcrn9zhb4pf9wkwlynvz3kkk95yk2l5qs352ra1dhki7b6k"; depends=[lattice]; }; + ohtadstats = derive2 { name="ohtadstats"; version="2.0.0"; sha256="0vi0hi90l8p80kf0769iidlaq9j11myhxrj41lvxr70q4h4slr8j"; depends=[lattice]; }; oii = derive2 { name="oii"; version="1.0.2.1"; sha256="1n41hikn53ikyynsravg127cw5csa8s0s1l63w5hym7c6j625ya5"; depends=[Deducer gmodels rapportools]; }; + ojUtils = derive2 { name="ojUtils"; version="0.1.0"; sha256="0q1w99wfahi8n2278njbxk3qn3xd6q2rhqr7afc904x9xpxadazc"; depends=[Rcpp testthat]; }; okcupiddata = derive2 { name="okcupiddata"; version="0.1.0"; sha256="1l04rr4yr73a6q2am9ylyr5prf347hkf2jx735w78rsb6472kbaq"; depends=[]; }; okmesonet = derive2 { name="okmesonet"; version="0.1.5"; sha256="1kzyzmg702ayzphn9jsk64m51mlnz37ylxiwq5gsr23vaiida680"; depends=[plyr]; }; olctools = derive2 { name="olctools"; version="0.3.0"; sha256="1gbchwynvmryarz32f24v56kj57h7x6nrrm878fkjkpq140cqwzz"; depends=[Rcpp]; }; @@ -9214,10 +9610,11 @@ in with self; { omics = derive2 { name="omics"; version="0.1-5"; sha256="1y2x33mfgq98nglhvpr1wq1v6nfiq4njy2yac47x72rpwxsj9vb1"; depends=[lme4 pheatmap]; }; ompr = derive2 { name="ompr"; version="0.8.0"; sha256="1nmd5wa1g2xzmwqfqf882bxcrmkxbb5b414cbbzvmqzfs34yk6bl"; depends=[data_table lazyeval Matrix progress Rcpp rlang]; }; ompr_roi = derive2 { name="ompr.roi"; version="0.8.0"; sha256="1cbrchvpd31lxpxvw2l3q9k5jmffarb1shca8kwm76y5a6zxxq63"; depends=[Matrix ompr ROI slam]; }; + omu = derive2 { name="omu"; version="1.0.2"; sha256="03mj5xk447gadsnvqrm97cjcyfq4xzkgc46kw85gishv7w9qmqrk"; depends=[dplyr ggfortify ggplot2 KEGGREST magrittr plyr reshape2 stringr tidyr]; }; oncomodel = derive2 { name="oncomodel"; version="1.0"; sha256="1jyyq9znffiv7rg26mjldbwc5yi2f4f8npsd2ykhxyacb3g96fp1"; depends=[ade4]; }; onehot = derive2 { name="onehot"; version="0.1.1"; sha256="1cdsz007wr054k5phvihhg4qx0fc039k2s6484m92kws8mb2ziix"; depends=[]; }; onemap = derive2 { name="onemap"; version="2.1.1"; sha256="0j9c0ynwpzyr548n72wzmmk8gi52qvxlxgzqzn8g6n4v5zmzlkhy"; depends=[fields ggplot2 maps Rcpp reshape2 tkrplot]; }; - onewaytests = derive2 { name="onewaytests"; version="1.7"; sha256="1lly2pxw08mmm4gqgj3wxa9ayhf90fyqjhnj8hcvr408k9p7bgsb"; depends=[car ggplot2 moments nortest]; }; + onewaytests = derive2 { name="onewaytests"; version="1.9"; sha256="15zs39krrf7i5g0bp830il3cihwbichsd6swhjxp53j77hwcb0hy"; depends=[car ggplot2 moments nortest]; }; onion = derive2 { name="onion"; version="1.2-7"; sha256="17jx7saxcsahyyivln4v9fzzcmidy6ygjd9n81skv5jpr491zkgk"; depends=[]; }; onlinePCA = derive2 { name="onlinePCA"; version="1.3.1"; sha256="08qivsfnwz5vp089lv9czsaz3nfi42kn9yhgzf27dji18y2xscic"; depends=[Rcpp RcppArmadillo RSpectra]; }; onlineVAR = derive2 { name="onlineVAR"; version="0.1-0"; sha256="1hqriwrlxhbi5v5wpqxfvvcb6np1iaarb3zf84ykfzi4llqqgz24"; depends=[lattice]; }; @@ -9229,19 +9626,19 @@ in with self; { oompaBase = derive2 { name="oompaBase"; version="3.2.6"; sha256="0lighs2546nyhpgbjsn4k53c7jw6xyla5b82v8jp3l1sqxj68a3s"; depends=[cluster]; }; oompaData = derive2 { name="oompaData"; version="3.1.1"; sha256="0by9qfxlx6fdmp12qnphlli5hdn5balvx4ckg64fw6vwa291g7b0"; depends=[]; }; openCR = derive2 { name="openCR"; version="1.2.0"; sha256="1wz31rnvdz1s253krf423ipkmfsxia66d5adnbyp3r59mc48yh1k"; depends=[abind MASS nlme plyr R2ucare Rcpp RcppParallel secr stringr]; }; - openEBGM = derive2 { name="openEBGM"; version="0.6.0"; sha256="0xzcdahfxdk1zjq6019yvr2mlhyqxbsqx6vd4w95mjq9h3bd5vmr"; depends=[data_table ggplot2]; }; + openEBGM = derive2 { name="openEBGM"; version="0.7.0"; sha256="1a4jcc15995id2fh22v18f1wrwlknfx3mlh6chjl0b93z60aad6k"; depends=[data_table ggplot2]; }; openNLP = derive2 { name="openNLP"; version="0.2-6"; sha256="1173cng877sg6ynbs3csfnn956wwrq3yldhhzfbqdsz35draganj"; depends=[NLP openNLPdata rJava]; }; openNLPdata = derive2 { name="openNLPdata"; version="1.5.3-4"; sha256="0j45rh9qki8r5wavaysrfsvb3wc3x8jjicqff2yi0r34j58xvlv8"; depends=[rJava]; }; openSTARS = derive2 { name="openSTARS"; version="1.1.0"; sha256="1cjws49r22cmdax136zcy3k35yzbajkm6pyfibgcw2iqdxy1vcxg"; depends=[data_table progress raster rgdal rgrass7 sf sp SSN]; }; - openVA = derive2 { name="openVA"; version="1.0.4"; sha256="1lfc8h64y7zlcyf30pw0zrmzrjh4x4kkij0awmwwzhw402cvb16r"; depends=[ggplot2 InSilicoVA InterVA4 InterVA5 nbc4va Tariff]; }; + openVA = derive2 { name="openVA"; version="1.0.7"; sha256="1hv0i2h9vw2l4gzsz31apc1w7k8rkrr5szxzfxhznchyv0sr9625"; depends=[cli crayon ggplot2 InSilicoVA InterVA4 InterVA5 purrr Tariff]; }; openadds = derive2 { name="openadds"; version="0.2.0"; sha256="1jb8zd3rpxfkjkg895iab6m4cfi53p5vy3nnpjkgq7ym6499qjcv"; depends=[crul dplyr jsonlite maptools rappdirs readr tibble xml2]; }; - openair = derive2 { name="openair"; version="2.4-2"; sha256="1kaq0ww3829qh6wsnaa2asyyqmqhdgm9am70g0vphf7lp9vjk9x1"; depends=[cluster dplyr hexbin lattice latticeExtra lubridate mapproj MASS mgcv purrr RColorBrewer Rcpp rlang tidyr]; }; + openair = derive2 { name="openair"; version="2.5-0"; sha256="1zsgqzp5rpyg4jr0vqk5jn1p0lba2lagsvw6idnwb1kjw82y82fd"; depends=[cluster dplyr hexbin lattice latticeExtra lubridate mapproj MASS mgcv purrr RColorBrewer Rcpp rlang tidyr]; }; opencage = derive2 { name="opencage"; version="0.1.4"; sha256="1lqs38lml73axsjlsjkmcsb2irgs40mjrx2cn3k0bjb63qyb9hf5"; depends=[dplyr httr jsonlite memoise]; }; - opencpu = derive2 { name="opencpu"; version="2.0.5"; sha256="1bs2z3y2zc3aqzfjh6bq3qrpzm106f5xhw7lbyng1bpcp4rch6y3"; depends=[brew curl devtools evaluate httpuv jsonlite knitr mime openssl protolite rappdirs sendmailR sys webutils zip]; }; + opencpu = derive2 { name="opencpu"; version="2.0.8"; sha256="1x5z1galq8m45fr2jnik4gx28gn2cdwaj2871c7cx5rang6rv1jp"; depends=[brew curl devtools evaluate httpuv jsonlite knitr mime openssl protolite rappdirs sendmailR sys webutils zip]; }; opendotaR = derive2 { name="opendotaR"; version="0.1.4"; sha256="17cygsw3nkg6zincfrcdh1509rlz3n5zrv9wvv7mjngm61sn79nf"; depends=[dplyr jsonlite lubridate]; }; openintro = derive2 { name="openintro"; version="1.7.1"; sha256="059azlasdkmp8f54qpjf3mq5dyqakw0dgx0kx85wfdmhq38zal5n"; depends=[]; }; - opensensmapr = derive2 { name="opensensmapr"; version="0.4.1"; sha256="1yq0fxlfb203di2y0n23zfy4xyjy1ij52s4kp1fn44pb3gmqhndm"; depends=[digest dplyr httr magrittr]; }; - openssl = derive2 { name="openssl"; version="1.0.1"; sha256="1qyql5gpwf88bkm1qarjhbqbq4hn6w0d8j4pxb5x7i96is30ap30"; depends=[]; }; + opensensmapr = derive2 { name="opensensmapr"; version="0.5.0"; sha256="0bv03p2fprgkqg2vm6ydqi5wjswkjlxwwmkk3r6lq2m4xq909d4r"; depends=[digest dplyr httr lazyeval magrittr purrr readr]; }; + openssl = derive2 { name="openssl"; version="1.0.2"; sha256="1djfpnphkcxx8idk5rjfzg8r8dnqsgc0shh2pw8lns5hap2wc5rc"; depends=[]; }; opentraj = derive2 { name="opentraj"; version="1.0"; sha256="13nqal96199l8vkgmkvl542ksnappkscb6rbdmdapxyi977qrgxk"; depends=[doParallel foreach maptools openair plyr raster reshape rgdal sp]; }; openxlsx = derive2 { name="openxlsx"; version="4.1.0"; sha256="1n7z22pm78xa77fvn77kdn68az6xzxk36y11sqf0w6h6adri4yxb"; depends=[Rcpp zip]; }; opera = derive2 { name="opera"; version="1.0"; sha256="0p2wg3srg088l420ykrq0wqvzh1mp6l753rdw35f7kdmaj08mqfq"; depends=[quadprog quantreg RColorBrewer]; }; @@ -9257,34 +9654,36 @@ in with self; { optbdmaeAT = derive2 { name="optbdmaeAT"; version="1.0.1"; sha256="1y1mvcyjihpj1wgjmifhmd10717wr1srp7h87azs4gfypgsiqchn"; depends=[igraph MASS Matrix]; }; optextras = derive2 { name="optextras"; version="2016-8.8"; sha256="03wqz16q8kn0ndk241h541fa0g5y0nrfg17vph85cm5xvzdd14cc"; depends=[numDeriv]; }; optiRum = derive2 { name="optiRum"; version="0.40.1"; sha256="1kl9mzh53pwhrxbn89dsjjpfji7k8vmysscd1qd9sw7vqdan8g6x"; depends=[AUC data_table ggplot2 knitr plyr scales stringr XML]; }; - optiSel = derive2 { name="optiSel"; version="2.0.1"; sha256="0bk2yf7wlkf2v76dybcqvqjy6n4cr72h0l05yfxba3zl8fw7r7na"; depends=[data_table doParallel ECOSolveR foreach kinship2 magic MASS Matrix nadiv optiSolve pedigree plyr pspline purrr quadprog Rcpp RcppArmadillo reshape2 stringr]; }; + optiSel = derive2 { name="optiSel"; version="2.0.2"; sha256="0k3651h7ih59w13jzkbh8m5pddi1g1zci5rn9dm3b873yjr2nalx"; depends=[data_table doParallel ECOSolveR foreach kinship2 magic MASS Matrix nadiv optiSolve pedigree plyr pspline purrr quadprog Rcpp RcppArmadillo reshape2 stringr]; }; optiSolve = derive2 { name="optiSolve"; version="0.1"; sha256="1wnpj7z0vqf91gzgz6r2ympnljq4mczxnnyk3sq7gvf6df4ic2m1"; depends=[alabama cccp MASS Matrix nloptr plyr Rcpp Rcsdp shapes stringr]; }; opticut = derive2 { name="opticut"; version="0.1-2"; sha256="1j479wa7mlp62c2y7shha1w7ybhfy8wvjfaz27kmwd1f61ma1g0l"; depends=[betareg MASS mefa4 pbapply pscl ResourceSelection]; }; optifunset = derive2 { name="optifunset"; version="1.0"; sha256="18pvdl04ln1i0w30ljdb3k86j27zg2nvrn3ws54c1g6zg9haqhbg"; depends=[]; }; optigrab = derive2 { name="optigrab"; version="0.7.3"; sha256="1vd4b6mh4a137nvsbpx71jibfd67va1m8iya1gasqiflm6qzszcx"; depends=[magrittr stringi]; }; optim_functions = derive2 { name="optim.functions"; version="0.1"; sha256="1la3v8yd9cdichp3mka4x86hr9lynh6qfg7h9ab6cwijw6kzkn6g"; depends=[lhs randtoolbox stringr]; }; - optimParallel = derive2 { name="optimParallel"; version="0.7-2"; sha256="1b705gn0f3m3cn1hy5ga6qazvl2kvgc9dmnqky2px1zbkw2n3qy0"; depends=[]; }; + optimParallel = derive2 { name="optimParallel"; version="0.7-4"; sha256="0415lz5qrhb423h55plws1hjf1fsddg2qf9phm1srvd24dvz2khw"; depends=[]; }; + optimStrat = derive2 { name="optimStrat"; version="1.1"; sha256="0wlkk0wmhzkxkam0d6lzr5s6hyb51fnvvd64syffgr084ivxymra"; depends=[shiny]; }; optimbase = derive2 { name="optimbase"; version="1.0-9"; sha256="0ivz24kf3yacgq5bl3s3az1pcyhsz0cza5f8vdksy5gchwqplm8n"; depends=[Matrix]; }; optimization = derive2 { name="optimization"; version="1.0-7"; sha256="09s62ax3w8zijfp2cmh2lvdqbl3nijbjkwq4n3icasi53lzg2179"; depends=[colorspace Rcpp]; }; optimr = derive2 { name="optimr"; version="2016-8.16"; sha256="02dgwkcjhf6ciwb6x6gyk7nn4v2jras7l1icfd4pjbypiapwnck9"; depends=[numDeriv optextras Rcgmin Rvmmin setRNG]; }; optimsimplex = derive2 { name="optimsimplex"; version="1.0-7"; sha256="1if32133556zwmijlz6085fg1h65442hy03lzia0ahap3yndqfqy"; depends=[optimbase]; }; optimus = derive2 { name="optimus"; version="0.2.0"; sha256="01njyjfrm6kjwx2qq41c0hsgxzydnrmr3538cpbfdn5i0z5blgyx"; depends=[mvabund ordinal]; }; - optimx = derive2 { name="optimx"; version="2013.8.7"; sha256="0pbd7s02isj24npi4m1m1f008xqwzvwp3kn472wz8nmy4zrid30s"; depends=[BB dfoptim minqa numDeriv Rcgmin Rvmmin setRNG svUnit ucminf]; }; + optimx = derive2 { name="optimx"; version="2018-7.10"; sha256="0npzgb5ky3p2iky4917grmysawh7mb5gwz4i7ssmh73ypqnndfhk"; depends=[numDeriv]; }; optional = derive2 { name="optional"; version="1.1"; sha256="13ajzybylw0q0x6yy6i8qr6l1ar53cyl708zgqaqaj0lkj183zhz"; depends=[magrittr]; }; optiscale = derive2 { name="optiscale"; version="1.1"; sha256="1c263w9df66m7lgvzpdfm2zwx9nj8wcdpgh5gijachr2dzffmrp2"; depends=[lattice]; }; optismixture = derive2 { name="optismixture"; version="0.1"; sha256="0nacfbqlnzajp1hfhf0yzm2d86fxpp4kw2zy33q8k2d4sr56bird"; depends=[Matrix mvtnorm]; }; - optmatch = derive2 { name="optmatch"; version="0.9-9"; sha256="04w6ma1f09rjlz2qalfqk894pdkvqszr13n010y7015b3dsyqnkk"; depends=[digest Rcpp RItools survival]; }; + optmatch = derive2 { name="optmatch"; version="0.9-10"; sha256="1jnvk9r7jc8w5rg8xvhbhj0wmy0l1hhjm8iwyf703939p4xc5z71"; depends=[digest Rcpp RItools survival]; }; optparse = derive2 { name="optparse"; version="1.6.0"; sha256="1d7v5gl45x4amsfmzn5zyyffyqlc7a82h01szlnda22viyxids0h"; depends=[getopt]; }; optpart = derive2 { name="optpart"; version="2.3-0"; sha256="125b9sfdk4bdcj1vq5rxlrskv1zra31x8d96pdxnqvcnkmwxm4zh"; depends=[cluster labdsv MASS plotrix]; }; optrcdmaeAT = derive2 { name="optrcdmaeAT"; version="1.0.0"; sha256="16g4612mwyfsckn6l71fbrjnnjv4yvnac1cccbrn3k8jh07qgb1h"; depends=[igraph MASS Matrix]; }; - optrdd = derive2 { name="optrdd"; version="1.0.1"; sha256="1nvrl04vg5ayrqqf6n3sb8jp37xifl5inh9nyr7pv6szckih6cd2"; depends=[CVXR Matrix quadprog]; }; + optrdd = derive2 { name="optrdd"; version="1.0.2"; sha256="04c0dz68bs9h7l7bw9l0fahbbr2d0472xcq23pj91c8953n2mkak"; depends=[CVXR glmnet Matrix quadprog]; }; optrees = derive2 { name="optrees"; version="1.0"; sha256="1zqpjii8dsfs98n58qpif81ckvyxkr0661svhlbgzi19xb2vszqs"; depends=[igraph]; }; + optweight = derive2 { name="optweight"; version="0.2.0"; sha256="0qpm5i9anzmv03cgdpk3r7pr6gg9l32hrnbrrd65cmkvf5wdxcyj"; depends=[ggplot2 Matrix rosqp]; }; opusminer = derive2 { name="opusminer"; version="0.1-0"; sha256="1m4gsjylz58pbmhgcy4l9hqdsgy8ra1zg0d3rb6h2qiwfyfm0yh4"; depends=[arules Matrix Rcpp]; }; orQA = derive2 { name="orQA"; version="0.2.1"; sha256="0vivjrpcbql42y078gi91kfpfdpv73j23jkiv8fpazzwzdi8ydqq"; depends=[genefilter gtools nlme Rcpp]; }; ora = derive2 { name="ora"; version="2.0-1"; sha256="0albxqma220rnrpfdq3z9cawr83q1a0zzczbbcy4nijjm4mswphy"; depends=[DBI ROracle]; }; orca = derive2 { name="orca"; version="1.1-1"; sha256="1wd5nh2vh6j1rp78hbw17qipi67f0wimrbkiarak8f7k5pfiy1zn"; depends=[]; }; orclus = derive2 { name="orclus"; version="0.2-6"; sha256="0d78mn2vl2yxlvdswyxkxp9zg59b8cvfksz9m56kddn79aps1ikl"; depends=[]; }; - orcutt = derive2 { name="orcutt"; version="2.2"; sha256="0mwfbbsn39nla083p845xbbgh3y8kkrg0q735kap64jf4pgcyac7"; depends=[lmtest]; }; + orcutt = derive2 { name="orcutt"; version="2.3"; sha256="0pj7pqzbcg4gp35nsz3avyawmx69dgj0l2w0x8ypw5qwl4zhmnyk"; depends=[lmtest]; }; ordBTL = derive2 { name="ordBTL"; version="0.8"; sha256="09x3zfmss4fsh3rjghgmpv8y34dnkz4mw696b3k3nvlgk55a1423"; depends=[caret gtools VGAM wikibooks]; }; ordDisp = derive2 { name="ordDisp"; version="1.0.1"; sha256="1vjki73h8933z36ikwmjn84ldz154mahp2jkd9cbj5n6xsi47fnw"; depends=[VGAM]; }; ordPens = derive2 { name="ordPens"; version="0.3-1"; sha256="0yzf3qzi4p7xqimihjvr0wkdvj3sy9n3wc86bf4bjbavniq6m69r"; depends=[grplasso mgcv RLRsim]; }; @@ -9294,22 +9693,22 @@ in with self; { orderedLasso = derive2 { name="orderedLasso"; version="1.7"; sha256="0vrh89nrmpi8xscvambcb1y70gqqi5819a2gxh02h4pnyjn8axql"; depends=[ggplot2 Iso Matrix quadprog reshape2]; }; orderstats = derive2 { name="orderstats"; version="0.1.0"; sha256="0a3ga0cjryvbininspsx5wzc96s3fza06s3d5fhbllbixz0rap4a"; depends=[]; }; ordiBreadth = derive2 { name="ordiBreadth"; version="1.0"; sha256="04faqhas1p9lxhghd4xq07yq1nxv7ns18avhvkql7sy5a9g7bfs1"; depends=[vegan]; }; - ordinal = derive2 { name="ordinal"; version="2018.4-19"; sha256="04fpm4jsjfd90ig2rzd11jafkip74814b60ixis0sii2gr9c8zxb"; depends=[MASS Matrix ucminf]; }; - ordinalClust = derive2 { name="ordinalClust"; version="1.2.1"; sha256="1035471ni5f8129w23kkj7263p5pa9jlihqdq2skda410lj50vnk"; depends=[progress Rcpp RcppArmadillo]; }; + ordinal = derive2 { name="ordinal"; version="2018.8-25"; sha256="03cv9hcrw8j3lhamzhz8sk2p3ns4cw9z41x49h301k2b3pajv43h"; depends=[MASS Matrix numDeriv ucminf]; }; + ordinalClust = derive2 { name="ordinalClust"; version="1.3.1"; sha256="10wk2brp8a3k1pjsl7wify4ki59ad4vbpqgmbi5va99hfnywz5ml"; depends=[Rcpp RcppArmadillo RcppProgress]; }; ordinalCont = derive2 { name="ordinalCont"; version="1.3.0"; sha256="0zi9cfvkb811hhcplp159zpnmmk4rs0nid19gi4g9g3dgn9pa296"; depends=[boot]; }; - ordinalForest = derive2 { name="ordinalForest"; version="2.1"; sha256="1ancr7xdwhbqq3rj5hijrkjbrcaih8rqcx5r41mykrrp1k1s55dd"; depends=[combinat ggplot2 Rcpp]; }; - ordinalNet = derive2 { name="ordinalNet"; version="2.4"; sha256="0c9k3p62d482sl0vg94xm6hllk2mic2nd1c5m4vhci5ycavqzdd3"; depends=[]; }; + ordinalForest = derive2 { name="ordinalForest"; version="2.2"; sha256="1cfcdk7nndw7z1shq966pdk6448hdvfqc6c1z4fwrrlkp75gnjr5"; depends=[combinat ggplot2 nnet Rcpp]; }; + ordinalNet = derive2 { name="ordinalNet"; version="2.5"; sha256="1lx8jacidb6irwb2mwsc75dy90fnvrpgwcg8s2wzkvql1lasc6wy"; depends=[]; }; ordinalRR = derive2 { name="ordinalRR"; version="1.0"; sha256="07gihg8hppxa7bp5wxcshqawj3vkzicmdsrnjyrasr3glv08b9lj"; depends=[rjags]; }; - ordinalgmifs = derive2 { name="ordinalgmifs"; version="1.0.4"; sha256="1s8f8fpiyyxxqlcwa5pn2aj1iggf5r1q7zkvzsik6265krcsbqn6"; depends=[survival]; }; - ore = derive2 { name="ore"; version="1.6.1"; sha256="0hy1xm03zbmd336g9jjrkdsx1z7ai32jvj1hk8a7bj9wqb5rl8g5"; depends=[]; }; + ordinalgmifs = derive2 { name="ordinalgmifs"; version="1.0.5"; sha256="0i66i0qwsc52yj4hpfzk4d8v2nwdd4zr7zgqlxvsk3n8vi65lnqf"; depends=[survival]; }; + ore = derive2 { name="ore"; version="1.6.2"; sha256="1l1ziljgm5gwjhvjq42wi5vcwbxlaj5dl9w8bhz0wh8vx4ajj07m"; depends=[]; }; ores = derive2 { name="ores"; version="0.3.1"; sha256="12war455cfcn2llig7pkx05b70dp5y7warjq03ayqq6i7c945mhb"; depends=[httr]; }; orgR = derive2 { name="orgR"; version="0.9.0"; sha256="1q4qbwnbhmja8rqiph7g7m4wxhzhk9mh91x1jgbnky8bs4ljdgrx"; depends=[data_table ggplot2 ggthemes lubridate stringr]; }; orgutils = derive2 { name="orgutils"; version="0.4-1"; sha256="1yc3avhq3786his7nd60zfbzd9inkfrfz938r8378z59zbb1mzqq"; depends=[textutils]; }; orientlib = derive2 { name="orientlib"; version="0.10.3"; sha256="1qi46hkz73b8722zc3w6wvsq1ydlk37yxn9rd1dqygqbs1svkmvv"; depends=[]; }; origami = derive2 { name="origami"; version="1.0.0"; sha256="0692n4javr0lwxcd0b83sbbhxbmxxs41sjvlsq5bc5l7n140qaca"; depends=[abind data_table future future_apply listenv]; }; originr = derive2 { name="originr"; version="0.3.0"; sha256="1r4w8gilr25gdqm3slviwas3s7qkpiyv4ifzp7qkby6vrdswnngb"; depends=[crul data_table jsonlite taxize xml2]; }; - orloca = derive2 { name="orloca"; version="4.5"; sha256="1zkd80b8rqy3x389c5pwsh0k8q6hy9bg4vvqs2xigxbprz4gyzl7"; depends=[png ucminf]; }; - orloca_es = derive2 { name="orloca.es"; version="4.5"; sha256="0lnv565c7g69649481w3rlnx0yya7bw9fkpwim9bs639flwh6w96"; depends=[orloca]; }; + orloca = derive2 { name="orloca"; version="4.6"; sha256="1mhm4m0qmhhb1kca2s5z630f52h3a5ms16aqxrq9a8j9nyd65xh4"; depends=[knitr png ucminf]; }; + orloca_es = derive2 { name="orloca.es"; version="4.6"; sha256="1yfsvihm8p4ggdfam50i2xg7dy7khww5qqk6g4lry3m1icwx6vsy"; depends=[orloca]; }; oro_dicom = derive2 { name="oro.dicom"; version="0.5.0"; sha256="05dmhfglp76apyilwicf3n2ylyjhp1gq6b9bnzsiiblpjnfpia43"; depends=[oro_nifti]; }; oro_nifti = derive2 { name="oro.nifti"; version="0.9.1"; sha256="19w9dzyfmfgxgxb5i0l06b6gzqksx879iwicfs76fwmb1q2ph540"; depends=[abind bitops RNifti]; }; oro_pet = derive2 { name="oro.pet"; version="0.2.6"; sha256="1dczii7knh9241ksswxk9zg1d69mhk2ilrk4kjv7cj9nfm8fgmja"; depends=[minpack_lm msm oro_dicom oro_nifti]; }; @@ -9323,10 +9722,10 @@ in with self; { osd = derive2 { name="osd"; version="0.1"; sha256="1py9p15nrcydr8w9ilxkxabiz9zlqnls8xn9avjkxd8x6602jx6p"; depends=[JADE nnls]; }; oshka = derive2 { name="oshka"; version="0.1.2"; sha256="02hglpq5lknq93zbcf219lhnhppzgygkhxqixb15f89rxf9fczgs"; depends=[]; }; osmar = derive2 { name="osmar"; version="1.1-7"; sha256="0q6d8nw7d580bnx66mjc282dx45zw9srczz90b520hjcli4w3i3r"; depends=[geosphere RCurl XML]; }; - osmdata = derive2 { name="osmdata"; version="0.0.7"; sha256="0gpb8anvm9wmhvdkirhclkyppqz1sd5siclszigff11fw4bxnwj3"; depends=[curl httr jsonlite lubridate magrittr Rcpp rvest sp xml2]; }; + osmdata = derive2 { name="osmdata"; version="0.0.8"; sha256="0hhfnraxjj54z5p3lnpvklhpmdhihs9lgfb9dm3s9h7kjcknf6x3"; depends=[curl httr jsonlite lubridate magrittr Rcpp rvest sp xml2]; }; osmose = derive2 { name="osmose"; version="0.1.1"; sha256="0fiijnrvvydhj6j9yb02rn5sg8arcpj3jz977m2zwjgqy878cffg"; depends=[rlist stringr]; }; osmplotr = derive2 { name="osmplotr"; version="0.3.0"; sha256="0w45riwwjigh1bxf9gx0wdj2yhdizwi6ydprp83pss2z9wph66yb"; depends=[curl e1071 ggm ggplot2 httr osmdata rgeos sp spatstat]; }; - osqp = derive2 { name="osqp"; version="0.3.1"; sha256="1q7f009xbl15prsn6l18fr307a7z76rw39z6fj380nliq6s5s56z"; depends=[Matrix R6 Rcpp]; }; + osqp = derive2 { name="osqp"; version="0.4.1"; sha256="0v1sg914l1xz2f2crgwy2pp9k72ak2k1qmqix20j2akqmlvr39p2"; depends=[Matrix R6 Rcpp]; }; osrm = derive2 { name="osrm"; version="3.1.1"; sha256="14rf5m2pm5w414v2l1dvd6vlvirms93l8rkfbmgcvxwxmc52b187"; depends=[gepaf jsonlite raster RCurl rgeos sp]; }; osrmr = derive2 { name="osrmr"; version="0.1.29"; sha256="1mkc39v56m7b89nbjzs50kzz8w1i1950gciiw7iyqpdj6g2knwdx"; depends=[assertthat bitops R_utils rjson stringr]; }; otinference = derive2 { name="otinference"; version="0.1.0"; sha256="1l75jjnkyk8yzaw9zyk45jq9ys304i6pzm2xd5apxrb1jk75a3li"; depends=[MASS Rglpk sm transport]; }; @@ -9337,12 +9736,14 @@ in with self; { outbreaker = derive2 { name="outbreaker"; version="1.1-8"; sha256="0przz78jzkwl580w83p0aigaykfki2hdzprwqic7dy6yxnpqlpm3"; depends=[adegenet ape igraph]; }; outbreaker2 = derive2 { name="outbreaker2"; version="1.0.1"; sha256="1v49i9z4kx9l485ib5q91s4z6r03lyijzjrr9zyjgham59rncyij"; depends=[ape ggplot2 magrittr Rcpp visNetwork]; }; outbreaks = derive2 { name="outbreaks"; version="1.3.0"; sha256="1k0g9x6wvdw8lkpjiv8z1ijp6pg5hri3gawx7zfpnm05g6ncvg81"; depends=[]; }; + outcomerate = derive2 { name="outcomerate"; version="1.0.1"; sha256="07mwml7r98qjgvrp938sqf7klyspz110583j0zwb72j69n4whmrj"; depends=[Rdpack]; }; outliers = derive2 { name="outliers"; version="0.14"; sha256="0vcqfqmmv4yblyp3s6bd25r49pxb7hjzipiic5a82924nqfqzkmn"; depends=[]; }; outreg = derive2 { name="outreg"; version="0.2.2"; sha256="04f1x7mxq4swbd7bfwjjgx4838jm6qj4piaighmhcscwrdkxa1cp"; depends=[magrittr reshape2 sandwich stringr tidyr]; }; overlap = derive2 { name="overlap"; version="0.3.2"; sha256="1j3m6ir1chdz0si2fhcw6gs7c9h09bv0chz18rpzxsywww6d4rzy"; depends=[]; }; overlapping = derive2 { name="overlapping"; version="1.5.0"; sha256="1xqpkyxpdzcvq7s2hzkbnfddffjfs1xrxhrkvl5i4qv1czdsphjn"; depends=[ggplot2]; }; overlapptest = derive2 { name="overlapptest"; version="1.0"; sha256="1p5xbqbl1kpvx7rjb335k7hfc8i9b13p2r2rr6rrjfa8zs74smml"; depends=[spatstat]; }; owmr = derive2 { name="owmr"; version="0.7.2"; sha256="0206i5zzmfjdd43qziis6kqc0zsvn0l7v5sspjrywjxw2gyjfmwb"; depends=[httr jsonlite magrittr]; }; + ows4R = derive2 { name="ows4R"; version="0.1-0"; sha256="1a27h63spy46ms7fgh2vl659znp5g55d1hsk6py6lgfa6hc2f1dx"; depends=[geometa httr openssl R6 rgdal sf XML]; }; oxcAAR = derive2 { name="oxcAAR"; version="1.0.0"; sha256="19inf2bcpfj4jzfym1v5f1w5fkmcycz5jrfc2hf0wsvixy53lfxa"; depends=[jsonlite stringr]; }; oz = derive2 { name="oz"; version="1.0-21"; sha256="0p4r8qbpv7q6vad940540pd3lk79pyfj41h2cn22hsy1j0va1qbv"; depends=[]; }; p2distance = derive2 { name="p2distance"; version="1.0.1"; sha256="1ims8i5z5k97kjpdysgx8g7lgvnvf7amahcrssw7bk38bvbxawni"; depends=[]; }; @@ -9352,10 +9753,11 @@ in with self; { pCalibrate = derive2 { name="pCalibrate"; version="0.1-1"; sha256="04a7dmf9sjw44y53i469f8fjm8as2vwr0pgk4s91l63pxdqnjvfl"; depends=[epitools exact2x2 MCMCpack]; }; pGLS = derive2 { name="pGLS"; version="0.0-1"; sha256="1rlk8q09sikf4vpzsx0c7s6qqh2hxf8dy2bgcm4nnkbv2nfjz438"; depends=[MASS]; }; pGMGM = derive2 { name="pGMGM"; version="1.0"; sha256="1hkczz38g8a8253jm8vhm8948fs91g6b2rfzkz47srkkby9ksa4x"; depends=[JGL MASS mvtnorm]; }; + pGPx = derive2 { name="pGPx"; version="0.1.1"; sha256="0b3pjrk7496nlw1cv5m6yfp02c663452z67y21yhhm26b17nrldv"; depends=[DiceKriging KrigInv pbivnorm pracma randtoolbox Rcpp RcppArmadillo rgenoud]; }; pKSEA = derive2 { name="pKSEA"; version="0.0.1"; sha256="1k9javxbhx28hf5k3i66ggqwlws2w9qwp01g8f7jmyp92pxr3qqd"; depends=[]; }; pMineR = derive2 { name="pMineR"; version="0.31"; sha256="1j71dcldzmk4kzspx4v5s3vqqkllgwkckfm1g145qgg26c1gyc6l"; depends=[cluster DiagrammeR stringr XML]; }; pRF = derive2 { name="pRF"; version="1.2"; sha256="17srabk7mam16rdzc5g9ggdrhjjk8wibny40gxvgzkv7qgq7m80x"; depends=[dplyr ggplot2 multtest permute randomForest reshape2]; }; - pROC = derive2 { name="pROC"; version="1.12.1"; sha256="05ad69a6fxy9k903cw3h4q59ch2jv6qfg9yjdbw3cgiiazcafrlj"; depends=[ggplot2 plyr Rcpp]; }; + pROC = derive2 { name="pROC"; version="1.13.0"; sha256="0ain17clympkx09ym7gydylcd93096dxzqx1qzci310yq2l7fknm"; depends=[ggplot2 plyr Rcpp]; }; pRSR = derive2 { name="pRSR"; version="3.1.1"; sha256="1irx95b7cwvx3gpn9brjjn4k947m8frz542r18nilc9f1159mb3s"; depends=[]; }; pSI = derive2 { name="pSI"; version="1.1"; sha256="0cvw38dqqlyx7cpl27hq33f5xns2d0019lyr98pwndcnbp09mx0b"; depends=[gdata]; }; pa = derive2 { name="pa"; version="1.2-1"; sha256="1pfgzxirkb0p8f6smjlrbp1qpsh0vsvqf306cvldaj9zx8cw0q9f"; depends=[ggplot2]; }; @@ -9367,9 +9769,9 @@ in with self; { packagedocs = derive2 { name="packagedocs"; version="0.4.0"; sha256="0zw9ana7s42ardphhdaklba02yjj1v8gliq4l98397mjmzc6f4xd"; depends=[crayon devtools digest evaluate highlight htmltools lazyrmd magrittr rmarkdown stringr whisker yaml]; }; packagefinder = derive2 { name="packagefinder"; version="0.0.7"; sha256="030s8r2k0q3vls6vndmdz8a45kqrqx9whqvrcbh3f6xgy1vhs1hs"; depends=[formattable httr jsonlite pander stringr]; }; packagetrackr = derive2 { name="packagetrackr"; version="0.1.1"; sha256="0xjq27j7bd7lps0vp9gdinxn19wl10k2cp9wb2xjih7p6l0wd57g"; depends=[dplyr httr magrittr rappdirs]; }; - packcircles = derive2 { name="packcircles"; version="0.3.2"; sha256="1hqzvhk8zm95vsrvf6bifxkgdgik8hixylslfvzpfcq378zi97yb"; depends=[Rcpp]; }; + packcircles = derive2 { name="packcircles"; version="0.3.3"; sha256="0gik0splf48zfl40297nh7lbgvd2qqlci99wv841mfy7858ai933"; depends=[Rcpp]; }; packrat = derive2 { name="packrat"; version="0.4.9-3"; sha256="0d42x4qvz9hs7s5sl2lhklsdc8imrnp2k800xdagrpjilww9jac7"; depends=[]; }; - pacman = derive2 { name="pacman"; version="0.4.6"; sha256="1vdak1hv3j44dsj6cckzc1a86dg933jqhxdys8fyxacmk101l388"; depends=[devtools]; }; + pacman = derive2 { name="pacman"; version="0.5.0"; sha256="0gb0fsm8rm81j22q93fqx8q6zgjq3w1pv791ac0smc1a45blfab1"; depends=[remotes]; }; paco = derive2 { name="paco"; version="0.3.2"; sha256="0qf692fqlq0d7hh9yllywaswmj5spy6q1r67nzkhgyh311nhjh6c"; depends=[plyr vegan]; }; pacotest = derive2 { name="pacotest"; version="0.3"; sha256="135637bidfx71xay6c69lfjvr4i0v3ckgkg0fi838p24is6icbix"; depends=[ggplot2 gridExtra numDeriv Rcpp RcppArmadillo VineCopula]; }; pact = derive2 { name="pact"; version="0.5.0"; sha256="043hbydj5f6889xrfsrn8jrgid2nnbsz6d7jpn4hywwa97snw4ny"; depends=[glmnet survival]; }; @@ -9378,6 +9780,7 @@ in with self; { pafdR = derive2 { name="pafdR"; version="1.0"; sha256="1yimsd4h23hcf752p5flda3dqk8hgn6qm9k0pmbapxj4jbsw14w5"; depends=[curl exams stringr]; }; pagenum = derive2 { name="pagenum"; version="1.1"; sha256="0908rlr9sd1a2qwz0idw8ccxhji73sk24gyrdl071lpnd1rs2wl7"; depends=[]; }; pageviews = derive2 { name="pageviews"; version="0.3.0"; sha256="031y67nqqvf3fa2273m7z2cldda0ijh63qwkh4gis3hz9hfril0v"; depends=[curl httr jsonlite]; }; + painter = derive2 { name="painter"; version="0.1.0"; sha256="0qr6p13h50rlavcsamxmijfr4dfrbv1k088m28qf8a4gam3ap85b"; depends=[]; }; paintmap = derive2 { name="paintmap"; version="1.0"; sha256="1qw5725yjymxmfhffqjx4lbmzj437c7qwr8xrzmf52f0m28nl3vk"; depends=[]; }; pairedCI = derive2 { name="pairedCI"; version="0.5-4"; sha256="03wf526n3bbr2ai44zwrdhbfx99pxq1nbng9wsbndrdg2ji4dar2"; depends=[]; }; pairheatmap = derive2 { name="pairheatmap"; version="1.0.1"; sha256="1awmqr5n9gbqxadkblpxwcjl9hm73019bwwfwy1f006jpn050d6l"; depends=[]; }; @@ -9385,13 +9788,14 @@ in with self; { pairwise = derive2 { name="pairwise"; version="0.4.3-2"; sha256="1kb73jsfyp1daqbrmpwh8l9j28fgiapimfwdypz82m46wza1qgww"; depends=[]; }; pairwiseCI = derive2 { name="pairwiseCI"; version="0.1-26"; sha256="0dislkyvzckkxl2ccdpalyfbp4pfs6yvzwr175h2xcbzm5jjf35j"; depends=[boot coin MASS MCPAN mcprofile]; }; palaeoSig = derive2 { name="palaeoSig"; version="1.1-3"; sha256="1zm8xr7fpnnh6l4421vjavi6bg44iars3mna4r5fw3spmbswyv7b"; depends=[MASS mgcv rioja TeachingDemos vegan]; }; - palasso = derive2 { name="palasso"; version="0.0.1"; sha256="00vwp0xbnp8fj8g7qn81r4j15vwp26pjjh51hc8syi8l7457alhm"; depends=[glmnet Matrix survival]; }; + palasso = derive2 { name="palasso"; version="0.0.2"; sha256="19syj2qlmnrbz75hhlrslh04k8cmi3bh8r15yq8gwy1mr9kwq3i3"; depends=[CorShrink glmnet Matrix survival]; }; paleoMAS = derive2 { name="paleoMAS"; version="2.0-1"; sha256="1hhb5wbj4m3ch8wnvd1zkl5bk6wa9nl6jl1dhm4z6yqkh29yn9z6"; depends=[lattice MASS vegan]; }; paleoTS = derive2 { name="paleoTS"; version="0.5-1"; sha256="18f5lkgzvndc8s7w7d7dfdlqf37adrmzabpwkavjw1zkpb1dga8c"; depends=[doParallel foreach iterators mnormt]; }; paleobioDB = derive2 { name="paleobioDB"; version="0.5.0"; sha256="195w0jzg8bhlqbsd3shi161wqr9cff6q85ik0x8w4laazzxs0jhr"; depends=[gtools maps plyr raster RCurl rjson scales]; }; paleofire = derive2 { name="paleofire"; version="1.2.2"; sha256="0mg03k3yf68js580ljvwcn7xfl0m1s408hb34a9h3mh3a5knm2zc"; depends=[GCD ggplot2 lattice locfit plyr raster rgdal]; }; paleomorph = derive2 { name="paleomorph"; version="0.1.4"; sha256="05l55miahkmj8ikq8qz20y6kgxvxmdf04kji898i7fp8qyj4vfpa"; depends=[]; }; - paleotree = derive2 { name="paleotree"; version="3.1.0"; sha256="1f90f6m6qgywxa134dv8rd43660vkr9n2s82wn0iwq7w89gqlcj2"; depends=[ape phangorn phytools]; }; + paleotree = derive2 { name="paleotree"; version="3.1.3"; sha256="05669s0lmd9azzpgn5iqayp49lg6sn34z4bqizcbpjviw6jwh72c"; depends=[ape phangorn phytools]; }; + paletteer = derive2 { name="paletteer"; version="0.1.0"; sha256="02d0k74bxdjphw34v4vvnc2dd04cvm9y6m0x8ngfhqmgv4nfsjx9"; depends=[ggthemes jcolors oompaBase palr pals rlang scico viridisLite]; }; palettetown = derive2 { name="palettetown"; version="0.1.1"; sha256="1kjj1sqib1ns7895plp8c7h317pxwbyxi2shjkcgadkcsv2yjsxn"; depends=[]; }; palinsol = derive2 { name="palinsol"; version="0.93"; sha256="0k29sl2j7yf4yc0dhb047rxwg9np9l6pdwv6wyb4j80yc07vc9am"; depends=[gsl]; }; palm = derive2 { name="palm"; version="1.1.1"; sha256="1fbc5ri5k152ww3cajjjclcas22mfvypfn3hdpkkmf307lvjaja3"; depends=[gsl minqa mvtnorm R6 Rcpp spatstat]; }; @@ -9403,18 +9807,18 @@ in with self; { pampe = derive2 { name="pampe"; version="1.1.2"; sha256="092n04nrp886kd163v32f5vhp9r7gnayxzqb6pj57ilm5w1yrcsk"; depends=[leaps]; }; pamr = derive2 { name="pamr"; version="1.55"; sha256="1hy3khb0gikdr3vpjz0s245m5zang1vq8k93g7n9fq3sjfa034gd"; depends=[cluster survival]; }; pan = derive2 { name="pan"; version="1.6"; sha256="1dk3jjj826p7xrz10qz04vyc068xnypg7bp0pj4c32z3da0xzh5d"; depends=[]; }; - pander = derive2 { name="pander"; version="0.6.1"; sha256="1axknd1isfjg4wj5b1smvl7qr4wvjdw1kikrghjnp73xh0glr7pp"; depends=[digest Rcpp]; }; + pander = derive2 { name="pander"; version="0.6.2"; sha256="0gd7rqkpbraznip8jmri9lqa8ajg1sryyplhd6m633wg91whiipi"; depends=[digest Rcpp]; }; pandocfilters = derive2 { name="pandocfilters"; version="0.1-1"; sha256="18n155rkbr3gq5lsb0bh1v1v0z0r6xr2ald3nh7xh3v9qwxpmsz1"; depends=[jsonlite]; }; panelAR = derive2 { name="panelAR"; version="0.1"; sha256="1ka2rbl9gs65xh2y2m4aqwh5qj4szibjy101hqfmza9wmdh25gpq"; depends=[car]; }; - panelView = derive2 { name="panelView"; version="1.0.1"; sha256="1ianff9clc0318nk0xplnslfqi5sxn773qcvxv3axj247994xpay"; depends=[ggplot2 gridExtra]; }; + panelView = derive2 { name="panelView"; version="1.0.5"; sha256="1hmb311qimm60l9zvk0nkgh4qy2givm8a8rdmmpfb9bfbbg6clks"; depends=[ggplot2 gridExtra]; }; panelaggregation = derive2 { name="panelaggregation"; version="0.1.1"; sha256="0x8ldqb9216pclfvs4ymdpian43v2ydkyflpf0k6lcn35r04xfr6"; depends=[data_table]; }; panelvar = derive2 { name="panelvar"; version="0.5.1"; sha256="1394lvvpzbcvm2mhxw68k784jyvsnzxiq787kdf4y4538lqgfx1n"; depends=[ggplot2 knitr MASS Matrix matrixcalc progress reshape2 texreg]; }; pangaear = derive2 { name="pangaear"; version="0.6.0"; sha256="0dykacf5ckhck08rbk6l5kyw51i2p1ncy44agcxj79cr290cd5ck"; depends=[crul jsonlite oai png rappdirs tibble xml2]; }; papayar = derive2 { name="papayar"; version="1.0"; sha256="11vkjhazfwfixsr6dba5jrcsr3r3mqgvj5s070b4gp70d6k1z8s5"; depends=[htmltools neurobase oro_nifti servr]; }; - papeR = derive2 { name="papeR"; version="1.0-2"; sha256="1pp6zzdqg9lj61f8p90sxl30vp9knmis7154fmfpm6pynbgr46ms"; depends=[car gmodels xtable]; }; + papeR = derive2 { name="papeR"; version="1.0-3"; sha256="0c3zziy32wnpvnv7d3kh1gs24pmy9ap2hq0l3ss2h79s5vmc76xi"; depends=[car gmodels xtable]; }; paperplanes = derive2 { name="paperplanes"; version="0.0.1.9"; sha256="1d9grc95xqxn91lvk8v7w3z90bhl8savkhihwshyjp8ij2xpzfkl"; depends=[]; }; parSim = derive2 { name="parSim"; version="0.1"; sha256="15d3k91mvbv2hmq0l1jfr0hsv2zkz3cr6axg85kf9bd9q79b85qp"; depends=[dplyr]; }; - parallelDist = derive2 { name="parallelDist"; version="0.2.1"; sha256="1w6c5ijnynqq7q15f5mflmxcad6yblpdaflh378lf9vm2xdq0yjp"; depends=[Rcpp RcppArmadillo RcppParallel]; }; + parallelDist = derive2 { name="parallelDist"; version="0.2.2"; sha256="0h7bf2mlfpydqr3msirg07wn041fqlcdha9m8rybix1x3vi778qc"; depends=[Rcpp RcppArmadillo RcppParallel]; }; parallelMCMCcombine = derive2 { name="parallelMCMCcombine"; version="1.0"; sha256="05krkd643awqhfrylq9lxr2cmgvnm1msn2x8p1l1483n2gzyklz7"; depends=[mvtnorm]; }; parallelML = derive2 { name="parallelML"; version="1.2"; sha256="05j0rb81i8342m8drwgmgi1w30q96yf501d83cdq4zhjbchphbl1"; depends=[doParallel foreach]; }; parallelMap = derive2 { name="parallelMap"; version="1.3"; sha256="026d018fr2a43cbh8bi2dklzr9fxjzdw5qyq84g2i18v5ibr6bd5"; depends=[BBmisc checkmate]; }; @@ -9424,7 +9828,7 @@ in with self; { paramlink = derive2 { name="paramlink"; version="1.1-2"; sha256="0y6wsrxwyavipmrjjznr2n920w0p6qlwapxc9mnkh9c6w3yznka2"; depends=[assertthat kinship2 maxLik]; }; params = derive2 { name="params"; version="0.6.1"; sha256="0w7k8k7z8p1y2w0dhpfssa868xaikfzfdjw2vlj1yl299k5yisax"; depends=[whisker]; }; paramtest = derive2 { name="paramtest"; version="0.1.0"; sha256="0yn1s1qkgby8x0qn7cy1zhxzc0wyi7bm30pkvijhn5h5afjpylsy"; depends=[boot]; }; - paran = derive2 { name="paran"; version="1.5.1"; sha256="0nvgk01z2vypk5bawkd6pp0pnbgb54ljy0p8sc47c8ibk242ljqk"; depends=[MASS]; }; + paran = derive2 { name="paran"; version="1.5.2"; sha256="0d9la83mxfpfgdfrqa40ck5fcp3j2b70d8c8nl9wmdsgvgqrl23s"; depends=[MASS]; }; parboost = derive2 { name="parboost"; version="0.1.4"; sha256="087b4as0w8bckwqpisq9mllvm523vlxmld3irrms13la23z6rjvf"; depends=[caret doParallel glmnet iterators mboost party plyr]; }; parcor = derive2 { name="parcor"; version="0.2-6"; sha256="10bhw50g8c4ln5gapa7wghhb050a3jmd1sw1d1k8yljibwcbbx36"; depends=[Epi GeneNet glmnet MASS ppls]; }; parfm = derive2 { name="parfm"; version="2.7.5"; sha256="1wnklksqybhaqwsfifwv8gmqjl6g9dm9s4z131mbjn4dm7bj1bra"; depends=[msm optimx sn survival]; }; @@ -9432,21 +9836,22 @@ in with self; { parlitools = derive2 { name="parlitools"; version="0.2.1"; sha256="14nzcbjddwnsiwwksl7bf2qk1kzzcnjc0b47ilqiq4nc4c386im3"; depends=[dplyr hansard httr jsonlite mnis sf stringi tibble]; }; parma = derive2 { name="parma"; version="1.5-3"; sha256="0yjpmxz20v6k107qylw42yf1b231hzym9dizjcq1kalivvscczc5"; depends=[corpcor nloptr quadprog Rglpk slam truncnorm]; }; parmigene = derive2 { name="parmigene"; version="1.0.2"; sha256="1fsm6pkr17jcbzkj1hbn91jf890fviqk1lq6ls8pihsdgah1zb4d"; depends=[]; }; + parmsurvfit = derive2 { name="parmsurvfit"; version="0.0.1"; sha256="0sgs2gk2592ly2jkvfnhjcwfxhhwk7758hfnxi6id83aca6l52wm"; depends=[fitdistrplus flexsurv ggplot2]; }; parsec = derive2 { name="parsec"; version="1.2.0"; sha256="0ilc9d6kv7zb0kwhpqqi3bjx3r1cihyfamphrw83p6zy3xhfmfs6"; depends=[igraph]; }; parsedate = derive2 { name="parsedate"; version="1.1.3"; sha256="0mg7hbm3903iwvmpn51gjpaaq03rsp72hjb1g8h5g84r81iha002"; depends=[]; }; parsemsf = derive2 { name="parsemsf"; version="0.1.1"; sha256="0ks4503k06ib5lq4ar2rg0sdni99rjcqxj76b0mclasxbi07kjsa"; depends=[DBI dbplyr dplyr lazyeval RSQLite stringr tidyr]; }; partDSA = derive2 { name="partDSA"; version="0.9.14"; sha256="1kp0cdsdjiay349jz22iqfzvspny8s343cfan8xahgf931k9h8p6"; depends=[survival]; }; partialAR = derive2 { name="partialAR"; version="1.0.11"; sha256="1x7vsrjn91nr4bbkzz9mp8h93j9yhwwaqw1abh5n3bsrkq3xmgqj"; depends=[data_table ggplot2 KFAS MASS plot3D Rcpp tseries urca zoo]; }; - partialCI = derive2 { name="partialCI"; version="1.1.1"; sha256="07c3484v8axqxss877dvb6d5gh4vrr8dbvcqgq2xgwb6wcs59nyy"; depends=[data_table ggplot2 glmnet KFAS MASS partialAR Rcpp TTR zoo]; }; + partialCI = derive2 { name="partialCI"; version="1.2.0"; sha256="0hi936yg4g5bg61ix2i68f8q4c5nvvshl2728ynz1rl970qfcrp7"; depends=[data_table ggplot2 glmnet KFAS MASS partialAR Rcpp TTR zoo]; }; partialOR = derive2 { name="partialOR"; version="0.9"; sha256="02vbvln8lswysaafpxq5rxb6crp7yhlc13i42kybv8fr10jaagjj"; depends=[nnet]; }; particles = derive2 { name="particles"; version="0.2.1"; sha256="0rhxn3c62x3xc9lcy7xbg6r7pgfylan7cz24v8i9icjhl7xfswmv"; depends=[digest dplyr igraph magrittr mgcv Rcpp rlang tidygraph]; }; - partitionComparison = derive2 { name="partitionComparison"; version="0.2.3"; sha256="1p0f08za30kpmj9ky4jw6i3nl38i7xrslwsj60ih7gvph2jd39ix"; depends=[lpSolve Rdpack]; }; + partitionComparison = derive2 { name="partitionComparison"; version="0.2.4"; sha256="07w1r4mdi8gv5bjj8shjdjbkply85pp7x5gnwxq96f9g1p4s24pz"; depends=[lpSolve Rdpack]; }; partitionMap = derive2 { name="partitionMap"; version="0.5"; sha256="0pi066xaaq0iqr0d7cncdzjd7bacmgrivc4qvhqx0y7q1vifrdjm"; depends=[randomForest]; }; partitionMetric = derive2 { name="partitionMetric"; version="1.1"; sha256="1wry9d3s814yp79ayab7rzf8z5l2mwpgnrc5j7d2sac24vp4pd48"; depends=[]; }; partitions = derive2 { name="partitions"; version="1.9-19"; sha256="1pklfnjdc094c8nzkqcdvqzdh8v3p5n8jbg4pf9678iw648saiyx"; depends=[gmp polynom]; }; partools = derive2 { name="partools"; version="1.1.6"; sha256="0w7p88y4ab4v14k16k95cyb5f3yl2g6ban11775rmi2h9xqkfxk8"; depends=[data_table pdist regtools]; }; partsm = derive2 { name="partsm"; version="1.1-2"; sha256="0cv3lgkdkn97bc85iwlv9w5pmqwwwsgb717zxnbgb5mzf4xn3f3g"; depends=[]; }; - party = derive2 { name="party"; version="1.3-0"; sha256="1ih3c85s40raq8a0cy952a3g31gf2iwnafy8ij1svzc4hgfzaw2m"; depends=[coin modeltools mvtnorm sandwich strucchange survival zoo]; }; + party = derive2 { name="party"; version="1.3-1"; sha256="13h8k2m933g9l4df1jjihn9i7ad0jrjyzga6chy0hb54xxi2asni"; depends=[coin modeltools mvtnorm sandwich strucchange survival zoo]; }; partykit = derive2 { name="partykit"; version="1.2-2"; sha256="118zrf9015kh0gicma98ddm80qhicdlhri2h1nwz0wlng9hkyxbg"; depends=[Formula inum libcoin mvtnorm rpart survival]; }; parviol = derive2 { name="parviol"; version="1.1"; sha256="1sfgic86ssd5wjf9ydss9kjd3m4jmm2d1v896sjsv8bydwymbpx3"; depends=[vioplot]; }; passport = derive2 { name="passport"; version="0.2.0"; sha256="1jiwivrz7781zmwxmw13rxl80cr9r5pinnk5bvqz8nhfmlx0zmgd"; depends=[]; }; @@ -9460,15 +9865,16 @@ in with self; { patentsview = derive2 { name="patentsview"; version="0.2.1"; sha256="104qq6cqvfk5m2yynpg5iwlp89y5qx18m20qp343mknxjbvqpjdg"; depends=[httr jsonlite]; }; pathClass = derive2 { name="pathClass"; version="0.9.4"; sha256="1vzmz3bml37wfxsjhkw9fip90sr1iv521ccr7nlf6xd30wavqywk"; depends=[affy Biobase igraph kernlab lpSolve ROCR svmpath]; }; pathdiagram = derive2 { name="pathdiagram"; version="0.1.9"; sha256="1j2h9mmwfi95nwhk9214kcfpb1qrmw249mjaza7i9gijmlicraxz"; depends=[shape]; }; - pathfindR = derive2 { name="pathfindR"; version="1.2.0"; sha256="1wf6wv9mdiagv3r4d5nviw8c2zxw7hlxa0mm9kk624g1qfhknnz2"; depends=[AnnotationDbi DBI doParallel foreach fpc ggplot2 knitr org_Hs_eg_db pathview rmarkdown shiny]; }; + pathfindR = derive2 { name="pathfindR"; version="1.2.3"; sha256="13n8jjzffhr0w7m0h23c16ayd8069ficsx6z98z459805ikzwv9y"; depends=[AnnotationDbi DBI doParallel foreach fpc ggplot2 knitr org_Hs_eg_db pathview rmarkdown shiny]; }; pathmapping = derive2 { name="pathmapping"; version="1.0.2"; sha256="0kx4wxf6lhi58sif8fzr5w4wa0i5253fq4v0ynp721fv1hkvmhvz"; depends=[]; }; pathmox = derive2 { name="pathmox"; version="0.2.0"; sha256="0hcllnpjjays35yngz309f1gcx9qg5z9h302kg9mhxs90470x4w0"; depends=[plspm tester]; }; pathological = derive2 { name="pathological"; version="0.1-2"; sha256="07g7ps6zfxi98y98kwas95rr5ybfd4bpih5mhkjafc7bn99254n2"; depends=[assertive_base assertive_files assertive_numbers assertive_properties assertive_reflection assertive_strings assertive_types magrittr plyr stringi]; }; + patrick = derive2 { name="patrick"; version="0.0.1"; sha256="16r0q3d9bq06393v46gabn9y9w2w7nqjcl65b7y2ryp35nv0aqsi"; depends=[dplyr purrr rlang testthat tibble]; }; patternator = derive2 { name="patternator"; version="0.1.0"; sha256="0s4vrhdfblllnhpz2awhhrkwm8d4170xg7fpsp7kvvqy8z8biwvi"; depends=[data_table]; }; patternize = derive2 { name="patternize"; version="0.0.1"; sha256="0xmz7ca555275a4x89vdmyk9x3m3sk964iwspv0dnxsmx5s1xmz7"; depends=[abind Morpho raster rgdal RNiftyReg sp]; }; patternplot = derive2 { name="patternplot"; version="0.2.1"; sha256="0ixb9x32fciwxwxnna47z9jb6s1zf3d9jqfiwvv4slaygi2cgydr"; depends=[dplyr ggplot2 gtable jpeg png R6 Rcpp RcppParallel]; }; pauwels2014 = derive2 { name="pauwels2014"; version="1.0"; sha256="1b7whn13lgydc69kg1fhnwkxirw0nqq75cfvii0yg0j4p8r1lw42"; depends=[deSolve ggplot2]; }; - pavo = derive2 { name="pavo"; version="1.3.1"; sha256="1vr3crp71dibm3jn88wh4gdia2l3z4aqmfns7v5pllqadk9s1064"; depends=[geometry mapproj pbmcapply rcdd]; }; + pavo = derive2 { name="pavo"; version="2.0.0"; sha256="1mcrx26lbhldmf1wlkpbpa4ld85wjbvr2kjidzb1hb78lqbv05ad"; depends=[geometry imager mapproj pbmcapply plot3D rcdd sp]; }; pawacc = derive2 { name="pawacc"; version="1.2.2"; sha256="0d5k0bq8zmb7sjvba3ljp97mba2iycnw44rnsnn2aajs02l1c2xg"; depends=[SparseM]; }; pawls = derive2 { name="pawls"; version="1.0.0"; sha256="01sf1cmd216ca5iwmw4hfnxi9lvh16r441cfcaa3n77zhq0i4w7n"; depends=[]; }; pbapply = derive2 { name="pbapply"; version="1.3-4"; sha256="0lk5kxac09xzdv6vf7ix6r5bfrm7cnpyr2l5mkd4igpciadszzfd"; depends=[]; }; @@ -9476,7 +9882,7 @@ in with self; { pbdBASE = derive2 { name="pbdBASE"; version="0.4-5.1"; sha256="0ghdq8ry6fiq8qj3plq2n8isjx6iacnhqd1z73bjckmvp99g221n"; depends=[pbdMPI pbdSLAP]; }; pbdDEMO = derive2 { name="pbdDEMO"; version="0.3-1"; sha256="0vr3dvvhr8j6xvdf308nn37y0lkl2ysm93yf0h7rclvqvsk1pf66"; depends=[pbdBASE pbdDMAT pbdMPI]; }; pbdDMAT = derive2 { name="pbdDMAT"; version="0.4-2"; sha256="1xiwfpi8r0l8jlfrc35aknm09y4qbn0hvvkscdpcxv9q7zifvl3v"; depends=[pbdBASE pbdMPI]; }; - pbdMPI = derive2 { name="pbdMPI"; version="0.3-6"; sha256="105nny9d4vm61iarckwf0x6lngkmg3jxys7nigshywhp91073ygk"; depends=[rlecuyer]; }; + pbdMPI = derive2 { name="pbdMPI"; version="0.3-8"; sha256="0yxzldgvjzzw4adsdv6sh3m3n6xlwfh2rmzn6pgppk8s1brbbjli"; depends=[rlecuyer]; }; pbdNCDF4 = derive2 { name="pbdNCDF4"; version="0.1-4"; sha256="0fd29mnbns30ck09kkh53dgj24ddrqzks4xrrk2hh1wiy7ap1h95"; depends=[]; }; pbdPROF = derive2 { name="pbdPROF"; version="0.3-1"; sha256="0a7c31605si062vbwcwngv770axlwyhh00cvdfqw3hv421p61sj8"; depends=[]; }; pbdRPC = derive2 { name="pbdRPC"; version="0.2-1"; sha256="1pz71zfs9qw96dj3h5mrm734vbbi4drlv9hrw91dbzm3a7jsxg4q"; depends=[]; }; @@ -9501,47 +9907,49 @@ in with self; { pcensmix = derive2 { name="pcensmix"; version="1.2-1"; sha256="1yrz4hdj52in8z65qyl18kh7frv75rb8ss5ljv3vbm6yhxi32jnd"; depends=[]; }; pcev = derive2 { name="pcev"; version="2.2.2"; sha256="1l0afcdzkxzkhkc8ln2fzi50hc7nfq46lg6hhx6rrzkb41w82iqw"; depends=[corpcor RMTstat]; }; pcg = derive2 { name="pcg"; version="1.1"; sha256="194j72hcp7ywq1q3dd493pwkn1fmdg647gmhxcd1jm6xgijhvv87"; depends=[]; }; + pcgen = derive2 { name="pcgen"; version="0.1.0.0"; sha256="151dhk1wnc5byrbvx2322bwy047ing3a9zw1q977w347r90h7arr"; depends=[ggm graph Hmisc lme4 MASS Matrix pcalg sommer]; }; pch = derive2 { name="pch"; version="1.3"; sha256="13pfrvp539fz4hxp08yil93caw3cjdna7xnky5fqd0lhc84fwq76"; depends=[survival]; }; pcnetmeta = derive2 { name="pcnetmeta"; version="2.6"; sha256="0rpd1bgg932xhj03fnskhbg7ni9nfd8qrvxvix8qmbgw8bwdsbgd"; depends=[coda rjags]; }; pco = derive2 { name="pco"; version="1.0.1"; sha256="0k1m450wfmlym976g7p9g8arqrvnsxgdpcazk5kh3m3jsrvrcchf"; depends=[]; }; - pcr = derive2 { name="pcr"; version="1.1.1"; sha256="1bm8c8ajb0imvnp8nwhskjkqdi4v9f11bsz2qdk45i5l2mq16kjc"; depends=[broom devtools dplyr ggplot2 magrittr purrr readr tidyr]; }; + pcr = derive2 { name="pcr"; version="1.1.2"; sha256="0sms024irkhqyb001lcicrm3dwnnyr2kw9kx10q3v9j6p7rxzhz2"; depends=[devtools dplyr ggplot2 magrittr purrr readr tidyr]; }; pcrcoal = derive2 { name="pcrcoal"; version="1.2.0"; sha256="0rd610ny8p7by3gi6kk130ii0qcswqsng5mzmxz8hrxqk0cs4c9x"; depends=[ape ggplot2 phylosim]; }; pcrsim = derive2 { name="pcrsim"; version="1.0.2"; sha256="04177xl513k01prmf93kha91dyxmb9v80d1y4lz73fxsifj6bhar"; depends=[data_table ggplot2 gWidgets mc2d plyr strvalidator]; }; pcse = derive2 { name="pcse"; version="1.9.1.1"; sha256="1rb9146vjkf36vc5v3frykmsff7kp6qp1hhmj8pak583in4rz8f8"; depends=[]; }; pdR = derive2 { name="pdR"; version="1.5"; sha256="072ra8czfvgcgkbdfkjhbpk7f23zh717f9sh84vls9j0wyrai6hn"; depends=[boot car coefplot lmtest papeR plm sandwich]; }; - pdSpecEst = derive2 { name="pdSpecEst"; version="1.2.1"; sha256="0j68jmsm6c9pan195k0l0nm1ldbipl5ywlbwkz61dblspizh04iw"; depends=[ddalpha multitaper Rcpp RcppArmadillo]; }; + pdSpecEst = derive2 { name="pdSpecEst"; version="1.2.3"; sha256="0kqph8134g1fyzc9b06nighkqsh6jjpckvwxhpslihj5sj3kapdd"; depends=[ddalpha multitaper Rcpp RcppArmadillo Rdpack]; }; pdc = derive2 { name="pdc"; version="1.0.3"; sha256="0503n7aiy0qrl790yfjvpm7bbyz1i4818rlg96q0fvzb58zqmyvc"; depends=[]; }; pder = derive2 { name="pder"; version="1.0-0"; sha256="097klk334bjhlss8x73f27l7jcp7d7vh10jr5sazm5kcvi95619i"; depends=[]; }; pdfCluster = derive2 { name="pdfCluster"; version="1.0-2"; sha256="0kbci54dlzn736835fh18xnf2pmzqrdmwa3jim29xcnwa1r2gklb"; depends=[geometry]; }; pdfetch = derive2 { name="pdfetch"; version="0.2.3"; sha256="1fcjhq79dcbnghmkfpy1h29gcywr1hq91xij5f21wgp4xx465sha"; depends=[curl httr jsonlite lubridate readr reshape2 XML xml2 xts zoo]; }; - pdfsearch = derive2 { name="pdfsearch"; version="0.1.1"; sha256="0k62j6ilv8rmmmasqyb3hklhjqg22jiyx0sxd7f8n0xmlfcjgfqi"; depends=[pdftools tibble]; }; + pdfsearch = derive2 { name="pdfsearch"; version="0.2.3"; sha256="1x6ymj6fk7bf2jx1lqryyzksg049ijdvb9syz244y43i7632ls59"; depends=[pdftools tibble tokenizers]; }; pdftables = derive2 { name="pdftables"; version="0.1"; sha256="1gnwjijr89cczchc7yi4w5xiw0dalbymvj23rymm8cfra34iwn5p"; depends=[httr]; }; pdftools = derive2 { name="pdftools"; version="1.8"; sha256="1yyhwr17bln59cr819igd7mxdy5mhqf5fwd68x8w3kgag0v0qyaz"; depends=[Rcpp]; }; pdist = derive2 { name="pdist"; version="1.2"; sha256="18nd3mgad11f2zmwcp0w3sxlch4a9y6wp8dfdyzvjn7y4b4bq0dd"; depends=[]; }; pdmod = derive2 { name="pdmod"; version="1.0.1"; sha256="04bk9gjg2c55hk6k1hy0m29927s8a5ig6mr4xb89npam68g0pcms"; depends=[mco]; }; - pdp = derive2 { name="pdp"; version="0.6.0"; sha256="12x9j3lwnss45wlafd5kc4nw293vhffijmgyafahqwz9if829m10"; depends=[ggplot2 gridExtra lattice magrittr mgcv plyr viridis]; }; + pdp = derive2 { name="pdp"; version="0.7.0"; sha256="0wcszaq4c14f9a2r1gd32mzhs035jlg2w8mkfklzigcj7fv9xmi8"; depends=[ggplot2 gridExtra lattice magrittr mgcv plyr viridis]; }; pds3 = derive2 { name="pds3"; version="0.5.0"; sha256="1hipi4ygk30khrrslxq3m9qdichazhrl34k444shs7gi6wjx9ilr"; depends=[rly]; }; peRiodiCS = derive2 { name="peRiodiCS"; version="0.5.0"; sha256="1366gmn6qfciwcjsfnbl3hfa16ffn11g00fm0kv74ilvm3nnawk3"; depends=[Hmisc rms]; }; peacots = derive2 { name="peacots"; version="1.3"; sha256="128qpz06b0giz80lp9yq9l6pxcjglfr97yickg7z64vzzl2jilmq"; depends=[]; }; + peakPantheR = derive2 { name="peakPantheR"; version="1.2.0"; sha256="1g9hj7z99cn0qgyxl4p6fln9mi95q87d25h8n32vlz7n1sv5jhiy"; depends=[doParallel foreach ggplot2 gridExtra minpack_lm MSnbase mzR scales stringr XML]; }; peakPick = derive2 { name="peakPick"; version="0.11"; sha256="1zf7ff9arm4hkdxrfhb0p8p7npd51icy773g2raaqsfys825xwhm"; depends=[matrixStats]; }; peakRAM = derive2 { name="peakRAM"; version="1.0.2"; sha256="0mj7f8jqkfky61xag2km0svbgvfmif3c1d8ccav6pv1963cg3cvv"; depends=[]; }; pear = derive2 { name="pear"; version="1.2"; sha256="1ixmyzm72s18qrfv2m8xzh5503k1q90lhddq4sp46m0q7qyxb192"; depends=[]; }; pearson7 = derive2 { name="pearson7"; version="1.0-2"; sha256="0x8bnlzgmfah8lzdg8skxs7bm8yq0nkrhqi7q43h902j4jl5b8jy"; depends=[]; }; - pec = derive2 { name="pec"; version="2018.04.18"; sha256="0a6q37l42zbz566bz0qs5aszd71bb0kd9bz0zmb42q0ak0v4yijd"; depends=[foreach prodlim rms survival timereg]; }; + pec = derive2 { name="pec"; version="2018.07.26"; sha256="07xr22klvmxpn2k72mjd775fs89f5hppb5xcy4sjy1njalmn3icm"; depends=[foreach prodlim rms survival timereg]; }; pedantics = derive2 { name="pedantics"; version="1.7"; sha256="14hphziwqrq4fkxlvp94j564q19k9fabvhmdz7zhb6cvak6xv1n6"; depends=[genetics kinship2 MasterBayes MCMCglmm mvtnorm]; }; pedgene = derive2 { name="pedgene"; version="2.9"; sha256="1200d6blz7n3krnvhw0i9mz6219vwk0vlj17yzr3fqzyn5cyf91z"; depends=[CompQuadForm kinship2 Matrix survey]; }; pedigree = derive2 { name="pedigree"; version="1.4"; sha256="1dqfvzcl6f15n4d4anjkd0h8vwsbxjg1lmlj33px8rpp3y8xzdgw"; depends=[HaploSim Matrix reshape]; }; pedigreemm = derive2 { name="pedigreemm"; version="0.3-3"; sha256="1bpkba9nxbaxnivrjarf1p2p9dcz6smf9k2djawis1wq9dhylvsb"; depends=[lme4 Matrix]; }; pedometrics = derive2 { name="pedometrics"; version="0.6-6"; sha256="1w9wa73wva6z0d56g221l8qmc5igfypwsa2xq4sn4r501bdy8qpq"; depends=[lattice latticeExtra Rcpp]; }; - pegas = derive2 { name="pegas"; version="0.10"; sha256="1qs2wxbgsraa6vqi7fh391hq2i4g1ysb06q4xqk0rkaymy5bp8ga"; depends=[adegenet ape]; }; + pegas = derive2 { name="pegas"; version="0.11"; sha256="0l21bapzbjcvblbvks3jh9rpy9hng1ccd7f0glhqw695lc737bpx"; depends=[adegenet ape]; }; pems_utils = derive2 { name="pems.utils"; version="0.2.17.8"; sha256="1qxsjzxb8gdw1hyxgd923s609k98pjdaxs6wm3pg4bl1w8sxqi8d"; depends=[ggplot2 lattice latticeExtra loa plyr RColorBrewer]; }; penDvine = derive2 { name="penDvine"; version="0.2.4"; sha256="0znpvsr7zy2wgy7znha1qiajcrz1z6mypi3f5hpims33z7npa7dl"; depends=[doParallel fda foreach lattice latticeExtra Matrix quadprog TSP]; }; penMSM = derive2 { name="penMSM"; version="0.99"; sha256="1xdcxnagvjdpgnfa5914gb41v5y4lsvh63lbz1d2l8bl9mpff3lm"; depends=[Rcpp]; }; - penalized = derive2 { name="penalized"; version="0.9-50.1"; sha256="0lhibn0bzdrlvdsp4ni0989jniyfbxnixh32g7qm5qwxf5jbky18"; depends=[Rcpp RcppArmadillo survival]; }; + penalized = derive2 { name="penalized"; version="0.9-51"; sha256="1zcrwa93mc27qj3g4ayc2k895r6g8q0g6qb2azmvj7wqk750va7a"; depends=[Rcpp RcppArmadillo survival]; }; penalizedLDA = derive2 { name="penalizedLDA"; version="1.1"; sha256="1bw5wiixmmg1vr3v0d59vh67f0gy2rvr30bi58skvrkb25qcjq6l"; depends=[flsa]; }; - penalizedSVM = derive2 { name="penalizedSVM"; version="1.1"; sha256="0zc36cgcrdy4rwhg4hhhahymqfalvc5v2zmqq56ikz5blln82qvq"; depends=[corpcor e1071 lhs MASS mlegp statmod tgp]; }; - penaltyLearning = derive2 { name="penaltyLearning"; version="2017.12.08"; sha256="0pkd853dq7frp0f9aii99qpnx9mk4gzb73iykfa5q9bnp45z8qd0"; depends=[data_table geometry ggplot2]; }; - pencopula = derive2 { name="pencopula"; version="0.3.5"; sha256="1cy36pprbrfabk9n3x4d1xbj1vd2dda7xq3ihj2hzniwn77j63wi"; depends=[fda lattice latticeExtra quadprog]; }; + penalizedSVM = derive2 { name="penalizedSVM"; version="1.1.2"; sha256="03zw95bc6svbnzak9x72s3b8l9gh581mxn2di1fl89gxlh864amd"; depends=[corpcor e1071 lhs MASS mlegp statmod tgp]; }; + penaltyLearning = derive2 { name="penaltyLearning"; version="2018.09.04"; sha256="07ddsq6bwbz0c9pixlw8gj1km6zqhqsqn1a19pgmjrr5mq1iix9p"; depends=[data_table geometry ggplot2]; }; + pencopula = derive2 { name="pencopula"; version="0.3.5.1"; sha256="1ivnqfq70gvnzc19brkvdlq0ks5dd954dj46j3pqpg6crvdrzh9r"; depends=[fda lattice latticeExtra quadprog]; }; pencopulaCond = derive2 { name="pencopulaCond"; version="0.2"; sha256="18hjjxnd0l2ms20ddqkghfbd4as5kq2rgwqzpz4y38k6nw76x511"; depends=[doParallel fda foreach igraph lattice latticeExtra pacotest quadprog TSP]; }; pense = derive2 { name="pense"; version="1.2.0"; sha256="0wilfjhkj5hrgm7mak1hvlk07wrr3f774w26vyvbwlm8xsxxsbzz"; depends=[Matrix Rcpp RcppArmadillo robustbase]; }; pensim = derive2 { name="pensim"; version="1.2.9"; sha256="10nrnxwfs41bhybs7j6xgnx0pq3c802n9k8irngmh8iy4w3wbhrq"; depends=[MASS penalized]; }; @@ -9550,7 +9958,7 @@ in with self; { pequod = derive2 { name="pequod"; version="0.0-5"; sha256="0mwrgyrxgiifpnpy15qxpdrdmd7dxqihccrnj5nh8fq9fvwymamg"; depends=[car ggplot2]; }; perARMA = derive2 { name="perARMA"; version="1.6"; sha256="0k70lcqhiiffrwzvh51asnhx68qxpnjnxadarvgpgbc7kfy7lv9x"; depends=[corpcor gnm matlab Matrix signal]; }; perccal = derive2 { name="perccal"; version="1.0"; sha256="1akak068d0g70amj5sbvnqbywzy21l4wz11mhp71b7cp4xmr9n12"; depends=[Rcpp RcppArmadillo RcppEigen]; }; - perccalc = derive2 { name="perccalc"; version="1.0.1"; sha256="0dq5m7d6jdapbnkh65f5cizqiggpl1922nl4gc6damzvyym95qrj"; depends=[broom dplyr magrittr multcomp purrr tibble tidyr]; }; + perccalc = derive2 { name="perccalc"; version="1.0.3"; sha256="0x895b75fjipzv7ff9mz7qpcabm9zys3bjsalk6h2q2350lwjmq1"; depends=[broom dplyr magrittr multcomp purrr tibble tidyr]; }; performanceEstimation = derive2 { name="performanceEstimation"; version="1.1.0"; sha256="08jx2zl6xh0rp54xa70gb717wbfdzfrx9b47i3b3ly41qaf85vrc"; depends=[dplyr ggplot2 parallelMap tidyr]; }; pergola = derive2 { name="pergola"; version="1.0"; sha256="1650ipp2b455xdkznwm7bnxvimad7nbyr9i1lg2vdh64j1qfh7gl"; depends=[seriation]; }; perm = derive2 { name="perm"; version="1.0-0.0"; sha256="0075awl66ynv10vypg63fcxk33qzvxddrp8mi4w08ysvimcyxijk"; depends=[]; }; @@ -9558,32 +9966,33 @@ in with self; { permGPU = derive2 { name="permGPU"; version="0.14.9"; sha256="10r2qxbvzjxv3520lrn6cwi5akhhwgkhz7yaqxi5vh2f5l0s49wy"; depends=[Biobase foreach RUnit survival]; }; permGS = derive2 { name="permGS"; version="0.2.5"; sha256="0d2kp3c1fmnjjmsvc2qwh6m66yqvy2vrrxgv1fj2i4clsbavfa0y"; depends=[coin survival]; }; permPATH = derive2 { name="permPATH"; version="1.1"; sha256="06h1lqpmkg4ajjh4r837qp094h105n4mpvafnp2nsbv9yyayd4h8"; depends=[R2HTML xtable]; }; - permubiome = derive2 { name="permubiome"; version="1.1"; sha256="02fg1g96pg6a87n8mhrls54xp0vnqqsgg39nnjirxr7hd74l71x9"; depends=[ggplot2]; }; + permubiome = derive2 { name="permubiome"; version="1.2"; sha256="0np10qhj5rl2gjmq5sfnpaqymmr0wag2b8fwyzndjflvypfmcsyp"; depends=[ggplot2]; }; permuco = derive2 { name="permuco"; version="1.0.1"; sha256="19spn5ra41v7s4ixdg5pbksfi8linhvhvfmllz72iw6wbzsw8m0m"; depends=[MASS Matrix permute]; }; permutations = derive2 { name="permutations"; version="1.0-2"; sha256="04lak21x0z1cskgm5w4xdyq59kmyrz64bwfpf332vfka54aiv8lk"; depends=[magic numbers partitions]; }; permute = derive2 { name="permute"; version="0.9-4"; sha256="1w8wzk1fg9q7wvisnfp2js70dg0m9wi12gkdhpyngpbdcgssahd5"; depends=[]; }; permutes = derive2 { name="permutes"; version="0.1"; sha256="1m5596l80nyyzassiwb6zd2fnp2jglj5vkp9xsbp28swd0q2wd90"; depends=[ggplot2 lmPerm plyr viridis]; }; perry = derive2 { name="perry"; version="0.2.0"; sha256="1lfmcq2xsxmfs7cxvhgxcsggslgjicbaks4wcjw1yjh67n559j46"; depends=[ggplot2 robustbase]; }; persiandictionary = derive2 { name="persiandictionary"; version="1.0"; sha256="0rgi36ngpiax3p5zk4cdgf3463vgx7zg5wxscs2j7834yh37jwax"; depends=[]; }; - personalized = derive2 { name="personalized"; version="0.1.5"; sha256="1id3ml5n7l7lgd029csn23ffrsqhm4g1id20hxqhqz4knknfxkkf"; depends=[foreach gbm ggplot2 glmnet kernlab mgcv plotly survival]; }; + personalized = derive2 { name="personalized"; version="0.2.1"; sha256="0qdbnra2ghz3i5xl4gw8ivalci1mqw0qblxvw3mfp0sbj4hvsssy"; depends=[foreach gbm ggplot2 glmnet kernlab mgcv plotly survival]; }; personograph = derive2 { name="personograph"; version="0.1.3"; sha256="07lrlbw4222l1d5rwn0hfqliyk8sqjf6ipz4n2zwcbk113bb8sy7"; depends=[grImport]; }; perspectev = derive2 { name="perspectev"; version="1.1"; sha256="175s1nq5z4gfs5qb39lq230g6n0v8fxzs5hr9j2rgx0knpbjfq03"; depends=[ape boot doParallel foreach ggplot2 mapproj sp]; }; perturb = derive2 { name="perturb"; version="2.05"; sha256="18ydmmp8aq4rf9834dmsr4fr9r07zyn97v8a1jqz3g9njza983la"; depends=[]; }; - perturbR = derive2 { name="perturbR"; version="0.1.1"; sha256="13in5xjv1854ihalyj4427ix4scc17b95iw72rcb4yivha9jgplq"; depends=[dils ggplot2 igraph mcclust]; }; + perturbR = derive2 { name="perturbR"; version="0.1.2"; sha256="0hb4bbcij5x9nbvmwr0j59x1hsnf9ddyhkixnbwvmbsha0nkcbww"; depends=[ggplot2 igraph]; }; petitr = derive2 { name="petitr"; version="1.0"; sha256="0i13zhdrdka0ij0khdzj6ylvvcn4wxvplb8a368i1s64cpgak30c"; depends=[]; }; petrinetR = derive2 { name="petrinetR"; version="0.2.0"; sha256="04alyjjnwgkbd4qigxki57v3hqa02vr1d5g7slp5njds1vk928ci"; depends=[DiagrammeR dplyr purrr visNetwork xml2]; }; - petro_One = derive2 { name="petro.One"; version="0.1.3"; sha256="13bxd011lprimy5m3z08l4yng2fkp28b1ad1bqs0piffx5bxw13n"; depends=[cluster data_table dplyr ggplot2 graph magrittr RColorBrewer Rgraphviz rvest RWeka tibble tm urltools wordcloud xml2]; }; pewdata = derive2 { name="pewdata"; version="0.2.0"; sha256="17j8fdn9x6hannr91zyccya523z3zm03gr517xfcyrd0m486xnqb"; depends=[httr magrittr purrr rvest]; }; pez = derive2 { name="pez"; version="1.1-1"; sha256="14n9s604wwh07kjir5kw6sra6bbmnpg00h3zvli3zqd8lx892hm8"; depends=[ade4 ape apTreeshape caper FD Matrix mvtnorm picante quantreg vegan]; }; pfa = derive2 { name="pfa"; version="1.1"; sha256="0ikdd7ps8wnjp9nm66w447m06hqxnnk553jglxikl2w5d9vk6b31"; depends=[lars POET quantreg]; }; pgam = derive2 { name="pgam"; version="0.4.15"; sha256="12llflsb32dfvxl3nbyb9bsl9bmd35g5g163hd3axzmg1bgi21ls"; depends=[]; }; - pgbart = derive2 { name="pgbart"; version="0.6.11"; sha256="1xfbpbxqynglw7j311pmx3qsi40r0416yflklh0qggr3pq0qf88k"; depends=[BayesTree]; }; + pgbart = derive2 { name="pgbart"; version="0.6.12"; sha256="0ykxdrjwswh6kwrs5f83ifqyf23hgq6q73aidmsh1p9iwaxg429r"; depends=[BayesTree]; }; + pgdraw = derive2 { name="pgdraw"; version="1.0"; sha256="1ips7wxksk69rgirgmd7aqqdf34qis6692wvn7npyzq9y24gwkmb"; depends=[Rcpp]; }; pgee_mixed = derive2 { name="pgee.mixed"; version="0.1.0"; sha256="115vvpv54q80486i3xs2yhmfyx476cf4g1v43q6l7wj3jwzcrvbg"; depends=[copula mvtnorm Rcpp RcppArmadillo]; }; pgirmess = derive2 { name="pgirmess"; version="1.6.9"; sha256="1i1qn68isaz2lbpqyydjgj9kri09aknza5qjn6m1wa1alyl7f611"; depends=[boot maptools rgdal rgeos sp spdep splancs]; }; pglm = derive2 { name="pglm"; version="0.2-1"; sha256="14hnlidf62kzcf83jc7k17n4hjjaj82scdwh8a7qxd056vygkqx2"; depends=[maxLik plm statmod]; }; pgmm = derive2 { name="pgmm"; version="1.2.2"; sha256="1z39148gvs5nndd54x2afpsqdyqd8apjgnxn0ndv2071aa8gyk1j"; depends=[]; }; pgnorm = derive2 { name="pgnorm"; version="2.0"; sha256="1k9z7pvmranr8m62v7amc0pj6lwzh3wqi79gg3mflifn1mr6c057"; depends=[]; }; pgraph = derive2 { name="pgraph"; version="0.8"; sha256="1r784snci5m81qljfh1r3w8qzszmy0476zvsd1alh43afzg9zpr5"; depends=[energy glasso glmnet SAM]; }; + pgsc = derive2 { name="pgsc"; version="1.0.0"; sha256="1y4szqn1jhp3yn8q738dpbhnqcqk45vgbmczamai154w3wb0qai7"; depends=[nloptr Rcpp RcppArmadillo reshape2]; }; ph2bayes = derive2 { name="ph2bayes"; version="0.0.2"; sha256="1xm7930gycxrz308dnfnp023yidqik52sbrli35f3773mnfcid2g"; depends=[Rcpp]; }; ph2bye = derive2 { name="ph2bye"; version="0.1.4"; sha256="0h5d8d4bagkp6g0nb67cb225ki5p1amnclnfj6afgdcsli5clr67"; depends=[animation nleqslv Rcpp VGAM]; }; ph2hetero = derive2 { name="ph2hetero"; version="1.0.2"; sha256="0aphkdb0ka8lk9q3r4ivkv4hrn7xz62rgqdbpkcwh9s455n38nyi"; depends=[clinfun mvtnorm]; }; @@ -9591,8 +10000,8 @@ in with self; { phangorn = derive2 { name="phangorn"; version="2.4.0"; sha256="0xc8k552nxczy19jr0xjjagrzc8x6lafasgk2c099ls8bc1yml1i"; depends=[ape fastmatch igraph magrittr Matrix quadprog Rcpp]; }; phantom = derive2 { name="phantom"; version="0.1.3"; sha256="0kgw65jziw5s03isq5ywmqijhkbik5i84k30hx5gbi0zzgj8y0h1"; depends=[gplots MASS NMF qusage RColorBrewer Rcpp RcppArmadillo]; }; phase1RMD = derive2 { name="phase1RMD"; version="1.0.8"; sha256="1wvlajsqb8y8f30asq1lyk87kmakh2risnky98g5gday765y90qa"; depends=[arrayhelpers boot coda ggplot2 mvtnorm rjags]; }; - phaseR = derive2 { name="phaseR"; version="1.3"; sha256="1hwclb7lys00vc260y3z9428b5dgm7zq474i8yg0w07rxqriaq2h"; depends=[deSolve]; }; - phateR = derive2 { name="phateR"; version="0.2.8"; sha256="17wlfdcfb14wxv3j45pd5672g5b2w858b65z6x3ck4hi2v8kz19v"; depends=[ggplot2 Matrix reticulate]; }; + phaseR = derive2 { name="phaseR"; version="2.0"; sha256="14shpsyrcz1j0bl60vh37cpcvmry48s76xlf4f9lmq4l5vynhrcn"; depends=[deSolve]; }; + phateR = derive2 { name="phateR"; version="0.2.9"; sha256="0zsi047rm0vi5ap4aaiab0ll19xarbg31k4q3fs3dcmsnqg1nrj1"; depends=[ggplot2 Matrix reticulate]; }; phcfM = derive2 { name="phcfM"; version="1.2"; sha256="0i1vr8rmq5zs34syz2vvy8c9603ifzr9s5v2izh1fh8xhzg7655x"; depends=[coda]; }; pheatmap = derive2 { name="pheatmap"; version="1.0.10"; sha256="1jzxs5hwbz3r0z2pp09i7fd14sndxnrbm3zibaac3kny4nzydzf7"; depends=[gtable RColorBrewer scales]; }; phenability = derive2 { name="phenability"; version="2.0"; sha256="0can8qgdpfr4h6jfg23cnwh7hhmwv6538wg2jla9w138la7rhpd1"; depends=[calibrate]; }; @@ -9601,8 +10010,8 @@ in with self; { pheno = derive2 { name="pheno"; version="1.6"; sha256="0xdya1g1ap7h12c6zn3apbkxr725rjhcp4gbdchkvcnwz4y9vw8c"; depends=[nlme quantreg SparseM]; }; pheno2geno = derive2 { name="pheno2geno"; version="1.4.0"; sha256="0fy8z6x1y0sakp07jb6zs0w0f86pbbllicj4qylxzfd5rpn1rqr0"; depends=[mixtools qtl VGAM]; }; phenoCDM = derive2 { name="phenoCDM"; version="0.1.3"; sha256="1cyqwc36zwa2a4ljy0xnqz0hhw0r98qk2an5y002lrchkqydplwp"; depends=[rjags]; }; - phenocamr = derive2 { name="phenocamr"; version="1.1.0"; sha256="10k7z82skkf9l15a2b77ygg5lkg0x68z7xbkw4p3mgs68dd9ah63"; depends=[changepoint curl daymetr DT jsonlite leaflet plotly shiny shinydashboard zoo]; }; - phenology = derive2 { name="phenology"; version="7.0"; sha256="1glbjm7i2kyl04k0sam29zy1lpzfq2mpkgg44jpnby8c9vz8pkmi"; depends=[HelpersMG lmf numDeriv optimx]; }; + phenocamr = derive2 { name="phenocamr"; version="1.1.1"; sha256="1ic0w9rfh0s50b9kzwmcqam51vibq9ji19vkcscz10grdbwjc502"; depends=[changepoint daymetr httr jsonlite shiny zoo]; }; + phenology = derive2 { name="phenology"; version="7.2"; sha256="0p39xihqlcapgsb6j90g9hal1jjrd9fra639hxc5gw4kl8nhlndq"; depends=[HelpersMG lmf numDeriv optimx]; }; phenomap = derive2 { name="phenomap"; version="1.2.1"; sha256="0kpngxqrbahild5nblfvgx2kna43hqqldx5q3b127dnqwzbhfvbb"; depends=[doParallel dplyr phenex plyr raster rgdal stringr]; }; phenopix = derive2 { name="phenopix"; version="2.3.1"; sha256="1yy163nh2b74m0v7f2gkgxaplvw4whs2h30bkw4chl0zyrcrci86"; depends=[bcp doParallel foreach gtools iterators jpeg plyr raster SDMTools sp stringr strucchange zoo]; }; phiDelta = derive2 { name="phiDelta"; version="1.0.1"; sha256="0g1g5516p8i1gfpvsy75rdirib8sx1ki2mbf1cvgsnzh70h72gbv"; depends=[]; }; @@ -9611,10 +10020,10 @@ in with self; { phonR = derive2 { name="phonR"; version="1.0-7"; sha256="0al2cbynnbvmd90lk1w1g1ppslqq0ng8vbb6bl7m4kqwd2lgv056"; depends=[deldir plotrix splancs]; }; phonTools = derive2 { name="phonTools"; version="0.2-2.1"; sha256="01i481mhswsys3gpasw9gn6nxkfmi7bz46g5c84m13pg0cv8hxc7"; depends=[]; }; phonenumber = derive2 { name="phonenumber"; version="0.2.2"; sha256="1m5idp538lvynmfp8m7l89js6hk5lpp26k419bdvj3hd3ap0n9lg"; depends=[]; }; - phonics = derive2 { name="phonics"; version="1.0.0"; sha256="02bkw589iijlzbw0cbg9qhq99jij2p92cqrxa77chkly4naqkqds"; depends=[BH Rcpp]; }; - photobiology = derive2 { name="photobiology"; version="0.9.21"; sha256="02516yl2fgfnswyfrhq8s229bniv81ml5vkdq7ap17a2g4v92hvc"; depends=[caTools dplyr lubridate plyr polynom rlang splus2R tibble]; }; + phonics = derive2 { name="phonics"; version="1.1.0"; sha256="02h26dlhw0hisr2ifa1rkrzw0350pk32mrba7h1rwsh41vxv9sji"; depends=[BH Rcpp]; }; + photobiology = derive2 { name="photobiology"; version="0.9.24"; sha256="10z9bplknis5zp6m5ayggr7pilv0pkbgyl2hs4qfmddby7cfmbsj"; depends=[dplyr lubridate plyr polynom rlang splus2R tibble zoo]; }; photobiologyFilters = derive2 { name="photobiologyFilters"; version="0.4.4"; sha256="14aiw5jxd6wnngy1rbbm85l0yx64nxrancal017wvr5n867c32d6"; depends=[photobiology]; }; - photobiologyInOut = derive2 { name="photobiologyInOut"; version="0.4.14"; sha256="1q0dd3szr06rm6zy2mkb37n4s37554x71jgkhmw88iiy58y2fkv5"; depends=[colorSpec dplyr hyperSpec lazyeval lubridate pavo photobiology readr readxl tibble tidyr]; }; + photobiologyInOut = derive2 { name="photobiologyInOut"; version="0.4.17-1"; sha256="1m2hjpjciqc1r53qflv7ci2n7jnng11aij8wz91nzi0y0ypics60"; depends=[colorSpec dplyr hyperSpec lazyeval lubridate photobiology readr readxl stringr tibble tidyr]; }; photobiologyLEDs = derive2 { name="photobiologyLEDs"; version="0.4.3-1"; sha256="0inhl6ba1fzkak4752m60hkm6fzapzyz5kchvz18yv33dmm13v1c"; depends=[photobiology]; }; photobiologyLamps = derive2 { name="photobiologyLamps"; version="0.4.2"; sha256="0fcin04xc2k39qdipslqd3w3bsd8yl3xlvg7mlgm3aphfwg4hnmj"; depends=[photobiology]; }; photobiologyPlants = derive2 { name="photobiologyPlants"; version="0.4.1"; sha256="0mpb5sv4wkvqzbhf193zkhap44yzlhxrnjx1p3j9iyjdg4bb1kka"; depends=[photobiology photobiologyWavebands]; }; @@ -9622,10 +10031,10 @@ in with self; { photobiologySun = derive2 { name="photobiologySun"; version="0.4.0"; sha256="0aczf1ki623pflsnn08z0nrsx7wwn67b8ql08ar08rpk1bj93nfy"; depends=[photobiology]; }; photobiologyWavebands = derive2 { name="photobiologyWavebands"; version="0.4.2"; sha256="0l1784xi9hzsxmiqipv0zkb4lq1xd9f890rzsgsjb0km6js5x3q7"; depends=[photobiology]; }; phrasemachine = derive2 { name="phrasemachine"; version="1.1.2"; sha256="1145c8ymarhbza8253rw4ybnq0k5pcckqxpdcr8s2y23pj182r1p"; depends=[NLP openNLP stringr]; }; - phreeqc = derive2 { name="phreeqc"; version="3.3.10"; sha256="0hcdjj1wgfknqf5yx50b9vz5f72siw4dslyvk2xbrfnwbzzz4qib"; depends=[]; }; + phreeqc = derive2 { name="phreeqc"; version="3.4.9"; sha256="0g3xlpwzb6vxz129kh7krf2lbhx6bgwmyjxk09mrzxzh3r5lqd9y"; depends=[]; }; phtt = derive2 { name="phtt"; version="3.1.2"; sha256="1fvvx5jilq5dlgh3qlfsjxr8jizy4k34a1g3lknfkmvn713ycp7v"; depends=[pspline]; }; phuassess = derive2 { name="phuassess"; version="1.1"; sha256="0jplj9gih32dllx2hw5aqvc9b94sbrbv66s3a5r8mdbpjh93rhng"; depends=[]; }; - phuse = derive2 { name="phuse"; version="0.1.5"; sha256="0cl36yxxhadg5rwdz3pxzqly52bv5510rr5ijyzb0x24l7zx6pjk"; depends=[git2r RCurl rlist shiny yaml]; }; + phuse = derive2 { name="phuse"; version="0.1.6"; sha256="1abfpnf5z88gg0cylfh7j4226yniw3sgx08asrr7xxq6ri0yxl4w"; depends=[git2r httr RCurl rlist shiny yaml]; }; phybreak = derive2 { name="phybreak"; version="0.2.0"; sha256="0vapc0w308wv1cd72p2xbj3q7jfnxwp08g5g8855a38pcn3njbfg"; depends=[ape phangorn Rcpp stringr]; }; phyclust = derive2 { name="phyclust"; version="0.1-22"; sha256="0c3w1vafhcshnh5lkb6bykk6w7w91qigz3sf215zqmrra1acri0d"; depends=[ape]; }; phyext2 = derive2 { name="phyext2"; version="0.0.4"; sha256="0j871kgqm9fll0vdgh071z77ib51y8pxxm0ssjszljvvpx1mb8rb"; depends=[ape phylobase]; }; @@ -9639,31 +10048,34 @@ in with self; { phyloland = derive2 { name="phyloland"; version="1.3"; sha256="10g40m6n2s4qvnzlqcwpy3k0j7bxdp79f586jj910b8p00ymrksp"; depends=[ape]; }; phylolm = derive2 { name="phylolm"; version="2.6"; sha256="0vah8ibicldi57wab4sk1kx7gdq6h34bm6swmxzhq7kikxfwmmyj"; depends=[ape future_apply]; }; phylometrics = derive2 { name="phylometrics"; version="0.0.1"; sha256="1pmr6l3wmaf91wdlsc5m63l07fibngnly2qzkma0rdi463ii03il"; depends=[mvtnorm]; }; - phylopath = derive2 { name="phylopath"; version="1.0.0"; sha256="1n6f7piygps3pwqapsvqpz764995kxhdqz1hc5n6znvl01ykdqx5"; depends=[ape dplyr ggm ggplot2 ggraph igraph MuMIn pbapply phylolm purrr tibble tidyr]; }; + phylopath = derive2 { name="phylopath"; version="1.0.1"; sha256="135b0zhspjns8jdb2y5ajhziyglkr9f5x1618i71dr5848mfkpha"; depends=[ape dplyr ggm ggplot2 ggraph igraph MuMIn pbapply phylolm purrr tibble tidyr]; }; phyloseqGraphTest = derive2 { name="phyloseqGraphTest"; version="0.0.2"; sha256="1xgv2kf7j3ia5vk10r7w9588rfv7asdaf8f3yxwp5q7aqn3krm6q"; depends=[ggnetwork ggplot2 igraph intergraph phyloseq]; }; phylosignal = derive2 { name="phylosignal"; version="1.2"; sha256="0apsg4v1n58wn8y8wnl6x1ahl903i29hh8bs2dw6ky2jafkjj4jb"; depends=[adephylo ape boot DBI igraph phylobase Rcpp RcppArmadillo]; }; phylosim = derive2 { name="phylosim"; version="3.0.2"; sha256="148zm43cgdhr264ffcabjx4abykks07jix6lypqysqy25fbmdngk"; depends=[ape compoisson ggplot2 R_methodsS3 R_oo]; }; + phylotaR = derive2 { name="phylotaR"; version="1.0.0"; sha256="0plxc3l9fxxj9mfnhnpp5wrxyvxm292fxrwx2g8xysasmjb301v9"; depends=[ggplot2 igraph R_utils rentrez sys treeman treemapify XML]; }; phylotate = derive2 { name="phylotate"; version="1.2"; sha256="19nssrdax5w5a50159j39jgs7305s48k3h56ivyzs5di6l7x1yxj"; depends=[]; }; phylotools = derive2 { name="phylotools"; version="0.2.2"; sha256="1dhk1ncp5zi4zl1xfnjz64v983dm7bq7iimfjin80j0bdcpps44w"; depends=[ape]; }; - phyndr = derive2 { name="phyndr"; version="0.1.0"; sha256="03y3j4ik6flrksqm2dwh2cihn12hzfdik0fsak4zbxjdzaqn5gim"; depends=[ape]; }; phyreg = derive2 { name="phyreg"; version="1.0.2"; sha256="0m1psq79zl7h8791pl8g6i0ybda7vgddza8r9mwqhg4sw1q4bzcp"; depends=[]; }; - physiology = derive2 { name="physiology"; version="0.2.2"; sha256="0z394smbnmlrnp9ms5vjczc3avrcn5nxm8np5y58k86x470w6npz"; depends=[]; }; - phytools = derive2 { name="phytools"; version="0.6-44"; sha256="1y815pv1cksj244vcb7q4qr45gzr4cb1qwi166h65ryggywcj48w"; depends=[animation ape clusterGeneration coda combinat maps MASS mnormt msm nlme numDeriv phangorn plotrix scatterplot3d]; }; + physiology = derive2 { name="physiology"; version="1.0.1"; sha256="01vza10gfcab8xxq5xszg7yxnsg3cg1x9yhz05jdy34xir7p1jvf"; depends=[Rcpp]; }; + phytools = derive2 { name="phytools"; version="0.6-60"; sha256="0xxk2r2x81nxsvyggk44fpw3ppfsmmna8lrsy2xpw90da5cxgjjm"; depends=[animation ape clusterGeneration coda combinat expm maps MASS mnormt nlme numDeriv phangorn plotrix scatterplot3d]; }; phytotools = derive2 { name="phytotools"; version="1.0"; sha256="049znviv2vvzv23biy1l28axm7bc7biwmq4bnn0cnjqgkk48ysz3"; depends=[FME insol]; }; picante = derive2 { name="picante"; version="1.7"; sha256="0qhaxxmab3c3qw06kx4swfyiqiiqail5h79aarvffryvh0qdgr3m"; depends=[ape nlme vegan]; }; - picasso = derive2 { name="picasso"; version="1.2.0"; sha256="1bclrv0g2frdw6bfqacjbbzn9vg3354i2bh5zn6hkix7r8rqymzg"; depends=[MASS Matrix]; }; + picasso = derive2 { name="picasso"; version="1.3.0"; sha256="1s8whczkrxayw6syb4ffgfrxmcflxn31d53bdy9gxzndjd9rpd50"; depends=[MASS Matrix]; }; pid = derive2 { name="pid"; version="0.36"; sha256="1w6h09ddq8rv7k5xl4v6nhlkm0vnmim57mg0dzk2dv9dc4v8i141"; depends=[DoE_base FrF2 ggplot2 png]; }; - piecewiseSEM = derive2 { name="piecewiseSEM"; version="2.0.1"; sha256="1pi0jii0yhmvy0rqlchlijrhvdqa07i4wzj4cdd25bbjnfy97ayc"; depends=[car lme4 MASS nlme pbkrtest]; }; + piecewiseSEM = derive2 { name="piecewiseSEM"; version="2.0.2"; sha256="07vz90cghkbmcar9ps94wydvg4r7mj32pa7vjdmgm5j8dhxq8max"; depends=[car lme4 MASS nlme pbkrtest]; }; pifpaf = derive2 { name="pifpaf"; version="1.0.1"; sha256="0wj1fbhd871fnw7fjlbh0gdjz848mbwl1bzjp3cgmh9s7jnd2kci"; depends=[ggplot2 gridExtra MASS matrixcalc numDeriv sfsmisc]; }; - pillar = derive2 { name="pillar"; version="1.2.3"; sha256="1rzhssprqgam1nq3s0f5rzxhxsq02azcghvxf6k8kmsmddf1n7f8"; depends=[cli crayon rlang utf8]; }; + piggyback = derive2 { name="piggyback"; version="0.0.8"; sha256="1c17yjqpaj6r6spbhm901dilqpsa2s9jc029vdfmrxdk18fzaf1f"; depends=[clisymbols crayon fs gh git2r httr jsonlite lubridate magrittr memoise usethis]; }; + pillar = derive2 { name="pillar"; version="1.3.0"; sha256="1q6arybmfqxhp5zqj1fri5pb8v7ywcv7bmgf81rrmgl892p4bn5f"; depends=[cli crayon fansi rlang utf8]; }; pim = derive2 { name="pim"; version="2.0.1"; sha256="1m804clxc8m4nyzi4hhfy118527lgf2sb7589qd61fb83yh6hi8p"; depends=[BB nleqslv]; }; - pimeta = derive2 { name="pimeta"; version="1.0.1"; sha256="1l50k34xrnhfwwnwa7ym97blhqi84nkgcf9y5yg6hcg75ajgi6zl"; depends=[Rcpp RcppEigen]; }; - pinbasic = derive2 { name="pinbasic"; version="1.2.0"; sha256="1sn4q9g2pw8z6gyxi302bd7p578ldy1g6419w56z7jgv7m8n7g73"; depends=[fastcluster ggplot2 lubridate Rcpp reshape2 scales]; }; + pimeta = derive2 { name="pimeta"; version="1.1.1"; sha256="0ylna31x8491q6hppz827ngri0did0bfwy3nlifpagccb2m4psi3"; depends=[Rcpp RcppEigen]; }; + pinbasic = derive2 { name="pinbasic"; version="1.2.1"; sha256="0ciqqjhbhj1kvf4lkswqi5fc8m32lk2mwhyc96afvjvaig1xv5q8"; depends=[fastcluster ggplot2 lubridate Rcpp reshape2 scales]; }; pinfsc50 = derive2 { name="pinfsc50"; version="1.1.0"; sha256="1fja8xdqwsm4g223wmb2yg5fqmsg94hchzjd4qrqah1zb8vbdfdn"; depends=[]; }; + pingers = derive2 { name="pingers"; version="0.1.1"; sha256="09np6aph6rhvdh6mwky8a57i38bi2amwi7x91p9kfb2mzkql8k8w"; depends=[data_table dplyr lubridate plotly reshape2 stringr tibble tictoc tidyselect]; }; pingr = derive2 { name="pingr"; version="1.1.2"; sha256="17fh2gjlmwy6wy8i24q76fivjig8jm05g9kvfz81q0h6b5zxnpmg"; depends=[]; }; pinnacle_API = derive2 { name="pinnacle.API"; version="2.3.3"; sha256="1b6adns1xr3cgcj2mdjvl16cm2vjjgsj2l8m2c47plyc5jh05qmb"; depends=[data_table httr jsonlite magrittr openssl purrr rjson uuid]; }; pinnacle_data = derive2 { name="pinnacle.data"; version="0.1.4"; sha256="1sl36i2857b3xwx7iwgy8mkgjvz7nfa74ch1n8kcxbj59ib7mp8p"; depends=[tibble]; }; - pinp = derive2 { name="pinp"; version="0.0.5"; sha256="12wypniib0pacgd3lvk64r1xy01yangjk9k2b2pkj8il4ycvijk4"; depends=[knitr rmarkdown]; }; + pinp = derive2 { name="pinp"; version="0.0.6"; sha256="1424syaxq8p0ldqa0ybn0qyizs4r00xgkf6h5p7frhavy4rf8f2v"; depends=[knitr rmarkdown]; }; + pinyin = derive2 { name="pinyin"; version="1.1.4"; sha256="0qndd2mc95hbzkb0aqvmyhk2anwk7msd8xqy0rfiyrab94kxmgla"; depends=[data_table splitstackshape]; }; pipe_design = derive2 { name="pipe.design"; version="0.5.1"; sha256="0r0szkdzifxmnnbr6675w8ij4zwqgxj3gwahc7a74mxr51f7qh8j"; depends=[ggplot2 gtools xtable]; }; pipeGS = derive2 { name="pipeGS"; version="0.4"; sha256="0ki4i70r5f195b4jfv3hxlxz3zj57mhy2yf4984bwr11impilz5w"; depends=[]; }; pipeR = derive2 { name="pipeR"; version="0.6.1.3"; sha256="16lj227x24pviqb4dcrj7a55l31p5mm0cbwsb6m3y3n6k5wcd2nh"; depends=[]; }; @@ -9674,18 +10086,20 @@ in with self; { piton = derive2 { name="piton"; version="0.1.1"; sha256="1265y4lv2m5nwrh25sahjkxwmivpxgh9shrdidlmaman7zs6cclr"; depends=[Rcpp]; }; pivot = derive2 { name="pivot"; version="18.4.17"; sha256="0nhf76f2g35cx5f1m00wsy29n6xm2x5wajs5myaasks7hbkk0w3y"; depends=[assertthat colorspace DBI dbplyr dplyr lubridate magrittr purrr rlang tidyr tidyselect]; }; pivotaltrackR = derive2 { name="pivotaltrackR"; version="0.1.0"; sha256="024srncm288mn3bz6hv7ljzkchmnljk4yc2d4z7i05vsn7dzd2c6"; depends=[curl httr]; }; - pivottabler = derive2 { name="pivottabler"; version="0.4.0"; sha256="1q7gmfrqx3sn32q9rrr0y3hywq0fvm5gs5d3jj6mqcbs53jqvzqc"; depends=[data_table dplyr htmltools htmlwidgets jsonlite R6]; }; + pivottabler = derive2 { name="pivottabler"; version="1.0.0"; sha256="106q62bfnkmh328kdzshwz8v01pz2qiyxcgmfbn3rc0cd9ml6wyj"; depends=[data_table dplyr htmltools htmlwidgets jsonlite R6]; }; pixels = derive2 { name="pixels"; version="0.1.0"; sha256="0lna0z2shs49kh48ipjnyigaa22wb9gm4mq970ldhh9msb7wcv55"; depends=[htmlwidgets miniUI shiny]; }; - pixiedust = derive2 { name="pixiedust"; version="0.8.4"; sha256="0rq1q30x36p1135kv2s8nfshi8w73167dj14f4c5m3fczhljc7lr"; depends=[broom checkmate dplyr htmltools knitr labelVector magrittr scales tidyr]; }; + pixiedust = derive2 { name="pixiedust"; version="0.8.5"; sha256="1b3i2l6vzqbpycp9fw439k4jzdy19kvsjj4j6klfvdbkqf911hfw"; depends=[broom checkmate dplyr htmltools knitr labelVector magrittr scales tidyr]; }; pixmap = derive2 { name="pixmap"; version="0.4-11"; sha256="04klxp6jndw1bp6z40v20fbmdmdpfca2g0czmmmgbkark9s1183g"; depends=[]; }; pkgKitten = derive2 { name="pkgKitten"; version="0.1.4"; sha256="0c44zrvpyz87s5mjhsqdrkyrvyzhyldnq371bwnn9crbpbac3wnd"; depends=[]; }; - pkgbuild = derive2 { name="pkgbuild"; version="1.0.0"; sha256="10iz8057mixl9j73pq2cbp4ib6dadfsgi3fcsjjm7l3wwb9issd9"; depends=[callr crayon desc R6 rprojroot withr]; }; - pkgconfig = derive2 { name="pkgconfig"; version="2.0.1"; sha256="0h2sp93fqqjbfqgq82a3i94ybnndx6ghaal8pbf99firnsjb40mb"; depends=[]; }; + pkgbuild = derive2 { name="pkgbuild"; version="1.0.2"; sha256="1i1rrax7x7r2bplig5cfc50lx85jc4n9a3qmvbdviaj22wr2lghs"; depends=[callr cli crayon desc prettyunits R6 rprojroot withr]; }; + pkgconfig = derive2 { name="pkgconfig"; version="2.0.2"; sha256="1jk9ip549xphb3anfixqv1yx5kidnndqgy9v3qjpmgmds5a7g695"; depends=[]; }; pkgcopier = derive2 { name="pkgcopier"; version="0.0.1"; sha256="04vpjf8nvqnpry54f1wwrnmipd5m6gqd89c3vkryqx88jk85jd8s"; depends=[httr stringr]; }; pkgdown = derive2 { name="pkgdown"; version="1.1.0"; sha256="0w1f23d600j9s8sa5xq63j2p6pvch8nndcxc63s14szlfjlvmddd"; depends=[callr cli crayon desc devtools digest evaluate fs highlight httr magrittr MASS memoise purrr R6 rematch rlang rmarkdown roxygen2 rsconnect rstudioapi tibble whisker xml2 yaml]; }; pkggraph = derive2 { name="pkggraph"; version="0.2.2"; sha256="0pzqlim84b22ahq5yr50ybffqa0f5k5ch372v37nw1ndzci211d8"; depends=[curl data_table dplyr ggnetwork ggplot2 htmltools igraph intergraph Matrix network networkD3 plyr RColorBrewer tibble]; }; + pkgload = derive2 { name="pkgload"; version="1.0.1"; sha256="0mm0avvan528zbrcrxigl5fkd7za01fb0qhlqrqvm3ar0115cqa8"; depends=[desc pkgbuild rlang rprojroot rstudioapi withr]; }; pkgmaker = derive2 { name="pkgmaker"; version="0.27"; sha256="0spcamjncj78kzjps2rw4v1a4494yazv6xvhn0vmdflnypc8k8hp"; depends=[bibtex codetools digest magrittr registry stringi stringr withr xtable]; }; pkgnet = derive2 { name="pkgnet"; version="0.2.0"; sha256="0rbwpmkphsy51zncy2pv2cnf7v2dpk8gf8qwmbz4iyiq94kqri6f"; depends=[assertthat covr data_table DT futile_logger igraph knitr magrittr mvbutils R6 rmarkdown visNetwork]; }; + pkmon = derive2 { name="pkmon"; version="1.0"; sha256="0j2v4zlf7vgy5gld29xiii15m9i85cpiwc25rmzjm02cz2p32c72"; depends=[]; }; pkr = derive2 { name="pkr"; version="0.1.2"; sha256="0m045dlcq3rls1w0smy4jvk3c57ckpqdv8xnz261k1gnnyjmz1k2"; depends=[binr foreign forestplot rtf]; }; pks = derive2 { name="pks"; version="0.4-0"; sha256="0fx7p2d83x0ip65aqp9dga59d9cggam8k79mi0drk5birzchqbcr"; depends=[sets]; }; plRasch = derive2 { name="plRasch"; version="1.0"; sha256="1rnpvxw6pzl5f6zp4xl2wfndgvqz5l3kiv9sh4cpvhga0gl8zjaw"; depends=[survival]; }; @@ -9694,7 +10108,7 @@ in with self; { placement = derive2 { name="placement"; version="0.1.1"; sha256="1narjb90sb5prvzfv2x30bz8y9aq8hqggza91ghwi47m99vm1dg6"; depends=[base64enc digest jsonlite RCurl stringi urltools]; }; plan = derive2 { name="plan"; version="0.4-3"; sha256="0j3mvcy97r7adcs7q6z0w9ng74jcfwii1xp8kcl2cwbzs2fd425r"; depends=[]; }; planar = derive2 { name="planar"; version="1.6"; sha256="0x5xdb2afpc1w8s217hy765mz938kg5b5j7vzqzhlsh2dzdjccpj"; depends=[cubature dielectric ggplot2 plyr Rcpp RcppArmadillo reshape2 statmod]; }; - planor = derive2 { name="planor"; version="1.3-9"; sha256="0hivy4iqfw896d2zmcx5c3rmlfj8fkqg1qn2x8mdlial3dzm3mz6"; depends=[bit64 conf_design Rcpp RcppArmadillo]; }; + planor = derive2 { name="planor"; version="1.4-1"; sha256="1ci4wp18jjc8pjdn89vsz0nfdjif7fz6l5f6x6blqh9cz4hkkrlf"; depends=[bit64 conf_design Rcpp RcppArmadillo]; }; plantecophys = derive2 { name="plantecophys"; version="1.3-2"; sha256="1jj9rkhdmcnmp6fzbxmkfwmsdx2w7v923rv0xn5c5iv7wys7vwfm"; depends=[]; }; plaqr = derive2 { name="plaqr"; version="2.0"; sha256="15pdb57123m3cahvcsyrrvxjwxvs2f389yxip91gjxn68jf6cx1l"; depends=[quantreg]; }; plater = derive2 { name="plater"; version="1.0.1"; sha256="0v5b9r6iha18qvrjpbr1p8fy06nf31x63ch5cnb4axyqa0x5skpp"; depends=[dplyr]; }; @@ -9704,7 +10118,7 @@ in with self; { pleiades = derive2 { name="pleiades"; version="0.2.0"; sha256="1h3q4yf0w0al7n8l7ca4vgx2bhrrz8clli15svlds7n402s8rzp5"; depends=[crul DBI dbplyr dplyr gistr jsonlite rappdirs RSQLite]; }; pleio = derive2 { name="pleio"; version="1.5"; sha256="1y9nkv5bzfkzbl373405v3xq54nz37wjz9zkxfzl8ggr5i9lcbqy"; depends=[Matrix rms]; }; plfMA = derive2 { name="plfMA"; version="1.0.4"; sha256="0q6wiiknmgw812kcf9qq309zlizyry7ldn6m08lkw6xq6i4f4s85"; depends=[cairoDevice gWidgets gWidgetsRGtk2 limma RGtk2]; }; - plfm = derive2 { name="plfm"; version="2.2.1"; sha256="00x6yyr32rhh6696z5aazj98nyd01i26ij9hs2sxf6j677fmppdr"; depends=[abind sfsmisc]; }; + plfm = derive2 { name="plfm"; version="2.2.2"; sha256="1jgf3jrkdpsf77i4lf68s6sxax95c9is4nryhnzanq9i5f23j24v"; depends=[abind sfsmisc]; }; plgp = derive2 { name="plgp"; version="1.1-7"; sha256="02g6saabrsd8pra0szbwcbilf6w5ywg2gxqb5zdvbxds2vw36hn0"; depends=[mvtnorm tgp]; }; plink = derive2 { name="plink"; version="1.5-1"; sha256="0rn2i9i8af9aq0xgxhpcdchs2952lq2d2sg8x3js0zi3vcml76k0"; depends=[lattice MASS statmod]; }; plm = derive2 { name="plm"; version="1.6-6"; sha256="1a14a8zbqzm2a6z44haa0c23ax9j1jk72dhrkca8q0abbd5lkx85"; depends=[bdsmatrix Formula lattice lmtest MASS maxLik nlme sandwich zoo]; }; @@ -9721,22 +10135,23 @@ in with self; { plotSEMM = derive2 { name="plotSEMM"; version="2.4"; sha256="0fircrayhz92zvkigkyb1zpn07bvssqs1ip15p926zj3rl77fqgy"; depends=[MplusAutomation plotrix plyr Rcpp shiny]; }; plotfunctions = derive2 { name="plotfunctions"; version="1.3"; sha256="0cnmwkfjg45187j490sf01gxijhajrpi6j13hfckli2ysn6xrgz3"; depends=[]; }; plotluck = derive2 { name="plotluck"; version="1.1.0"; sha256="0arbvldg50lyn98vkrys1yjkkraz8jracwal4r2mlw991pnaikpp"; depends=[ggplot2 hexbin Hmisc plyr quantreg RColorBrewer scales]; }; - plotly = derive2 { name="plotly"; version="4.7.1"; sha256="0wj9lw7w28z8w9ip9vadv6sydjhqyg65kfiai9m3bndzz50b1m3w"; depends=[base64enc crosstalk data_table digest dplyr ggplot2 hexbin htmltools htmlwidgets httr jsonlite lazyeval magrittr purrr RColorBrewer scales tibble tidyr viridisLite]; }; + plotly = derive2 { name="plotly"; version="4.8.0"; sha256="19p8pa03q9mw5vaan7r56xgd13d90ssiz0flbrkvpfrir2105ybq"; depends=[base64enc crosstalk data_table digest dplyr ggplot2 hexbin htmltools htmlwidgets httr jsonlite lazyeval magrittr promises purrr RColorBrewer rlang scales tibble tidyr viridisLite]; }; plotlyGeoAssets = derive2 { name="plotlyGeoAssets"; version="0.0.1"; sha256="0if4cahihxm0b2k3r0w6qj91mwwsjy5zm289zk6myg65i7ijqly4"; depends=[]; }; - plotmo = derive2 { name="plotmo"; version="3.4.2"; sha256="19g3b0pjxzv1nd65q0aimgw16xyq451l8bgyfhvwxm30c4qyafd5"; depends=[plotrix TeachingDemos]; }; + plotmo = derive2 { name="plotmo"; version="3.5.0"; sha256="14v703ky45sw34iwbqna7f8hylzbnlqm2gnml7avdp2i8ycli8wb"; depends=[plotrix TeachingDemos]; }; plotpc = derive2 { name="plotpc"; version="1.0.4"; sha256="1sf7n7mfyaijldm24bc8r8pfm8pp9cyaja7am14z2wpj2j9f9vyq"; depends=[]; }; plotprotein = derive2 { name="plotprotein"; version="1.0"; sha256="14kfb4xxpfp8klz31kb7cpc39636ax2cx2483vqqkciccb28f0ks"; depends=[ade4 plotrix plyr seqinr XML]; }; - plotrix = derive2 { name="plotrix"; version="3.7-2"; sha256="0hx3xv94gzlyy7ny5k4mzs7w1798h1zka175m5bkzc524493cm88"; depends=[]; }; + plotrix = derive2 { name="plotrix"; version="3.7-4"; sha256="1hs0zwaqs34559girinvysjfbvznyn8znp9cwvkqx6k2cqvcjinj"; depends=[]; }; plotrr = derive2 { name="plotrr"; version="1.0.0"; sha256="07ilqpa3ypqb2gpnq23r9v4kkfxz06mcak9si9adr9sf6c7gqwxz"; depends=[dplyr ggplot2]; }; + plotscale = derive2 { name="plotscale"; version="0.1.6"; sha256="0h2g0rv1lh70nqmqydgg5swwnwmy08wbjajxyb1c2a716rad765j"; depends=[]; }; plotwidgets = derive2 { name="plotwidgets"; version="0.4"; sha256="1w7c9grw4pyyra230196yq32snr4wdg6xi8vh4dx5df2v500wz22"; depends=[]; }; - pls = derive2 { name="pls"; version="2.6-0"; sha256="15j59p5x0rkdrk7iqzkipsy50rsyjl31w8zxc4w3v1j5gzxhi1rx"; depends=[]; }; - plsRbeta = derive2 { name="plsRbeta"; version="0.2.2"; sha256="1ia3hngpzaav3gfcxajb1fxa2ljgbwd5xkrahc2bxi7wfdidngs5"; depends=[betareg boot Formula MASS mvtnorm plsdof plsRglm]; }; - plsRcox = derive2 { name="plsRcox"; version="1.7.3"; sha256="17x79ihl9xpahva9ibbipyp1z9crvwm3y5g7ynxfjq7rjxwvw13y"; depends=[kernlab lars mixOmics pls plsRglm risksetROC rms survAUC survcomp survival]; }; + pls = derive2 { name="pls"; version="2.7-0"; sha256="0xaqqgmdvfh7g7v1m4bcwjqzph68b9cq3bn4kjisfsadl54i5p2x"; depends=[]; }; + plsRbeta = derive2 { name="plsRbeta"; version="0.2.3"; sha256="0yk2pirgszpdf33zk9ijh776aw4f238sjmga3w06xbvwf8q2vw8j"; depends=[betareg boot Formula MASS mvtnorm plsdof plsRglm]; }; + plsRcox = derive2 { name="plsRcox"; version="1.7.3.1"; sha256="1ni1hx54qxk48nnypqd9j189vi4vph3lqg06r39mv7xa4ap8ypmv"; depends=[kernlab lars mixOmics pls plsRglm risksetROC rms survAUC survcomp survival]; }; plsRglm = derive2 { name="plsRglm"; version="1.2.3"; sha256="0qf3nh3nw6psqr12zw9r5vagrlpwav3xiv3rh7xra13zx821kr4g"; depends=[bipartite boot car mvtnorm]; }; plsVarSel = derive2 { name="plsVarSel"; version="0.9.4"; sha256="19xz7ds4jx5ql999mwn9zs983rlshf14y4nlah8cfy9gpi0vl1g1"; depends=[bdsmatrix genalg MASS mvtnorm pls progress]; }; plsdepot = derive2 { name="plsdepot"; version="0.1.17"; sha256="1i00wxr451xpfy6dnvcm11aqf9106jsh5hj7gpds22ysgm4iq5w4"; depends=[]; }; - plsdof = derive2 { name="plsdof"; version="0.2-7"; sha256="1z8z9m0nsnyy1fipzvm1srpxn3q6wjrlivmmki1f8plwkixkyc5y"; depends=[MASS]; }; - plsgenomics = derive2 { name="plsgenomics"; version="1.5-1"; sha256="0d2k3h2cwwhcv7mbxqypd7g6yp1l6j32n3wslm348zmcx50j9pn4"; depends=[boot fields MASS plyr reshape2 RhpcBLASctl]; }; + plsdof = derive2 { name="plsdof"; version="0.2-8"; sha256="00phvvb17s0y2f0xqwak7lp7bdx9lws3m5n5mbd9l8514pfdxcxc"; depends=[MASS]; }; + plsgenomics = derive2 { name="plsgenomics"; version="1.5-2"; sha256="1pvb50nv6jc99bm2hsxpzazg26y49yi24wwwim5xcjj6j1szbip4"; depends=[boot fields MASS plyr reshape2 RhpcBLASctl]; }; plspm = derive2 { name="plspm"; version="0.4.9"; sha256="03aj1ffq11hh931dbkxy9ba74xyvzmr1ylrj4fw1rbryrwqg89v6"; depends=[amap diagram shape tester turner]; }; plspm_formula = derive2 { name="plspm.formula"; version="1.0.1"; sha256="1i2d1q8pz21js1ci8afnqzcky430hh1iwf5f6jr3j9yr9gs365k5"; depends=[plspm]; }; plspolychaos = derive2 { name="plspolychaos"; version="1.1-1"; sha256="078arfv8z5nfrmsfi0n7hskmv394ysi6nhlskpy5cg37lqiwh0r1"; depends=[lhs MASS]; }; @@ -9747,13 +10162,14 @@ in with self; { plus = derive2 { name="plus"; version="1.0"; sha256="1l7lvnq7vahj8m7knmr4q3wj00ar7iq89j45a2dqn2bh0qyj68ls"; depends=[]; }; plusser = derive2 { name="plusser"; version="0.4-0"; sha256="1g100dh8cvn9q09j0jbkw4xmwjdp1lm4651369975fm99nrlp1j9"; depends=[lubridate plyr RCurl RJSONIO]; }; plyr = derive2 { name="plyr"; version="1.8.4"; sha256="1igar5pcjqh0jyxv0z3jah8rz617vfa86vw0r5c7c031b7bj5db0"; depends=[Rcpp]; }; - pmatch = derive2 { name="pmatch"; version="0.1.3"; sha256="1k83ysgc4dwms0k5knh2rj99l3kfclw9a29h2ksphy0g4r1ig9k3"; depends=[dplyr glue purrr rlang tibble]; }; + pmatch = derive2 { name="pmatch"; version="0.1.4"; sha256="1d04q3kh46pha4yn5xy6ax7qkw9bwrxfkh5x6y4nwsby5j3xw2c0"; depends=[dplyr foolbox glue magrittr purrr rlang tibble]; }; pmc = derive2 { name="pmc"; version="1.0.3"; sha256="06bsab09i9ydgsjx5i50kdb22ldp4g1v83a01kz3mswybi4lv9w2"; depends=[dplyr geiger ggplot2 ouch tidyr]; }; pmcgd = derive2 { name="pmcgd"; version="1.1"; sha256="1pybzvyjmzpcnxrjsas06diy3x83i1r5491s6ccyr63l56hs55d5"; depends=[mixture mnormt]; }; pmclust = derive2 { name="pmclust"; version="0.2-0"; sha256="1bpfix76ylmn5ds6y0v40mfad7znaa6dj5ngr4mzv96yy6mg13ns"; depends=[MASS pbdBASE pbdDMAT pbdMPI]; }; - pmhtutorial = derive2 { name="pmhtutorial"; version="1.2"; sha256="1dviqazdk3ggxwwyv20409w3qadka0gbcgviwyywssn2x4cg0vih"; depends=[mvtnorm Quandl]; }; - pmml = derive2 { name="pmml"; version="1.5.4"; sha256="1acld1x0z5rgyxb5id071s3zvf2vbv4b9nngvxrb63ay3yyy124b"; depends=[stringr XML]; }; - pmmlTransformations = derive2 { name="pmmlTransformations"; version="1.3.1"; sha256="1cxmp3fgsf3z71v6qpd9l9ilgda5knan7vqifxpgm8m7a30sp3f3"; depends=[]; }; + pmhtutorial = derive2 { name="pmhtutorial"; version="1.3"; sha256="1acrqjannyhg608g8ap3hj2r6krl0js44q8gsyk7lw0s0xr1k67v"; depends=[mvtnorm Quandl]; }; + pmml = derive2 { name="pmml"; version="1.5.6"; sha256="0w12gnjf7l59qws9cn87ay5xglixbpiir53ms6y4r0y3vn7xb8yn"; depends=[stringr XML]; }; + pmmlTransformations = derive2 { name="pmmlTransformations"; version="1.3.2"; sha256="1s222r0zj630gjsvi28wb5mbz9fky967m9jnpaj8nsqv3k9sgkcc"; depends=[]; }; + pmpp = derive2 { name="pmpp"; version="0.1.0"; sha256="1vmv7aav0rvp7kd5f16ym422ygw1wpnwrhmmp2w1c2fl8i263zh9"; depends=[data_table dplyr ggplot2 magrittr MASS Matrix minqa moments plm pracma]; }; pmr = derive2 { name="pmr"; version="1.2.5"; sha256="0dq97dfjmgxlhr3a2n20vyyzfmamcicw878hdxpw31lw02xs6yls"; depends=[]; }; pmultinom = derive2 { name="pmultinom"; version="1.0.0"; sha256="0p2amb3y4jl24r21fii1qpmdbn5pfgywrx8k7x1jxpg49rk7k0rp"; depends=[fftw]; }; pmxTools = derive2 { name="pmxTools"; version="0.1.0"; sha256="1a242c85ywk026vb778s8bjc331ww11rb15pai02wbvpw9x4kpa0"; depends=[GGally ggplot2 magrittr MASS PKNCA plyr stringr XML xpose]; }; @@ -9769,40 +10185,45 @@ in with self; { pointdensityP = derive2 { name="pointdensityP"; version="0.3.4"; sha256="0vv8j1yz8n2vmmp6bg2i8w3dchdbybsdxn3sk5d1ync2knih8l2s"; depends=[data_table]; }; poio = derive2 { name="poio"; version="0.0-3"; sha256="1smbnqjlicaqq2hswl910yiirzb9zikbk4pqxm9pwpixywj0nkys"; depends=[assertive_base assertive_files assertive_properties assertive_sets assertive_strings assertive_types devtools digest dplyr magrittr R6 stringi tibble whoami]; }; poisDoubleSamp = derive2 { name="poisDoubleSamp"; version="1.1"; sha256="13wyj9jf161218y4zjv2haavlmanihp9l59cvh7x8pfr9dh2dwr8"; depends=[Rcpp]; }; + poisFErobust = derive2 { name="poisFErobust"; version="1.0.1"; sha256="0qgwl5gb2rw043zb0h1rrv038ymsd72r8h9gqdr2xkfbi3mnr24r"; depends=[data_table glmmML]; }; poisbinom = derive2 { name="poisbinom"; version="1.0.1"; sha256="0mjxg0s3nck7qrmq4bbrhwxfwr6fqml54s9k8q1mkfzlifa7qyf7"; depends=[Rcpp]; }; poisson = derive2 { name="poisson"; version="1.0"; sha256="1diyf1b84sr6iai3ghd3kcp6fc6w7fan49wzs1lzvxxsmp15ag2d"; depends=[]; }; poisson_glm_mix = derive2 { name="poisson.glm.mix"; version="1.2"; sha256="0328m279jfa1fasi9ha304k4wcybzr7hldww7wn0cl7anfxykbv8"; depends=[]; }; + poissonMT = derive2 { name="poissonMT"; version="0.3-5"; sha256="14qkc8qz3423b13gp6gsp8cbb1nv9wwjjfa4i9zc15qy5i99ha26"; depends=[checkmate MASS robcbi robustbase]; }; poistweedie = derive2 { name="poistweedie"; version="1.0"; sha256="18992fafypds3qsb52c09fasm3hzlyh5zya6cw32wnhipmda643m"; depends=[]; }; poker = derive2 { name="poker"; version="0.8.8"; sha256="14ik77440z22k4kwq0p1fn7adzi0p8mh8j8hd7ayinvrab4b5r85"; depends=[]; }; polidata = derive2 { name="polidata"; version="0.1.0"; sha256="07641v0dnn161kyxx7viplkf8c3r51hd4hd5pzmcph4y4387r01i"; depends=[jsonlite RCurl]; }; - poliscidata = derive2 { name="poliscidata"; version="1.2.0"; sha256="0vn9wdlh3bi24mcq0r4ani2b0hhlg1za1z6fw8ikz7952gpacqk8"; depends=[abind car descr ENmisc gplots Hmisc plotrix plyr survey weights xtable]; }; - politeness = derive2 { name="politeness"; version="0.2.4"; sha256="0r8wsghznbkdl3nn1rh7wi3l9zggdrvi2yjish7inkd8ygs4p8x1"; depends=[data_table ggplot2 glmnet quanteda spacyr stringr textir tm]; }; - pollen = derive2 { name="pollen"; version="0.70.0"; sha256="1hk9sjxzwglj98ryic3m80lajzv1klnq9dl6i97c8f0ihbf97zdq"; depends=[dplyr lubridate purrr]; }; + poliscidata = derive2 { name="poliscidata"; version="2.2.3"; sha256="18mmdzf9hrfz36rh1rg1j5q1m131xadppy272y4f4yay0ljafbm2"; depends=[abind car descr ENmisc gplots Hmisc plotrix plyr survey weights xtable]; }; + politeness = derive2 { name="politeness"; version="0.2.5"; sha256="01lj7zxcijlibzjjvh70xq0qmjf8habqslxwj34h2chvffkakngg"; depends=[data_table ggplot2 glmnet quanteda spacyr stringr textir tm]; }; + pollen = derive2 { name="pollen"; version="0.71.0"; sha256="0g0g6n8y87jyk7l4s6xpdk60dz4lkg2xp5c5agakkrah8a233920"; depends=[dplyr lubridate purrr]; }; + pollimetry = derive2 { name="pollimetry"; version="1.0.0"; sha256="11a1ksbf9mgdp0yn823kiwka7vi5d93ivv7zsmhvjinmh3pxn1zb"; depends=[brms repmis]; }; pollstR = derive2 { name="pollstR"; version="2.0.1"; sha256="13g5z1hix1bmsxznq5qx82yf445rvvyn67ch9bihxm1hr4cr4sbl"; depends=[httr lubridate purrr stringr]; }; - polmineR = derive2 { name="polmineR"; version="0.7.8"; sha256="18dg0p74drc9awgiwsy3wkdc3z350kvsdsjhnm35047kqg67v2bc"; depends=[data_table DT jsonlite Matrix pbapply R6 RcppCWB slam stringi tm xml2]; }; + polmineR = derive2 { name="polmineR"; version="0.7.10"; sha256="0ynb9gpphwm1inyagxj5kfn15jbl0paydfy6hcjm4912ncf5bvri"; depends=[data_table DT jsonlite knitr Matrix pbapply R6 RcppCWB slam stringi tm xml2]; }; polspline = derive2 { name="polspline"; version="1.1.13"; sha256="08hz6wlaipjss3cfk0dvr7yy6fc7cd4hqv9finj40kkm5n262xck"; depends=[]; }; - polyCub = derive2 { name="polyCub"; version="0.6.1"; sha256="16nr83gmv6pnk89nqxh8ihzacb0y8l4lz05c8sp6whmr26ja9vnf"; depends=[sp]; }; - polyPK = derive2 { name="polyPK"; version="3.0.0"; sha256="1vdfsad2b9habvm2ikjgn7ihnm851q9lqmgqjlsl737ka1vsgisf"; depends=[circlize corrplot gplots Hmisc impute imputeLCMD mixOmics pcaMethods pkr plyr ropls samr sqldf xlsx]; }; + polyCub = derive2 { name="polyCub"; version="0.7.0"; sha256="0cigzpdas6alr3fc6w7dhn2pf4n5qc1jmvdjlqw4mvpajn034hid"; depends=[sp]; }; + polyPK = derive2 { name="polyPK"; version="3.1.0"; sha256="0cb83sq8iz4swr73vwhh8n4k62p6321nsy1sz5fba0wiicycxf55"; depends=[circlize corrplot gplots Hmisc impute imputeLCMD mixOmics pcaMethods pkr plyr ropls sqldf xlsx]; }; + polyRAD = derive2 { name="polyRAD"; version="0.5-0"; sha256="1g3s12x6m6v3mqz82xssyxh0kzjq2kx6p1bw2z5px06px4d8m7dx"; depends=[fastmatch pcaMethods Rcpp]; }; polySegratio = derive2 { name="polySegratio"; version="0.2-5"; sha256="0djw49mbhd7x6jr0f5qkb9akw3fw3ax4w9xv8iwa5f65q5gbxpdf"; depends=[gdata]; }; polySegratioMM = derive2 { name="polySegratioMM"; version="0.6-4"; sha256="162xj52566kaxgfk7c14170xx07isyjmqb9skvhrdg7sz20lc3l1"; depends=[coda gtools lattice polySegratio]; }; polyaAeppli = derive2 { name="polyaAeppli"; version="2.0"; sha256="0kyz3ap92xz7aqyviyrpggfmicy1gybrx7y19djsmixcwz53zqch"; depends=[]; }; polyapost = derive2 { name="polyapost"; version="1.5"; sha256="0r2h51l2y0sj0xahdzfy1lyq4kh166crh2j02sk85q577q9d883y"; depends=[boot rcdd]; }; polychaosbasics = derive2 { name="polychaosbasics"; version="1.1-1"; sha256="1kw5c4dmgpkbk2a30hh5n6xqpnbh6q2swxsdjkmcmhkwrzm4ylm2"; depends=[lhs MASS]; }; - polyclip = derive2 { name="polyclip"; version="1.9-0"; sha256="0c4xf5m1amig0glnq3nczrl3fww0g57xwkgb6qnkyc7l7chin9ac"; depends=[]; }; + polyclip = derive2 { name="polyclip"; version="1.9-1"; sha256="0r5izja3ns39as40al04vl4jz17d6cgbsb4sj16c9z9l3fzpimf5"; depends=[]; }; polycor = derive2 { name="polycor"; version="0.7-9"; sha256="0d0756faksviic5jrc47fg6l3wsm9r2wlbnxiw08563rv7shbvb7"; depends=[Matrix mvtnorm]; }; polyfreqs = derive2 { name="polyfreqs"; version="1.0.2"; sha256="13859vbpys5yj1qiapyzv9wlvi6x6k0rm335bsi1v07ch3x2bh3b"; depends=[Rcpp]; }; polyglot = derive2 { name="polyglot"; version="0.1.2"; sha256="01sb3ilr58252yw0b2669vjdf8574br0n2n0ffwd86gc9f3islb3"; depends=[]; }; - polymapR = derive2 { name="polymapR"; version="1.0.16"; sha256="0j9zsgm4v78scsl4bblrf2rs691296p1sdimqqzs03d56cgaky04"; depends=[combinat doParallel foreach igraph knitr MDSMap]; }; + polymapR = derive2 { name="polymapR"; version="1.0.17"; sha256="148mnkarrc9k15vy82f2wma6was8p41hg7wlv2kc50sn30v5gkwa"; depends=[combinat doParallel foreach igraph knitr MDSMap]; }; polynom = derive2 { name="polynom"; version="1.3-9"; sha256="1s4xxv5rvpigawknvq27v9vzvs83phfsj5h8mim2lmf5bj950nnk"; depends=[]; }; polypoly = derive2 { name="polypoly"; version="0.0.2"; sha256="00c1hrnf575awvh0rlsnf6nkgi9p3fnqhd1knamkgb4icwi5s46d"; depends=[ggplot2 reshape2 rlang tibble]; }; polysat = derive2 { name="polysat"; version="1.7-3"; sha256="155zcrjvpnqdzakmxqds17wmn5kl4rrkv9bqlxq8hrrly3nf6ynz"; depends=[Rcpp]; }; polywog = derive2 { name="polywog"; version="0.4-1"; sha256="02qk1cyvkd77mwlvhj1zzzi0bmy7qxz29j2v730wp7rz4w7h5x5n"; depends=[foreach Formula glmnet iterators Matrix miscTools ncvreg Rcpp stringr]; }; pom = derive2 { name="pom"; version="1.1"; sha256="02jv19apn0kmp1ric2cxajlaad2fmsz4nm4izd2c3691vzas7l83"; depends=[matrixcalc]; }; - pomp = derive2 { name="pomp"; version="1.17"; sha256="0f7706hgpa70b5l1p34yq57fqyk4w55z8d5rvsv03m2cxilngc9k"; depends=[coda deSolve digest mvtnorm nloptr subplex]; }; - pompom = derive2 { name="pompom"; version="0.1.4"; sha256="0j37gq6lfccypclhrp7w3yfgsjbhfgqwg7x87r6rgywz6b3fnsgh"; depends=[ggplot2 lavaan qgraph reshape2]; }; + pomp = derive2 { name="pomp"; version="1.18"; sha256="0x77vx09ps4p1ihcd6yb4halr8jsq67d8zc04hp6vqkk0s7ycvyx"; depends=[coda deSolve digest mvtnorm nloptr subplex]; }; + pompom = derive2 { name="pompom"; version="0.2.0"; sha256="1alz3lrj7m16vhymsvvrcmf0kmgx88q2f3v4j6wiciqv77bnyai1"; depends=[ggplot2 lavaan qgraph reshape2]; }; pooh = derive2 { name="pooh"; version="0.3-2"; sha256="0qwa5j91aypasvsf4xcfbl6lz7llawdr38jiflzmfak2ad72rv7j"; depends=[]; }; pool = derive2 { name="pool"; version="0.1.4.1"; sha256="1a8kyfwylr8gl2z2w2fmf6657yqvw0ylf1pxg00flddf8fnwbh0w"; depends=[DBI dbplyr dplyr later R6]; }; - poolfstat = derive2 { name="poolfstat"; version="0.0.1"; sha256="1g6qx4518cr77wdlbicda68jm2yji24h14mjv5sq7zq241h4ailh"; depends=[]; }; + poolVIM = derive2 { name="poolVIM"; version="1.0.0"; sha256="19yw6pp5l3jmla4wjbvpjq132f645yks49pzsdv123f3qfr8f0m6"; depends=[EmpiricalBrownsMethod Hmisc ranger]; }; + poolfstat = derive2 { name="poolfstat"; version="1.0.0"; sha256="15s9zs13x9w5lxxibkpg40sg2hgaqfx1gbcpdq4yb0zpjpjlg9x1"; depends=[]; }; pooling = derive2 { name="pooling"; version="1.1.1"; sha256="0011w80pxz01scj2sa69m1bcfq797hq3ihpw46fdlxsxavz8prwy"; depends=[cubature dplyr dvmisc ggplot2 ggrepel mvtnorm pracma]; }; pop = derive2 { name="pop"; version="0.1"; sha256="0hbxdrkasb69x7ipddvyrzl5vvc7dd6rzj1vy7v3chg3rzgq89cj"; depends=[igraph MASS]; }; pop_wolf = derive2 { name="pop.wolf"; version="0.1"; sha256="19n00xv47v9j7slvm2ykzlksjfwjzimf88b3nk0y0192c29sdc9x"; depends=[abind]; }; @@ -9814,18 +10235,22 @@ in with self; { popdemo = derive2 { name="popdemo"; version="1.3-0"; sha256="0760ajqaq822m0j092gdqzhgw1mk413k09mmmwyzb0jzj6bd15q3"; depends=[expm MCMCpack]; }; popkin = derive2 { name="popkin"; version="1.0.5"; sha256="147ic0d7cgs4x9vz4jm4wd6ckikn0s8a0q1mknmcrcfisq8zim75"; depends=[RColorBrewer Rcpp RcppEigen]; }; poplite = derive2 { name="poplite"; version="0.99.19"; sha256="0y1l21clp9b5m50chqnqmvyd6rsk6xgn2bqf1877gx3h1qidh5fm"; depends=[DBI dbplyr dplyr igraph lazyeval RSQLite]; }; - poppr = derive2 { name="poppr"; version="2.8.0"; sha256="132lfxcdqxhh3f09sdgwas4372yrqcflws936fqyp0isg59siyzx"; depends=[ade4 adegenet ape boot dplyr ggplot2 igraph magrittr pegas phangorn polysat rlang shiny vegan]; }; + poppr = derive2 { name="poppr"; version="2.8.1"; sha256="1pl6lqbcrqrzz28cs70ki8bp749af4b8a9dk1bcdwg290vxzqywp"; depends=[ade4 adegenet ape boot dplyr ggplot2 igraph magrittr pegas phangorn polysat rlang shiny vegan]; }; popprxl = derive2 { name="popprxl"; version="0.1.4"; sha256="076aia4qbq5yw2nxafq2ys5n5c7wv77i8k1nmzb3all193vjf203"; depends=[poppr readxl]; }; popsom = derive2 { name="popsom"; version="4.2"; sha256="11d6z3qsq94k0557pnwa0h4pc718360lvg9jkblp8abnj52lcvvv"; depends=[class fields ggplot2 som]; }; poptrend = derive2 { name="poptrend"; version="0.1.0"; sha256="0hypxpb18azg6q1mqrphbx3x262h9ybwhlkb8fyd6vr7jjb5wn3h"; depends=[mgcv]; }; population = derive2 { name="population"; version="0.2"; sha256="1k0hwh17dyfbbyw8gprsz1klx6l2ncq5mxkmnjmknlnrkpah0bbl"; depends=[abind]; }; - populationPDXdesign = derive2 { name="populationPDXdesign"; version="1.0.2"; sha256="00xfpfd1ly2cv82x5r9sy1h7gq2yhhw2gz0sw3z1cpk9vxzvr6d9"; depends=[devtools ggplot2 plyr roxygen2 shiny shinycssloaders]; }; - portes = derive2 { name="portes"; version="2.1-4"; sha256="09liy2bia76h5dh21s8skq9pj8k4wpq5agwrmr1pnvlpgc8m2b60"; depends=[]; }; + populationPDXdesign = derive2 { name="populationPDXdesign"; version="1.0.3"; sha256="0p73ddv3j1s1vs4j3axnsf39n626qjv0w1qlq9p7km4s6729bhgv"; depends=[devtools ggplot2 plyr roxygen2 shiny shinycssloaders]; }; + portes = derive2 { name="portes"; version="3.0"; sha256="144fipskh6yb6xcz3m5bgh2kwjwa58zaw24y88hzzrdvh9glvyrc"; depends=[forecast]; }; portfolio = derive2 { name="portfolio"; version="0.4-7"; sha256="0gs1a4qh68xsvl7yi6mz67lamwlqyqjbljpyax795piv46kkm06p"; depends=[lattice nlme]; }; + portfolio_optimization = derive2 { name="portfolio.optimization"; version="1.0-0"; sha256="1rdhwffsjc1pa1qq7rqy6dwk8yrcblkmijz94p2w7sf2v4jmwxxr"; depends=[magrittr MASS modopt_matlab xts]; }; portfolioSim = derive2 { name="portfolioSim"; version="0.2-7"; sha256="1vf46882ys06ia6gfiibxx1b1g81xrg0zzman9hvsj4iky3pwbar"; depends=[lattice portfolio]; }; + portsort = derive2 { name="portsort"; version="0.1.0"; sha256="0swl39dn7lzwvps18bva4l64a441gkf6lbwcwrhlf93f1ardvxji"; depends=[xts zoo]; }; postGIStools = derive2 { name="postGIStools"; version="0.2.2"; sha256="1d1igv17bj17d0nmavvn5814nqb7k0hs2cjbaqgjd6ip1wcclfxz"; depends=[DBI jsonlite rgdal rgeos RPostgreSQL sp stringr]; }; + postal = derive2 { name="postal"; version="0.1.0"; sha256="1cg9fyiraawxmmfm15lzxwv7pqizjbyrr5aqm8aqrg928ynjy3q9"; depends=[curl dplyr glue janitor jsonlite lubridate magrittr purrr readr stringr tibble tidyr]; }; postlightmercury = derive2 { name="postlightmercury"; version="1.2"; sha256="1345ckp50jplcdqp3a250c6mhapqh9322jzpxj5dyqmbg2nmgp9i"; depends=[crul jsonlite purrr rvest tibble xml2]; }; potts = derive2 { name="potts"; version="0.5-7"; sha256="194996wr4rnpr42xqfi5yrcnxvd82all2fxki95dklr2qfjxg98a"; depends=[]; }; + powdR = derive2 { name="powdR"; version="0.1.0"; sha256="0a2n33x16920v3z909hcnkdi6hp2id3j89svn2qp9g57f9md0hi1"; depends=[ggplot2 ggpubr plotly reshape shiny]; }; powdist = derive2 { name="powdist"; version="0.1.4"; sha256="1my88ag5q9hwkn2wy79jl9008gpvg0bsrnyc81gkdfi7pjh2mp1z"; depends=[gamlss_dist normalp rmutil]; }; poweRlaw = derive2 { name="poweRlaw"; version="0.70.1"; sha256="04sr0nhdd1v915m0zf5gasznzgi08ykcy20kkwdw0l5mvvdbic8m"; depends=[VGAM]; }; powell = derive2 { name="powell"; version="1.0-0"; sha256="160i4ki3ymvq08szaxshqlz7w063493j5zqvnw6cgjmxs7y0vj8y"; depends=[]; }; @@ -9836,39 +10261,39 @@ in with self; { powerMediation = derive2 { name="powerMediation"; version="0.2.9"; sha256="1rk8h8qn4b68ra5h5hiy9fvvbpskj9y806rwrvl1l7gs7xlmji7l"; depends=[]; }; powerSurvEpi = derive2 { name="powerSurvEpi"; version="0.1.0"; sha256="1xxicvw113mc2y889rklws3xml5z64sgjpn4wg95gbw6nadch7zz"; depends=[survival]; }; powerbydesign = derive2 { name="powerbydesign"; version="1.0.4"; sha256="0xd4hylx7jl4ksycz5gfjcgy92mh5c9d4r34ap1g81ybmyk7yrsj"; depends=[gdata ggplot2 lme4 MASS plyr reshape2 stringr]; }; - powerlmm = derive2 { name="powerlmm"; version="0.3.0"; sha256="1prg1dw0pzyz4vc7a936bgx56227ab34b3ipwxn1mm8n03xk1zqc"; depends=[lme4 MASS Matrix scales]; }; + powerlmm = derive2 { name="powerlmm"; version="0.4.0"; sha256="0dpfvbp54lhz7ibzihqqrbl45s6dqxn6qyvv39mk2166hjcgi1h2"; depends=[lme4 MASS Matrix scales]; }; powerpkg = derive2 { name="powerpkg"; version="1.5"; sha256="0mbk2fda2fvyp1h5lk5b1fg398xybbjv0z6kdx7w7xj345misf7l"; depends=[]; }; powerplus = derive2 { name="powerplus"; version="3.1"; sha256="0ayp6x34hkzgris4j3zbbs0r23n81bhww3wgfyy630ri4sk6brrn"; depends=[complexplus expm MASS Matrix phonTools]; }; ppcSpatial = derive2 { name="ppcSpatial"; version="0.2.0"; sha256="1gi57zngc42wcrihg29nn7qa3gaq105ckp76qmczkldshlpd7x4r"; depends=[dplyr ggplot2 htmltools htmlwidgets leaflet magrittr PakPC2017 rgdal scales shiny tidyr tmap]; }; ppcc = derive2 { name="ppcc"; version="1.0"; sha256="022c8w7ws7fw6yy572rn6m8ki14d2ph7nd2hk2c6mmx2c4lbc20v"; depends=[]; }; ppclust = derive2 { name="ppclust"; version="0.1.1"; sha256="10fcyayda634lg5g992g21casqx5k0jni9r30km5rczzib7cz9gg"; depends=[inaparc MASS]; }; ppcor = derive2 { name="ppcor"; version="1.1"; sha256="1x9b2kb8s0bp92b17gby0jwzzr3i4cf3ap9c4nq7m8fav72g0y3a"; depends=[MASS]; }; + ppgmmga = derive2 { name="ppgmmga"; version="1.0.1"; sha256="16pvpfx353wjn317d3gxfgv6g20prnzwyqrmk0n4pz646mxq9i19"; depends=[cli crayon GA ggplot2 ggthemes mclust Rcpp RcppArmadillo]; }; ppitables = derive2 { name="ppitables"; version="0.2.0"; sha256="097rrkgv1xvn00gcmv9mfy4qwx4f4wjaj4j0c2az6smkhnzyr37n"; depends=[tibble tidyr]; }; - ppls = derive2 { name="ppls"; version="1.6-1"; sha256="1r3h4pf79bkzpqdvyg33nwjabsqfv7r8a4ziq2zwx5vvm7mdy7pd"; depends=[MASS]; }; + ppls = derive2 { name="ppls"; version="1.6-1.1"; sha256="1zyrisy3c4cz896j1bjh61sf57wdl9p8ywdq268cl819szfq78mx"; depends=[MASS]; }; ppmlasso = derive2 { name="ppmlasso"; version="1.1"; sha256="1w13p1wjl1csds1xfc79m44rlym9id9gwnp3q0bzw05f35zbfryg"; depends=[spatstat]; }; pps = derive2 { name="pps"; version="0.94"; sha256="0sirxpagqc2ghc01zc6q4dk691six9wkgknfbwaqxbxvda3hcmyq"; depends=[]; }; ppsbm = derive2 { name="ppsbm"; version="0.2.2"; sha256="0y4whxv14jqx7mqxj7n427vpbxb5rkwj8xvx0mj4knnwy9v437z4"; depends=[clue gtools Rfast]; }; pqantimalarials = derive2 { name="pqantimalarials"; version="0.2"; sha256="0azxkf1rvk9cyzr4gbp4y2vcxrxw3d4f002d5gjkvv1f4kx8faw1"; depends=[plyr RColorBrewer reshape2 shiny]; }; prLogistic = derive2 { name="prLogistic"; version="1.2"; sha256="1abwz7nqkz2qbyqyr603kl9a3rkad3f4vxhck6a9kl80xrmfrj9s"; depends=[boot Hmisc lme4]; }; prabclus = derive2 { name="prabclus"; version="2.2-6"; sha256="0qjsxrx6yv338bxm4ki0w9h8hind1l98abdrz828588bwj02jya1"; depends=[MASS mclust]; }; - pracma = derive2 { name="pracma"; version="2.1.4"; sha256="1ygm81i7mqvh229dp9935djjyb120p3bqvaf4k572sa4q63fzjhc"; depends=[]; }; + pracma = derive2 { name="pracma"; version="2.1.8"; sha256="0m8ladhrfyxwybblkcdgg4xv1mk5kibmwarpj2k0c2y34zzcix4z"; depends=[]; }; pragma = derive2 { name="pragma"; version="0.1.3"; sha256="1n30a346pph4d8cj4p4qx2l6fnwhkxa8yxdisx47pix376ljpjfx"; depends=[]; }; - prais = derive2 { name="prais"; version="0.1.1"; sha256="0vv6h12gsbipi0gnq0w6xh6qvnvc0ydn341g1gnn3zc2n7cx8zcn"; depends=[]; }; + prais = derive2 { name="prais"; version="1.0.0"; sha256="176878dyfqfx9x2cd97c43qb0gn0rs04jn3268n9yksfsxmrr4wx"; depends=[]; }; praise = derive2 { name="praise"; version="1.0.0"; sha256="1gfyypnvmih97p2r0php9qa39grzqpsdbq5g0fdsbpq5zms5w0sw"; depends=[]; }; praktikum = derive2 { name="praktikum"; version="0.1"; sha256="0kkydgglvqw371fxh46fi86fmdndhwq1n8qj0ynbh2gz1cn86aw1"; depends=[]; }; praznik = derive2 { name="praznik"; version="5.0.0"; sha256="01xbhcgvq6mf89ryh2gif7aa9956kpka3j4mqaxlglxs53vdrfnk"; depends=[]; }; - prc = derive2 { name="prc"; version="2018.1-31"; sha256="0xvf1f202qwpjb1kh469jk45l592q7bfzngyi8ifry94bi7mphp7"; depends=[kyotil nlme]; }; + prc = derive2 { name="prc"; version="2018.8-17"; sha256="13w6nqid3dqmzr39g14g0kgx727qvimyb20x0i206lj37cl347i2"; depends=[kyotil nlme]; }; prcbench = derive2 { name="prcbench"; version="0.7.3"; sha256="0xdmwjhxpcdaiqawhmlpr4ddlx22xk3rywa70jpm1vk5hc9pwivk"; depends=[assertthat ggplot2 gridExtra memoise precrec PRROC R6 rJava ROCR]; }; prclust = derive2 { name="prclust"; version="1.3"; sha256="0p0sf8248aigs99py8mpzz743jnrf7n1nv5shag15arxz9yx7zn3"; depends=[Rcpp]; }; prcr = derive2 { name="prcr"; version="0.1.5"; sha256="1hfr0jijnj5nd25rh16i81bsz8kwz0q9vmn7bqgy467cwvypg9k2"; depends=[class dplyr ggplot2 irr lpSolve purrr tibble tidyr]; }; - pre = derive2 { name="pre"; version="0.5.0"; sha256="04dfn9nd0ikilz7cf7q0y7z5dn961jjg1gby7h46fixkwnf7fdfs"; depends=[earth Formula glmnet partykit rpart stringr]; }; + pre = derive2 { name="pre"; version="0.6.0"; sha256="19dxm2khdw9cizxm06z41ywl2imrc9nw42ldcpjm30qfa0xqldjn"; depends=[earth Formula glmnet partykit rpart stringr survival]; }; preText = derive2 { name="preText"; version="0.6.2"; sha256="0pcnqssv542cfajzrqfsbq0jf628nnmcb3nryvd7d5wk4wdkji4q"; depends=[cowplot ecodist ggplot2 proxy quanteda reshape2 topicmodels vegan]; }; precintcon = derive2 { name="precintcon"; version="2.3.0"; sha256="1sf0mfqa77aqhbx3hg8pv582ibmfnv6vigqcd3xqsbq7nigy2ms9"; depends=[ggplot2 scales]; }; precrec = derive2 { name="precrec"; version="0.9.1"; sha256="0kppl4x8ji8hzll5wss1nzlk8qvf4g78f14x4c2b8dcxjikgl939"; depends=[assertthat data_table ggplot2 gridExtra Rcpp]; }; - predatory = derive2 { name="predatory"; version="1.2"; sha256="1qbkifx16ixzimshm8lsg3d1y7cj453ksn8cpwy03xql6b19r8x4"; depends=[readr stringr]; }; prediction = derive2 { name="prediction"; version="0.3.6"; sha256="19d7312f5lkqfglfvlgssnvyw7gl161s0xradcry44r1i6qp05j1"; depends=[data_table]; }; predictionInterval = derive2 { name="predictionInterval"; version="1.0.0"; sha256="029hc57cblfcbqckrghf95l2rkn7acgb4yr36da01bx8bmpww0bn"; depends=[ggplot2 MASS MBESS pbapply]; }; - predictmeans = derive2 { name="predictmeans"; version="0.99"; sha256="1qfqh21d3m0k2491hv5rl5k4v49j5089xsdk3bxicp30l512rax0"; depends=[ggplot2 lattice lme4 nlme pbkrtest plyr]; }; + predictmeans = derive2 { name="predictmeans"; version="1.0.1"; sha256="06zspg1v0x1qqaah7xj5jdaqjv7asnzmgybyyzx3j26v4h59p350"; depends=[ggplot2 lme4 Matrix nlme numDeriv pbkrtest plyr]; }; predkmeans = derive2 { name="predkmeans"; version="0.1.0"; sha256="1xmzdv35hxnslffkj8nbahhxrxmv7995pkdq2igw72x9wbryqlhs"; depends=[e1071 maxLik mgcv Rcpp RcppArmadillo]; }; predmixcor = derive2 { name="predmixcor"; version="1.1-1"; sha256="0v99as0dzn0lqnbbzycq9j885rgsa1cy4qgbya37bbjd01b3pykd"; depends=[]; }; predtoolsTS = derive2 { name="predtoolsTS"; version="0.1.1"; sha256="0f9fapw9yjdzj6pwcskbyfwjsvg09ahn20vrv4bgi0dx8am291rl"; depends=[caret forecast Metrics tseries TSPred]; }; @@ -9884,20 +10309,20 @@ in with self; { presens = derive2 { name="presens"; version="2.1.0"; sha256="175nr9pqn3m6kh9bcc1gxqmqv05xdsqdw9lx385lmm1g947d2159"; depends=[marelac measurements]; }; preseqR = derive2 { name="preseqR"; version="4.0.0"; sha256="1g2rnnmi45649vpy6z45v5i3wxm54s138ajqrzwi3a5r7x3xnhq1"; depends=[polynom]; }; prettyGraphs = derive2 { name="prettyGraphs"; version="2.1.5"; sha256="19jag5cymancxy5lvkj5mkhdbxr37pciqj4vdvmxr82mvw3d75m4"; depends=[]; }; - prettyR = derive2 { name="prettyR"; version="2.2"; sha256="026cgbrqs799lg06qlwx1r9ramil790qxrb1cyl4w7mzf8sfpgn9"; depends=[]; }; - prettycode = derive2 { name="prettycode"; version="1.0.1"; sha256="0iw38q5yx92m71wrbp52d14bl3nqwpjrd57l2w9chasmlrjnl2aw"; depends=[crayon withr]; }; + prettyR = derive2 { name="prettyR"; version="2.2-2"; sha256="01p0g68c6k5hd4a80gmdsqd5sxy6n521ry5sh6iz06f0rbl3jlcf"; depends=[]; }; + prettycode = derive2 { name="prettycode"; version="1.0.2"; sha256="0yz75qqpvrk4p9mypjnmrg1xwlrhh2iax2897f11cfk8rjj784jg"; depends=[crayon withr]; }; prettydoc = derive2 { name="prettydoc"; version="0.2.1"; sha256="00amqn0izg2jrn96pmm5papqmp0chn25msjk94nim3avqg9x4x92"; depends=[rmarkdown]; }; prettymapr = derive2 { name="prettymapr"; version="0.2.2"; sha256="151jp0l728krmxcyzwjh01mvd1zhqijq0nsgjaqsh0q8n3jmndi0"; depends=[digest httr plyr rjson]; }; prettyunits = derive2 { name="prettyunits"; version="1.0.2"; sha256="0p3z42hnk53x7ky4d1dr2brf7p8gv3agxr71i99m01n2hq2ri91m"; depends=[assertthat magrittr]; }; prevR = derive2 { name="prevR"; version="3.3"; sha256="11syifnv0mgbybsphgaj3a2j29p2q0l4y4w008n2r9s359arjj8m"; depends=[directlabels fields foreign GenKern ggplot2 gstat maptools rgdal sp]; }; prevalence = derive2 { name="prevalence"; version="0.4.0"; sha256="0vnmglxj1p66sgkw4ffc4wgn0w4s281fk2yifx5cn4svwijv30q0"; depends=[coda rjags]; }; - pricesensitivitymeter = derive2 { name="pricesensitivitymeter"; version="0.3.2"; sha256="0hmqhsbpf8sbk5285mm8g0gi0s7s05dzbdci4fp3xyjn30659gdr"; depends=[]; }; + pricesensitivitymeter = derive2 { name="pricesensitivitymeter"; version="0.4.1"; sha256="1mk6i4rjcm938rpwd3b80y9x4vj45jsddzprzrig91dmmjp6b11i"; depends=[]; }; prim = derive2 { name="prim"; version="1.0.16"; sha256="0i5jpk798qbvyv9adgjbzpg4dvf7x51bcgbdp38fzdnam6g88y5a"; depends=[misc3d rgl]; }; primefactr = derive2 { name="primefactr"; version="0.1.1"; sha256="11hi75jwjxrl9p5m8yjwjb20pc9y9vkhi8sjrnisdq2hm53m483w"; depends=[]; }; primer = derive2 { name="primer"; version="1.0"; sha256="0vkq794a9qmz9klgzz7xz35msnmhdaq3f91lcix762wlchz6v7sg"; depends=[deSolve lattice]; }; primerTree = derive2 { name="primerTree"; version="1.0.3"; sha256="0k81h6ln9yjg3r4j8n5f8g8xlrq1pvrr5ywrw16s4mjjhx3r1ylg"; depends=[ape directlabels foreach ggplot2 gridExtra httr lubridate plyr scales stringr XML]; }; primes = derive2 { name="primes"; version="0.1.0"; sha256="0hhkgpkadvai9xcivfalsvr5w0irsxygyz3p2zngwl3g5rvvh5g9"; depends=[Rcpp]; }; - princurve = derive2 { name="princurve"; version="2.0.3"; sha256="1yc14nychxk2ddhqd2v7cfpx5hgdspxcrg42kvs5jvic54dbjjc2"; depends=[Rcpp]; }; + princurve = derive2 { name="princurve"; version="2.1.3"; sha256="12ngs63n6qjx08ks99h8m2nyr3h8ygznq5j8ag6ic8p65pis5pdp"; depends=[Rcpp]; }; prinsimp = derive2 { name="prinsimp"; version="0.8-8"; sha256="074a27ml0x0m23hlznv6qz6wvfqkv08qxh3v1sbkl9nxrc7ak4vn"; depends=[]; }; printr = derive2 { name="printr"; version="0.1"; sha256="13yqqcwfqnbhvcxwrr6j45qhnbxng3qwn2ygkr809gibg9grw471"; depends=[knitr]; }; prioritizr = derive2 { name="prioritizr"; version="4.0.2"; sha256="1v5bkarsgi40w9afalsjfgl7azd1q4lzwr0ipw761cnqcnhkkmkh"; depends=[ape assertthat BH data_table doParallel igraph magrittr Matrix plyr proto raster Rcpp RcppArmadillo rgeos sp tibble uuid]; }; @@ -9907,22 +10332,25 @@ in with self; { prisonbrief = derive2 { name="prisonbrief"; version="0.1.0"; sha256="1fnhg6vqdabdnhvgd19vnkfrdgz8a53snfrx6m6mmdwb6cvavb8m"; depends=[data_table dplyr httr magrittr passport rlang rnaturalearth rnaturalearthdata rvest stringr tibble tidyr xml2]; }; pro = derive2 { name="pro"; version="0.1.1"; sha256="0f0iliq7bhf313hi0jbwavljic4laxfc0n3gac5y6hzm39gvvgag"; depends=[]; }; proPubBills = derive2 { name="proPubBills"; version="0.1"; sha256="1fpn9x31jjahdyk0f30mbb3ijj4dsghrq9q94r04pjsgr2jw23zx"; depends=[dplyr httr stringr]; }; + prob = derive2 { name="prob"; version="1.0-1"; sha256="05qcrsl790hn7p3ap4zj5i1b1sf674wvvrh42lyb7a0nsc09iq9n"; depends=[combinat fAsianOptions]; }; probFDA = derive2 { name="probFDA"; version="1.0.1"; sha256="093k50kyady54rkrz0n9x9z98z5ws36phlj42j25yip7pzhfd6sv"; depends=[MASS]; }; probemod = derive2 { name="probemod"; version="0.2.1"; sha256="1cgjr03amssc9rng8ky4w3abhhijj0d2byzm118dfdjzrgmnrf9g"; depends=[]; }; probout = derive2 { name="probout"; version="1.1.1"; sha256="1hasrvxdig8n3fhzsbmq27050dyanzp1j0qlybnrkb41k9gyljda"; depends=[FNN MASS mclust]; }; probsvm = derive2 { name="probsvm"; version="1.00"; sha256="1k0zysym7ncmjy9h7whwi49qsfkpxfk7chfdjrydl6hn6pscis37"; depends=[kernlab]; }; proccalibrad = derive2 { name="proccalibrad"; version="0.14"; sha256="0vr55rpcqh9wvy3bklssrimp42x85w3sanjgshfij657v68vmx46"; depends=[]; }; - processanimateR = derive2 { name="processanimateR"; version="0.1.1"; sha256="1him2rdamg4q2kidc7a95pgihhcwfaz678cgdxgzz563dlgqkgac"; depends=[bupaR DiagrammeR DiagrammeRsvg dplyr htmlwidgets magrittr processmapR RColorBrewer rlang scales shiny shinycssloaders tidyr zoo]; }; + processanimateR = derive2 { name="processanimateR"; version="0.3.0"; sha256="18bzn4x0aiv1z0ips2wkyb5pvdbq1fxh4mi430i44qn64z88wasi"; depends=[bupaR DiagrammeR dplyr htmlwidgets magrittr processmapR rlang scales zoo]; }; + processcheckR = derive2 { name="processcheckR"; version="0.1.0"; sha256="1arckp3m9z9idq8dq6aghijc6h8i6giir606h1viivrwj0ks0f90"; depends=[bupaR dplyr edeaR glue rlang stringr]; }; processcontrol = derive2 { name="processcontrol"; version="0.1.0"; sha256="0c0bksgq24blfkdgp5bn49sjnaajrg5bag8qzb5zffxbhnm4s30x"; depends=[plyr]; }; processmapR = derive2 { name="processmapR"; version="0.3.2"; sha256="0j42791qarxrn5ianbndbx0rkq6av4gvrxjl92svzki1mv5cl59n"; depends=[bupaR data_table DiagrammeR dplyr edeaR forcats ggplot2 ggthemes glue hms miniUI plotly purrr RColorBrewer rlang scales shiny stringr viridis]; }; processmonitR = derive2 { name="processmonitR"; version="0.1.0"; sha256="1ckr438yifpsh095j6bb65dq3rdm7cfm8k7qsjmcqwjkww4j74z8"; depends=[bupaR dplyr edeaR ggplot2 magrittr miniUI shiny]; }; - processx = derive2 { name="processx"; version="3.1.0"; sha256="0wjr3cqwvnjxbvln25szffmkns5w0xysivdjr6chxap4nh515b0i"; depends=[assertthat crayon R6 testthat]; }; + processx = derive2 { name="processx"; version="3.2.0"; sha256="1pzx4ap4xa07gf9zkd6hacdsnb9sp3kb60a7v7ljl0ywrcpn1fn4"; depends=[assertthat crayon ps R6]; }; prodest = derive2 { name="prodest"; version="1.0.1"; sha256="16nqgd9wrjfxymwbxrnlak54cagbv3fxgbql0w5bxnmyrbbqy509"; depends=[AER DEoptim dplyr Matrix Rsolnp]; }; prodigenr = derive2 { name="prodigenr"; version="0.4.0"; sha256="1rbfg3jzspw51lbhjbdy0wy5fgl3k3cnb324i73nbgjn7ycmpfqx"; depends=[clipr clisymbols crayon desc devtools fs git2r rmarkdown rprojroot usethis withr]; }; prodlim = derive2 { name="prodlim"; version="2018.04.18"; sha256="1aslq87sqwikh8chxc378r38146y7kv79zz0kcq3j93ivx7va8jb"; depends=[KernSmooth lava Rcpp survival]; }; productivity = derive2 { name="productivity"; version="1.1.0"; sha256="1g8b4vlyqq3xyzd4dki01glhc3g9j3ywgwpxylkmzp0ivqic53yc"; depends=[doParallel foreach iterators lpSolveAPI]; }; productplots = derive2 { name="productplots"; version="0.1.1"; sha256="1igs6d0qwgsfk0z3vxabgv5kva9w2kpzi535gjfdrbx34j4pf3gx"; depends=[ggplot2 plyr]; }; prof_tree = derive2 { name="prof.tree"; version="0.1.0"; sha256="0mjvxaacrgkzl0f1wn3fpgah4jh720safni66ri0dnriwcxis6rz"; depends=[data_tree]; }; + profExtrema = derive2 { name="profExtrema"; version="0.2.0"; sha256="13fn32v4jryyw2sc6g76fmf2ivbwql0z39wqpl6ggmiwnj95sfm7"; depends=[DiceKriging KrigInv lhs MASS microbenchmark pGPx quantreg rcdd RColorBrewer]; }; profdpm = derive2 { name="profdpm"; version="3.3"; sha256="07lhjavrx4fa5950w928mfpddmmnmvdapl5n6mv49m8h3bxs4nmy"; depends=[]; }; profile = derive2 { name="profile"; version="1.0"; sha256="0m7fm490gqkbmnbdq3lac87zqb9qyx6546rlpa130rq1jnlgxfp6"; depends=[rlang tibble withr]; }; profileModel = derive2 { name="profileModel"; version="0.5-9"; sha256="1p9b9jr5842im195d60ja82pp7vbk85vs8b0r3fnf62j4b92aky9"; depends=[]; }; @@ -9936,10 +10364,10 @@ in with self; { prognosticROC = derive2 { name="prognosticROC"; version="0.7"; sha256="0lscsyll41hpfzihdavygdzqw9xxjp48dmy4i17qsx5h01jl1h4i"; depends=[survival]; }; progress = derive2 { name="progress"; version="1.2.0"; sha256="1rhwm0bdw30z3rvl0bn56xprjl3zrdy7150w4gl4bkvn2d6h9fav"; depends=[crayon hms prettyunits R6]; }; proj4 = derive2 { name="proj4"; version="1.0-8"; sha256="06r3lavgixrsa52d1v31laqcbw6fb9xn23akv39hvaib78diglv9"; depends=[]; }; - projections = derive2 { name="projections"; version="0.3.0"; sha256="1zhyylbp10g2syfj8mybr5cas68wf4h4fk3s7cca4iiihnglcfwz"; depends=[distcrete ggplot2 incidence]; }; + projections = derive2 { name="projections"; version="0.3.1"; sha256="12vskql6x04jzik72a0vx83amfj01w9f7mxn052vsv7aaljbi124"; depends=[distcrete ggplot2 incidence]; }; projector = derive2 { name="projector"; version="0.0.2"; sha256="15n5b2xgs0zj87pc3svlmnkjrxgkjkx941g8bs3ms90fg7nh2drc"; depends=[assertthat dbscan plotly RColorBrewer RcppAnnoy Rtsne shiny shinyjs shinythemes]; }; - projmanr = derive2 { name="projmanr"; version="0.1.1"; sha256="0mmfmp5qf4r75q4hjbra2pxym77m16g28n94z5yj2qdzq46hgl4c"; depends=[ggplot2 igraph R6 tidyr]; }; - projpred = derive2 { name="projpred"; version="0.8.0"; sha256="06wi8lc88xm45drqhb3mcq5l1g1zm2msgi1m0857vldg6828gjbq"; depends=[ggplot2 loo Rcpp RcppArmadillo rngtools rstan rstanarm]; }; + projmanr = derive2 { name="projmanr"; version="0.2.1"; sha256="0pj2a79xnhkwik7lq1gm9jv30pkjgv057yd9nlmb58mf2097i7an"; depends=[ggplot2 igraph mc2d R6 Rcpp tidyr]; }; + projpred = derive2 { name="projpred"; version="1.1.0"; sha256="03lfzlhrch7l87vmpfvyiggq12bzj45kkqp0dy307jnrvfzx9lb1"; depends=[ggplot2 loo Rcpp RcppArmadillo rngtools]; }; promises = derive2 { name="promises"; version="1.0.1"; sha256="0n2mlv6bvfb4yhgcml696l9vkbw21pz0smqylivr606z99rwgny2"; depends=[later magrittr R6 Rcpp rlang]; }; promote = derive2 { name="promote"; version="1.0.2"; sha256="0nxbwy6ls7bn0dqxa87a2gc74yvpyvsvn03q4v0sy3jmdyca0c73"; depends=[httr jsonlite stringr]; }; prop_comb_RR = derive2 { name="prop.comb.RR"; version="1.2"; sha256="10s52fkq7rv6v4gw1yd46f0fbg89ksim0qhgb5jbglzrqh585ny5"; depends=[rootSolve]; }; @@ -9948,7 +10376,7 @@ in with self; { properties = derive2 { name="properties"; version="0.0-9"; sha256="1zd66cg31yd53rqsc0cwxhlpfn7kvc67qdh3vyj9qib8kwxaw1zl"; depends=[]; }; prophet = derive2 { name="prophet"; version="0.3.0.1"; sha256="0ays7qn8vsa8kwzh5fk0b7nbd0l72yczjbg9h0ajkyywz3jda3fv"; depends=[dplyr dygraphs extraDistr ggplot2 Rcpp rstan scales tidyr xts]; }; proportion = derive2 { name="proportion"; version="2.0.0"; sha256="0a71f6hz6blb7550m9x0di84vp51yjhnn952301rwlrh3axf6dbr"; depends=[ggplot2 TeachingDemos]; }; - propr = derive2 { name="propr"; version="3.5.1"; sha256="0wja6snr1hd1ms3wzg6scvs30zip5kbq0jx2j31dxrmy6fwd4h2j"; depends=[fastcluster ggplot2 igraph Rcpp]; }; + propr = derive2 { name="propr"; version="4.0.0"; sha256="1bqprryww8qhivklla2jv0ygy49321racs2msmw4g5y6gpi29593"; depends=[fastcluster ggplot2 igraph Rcpp]; }; prospectr = derive2 { name="prospectr"; version="0.1.3"; sha256="18lh03xg6bgzsdsl56bjd63xdp16sqgr3s326sgifkkak8ffbv7q"; depends=[foreach iterators Rcpp RcppArmadillo]; }; protViz = derive2 { name="protViz"; version="0.3.1"; sha256="1im3ajimycsc1zpzbihxlsibjk0462q0vldy7v5ypsqnjbi1ndxm"; depends=[Rcpp]; }; proteomicdesign = derive2 { name="proteomicdesign"; version="2.0"; sha256="01s47pgwxy4xx10f3qmbfv59gbaj0qw017kpkpsn33s8w7ad63r0"; depends=[MASS]; }; @@ -9960,35 +10388,38 @@ in with self; { protolite = derive2 { name="protolite"; version="1.8"; sha256="05w5lgf255agj70qdyjm64ci9j0pncz0k0bxhq2cxjbkv09169lr"; depends=[jsonlite Rcpp]; }; proton = derive2 { name="proton"; version="1.0"; sha256="1mgaw54is8l6ac1rf8s70rj7kv9xgsfdrlvjz01ggfwg7c6pyr3s"; depends=[digest]; }; prototest = derive2 { name="prototest"; version="1.1"; sha256="0v65abrn73wgwnrrf6gv9f7p0qy12xlk9ishq9lq4qal1wlsrrjs"; depends=[glmnet intervals MASS Rcpp RcppArmadillo]; }; - protr = derive2 { name="protr"; version="1.5-0"; sha256="1mi14hph6cqdsgjw4p00miaa4bh2axkwfcmxaiv7f7v4dk8i52y1"; depends=[]; }; + protr = derive2 { name="protr"; version="1.5-1"; sha256="1hy10pd7lycnagjfbb8a6csprb1x0b30g5d0mwpp5jz2d1nadpgh"; depends=[]; }; proustr = derive2 { name="proustr"; version="0.2.1"; sha256="17syaxfrwm9kh5q825hj7bsrvi4h9avpdabw9y0vq20y87w8cq1s"; depends=[assertthat dplyr magrittr purrr rlang SnowballC stringr tidyr tokenizers]; }; - provenance = derive2 { name="provenance"; version="2.0"; sha256="1775dxxk506nwaigyjsvprf4fibmiamwp7p7cl01g3mbr4gyrm0z"; depends=[IsoplotR MASS]; }; + provenance = derive2 { name="provenance"; version="2.2"; sha256="1g70s5pwgb3cvw4vgxxqp4gi5qi3d02ldq09n4kildms4shxgsmn"; depends=[IsoplotR MASS]; }; proxy = derive2 { name="proxy"; version="0.4-22"; sha256="0l0ff8irmmvic941is290hd5vszyhaj5nfwna4v3w9c1zk5nr1ma"; depends=[]; }; - prozor = derive2 { name="prozor"; version="0.2.3"; sha256="1686lfmzmzl1488xnppv95hfr83gf67xfzqsw49gdas0aba3plhh"; depends=[AhoCorasickTrie doParallel foreach Matrix plyr seqinr stringr]; }; + prozor = derive2 { name="prozor"; version="0.2.11"; sha256="1a2k69fvgi6vxgczk81kh8r2jxc6nirc51w6ac239rqjzb1zyhjm"; depends=[AhoCorasickTrie doParallel dplyr foreach Matrix plyr readr seqinr stringr]; }; prrd = derive2 { name="prrd"; version="0.0.2"; sha256="0ifs55yqvwbcs3xyc90yi763fgavdhajk1ba73g1kchn2ak39qhb"; depends=[config crayon data_table DBI liteq RSQLite]; }; pryr = derive2 { name="pryr"; version="0.1.4"; sha256="06vj5xl9x37kbd3l5bw7sbgfdnp37spvrjrn976rxi04clqk966k"; depends=[codetools Rcpp stringr]; }; + ps = derive2 { name="ps"; version="1.2.0"; sha256="0ai8igdkysmks1ihbp3h3s552da2hskxqwrvp4cx7vwn91x9f3wd"; depends=[]; }; psData = derive2 { name="psData"; version="0.2.2"; sha256="013hb6lk9rm2w08m5jbw90ndrcd4wyy2h125jx07c9bs60wh4mp4"; depends=[countrycode DataCombine reshape2 rio xlsx]; }; psbcGroup = derive2 { name="psbcGroup"; version="1.4"; sha256="0l1hmgw4sislryws8hv7r2nglhcs6g9khg0372a70djvhz2l6gfi"; depends=[LearnBayes mvtnorm SuppDists]; }; pscl = derive2 { name="pscl"; version="1.5.2"; sha256="1phf3awsfr4ncqfqzin5m1pz0g7y1zhbcm2sz7358ssw914fd7rc"; depends=[MASS]; }; pscore = derive2 { name="pscore"; version="0.1-2"; sha256="1sfkxs2kv8lq87j3q9ci7j38c7gzfkp2l36lwcdhiidr2nls2x0c"; depends=[ggplot2 lavaan reshape2]; }; psd = derive2 { name="psd"; version="1.0-1"; sha256="1ssda4g98m0bk6gkrb7c6ylfsd2a84fq4yhp472n4k8wd73mkdn6"; depends=[RColorBrewer Rcpp RcppArmadillo signal zoo]; }; - psda = derive2 { name="psda"; version="1.0.0"; sha256="0zsvm6rqcxv186xbi8nqd4ak93lhrm1hp7339cks140vdp8yl7ys"; depends=[ggplot2 plyr raster rgeos sp]; }; + psda = derive2 { name="psda"; version="1.0.1"; sha256="0hqagrylfllc7mxbnsgxvc2qb3av1wh6ck7y0bs331s4paz0b2mc"; depends=[ggplot2 plyr raster rgeos sp]; }; pse = derive2 { name="pse"; version="0.4.7"; sha256="0kigfzsvx3gw7jwym4f19dydwwarwxgmha7hpy54gg0zzi4k9icl"; depends=[boot Hmisc]; }; pseudo = derive2 { name="pseudo"; version="1.4.3"; sha256="0ccf3gz2g7g5y4acpj2qnb39hrghhdganizlddg6rx7al869fffs"; depends=[geepack KMsurv]; }; - pseudorank = derive2 { name="pseudorank"; version="0.2.0"; sha256="17zr5q76l0y57n7am3c6zg3cwrhcvv2l8q561jcasacp16yg4gy3"; depends=[doBy Rcpp]; }; + pseudorank = derive2 { name="pseudorank"; version="0.3.7"; sha256="1wrf91z75yw88wy1b42z05z7lnykvnfkf8mi9li8108m4k9b13rk"; depends=[doBy Rcpp]; }; pseval = derive2 { name="pseval"; version="1.3.0"; sha256="1iv3fa7ar9i7v9j5axbasmn8l8nvry4zvmb7fd8aql82f22szmbj"; depends=[survival]; }; psgp = derive2 { name="psgp"; version="0.3-18"; sha256="1jfkqwqnmzj3m1d9gxbp2rjkbqb0di75gh78zg861by5qhhaz1a7"; depends=[automap doParallel foreach gstat intamap Rcpp RcppArmadillo rgdal sp]; }; - psidR = derive2 { name="psidR"; version="1.5"; sha256="02cyy1dqgg6mcqyvb0py674lyhhk3h0zi9p02yqacbr81swsjpam"; depends=[data_table foreign httr openxlsx RCurl SAScii XML]; }; + psidR = derive2 { name="psidR"; version="1.9"; sha256="0ljfjxsj6krxyk3ss1n0ccymca4hiwkp9fdb1h1l4rqm0dsj8jj8"; depends=[data_table foreign futile_logger openxlsx RCurl SAScii]; }; pso = derive2 { name="pso"; version="1.0.3"; sha256="0alar695c6kc1rsvwipsrvlxc93f3sy9l0yhp0mggyqgxkkvy406"; depends=[]; }; psoptim = derive2 { name="psoptim"; version="1.0"; sha256="1yziabkd3h05cfl5jy5l8ji2y3w21acvxsq3inxyh0iwyr8qdkkl"; depends=[]; }; pspearman = derive2 { name="pspearman"; version="0.3-0"; sha256="1l5mqga7b5nvm6v9gbl1xsspdqsjqyhhdn4gc4qlz6ld7fqfq6cx"; depends=[]; }; pspline = derive2 { name="pspline"; version="1.0-18"; sha256="1iwsw52miil1v1yl99mzl28qi8gdjr56rlasmh8faqjlpn9z477p"; depends=[]; }; pssm = derive2 { name="pssm"; version="1.1"; sha256="0r3d1mzc7bcz238lqq4y518400m2dqm5a1fb9gkfiari1ax099lv"; depends=[abind MASS MHadaptive numDeriv]; }; + pssmooth = derive2 { name="pssmooth"; version="1.0.1"; sha256="0g43fkls36lsv3z79326x6g1d370dym8879700lq29wl5fslp3an"; depends=[chngpt MASS np osDesign]; }; pstest = derive2 { name="pstest"; version="0.1.1"; sha256="0k8413ilpbz23v210wz80mli7ajpc8p7y4pbn1za371qw04b81c5"; depends=[harvestr]; }; psy = derive2 { name="psy"; version="1.1"; sha256="027whr670w65pf8f7x0vfk9wmadl6nn2idyi6z971069lf01wdlk"; depends=[]; }; psych = derive2 { name="psych"; version="1.8.4"; sha256="1kzv9nc7rwn1sj1zxd8xrbs6c7qlka7j2c8lsr4f20znkd3qx8gf"; depends=[foreign lattice mnormt nlme]; }; - psychmeta = derive2 { name="psychmeta"; version="2.1.1"; sha256="0sjsmzncbzqrhcmv221jliqvfhdd70ysrxax9dprsl8kyyvifvrl"; depends=[boot cli crayon data_table dplyr fungible ggplot2 knitr MASS metafor nor1mix progress purrr RCurl RefManageR reshape2 rlang rmarkdown stringi stringr tibble tidyr tmvtnorm xml2]; }; - psycho = derive2 { name="psycho"; version="0.2.8"; sha256="0739y1svarfw6v4jrf3q6n0vnb6wfij9dnmvzvn87wg8rsp0bvrl"; depends=[BayesFactor broom coda DescTools dplyr emmeans ggcorrplot ggplot2 lavaan lmerTest loo MASS MuMIn nFactors pbkrtest ppcor psych purrr qgraph rstanarm rstantools scales stringr tibble tidyr]; }; + psychReport = derive2 { name="psychReport"; version="0.2"; sha256="1pmxknfvrkwfsa1xw1a6nv9ms0ivrpm7pzzr7az8blj5hnpqm8d5"; depends=[cli crayon dplyr ez reshape2 testthat xtable]; }; + psychmeta = derive2 { name="psychmeta"; version="2.2.1"; sha256="0x5yxzd78xfz9sbbzx4yxa1vbgwj70fiiiypkk0bai5wjhx40c8v"; depends=[boot cli crayon data_table dplyr ggplot2 knitr MASS metafor nor1mix progress purrr RCurl RefManageR reshape2 rlang rmarkdown stringi stringr tibble tidyr tmvtnorm xml2]; }; + psycho = derive2 { name="psycho"; version="0.3.7"; sha256="0n9cj841mjf661cik6xyd7hhhw1dm0yshhg8fh3iq15gn88bgmqi"; depends=[BayesFactor broom coda DescTools dplyr emmeans ggcorrplot ggplot2 lavaan lme4 lmerTest loo MASS MuMIn nFactors ppcor psych purrr qgraph rstanarm rstantools scales stringr tibble tidyr]; }; psychometric = derive2 { name="psychometric"; version="2.2"; sha256="1b7cx6icixh8k3bv60fqxjjks23qn09vlcimqfv2x3m3nkf8p1s9"; depends=[multilevel nlme]; }; psychomix = derive2 { name="psychomix"; version="1.1-4"; sha256="15yk3z11w4bzk6vljr13bkfhzycypww6blc1djb5iwl635xq1c49"; depends=[flexmix Formula lattice modeltools psychotools]; }; psychotools = derive2 { name="psychotools"; version="0.4-3"; sha256="023cfh9ks8cdk458g4yvjhdy8g9vkcabgpj24bcs46r8nga3adjv"; depends=[]; }; @@ -10001,10 +10432,11 @@ in with self; { ptw = derive2 { name="ptw"; version="1.9-13"; sha256="0iighsx6xn8nbw4qpzmwgi4czmr5m8yrr7fzm7mx7cvx2r5ffmbq"; depends=[nloptr]; }; ptwikiwords = derive2 { name="ptwikiwords"; version="0.0.3"; sha256="129dad1vy52sf97dqrkwa49vjhv2kvs4pmd5zvq8pxd51hqm6wy9"; depends=[]; }; ptycho = derive2 { name="ptycho"; version="1.1-4"; sha256="1llk3rpk0lf80vwvs23d6dqhgyic3a6sfjc393csj69hh01nrdvc"; depends=[coda plyr reshape2]; }; - pubh = derive2 { name="pubh"; version="0.2.2"; sha256="13byp5xha102h9y8dhka4fz9gdan4gshcy6bvkgvkj106h7zhy4q"; depends=[bookdown car descr effects Epi epiR epitools gee lattice latticeExtra lme4 lmtest MASS multcomp nlme nnet ordinal pander papeR rmdformats sandwich survival]; }; - pubmed_mineR = derive2 { name="pubmed.mineR"; version="1.0.12"; sha256="04zb5lbjdrhdpam4xmkcc947icsnias5pxbv2pwhvyhk7mz16nya"; depends=[boot R2HTML RCurl XML]; }; + pubchunks = derive2 { name="pubchunks"; version="0.1.0"; sha256="1mi5vzm80fm0vbh9kmmsh7kmgc915i1f1yi2kyw2d3mg98jld9xj"; depends=[data_table xml2]; }; + pubh = derive2 { name="pubh"; version="0.4.2"; sha256="1g5w600iwpazdm445xn8b22gdr0fx9pyjsignlhrvw65dw7pgykh"; depends=[bookdown car desctable effects Epi epiR epitools knitr latex2exp lattice latticeExtra lme4 lmtest MASS multcomp nlme nnet ordinal pander papeR sandwich survival tactile]; }; + pubmed_mineR = derive2 { name="pubmed.mineR"; version="1.0.13"; sha256="17pb5y5savh9iga3i7pyp32j41jwfac0vl538gln3n371x5fjh2r"; depends=[boot R2HTML RCurl XML]; }; pullword = derive2 { name="pullword"; version="0.2"; sha256="14rln0nbd4k2cvf18iwvc56776b9g3m3cs67i7fgzabfrgj8y6db"; depends=[RCurl]; }; - pulsar = derive2 { name="pulsar"; version="0.3.3"; sha256="1lhc9cvxkxvjcl2hi2kivwqp4gddq32kysy1rhpi34i9w0y3gav6"; depends=[Matrix]; }; + pulsar = derive2 { name="pulsar"; version="0.3.4"; sha256="076bakisgw2sv4mv9a21ky97zdz7wr733xylpdczmyyhhqi0n8yp"; depends=[Matrix]; }; pumilioR = derive2 { name="pumilioR"; version="1.3.1"; sha256="1791r5lkr6hafd2rz9f9nfy5vc03c4833f292khvd2cg43sb0bfc"; depends=[RCurl XML]; }; puniform = derive2 { name="puniform"; version="0.1.0"; sha256="16s5qk17wnag7fqgslxpayaq6nczaj2izgdkrkcssgjxfwnanzgm"; depends=[ADGofTest metafor Rcpp]; }; purge = derive2 { name="purge"; version="0.2.1"; sha256="1faf8mkaxsnj63wnig5rs50hd3j6vzaj0xkdz8kn0j7y2vvshp9p"; depends=[]; }; @@ -10015,11 +10447,10 @@ in with self; { pvclass = derive2 { name="pvclass"; version="1.4"; sha256="1g6x75qz3xybq1xnik0hzi7mcs0gzzqd3f0iwfkzi5d1zcddnw13"; depends=[Matrix]; }; pvclust = derive2 { name="pvclust"; version="2.0-0"; sha256="0hfpf257k5f1w59m0zq6sk0gaamflc3ldkw6qzbpyc4j94hiaihs"; depends=[]; }; pvsR = derive2 { name="pvsR"; version="0.3"; sha256="1ijmqlcsc8z0aphdd3j37ci8yqsy50wnr2fwn7h8fxbyd12ax2nj"; depends=[httr nnet XML]; }; - pweight = derive2 { name="pweight"; version="0.0.1"; sha256="0pxxfrap1bmnhbfbmkddfbqwkpw42hq37s0y26zmkxqlx4wblira"; depends=[qqman]; }; pwr = derive2 { name="pwr"; version="1.2-2"; sha256="0r5g781lr677vp3zyhgmi7r68c87l8gd05l1s3ffnxgn5wf043sm"; depends=[]; }; pwr2 = derive2 { name="pwr2"; version="1.0"; sha256="0zfv7z5yymw310r1sqm8ivsc2pv6dgk2k4b1axmm92gsaj53cn7p"; depends=[]; }; pwrAB = derive2 { name="pwrAB"; version="0.1.0"; sha256="0ifyw40m9gsijw3vm9qb8qk4yydmdixfdpdp45x2hk93j8v61jm1"; depends=[]; }; - pwrFDR = derive2 { name="pwrFDR"; version="1.90"; sha256="1lphq62k33wd1ay18gyl62yg6d57j2hhyk1pxz67qv5ywj73r34s"; depends=[]; }; + pwrFDR = derive2 { name="pwrFDR"; version="1.95"; sha256="0xphr4zrn7cav66kw6g52nhc8vvxacvmflvzy32gqy5l7jc89f4q"; depends=[]; }; pwrRasch = derive2 { name="pwrRasch"; version="0.1-2"; sha256="13fr4yfk8aky1vv36pllx673l4lg9q7i661vbyn2zabyizd2rw3b"; depends=[]; }; pwt = derive2 { name="pwt"; version="7.1-1"; sha256="0926viwmwldmzlzbnjfijh00wrhgb0h4h0mlrls71pi5pjfldifa"; depends=[]; }; pwt8 = derive2 { name="pwt8"; version="8.1-1"; sha256="1iig0x90ilzh3hdki0h33qgrra8r94rw4bk1x8y7i6c1may8y0v6"; depends=[]; }; @@ -10029,8 +10460,10 @@ in with self; { pycno = derive2 { name="pycno"; version="1.2"; sha256="0ha5css95xb98dq6qk98gnp1al32gy6w5fkz74255vs4hmkwfzw2"; depends=[maptools rgeos sp]; }; pyinit = derive2 { name="pyinit"; version="1.0.2"; sha256="148b8l5a8c636rgm8dwd8v6ggw9qmkafc5a40bciqc4rk09lfhl3"; depends=[robustbase]; }; pyramid = derive2 { name="pyramid"; version="1.4"; sha256="0hh0hmckicl0r2r9zlf693j65jr9jgmiz643j2asp57nbs99lgxz"; depends=[]; }; + pysd2r = derive2 { name="pysd2r"; version="0.1.0"; sha256="1dqvgdxj6m683wkjyjhv685xnhl9328bm921zphm1i9p70fahs0n"; depends=[knitr reticulate tibble]; }; + pzfx = derive2 { name="pzfx"; version="0.1.0"; sha256="1j4jrkn1qh6902xz0zmyj1y2nzpy2cbvv8qryb9gxm5jpk6zy97i"; depends=[xml2]; }; qCBA = derive2 { name="qCBA"; version="0.3.1"; sha256="0lr97hig9c4l9k7vjalvgar4f1dic1lqf91li4q63j07lgdyvh4c"; depends=[arc arules rJava]; }; - qGaussian = derive2 { name="qGaussian"; version="0.1.6"; sha256="0j8n4y4yzidkp52db73zv2snx0kwpg3aiz7vr82ybq3x9scy8c4n"; depends=[Rcpp robustbase zipfR]; }; + qGaussian = derive2 { name="qGaussian"; version="0.1.8"; sha256="02xy35xg4swr1ldnsbywnz2h0ga1pbsivnj0aqmpll7kvwl9qz4c"; depends=[Rcpp robustbase zipfR]; }; qLearn = derive2 { name="qLearn"; version="1.0"; sha256="1ilxmgazm8gjz8c1hhbp4fccibnvnalxrag8b0rn081zsqmhf094"; depends=[]; }; qPCR_CT = derive2 { name="qPCR.CT"; version="1.1"; sha256="19j41fsd2m7p2nxi2h2mj43rjxx6sz2jpf4sk0bfvl1gyj0iz3hi"; depends=[RColorBrewer]; }; qVarSel = derive2 { name="qVarSel"; version="1.0"; sha256="13x2hnqjsm0ifzmqkkl9ilhykrh80q04lhlkkp06hkysmh5w9rkx"; depends=[lpSolveAPI Rcpp]; }; @@ -10052,19 +10485,20 @@ in with self; { qgtools = derive2 { name="qgtools"; version="1.0"; sha256="0irqfaj2qqx7n1jfc0kmfpgzqrhwwlj0qizsmya94zk9d27bcpn5"; depends=[MASS Matrix]; }; qha = derive2 { name="qha"; version="0.0.8"; sha256="0sdf6g6884wn73i237xkwszg2mq8xddhvyy225qzpplh5za4pnhl"; depends=[ade4 FactoClass FactoMineR]; }; qicharts = derive2 { name="qicharts"; version="0.5.5"; sha256="0bl1f64b5n8q9jhzh3rqfyh9613qiy9mhcy2xsn16jyrj4hmj0jd"; depends=[ggplot2 lattice latticeExtra scales]; }; - qicharts2 = derive2 { name="qicharts2"; version="0.4.0"; sha256="0dd7jn7g7b85yvq39ykl75jdixk3dpinscsizxqwcfcjyhpvszq6"; depends=[dplyr ggplot2 scales]; }; + qicharts2 = derive2 { name="qicharts2"; version="0.5.1"; sha256="1xix0k62zrw6f29fb5yz97lkms669070i42nfdgz64b77axhqjcl"; depends=[dplyr ggplot2 scales]; }; qiimer = derive2 { name="qiimer"; version="0.9.4"; sha256="0argspi9pin2gjsg0qkl28hj3bw8svfab1cy410zlq76qdnmg7df"; depends=[pheatmap]; }; qiitr = derive2 { name="qiitr"; version="0.1.0"; sha256="1p0mcwgzvbib20l05wrnshkqx99vwr69dgy15dfwp75skyy5l797"; depends=[httr jsonlite purrr rstudioapi]; }; qlcData = derive2 { name="qlcData"; version="0.2.1"; sha256="0n1r7462zmyzkyi7mp3hf7pn7bgw1m1zs9flm3n199kjm8f6yyzy"; depends=[ape data_tree docopt phytools shiny stringi yaml]; }; qlcMatrix = derive2 { name="qlcMatrix"; version="0.9.7"; sha256="0iqkcvvy8rxlk0s83sjq57dd6fadb18p5z31lzy0gnzv1hsy1x8y"; depends=[docopt Matrix slam sparsesvd]; }; qlcVisualize = derive2 { name="qlcVisualize"; version="0.1.0"; sha256="13rc4z7rz7vngrkxq09flhszvcbg6i7drdkdp8kmvgcxf0im6lv0"; depends=[alphahull fields mapdata mapplots maps maptools MASS qlcMatrix raster seriation sp spatstat]; }; - qle = derive2 { name="qle"; version="0.17-1"; sha256="1zsvmnxdfd6avr14z5101i4kmks87yrsn15wiq5sx8gsfbxksjkj"; depends=[digest expm lhs mvtnorm nloptr]; }; + qle = derive2 { name="qle"; version="0.18"; sha256="0b2g5sgx1p94bwc1fivbqy3avgn8f95vy1m1nzv3y67615pa251n"; depends=[digest expm lhs mvtnorm nloptr]; }; qmap = derive2 { name="qmap"; version="1.0-4"; sha256="02xvq1mw83gln7phacbi3vhkvb100crggbldv13mhwq3wjnmg5k2"; depends=[fitdistrplus]; }; qmethod = derive2 { name="qmethod"; version="1.5.4"; sha256="1c64b7jy9llz5dhfnk75yamjva043213gd08dsr27pyjkmbyqms1"; depends=[digest GPArotation knitr psych xtable]; }; qmrparser = derive2 { name="qmrparser"; version="0.1.5"; sha256="0sl9n42j0dx9jqz5vv029ra6dyrg9v7mvdlya8ps3vyd6fjhwh0z"; depends=[]; }; + qoma_smuggler = derive2 { name="qoma.smuggler"; version="0.0.1"; sha256="03p9i0kr6i3adpb9lcszcmdr9p26nfy7f8hw2sbydazglaw4hscr"; depends=[lubridate rhli tibble]; }; qpcR = derive2 { name="qpcR"; version="1.4-1"; sha256="1r01q7jv3w59yx1gc0qw91rq7rvdhqsi8y57sqqkmwyqfw2x2vsv"; depends=[MASS Matrix minpack_lm rgl robustbase]; }; qqman = derive2 { name="qqman"; version="0.1.4"; sha256="1v9s9ag1hfb47py87wb2nad4mbsfx35832hdmrh5kxrb2f11zl1s"; depends=[calibrate]; }; - qqplotr = derive2 { name="qqplotr"; version="0.0.2"; sha256="1cfzs77labxsfqq3flqz40gihyaz4bsi9vhsx6qqgpl6v4iz0a2h"; depends=[dplyr ggplot2 knitr MASS robustbase]; }; + qqplotr = derive2 { name="qqplotr"; version="0.0.3"; sha256="0qijdgma702ryi0q2ii2sa04jpz12i8c7xnh9a9zngi9n630a0f2"; depends=[dplyr ggplot2 knitr MASS purrr rmarkdown robustbase]; }; qqtest = derive2 { name="qqtest"; version="1.1.1"; sha256="08vfpbrgvyhv1w0gqmys9zkhfxh85sk74ig5fn12ma2p87zv7r5l"; depends=[robust]; }; qqvases = derive2 { name="qqvases"; version="1.0.0"; sha256="1fli4v1slmnwcmzmmfw84sa4mx3xzv3im1q0plb8811sbsgmwdvl"; depends=[shiny shinythemes]; }; qrLMM = derive2 { name="qrLMM"; version="1.3"; sha256="1k85d09yvhx3pgmvqrsmhd14hqaah4pdr87vp4kg60dp9w5sydjz"; depends=[ald ghyp matrixcalc mvtnorm psych quantreg]; }; @@ -10074,14 +10508,15 @@ in with self; { qrcmNP = derive2 { name="qrcmNP"; version="0.1.2"; sha256="0psgnz2fdj530wjj14pv5x2889yzphnlsg10lry9i6dvmxd8m47k"; depends=[qrcm survival]; }; qrcode = derive2 { name="qrcode"; version="0.1.1"; sha256="12j0db8vidlgkp0dcjyrw5mhhvazl7v7gpn9wsf2m0qnz1rm4igq"; depends=[R_utils stringr]; }; qrencoder = derive2 { name="qrencoder"; version="0.1.0"; sha256="1lg60lg2fiqdw0m228i8pln2p0kqp9f21qmrx6r6rwxifvwlfhv8"; depends=[base64enc png raster Rcpp]; }; - qrjoint = derive2 { name="qrjoint"; version="1.0-0"; sha256="18jmxb5wv16gy4vf0cgp4x885s53i3z3qmc46bdr4md513mc980w"; depends=[coda kernlab Matrix quantreg]; }; + qrjoint = derive2 { name="qrjoint"; version="2.0-2"; sha256="1b8yxlq56z4xgy2k4da75j7gk3l1n6lcl0pzz7c9mx45296d200q"; depends=[coda kernlab Matrix quantreg]; }; qrmdata = derive2 { name="qrmdata"; version="2016-01-03-1"; sha256="192dcsmvl3xbzlk658cfp2sk5fkgbjhjd4g1mrcs8s63hmzbwdzc"; depends=[xts]; }; qrmix = derive2 { name="qrmix"; version="0.9.0"; sha256="1r695d9bmmngvblh9jj0rnjymdaln9w0jywz51wla0bdssssf845"; depends=[MASS quantreg]; }; qrmtools = derive2 { name="qrmtools"; version="0.0-9"; sha256="0q6hp6j4hcj17i1c1rf180rvjcjmka0zq4r89x2rb5cwrhgps99a"; depends=[lattice Quandl quantmod rugarch xts zoo]; }; qrng = derive2 { name="qrng"; version="0.0-5"; sha256="0ddwbbw5w7y8vns83z4dyh8inl976k2cg55rxbynaks8bdxr38mj"; depends=[]; }; qrnn = derive2 { name="qrnn"; version="2.0.3"; sha256="0lc1gj674ll168dbcb1wh0zxmvjaqfhfxg7p2zfpakq63qns442g"; depends=[]; }; qrsvm = derive2 { name="qrsvm"; version="0.2.1"; sha256="0qpj3c8qwrwr2asvp921av0mbdba1ayz0pdq4a52i1waqng4fgis"; depends=[doParallel foreach kernlab Matrix quadprog]; }; - qsort = derive2 { name="qsort"; version="0.2.1"; sha256="046imyjdbsakhf6i6p63xafb9dx7fcixbdqnkm34wrzzvyjvxh15"; depends=[cowplot ggplot2 gridExtra purrr]; }; + qsort = derive2 { name="qsort"; version="0.2.3"; sha256="1xvp29dijfa2207wyw3z09rmffn61fngfy0f00qjk284n1jnnvrg"; depends=[cowplot ggplot2 gridExtra purrr]; }; + qsub = derive2 { name="qsub"; version="1.0.3"; sha256="1ri9bmvqakp0r26mypi8nfpf9fvxkkp3cans8ara3s7wscygycxr"; depends=[dplyr glue processx purrr random readr ssh stringr tidyr]; }; qtbase = derive2 { name="qtbase"; version="1.0.14"; sha256="1pcgjycq61x9h52sqr6fz83qjnlpbawvpavnn9hyw2b7jlv3nwfd"; depends=[]; }; qte = derive2 { name="qte"; version="1.2.2"; sha256="0h4kffavw2ii765c4bvwg19nlzk1si8sw09iklwmmb6gdm2v5m81"; depends=[BMisc formula_tools ggplot2 Hmisc pbapply quantreg texreg]; }; qtl = derive2 { name="qtl"; version="1.42-8"; sha256="1l528dwvfpdlr05imrrm4rq32axp6hld9nqm6mm43kn5n7z2f5k6"; depends=[]; }; @@ -10094,6 +10529,7 @@ in with self; { qtlnet = derive2 { name="qtlnet"; version="1.4.4"; sha256="1r9r6wp71i36ffcdxiljvh2c8nva868x2dx6bkinbaq8cixww2cx"; depends=[graph igraph pcalg qtl sem]; }; qtpaint = derive2 { name="qtpaint"; version="0.9.1"; sha256="08x7qcxwkaclwv1p4s9a5k95x35hzp69whiihkakjv5blm83m3g9"; depends=[qtbase]; }; quad = derive2 { name="quad"; version="1.0"; sha256="0fak12l19f260k0ygh6zimx8dabzsv7a9i2njw8hnfcs3ndffhv5"; depends=[PearsonDS]; }; + quadmatrix = derive2 { name="quadmatrix"; version="0.1.0"; sha256="0nngrvvbalmrr6g9bq9f5qrllvwfq5p1b9yhs4zb098s3wga8jms"; depends=[geigen matrixcalc]; }; quadmesh = derive2 { name="quadmesh"; version="0.1.0"; sha256="1k1midhszmi843krv9sdwbyhjmffgps0xx9aigkp7yw7mpif07vx"; depends=[dplyr raster]; }; quadprog = derive2 { name="quadprog"; version="1.5-5"; sha256="0jg3r6abmhp8r9vkbhpx9ldjfw6vyl1m4c5vwlyjhk1mi03656fr"; depends=[]; }; quadprogXT = derive2 { name="quadprogXT"; version="0.0.3"; sha256="1pa494xpmxanbqcpylhhhm4bnsd1vkrixnmi2rg2bdw21x77hlmb"; depends=[quadprog]; }; @@ -10101,34 +10537,35 @@ in with self; { qualCI = derive2 { name="qualCI"; version="0.1"; sha256="09mzsy5ryyrn1gz9ahrh95cpfk7g09pmjjy0m82fh4xc7j5w6kpf"; depends=[combinat]; }; qualV = derive2 { name="qualV"; version="0.3-3"; sha256="1yyqk223ydcc0125gsn33a4mcdp8bd76fpn8kj9bfz9g78b8dqmx"; depends=[KernSmooth]; }; qualityTools = derive2 { name="qualityTools"; version="1.55"; sha256="1c2p78dhwqvzb2k01dvwb41a6hlr2iwpw6fv91036x30rphjzb88"; depends=[MASS Rsolnp]; }; + qualmap = derive2 { name="qualmap"; version="0.1.1"; sha256="1z085zyqxnizpx4y1891shhijs2a9gg5ap800ryvfxncg6gk35wa"; depends=[dplyr glue leaflet purrr rlang sf]; }; qualpalr = derive2 { name="qualpalr"; version="0.4.2"; sha256="0lgg8r7w2fwd2nw8x3k876pyc9r3igqri57akc5fwi92gb8grj5b"; depends=[assertthat randtoolbox Rcpp RcppArmadillo RcppParallel]; }; - qualtRics = derive2 { name="qualtRics"; version="3.0"; sha256="1cd49jvk04gx278v74yc93f4jni7k30v0anz95mz98x4y3xr45nd"; depends=[assertthat dplyr httr jsonlite readr rlang sjlabelled stringr yaml]; }; qualvar = derive2 { name="qualvar"; version="0.2.0"; sha256="1c7b7lcyq2l46sslk185r6xfh5fb35z9qihrhnh294sw1k52bffa"; depends=[]; }; quantable = derive2 { name="quantable"; version="0.3.6"; sha256="15q4phc2j7aihl8f4qzpdwxcvshq2cfzkfcxc8k4qypsxk9a00sb"; depends=[caret dplyr e1071 ggplot2 ggrepel gplots Matrix plyr pROC RColorBrewer readr reshape2 rlang scales stringr tibble tidyr]; }; - quanteda = derive2 { name="quanteda"; version="1.3.0"; sha256="140xs8581l29p4zn26d9ijzpzcqpgf91l279vbagbpbsj3z8zqky"; depends=[data_table extrafont fastmatch ggplot2 ggrepel lubridate magrittr Matrix network Rcpp RcppArmadillo RcppParallel RSpectra sna SnowballC spacyr stopwords stringi xml2 yaml]; }; + quanteda = derive2 { name="quanteda"; version="1.3.4"; sha256="1m6qhkhdqrd3lvnxpy66klmi7bbkjgjfjp7y1m9cbjws27fgnspi"; depends=[data_table extrafont fastmatch ggplot2 ggrepel lubridate magrittr Matrix network Rcpp RcppArmadillo RcppParallel RSpectra sna SnowballC spacyr stopwords stringi xml2 yaml]; }; quantification = derive2 { name="quantification"; version="0.2.0"; sha256="116cp88q9cmizxc2a8lsysa1vwyp1y86457fx5qkq5dcm4g721g8"; depends=[car]; }; quantileDA = derive2 { name="quantileDA"; version="1.1"; sha256="0jbklxsy33j7clcw97qq4ijwkrb94v2m11gjcfa38vplfxm9913q"; depends=[]; }; + quantities = derive2 { name="quantities"; version="0.1.1"; sha256="0yi9p0d7k07mfhvl1fhlrzslwmfcj9aaxxj97xdlwvd0kb9qs41j"; depends=[errors Rcpp units]; }; quantmod = derive2 { name="quantmod"; version="0.4-13"; sha256="16aldg96z7amp5mr90nb8127yy04gxsihfr26km5p3cx3j117yv0"; depends=[curl TTR xts zoo]; }; quantoptr = derive2 { name="quantoptr"; version="0.1.3"; sha256="0f9vy9yhya4wpya8n345s6n7a5sb29chdkl5fz6dwa31lp1mvvj3"; depends=[quantreg Rdpack rgenoud stringr]; }; quantreg = derive2 { name="quantreg"; version="5.36"; sha256="023gdzahxp582rpabilpxbl3wyjrgjjnnrhcv9xhrqdfiq5l2yza"; depends=[Matrix MatrixModels SparseM]; }; quantreg_nonpar = derive2 { name="quantreg.nonpar"; version="1.0"; sha256="1f9120awnkwsgdiqg98lg7xs5l4y80930869x6k9q76595r5m92k"; depends=[fda mnormt quantreg Rearrangement]; }; quantregForest = derive2 { name="quantregForest"; version="1.3-7"; sha256="0lk7r02i6zpx9sdl2rp0r7fc3a84s8qhg49nh2x7k3vxwa095pjz"; depends=[randomForest RColorBrewer]; }; - quantregGrowth = derive2 { name="quantregGrowth"; version="0.4-2"; sha256="0g8jlgxivsg788g73ji7vckc6hgncsjkpyc0l8awcpaxi7i3a98l"; depends=[quantreg]; }; + quantregGrowth = derive2 { name="quantregGrowth"; version="0.4-3"; sha256="0q2yk51hcn7jnvh14nxa7szfj4pr9grh5rdfwazaziilbwqdmw4f"; depends=[quantreg]; }; quantregRanger = derive2 { name="quantregRanger"; version="1.0"; sha256="1a9q2prr790bpw6s0y5ni5ppd3vqkjr0v4nqp6ywcj5n3sk69pvx"; depends=[ranger Rcpp]; }; quantspec = derive2 { name="quantspec"; version="1.2-1"; sha256="0kvwifdwy3big0lls5h3wcb48v3jvlfp1l0zjd07jnvj43zj3ysd"; depends=[abind quantreg Rcpp snowfall zoo]; }; quarrint = derive2 { name="quarrint"; version="1.0.0"; sha256="13fdmmrgn23xd9vpywmcl7pf729gmcxjfl1wxs30axsbp4h1s6rk"; depends=[neuralnet]; }; - questionr = derive2 { name="questionr"; version="0.6.2"; sha256="0mjgwm6xm753r6bjlz79c9vp7xxkb69hiv3mlzrm50slh34x7jhx"; depends=[classInt highr htmltools labelled miniUI rstudioapi shiny]; }; - queuecomputer = derive2 { name="queuecomputer"; version="0.8.2"; sha256="0zpyi4hqhsy2jlbf2ygfl25wh3m166ifp9yw4h4ycd1pga9bj43n"; depends=[dplyr Rcpp RcppArmadillo tidyr]; }; + questionr = derive2 { name="questionr"; version="0.6.3"; sha256="1vak9wlhdgdc1vh8g87ha3gjcnx6kpl67wpsxnpvkgxai6qd8fb9"; depends=[classInt highr htmltools labelled miniUI rstudioapi shiny]; }; + queuecomputer = derive2 { name="queuecomputer"; version="0.8.3"; sha256="0ravk2bxzq3zhk6mmh6iv11ql3bkpp2318vvrl39ghm5bh6pp6mg"; depends=[dplyr Rcpp RcppArmadillo tidyr]; }; queueing = derive2 { name="queueing"; version="0.2.11"; sha256="1rgavpivvxwww1qiphbjm25d1avhjcjv31imsrzrkwh1d12b2k7x"; depends=[]; }; quhomology = derive2 { name="quhomology"; version="1.1.1"; sha256="0wiih00zk4682wy1r4nyifh76h5bnvl3f785wjzmrwylnfy951l3"; depends=[MASS numbers]; }; - quickPlot = derive2 { name="quickPlot"; version="0.1.4"; sha256="13g86gdfidkvp70w4gscp81c4vzbhbl7b47a7knw4h7hswsb9a1p"; depends=[data_table fpCompare ggplot2 gridBase igraph raster RColorBrewer rgdal rgeos sp]; }; + quickPlot = derive2 { name="quickPlot"; version="0.1.5"; sha256="0jqfshwb7ykrz5xi0gfp80fs81yv6mfc0vhbgkbzn7kcjfkcydac"; depends=[data_table fpCompare ggplot2 gridBase igraph raster RColorBrewer rgdal rgeos sp]; }; quickReg = derive2 { name="quickReg"; version="1.5.0"; sha256="1l1v3k8albxlaz18l2b2x2ryifq4pbdq6n4q7555hnfcik9rqmw5"; depends=[dplyr ggplot2 nortest psych rlang survival]; }; - quickblock = derive2 { name="quickblock"; version="0.1.0"; sha256="15zv7znhq3rl5jkdy0jyxr0h2mkpxir04vvl2hw57c5mn79izcpr"; depends=[distances scclust]; }; + quickblock = derive2 { name="quickblock"; version="0.2.0"; sha256="0ij4ivpnkjzdixbq7pg4g1xkb031qawadr22qhzp0q210qhmhc0m"; depends=[distances scclust]; }; quickmapr = derive2 { name="quickmapr"; version="0.3.0"; sha256="0962qm8ak0wpqld8nrb8rvvb78743zfrfsq2xrwdlql681j2nv8c"; depends=[httr raster rgdal rgeos sf sp]; }; - quickmatch = derive2 { name="quickmatch"; version="0.1.2"; sha256="03wnx6hifr4pmwm6fsxamcaf5ig59nfia9lyn6mzxplinfid71w6"; depends=[distances sandwich scclust]; }; + quickmatch = derive2 { name="quickmatch"; version="0.2.1"; sha256="1qfslhjlbjpzigz8n6b7w41g8pwdiwri091ivd5igp1xy5pv8a3w"; depends=[distances sandwich scclust]; }; quickpsy = derive2 { name="quickpsy"; version="0.1.5"; sha256="0r1xjcx02p0fsgfcd2h0dxcagzxxan405cjwh8sjdgi5p01jrym8"; depends=[DEoptim dplyr ggplot2 MPDiR]; }; quickregression = derive2 { name="quickregression"; version="0.2"; sha256="1z0sspi8q7dvgxqbj5na56v458pv6jhxrssnm6j23156dchgw39h"; depends=[car]; }; - quint = derive2 { name="quint"; version="1.2.1"; sha256="1d9dnrjnl9cg2yn5snr6x9qr6lf74639j3ymsxpw0wn5c4fm8z46"; depends=[Formula partykit rpart]; }; + quint = derive2 { name="quint"; version="2.0.0"; sha256="10jcpabsk7bdw7cvq21z0hsrp4gnlbf35iypc2gprrbkk8sw4i8i"; depends=[Formula partykit rpart]; }; quokar = derive2 { name="quokar"; version="0.1.0"; sha256="1qnl3x1aa665xpyb3ac07xrnnjdwbmj645p103144k5is5b8likc"; depends=[ald ALDqr bayesQR dplyr ggplot2 GIGrvg gridExtra knitr magrittr MCMCpack purrr quantreg robustbase tidyr]; }; quotedargs = derive2 { name="quotedargs"; version="0.1.2"; sha256="034fhfmfq62yf7akx2i0bim70jq9azkk2h28k79lwax7ysydsjnj"; depends=[]; }; qut = derive2 { name="qut"; version="2.1"; sha256="1wkk4c4f10a1whrspr5yalp7flcxckzxlx187ymmpnz7qcncz619"; depends=[flare glmnet lars Matrix]; }; @@ -10140,7 +10577,9 @@ in with self; { r2dRue = derive2 { name="r2dRue"; version="1.0.4"; sha256="1apdq7zj5fhs349wm9g6y06nn33x24pg3gdp4z1frd18qlacf8z5"; depends=[matrixStats rgdal sp]; }; r2glmm = derive2 { name="r2glmm"; version="0.1.2"; sha256="0iim92blpa59vgz97c2pi05yhbjjmaffdbkbmk5kplfb2vmazgiy"; depends=[afex data_table dplyr ggplot2 gridExtra lmerTest MASS Matrix mgcv pbkrtest]; }; r2stl = derive2 { name="r2stl"; version="1.0.0"; sha256="18lvnxr40cm450s8qh09c3cnkl1hg83jhmv1gzsv6nkjrq4mj5wh"; depends=[]; }; + r4lineups = derive2 { name="r4lineups"; version="0.1.1"; sha256="1p0dnrp21zx1l9lqx01jnq54d5ppb8siibv47i4gsp7c7db9ymxc"; depends=[boot dplyr ggplot2 ggrepel here magick magrittr pROC psych purrr]; }; r4ss = derive2 { name="r4ss"; version="1.24.0"; sha256="1kifzfg2zx6lq2c8qqbhb096z1wgdayhg5qzx5hnkwpn05w5cma3"; depends=[coda corpcor gplots gtools maps pso truncnorm]; }; + r511 = derive2 { name="r511"; version="0.1.1"; sha256="1njsnjf0746cv6x7fznq4cg556fczqcfawwb869r3w9zv0zj1iy9"; depends=[assertthat dplyr httr tibble xml2]; }; r6extended = derive2 { name="r6extended"; version="0.1.1"; sha256="184c3jh84vihbwg81c2wv3ndaddki8cpas3wgvqk2akyq168rnfc"; depends=[digest hellno magrittr R6]; }; rARPACK = derive2 { name="rARPACK"; version="0.11-0"; sha256="12h2y46xcfldhjdmm960swgn9b23zvkj5vg2bi42s9qxwgi02d63"; depends=[RSpectra]; }; rAltmetric = derive2 { name="rAltmetric"; version="0.7.0"; sha256="1vbvjv273vg3pi30vxxa2bivlajfsbqrzflk3payp6ym9myi27mg"; depends=[httr jsonlite rlist]; }; @@ -10166,12 +10605,13 @@ in with self; { rFDSN = derive2 { name="rFDSN"; version="0.0.0"; sha256="1ffiqpdzy4ipy2aci22zkih4373ifkjkpvsrza8awhyf9fwqwdsl"; depends=[XML]; }; rFSA = derive2 { name="rFSA"; version="0.9.1"; sha256="14qpxmzy4vy1fydn8yqh1001mqrgv1i67ai42w61dkk0d4m75z60"; depends=[hashmap tibble]; }; rFTRLProximal = derive2 { name="rFTRLProximal"; version="1.0.0"; sha256="1458gqy2zbaa62vaimawdr1nk0lsgwz1j4pgw21fkw7bskcszz0f"; depends=[data_table FeatureHashing foreach magrittr Matrix Rcpp RcppArmadillo RcppProgress]; }; - rFerns = derive2 { name="rFerns"; version="2.0.3"; sha256="02lq43mgcz8n21hwb0pjqi0aq5dacnaakpx336q1xzw1kwlvfkhv"; depends=[]; }; + rFerns = derive2 { name="rFerns"; version="3.0.0"; sha256="0z12201y1b9d3rd02k4y64hpnlrgkg7pi1jpzsh1br4pchdf7rrm"; depends=[]; }; rGammaGamma = derive2 { name="rGammaGamma"; version="1.0.12"; sha256="1051ah6q11qkxj1my4xybbzc8xcqkxfmps8mv2his5cyfllwidbs"; depends=[gsl]; }; rGoodData = derive2 { name="rGoodData"; version="0.1.1"; sha256="092sgy6y3dkyr32hrir4jvjwh7n6gfvv9z7i631fipg59255g0zy"; depends=[data_table httr jsonlite]; }; rGroovy = derive2 { name="rGroovy"; version="1.3"; sha256="172vm4diygzi4ipmw8bl03k0x3aps0h1vkvwvw539kamy7xb5w98"; depends=[rJava]; }; rHealthDataGov = derive2 { name="rHealthDataGov"; version="1.0.1"; sha256="0lkjprss15yl6n9wgh79r4clip3jndly2ab1lv4iijzxnxay099d"; depends=[bit64 httr jsonlite]; }; rHpcc = derive2 { name="rHpcc"; version="1.0"; sha256="0096z90mmf1j2xpb9034a5ph52m8z6n6xjh3km2vrhw63g3cpwap"; depends=[RCurl XML]; }; + rIP = derive2 { name="rIP"; version="0.1.1"; sha256="0fmn48zfp7pkjza6a4dl7hpm2addijxk9990fw845q0awdd181ax"; depends=[httr]; }; rIsing = derive2 { name="rIsing"; version="0.1.0"; sha256="1208lwfk9j8gghj8xf6i8v6s18h89ydqsd4jq3r88n403yzbzzck"; depends=[data_table Rcpp RcppEigen]; }; rJPSGCS = derive2 { name="rJPSGCS"; version="0.2-10"; sha256="0a00s10yp22fkvk67dkq43sbphcqla65x9j4qpv076bmdchn7arw"; depends=[chopsticks rJava]; }; rJava = derive2 { name="rJava"; version="0.9-10"; sha256="0y7yg70i3zwbwl4g36js4dqpl51cmwss5ymrsk24d1z07bflp4y9"; depends=[]; }; @@ -10180,17 +10620,18 @@ in with self; { rLDCP = derive2 { name="rLDCP"; version="1.0.2"; sha256="0k7zc1xyqmcl7070hhpqw1d2k1ij6bd4wjym8cw263pds2n7nx21"; depends=[XML]; }; rLTP = derive2 { name="rLTP"; version="0.1.4"; sha256="04w432m03xwh0szshsrfw5h7wy43q4lj8z0y07k8w6gsf27cy5bx"; depends=[RCurl]; }; rLakeAnalyzer = derive2 { name="rLakeAnalyzer"; version="1.11.4"; sha256="1fvln3r2zkzhsck53jppchg795qbjbzw0rd688h89if1lkiy51w6"; depends=[plyr]; }; + rLandsat = derive2 { name="rLandsat"; version="0.1.0"; sha256="0j6p0ba76vhzg69frdf4ykiyc8vy0axd4jw26b72j8pl9rdwnn01"; depends=[dplyr httr jsonlite RCurl readr stringr svMisc]; }; rLiDAR = derive2 { name="rLiDAR"; version="0.1.1"; sha256="1w0yi4ygw0l9ydbllqjylp30d401bsf7b6fng6qg3pssbi9v3kln"; depends=[bitops deldir geometry plyr raster rgl sp spatstat]; }; rLindo = derive2 { name="rLindo"; version="8.0.1"; sha256="05qyc4wvpjgw8jxmwn2nwybi695fjn0cdilkprwmjg07c82f0q5n"; depends=[]; }; rMEA = derive2 { name="rMEA"; version="1.0.0"; sha256="1cxcf2ji2f3kkjlj6lym7zfpmgbbjw7al67dldy2kn9dk2dn087z"; depends=[]; }; rMR = derive2 { name="rMR"; version="1.1.0"; sha256="0da1hclfnnlkp9by6zf2p079643p8nimplr9p3ipbjdy739j344z"; depends=[biglm]; }; rMouse = derive2 { name="rMouse"; version="0.1"; sha256="0pzxasap5kwxqq36mb4zi139jllsl4vk06dw2pv9xnwdxiszr3gp"; depends=[rJava]; }; rNMF = derive2 { name="rNMF"; version="0.5.0"; sha256="1nz6h0j5ywdh48m0swmhp34hbkycd7n13rclrxaw85qi9wc42597"; depends=[knitr nnls]; }; - rNOMADS = derive2 { name="rNOMADS"; version="2.3.9"; sha256="15l6150vsaa7y2wv896mhdbakxdsg87fx74bbj0rsn0757jss525"; depends=[fields GEOmap MBA RCurl rvest scrapeR stringr XML xml2]; }; + rNOMADS = derive2 { name="rNOMADS"; version="2.3.10"; sha256="1pbbrx91fq5gpjhf6rqyhl9isj3mz3prbh5g5sfg7y63hhn817z0"; depends=[fields GEOmap MBA RCurl rvest scrapeR stringr uuid XML xml2]; }; rODE = derive2 { name="rODE"; version="0.99.6"; sha256="0l518ghfw6283kckqcbh45a35vd73njy05v3dwghhhjdj7v3km8b"; depends=[data_table]; }; rPackedBar = derive2 { name="rPackedBar"; version="0.1.0"; sha256="12jwkch3264m6ksl8rdjirwdzm1g8b4050mm6rysw9v57k3v57ji"; depends=[data_table plotly scales]; }; rPowerSampleSize = derive2 { name="rPowerSampleSize"; version="1.0.2"; sha256="1insdfvcn1pirsnf7nwfia0kzgsmh2zpghgfj2yc35ld1r9j2hp2"; depends=[mvtnorm ssanv]; }; - rPraat = derive2 { name="rPraat"; version="1.0.8"; sha256="06f97sa43i0b4x8j48higgx5jyj5q73j6mf2730yfm4db6ahz94m"; depends=[dplyr dygraphs readr stringr]; }; + rPraat = derive2 { name="rPraat"; version="1.1.2"; sha256="1fvawmpv3zxd1gjcal69j5biga1mcd956kr52x0azqprhqdk6r52"; depends=[dplyr dygraphs readr stringr]; }; rPref = derive2 { name="rPref"; version="1.2"; sha256="19b6rycz73rz3nxymb52gfddqsxprkxazwa8pb75vckk13q1cmj0"; depends=[dplyr igraph lazyeval Rcpp RcppParallel]; }; rPython = derive2 { name="rPython"; version="0.0-6"; sha256="1aw9jn45mw891cskr51yil60i55xv5x6akjvfdsbb9nwgdwwrqdp"; depends=[RJSONIO]; }; rRAP = derive2 { name="rRAP"; version="1.1"; sha256="1nzvs8bjkbjraa33azxf9mrxsxh87qhh3qlldrcs5y4fq4ancyqb"; depends=[lars lassoshooting MASS]; }; @@ -10201,30 +10642,34 @@ in with self; { rSymPy = derive2 { name="rSymPy"; version="0.2-1.1"; sha256="1mrfpyalrq8b6yicy28jsj0xy7hlawa72imsfhabwd3hrx6ld150"; depends=[rJython]; }; rTableICC = derive2 { name="rTableICC"; version="1.0.7"; sha256="1z896675kmm9p5dnmcnsz2205ynf05laqcxvlc9y0g5i0x8rf8v6"; depends=[aster partitions]; }; rTensor = derive2 { name="rTensor"; version="1.3"; sha256="0ra34sn4g92r6asrn4la2wbsi2y0hnyx163wwi4v0j6f57bslhdw"; depends=[]; }; + rTephra = derive2 { name="rTephra"; version="0.1"; sha256="045f2sp2j4hiwa9k1vs6cxr59x1yr34jq1z2crasxflsxbwa3xz8"; depends=[]; }; rUnemploymentData = derive2 { name="rUnemploymentData"; version="1.1.0"; sha256="0p5hba8iv060szp23s05hvpmwan518ykakm6vqzdcki0inxw0hyv"; depends=[choroplethr rvest stringr]; }; rWBclimate = derive2 { name="rWBclimate"; version="0.1.3"; sha256="0vs56hx7a85pw4jx8nb8bdlr9dbkl4zdhzhqsm0505xc3qz18vxh"; depends=[ggplot2 httr jsonlite plyr reshape2 rgdal sp]; }; - rWind = derive2 { name="rWind"; version="1.0.2"; sha256="0w109l3hibl1w0g2qj2rqm59qfs9zbry5q8azii86mqpgwxk7zln"; depends=[gdistance lubridate Matrix raster]; }; - rWishart = derive2 { name="rWishart"; version="0.1.0"; sha256="1kg2n8lyfdp76fw36m13rlb0qy1ffk8n701ffmf5dgkfp0x8nnn7"; depends=[lazyeval MASS Matrix]; }; + rWind = derive2 { name="rWind"; version="1.0.3"; sha256="04b3yz0x07j2fvq0gzmvl071wwnkhzx4wfr7xpdss2nq8vjwxjaj"; depends=[gdistance lubridate Matrix raster]; }; + rWishart = derive2 { name="rWishart"; version="0.1.1"; sha256="1zv35l2nvwwidx5zxfh7a4jgiaq2mqk69xf974994k1ksfvibkmi"; depends=[lazyeval MASS Matrix]; }; rYoutheria = derive2 { name="rYoutheria"; version="1.0.3"; sha256="1r63ggy4knwzxnpjkmsn7zwmwfaznm8mmxl7r9ph10wz4sblgygl"; depends=[plyr RCurl reshape2 RJSONIO]; }; rabi = derive2 { name="rabi"; version="0.1.0"; sha256="02ldpkqpdvh0b660j34bppw5j9pl3a2b4vkzaaiq4kcangahg2r6"; depends=[numbers polynom stringdist]; }; race = derive2 { name="race"; version="0.1.59"; sha256="13jprlnngribgvyr7fbg9d36i8qf3cax85n71dl71iv0y24al1cy"; depends=[]; }; radar = derive2 { name="radar"; version="1.0.0"; sha256="1wh5j3cfbj01jx2kbm9ca5cqhbb0vw7ifjn426bllm4lbbd8l273"; depends=[]; }; radarchart = derive2 { name="radarchart"; version="0.3.1"; sha256="0gcxnbgj8ja1m4wzhbjy67m6zphf0c5ni9yx7sr7f0abm03ry753"; depends=[htmltools htmlwidgets]; }; - radiant = derive2 { name="radiant"; version="0.9.5"; sha256="0a5dvmvnvn2jd53grvagbxw6lb4mp3l809911dlh2rr4b9z9nkyx"; depends=[AlgDesign psych r_import radiant_basics radiant_data radiant_design radiant_model radiant_multivariate rstudioapi shiny]; }; - radiant_basics = derive2 { name="radiant.basics"; version="0.9.5"; sha256="0xwsgi4nr9i7wi699cgmfdyb7nxf98af4vgl56i1bbnxl8k0bnxz"; depends=[dplyr ggplot2 gridExtra magrittr psych r_import radiant_data rstudioapi scales shiny tidyr]; }; - radiant_data = derive2 { name="radiant.data"; version="0.9.5"; sha256="0mbxfqn79nphii4hb6kxl2wc0w0ra16y378rp2yw9a9926zdb7mb"; depends=[base64enc broom car curl dplyr DT ggplot2 glue gridExtra jsonlite knitr lubridate magrittr markdown plotly psych r_import readr readxl rlang rmarkdown rstudioapi scales shiny shinyAce tibble tidyr writexl]; }; - radiant_design = derive2 { name="radiant.design"; version="0.9.5"; sha256="1lqim49ifw019aqfrz2pqa81yn2kg5hixn3ywd5hfj670n5sd5hr"; depends=[AlgDesign dplyr mvtnorm polycor r_import radiant_data rstudioapi shiny]; }; - radiant_model = derive2 { name="radiant.model"; version="0.9.5"; sha256="1r1gz8hlrihadzz4x73ccrxqkz744lbr8h29fa77ghkiy9y55abq"; depends=[car data_tree DiagrammeR dplyr e1071 ggplot2 gridExtra lubridate magrittr NeuralNetTools nnet psych r_import radiant_basics radiant_data rlang rpart rstudioapi sandwich shiny stringr tidyr yaml]; }; - radiant_multivariate = derive2 { name="radiant.multivariate"; version="0.9.5"; sha256="1rpk757r80l38y0y4w94h363xdmrv7mp6qpnwpcbrza20w9dhqvs"; depends=[car dplyr ggplot2 ggrepel Gmedian GPArotation gridExtra magrittr MASS psych r_import radiant_data radiant_model rlang rstudioapi scales shiny]; }; + radiant = derive2 { name="radiant"; version="0.9.7"; sha256="0vmiypmabimnxdh692x4f2fbv32fmb8rhn5hvf60sk5qzzp0hla3"; depends=[r_import radiant_basics radiant_data radiant_design radiant_model radiant_multivariate shiny]; }; + radiant_basics = derive2 { name="radiant.basics"; version="0.9.7"; sha256="1lyishpzy51yyi5wqcxxyl1vz16i28fkkg9828f5z6ak109y2mn8"; depends=[dplyr ggplot2 gridExtra magrittr psych r_import radiant_data scales shiny tidyr]; }; + radiant_data = derive2 { name="radiant.data"; version="0.9.7"; sha256="1f98ahki0kyb27gl55a859zb0lsvk9gddd9f54y767xfs6h89cgk"; depends=[base64enc broom car curl dplyr DT ggplot2 glue gridExtra jsonlite knitr lubridate magrittr markdown plotly psych r_import readr readxl rlang rmarkdown rstudioapi scales shiny shinyAce shinyFiles summarytools tibble tidyr writexl]; }; + radiant_design = derive2 { name="radiant.design"; version="0.9.7"; sha256="1qfridr70s22agjaiv2522v24pnf4jrk4dad46ghdzzj79s3kqvj"; depends=[AlgDesign dplyr mvtnorm polycor r_import radiant_data shiny]; }; + radiant_model = derive2 { name="radiant.model"; version="0.9.7"; sha256="18xrvgc3f58m26vng4m9ayn49vf7yb3r1p3nwbhszih5m9sfgxx2"; depends=[car data_tree DiagrammeR dplyr e1071 ggplot2 gridExtra lubridate magrittr NeuralNetTools nnet psych r_import radiant_basics radiant_data rlang rpart sandwich shiny stringr tidyr yaml]; }; + radiant_multivariate = derive2 { name="radiant.multivariate"; version="0.9.7"; sha256="1p7857h0p8l828hngb0l4qswjifdisi9ya0yxmn9wry50ids9rgf"; depends=[car dplyr ggplot2 ggrepel Gmedian GPArotation gridExtra magrittr MASS psych r_import radiant_data radiant_model rlang scales shiny]; }; radiomics = derive2 { name="radiomics"; version="0.1.3"; sha256="1ra94yaqw88slznhyv70kbfricxi44m4pnx1zh4ijghm491rphr5"; depends=[Rcpp reshape2 spatstat]; }; radir = derive2 { name="radir"; version="1.0.3"; sha256="0v1w0jy19fqscwkggyjashb6n9r6xjc0d971zw0lqnh1ap3chg0y"; depends=[hermite]; }; + radix = derive2 { name="radix"; version="0.5"; sha256="18sjhkrqsdr03sjpdh0crd83r8rk8q3p2saabasbkkbvprh6b769"; depends=[base64enc digest downloader htmltools jsonlite knitr lubridate mime png progress rmarkdown rprojroot rstudioapi stringr whisker xml2 yaml]; }; + radjust = derive2 { name="radjust"; version="0.1.0"; sha256="0krryhqid16a6jfb007n0k6rc8r7c808h859a9pjid2jbkg0bm7l"; depends=[]; }; radmixture = derive2 { name="radmixture"; version="0.0.1"; sha256="0rs60xjd43lg5c9972qhpg6bsqfg2578qvrz7gz3bdip10jb1ryj"; depends=[magrittr MCMCpack plyr quadprog]; }; + radtools = derive2 { name="radtools"; version="1.0.0"; sha256="0xspd3spfr59nciddx4gmfrw52jr0m0gznqb5rjsarshn9y8x3xf"; depends=[dplyr Hmisc magrittr oro_dicom oro_nifti]; }; rafalib = derive2 { name="rafalib"; version="1.0.0"; sha256="1dmxjl66bfdgrybhwyaa8d4i460liqcdw8b29a6w7shgksh29m0k"; depends=[RColorBrewer]; }; rags2ridges = derive2 { name="rags2ridges"; version="2.2"; sha256="04f9gvwpgrx54dgbjjixlxa2056aqcz2kryn4jplwf5fc0vj1lyn"; depends=[expm fdrtool ggplot2 graph gRbase Hmisc igraph RBGL Rcpp RcppArmadillo reshape sfsmisc snowfall]; }; ragt2ridges = derive2 { name="ragt2ridges"; version="0.3.1"; sha256="0zjqrvy1k1lz4caakcj3c6l2j637wp6nxbzfj0gvcn2c4pjcrdyp"; depends=[abind expm fdrtool igraph MASS Matrix mvtnorm rags2ridges Rcpp RcppArmadillo]; }; ragtop = derive2 { name="ragtop"; version="0.5"; sha256="0h09h9ws9c2d9xc00w4hl000h0kbvq16lz4vgv1w93am8zmsp4wm"; depends=[futile_logger limSolve]; }; railtrails = derive2 { name="railtrails"; version="0.1.1"; sha256="1hi55rcxmr7k3na3rpjqmd5fpgn51bymrp7yxmw45ff7mlzpa5h6"; depends=[tibble]; }; - rainbow = derive2 { name="rainbow"; version="3.4"; sha256="09vxdb4j099grnlx10995b74r3h9g1vs8div3nywgnslaj8x7pay"; depends=[cluster colorspace hdrcde ks MASS pcaPP]; }; + rainbow = derive2 { name="rainbow"; version="3.5"; sha256="1gcaflb3haw9wpx4wl64vgi30jxn2nrzlm5125hhg647rw7ryp8k"; depends=[cluster colorspace hdrcde ks MASS pcaPP]; }; raincpc = derive2 { name="raincpc"; version="0.4"; sha256="0yzpyidvf24frf82pj7rarjh0ncm5dhm0mmpsf2ycqlvp0qld10i"; depends=[SDMTools]; }; rainfreq = derive2 { name="rainfreq"; version="0.3"; sha256="0985ck2bglg22gfj7m0hc7kpk0apljsbssf1ci99mgk47yi8fk9v"; depends=[RCurl SDMTools]; }; rakeR = derive2 { name="rakeR"; version="0.2.1"; sha256="0cd89q6k0y9z1qk9k06iw56lhj4c52ckr0g4qv6q95lkyrbi3qg8"; depends=[ipfp wrswoR]; }; @@ -10241,7 +10686,7 @@ in with self; { random_polychor_pa = derive2 { name="random.polychor.pa"; version="1.1.4-2"; sha256="1ybwfn3hdwisxjn85vqrib1zhk8dcddbarbwjdf1vn27ih3c4h2c"; depends=[boot MASS mvtnorm nFactors psych sfsmisc]; }; randomForest = derive2 { name="randomForest"; version="4.6-14"; sha256="0kbmm0l42fc2d1rdq0l7k09d34kd87q4lx651ffsic4y84h8kf7l"; depends=[]; }; randomForestExplainer = derive2 { name="randomForestExplainer"; version="0.9"; sha256="0gqqm3784krl6xdx7j6xvvyi2rjbyi6c8shm44yvq59is5i7fypc"; depends=[data_table dplyr DT dtplyr GGally ggplot2 ggrepel MASS randomForest reshape2 rmarkdown]; }; - randomForestSRC = derive2 { name="randomForestSRC"; version="2.6.1"; sha256="0wmqy1m04iknqzfajhfcb6cjpl9h35x13ihsdx91l1d1yki7yq71"; depends=[]; }; + randomForestSRC = derive2 { name="randomForestSRC"; version="2.7.0"; sha256="12wqjch4mddb9gqcacihcvlrdj697yr2sjr3pmrf7xm3yws2gjrb"; depends=[]; }; randomGLM = derive2 { name="randomGLM"; version="1.02-1"; sha256="031338zxy6vqak8ibl2as0l37pa6qndln0g3i9gi4s6cvbdw3xrv"; depends=[doParallel foreach MASS]; }; randomLCA = derive2 { name="randomLCA"; version="1.0-15"; sha256="10rx2ah50dcjxz5y492c59d3pn0dvlgjaxfdf8sknkf6s4pmwkis"; depends=[boot fastGHQuad lattice Matrix]; }; randomNames = derive2 { name="randomNames"; version="1.0-0.0"; sha256="12q5bs65qivddiaxbsp128j94h2vyrgjvmm80d52r36ffbaigl09"; depends=[data_table]; }; @@ -10250,7 +10695,7 @@ in with self; { randomizationInference = derive2 { name="randomizationInference"; version="1.0.3"; sha256="0x36r9bjmpx90fz47cha4hbas4b31mpnbd8ziw2wld4580jkd6mk"; depends=[matrixStats permute]; }; randomizeBE = derive2 { name="randomizeBE"; version="0.3-4"; sha256="1x1lh1rrw7ma2wls0dflz18lk9h0qdy9gb11af95hqpabqc85rd7"; depends=[]; }; randomizeR = derive2 { name="randomizeR"; version="1.4.2"; sha256="0jv0mc40cy4w17jrsb2023l7k7cnzl9czdigl4shq9nx67mccdwx"; depends=[ggplot2 plotrix]; }; - randomizr = derive2 { name="randomizr"; version="0.16.0"; sha256="0lsba2nzzx8vnkyj8fzf9lfnkq743qdzir9f15pk23xycjzlncfs"; depends=[]; }; + randomizr = derive2 { name="randomizr"; version="0.16.1"; sha256="1jj04wvn7qrqpvag4ri9fqkw9815kyxhlcqn2f1m0bb94d5ngwzq"; depends=[]; }; randomsearch = derive2 { name="randomsearch"; version="0.1.0"; sha256="176grqp6rv4hiyzr9fzx2zz360h5nkrw39gidclgmrp7ckn5qs4v"; depends=[checkmate fs parallelMap ParamHelpers smoof]; }; randquotes = derive2 { name="randquotes"; version="0.1.0"; sha256="1rpcmxkpq8lgfzrjaipf5x573gm6rc31c9fafghiy99c0iphf46w"; depends=[curl jsonlite xml2]; }; randstr = derive2 { name="randstr"; version="0.2.0"; sha256="17593lbk6r089yasafd21i3v90ya9n92rflpzl0qicd2kqqk2gdh"; depends=[random stringi truncnorm]; }; @@ -10258,59 +10703,64 @@ in with self; { randtoolbox = derive2 { name="randtoolbox"; version="1.17.1"; sha256="13akf13qi4yhj9gapym05074b1qzk03vgysy81qsd73pd8r107ls"; depends=[rngWELL]; }; rangeBuilder = derive2 { name="rangeBuilder"; version="1.4"; sha256="1jjy1d3kljysm3mqgdszdi6incbmg2di63akxswfaiqcp1m68a6y"; depends=[alphahull cleangeo pbapply raster Rcpp rgdal rgeos sp stringi]; }; rangeMapper = derive2 { name="rangeMapper"; version="0.3-4"; sha256="0qrcxbh8saflqjmaa18fcyk5cqk6h4rz92zhqckswyqynx6m0cps"; depends=[classInt data_table foreach ggplot2 gridExtra lattice magrittr maptools raster RColorBrewer rgdal rgeos RSQLite sp]; }; + rangeModelMetadata = derive2 { name="rangeModelMetadata"; version="0.1.0"; sha256="0v0hn46s99hidfp0ln28hffyk3mzydxvqslkyif32zcdj0fxmc7l"; depends=[biomod2 dismo dplyr ecospat ENMeval googlesheets jsonlite MASS raster rgdal rgeos shiny sp spatstat spocc]; }; + rangemodelR = derive2 { name="rangemodelR"; version="1.0.3"; sha256="16pzmiazmfw14xvrlg0k9j15zrmz034hya41zl5z411d8rn0mqva"; depends=[]; }; ranger = derive2 { name="ranger"; version="0.10.1"; sha256="12z67xkgdmr5cflpd6cln0mn5xxajanqbfwlckv6cfma0gvf2z1j"; depends=[Matrix Rcpp RcppEigen]; }; rankFD = derive2 { name="rankFD"; version="0.0.1"; sha256="1zb9gxvsmv46mpw5znskhfjxnwkr59hdixcly6i3r78yaqgca0dz"; depends=[coin lattice MASS Matrix]; }; rankdist = derive2 { name="rankdist"; version="1.1.3"; sha256="1hdafy2zzn7hwl1lx5jksgi974zjn49dwih5s2zdyv4nnmmai003"; depends=[hash optimx permute Rcpp]; }; rankhazard = derive2 { name="rankhazard"; version="1.1.0"; sha256="0kljn9b74alrd22b5pwfnamdbaqi2wa2z6yzpmgpfs3x0hv72fw7"; depends=[survival]; }; rapiclient = derive2 { name="rapiclient"; version="0.1.2"; sha256="072rlr7z9rj4agkzmy12cz4axh4pajavfd83lpcx2b1lgxpj6ck4"; depends=[httr jsonlite]; }; - rapidjsonr = derive2 { name="rapidjsonr"; version="1.0.0"; sha256="064xqvyv83vl188rk18kgi4iaqq299d2y6fr24dk9lndpc4509kc"; depends=[]; }; + rapidjsonr = derive2 { name="rapidjsonr"; version="1.1"; sha256="0h4phjjhykbb45rg5b1xn48vqxdcvcngbm0416ds8in7j469wbwd"; depends=[]; }; rapidraker = derive2 { name="rapidraker"; version="0.1.0"; sha256="17jzkzm5hvd8vcqql40bwl89sfgz8yicvi0753nzgkmbvanzjhjx"; depends=[openNLPdata rJava slowraker]; }; rappdirs = derive2 { name="rappdirs"; version="0.3.1"; sha256="0ji6sg3bdn5gazkq14xmmcq7jnbsyxw4lzmmbgv6526j2vn93n1g"; depends=[]; }; rapport = derive2 { name="rapport"; version="1.0"; sha256="1i1zawar5yxw23km74mrvaxnc9hr06kqjvbm046c09cqi6pw0hjh"; depends=[pander rapportools stringr yaml]; }; rapportools = derive2 { name="rapportools"; version="1.0"; sha256="1sgv4sc737i12arh5dc3263kjsz3dzg06qihfmrqyax94mv2d01b"; depends=[pander plyr reshape]; }; raptr = derive2 { name="raptr"; version="0.1.2"; sha256="17aba9jxlvvf2946wy2y0ck5j85sqzkr8q1yk68cdqkf45lxkvz8"; depends=[adehabitatHR assertthat BH boot doParallel gdalUtils ggplot2 hypervolume ks Matrix mvtnorm PBSmapping plyr RandomFields raster RColorBrewer Rcpp RcppEigen rgdal rgeos RgoogleMaps scales shape sp]; }; + rare = derive2 { name="rare"; version="0.1.1"; sha256="0j78ilswiaxdp9107psiw8ibxncd7i81z2njhfqf0n7532pbvjss"; depends=[glmnet Matrix Rcpp RcppArmadillo]; }; rareGE = derive2 { name="rareGE"; version="0.1"; sha256="0v3a2wns77q923ilddicqzg0108f8kmfdnsff1n65icin7cfzsny"; depends=[MASS nlme survey]; }; rareNMtests = derive2 { name="rareNMtests"; version="1.1"; sha256="13r2hipqsf8z9k48ha5bh53n3plw1whb7crpy8zqqkcac8444b2z"; depends=[vegan]; }; rarhsmm = derive2 { name="rarhsmm"; version="1.0.7"; sha256="0pvqa6f0ib1jb0rwc6wv6hfinncb21v2g0y0hsy5l33gdagjw2sz"; depends=[glmnet Rcpp RcppArmadillo]; }; rasclass = derive2 { name="rasclass"; version="0.2.2"; sha256="1lsmv8kh519mz3szb4k9s17fz1480cw0i4qk12givhhm2rpzjy50"; depends=[car e1071 nnet randomForest RSNNS]; }; rase = derive2 { name="rase"; version="0.3-3"; sha256="03jqf5y5vj354m9psp81wzw6d7dfqr76bfjqv9kannsakkj587sy"; depends=[ape mvtnorm polyCub rgl sm spatstat]; }; - raster = derive2 { name="raster"; version="2.6-7"; sha256="009bwil3n9gaf11wzifwxyw9j6pl0pyjk3l5v7csd935si7q14gv"; depends=[Rcpp sp]; }; + raster = derive2 { name="raster"; version="2.7-15"; sha256="1b0js80bypy2nh91y12pfxqwldwq8y09dhkrjqkgj9n89k5fj55s"; depends=[Rcpp sp]; }; rasterImage = derive2 { name="rasterImage"; version="0.3.0"; sha256="0csx7wqwxdsddypd1c9wv74gcyymasn9n6pn05a35j6xhqbk2zp3"; depends=[plotrix]; }; rasterKernelEstimates = derive2 { name="rasterKernelEstimates"; version="1.0.1"; sha256="1733ic1hxym3gyibk2ysy5zzq7s9rbf6jx63x7irnrcavq151f8s"; depends=[raster]; }; rasterList = derive2 { name="rasterList"; version="0.5.8"; sha256="0q7apglxzpah04463z07cpkzyd6l6dbbdhm601brzh6yk75z20vh"; depends=[raster]; }; rasterVis = derive2 { name="rasterVis"; version="0.45"; sha256="0x1d28jn6l78lhccbnlnzyr18734f16rcfnfyl9vqpkrn7sgwc3i"; depends=[hexbin lattice latticeExtra raster RColorBrewer sp viridisLite zoo]; }; - ratelimitr = derive2 { name="ratelimitr"; version="0.3.9"; sha256="0w6i9czcbj8ipd9nn4w4h4pqk6xd8anh00cn60hss9hs18fcb21d"; depends=[assertthat]; }; + ratelimitr = derive2 { name="ratelimitr"; version="0.4.1"; sha256="06x759jxr5zcnvg9q120n5bpipkb16piw15kxrpk7i918mby889b"; depends=[assertthat]; }; ratematrix = derive2 { name="ratematrix"; version="1.0"; sha256="09nbgybgdgdkc6bdcxjiy1kdgv398lgih1aqzd7abj5lndlh8pny"; depends=[ape coda corpcor ellipse geiger MASS mvMORPH phylolm Rcpp RcppArmadillo readr]; }; rateratio_test = derive2 { name="rateratio.test"; version="1.0-2"; sha256="1a2v12z2dr893ha80fhada1820z5ih53w4pnsss9r9xw3hi0m6k5"; depends=[]; }; raters = derive2 { name="raters"; version="2.0.1"; sha256="16jnx6vv39k4niqkdlj4yhqx8qbrdi99bwzxjahsxr12ab5npbp1"; depends=[]; }; ratesci = derive2 { name="ratesci"; version="0.3-0"; sha256="1mdx47xpgjrjbb3lybajdmxb87dqr6cvv3fsvwfx0n629mjbih4z"; depends=[]; }; rationalfun = derive2 { name="rationalfun"; version="0.1-0"; sha256="15949vs9pdjz7426zhgqn7y87xzn79ikrpa2vyjnsid1igpyh0mp"; depends=[polynom]; }; ratios = derive2 { name="ratios"; version="1.2.0"; sha256="16q9v2lhgklvdp3hi9x3afdldznfpwg775p80m2g5074q2dzjpgg"; depends=[data_table stringr]; }; - rattle = derive2 { name="rattle"; version="5.1.0"; sha256="0xxf2wpazsk29y2byyk010n59vmzmhm4phpsqvklmsr1v3m10pvp"; depends=[cairoDevice dplyr ggplot2 magrittr RGtk2 rpart_plot stringi stringr tidyr XML]; }; + rattle = derive2 { name="rattle"; version="5.2.0"; sha256="099anyq4spb7dbikxb29aacqp4xswr66hxjgxiwcvhm9jjryb33v"; depends=[dplyr ggplot2 magrittr rpart_plot stringi stringr tidyr XML]; }; rattle_data = derive2 { name="rattle.data"; version="1.0.2"; sha256="0cnmyzvy23jc4vz521c3jg0w4165waycvy5014l5773fy19zq75c"; depends=[]; }; raw = derive2 { name="raw"; version="0.1.6"; sha256="0hnqwa9pwj3k2y0bs6hxrvbwksjyq0q6m73c9hhlafg8g3lkyxnf"; depends=[]; }; + rayshader = derive2 { name="rayshader"; version="0.5.1"; sha256="1qkv25p0n10zgs3r12i8kwgw6188c0k9a80wg9i12mjpy2pbrxmz"; depends=[doParallel foreach imager magrittr png progress raster Rcpp rgl scales]; }; rbacon = derive2 { name="rbacon"; version="2.3.4"; sha256="1va1rap2n6mcjfzclqg5h58ggrs2kb4nlaam5ch984w9rzq59g2l"; depends=[coda Rcpp]; }; rbamtools = derive2 { name="rbamtools"; version="2.16.11"; sha256="1pr1isq9yk5mpi41cnihg4zn5g9az7yr9m42759hibqqyb6nw78a"; depends=[refGenome]; }; - rbcb = derive2 { name="rbcb"; version="0.1.5"; sha256="0w76jgl75i36xb150m5vlqbd6k0nhxx34fcl0vw9l1in5pwd6qgw"; depends=[httr jsonlite tibble xml2 xts]; }; rbefdata = derive2 { name="rbefdata"; version="0.3.5"; sha256="12mcqz0pqgwfw5fmma0gwddj4zk0hpwmrsb74dvzqvgcvpfjnv98"; depends=[RColorBrewer RCurl rjson rtematres wordcloud XML]; }; rbenchmark = derive2 { name="rbenchmark"; version="1.0.0"; sha256="010fn3qwnk2k411cbqyvra1d12c3bhhl3spzm8kxffmirj4p2al9"; depends=[]; }; rbgm = derive2 { name="rbgm"; version="0.0.5"; sha256="1gz9hxlwmj2ch1ds6mx1nlkwy4fm811jkz5fz3cl6675n11bjdpg"; depends=[dplyr geosphere raster readr rlang sp stringr tibble]; }; rbhl = derive2 { name="rbhl"; version="0.8.0"; sha256="1avx36as99za19acjh7adb72ckdn69rmiwzcrrqxskzny56vxf0d"; depends=[crul jsonlite plyr tibble xml2]; }; rbi = derive2 { name="rbi"; version="0.9.1"; sha256="0jfaakzl15dz6bsbcd6y2pnf3bdccs3bx90c6hzsjpvck7fcvxpi"; depends=[data_table ncdf4 reshape2]; }; rbiouml = derive2 { name="rbiouml"; version="1.8"; sha256="0qvc896sf6idczbxix3klf56paxf0wpfbmga8qqlcyjasv1dsdql"; depends=[RCurl RJSONIO]; }; - rbison = derive2 { name="rbison"; version="0.6.0"; sha256="09mbhk56ns1qldgcj8qard3dsvsfbnlrq4s4drc46lr1s8lqjd1h"; depends=[crul dplyr ggplot2 jsonlite mapproj plyr sp]; }; + rbison = derive2 { name="rbison"; version="0.7.0"; sha256="0v9i45pdjdspc1xw1mm3zmmsdnq5s7s656mkkhssmhj603f3mswg"; depends=[crul data_table dplyr ggplot2 jsonlite mapproj plyr sp]; }; + rbit = derive2 { name="rbit"; version="1.0.0"; sha256="09ywr711gv0vgfims2vfcxk3rnd0iadzlksil0q9159yarapfc59"; depends=[R6]; }; rbitcoinchartsapi = derive2 { name="rbitcoinchartsapi"; version="1.0.4"; sha256="0r272jvjh3rzch8dmn4s0a5n5k6dsir7pr4qswzfvafqjdiwjajz"; depends=[RCurl RJSONIO]; }; rbmn = derive2 { name="rbmn"; version="0.9-2"; sha256="1zy832y399cmfmhpyfh7vfd293fylf1ylmp8w8krkmzkmyfa80f2"; depends=[MASS]; }; rbokeh = derive2 { name="rbokeh"; version="0.5.0"; sha256="1lpbph6bhh9rf5rs0ivp8dchx8i8ylz5nr7xc2xv9bnwlwj35729"; depends=[digest ggplot2 gistr hexbin htmlwidgets jsonlite lazyeval magrittr maps pryr scales]; }; rbounds = derive2 { name="rbounds"; version="2.1"; sha256="1h334bc37r1vbwz1b08jazsdrf6qgzpzkil9axnq5q04jf4rixs3"; depends=[Matching]; }; rbraries = derive2 { name="rbraries"; version="0.1.0"; sha256="12vdci4rzjvd419nxh99hpkhjlx86nsmrbjca0am5q0rkc68dgmj"; depends=[crul data_table fauxpas jsonlite tibble]; }; + rbtc = derive2 { name="rbtc"; version="0.1-5"; sha256="1yw5b8qgvznchqx0zndvkhcrl9ww4sn92x7khzwc9hlbr32j14ls"; depends=[gmp httr openssl rjson]; }; rbtt = derive2 { name="rbtt"; version="0.1.0"; sha256="1gbsb0vmqxcl28c5nn0rz95bxrvl7i0b17lq90cj5ahbk6x9jblz"; depends=[data_table]; }; rbugs = derive2 { name="rbugs"; version="0.5-9"; sha256="1kvn7x931gjpxymrz0bv50k69s1x1x9mv34vkz54sdkmi08rgb3y"; depends=[]; }; rbundler = derive2 { name="rbundler"; version="0.3.7"; sha256="0wmahn59h9vqm6bq1gwnf6mvfkyhqh6xvdc5hraszn1419asy26f"; depends=[devtools]; }; rbvs = derive2 { name="rbvs"; version="1.0.2"; sha256="1wzxz2ca8f1phhbqr9p7c8sk09cyrdq5jc45g4ddrqvi2q29k28y"; depends=[]; }; rcane = derive2 { name="rcane"; version="1.0"; sha256="0p2mgkq6fh0n289n2h19c52lnqxl05wvpmd6nwvgnjqwa4wwpa7r"; depends=[]; }; rcanvec = derive2 { name="rcanvec"; version="0.2.1"; sha256="0gsk2cfiysxjw2lrnpl2l524lvhh9nhnyyh79n8p7vykyqj711yn"; depends=[rgdal sp]; }; - rcarbon = derive2 { name="rcarbon"; version="1.1.3"; sha256="08gg72gakns9akcsi5j79jxsx8cngbzf3sg0qvpj22xsrp7amxr2"; depends=[doParallel foreach knitr sp]; }; + rcarbon = derive2 { name="rcarbon"; version="1.2.0"; sha256="0dd7x7i8d592gnn9c3dk706drd3irhi1k4iivlngfm44ck3wlpzn"; depends=[doParallel foreach knitr sp]; }; rcartocolor = derive2 { name="rcartocolor"; version="0.0.22"; sha256="1dh1n01v70sfmymg1w0f272j6nwnrzawqx5x4ljgh46pzqprx56r"; depends=[ggplot2 scales]; }; rcbalance = derive2 { name="rcbalance"; version="1.8.5"; sha256="15qlk3cqwsvixl17l1fxcajrabmz4y7q5gz0a1pd66f6i1xskcqq"; depends=[MASS plyr]; }; rcbsubset = derive2 { name="rcbsubset"; version="1.1.4"; sha256="0sfsmnxs4c8blzg0bb2ffb2xcsjv7pp39arnda988f7b2aas59wj"; depends=[MASS plyr]; }; @@ -10318,25 +10768,28 @@ in with self; { rccdates = derive2 { name="rccdates"; version="1.0.0"; sha256="1f87qlw62am2qy1zzrz91vmsn8axhld44gak61xa7046675hm98s"; depends=[rccmisc]; }; rccmisc = derive2 { name="rccmisc"; version="0.3.7"; sha256="171s2ll759xjdnx0z24ih5ix2vcp4qnmf1nf107gij6wv8k450ab"; depends=[dplyr]; }; rcdd = derive2 { name="rcdd"; version="1.2"; sha256="1s7idrfvl0hhyckrfiakszqw6fk34f9iiyxspzya3rqyhih014ay"; depends=[]; }; - rcdk = derive2 { name="rcdk"; version="3.4.7"; sha256="1r7cqr9adcbvw5zcnh0vpfahi5ywcjk8axhpj1pqrv24lb208c6j"; depends=[fingerprint iterators itertools png rcdklibs rJava]; }; + rcdk = derive2 { name="rcdk"; version="3.4.7.1"; sha256="1d08ajji631792b7fyfwzvcaswh8jlanfsxrj6c1wx7xh3qqpigg"; depends=[fingerprint iterators itertools png rcdklibs rJava]; }; rcdklibs = derive2 { name="rcdklibs"; version="2.0"; sha256="05g0y00bw1bqykfbwn4q42krwcfl50jcavaw7yyw9a5m34hvw0l8"; depends=[rJava]; }; rchallenge = derive2 { name="rchallenge"; version="1.3.0"; sha256="1qn2pzch5yk771jsjcsmfsi5vddfb2w50vfqlkmsl6nf5z6sdq9k"; depends=[knitr rmarkdown]; }; + rcheology = derive2 { name="rcheology"; version="3.5.1.1"; sha256="1yb9d55x6ffam4lirpfign3czx5c14nc1qz0cxqyi9ak63p9mb13"; depends=[]; }; rchess = derive2 { name="rchess"; version="0.1"; sha256="0qnvvvwcl02rmqra9m7qnhy40cbavswbq6i0jm47x6njmr1gpfhy"; depends=[assertthat dplyr ggplot2 htmlwidgets plyr R6 V8]; }; rcicr = derive2 { name="rcicr"; version="0.3.4.1"; sha256="1sa13sbhx64cf8szr2811iq4a1asb8d3k0igxw6fbssij2lwbxzp"; depends=[aspace dplyr jpeg matlab scales]; }; + rcites = derive2 { name="rcites"; version="0.1.0"; sha256="0n8wcyjj41ggmry9lrm7j4f1gcq8l97cdsknkgmb4a0l0da1c6xk"; depends=[data_table httr jsonlite]; }; rclimateca = derive2 { name="rclimateca"; version="1.0.2"; sha256="012p6vj78m43y8n85diaf5z11h4v0p4s898jmlipvsha11q60csn"; depends=[digest dplyr httr lubridate magrittr mudata2 prettymapr purrr readr reshape2 rlang stringr tibble tidyr]; }; rclipboard = derive2 { name="rclipboard"; version="0.1"; sha256="0qphr3qrp0k2gnzk27bgfiq3ff6b8564gmkrjw1kri1p7ilf71wx"; depends=[shiny]; }; - rcmdcheck = derive2 { name="rcmdcheck"; version="1.2.1"; sha256="04gh0drvkikn91i5zmpixhrhyjnsyxwz8k8bx4kgwwrmh1dc7f2s"; depends=[callr clisymbols crayon digest withr]; }; - rcompanion = derive2 { name="rcompanion"; version="1.13.2"; sha256="0kpr0pxfi8al6zdx0imp9nf9m98h8srimij7gf018ik4v6kjyjiv"; depends=[boot BSDA coin DescTools EMT hermite lattice lmtest multcompView nortest ordinal plyr RVAideMemoire WRS2]; }; + rcmdcheck = derive2 { name="rcmdcheck"; version="1.3.0"; sha256="13liz9lmx9xgc0f7pjiz3sp8ygvazx2zslbiwz3p9fimfsx1yfsg"; depends=[callr cli crayon desc digest pkgbuild prettyunits R6 rprojroot withr xopen]; }; + rcompanion = derive2 { name="rcompanion"; version="2.0.0"; sha256="1zbx4r43ql14hqwq6hpyy4dv7igbs6dl96127kriiyfvbkj0cmyw"; depends=[boot BSDA coin DescTools EMT lmtest multcompView nortest plyr]; }; rcongresso = derive2 { name="rcongresso"; version="0.4.6"; sha256="1xd07vlbcp3msmwvg2nk7acdx513v2wfbq64na0045rsv2v96m44"; depends=[dplyr httr jsonlite magrittr stringr tibble tidyr]; }; - rcoreoa = derive2 { name="rcoreoa"; version="0.1.0"; sha256="13nfziqxxljnczn3idq3zlc9xkklalfnxbakvhs5bw19jmbd11ba"; depends=[crul jsonlite pdftools]; }; - rcorpora = derive2 { name="rcorpora"; version="1.2.0"; sha256="0nxd2arzz2617xxcngvcrrrsky9f1b9zdmpv81zr89y08b3xh9f1"; depends=[jsonlite]; }; + rcoreoa = derive2 { name="rcoreoa"; version="0.3.0"; sha256="0z9kllhk1j7c4sgnd88ngxv7xvr396azg9vr9p6i72ficr7flr64"; depends=[crul hoardr jsonlite pdftools]; }; + rcorpora = derive2 { name="rcorpora"; version="2.0.0"; sha256="1b8xa81mn3afadz77576vda9b0d99f1k096drxrpqd989g993aqy"; depends=[jsonlite]; }; rcreds = derive2 { name="rcreds"; version="0.6.6"; sha256="1sdrdgn53kgcdnxfjs8jh0h538vb3b9ixz74lbnp54yp09jpqsri"; depends=[collectArgs digest jsonlite magrittr]; }; - rcrossref = derive2 { name="rcrossref"; version="0.8.0"; sha256="01k3jpd6awan8r4kc5wjw0did30i2bafzjr8mwaaqv87gni2yiyf"; depends=[bibtex crul dplyr jsonlite miniUI plyr R6 shiny stringr xml2]; }; + rcrossref = derive2 { name="rcrossref"; version="0.8.4"; sha256="1q58wngr28a0vrafwhxj8jvh42aprv2v1s68mdbbq30rn28yplj7"; depends=[bibtex crul dplyr DT jsonlite miniUI plyr R6 shiny stringr xml2]; }; + rcrtan = derive2 { name="rcrtan"; version="0.1.0"; sha256="1pg0w9amlxnzv5mrh4p3gnh8959m93dx8bfy2gvbm94isilb969z"; depends=[dplyr magrittr purrrlyr tibble tidyr]; }; rcrypt = derive2 { name="rcrypt"; version="0.1.1"; sha256="002r5wr0bmqbj014iz8wacj883j6gqcxc786m6p9a7zdrjpx2pqi"; depends=[]; }; - rcube = derive2 { name="rcube"; version="0.2"; sha256="1vfh0bg0awynbv0kafsn7sqj7sc2rjaap9rmy717qv9p0n6gkypr"; depends=[magrittr]; }; + rcube = derive2 { name="rcube"; version="0.3"; sha256="0y4sw67g0ws3iywbaz56ccg5q6n2885yfl8rvb45yvwjmdmbg85r"; depends=[magrittr]; }; rcure = derive2 { name="rcure"; version="0.1.0"; sha256="1pcdc168bwn0b90xy8sdwrm2yvhj26xj11wm8z84m48sxy56j4v8"; depends=[arm MASS plyr smcure survival]; }; rcv = derive2 { name="rcv"; version="0.2.1"; sha256="0i5z3a918ykl56dv3dvzwwcv550gvjjdg5kfh63jlpaxn9ybmv3f"; depends=[dplyr readr stringr tibble tidyr]; }; - rda = derive2 { name="rda"; version="1.0.2-2"; sha256="1g2q7c0y138i9r7jgjrlpqznvwpqsj6f7vljqqfzh2l6kcj43vjj"; depends=[]; }; + rda = derive2 { name="rda"; version="1.0.2-2.1"; sha256="1y4fawslr3i6crjaxhsdb47kfsqkyszdx6avq3r5far5a4pvc639"; depends=[]; }; rdatacite = derive2 { name="rdatacite"; version="0.4.0"; sha256="14p8albilnzf882m499zfps77jrx0zav9wpz3m047xgs2msnwxqw"; depends=[crul jsonlite oai solrium]; }; rdatamarket = derive2 { name="rdatamarket"; version="0.6.5"; sha256="1y4493cvhcgyg2j5hadx1fzmv2lzwan78jighi2dzyxxzv6pxccn"; depends=[RCurl RJSONIO zoo]; }; rdataretriever = derive2 { name="rdataretriever"; version="1.0.0"; sha256="1a1dbzs1jravbhidv9wcs52qbd6zf7wf26hixpqjwiq8gsq9l5gh"; depends=[]; }; @@ -10345,7 +10798,7 @@ in with self; { rddensity = derive2 { name="rddensity"; version="0.2.2"; sha256="10530il8fxpgcads6yvj09jwanldlpvjgjqcknl2wly4gmwcwjq9"; depends=[ggplot2 lpdensity]; }; rddtools = derive2 { name="rddtools"; version="0.4.0"; sha256="1z9sl9fwsq8zs1ygmnjnh3p6h9hjkikbm4z7cdkxw66y0hxgn96s"; depends=[AER Formula ggplot2 KernSmooth lmtest locpol np rdd sandwich]; }; rde = derive2 { name="rde"; version="0.1.0"; sha256="1zw9gdh90hl0wc5c0xwl5x7566r611wk73sbqdmpzpswjyyl9aqm"; depends=[clipr]; }; - rdefra = derive2 { name="rdefra"; version="0.3.4"; sha256="05fskap0vvrq08m4gql9gczy04lc3dgxgjcsb57dgp3nng358sf6"; depends=[dplyr httr lubridate rgdal sp tibble xml2]; }; + rdefra = derive2 { name="rdefra"; version="0.3.5"; sha256="0mj5xpr1xk0r2ph9fvbabmzrb9yqgdaj0bl76xrhkzisdkagf705"; depends=[dplyr httr lubridate rgdal sp tibble xml2]; }; rdetools = derive2 { name="rdetools"; version="1.0"; sha256="0pkl990viv7ifr7ihgdcsww93sk2wlzp2cg931wywagfp8dijd02"; depends=[]; }; rdflib = derive2 { name="rdflib"; version="0.1.0"; sha256="1xq378nfvbk8b2nbnr6yswqr351pgli7jcmhcr1ipynkl93rl5qm"; depends=[jsonld readr redland stringi]; }; rdfp = derive2 { name="rdfp"; version="0.1.2"; sha256="1kznr5p5mhplgpgmc0f4vrs1fwpivwjy52hwfc8k0q0vx53h3fs2"; depends=[curl dplyr httr lubridate plyr purrr readr XML xml2]; }; @@ -10354,23 +10807,23 @@ in with self; { rdist = derive2 { name="rdist"; version="0.0.3"; sha256="1jp3s4293h973dpz0waq9abpd8ibp4gxdyk3bwn7a32zfpk4kjza"; depends=[Rcpp RcppArmadillo]; }; rdiversity = derive2 { name="rdiversity"; version="1.2.1"; sha256="0j67b9mnq2xfbi2hrn1x9vgdv63779d0rcbzndljh37b1x5zlr22"; depends=[ape ggplot2 ggthemes phangorn phytools plyr reshape2 tibble tidyr]; }; rdlocrand = derive2 { name="rdlocrand"; version="0.3"; sha256="1cv69iy5sx9kdplpk9hnriqzgrm5mjbmhax4cybszhsyaly6r78d"; depends=[AER sandwich]; }; - rdmulti = derive2 { name="rdmulti"; version="0.1"; sha256="0a2nppb59054ns0ya3igva7xjaivnsj023fd30pzwca99zsmnx6s"; depends=[rdrobust]; }; - rdnb = derive2 { name="rdnb"; version="0.1-1"; sha256="1mg40jad79mk95ndnljvfvyh9rhbxkw7inpg2vbsixf1ywdljri3"; depends=[brew httr xml2]; }; + rdmulti = derive2 { name="rdmulti"; version="0.2"; sha256="1sl677kaq5qr2m9nzxfslwzai7h07mdfqjjzrak2xbpgqa44288z"; depends=[rdrobust]; }; + rdnb = derive2 { name="rdnb"; version="0.1-2"; sha256="1phb86jv2caayr4p95p68jrksai9w922rl3y5hjkw3gkc3jxn09f"; depends=[brew httr xml2]; }; rdoxygen = derive2 { name="rdoxygen"; version="1.0.0"; sha256="16907969w66xvy62k45rw10qfv4x8z6jkkc6i97vppkgnlvf4d4b"; depends=[devtools]; }; rdpla = derive2 { name="rdpla"; version="0.2.0"; sha256="0d32bp68z1agymcmjwnds4fkblhjrcx8i2q6f5b7sl4kdfdbjchf"; depends=[crul data_table hoardr jsonlite tibble]; }; - rdpower = derive2 { name="rdpower"; version="0.1"; sha256="1pi0g980zgy0h3kyiksnbpi59fksm17g9lxinqjf7xiam7pgw99n"; depends=[rdrobust]; }; - rdrobust = derive2 { name="rdrobust"; version="0.99.1"; sha256="18hq4nmyf8327qdbh7m8y0av6f21pcxaxfqs0qrc07yf6sdcj6ri"; depends=[]; }; + rdpower = derive2 { name="rdpower"; version="0.3"; sha256="1jdr18xrnws07iczi1f52l3py9fhxgvpina230jyr713hz99hzm3"; depends=[rdrobust]; }; + rdrobust = derive2 { name="rdrobust"; version="0.99.4"; sha256="0ykz9lgkr95l6h7jk9k8k0yv26hd4iyvgr9j298l388ry9w1ph9w"; depends=[]; }; rdrop2 = derive2 { name="rdrop2"; version="0.8.1"; sha256="1f4ysck58dm40k4wn9nfjaxym0mbgfkm146iidfkz7agmd1x0xyl"; depends=[assertive digest dplyr httr jsonlite magrittr purrr]; }; rdryad = derive2 { name="rdryad"; version="0.4.0"; sha256="19ca618hymvpk5byrrglc6iidsgm6wn43fypspssa7b3r1c4xhdc"; depends=[crul curl data_table oai solrium tibble xml2]; }; rdwd = derive2 { name="rdwd"; version="0.10.2"; sha256="18ghcg1arm5k2gan2h71bx0h27hsqr0mkajb5sha0ijyby3wa4h8"; depends=[berryFunctions pbapply]; }; re2r = derive2 { name="re2r"; version="0.2.0"; sha256="0xv355h4bps4a0picxmi6i15niq4knlail80fp9xvszyn72pm8gq"; depends=[htmlwidgets Rcpp RcppParallel stringi]; }; reGenotyper = derive2 { name="reGenotyper"; version="1.2.0"; sha256="13g4fhj25kdk6wbl1hcabcaxcpv0dj0hj2l502wl1aywk1fvmy8m"; depends=[gplots MatrixEQTL zoo]; }; - reReg = derive2 { name="reReg"; version="1.1.4"; sha256="0333r1rv9nshxmg7x2s5pdf7mk7pmpxdzfk617pmjkvf7qbfqfpa"; depends=[BB dplyr ggplot2 MASS nleqslv plyr purrr SQUAREM survival tidyr]; }; - reactR = derive2 { name="reactR"; version="0.2.0"; sha256="17jdcby95fxfa3imalllnqsp16py5vqqj4y0za4wli91vd37555q"; depends=[htmltools]; }; + reReg = derive2 { name="reReg"; version="1.1.6"; sha256="198vgf3294if9zmvl54pgx6ram63pswpjnh44fy7n60g8nza44bb"; depends=[BB dplyr ggplot2 MASS nleqslv plyr purrr SQUAREM survival tibble tidyr]; }; + reactR = derive2 { name="reactR"; version="0.2.1"; sha256="1abj3lh2vk4pni5gn2vb8sym2j2sx7yvnph86nz9hp6r270d0g86"; depends=[htmltools]; }; read_dbc = derive2 { name="read.dbc"; version="1.0.5"; sha256="1vrvxkcrk3iw5am9rsadxzf0wsr7z2mdpa5wb0v9jbhda710b4yf"; depends=[foreign]; }; readBrukerFlexData = derive2 { name="readBrukerFlexData"; version="1.8.5"; sha256="1qmimfxwh6d7s5qrnnk20i2f9l5j1ci3wpfs3qlmggz69jzf589m"; depends=[]; }; readHAC = derive2 { name="readHAC"; version="1.0"; sha256="0z80ai6xfswwgdfh83l9sq279c97n0wz25bk2l7xfb6w0sndzq53"; depends=[]; }; - readJDX = derive2 { name="readJDX"; version="0.2.3"; sha256="0qqzplyhpyhf24111y12r0h299wz86scjymfrym2ycxm04116vw5"; depends=[stringr]; }; + readJDX = derive2 { name="readJDX"; version="0.3.250"; sha256="0h7yfc0y4b67rhh949zknqyjx0jknsld1099y9x563a5lhzwrchv"; depends=[stringr]; }; readMLData = derive2 { name="readMLData"; version="0.9-7"; sha256="0l752j1jq37j9pdcsbmcb23b5l8fkfsbisfr3yjy3q4rxsphc7k6"; depends=[XML]; }; readMzXmlData = derive2 { name="readMzXmlData"; version="2.8.1"; sha256="03lnhajj75i3imy95n2npr5qpm4birbli922kphj0w3458nq8g8w"; depends=[base64enc digest XML]; }; readODS = derive2 { name="readODS"; version="1.6.4"; sha256="1kj648phxvpg480fdhr2sj4l8q306gjdl886zqnkwxif5mw1aq7g"; depends=[cellranger readr xml2]; }; @@ -10380,7 +10833,8 @@ in with self; { readbulk = derive2 { name="readbulk"; version="1.1.0"; sha256="0m02isvja0ihvy1fscjdl5f9gfdlmfmabgvpirgd2m9j3lz6mi8s"; depends=[plyr]; }; reader = derive2 { name="reader"; version="1.0.6"; sha256="1x489q3ljap4zpny68mx83mgxaqiwlkglcy57whwhnh33dd7qp4h"; depends=[NCmisc]; }; readit = derive2 { name="readit"; version="1.0.0"; sha256="1sq2spjgdc9rq8cr5i9qjmqd4vcf7cknpx5dndwjdqrv112y8bk9"; depends=[crayon haven jsonlite readr readxl]; }; - readobj = derive2 { name="readobj"; version="0.3"; sha256="0hwxfk27azay8hjz702b10cg395is06wnypqdw4788gm25d0i041"; depends=[Rcpp]; }; + readmnist = derive2 { name="readmnist"; version="1.0.6"; sha256="0f2kp5r04k47gpvbj8x13c47zsis3bw3y8f5f37sh6jggblqr004"; depends=[]; }; + readobj = derive2 { name="readobj"; version="0.3.1"; sha256="1hnmj6ydvdss7jbl3h16ip0g993wdfyfm15r8f78ihjlh84swima"; depends=[Rcpp]; }; readr = derive2 { name="readr"; version="1.1.1"; sha256="1cvw5wdcqk88cp5fyv678mnmp66l3whcd2yh33p2qvx0168bja8s"; depends=[BH hms R6 Rcpp tibble]; }; readroper = derive2 { name="readroper"; version="0.9.1"; sha256="153iy144c4yxcs2cwr73czy69b4fj4q1g77rb8qmvp6blfwdcd71"; depends=[readr]; }; readstata13 = derive2 { name="readstata13"; version="0.9.2"; sha256="02mqwpzn7n3pqjxivnd1vlfc47xkyiywfz594x0f6vd2dym8rdwd"; depends=[Rcpp]; }; @@ -10388,8 +10842,8 @@ in with self; { readxl = derive2 { name="readxl"; version="1.1.0"; sha256="05ii8knrg4jji6h7bv6bfpn279b6x52yrskdx5rv7b0hcpy22gdn"; depends=[cellranger Rcpp tibble]; }; realestateDK = derive2 { name="realestateDK"; version="0.1.0"; sha256="02y3c2zww9jakh9a0jqxkgcwshjz1hd5mw63603hyic7q4a07iv3"; depends=[statsDK]; }; reams = derive2 { name="reams"; version="0.1"; sha256="07hqi0y59kv5lg0nl75xy8n48zw03y5m71zx58aiig94bf3yl95c"; depends=[leaps mgcv]; }; - rebird = derive2 { name="rebird"; version="0.4.0"; sha256="1awwjr0gsd7hksh84fz5p17qwd857zn03fc2q0kzncy6q6iiw481"; depends=[dplyr httr jsonlite]; }; - rebmix = derive2 { name="rebmix"; version="2.10.2"; sha256="1m6h85kxp7lirx0pqhlibkd6f2wvgyhbmndrw308imkmzyqhgjz3"; depends=[mvtnorm]; }; + rebird = derive2 { name="rebird"; version="1.0.0"; sha256="0gp8afj6y3vss2b11v0fqyc3ai67kilicr4fnk5zghljfvbxsxm8"; depends=[assertthat dplyr httr jsonlite]; }; + rebmix = derive2 { name="rebmix"; version="2.10.3"; sha256="0yhazicibq8h2d7ldv59isapc6f68psawa3vrs1fdzwkrraj6893"; depends=[mvtnorm]; }; rebus = derive2 { name="rebus"; version="0.1-3"; sha256="0ms3dm6g0fq3jycpgjl7q7kyljxc97cczy2jj0lyviwmipdgjg9d"; depends=[rebus_base rebus_datetimes rebus_numbers rebus_unicode]; }; rebus_base = derive2 { name="rebus.base"; version="0.0-3"; sha256="1n2khszcya9k6379bdkq47xi2nw9jngiwj7z8a14wfswqydczv6y"; depends=[]; }; rebus_datetimes = derive2 { name="rebus.datetimes"; version="0.0-1"; sha256="09lv41mywm13avxb0xp8x1a2xz50zxazh3lpg27m16d4cgijmhm5"; depends=[rebus_base]; }; @@ -10398,24 +10852,24 @@ in with self; { recexcavAAR = derive2 { name="recexcavAAR"; version="0.3.0"; sha256="0b91jbgqzkgzvk658ckk639yyz1daa0xql3qgl0kzgqg68d53x20"; depends=[kriging Rcpp]; }; rechonest = derive2 { name="rechonest"; version="1.2"; sha256="0vpff8q5p6in7vjyl62bx3wmksravcg4mpx20qlgy5ia47vyhqp2"; depends=[httr jsonlite RCurl]; }; recipes = derive2 { name="recipes"; version="0.1.3"; sha256="1vqh3pxs4n1azhnd1lzg91vasya6g323kllhbrw177j7kdxqyimy"; depends=[broom ddalpha dimRed dplyr gower ipred lubridate magrittr Matrix pls purrr RcppRoll rlang tibble tidyr tidyselect timeDate]; }; - reclin = derive2 { name="reclin"; version="0.1.0"; sha256="1r88rk1yb19lhd1y69h016s26390cg5gnmxjjh143lynm3pbh0sv"; depends=[dplyr ldat lpSolve lvec Rcpp stringdist]; }; + reclin = derive2 { name="reclin"; version="0.1.1"; sha256="15qrdgjmclffivnljgmmipws9ks41fj4q40wnq0fk14mbv2045g2"; depends=[dplyr ldat lpSolve lvec Rcpp stringdist]; }; recluster = derive2 { name="recluster"; version="2.8"; sha256="05g8k10813zbkgja6gvgscdsjd99q124jx31whncc4awdsgk69s4"; depends=[ape cluster phangorn phytools picante vegan]; }; - recmap = derive2 { name="recmap"; version="0.5.33"; sha256="0znmsd7s25i2ildb4ysan10ih8s37rb8f794b6kp6cvy3zm81cbp"; depends=[GA Rcpp sp]; }; + recmap = derive2 { name="recmap"; version="1.0.0"; sha256="09aa6480lsrcqwh82rp9sijf720pkbihb5rrc3a74wr5svry7rd2"; depends=[GA Rcpp sp]; }; recoder = derive2 { name="recoder"; version="0.1"; sha256="0wh0lqp7hfd4lx2xnmszv1m932ax87k810aqxdb6liwbmvwqnfgd"; depends=[stringr]; }; recombinator = derive2 { name="recombinator"; version="1.0.0"; sha256="0amcpicsk270l9h7qgv764wp09phsffdpi4adcxrsrwiwm274ibw"; depends=[crayon]; }; recommenderlab = derive2 { name="recommenderlab"; version="0.2-3"; sha256="0lgfcwxy97cvi893k1dia3nng3yvclnmv95fszzmkcrf4qi9yy7q"; depends=[arules irlba Matrix proxy registry]; }; recommenderlabBX = derive2 { name="recommenderlabBX"; version="0.1-1"; sha256="042yh0h8qxj7n9hysrfdxnpb3g0zb6s5b683s7hn5mjc55q7nn4g"; depends=[recommenderlab]; }; recommenderlabJester = derive2 { name="recommenderlabJester"; version="0.1-2"; sha256="0kr9xc2gih2myn1a8h8dxxmdhibv1sjwjsvlrj9d5hvd1mgfhks5"; depends=[recommenderlab]; }; - reconstructr = derive2 { name="reconstructr"; version="2.0.0"; sha256="1pa6b8zns9495f1bdifvx19hsy5808hqbxb2bn1srwnr4s3ma1zi"; depends=[openssl Rcpp]; }; + reconstructr = derive2 { name="reconstructr"; version="2.0.2"; sha256="0pzpd2l1b6y1b1lnd95lpc5s8niz7p56vkmxgyi6g6b25vh9c2vi"; depends=[openssl Rcpp]; }; recosystem = derive2 { name="recosystem"; version="0.4.2"; sha256="1bn6l23gqmfpr6w60ph7zgv53vy3vnq9zdy5x0a8n1yp6b0lw48x"; depends=[Rcpp RcppProgress]; }; recurse = derive2 { name="recurse"; version="1.1.0"; sha256="1zgzzhbvdzqgmgzj43yvpyc7ahbkn96l5wyr1iqpnn3ha78fy0p3"; depends=[Rcpp]; }; red = derive2 { name="red"; version="1.4.0"; sha256="1z8ja8qbwgpbmy4ira9q6x482nw5rm4bksm82y0vc4gwpdxls5z3"; depends=[BAT dismo geosphere jsonlite maptools raster rgdal rgeos sp]; }; - redR = derive2 { name="redR"; version="1.0.0"; sha256="01safawd9ai34fqxjpc161yzpsk31hfyl8ybcfvdj7a9vdbvcb5i"; depends=[imager]; }; + redR = derive2 { name="redR"; version="1.0.1"; sha256="0bd1jzjip6p449m9ysi4kybxqljh2wj8z9mrgyk1cy08bjivd1cd"; depends=[imager]; }; reda = derive2 { name="reda"; version="0.4.1"; sha256="0aq6c2h694kdmjis12g4nxq5hdlzsi42nbnpzq7wic305l5r7nxl"; depends=[ggplot2 Rcpp RcppArmadillo splines2]; }; - redcapAPI = derive2 { name="redcapAPI"; version="2.1"; sha256="1xdhjr970cg7sr014rviznwg27d2rahc9nfj44b3fghv8jzfc272"; depends=[checkmate chron DBI httr labelVector lubridate stringr tidyr]; }; + redcapAPI = derive2 { name="redcapAPI"; version="2.2"; sha256="0bszw9px7ddcwnc1p3zpd8426mwym5369hglz3qm5x92va1j4036"; depends=[checkmate chron DBI httr labelVector lubridate readr stringr tidyr]; }; reddPrec = derive2 { name="reddPrec"; version="0.4.0"; sha256="0zmkaiivvjq8mcaz310zgjjc7y0wgsqv29bf8nhli5qawaczvb9a"; depends=[fields snowfall]; }; - redist = derive2 { name="redist"; version="1.3-1"; sha256="0rivfi3jpjvhd36rkhlazx4vr7wsig9lf3im1masjmzd4s00zrd8"; depends=[coda doParallel foreach Rcpp RcppArmadillo sp spdep]; }; - redland = derive2 { name="redland"; version="1.0.17-9"; sha256="01jx6r7zznb6cpi2bx36fpsgig3bkc1nv9afz5s2nfqisxiq48w5"; depends=[roxygen2]; }; + redist = derive2 { name="redist"; version="1.3-2"; sha256="0qkv2n9jianxm95vk2dqsqghhf2zirab8vhzc8cc8zichjv79f69"; depends=[coda doParallel foreach Rcpp RcppArmadillo sp spdep]; }; + redland = derive2 { name="redland"; version="1.0.17-10"; sha256="0k28896jsxy1qxnn6iyx3xxasq4y171xfjragqkj568nn9lmzfi8"; depends=[roxygen2]; }; redlistr = derive2 { name="redlistr"; version="1.0.1"; sha256="07zg0yzrcamaag5xcn33mh8i099r2gyz5p47f38lsg33j7am0m8n"; depends=[plyr raster rgeos sp]; }; redux = derive2 { name="redux"; version="1.1.0"; sha256="0a551w7fph338mqzxda6y21lsad19dway7w18jw9cv1rgvcp9nvc"; depends=[R6 storr]; }; refGenome = derive2 { name="refGenome"; version="1.7.3"; sha256="15p0ra2p1pwhy5ixbhsz1g79c5sc2aap4i4c8kil0m2syg9y45sn"; depends=[DBI doBy RSQLite]; }; @@ -10424,7 +10878,7 @@ in with self; { refinr = derive2 { name="refinr"; version="0.3.1"; sha256="0q76sr050pg3ahwzcxj08mjig0k2jq8yh7nv6d914pwg3dhq05sn"; depends=[Rcpp stringdist stringi]; }; refnr = derive2 { name="refnr"; version="0.1.0"; sha256="1gjjzxpyxm1kf1pqk99bd7f2j85rzmww3r1268bccivf19rs881i"; depends=[]; }; refset = derive2 { name="refset"; version="0.1.1"; sha256="1xbwvm9066g3f7pd34z5jh04vph4ddy2lkcgmf4kiwa1k5czpwg1"; depends=[]; }; - refuge = derive2 { name="refuge"; version="0.1.1"; sha256="1l9zbhx93f3ib978hlfvkczpy7c88g7ymwiq8grkycfzz52bfz0b"; depends=[dplyr httr jsonlite tibble]; }; + refuge = derive2 { name="refuge"; version="0.2.0"; sha256="15c1052dp13wcwxi15bnh3x700biw0jcy6b7532rqbgdkv67kqxn"; depends=[dplyr httr jsonlite tibble]; }; refund = derive2 { name="refund"; version="0.1-17"; sha256="1lz90y3zim0vl2gxiy4zw0qhkvg7i0p64jqabblnlx13f3lzn944"; depends=[boot fda gamm4 ggplot2 grpreg lattice lme4 magic MASS Matrix mgcv nlme pbs RLRsim]; }; refund_shiny = derive2 { name="refund.shiny"; version="0.3.0"; sha256="0r2xrm4wz35wn9zg4vvw2ysl7zzbz9i080vnbrlp4yrhhlkhpkm1"; depends=[dplyr ggplot2 gridExtra lme4 plotly refund reshape2 shiny tidyr]; }; refund_wave = derive2 { name="refund.wave"; version="0.1"; sha256="1vnhg7gi5r8scwivqjwhrv72sq8asnm4whx3jk39saphdxpk5hxv"; depends=[glmnet wavethresh]; }; @@ -10432,21 +10886,22 @@ in with self; { regclass = derive2 { name="regclass"; version="1.5"; sha256="0kha9b5ki55ggwh8cmlphg1alf1dq8if5dknisfbvd3f2x4dqf02"; depends=[bestglm leaps randomForest rpart rpart_plot VGAM]; }; regexPipes = derive2 { name="regexPipes"; version="0.0.1"; sha256="1hk0rhvmgzcyf5cyl8hjznl3ll25kpasqikfr6nxd6ian2slvmmb"; depends=[]; }; regexSelect = derive2 { name="regexSelect"; version="1.0.0"; sha256="0xnb9qa8l63ang4r40ky4qhlrs5mbzvmj98dgij26j3mq1ys1pa7"; depends=[shiny shinyjs]; }; - reghelper = derive2 { name="reghelper"; version="0.3.3"; sha256="0lsdsxi3nawqdzs7k1xma95mmywl86k517cihiv8q2s4maihsja3"; depends=[ggplot2 lme4 nlme]; }; + reghelper = derive2 { name="reghelper"; version="0.3.4"; sha256="03ddpa8dhvdsqv0fnbaai4rvblqcr8x6r9z42ljm166pnx5h0spk"; depends=[ggplot2 lme4 nlme]; }; registry = derive2 { name="registry"; version="0.5"; sha256="1yqfl1g6vsl28zn8brzc39659k8lqsmfms7900j7p64ilydyb2sx"; depends=[]; }; - reglogit = derive2 { name="reglogit"; version="1.2-5"; sha256="123l9n3m2v16skhj0rf77swlhy0ii6ridz13pp68hrxb72sr243c"; depends=[boot Matrix mvtnorm]; }; + reglogit = derive2 { name="reglogit"; version="1.2-6"; sha256="1nnn8n5sqhbd3nzmwnpmcsmaxxxaqwbna7xm7q9vk4cqz9cm9b9s"; depends=[boot Matrix mvtnorm]; }; regnet = derive2 { name="regnet"; version="0.3.0"; sha256="1jqy3zkxn3jms9fm950h1bvhvassbfa5yrl7222z3wa0w66kxpp0"; depends=[glmnet Rcpp RcppArmadillo]; }; - regplot = derive2 { name="regplot"; version="0.1"; sha256="1jw93pplg6qdrfv9jhnifkhclxzrhg84zs8gkfl0nb40jxb6pc34"; depends=[beanplot sm survival vioplot]; }; + regplot = derive2 { name="regplot"; version="0.2"; sha256="0j2mra5fqcixyl4wqwpzfng98rdh4xnl79ka7ilfi0jvz2jix84x"; depends=[beanplot sm survival vioplot]; }; regpro = derive2 { name="regpro"; version="0.1.1"; sha256="02axbq63hsqwg3q2ixr0lpsdai9q6wj57s5k1343q9m0pw90vr73"; depends=[denpro]; }; regress = derive2 { name="regress"; version="1.3-15"; sha256="1cgr0r49cmr8nzs2lr2cm8lli1i8azyas0lbnf1681kyab15c0r7"; depends=[]; }; regsel = derive2 { name="regsel"; version="0.2"; sha256="0wwwpawqsqimaldy0zxnqsy23nwp30ypa5dnrnndwhbs4qz99c9w"; depends=[elasticnet glmnet]; }; - regsem = derive2 { name="regsem"; version="1.1.2"; sha256="0d843h1kv78hsn48ibci6w7y69yqd3q32bidgsqs5dxk980kxcsk"; depends=[lavaan Rcpp RcppArmadillo]; }; + regsem = derive2 { name="regsem"; version="1.2.0"; sha256="156jvnxf885c42xpbd2ddakgxkbjmzanc240dzdc5z89a78vcy74"; depends=[lavaan Rcpp RcppArmadillo Rsolnp]; }; regspec = derive2 { name="regspec"; version="2.4"; sha256="18i6k2wqaddrc0dz7v8x3s9205dcfwanqhpnxa9hkpyqzbb17pd3"; depends=[]; }; regsubseq = derive2 { name="regsubseq"; version="0.12"; sha256="0879r4r8kpr8jd6a3fa9cifm7cv0sqzz8z1alkm1b2fr1625md3g"; depends=[]; }; regtest = derive2 { name="regtest"; version="0.05"; sha256="1wrrpp2hvkas0yc512gya3pvd0v97pn4v51k5jxkwyd1pp68zd1q"; depends=[]; }; regtools = derive2 { name="regtools"; version="1.0.1"; sha256="0807r8721qmdl8ahvlzcvqaq2rfvlvhblwbwdpi79fm7dk8vvq1i"; depends=[car dummies FNN mvtnorm]; }; rehh = derive2 { name="rehh"; version="2.0.2"; sha256="00wxx6w9ahddrg3lz14cqyg3dn0rfcxwy1z8arhdp1pn8d48pahw"; depends=[gplots rehh_data]; }; rehh_data = derive2 { name="rehh.data"; version="1.0.0"; sha256="1jkvwmnnmfa7iyvrabgcfzw3vfzx0dlgq47s6yf4zayi437v4di0"; depends=[]; }; + reinforcedPred = derive2 { name="reinforcedPred"; version="0.1.0"; sha256="1q83wnp935wr3z7rzfc6jrqm4p72diq1g0mdn69xnv2ljim4ps83"; depends=[glmnet MASS refund]; }; reinforcelearn = derive2 { name="reinforcelearn"; version="0.1.0"; sha256="025v8flr8q2p473kz760vywczhvx8b4lakm6rasr9ijgxpbd2jpn"; depends=[checkmate nnet purrr R6]; }; reinstallr = derive2 { name="reinstallr"; version="0.1.4"; sha256="1fcmy2cyqy4zwh815j2jbmziaiq6kypwsnj5bx0f10dlq3522m5q"; depends=[]; }; reinsureR = derive2 { name="reinsureR"; version="0.1.0"; sha256="19ayikzcq6z4i7xrlby76yy2nwvrsv6xdfrmvzyr7rz934flh8kd"; depends=[data_table dplyr ggplot2 viridis viridisLite]; }; @@ -10465,135 +10920,144 @@ in with self; { relevent = derive2 { name="relevent"; version="1.0-4"; sha256="10bf1s7jmas8ck1izqibqcaqg4z55ciwdpd9pm2697y8z0jhr2rj"; depends=[coda sna trust]; }; reliaR = derive2 { name="reliaR"; version="0.01"; sha256="000nafjp386nzd0n57hshmjzippiha6s6c4nfrcwl059dzmi088i"; depends=[]; }; relimp = derive2 { name="relimp"; version="1.0-5"; sha256="0ydn82g8xdqzhf34187080bbpcpw1zdjbj2i3dv1d6d35vvprb5c"; depends=[]; }; - relsurv = derive2 { name="relsurv"; version="2.1-2"; sha256="0hcvp1n8cvcnpqhwi1gcj3krzsarsk73ivwi75bvsvr3dpgxnwrm"; depends=[date survival]; }; - rem = derive2 { name="rem"; version="1.2.8"; sha256="1w0lkxjhyssl9343z6lw7dn0cazz9firglvcf74nls4ngkgv0bbd"; depends=[doParallel foreach Rcpp]; }; + relsurv = derive2 { name="relsurv"; version="2.2-2"; sha256="1r8gmqq4jnn697d4a6m48lf4kzkk6cq160ici60zfd7vb1b1y4vf"; depends=[date survival]; }; + rem = derive2 { name="rem"; version="1.3.1"; sha256="1q4p26irhhl1lvc0ydv9wmng1y635zm16szpl7gwq1kyn2p90rai"; depends=[doParallel foreach Rcpp]; }; remMap = derive2 { name="remMap"; version="0.2-0"; sha256="1k2niiaq2lr4inrx443clff9cqqvyiiwd45k7yqjd8ixnbaa3mrk"; depends=[]; }; rematch = derive2 { name="rematch"; version="1.0.1"; sha256="0y3mshvpvz9csmq8hk8jbabx4nxlv5sckvfzvm6920ndg34xw2d4"; depends=[]; }; rematch2 = derive2 { name="rematch2"; version="2.0.1"; sha256="16k0i5p7fa3qfxv59ijyn638wpz8n4jrkrnilqmh5g9l8f8bn4h6"; depends=[tibble]; }; remindR = derive2 { name="remindR"; version="0.0.1"; sha256="0b27v2qm3z8l9vcng8f0rkphjidxkw5n017ysflx180qjizqq632"; depends=[assertthat]; }; remote = derive2 { name="remote"; version="1.2.1"; sha256="1ihzjxbvas7396cwsi9am4pl94naxa9dnhbnh8k0l5p4a50mk33w"; depends=[gridExtra latticeExtra mapdata raster Rcpp scales]; }; remoter = derive2 { name="remoter"; version="0.4-0"; sha256="1a7m63l8phv5jnazvdqdrqkaqjwqzaac5y4jm2jn0ypy4n8jvkfl"; depends=[argon2 getPass pbdZMQ png]; }; - remotes = derive2 { name="remotes"; version="1.1.1"; sha256="07sxlwd09jzlfn7xakw9hwkr9k970lw2mnl0l3rpb5w71968km98"; depends=[]; }; + remotes = derive2 { name="remotes"; version="2.0.1"; sha256="1xkzlciv68jyf4j8hads0i47nxbgsy1kv7258c6zzyq66z0amhss"; depends=[]; }; renpow = derive2 { name="renpow"; version="0.1-1"; sha256="0kbfpzr17fvf5zzxpzdhvfmrqmlkba2w3rzxl5q5ac1w3h75gfhc"; depends=[]; }; rentrez = derive2 { name="rentrez"; version="1.2.1"; sha256="115ffrmsg755ynfwywql7xkcnlvv8ch4nlr1ab11i5923fz6vkvl"; depends=[httr jsonlite XML]; }; repeated = derive2 { name="repeated"; version="1.1.0"; sha256="0cdyzhhv89186q5nwablcjbqvm7ncq2w5d09iidbajrac9wd1y60"; depends=[rmutil]; }; + repec = derive2 { name="repec"; version="0.1.0"; sha256="0alr9fbmfxmnnnn1qymy65crcycynwz435jj0vangbb4p0qhv8pm"; depends=[jsonlite]; }; repfdr = derive2 { name="repfdr"; version="1.2.3"; sha256="0jpk44arg1jib0h2w90h851bs5cd1ss32fab9bfvf9iir2jk8985"; depends=[Rcpp]; }; repijson = derive2 { name="repijson"; version="0.1.0"; sha256="16iypvsmh5r9pk2k6npp17ya5dgkxihsj29pppd3zvdpm3vvd8k1"; depends=[geojsonio ggplot2 jsonlite OutbreakTools plyr sp]; }; replicatedpp2w = derive2 { name="replicatedpp2w"; version="0.1-2"; sha256="0nskwkqm9z2aphpim6pvykhc3fphlsbap3r49nghkwjpngd0qzj8"; depends=[spatstat spatstat_utils]; }; replicationInterval = derive2 { name="replicationInterval"; version="2.0.1"; sha256="1jyvyqr8r2fs1cmbz7zjcc8p116bnkslvx27pqi92y5pxgqvsqvr"; depends=[ggplot2 MASS MBESS pbapply]; }; - replyr = derive2 { name="replyr"; version="0.9.6"; sha256="1ffx8ziiiqpixabypk4lwnzvnrrylfl40rrjq4c3ys83gnbjm5n2"; depends=[DBI dplyr rlang wrapr]; }; + replyr = derive2 { name="replyr"; version="0.9.8"; sha256="086ck4vgjamifx621pkc9lyw96brvwhr1gfg4j5amg7r8llfws7r"; depends=[DBI dplyr rlang wrapr]; }; repmis = derive2 { name="repmis"; version="0.5"; sha256="0z5mjbsl24yjbl0aawr35grcal44rf2xbwv1hy7bdkms94ix79b5"; depends=[data_table digest httr plyr R_cache]; }; repo = derive2 { name="repo"; version="2.1.3"; sha256="1g72zvj2mg8cxfy1w3d46lkk4hayad64ns5w1y43731whzraxk95"; depends=[digest]; }; repolr = derive2 { name="repolr"; version="3.4"; sha256="13kmy09c7lk8p1mkdss0krcsfb6d7zcnqpwnl38zkanvh8q3fqhm"; depends=[Matrix Rcpp RcppArmadillo]; }; - reportROC = derive2 { name="reportROC"; version="3.0"; sha256="0jq3y1mia7nsnab14axyrvafw2b64g2zq25n42zplvm4pyfh1czr"; depends=[pROC]; }; + reportROC = derive2 { name="reportROC"; version="3.2"; sha256="1fskkligymxxfxbimd1sg1lhrd3pj62nkc41wpxfwacfr1zx57qb"; depends=[pROC]; }; reportReg = derive2 { name="reportReg"; version="0.2.0"; sha256="063z2szsainld9yb0hmpw23ij4d52qs6zjvdfdzj9h48qd50h38d"; depends=[nlme]; }; reportRx = derive2 { name="reportRx"; version="1.0"; sha256="0npiflql0lq8sqp6xgydxbw7xdr0zdxj1s2h4bnpmn4clc05r7m4"; depends=[aod cmprsk geoR reshape stringr survival xtable]; }; - reportr = derive2 { name="reportr"; version="1.2.2"; sha256="1fl4hy4ck4aapy152vn9gjd7w5vgvh2gz2ky6p0wwahah7m9b255"; depends=[ore]; }; + reportr = derive2 { name="reportr"; version="1.3.0"; sha256="0zynplxqvbmf23cm2rsz3wz2jx6mv55z94mn1k44ny3lx625cnpw"; depends=[ore]; }; reports = derive2 { name="reports"; version="0.1.4"; sha256="0r74fjmdqax2x5fhbkdxb8gsvzi6v794fh81x4la9davz6w1fnxh"; depends=[]; }; reporttools = derive2 { name="reporttools"; version="1.1.2"; sha256="1i87xmp7zchcb8w8g7nypid06l2439qyrvpwsjz6qny954w6fa2b"; depends=[xtable]; }; repr = derive2 { name="repr"; version="0.15.0"; sha256="0myg8d9idpp0gbi7nmcrjq3fa0zy4v73hkg6g5zlpw5vhsmvi8h0"; depends=[base64enc htmltools]; }; represent = derive2 { name="represent"; version="1.0"; sha256="0jvb40i6r1bh9ysfqwsj7s1g933d7z5fq9d618yjrqr6hbbqsvac"; depends=[]; }; represtools = derive2 { name="represtools"; version="0.1.2"; sha256="1zkabch49q23kd1786km5cb9wcaccbxds11v9hwjzsgrs15g5w35"; depends=[whisker]; }; - reprex = derive2 { name="reprex"; version="0.2.0"; sha256="1l44pxjiz3g0jkk3v6rg5jps3llihfiah0qyv40s0bxvxa6gm8v9"; depends=[callr clipr rlang rmarkdown whisker withr]; }; + reprex = derive2 { name="reprex"; version="0.2.1"; sha256="1ws5gds453xgfili87r35rz1wn2i7jbqissq98csbiddpkgls8sx"; depends=[callr clipr fs rlang rmarkdown whisker withr]; }; reproducer = derive2 { name="reproducer"; version="0.1.9"; sha256="092gz58sanpawgg0jk1634x9ki0jw460csbb6cywp0ndghswfgwh"; depends=[ggplot2 gridExtra lme4 MASS metafor openxlsx xtable]; }; - reproducible = derive2 { name="reproducible"; version="0.2.0"; sha256="0qaf9sx270hv73vggkschfwqvg39bmjvnz8wywvia722l3bjkh34"; depends=[archivist crayon data_table devtools digest dplyr fastdigest fasterize gdalUtils git2r googledrive httr magrittr memoise quickPlot R_utils raster Rcpp RCurl rgdal rgeos sf sp versions]; }; + reproducible = derive2 { name="reproducible"; version="0.2.3"; sha256="1cx6d07lsc6x122i1khgqfzh3nzxxfr4kxs0mjp0ghbsvnpk1rg9"; depends=[archivist backports crayon data_table devtools digest dplyr fastdigest fasterize gdalUtils git2r googledrive httr magrittr memoise quickPlot R_utils raster Rcpp RCurl rgdal rgeos sf sp versions]; }; repurrrsive = derive2 { name="repurrrsive"; version="0.1.0"; sha256="1ffldcs30xa4wcd825bgpcmqsndfyxx70dfmbb3c86ic9kq17p01"; depends=[tibble]; }; reqres = derive2 { name="reqres"; version="0.2.1"; sha256="056cjdx0nmf32vma2jkpbaznbaf76kc4jn0w6nv7blq33qlvx37z"; depends=[assertthat brotli jsonlite R6 stringi urltools webutils xml2]; }; request = derive2 { name="request"; version="0.1.0"; sha256="1q7zd6q00gdqmgq7s7nq1ixmns8zn2amr5zah9rwnsn8dkllj9yh"; depends=[curl httr jsonlite lazyeval magrittr R6 whisker]; }; requireR = derive2 { name="requireR"; version="1.0.0.1"; sha256="192l7i3q7s2a6n737an3fn258agjsdzh0q2w0vc8jbz7v4f3i92d"; depends=[]; }; rerddap = derive2 { name="rerddap"; version="0.4.2"; sha256="0jn5fqjjn4nqn6hyaiadq8xdg7vd23l09h9ax6nq8r5iiizpv249"; depends=[data_table digest dplyr hoardr httr jsonlite ncdf4 tibble xml2]; }; - rerf = derive2 { name="rerf"; version="1.0"; sha256="04q2g9pn34cvvzf790s6wlxd3v2qhwi7yx57cmm3h1ak9b4a6ics"; depends=[dummies Rcpp RcppArmadillo RcppZiggurat]; }; + rerf = derive2 { name="rerf"; version="1.1.3"; sha256="0mc55rwqbqxr655m6rgn5i63yg0pyn225yrmrd46b9h76j5hz3aj"; depends=[dummies Rcpp RcppArmadillo RcppZiggurat]; }; resample = derive2 { name="resample"; version="0.4"; sha256="1rckzm2p0rkf42isc47x72j17xqrg8b7jpc440kn24mqw4szgmgh"; depends=[]; }; - resampledata = derive2 { name="resampledata"; version="0.2.0"; sha256="1s683jhrpkhcn7cxjx5cipgkrbmhk5jr7hxniwc8ka7cbq3y22wl"; depends=[]; }; + resampledata = derive2 { name="resampledata"; version="0.3.0"; sha256="09hp97zk31f016d65vq64gv413c6bx1dwqy74ai34xk00flkwady"; depends=[]; }; resemble = derive2 { name="resemble"; version="1.2.2"; sha256="189a6b1y720w9ff8cyqazd2d3v1msbfw8zdqr5rmilxvxmnspccs"; depends=[foreach iterators Rcpp RcppArmadillo]; }; reservoir = derive2 { name="reservoir"; version="1.1.5"; sha256="1qvjq8j2gxp6b8m3k3822f9na8a1kbwzzsmq70m763dcq293rgiz"; depends=[gtools]; }; - reshape = derive2 { name="reshape"; version="0.8.7"; sha256="14ir3w4bb3bsz8jsak27nj7kpn227pdgr9653gjq5wc93rywi9ig"; depends=[plyr]; }; + reshape = derive2 { name="reshape"; version="0.8.8"; sha256="0s6i0sqxg1vldxs6miv8mi0zydxbqzgpmzfiwkj8y7jix3yrfmad"; depends=[plyr]; }; reshape2 = derive2 { name="reshape2"; version="1.4.3"; sha256="03ki5ka1dj208fc0dclbm0b4xp9d769pah2j9cs34l776p4r9zwa"; depends=[plyr Rcpp stringr]; }; reshapeGUI = derive2 { name="reshapeGUI"; version="0.1.0"; sha256="0kb57isws8gw0nlr6v9lg06c8000hqw0fvhfjsjyf8w6zwbbq3zs"; depends=[gWidgets gWidgetsRGtk2 plyr reshape2]; }; - respirometry = derive2 { name="respirometry"; version="0.6.0"; sha256="0dglmf3m8wpqs3jlza6lj8hamb1j1h8b85a4bfrcwkyap7pggcc5"; depends=[birk lubridate marelac measurements seacarb]; }; + respirometry = derive2 { name="respirometry"; version="0.7.0"; sha256="1anmi0pc54gbrbwcpx7sn8p2cqpyf7d5bf3v9zp4mzy4g7nx7vvj"; depends=[birk lubridate marelac measurements seacarb segmented]; }; restfulr = derive2 { name="restfulr"; version="0.0.13"; sha256="1dk45mzrr6ka92yjz7hfhkj12kpx1wg4szv1h1mg80mgga4ganbv"; depends=[RCurl rjson S4Vectors XML yaml]; }; restimizeapi = derive2 { name="restimizeapi"; version="1.0.0"; sha256="1ss6fng5pmqg6cafc256g9ddz8f660c68ysxfan6mn4gdaigz7lb"; depends=[RCurl RJSONIO]; }; restlos = derive2 { name="restlos"; version="0.2-2"; sha256="083w1ldax8bnf3w4119damma2nz75c3ki187b0275i1mqxqrixp7"; depends=[geometry igraph limSolve rgl som]; }; restrictedMVN = derive2 { name="restrictedMVN"; version="1.0"; sha256="0qynkg244gzq0yjb0716w7g1sxdq66i11ss8jij86h2mz3ykj137"; depends=[MASS]; }; - restriktor = derive2 { name="restriktor"; version="0.1-80.711"; sha256="10kbfr7gzah119xm4cnx7br9i9fcga38kymjajw7m2571f4jsji9"; depends=[boot ic_infer lavaan MASS mvtnorm quadprog]; }; + restriktor = derive2 { name="restriktor"; version="0.1-80.811"; sha256="0yyaiv5777apf2hwf7kyhya9pxkqvsj94shn310dl7gfxks5bvqd"; depends=[boot ic_infer lavaan MASS mvtnorm quadprog]; }; resumer = derive2 { name="resumer"; version="0.0.3"; sha256="0ilya3v75989zqm16x69w4599ax2s5j2n6f16bmhwydrmzxs1g48"; depends=[dplyr rmarkdown useful]; }; rethinker = derive2 { name="rethinker"; version="1.1.0"; sha256="02zfx08s5xisv1v4y16iqbddi9kb3fcr249b3414fzvs4nm5as94"; depends=[rjson]; }; - reticulate = derive2 { name="reticulate"; version="1.8"; sha256="0zwb4ikf021nw7axdn7qlr6bq4xkph3anfy314idkspy1iil4nmr"; depends=[jsonlite Matrix Rcpp]; }; + reticulate = derive2 { name="reticulate"; version="1.10"; sha256="0bz3lxbisjwn6cv23090zivpy0bxcncr82g5qja13l37i8xnvqsq"; depends=[jsonlite Matrix Rcpp]; }; retimes = derive2 { name="retimes"; version="0.1-2"; sha256="019sllyfahlqnqry2gqw4w5cy4cavrqnwpwrbb25cgjpdb19raja"; depends=[]; }; retistruct = derive2 { name="retistruct"; version="0.5.12"; sha256="11m4i29i3zqh9chyjgdhzqj4yqlslfm8y4q0x14xxc2r9lqbkj9l"; depends=[foreign geometry png R_matlab rgl RImageJROI RTriangle sp ttutils]; }; reutils = derive2 { name="reutils"; version="0.2.3"; sha256="09dhf4s7wz3anrkzqi16abx64gk8ck2142kfd8pv71mjy3x548l7"; depends=[assertthat jsonlite RCurl tibble XML]; }; reval = derive2 { name="reval"; version="2.0.0"; sha256="1yxkyc6wdp5h3cp8i42a9cf0b1cwr4nmpd7svlp7bpfxlcnqqa0d"; depends=[doParallel foreach]; }; revdbayes = derive2 { name="revdbayes"; version="1.3.2"; sha256="09xxy3yk2fwd0113dgsz0kd2k1k1ghjv9ay2n03b5cnxqaksa99s"; depends=[bayesplot Rcpp RcppArmadillo rust zoo]; }; + revealedPrefs = derive2 { name="revealedPrefs"; version="0.4"; sha256="1xd1bvji99mgnz772naz95i0xnrvqdkwxjj7mjblk2qdym95s1d0"; depends=[pso Rcpp RcppArmadillo]; }; revealjs = derive2 { name="revealjs"; version="0.9"; sha256="0h4csxrcl1rzmj3g01nf0mr990zc8swrf4jvmxwqsyzx9v2cqbnc"; depends=[rmarkdown]; }; - revengc = derive2 { name="revengc"; version="1.0.0"; sha256="0ccbw61xqjf9y15ghhzx57q3l48xpw9pq2nb11nrqapp5w3f9vzy"; depends=[stringr]; }; + revengc = derive2 { name="revengc"; version="1.0.3"; sha256="0hls00hnwq9f72v4dnaqsmz81lzddvma81p38qrl85v792l16q61"; depends=[dplyr mipfp stringr truncdist]; }; revgeo = derive2 { name="revgeo"; version="0.15"; sha256="1ns7d1817475lriss6wwgvdm6lj760p40yxqaifla13c2xb73a55"; depends=[RCurl RJSONIO]; }; revtools = derive2 { name="revtools"; version="0.2.2"; sha256="0sn7k5vcp09vp6j1bf879jrig382ayhfnwp569z9dxgdh7s18v6n"; depends=[ade4 modeltools plotly shiny shinydashboard SnowballC stringdist tm topicmodels viridisLite]; }; reweight = derive2 { name="reweight"; version="1.2.1"; sha256="0fv7q1zb3f4vplg3b5ykb1ydwbzmiajgd1ihrxl732ll8rkkfa4v"; depends=[]; }; rex = derive2 { name="rex"; version="1.1.2"; sha256="0alsadgjgass3wr8y5d247j12qqzg454sc84vpskclrkmz778g5x"; depends=[lazyeval magrittr]; }; - rexpokit = derive2 { name="rexpokit"; version="0.26.3"; sha256="0af9h7p4gx627iin3l8hbwhkf7yfdrr900a1rq8ib9p4ip7inxmd"; depends=[Rcpp]; }; - rfPermute = derive2 { name="rfPermute"; version="2.1.5"; sha256="0c7yi395j640mvnr1qlm9hy1w6vva33fa2lqb3amzkafy4j1cs63"; depends=[abind ggplot2 gridExtra randomForest reshape2 swfscMisc]; }; + rexpokit = derive2 { name="rexpokit"; version="0.26.6"; sha256="06h2k1jzn9rvbgyhhgnshwdajl9psks1sx09108appyf7sqlb9bp"; depends=[Rcpp]; }; + rfPermute = derive2 { name="rfPermute"; version="2.1.6"; sha256="198vvf8jdcjiv55hmlzd4f9jwr55yxk8m3s6dr9lkcq5r4h6xmrk"; depends=[abind dplyr ggplot2 gridExtra magrittr plyr randomForest reshape2 rlang scales swfscMisc tibble tidyr viridis]; }; rfUtilities = derive2 { name="rfUtilities"; version="2.1-3"; sha256="0vnhvdkqqqn894abznw97j07gwdvvmvk8vsf4aaxx9yzk44cnk5g"; depends=[cluster randomForest]; }; + rfacebookstat = derive2 { name="rfacebookstat"; version="1.8.3"; sha256="1a9xj0hpbvjp70v8rim0vpqpdjf6x81jw47nzjl9iggny3c1nb1m"; depends=[bitops data_table dplyr httr jsonlite RCurl]; }; rfbCNPJ = derive2 { name="rfbCNPJ"; version="0.1.1"; sha256="0zvpazxi184ia2wql0120kw7665dn9cs8a2kv91n79pncabb4xfg"; depends=[fs glue httr magrittr progress purrr readr stringr tibble xml2]; }; rfigshare = derive2 { name="rfigshare"; version="0.3.7"; sha256="1qgzn0mpjy4czy0pnbi395fxxx84arkg8r7rk8aidmd34584gjiq"; depends=[ggplot2 httpuv httr plyr RJSONIO XML yaml]; }; rfishbase = derive2 { name="rfishbase"; version="2.1.2"; sha256="1w8jk6qfhyzzmxf8qnqqwckm4syrqimi8k6dqmwflgxz6bsxcz0v"; depends=[dplyr httr lazyeval tidyr]; }; rfisheries = derive2 { name="rfisheries"; version="0.2"; sha256="16j3hn1py8khqadmh81qsg76c62wzqkaq3fn39z0z5mgynmcm62j"; depends=[assertthat data_table ggplot2 httr rjson]; }; rfm = derive2 { name="rfm"; version="0.1.0"; sha256="0bd71qk6vrd0jnnwdwlh30mn8v8dwwgmffrd71kbq83gbfp8ry3l"; depends=[assertthat dplyr forcats ggplot2 lubridate magrittr purrr RColorBrewer rlang shiny tidyr]; }; rfml = derive2 { name="rfml"; version="0.1.0"; sha256="133adpfjpp14m47841k6ybq9lrvby9bxgr5zs4i3akjr2575nq1j"; depends=[httr jsonlite PKI XML]; }; - rfoaas = derive2 { name="rfoaas"; version="1.1.1"; sha256="1rglqmbhnasc3ciypms3qqgfaj19202cnqdimsi69lvig2rnkca5"; depends=[httr]; }; + rfoaas = derive2 { name="rfoaas"; version="2.0.0"; sha256="04wx3d6v9zci6i5k3c4nfdycgjmng7f533b9k84kf1pa4lwp45ad"; depends=[httr]; }; rfordummies = derive2 { name="rfordummies"; version="0.1.3"; sha256="13jqvww65wzac1c8ajkljz89vi4j76y9ga52w3ygajjzg0rn15l5"; depends=[]; }; rforensicbatwing = derive2 { name="rforensicbatwing"; version="1.3.1"; sha256="1i521h2nmlkhcxfxqir8jfjv0llwr6cz0ck5w6hzplk48044bn16"; depends=[Rcpp]; }; rgabriel = derive2 { name="rgabriel"; version="0.7"; sha256="1c6awfppm1gqg7rm3551k6wyhqvjpyidqikjisg2p2kkhmyfkyzx"; depends=[]; }; rgam = derive2 { name="rgam"; version="0.6.6"; sha256="0klf2prw5zj76az66c5hzv23yya1b45l61xdy1zbnggvwh62fqik"; depends=[Rcpp RcppArmadillo]; }; - rgbif = derive2 { name="rgbif"; version="1.0.0"; sha256="1bjapaxp84rm8p7qp3w814b80h2s2m9zpnah85xyg27ba26jixnz"; depends=[crul data_table geoaxe ggplot2 jsonlite lazyeval magrittr oai tibble whisker wicket xml2]; }; + rgbif = derive2 { name="rgbif"; version="1.1.0"; sha256="1rn4gpl5paf8qmk535y1gg81xdnlglm70spvw2y72kvdl5jyrzhl"; depends=[crul data_table geoaxe ggplot2 jsonlite lazyeval magrittr oai tibble whisker wicket xml2]; }; rgcvpack = derive2 { name="rgcvpack"; version="0.1-4"; sha256="1vlvw9slrra18qaizqk2xglzky0i6z3bsan85x908wrg8drss4h5"; depends=[]; }; - rgdal = derive2 { name="rgdal"; version="1.3-3"; sha256="06dvybwz6rgnqhkc05jgi1j9j0bc8hnwrsz5gs1p3xkbxk9fvr0z"; depends=[sp]; }; + rgdal = derive2 { name="rgdal"; version="1.3-6"; sha256="07yq2bcgjr8my9120v451r567wkxqzh2fqhxmy5iy91aik5bhhxm"; depends=[sp]; }; rgdax = derive2 { name="rgdax"; version="0.6.0"; sha256="0kls1v9i3fhiyfns41nqqyz4spf5449hc624vwdw86sgbc1w30w8"; depends=[digest httr jsonlite RCurl]; }; rgen = derive2 { name="rgen"; version="0.0.1"; sha256="0gl82v09q1ha58wd1014s46wzkx1yf348bc7jkl6s4qdc6c4vsb8"; depends=[]; }; rgenoud = derive2 { name="rgenoud"; version="5.8-2.0"; sha256="0ffjw8kqmi0zkbskyw3h38a8iapv7hdi9819x5w9a5gmdmm4yv0h"; depends=[]; }; rgeoapi = derive2 { name="rgeoapi"; version="1.1.0"; sha256="0k8p1l0vrgx0bifbc2i9gxxwih513vbqhjh7fiifyfq3r74i4j7k"; depends=[httr magrittr rjson]; }; rgeolocate = derive2 { name="rgeolocate"; version="1.0.1"; sha256="1v9kd71wpxna1war0rbp91pc5wdqlganmj2c2fc5m5176dnxd2v3"; depends=[httr Rcpp]; }; - rgeopat2 = derive2 { name="rgeopat2"; version="0.2.5"; sha256="1zdjnbdxj6yfmb5dl4ajlcklgh0iw17ji3arl0wf9j61pw45kk17"; depends=[readr sf stringr]; }; - rgeos = derive2 { name="rgeos"; version="0.3-28"; sha256="1dfbphf5g4ggd109j7qh4cycxgslppnja8d4ibwajkfgd3f6iq0q"; depends=[sp]; }; + rgeopat2 = derive2 { name="rgeopat2"; version="0.2.6"; sha256="04r8q3mig7sp38f3m9g20xlb0h046c04hhrzg4n06b5wkn7298s5"; depends=[readr sf stringr]; }; + rgeos = derive2 { name="rgeos"; version="0.4-1"; sha256="1zash6cfq6wlk1gn30al9gvb5im1kgl2yw2isrc06nnd4cxjaswd"; depends=[sp]; }; rgexf = derive2 { name="rgexf"; version="0.15.3"; sha256="0iw1vk32ad623aasf6f8hl0qkj59f1dsc2riwqc775zvs5w7k2if"; depends=[igraph Rook XML]; }; - rggobi = derive2 { name="rggobi"; version="2.1.21"; sha256="0zi4rhggngm0y8dsjxqlr2mmfc5wzi7l1qcp5gin4bjlbyf8yb3z"; depends=[RGtk2]; }; + rggobi = derive2 { name="rggobi"; version="2.1.22"; sha256="1g7k4xais9xkjlbvrkadr5d6c5rw4jp9c0gljhm71pa1fc9fcqff"; depends=[RGtk2]; }; rgho = derive2 { name="rgho"; version="1.0.1"; sha256="0jkfmyn3i50vsqciy96wd2fpik6yfg0sz6rrhwb04jv1dmyz2nfa"; depends=[curl dplyr httr jsonlite lazyeval magrittr memoise readr tibble tidyr]; }; rgl = derive2 { name="rgl"; version="0.99.16"; sha256="0q8sg8fr0140ilssqhscaxkjc29w1rpp6f4k50amw3zzs9g58ak9"; depends=[crosstalk htmltools htmlwidgets jsonlite knitr magrittr manipulateWidget shiny]; }; rglobi = derive2 { name="rglobi"; version="0.2.14"; sha256="09f4v98m68ssnf1n0ijsrzawpri3jhv4bz7gzzzpijb75mkb0zwz"; depends=[RCurl rjson]; }; rglwidget = derive2 { name="rglwidget"; version="0.2.1"; sha256="0siqxn3gyl98i84p0yha821b4rdrp2i0942mkx819wnf7qwrpqcv"; depends=[rgl]; }; + rgoogleslides = derive2 { name="rgoogleslides"; version="0.3.1"; sha256="06i1ljrib0ap87bxlbpnvx5fr05pwzcmza48gbicvg7fwhz9hs05"; depends=[assertthat httr jsonlite R6]; }; rgr = derive2 { name="rgr"; version="1.1.15"; sha256="1mrnmbh2crhkwdi37q59hx76afvkhgzgaacg3688q7jp23d58z6x"; depends=[fastICA MASS]; }; - rgrass7 = derive2 { name="rgrass7"; version="0.1-10"; sha256="0w5vy8163xlfmdrpyp00x25wwq4jnaspzggpvj160azigndsc1kr"; depends=[sp XML]; }; + rgrass7 = derive2 { name="rgrass7"; version="0.1-12"; sha256="1gsy45j6nq4i6lbr4gyhgmnc9l8g6qxbhsqby9r59d6xz49b2xlv"; depends=[sp XML]; }; + rgsp = derive2 { name="rgsp"; version="0.2.0"; sha256="1fk0k479srfr0f4a5abyzcrzwy9hr1v5xf0jgs36fbim9bh7njlc"; depends=[dplyr magrittr tibble]; }; rgw = derive2 { name="rgw"; version="0.1.0"; sha256="12f7bsfg24cld9y47jyqxswgc1bk4adbhhdpycapinbcfhyzc91p"; depends=[]; }; rhandsontable = derive2 { name="rhandsontable"; version="0.3.6"; sha256="1n631vffbfi8mgbcjgav1209ryj88igb17h73xvjdmglh5f0s6dz"; depends=[htmlwidgets jsonlite magrittr]; }; + rhierbaps = derive2 { name="rhierbaps"; version="1.1.0"; sha256="0c18xa6ikgs1j1xn1f9q3angqki7iwzfnq1kzdcgk0rvxkcn1rir"; depends=[ape ggplot2 LambertW matrixStats purrr]; }; + rhli = derive2 { name="rhli"; version="0.0.2"; sha256="1mb6bizqkg7zd8nc5a81fw7d0y0vcv6zh6y28k9vikqmc5l1n21q"; depends=[]; }; + rhmc = derive2 { name="rhmc"; version="1.0.0"; sha256="1m79f1hx404y0k8lk3n6jnzhr6wwrk83xiym68sq1zvj0wjqiqmw"; depends=[]; }; rhmmer = derive2 { name="rhmmer"; version="0.1.0"; sha256="0875b29i8rl9iypxp7vw514avq0ac4abdlfq3861cdd3kgycw8jh"; depends=[dplyr magrittr readr rlang tidyr]; }; rhnerm = derive2 { name="rhnerm"; version="1.1"; sha256="1fkh2pr4kzvqvagdyjlyab7p591s913104gyq05q170gmvlpmiww"; depends=[]; }; - rhoR = derive2 { name="rhoR"; version="1.1.0.0"; sha256="00djh16s144a9cl2z8zm3za1bsnpzd3i5b9nyqad10xlkgll36li"; depends=[]; }; - rhosp = derive2 { name="rhosp"; version="1.07"; sha256="09wq96micv9wpr3sx8ir7frkanpy3zi3mwn6rbixw2kxvn5wkkfn"; depends=[]; }; + rhoR = derive2 { name="rhoR"; version="1.2.0.0"; sha256="04v4cb811d1px7k0afa1x4ixkj8q8syr1rhqgf6j801nqn0dvq8v"; depends=[]; }; + rhosp = derive2 { name="rhosp"; version="1.10"; sha256="1k0rb4fchjlzinky6ysdvyk0xjsx5986aqwn3yc6s7m3v7y9wb9m"; depends=[]; }; rhub = derive2 { name="rhub"; version="1.0.2"; sha256="18aq28q4vggbp19l9wcw3dylnyv7sd26wg0i5w8jrva5cq1v2n5j"; depends=[assertthat callr clisymbols crayon desc httr jsonlite parsedate prettyunits R6 rappdirs rcmdcheck rematch whoami withr]; }; rhymer = derive2 { name="rhymer"; version="1.0.0"; sha256="1k15sd5q6a1ijayl585vc54d1zs4nyrxsfck9bn4nlfdiwc5arwf"; depends=[httr jsonlite]; }; ri = derive2 { name="ri"; version="0.9"; sha256="00y01n9cx95bjhdpnh7vi0xd5p6al3sxbjszbyxafn7m9mygmnhv"; depends=[]; }; ri2 = derive2 { name="ri2"; version="0.1.1"; sha256="01iyk9cfs6v7jd1z962vrcdb3bfab5pcq9abkb21yqi82f9w97jf"; depends=[estimatr ggplot2 pbapply randomizr]; }; riceware = derive2 { name="riceware"; version="0.4"; sha256="0pky0bwf10qcdgg9fgysafr35xbmnr9q0jbh56fawj99nbyj3m70"; depends=[random]; }; rich = derive2 { name="rich"; version="1.0.1"; sha256="0kasr9gb85qhngfayqy3fvrsr0a066krwxsx21nsxcnss0mrqygr"; depends=[boot vegan]; }; - ridge = derive2 { name="ridge"; version="2.2"; sha256="01yldzzlqg0xqha31l3py62lyq7fw5xfsbmz6ifzff24gqsf029x"; depends=[]; }; + ridge = derive2 { name="ridge"; version="2.3"; sha256="15m9klxcxj33s8wkxyamc4awzarg2ncahgaz5cg5m926g8haz9c8"; depends=[]; }; ridigbio = derive2 { name="ridigbio"; version="0.3.5"; sha256="0526nscxynl3857zybpms1wr3230qby29kxglm919pcdvpjb5kz5"; depends=[httr jsonlite plyr]; }; ridittools = derive2 { name="ridittools"; version="0.1"; sha256="1m9xbwxb277l4cd85qxmpw66gyavpwamgwr8kyf8vqarzfbwiilr"; depends=[]; }; riem = derive2 { name="riem"; version="0.1.1"; sha256="0lwhsxb4pm26kb65hs8pa63bsbrgy0zchqm4i6pq9f2r9h8vsm1m"; depends=[httr jsonlite lubridate tibble]; }; rif = derive2 { name="rif"; version="0.2.0"; sha256="0vk3dmg3qzw3i27wbpfih66rx8sdxq033l7h59h3hy960av4hawh"; depends=[crul data_table jsonlite tibble]; }; + rifle = derive2 { name="rifle"; version="1.0"; sha256="1r0cfj3vzndgiarl9sb38zmpnpm4p8v9l5cm9c1m6g2q9kvpgpbs"; depends=[MASS]; }; riingo = derive2 { name="riingo"; version="0.1.0"; sha256="1lkg0xmy3mhx99ywbvkmnkj6i61r5x75g4fnnwj6vdyslvwf3s5x"; depends=[crayon glue httr jsonlite purrr rlang tibble]; }; rijkspalette = derive2 { name="rijkspalette"; version="1.0.0"; sha256="15yn4sp4p4gcm94clyrijp5mxiz2xcslsq2a8x5x2la1l91kf70i"; depends=[crayon curl imager jsonlite]; }; rinat = derive2 { name="rinat"; version="0.1.5"; sha256="14ql90f8wrxz9nlykbzfpar1yfwh7p71vks7vhhn8ys09wvj30zk"; depends=[ggplot2 httr jsonlite maps plyr]; }; - rindex = derive2 { name="rindex"; version="0.12"; sha256="1k9zihvrp955c4lh70zjlsssviy2app8w6mv5ln4nawackbz0six"; depends=[regtest]; }; + rindex = derive2 { name="rindex"; version="0.12.1"; sha256="0q86dvgmrgm94l05inapm7kbgzlmm1xh3x8plvir43rx6gq0am4h"; depends=[regtest]; }; ring = derive2 { name="ring"; version="1.0.0"; sha256="03sbgxwzms20gp0hkm5s0dihqkx3qf6bw0jrays7jjzrrwzl5657"; depends=[R6]; }; rintrojs = derive2 { name="rintrojs"; version="0.2.0"; sha256="0qdry88f6ci5g6k0i8mycm9k5ibnmb9zjppjvqqaflw3g3nsnli2"; depends=[jsonlite shiny]; }; rio = derive2 { name="rio"; version="0.5.10"; sha256="158xg3vj0glk3fslwi6fywwmfym2b6kn3fdmjligdfy5lf68khix"; depends=[curl data_table foreign haven openxlsx readxl tibble]; }; rioja = derive2 { name="rioja"; version="0.9-15.1"; sha256="18fyqcykg12mf4ap0a2la30656xq32immqz11ddmrfrb0vpd2h7h"; depends=[mgcv vegan]; }; ripa = derive2 { name="ripa"; version="2.0-2"; sha256="0n1gaga0d4bb9qdlm7gksa1nwi4y28kbgwr3icwqgihf1bfb9m81"; depends=[Rcpp]; }; + rise = derive2 { name="rise"; version="1.0.4"; sha256="12r7mbaxp9pjypbpjxlsbqg7spw80gjgm2w0lsvgvclffc50a6ni"; depends=[dplyr ggplot2]; }; riskR = derive2 { name="riskR"; version="1.1"; sha256="1qadfyb07idfw0bs006kb3917rzda83di6jmsr22941gv78z1wyv"; depends=[]; }; - riskRegression = derive2 { name="riskRegression"; version="2018.04.21"; sha256="0jyk5pdgr8wqyfxzwbmanqp7ff0fkw3nlz7dx19rqxji1lnj74qa"; depends=[abind cmprsk data_table doParallel foreach ggplot2 lava plotrix prodlim Rcpp RcppArmadillo rms survival timereg]; }; + riskRegression = derive2 { name="riskRegression"; version="2018.10.03"; sha256="1j0q0a9rkh9gmcidl6kwlmiiwn24cxg9yrx0i72py1b2765kqwk2"; depends=[abind cmprsk data_table doParallel foreach ggplot2 lava plotrix prodlim ranger Rcpp RcppArmadillo rms survival timereg]; }; riskSimul = derive2 { name="riskSimul"; version="0.1"; sha256="0s2a1mn6g11m96gqscb916caj2aykcs3rkacpqcdnlyzryk1gsnb"; depends=[Runuran]; }; risksetROC = derive2 { name="risksetROC"; version="1.0.4"; sha256="1fh0jf8v536qzf1v3awx3f73wykzicli4r54yg1z926ccqb4h80l"; depends=[MASS survival]; }; riskyr = derive2 { name="riskyr"; version="0.1.0"; sha256="1s6yrij5d1vhvzc7nnajjnjmxnhrs0r1psppcvwb0qg3ff181y22"; depends=[diagram vcd]; }; - rite = derive2 { name="rite"; version="0.3.4"; sha256="196ashcfj5p52qpnpnrkg7vxq87v7vhf1d7z40mk134gmxk2784j"; depends=[knitr markdown RCurl tcltk2]; }; ritis = derive2 { name="ritis"; version="0.7.2"; sha256="1bn7nfgg9f2y19fp747k96r9kmnrfsqib81a9rzbwv4b97ymg31s"; depends=[crul data_table jsonlite solrium tibble]; }; riv = derive2 { name="riv"; version="2.0-5"; sha256="0n19jlrs12iysq45xyi3zvghkircg0ww5vbsfpnqkw5b22zsv30s"; depends=[MASS quantreg rrcov]; }; riverdist = derive2 { name="riverdist"; version="0.15.0"; sha256="145mvqnhv12dcvss54wdycgb3wwk95phl4kx5z0jnh3kmm1zsdl4"; depends=[rgdal sp]; }; @@ -10602,10 +11066,10 @@ in with self; { rivervis = derive2 { name="rivervis"; version="0.46.0"; sha256="19jsl5g46jcbc0kg47bsif1wrw9z9brgvwdcxqjc89shnx3hzzfv"; depends=[]; }; rivr = derive2 { name="rivr"; version="1.2"; sha256="0ankpfixggwdv17ba8i5iln0zzmngqrhvh3dg8lis9kqg6wa89yr"; depends=[Rcpp]; }; rjade = derive2 { name="rjade"; version="0.1"; sha256="0f1jljj6m1almz0na984n0g314y0rl6a0mx04rbrpipgfgz1h37c"; depends=[V8]; }; - rjags = derive2 { name="rjags"; version="4-6"; sha256="1bc9bzq31liawg3nzwfczf75vgg56fnqjw0997xvlic4ghgbn96g"; depends=[coda]; }; + rjags = derive2 { name="rjags"; version="4-8"; sha256="17xmjksj69f9wk4x71jxk4cgiqhaf2fj6bjm0mgzp4qln5x84a8m"; depends=[coda]; }; rjazz = derive2 { name="rjazz"; version="0.1.7"; sha256="0wmqlpgcr98dvapfmdcph5mdv202rzzsvb06iy5sqvpizpg7pbsz"; depends=[RCurl]; }; rje = derive2 { name="rje"; version="1.9"; sha256="1dyd34z6lb0p6zmyax5dpzflgc9a4saka33mvdfcxi5pj0rnygaz"; depends=[]; }; - rjmcmc = derive2 { name="rjmcmc"; version="0.4.1"; sha256="0ww94zdrxdyznpsfxy5fr65w1qjxxr5zignj4bw4291694vfazw1"; depends=[coda madness mvtnorm]; }; + rjmcmc = derive2 { name="rjmcmc"; version="0.4.3"; sha256="0y2bcfkczlmfnkwmpxa8b65jmfp4pv071wsijv7x4pis28v3mvlr"; depends=[coda madness mvtnorm]; }; rjson = derive2 { name="rjson"; version="0.2.20"; sha256="0v1zvdd3svnavklh7y5xbwrrkbvx6053r4c5hgnk7hz7bqg7qa1s"; depends=[]; }; rjsonapi = derive2 { name="rjsonapi"; version="0.1.0"; sha256="0qshll0y8b6lbfrqmp69w9kc9hgfrz94dk68nddshk9ilg14lx4d"; depends=[crul jsonlite plumber R6]; }; rjstat = derive2 { name="rjstat"; version="0.3.0"; sha256="0r772p0a0x6g96k6r26vb6vjxa68mzjslwg71r0wysa9kqhvypm4"; depends=[checkmate jsonlite]; }; @@ -10614,47 +11078,51 @@ in with self; { rknn = derive2 { name="rknn"; version="1.2-1"; sha256="1x9r01314q0wgqwqzd7d13ycjzb4jzghzd3whgjvm2rsmnabai95"; depends=[gmp]; }; rkt = derive2 { name="rkt"; version="1.5"; sha256="1rgf7dnk4d1b46rns2mb2s1ilxq7hqrh057vrrl00324r4h8bs1k"; depends=[]; }; rkvo = derive2 { name="rkvo"; version="0.1"; sha256="0ci8jqf9nc8hb063nckxdnp0nlyr4ghby356lxm00anw44jlmw8v"; depends=[Rcpp]; }; - rlang = derive2 { name="rlang"; version="0.2.1"; sha256="0ghg66vyri8nck4p6kl1nh47qdppbmxvjiyms69nhvipphk4ifpj"; depends=[]; }; - rlas = derive2 { name="rlas"; version="1.2.4"; sha256="12siq75a4dwyfypyrz8550wj6xjjwfs99kxaglx39c8wc0z64wmy"; depends=[data_table Rcpp uuid]; }; + rlang = derive2 { name="rlang"; version="0.3.0.1"; sha256="0j7kp6h25wbkvpzr7dpc0zgdpjiwsjjlgprj3mv7bgfalfq1si99"; depends=[]; }; + rlas = derive2 { name="rlas"; version="1.2.9"; sha256="025hh6fv2kpgi7jvgmjdmh26smhpfaxisj1gq5jcc6xl02jxhpp0"; depends=[BH data_table Rcpp rgeos sf sp uuid]; }; rld = derive2 { name="rld"; version="1.0"; sha256="1glv4q25z14hcwifwg623h77p4awpsn3nk843pnph4sb3p5qbmn3"; depends=[emdbook MASS survival]; }; rleafmap = derive2 { name="rleafmap"; version="0.2"; sha256="1i2qczipg7lr6fl35lcl896r54jia7libxx83darrfzc1hd9sdcq"; depends=[knitr raster sp]; }; rlecuyer = derive2 { name="rlecuyer"; version="0.3-4"; sha256="0d5mcdzn6f5nhwzs165a24z36d0b8gd0cyfyzffvr6p96h8qydy7"; depends=[]; }; rlfsm = derive2 { name="rlfsm"; version="0.2.0"; sha256="08fdllzk5q77fz6ii83vbmz8dnfwwr3ixs11ia2l1vrm1gdj9gf7"; depends=[doParallel elliptic foreach ggplot2 plyr Rdpack reshape2 stabledist]; }; rlist = derive2 { name="rlist"; version="0.4.6.1"; sha256="08awy2p7rykc272wvvya4ddszbr7b7s7qv4wr3hs8ylr4jqlh0dv"; depends=[data_table jsonlite XML yaml]; }; rlm = derive2 { name="rlm"; version="1.2"; sha256="18y735z05k9pms6iv1739qg3q12w099qhs42icxhqs5gcdhz92fm"; depends=[]; }; + rlmDataDriven = derive2 { name="rlmDataDriven"; version="0.1.0"; sha256="1nfa7ivvrmvw91n77dhx128xxhgv031dzvc8cqb7mzz48lwa225n"; depends=[MASS]; }; rlme = derive2 { name="rlme"; version="0.5"; sha256="0p26mw4g12l279lh80vqcjs3pvjr759ap2m622490k1i2ralxzif"; depends=[magic MASS mgcv nlme quantreg Rcpp robustbase stringr]; }; rlo = derive2 { name="rlo"; version="0.3.2"; sha256="0abq42dhapzmh6hvmildbn8zya29c6p1aqbv8avc03g014dwbrd0"; depends=[PythonInR]; }; - rly = derive2 { name="rly"; version="1.6.1"; sha256="13l1ya0f8mbpwainzs1rbl9zjhf3wxrcfkf0xnj9wybs34k9qzxj"; depends=[futile_logger R6]; }; + rly = derive2 { name="rly"; version="1.6.2"; sha256="1bb55g3rip524dccaxvahjxsi2cimxqvzc897pxplv3bb10pm0r2"; depends=[futile_logger R6]; }; rma_exact = derive2 { name="rma.exact"; version="0.1.0"; sha256="1igs92la79akyqj84ah23lpcay7i33k7zgzcwm7sii782fhirivx"; depends=[abind metafor]; }; rmaf = derive2 { name="rmaf"; version="3.0.1"; sha256="0w247mamwgibr5576p5c2lzaiz2lv2c25n7gw9q99s7rc4bps7j7"; depends=[]; }; - rmake = derive2 { name="rmake"; version="1.0.0"; sha256="1qvbyd68p37nsqrm77w18znsa6m629qzyd7sl8w98p654pqmjhdw"; depends=[assertthat pryr rmarkdown]; }; - rmapshaper = derive2 { name="rmapshaper"; version="0.4.0"; sha256="0a911f6q9czni6zpijp63rngnil7jkbcy9f7jz55jr225fgm6g6z"; depends=[geojsonio geojsonlint jsonlite readr sf sp V8]; }; - rmapzen = derive2 { name="rmapzen"; version="0.3.5"; sha256="0n549y6j056cl7c7pdcn9pixhvs8vpwqg50m380pchbxhxnfjvbq"; depends=[assertthat digest dplyr geojsonio httr jsonlite maps maptools purrr rgdal sf sp tibble tidyr]; }; + rmake = derive2 { name="rmake"; version="1.1.0"; sha256="00qlki2vps505nxzmfykf1iyq4b0y20nb75hbfcj63ap46z7zk3c"; depends=[assertthat pryr rmarkdown visNetwork]; }; + rmapshaper = derive2 { name="rmapshaper"; version="0.4.1"; sha256="0kd8hppn4d3z527s3kqz0mll7qjy0pbxbif46dfqx3rci6m62a68"; depends=[geojsonio geojsonlint jsonlite readr sf sp V8]; }; + rmapzen = derive2 { name="rmapzen"; version="0.4.1"; sha256="1vql1cy38c4kv8pyl81877s587kq4l9sx9nslbgk3l41wvyyvphk"; depends=[assertthat digest dplyr geojsonio httr jsonlite maps maptools purrr rgdal sf sp tibble tidyr]; }; rmarkdown = derive2 { name="rmarkdown"; version="1.10"; sha256="0mh2f3k98w7pgz0ri34149s4kx5y0kfm27nwq64k0qwxd16hwd9r"; depends=[base64enc evaluate htmltools jsonlite knitr mime rprojroot stringr tinytex yaml]; }; rmatio = derive2 { name="rmatio"; version="0.12.0"; sha256="1cw7j44rgjgbw2xln7lh29ln53lwfadr8rx0sffkjwc7lbh1r6wa"; depends=[Matrix]; }; - rmcfs = derive2 { name="rmcfs"; version="1.2.11"; sha256="0pzkxhgn4qcynv0rqbisld7hkpmx8aarxwc165bpipw2z11krdqj"; depends=[dplyr ggplot2 igraph reshape2 rJava yaml]; }; + rmcfs = derive2 { name="rmcfs"; version="1.2.15"; sha256="0qz8b6z1rslsay0m94y013wychajq850bffv6kg2m0jlf4m16320"; depends=[dplyr ggplot2 igraph reshape2 rJava yaml]; }; rmcorr = derive2 { name="rmcorr"; version="0.3.0"; sha256="1p05ln653yrd02wmn8wfzawiw6a924d8an0568fcbgl1pdna43b1"; depends=[psych RColorBrewer]; }; rmdHelpers = derive2 { name="rmdHelpers"; version="1.2"; sha256="1ahzbs8z7wvh1dwbq1kq8wrjrknxi2gck63k70gj0swjvgk0ih5r"; depends=[dplyr knitr]; }; - rmda = derive2 { name="rmda"; version="1.5"; sha256="13119x23xi912s7wl2p2a24msbczgv75x37p2jsr5w0n4l2k01wi"; depends=[caret MASS pander reshape]; }; + rmda = derive2 { name="rmda"; version="1.6"; sha256="1m7j79jwii9la47w34ka3yl1n7nql8pfn32if0aycn4yw5sy8dmc"; depends=[caret MASS pander reshape]; }; rmdformats = derive2 { name="rmdformats"; version="0.3.3"; sha256="06nyrdhy26mvgfb1bnlbd8hslybpc01a30a40wwlc3ay7yp0nzrj"; depends=[bookdown htmltools knitr questionr rmarkdown]; }; rmdshower = derive2 { name="rmdshower"; version="2.1.1"; sha256="1sjpi5ils31adii51gaa8ly7x93l9ganp6in8rsln6si4jc2ppg9"; depends=[rmarkdown]; }; rmeta = derive2 { name="rmeta"; version="3.0"; sha256="0vkbnxp579v8zmcv1isdbzj5swpr6fq17zwparxcvzswjc2x9ydr"; depends=[]; }; + rmetalog = derive2 { name="rmetalog"; version="1.0.0"; sha256="1ndw8drzhf74sjx31zfhhx9q1l6pdn4yx2i8l7klp38d5bsc27xm"; depends=[ggplot2 lpSolve]; }; rmetasim = derive2 { name="rmetasim"; version="3.1.7"; sha256="0sz4mdprdi6sgkfwfdvh2hr9nxiwq17sw0vggq3cvs7lzb0i6m9r"; depends=[ade4 adegenet gtools pegas]; }; - rmgarch = derive2 { name="rmgarch"; version="1.3-0"; sha256="0brqjhplvzl0bgsi6x057rb2cg5x372i746dhddr013p1mx0rlcx"; depends=[Bessel ff MASS Matrix pcaPP Rcpp RcppArmadillo Rsolnp rugarch shape spd xts zoo]; }; + rmgarch = derive2 { name="rmgarch"; version="1.3-5"; sha256="1c9rbd56ssa8msw8s181bn3sjyxchai8q63vchdw5g8kqi5v4l0z"; depends=[Bessel corpcor ff MASS Matrix pcaPP Rcpp RcppArmadillo Rsolnp rugarch shape spd xts zoo]; }; + rmi = derive2 { name="rmi"; version="0.1.1"; sha256="1y0395l9lhskdrk3x9ps2dmv0sznsba0n6a9fmma33dc9dhywgf9"; depends=[BH Rcpp RcppArmadillo]; }; rminer = derive2 { name="rminer"; version="1.4.2"; sha256="1hjgcawjrwsf0nv2hlznr1cvpm445yyxc6cq28k2yzyivk74si34"; depends=[adabag Cubist e1071 glmnet kernlab kknn lattice MASS mda nnet party plotrix pls randomForest rpart xgboost]; }; rmonad = derive2 { name="rmonad"; version="0.5.0"; sha256="0m7hhmn87rfh49hxrjlcxcq6q36niyxlh3w2frld68jkbks71jn5"; depends=[digest glue igraph magrittr pryr]; }; - rmpw = derive2 { name="rmpw"; version="0.0.3"; sha256="1iidiq0pz88wgh155hfy8mw0cwwwcl77zshcjrbw11zpx6p8qy94"; depends=[gtools MASS]; }; + rmpw = derive2 { name="rmpw"; version="0.0.4"; sha256="1a49rvdwvmccv4gfir48fw0b9jyrpc2q9zfyk5j9b7nxsx6x7abl"; depends=[gtools MASS]; }; rms = derive2 { name="rms"; version="5.1-2"; sha256="01wjxlqfz6l1bdsvxqq0lsbps0k86hx3ayb6fl2n2hxccvsfxkzi"; depends=[ggplot2 Hmisc htmlTable htmltools lattice multcomp nlme polspline quantreg rpart SparseM survival]; }; rms_gof = derive2 { name="rms.gof"; version="1.0"; sha256="1n0h3nrp11f2x70mfjxpk2f3g4vwjaf4476pjjwy49smxxlxwz82"; depends=[]; }; rmsfact = derive2 { name="rmsfact"; version="0.0.3"; sha256="05s23rfs9prr2ia3h4h9y614xhv91lbgppgf3mrrssxkwz220kd5"; depends=[]; }; rmsfuns = derive2 { name="rmsfuns"; version="0.0.0.2"; sha256="0by2d6l25lf5vidxbkcxghpxycffyldzzbxcw6h4rm86zmkkv1m0"; depends=[magrittr purrr readr tidyverse xts zoo]; }; rmumps = derive2 { name="rmumps"; version="5.1.2-4"; sha256="1qdpvyxwb18dapa8xqj8kjjmrnrqixkn29qn6q4cnwdwi1zcbdx6"; depends=[Rcpp]; }; rmutil = derive2 { name="rmutil"; version="1.1.1"; sha256="0yyzypkz6jjqvhafg6ipml8hrhr0w9l6j2vnmf0gdy90xj78mgag"; depends=[]; }; - rmweather = derive2 { name="rmweather"; version="0.1.1"; sha256="0p9fdvkdyicbyngsg53vf56fbc3q7yxs2m7iisd1hpaz09gazqlm"; depends=[dplyr ggplot2 lubridate magrittr pdp purrr ranger stringr strucchange testthat tibble viridis]; }; + rmweather = derive2 { name="rmweather"; version="0.1.2"; sha256="1w78qp4irgl2v3hcfmdk3c4yzbaf12lb2whf8nxpj1lcajkpcvq4"; depends=[dplyr ggplot2 lubridate magrittr pdp purrr ranger stringr strucchange tibble viridis]; }; + rmytarget = derive2 { name="rmytarget"; version="1.1"; sha256="1gjmp0mk91f15sswmi8fhkdr7j3zrl49k02m0jmhhp51g4wazxim"; depends=[dplyr httr jsonlite lubridate stringr]; }; rnaseqWrapper = derive2 { name="rnaseqWrapper"; version="1.0-1"; sha256="1fa3hmwrpccf09dlpginl31lcxpj5ypxspa0mlraynlfl5jrivch"; depends=[ecodist gplots gtools]; }; rnaturalearth = derive2 { name="rnaturalearth"; version="0.1.0"; sha256="193b31a7n9jhc607mhwxbpx5gr0fpj3qasm9dbi6kcc7vac3ilgm"; depends=[sf sp]; }; rnaturalearthdata = derive2 { name="rnaturalearthdata"; version="0.1.0"; sha256="1z32j5lz2lb8xgpkr73majw22k0b49iazj6jjc7j4w9k4zxxa102"; depends=[sp]; }; - rncl = derive2 { name="rncl"; version="0.8.2"; sha256="17inkk6ajdn1x6g253k2yjyivcryjwn903cd369h1bxlr80amqc0"; depends=[progress Rcpp]; }; + rncl = derive2 { name="rncl"; version="0.8.3"; sha256="03c8sizm32rdilbvf67gsw81w7i623pajn9blrrkq8rq8j3zdbns"; depends=[progress Rcpp]; }; rneos = derive2 { name="rneos"; version="0.3-2"; sha256="0m5mmhwnrk9ifv91s5ngmlvqqd7bw1n7glzkgk5i72cw0siiwmh0"; depends=[RCurl XML]; }; rnetcarto = derive2 { name="rnetcarto"; version="0.2.4"; sha256="0fk5rym6zp049bl1f7bkl2231mjh3pgnxn0nhvmzpsah08rh4rr6"; depends=[]; }; rngSetSeed = derive2 { name="rngSetSeed"; version="0.3-2"; sha256="00mqjjkhbnvxqkf1kz16gipsf98q62vmhx9v8140qs7c4ljbhc3a"; depends=[]; }; @@ -10666,17 +11134,18 @@ in with self; { rnpn = derive2 { name="rnpn"; version="0.1.0"; sha256="10xx8fxgdknv71ks42xxvf38xsmjy6s87y67wi21673v0n07fxb5"; depends=[data_table httr jsonlite plyr]; }; rnr = derive2 { name="rnr"; version="0.2.1"; sha256="1z9bab3qmq8d79bcvjzldbxlah2w8mqp2ifd0cn1348dafwa0dhi"; depends=[assertthat purrr]; }; rnrfa = derive2 { name="rnrfa"; version="1.4.0"; sha256="007j6a2hihw7h0vhv6aiz7iymzr3lkzmc1dy5f8b22z5n52k4pl3"; depends=[ggmap ggplot2 httr plyr rgdal rjson sp stringr xml2 xts]; }; - roadoi = derive2 { name="roadoi"; version="0.5.1"; sha256="139i0nhvmkx66f1k3vg5b59m0b12zd6abq38ggx15vshzs5q1f5w"; depends=[dplyr httr jsonlite miniUI plyr purrr shiny tibble tidyr]; }; - roahd = derive2 { name="roahd"; version="1.4"; sha256="1snbda40lxb0hyk87alljxclwv3lsjy8qm39ynq8299f1ra1l1lh"; depends=[dplyr magrittr robustbase scales]; }; + roadoi = derive2 { name="roadoi"; version="0.5.2"; sha256="0fzvg75m5yyz2181n2i208525cixyiwclfij47qd3d61qqzlmlp3"; depends=[dplyr httr jsonlite miniUI plyr purrr shiny tibble tidyr]; }; + roahd = derive2 { name="roahd"; version="1.4.1"; sha256="0d89d21s32bsjkm8bdiqrbccd3m9badh87vrsb1laawhl4hr3dn9"; depends=[dplyr magrittr robustbase scales]; }; robCompositions = derive2 { name="robCompositions"; version="2.0.8"; sha256="0i7pjp0ir0n7j5r75ha5avsrqniji1zg7jb93nj9ji3qy286yyxw"; depends=[car cluster cvTools data_table e1071 fpc GGally ggplot2 kernlab MASS mclust pls Rcpp robustbase rrcov sROC VIM zCompositions]; }; robcbi = derive2 { name="robcbi"; version="1.1-2"; sha256="1n8whpnpsm9imiz8l1jxq5x597ydzb2b54jkvrl05hmwh79p97in"; depends=[robeth]; }; robcor = derive2 { name="robcor"; version="0.1-6"; sha256="1hw8simv93jq8a5y79hblhqz157wr8q9dzgm0xhvvv5nkzyqkpzf"; depends=[]; }; - robeth = derive2 { name="robeth"; version="2.7-2"; sha256="049j24hxg7jy80xz615lj7l2mqiybm9zkmwznqpbzrz10s38dj3y"; depends=[]; }; + robeth = derive2 { name="robeth"; version="2.7-4"; sha256="11ghpy88r02844mw99zxl7qzkic8kcl0gw56a4kdyw84r0lyv8rg"; depends=[]; }; robets = derive2 { name="robets"; version="1.4"; sha256="0lvzfpv6569pjysblhadd05sglx0qvyr9wipb9cpiya4a1992n61"; depends=[forecast Rcpp]; }; robfilter = derive2 { name="robfilter"; version="4.1.1"; sha256="1fxqva2khk16sj5ka5zdpaknh2w9n925ys0i4v7ahqvzhnxg6l3b"; depends=[lattice MASS robustbase]; }; robis = derive2 { name="robis"; version="1.0.1"; sha256="11j86nyslh52fxvl6m2vay638n5gqw4akd9d1mkqnpvrvxhm41l5"; depends=[dplyr httr jsonlite leaflet]; }; - robmed = derive2 { name="robmed"; version="0.1.1"; sha256="1716vzci0lmim4n28bc2pjky1shjxqrclgllj3hc4dzf8j22dxbz"; depends=[boot ggplot2]; }; - robotstxt = derive2 { name="robotstxt"; version="0.6.0"; sha256="1xia7xivqnqj0xis6i4qzm3v414ga1m7lmv1piz1b431faq9s1ai"; depends=[future httr magrittr spiderbar stringr]; }; + robmed = derive2 { name="robmed"; version="0.2.0"; sha256="1xrdlmyawzzglv9s41nm470yc6dn21cqqalsnk77vk72dhib7p3k"; depends=[boot ggplot2 robustbase shiny]; }; + robmixglm = derive2 { name="robmixglm"; version="1.0-2"; sha256="0z23frjv9yscw0q33s5vlrmisg9an5hksyhcrgcnlan6x63r91kq"; depends=[actuar bbmle boot fastGHQuad MASS numDeriv Rcpp VGAM]; }; + robotstxt = derive2 { name="robotstxt"; version="0.6.2"; sha256="1c1rhiwkdzvbspwa5km6gp3sjhzmb60ljibb2pf26s931lkr5b6l"; depends=[future future_apply httr magrittr spiderbar stringr]; }; robreg3S = derive2 { name="robreg3S"; version="0.3"; sha256="0rv8qh98wws1f40d1kmysyy9qin0ngsvwq63cnxbwi290wsnrvls"; depends=[GSE MASS robustbase]; }; robumeta = derive2 { name="robumeta"; version="2.0"; sha256="1ynlfxlzh442jd1cf02j0f948m16d536a30gb4bf7208baqri1vg"; depends=[]; }; robust = derive2 { name="robust"; version="0.4-18"; sha256="1b7qh1aff500nd6dh4y2ipmjgdiq8991shflb63pc39vpc0ny6g4"; depends=[fit_models lattice MASS robustbase rrcov]; }; @@ -10686,12 +11155,12 @@ in with self; { robustHD = derive2 { name="robustHD"; version="0.5.1"; sha256="14v6l0appy206zx1jcv7m14r2z9g12dpkm6zxzv756rca2yj8fp5"; depends=[ggplot2 MASS perry Rcpp RcppArmadillo robustbase]; }; robustX = derive2 { name="robustX"; version="1.2-2"; sha256="0pgfq78qd8s40ciqval01bwajy6zfdjms1lbh0b5g0rww6920s6f"; depends=[robustbase]; }; robustarima = derive2 { name="robustarima"; version="0.2.5"; sha256="0mqlp4xmma74rgwb6rihbzs5nillcnddl6smlxmm8lq1wba27jdj"; depends=[splusTimeDate splusTimeSeries]; }; - robustbase = derive2 { name="robustbase"; version="0.93-1"; sha256="10fsc50vqngi2a26fgi99bacq4rb05jg8kqw38r4n4khssw06rk4"; depends=[DEoptimR]; }; + robustbase = derive2 { name="robustbase"; version="0.93-3"; sha256="1nqh1qg1qd1qrxl1w585dqx7ql55qzjny1r4f9hqxpwd7lml07cc"; depends=[DEoptimR]; }; robustfa = derive2 { name="robustfa"; version="1.0-5"; sha256="04nk5ipml54snsmiqf5sbhx490i46gnhs7yibf4wscrsj1bh2mqy"; depends=[rrcov]; }; robustgam = derive2 { name="robustgam"; version="0.1.7"; sha256="0s1z7jylj757g91najbyi1aiqnssd207jfm9yhias746540qp3kw"; depends=[mgcv Rcpp RcppArmadillo robustbase]; }; robustlmm = derive2 { name="robustlmm"; version="2.2-1"; sha256="0xh77jrhjybrbcfzvfzywj8nanqyfgn93rhd1bixw4snz7l1n97x"; depends=[cubature fastGHQuad ggplot2 lattice lme4 Matrix nlme Rcpp RcppEigen robustbase xtable]; }; robustloggamma = derive2 { name="robustloggamma"; version="1.0-2"; sha256="1cifyasrik010zs8jsz0kzzmwm3qmc0y7h2dahg2ibpwxfcqfcpq"; depends=[numDeriv RobustAFT robustbase survival]; }; - robustrank = derive2 { name="robustrank"; version="2017.12-2"; sha256="0lcjn77lsdfbcby89hfcz2h049v2fndw7rankdcdgnl6lw2bdpvr"; depends=[kyotil]; }; + robustrank = derive2 { name="robustrank"; version="2018.10-1"; sha256="0fggn4kv56rvjb84lf18q140flcc6n90bqj59g5zpf8q9l7pqy9z"; depends=[kyotil]; }; robustrao = derive2 { name="robustrao"; version="1.0-3"; sha256="0gcxxizsg380blrv55vl9f3az8gnr274c6idi0pimhh5c26h7ma6"; depends=[doParallel foreach gmp igraph iterpc quadprog]; }; robustreg = derive2 { name="robustreg"; version="0.1-10"; sha256="1zwfgmla6wna48vq5hbz7c7fvmb29y949790w2j6x8pkjzr781sz"; depends=[Matrix Rcpp RcppArmadillo]; }; robustsae = derive2 { name="robustsae"; version="0.1.0"; sha256="0fi1fpqnfj6vkmidlr90kqbn1bxxxqb5qpqqrz9rrimlsvrc4ddl"; depends=[coda lattice MCMCpack mvtnorm pscl]; }; @@ -10699,16 +11168,19 @@ in with self; { rocNIT = derive2 { name="rocNIT"; version="1.0"; sha256="18vxyh1wcq6dv62xf2dyl4226cd00n4hlbaqnynl9j5gnrmmsvi1"; depends=[]; }; rocc = derive2 { name="rocc"; version="1.2"; sha256="00yxbbphhwkg4sj2h7pd9vw86yavl711nk8yylwmjd3qv39qjml0"; depends=[ROCR]; }; roccv = derive2 { name="roccv"; version="1.1"; sha256="13pwrc31w279l7j58wdz24p8j9jdh53rsavj1mymj92jpm52nfzl"; depends=[glmnet pROC]; }; - rockchalk = derive2 { name="rockchalk"; version="1.8.111"; sha256="0x82mmsvy41cw1chbrxwjj35fwimb3iv9lrlhxsslgix62xlskvx"; depends=[car lme4 MASS]; }; - rococo = derive2 { name="rococo"; version="1.1.5"; sha256="062pj62haf0xw74p6c1dd20ipcxka8nn0mxsq490d22kqwm4vf5a"; depends=[Rcpp]; }; + rockchalk = derive2 { name="rockchalk"; version="1.8.117"; sha256="0xy665iypp6c3whzk5qj3n3f69mm23z08cxdgxnvyrnwp5zznqg8"; depends=[carData lme4 MASS]; }; + rococo = derive2 { name="rococo"; version="1.1.7"; sha256="1fp3kk5j9kc0vyr50rlbsxjc9p3qz5137sifxsbd297p7zj1fcs2"; depends=[Rcpp]; }; + rocsvm_path = derive2 { name="rocsvm.path"; version="0.1.0"; sha256="1pd59bzcz96sxpp725pqa7pjh2gdrfapbilp4wccjkf5290zw56v"; depends=[quadprog svmpath]; }; rodd = derive2 { name="rodd"; version="0.2-1"; sha256="01zrkw4lr21vxk2grfc37iyrcipfdcj5m0i7gnxsvs435y9fqagd"; depends=[Matrix matrixcalc numDeriv quadprog rootSolve]; }; rodeo = derive2 { name="rodeo"; version="0.7.4"; sha256="16yzj12m9wvcrqxc33rpbyzbq019swi5jxnbda9crfwjdvafaa0d"; depends=[deSolve R6]; }; rodham = derive2 { name="rodham"; version="0.1.1"; sha256="15mrlx7azvwkwjgfplvs5fhk2nwlg9pay2l99q327p8hx87jr8ra"; depends=[jsonlite plyr splitstackshape stringr tibble]; }; - roll = derive2 { name="roll"; version="1.0.7"; sha256="059n1pl7692grzv4pmnj8s6cs2zi98lr1s5zi9pxg5vpw7r6h2v9"; depends=[Rcpp RcppArmadillo RcppParallel]; }; - rollRegres = derive2 { name="rollRegres"; version="0.1.0"; sha256="09vb06j8yyxw7k7dmni8s90wnvdk5l5x09gr76cvp4rjkx8jjlpj"; depends=[checkmate Rcpp RcppArmadillo]; }; + roll = derive2 { name="roll"; version="1.1.1"; sha256="146x0sfalwxykrj0m08kmrjhihdfnss97hk6x76zd46ji305zk9v"; depends=[Rcpp RcppArmadillo RcppParallel]; }; + rollRegres = derive2 { name="rollRegres"; version="0.1.1"; sha256="1mbwx1rpb5sj6kzsagf3mg7kz11naqqn5fpvnpdvmv7mcp92wj7x"; depends=[checkmate Rcpp RcppArmadillo]; }; rollbar = derive2 { name="rollbar"; version="0.1.0"; sha256="1q2ym0vkgbdnibxmwx0bp9c20g3bm8fzwwgs3j4bxg1ydg3gnkj4"; depends=[httr]; }; rollmatch = derive2 { name="rollmatch"; version="1.0.1"; sha256="1bxd31s30jji97m93z4w4hdxdrfyp947dyzhjwmm13zc59mpfnvs"; depends=[dplyr magrittr]; }; rollply = derive2 { name="rollply"; version="0.5.0"; sha256="01rh4x9352ixdhrqdysapqx5ynksknyf8n230b340pxwaz2d7xhc"; depends=[plyr Rcpp stringr]; }; + roloc = derive2 { name="roloc"; version="0.1-1"; sha256="0xynj12gp010c23f6ll9p343vwgxwa22s771p1w2pi65cj2ixhas"; depends=[colorspace]; }; + rolocISCCNBS = derive2 { name="rolocISCCNBS"; version="0.1"; sha256="100jh5m2c1zp5wg3wd4y2i47dzx1j0g6lfwyqmwk4bz99yzzz5am"; depends=[colorspace roloc]; }; rolr = derive2 { name="rolr"; version="1.0.0"; sha256="04nm4q0mlr4w6jb0frykzlyknfn3gn02ysqr5ll5jch6wawichy2"; depends=[survival]; }; rolypoly = derive2 { name="rolypoly"; version="0.1.0"; sha256="11nf7in6n03675l11ynl4rp20rlzy7jli3m518s4sqqxdm8f8ci7"; depends=[data_table dplyr foreach ggplot2 glmnet MASS Matrix matrixcalc]; }; rootSolve = derive2 { name="rootSolve"; version="1.7"; sha256="08ic6ggcc5dw4nv9xsqkm3vnvswmxyhnqnv1rdjv1h2gy1ivpcq8"; depends=[]; }; @@ -10717,8 +11189,10 @@ in with self; { rope = derive2 { name="rope"; version="1.0"; sha256="06qp6h8cjnz0yacm4r39k99hrw74iyq16h5mqfcki7sf3zqbfm7r"; depends=[]; }; ropenaq = derive2 { name="ropenaq"; version="0.2.6"; sha256="065p4c8l4bqxy00clbjhad8hqw4gg2h2c00b06n2fa5n70z0akgq"; depends=[crul dplyr jsonlite lazyeval lubridate tidyr]; }; ropensecretsapi = derive2 { name="ropensecretsapi"; version="1.0.1"; sha256="0d4yl0h4am3blskdnzk119hk374c3vx0cg99r20w07yh8jfafrw7"; depends=[RCurl RJSONIO]; }; + roperators = derive2 { name="roperators"; version="1.1.0"; sha256="0klmk1jmh1iysgf345qa6qyjmn1pkz072ha254k90flprgicg7c6"; depends=[]; }; ropercenter = derive2 { name="ropercenter"; version="0.2.0"; sha256="1ghn666jhwmkxwrr8pc398nhzvg4y4097pa19m4b08d9mkg9iqlj"; depends=[dplyr foreign haven httr readr rvest stringr tibble tidyr xml2]; }; - roprov = derive2 { name="roprov"; version="0.1.0"; sha256="0g9jg9j91v705kygs4yx1y6s0cx5krr6kbg3jlgcsda9ldjmj7fy"; depends=[CodeDepends fastdigest igraph]; }; + roprov = derive2 { name="roprov"; version="0.1.1"; sha256="1b03y61h5j5cirk43hf1z520g47iq9jnkh150qshpk52pd4iq1n0"; depends=[CodeDepends fastdigest igraph]; }; + roptim = derive2 { name="roptim"; version="0.1.1"; sha256="0r06msb8d3i01inzkyc02zy4zg63sww6jb5cdhzzi5iz768lczc1"; depends=[Rcpp RcppArmadillo]; }; rorcid = derive2 { name="rorcid"; version="0.4.0"; sha256="1diz14b5jzs9i4khyykq58cbgz87qraivv9lhq5nrrrfi2gryl9r"; depends=[crul data_table fauxpas httr jsonlite tibble xml2]; }; rorutadis = derive2 { name="rorutadis"; version="0.4.2"; sha256="13a7xj4qw1nd8xgrqhrki3php960lgy9gy38sg4kpvs4j2rwijzc"; depends=[ggplot2 gridExtra hitandrun Rglpk]; }; rosetteApi = derive2 { name="rosetteApi"; version="1.9.0"; sha256="0pnrfc0dcbh5r3qwfwyb0q063bzwpw4ga60965y5qyxz64cyx74r"; depends=[httr jsonlite]; }; @@ -10727,22 +11201,23 @@ in with self; { rosqp = derive2 { name="rosqp"; version="0.1.0"; sha256="0975g7p75bq238g7lr200svsqm9i11z7l331r0igm5ycahljrlsm"; depends=[Matrix R6 Rcpp]; }; rotationForest = derive2 { name="rotationForest"; version="0.1.3"; sha256="1z2wk3mcs5hrahsxralidbc0dd8gxdbwjpr2f71g4g3isfx1ic8d"; depends=[rpart]; }; rotations = derive2 { name="rotations"; version="1.5"; sha256="1zksh6hyxdkm0lvvrld6dgkmhszn6wsjrjzr2xbn3af3gsvsydaa"; depends=[ggplot2 Rcpp RcppArmadillo rgl sphereplot]; }; - rotl = derive2 { name="rotl"; version="3.0.4"; sha256="1zc4418gxpd65n60lspsdm15v7apkv6wkf9jqqs152z079ppdrhx"; depends=[ape assertthat httr jsonlite rentrez rncl]; }; + rotl = derive2 { name="rotl"; version="3.0.5"; sha256="18iq91r7g79nv6qmkb6kp5vlc3jkymfsdzs83il5rd63cvj6gp46"; depends=[ape assertthat httr jsonlite rentrez rncl]; }; roughrf = derive2 { name="roughrf"; version="1.0"; sha256="0nwdynqfb9yzjvi1lykgdkch3b4g09aj8vbd6sf5pyx473s066y4"; depends=[mice nnet randomForest]; }; + roundhouse = derive2 { name="roundhouse"; version="0.0.1"; sha256="142dw9ky6fyp5n8zf5lymx083gi56q6wxj4jm0m8cjb0khiqw2lq"; depends=[httr jsonlite]; }; routr = derive2 { name="routr"; version="0.3.0"; sha256="1mjf1vwrh1k1kjl1kcgqs29zb8h9m05630czsjkz7li3pmvy9mrv"; depends=[assertthat digest httpuv R6 reqres stringi uuid]; }; rowr = derive2 { name="rowr"; version="1.1.3"; sha256="1f93c2yni956flwnxgphn340pc7p6yagr5xnmhinjgk9kvsd07yh"; depends=[]; }; - roxygen2 = derive2 { name="roxygen2"; version="6.0.1"; sha256="0xpzziminf225kjwhyl51kgkzhplyzhk5farhf5s822krl2xqbfj"; depends=[brew commonmark desc digest R6 Rcpp stringi stringr xml2]; }; + roxygen2 = derive2 { name="roxygen2"; version="6.1.0"; sha256="0ji9k4s1bvfbl8wimfqj1lqr33h1claaz30vb5pgksxyg77j5xaa"; depends=[brew commonmark desc digest pkgload purrr R6 Rcpp stringi stringr xml2]; }; royston = derive2 { name="royston"; version="1.2"; sha256="1rywc89qzx0hldbq10201bjdhz60pq2gmgd9b9j52mza3w4canjz"; depends=[moments nortest]; }; rpanel = derive2 { name="rpanel"; version="1.1-4"; sha256="0yzasb4k5jcx3wfsll9k9alyrwc0l1x6pk91nj7cqrdiapw8j519"; depends=[]; }; rpart = derive2 { name="rpart"; version="4.1-13"; sha256="0k29qx3k3pj5sgrpg0p47yd8i811rmdakaw57bigpq1449asc4cf"; depends=[]; }; - rpart_plot = derive2 { name="rpart.plot"; version="2.2.0"; sha256="1sh45ixd22nl7lxry82h74k4d5y2yvrs9g2ydqqv5jwkk7hmki11"; depends=[rpart]; }; + rpart_plot = derive2 { name="rpart.plot"; version="3.0.4"; sha256="0b4y1adn0gnx9igi0nghjp2bf5pa2d5fqz00ra505ljdwj8d0lgx"; depends=[rpart]; }; rpart_utils = derive2 { name="rpart.utils"; version="0.5"; sha256="00ahvmly6cdf7qhhcic0dbjlljqq8kbhx15rc7vrkd3hzd55c0im"; depends=[rpart]; }; rpartScore = derive2 { name="rpartScore"; version="1.0-1"; sha256="15zamlzbf6avir8zfw88531zg5c0a6sc5r9v5cy9h08ypf34xf4y"; depends=[rpart]; }; rpartitions = derive2 { name="rpartitions"; version="0.1"; sha256="1gklsi4pqhk16xp9s49n1lr9ldm1vx61pvphjqsqkzrlxwcpx3j8"; depends=[hash]; }; rpatrec = derive2 { name="rpatrec"; version="1.0.1"; sha256="0zj461frf6n5s97zq7r52q0blsn2xq2759impgz6v4pr87gmq0si"; depends=[np]; }; rpca = derive2 { name="rpca"; version="0.2.3"; sha256="135q3g8jmn9rwamrc9ss45cnbfyw8kxcbrf0kinw8asz70fihj9z"; depends=[]; }; rpcdsearch = derive2 { name="rpcdsearch"; version="1.0"; sha256="17g3x15qgv2hamlj451sb88i83n8svw5vnmjpijp5cnn5d1jx0d6"; depends=[assertthat combinat dplyr stringr xlsx]; }; - rpdo = derive2 { name="rpdo"; version="0.2.3"; sha256="150kd9pvfr7msrh55vsqcj8lv994izlvhxf4g5n1qbzdcaqsdjzp"; depends=[checkr]; }; + rpdo = derive2 { name="rpdo"; version="0.2.4"; sha256="153xj2fw6ddqxcdriq825nigf6zdakgx5ik2yr4w4bayam1qa5fq"; depends=[checkr]; }; rpf = derive2 { name="rpf"; version="0.59"; sha256="06gibjngl27mmvmni6ncz5qa4nlbxlna57f13607a9r739146378"; depends=[mvtnorm RcppEigen]; }; rpg = derive2 { name="rpg"; version="1.6"; sha256="1vn5cswrkmw98z1dr0f0yjkz3n8kwvjb4zknqg81fzqsagfc89yx"; depends=[getPass RApiSerialize Rcpp uuid]; }; rpgm = derive2 { name="rpgm"; version="1.1.2"; sha256="0pbja877gb3mn7m78lfdl217dm7qsrblq6gwrjh5wbv1nd532hvz"; depends=[]; }; @@ -10750,13 +11225,13 @@ in with self; { rpicosat = derive2 { name="rpicosat"; version="1.0.1"; sha256="1zj2d6jairmvya91vhv9kpkf34zmzl9vlha5yvfjj0j0apmqc0li"; depends=[]; }; rpinterest = derive2 { name="rpinterest"; version="0.3.1"; sha256="0kkf73byhgzqxw85wda3nh7qsq81pc035vi6z3fhnvb9ssszwakc"; depends=[httr magrittr rjson]; }; rpivotTable = derive2 { name="rpivotTable"; version="0.3.0"; sha256="0ndhsw4nnz6wf0v8dh4sz8867m01jjkzw6aq7f490z1ypa3d9fv5"; depends=[htmlwidgets]; }; - rplos = derive2 { name="rplos"; version="0.8.0"; sha256="0l38zllzklsy6q2l2r0v2x8wcsldnxjhilcsq5ykl1k35gbva19y"; depends=[crul dplyr ggplot2 jsonlite lubridate plyr reshape2 solrium whisker]; }; - rplotengine = derive2 { name="rplotengine"; version="1.0-6"; sha256="1x9lf5h6cmjyi5xyvmk2ii2dwkwmjqbg0m1fhfabay0flqc7qdm0"; depends=[xtable]; }; + rplos = derive2 { name="rplos"; version="0.8.4"; sha256="1hx1r9ag62a2mv8zqag0i1f10k5rfdygjhqinql4cgzgrdi7y3h7"; depends=[crul dplyr ggplot2 jsonlite lubridate plyr reshape2 solrium whisker]; }; + rplotengine = derive2 { name="rplotengine"; version="1.0-7"; sha256="1bbciq84l0h6g4qajlcqg3v66g2rspflv6k7x5h5qzwlcb4p4dps"; depends=[xtable]; }; rpms = derive2 { name="rpms"; version="0.3.0"; sha256="0kdxjn2aij83ax0g1ipdb7qrvpqn67vhs3z54ihj1kbx4i8pzs9g"; depends=[Rcpp RcppArmadillo]; }; rpn = derive2 { name="rpn"; version="1.0"; sha256="0wk8y4yk6wqzbq5bqv6zncfp9az5vn8xgwh426pk3bxm3v4xi16i"; depends=[BBmisc checkmate]; }; rpnf = derive2 { name="rpnf"; version="1.0.5"; sha256="07byg0ym4d2cr6fp74z379jhsaw4c0xrwf622dvhwa4frn4anl60"; depends=[]; }; rportfolios = derive2 { name="rportfolios"; version="1.0-1"; sha256="00xxh85jpl0rw8fv84i7zmq0psc92pq7hharnr4szbmhgz8kbc35"; depends=[truncdist]; }; - rpostgis = derive2 { name="rpostgis"; version="1.4.0"; sha256="0rgi7ax2n2fln12501zshwaz23nns9qk4vy1ylnaqb4bg0x30gn4"; depends=[DBI raster rgeos RPostgreSQL sp]; }; + rpostgis = derive2 { name="rpostgis"; version="1.4.1"; sha256="15s5k5grg2va5dkszpbrk0kgbmrq5xhg7jm37q90m3ydbgln2ys2"; depends=[DBI raster rgeos RPostgreSQL sp]; }; rpostgisLT = derive2 { name="rpostgisLT"; version="0.6.0"; sha256="1adwpkfndm6n3s9xcx8zrwnj6bmgvq4nzs072fnl5i6kjy6ngjm6"; depends=[adehabitatLT DBI htmltools leaflet lubridate magrittr mapview rpostgis RPostgreSQL sf shiny shinyWidgets sp]; }; rppo = derive2 { name="rppo"; version="1.0"; sha256="0agqys52l8bb3mc3bpawym12phl5r1ymalfvgrq5w6n78lpzcxls"; depends=[httr jsonlite plyr readr]; }; rpql = derive2 { name="rpql"; version="0.6"; sha256="0kbxhh0pacgh5d490665a5k00qh93rv5k7v3g73vrgn6lc085a54"; depends=[gamlss_dist lme4 MASS Matrix mvtnorm Rcpp RcppArmadillo]; }; @@ -10764,14 +11239,14 @@ in with self; { rprime = derive2 { name="rprime"; version="0.1.0"; sha256="1v6n1qi0i7x8xgizbyvp1mnwc316lsan4rvam44fgjj45fcd79gd"; depends=[assertthat plyr stringi stringr]; }; rprintf = derive2 { name="rprintf"; version="0.2.1"; sha256="0rwqpln0igxb4m6d6jyp7h3shfb8sbp0kj7cgkffjp88hn9qm4h3"; depends=[stringi]; }; rprojroot = derive2 { name="rprojroot"; version="1.3-2"; sha256="12r3fdxmi2pmwn6ic3rhg0b20ll5z420m0d8fziv1n21961namnz"; depends=[backports]; }; - rpsftm = derive2 { name="rpsftm"; version="1.2.2"; sha256="0xfw2rc8k9nnwzmzf803w5aarhm09hvi8ry5gi21d9n8fxsj1q97"; depends=[ggplot2 rootSolve survival]; }; + rpsftm = derive2 { name="rpsftm"; version="1.2.3"; sha256="1l0674jsi5ngazmbl13wm73xwxyqy4z6k7p0j46j6wcv84ljj7ss"; depends=[ggplot2 rootSolve survival]; }; rpst = derive2 { name="rpst"; version="1.0.0"; sha256="10cbgj67lqgh5bawwa0nwj9kfl3jg4vdm121kc61q199v8dw7nrz"; depends=[plotrix survival]; }; rpsychi = derive2 { name="rpsychi"; version="0.8"; sha256="1h40kbqvvwwjkz5hrclj6j22zhav3yyfbbhqahs1whwjkksnam4w"; depends=[gtools]; }; rptR = derive2 { name="rptR"; version="0.9.21"; sha256="0wqh9d372s2222qm5w0wx77l2sj7zvdnl7zvxcn5wfs3cz84fj15"; depends=[lme4 pbapply]; }; rpubchem = derive2 { name="rpubchem"; version="1.5.10"; sha256="06j9ir65ykky5hdbyv74fnddwqd39jxvr6jig0kjqisc75k4spjz"; depends=[base64enc car data_table fingerprint iterators itertools RCurl RJSONIO stringr XML]; }; rqPen = derive2 { name="rqPen"; version="2.0"; sha256="13m21v753njaramgpbhn0lb793b6946crv5v8vl127w38q0z3wyd"; depends=[quantreg regpro]; }; - rqdatatable = derive2 { name="rqdatatable"; version="0.1.1"; sha256="14m0sfl46kkzwv4pmgl8wc4sxb9b14lbx3m3c7r6d3iv6jjmaaj2"; depends=[data_table rquery wrapr]; }; - rquery = derive2 { name="rquery"; version="0.5.0"; sha256="1ssf7mxj8dy78v9a9bmaxppp2cygpcqndir40vavl6fm9v34s0nq"; depends=[wrapr]; }; + rqdatatable = derive2 { name="rqdatatable"; version="1.1.1"; sha256="1634llj4ykkn85ijj978k9rxclp7ff687vsvr9i2v5xppg7sbr5h"; depends=[data_table rquery wrapr]; }; + rquery = derive2 { name="rquery"; version="1.1.1"; sha256="0w7fs5mvw8dzaiw7xl75a2rl99nhfay5mwl12smakd1zpsn0v8n3"; depends=[wrapr]; }; rr = derive2 { name="rr"; version="1.4"; sha256="1c2h6ibjfwrjfqh1if3c90pdh0g2rf3p71j4p9w23xbbrx2l80pl"; depends=[arm coda magic MASS]; }; rrBLUP = derive2 { name="rrBLUP"; version="4.6"; sha256="1bw4pjj9hm9ik5bvvklnlkykhlqm6k7pbkma1iwc3kbg8shpbd18"; depends=[]; }; rrBlupMethod6 = derive2 { name="rrBlupMethod6"; version="1.3"; sha256="1qwv954mhry46ff2ax48xcmnasygi5alv8d413g3qbk2da6i0d8l"; depends=[]; }; @@ -10782,7 +11257,7 @@ in with self; { rrd = derive2 { name="rrd"; version="0.2.1"; sha256="1n4590h3xzja7j8fzay4b8rp98wnilg2znnkbw4ffk9fdac2wr5l"; depends=[assertthat tibble]; }; rrecsys = derive2 { name="rrecsys"; version="0.9.7.3"; sha256="034p7ncnzlkniicl5nd58m9wjy7mc00f027zpg5das226svhfywf"; depends=[ggplot2 knitr MASS Rcpp registry]; }; rredis = derive2 { name="rredis"; version="1.7.0"; sha256="0wzamwpmx20did8xj8x9dllri2ps83viyqjic18ari7i4h1bpixv"; depends=[]; }; - rredlist = derive2 { name="rredlist"; version="0.4.0"; sha256="0j2hab26zs9dyg9fggza7yffbvwvnmrk5frbfs2ys8h3hg2x6ncy"; depends=[crul jsonlite]; }; + rredlist = derive2 { name="rredlist"; version="0.5.0"; sha256="12dqilcwyxad5yjz8gh29ycwj2rbm1g0hxfsqkl7zsjaz5lbcka0"; depends=[crul jsonlite]; }; rrefine = derive2 { name="rrefine"; version="1.0"; sha256="1lh3vddrp5k9bhz5spv93w0qm9z5lskpdgxfksys0l3275hzx1lm"; depends=[httr readr rlist]; }; rreg = derive2 { name="rreg"; version="0.2.1"; sha256="05c2yj58zn43zkmqp4iyblsixsq76hsjkchffl5rkqynvgxi0qzi"; depends=[directlabels ggplot2]; }; rrepast = derive2 { name="rrepast"; version="0.7.0"; sha256="1s596sk993aam5rsb4as2y3n5wcgjlnb25b29l59z0xks1v04mnc"; depends=[digest doParallel foreach ggplot2 gridExtra lhs rJava sensitivity xlsx]; }; @@ -10792,44 +11267,45 @@ in with self; { rroad = derive2 { name="rroad"; version="0.0.5"; sha256="09q5r9wq3vm5wy5aigx9wffv7m0njlp3sma1djm6cp7hhwgss0nj"; depends=[]; }; rrpack = derive2 { name="rrpack"; version="0.1-7"; sha256="0svrw2ik59hjyfb0kag4nv8ilcaz7irmkp7ndbxxn0jg7dacb411"; depends=[ggplot2 glmnet lassoshooting MASS Rcpp RcppArmadillo]; }; rrr = derive2 { name="rrr"; version="1.0.0"; sha256="0sv6k70mv325yjm8yjy4dw8cqc0xc071iiv94fk1l1yfz0n67prz"; depends=[dplyr GGally ggplot2 magrittr MASS plotly Rcpp]; }; - rsMove = derive2 { name="rsMove"; version="0.2.4"; sha256="01iag63vskm68zjgq5qmgiimhmxcmp0mq6qarzsr3jlgmxix6kqs"; depends=[caret gdalUtils ggplot2 igraph lattice lubridate pryr randomForest raster RCurl rgdal sp spatialEco]; }; + rrtable = derive2 { name="rrtable"; version="0.1.0"; sha256="1rvqb32fr63dkm5kz291pxzli8yi10k76v0lm1qdn28cx1l6ff3y"; depends=[devEMF editData flextable ggplot2 magrittr moonBook officer purrr readr rmarkdown rvg shiny stringr ztable]; }; + rsMove = derive2 { name="rsMove"; version="0.2.6"; sha256="15mr2i0fv1k230ncfkbdk564rydsq9zy9bgwackbg9zlix8x7874"; depends=[caret gdalUtils ggplot2 igraph lattice lubridate plyr pryr randomForest raster RCurl rgdal sp spatialEco]; }; rsae = derive2 { name="rsae"; version="0.1-5"; sha256="1f3ry3jwa6vg2vq2npx2pzzvfwadz8m48hjrqjk860nfjrymwgx5"; depends=[]; }; rsample = derive2 { name="rsample"; version="0.0.2"; sha256="10lmpy4ca045j2fxbz5xzl1w9242dkp6sc8hhrk0fxs0dkfb7amf"; depends=[broom dplyr purrr recipes rlang tibble tidyr]; }; rsatscan = derive2 { name="rsatscan"; version="0.3.9200"; sha256="00vgby24jknq8nl7rnqcwg7gawcxhwq8b7m98vjx2hkqx39n4g21"; depends=[foreign]; }; - rscala = derive2 { name="rscala"; version="3.0.2"; sha256="0gbi2q63pbl8izyq8wjrjn9d0746ylak8fp7zsjzw56gjpak79q3"; depends=[]; }; + rscala = derive2 { name="rscala"; version="3.2.3"; sha256="11p626ys62xgvs0pd5hsnywnhvgm5m082s6laqg823az8ybs9wyp"; depends=[]; }; rscimark = derive2 { name="rscimark"; version="1.0"; sha256="1jsjz4d5bnxb90qqzz42m4nyvm8d8w8bs0m1r5g2n78zmckqb8vy"; depends=[checkmate]; }; rsconnect = derive2 { name="rsconnect"; version="0.8.8"; sha256="019phwamg2irb0ak9y0sn25ihi0a9sfdpa02dz9x0bhpcg55x0li"; depends=[digest packrat PKI RCurl RJSONIO rstudioapi yaml]; }; - rscopus = derive2 { name="rscopus"; version="0.5.11"; sha256="1h0lj68znfy1jc2b7qbxj0cq8y2blhwz2p82cfn321yhca0s818c"; depends=[dplyr httr plyr tidyr]; }; - rscorecard = derive2 { name="rscorecard"; version="0.7.1"; sha256="1j7v383gcb13bi6d1v59pkx6d9g4yichyyh5ads9w82qq6v31xnw"; depends=[dplyr httr jsonlite lazyeval magrittr]; }; + rscopus = derive2 { name="rscopus"; version="0.6.1"; sha256="1nhpgslwhsz6zpk82fsyqk4qrsw9avq1jv2wbz5ahbfkgd5rshwa"; depends=[dplyr httr plyr tidyr]; }; + rscorecard = derive2 { name="rscorecard"; version="0.10.0"; sha256="1sls4fnr02kwc1d9myd92am1yzj6mi1pxs694n74amyl4m58kqg9"; depends=[dplyr httr jsonlite lazyeval magrittr tidyselect]; }; rsdepth = derive2 { name="rsdepth"; version="0.1-5"; sha256="064jbb6gnx0sm41w3sbi6mvsbzsfkjqfici6frk8sfm9ybvm591j"; depends=[]; }; - rsdmx = derive2 { name="rsdmx"; version="0.5-12"; sha256="0qzbn3d6vkvn8qnjymmjbqgcffglnl5qm2zm4v6694xwcc1msvwx"; depends=[plyr RCurl XML]; }; + rsdmx = derive2 { name="rsdmx"; version="0.5-13"; sha256="1lgy5nbrl4frfn805lghyx1gl2h8lkvgk07365jyvb8rzfcl43av"; depends=[plyr RCurl XML]; }; rsed = derive2 { name="rsed"; version="0.1.2"; sha256="1rk7wkidvdn1d39a11cbgglz2dg74bbv3v1ijjdx903kgwg3nnrc"; depends=[Smisc]; }; rseedcalc = derive2 { name="rseedcalc"; version="1.3"; sha256="18zmpjv6g8f7pmvqlp6khxyys9kdnq5x4zxwb6gwybsh4jxrymkp"; depends=[]; }; rsem = derive2 { name="rsem"; version="0.4.6"; sha256="16nsbp4s20396h2in0zymbpmsn24gqlbik0vgv86zhy1yg1rz9ia"; depends=[lavaan MASS]; }; rsgcc = derive2 { name="rsgcc"; version="1.0.6"; sha256="12f8xsg6abmhdgkrrc8sfzmv4i1pycq1g0jfad664d17yciw7rhh"; depends=[biwt cairoDevice fBasics gplots gWidgets gWidgetsRGtk2 minerva parmigene snowfall stringr]; }; rsggm = derive2 { name="rsggm"; version="0.3"; sha256="17yzvd5vs2avp0nzk7x9bi4d7p6n9nv7675qpgfpwkfqp25lax73"; depends=[glasso MASS Matrix QUIC]; }; rsimsum = derive2 { name="rsimsum"; version="0.3.3"; sha256="0h08klkdn84y32xlaafig1jj5ni79j4yx2pp3pg2qfmpimxcm44w"; depends=[checkmate ggplot2]; }; - rsinaica = derive2 { name="rsinaica"; version="0.5.0"; sha256="12jzbay7vm1ziqdjx8i7wkb3f354q95qfayasr3prl16sz80kpp7"; depends=[dplyr httr jsonlite lubridate stringr]; }; + rsinaica = derive2 { name="rsinaica"; version="0.6.0"; sha256="0ygr2mpvmqnv6a71cm93xss8g3pnmb5ax0fb88cjzax993m2l48v"; depends=[dplyr httr jsonlite lubridate stringr]; }; rslp = derive2 { name="rslp"; version="0.1.0"; sha256="06glpdsd309058kxww114j9sshvj6gw9g5sdm4zkmzq3cl91fa6h"; depends=[magrittr plyr stringi stringr]; }; rslurm = derive2 { name="rslurm"; version="0.4.0"; sha256="1ck4ky5d0pf8hnxz1ijbjk0nfyj1hfnhf9la5qrqw2spa09z82ki"; depends=[whisker]; }; - rsm = derive2 { name="rsm"; version="2.9"; sha256="1rj2qdlv44hbv1ipv7hdpssn90ypp6bfc7nqdaf9dak0bd6khwni"; depends=[estimability]; }; - rsnps = derive2 { name="rsnps"; version="0.2.0"; sha256="10g1b2i2mp0b4p78iiy83sz2jwz73xfjkhc6ih4ag2wmbdmwf9pb"; depends=[httr jsonlite plyr stringr XML]; }; + rsm = derive2 { name="rsm"; version="2.10"; sha256="0a6bxrb0qad40lnigqjv2pnwwzcwi1rcmh9gb1a1b00k1n3mnmlc"; depends=[estimability]; }; + rsnps = derive2 { name="rsnps"; version="0.3.0"; sha256="1ym58gqpvn708228pbkq1klvl60a60bwxwm0arzzad3wh1wansxj"; depends=[crul data_table jsonlite plyr stringr XML xml2]; }; rsoi = derive2 { name="rsoi"; version="0.3.0"; sha256="0syl90akbbg50pyhsa4nyq2r4psi2n6qg48a4nxprgz412n8rjbv"; depends=[dplyr lubridate readr]; }; - rsolr = derive2 { name="rsolr"; version="0.0.8"; sha256="1swhg7hnkdphnw0d9jrzn18nk2v5a6ny7n652fh8d0k88a27xx4d"; depends=[BiocGenerics graph RCurl restfulr rjson S4Vectors XML]; }; - rspa = derive2 { name="rspa"; version="0.2.1"; sha256="0m3h25jxfccdqy4gf3cls4wcdpw580yfmb3lvw4ndfva8lj2q6sy"; depends=[lintools validate]; }; - rsparkling = derive2 { name="rsparkling"; version="0.2.4"; sha256="0ykk8lvigi3hb5iz7rxsi3brf4ydg2kxmaks4vk0vrkanyifs7xp"; depends=[h2o sparklyr]; }; - rsq = derive2 { name="rsq"; version="1.0.1"; sha256="1c7604g48rcsbfk66xfwia1jaxlqsjiw19zx9pg51n8d6c0l17zb"; depends=[MASS]; }; + rsolr = derive2 { name="rsolr"; version="0.0.9"; sha256="1mxvzb7wvm1agv35r82pr1hxa3fimixcwf36j98qjlxj9p7valrw"; depends=[BiocGenerics graph RCurl restfulr rjson S4Vectors XML]; }; + rspa = derive2 { name="rspa"; version="0.2.3"; sha256="171bwyxbjx2w8fz87jsbaghqxgmmkaxixhia0kp2y33ns6fc1hy9"; depends=[lintools validate]; }; + rsparkling = derive2 { name="rsparkling"; version="0.2.11"; sha256="150lg0zdpnpcgrh10vh7fr8fmmq6qhvf8pc27fil4rq31k4aazr9"; depends=[h2o sparklyr]; }; + rsq = derive2 { name="rsq"; version="1.1"; sha256="0pvnyf875jybid16mg1y3dmnlrk1vahckhr5zaai1a0k4i6mh4jf"; depends=[MASS]; }; rstack = derive2 { name="rstack"; version="1.0.0"; sha256="19vbfmkd6ymadah1y1w5rn52f4hviddccyc6qj2cv5viqwbwws2z"; depends=[R6]; }; rstackdeque = derive2 { name="rstackdeque"; version="1.1.1"; sha256="0i1qqbfj0yrqbkad8bqc1qlxmyxpn7zycbnq83cdmfbilcmi87ql"; depends=[]; }; - rstan = derive2 { name="rstan"; version="2.17.3"; sha256="10fdasqbdwlisnm7hjmgl5f027ypfhni86d1c5fykb09g1pvkjz3"; depends=[BH ggplot2 gridExtra inline Rcpp RcppEigen StanHeaders]; }; - rstanarm = derive2 { name="rstanarm"; version="2.17.4"; sha256="1azggccxj6k8nrz8xlmsv42h0rvwmqfih8xxqn45v7fy9la006p0"; depends=[bayesplot BH ggplot2 lme4 loo Matrix nlme Rcpp RcppEigen rstan rstantools shinystan StanHeaders survival]; }; + rstan = derive2 { name="rstan"; version="2.18.1"; sha256="01cwm4vrlrrcqmda0dgr23bpav1rbb8xp53n9hl8x70995k4lpcf"; depends=[BH ggplot2 gridExtra inline loo pkgbuild Rcpp RcppEigen StanHeaders]; }; + rstanarm = derive2 { name="rstanarm"; version="2.18.1"; sha256="08md6kjxrq0cpgjj8jq69jxk21lhdf6arav2griz66mgkydg8xkm"; depends=[bayesplot BH ggplot2 lme4 loo Matrix nlme Rcpp RcppEigen rstan rstantools shinystan StanHeaders survival]; }; rstansim = derive2 { name="rstansim"; version="0.1.1"; sha256="09hg4ishzp6q90nrl94h21al0ad0jn7fr8brp8f0xa9cvkwlzjpg"; depends=[doRNG doSNOW foreach loo Rcpp rstan]; }; - rstantools = derive2 { name="rstantools"; version="1.5.0"; sha256="19rzcfiirw539hxs98j33gccwigdpwf3nj1w5jwwzank217wmgg4"; depends=[]; }; + rstantools = derive2 { name="rstantools"; version="1.5.1"; sha256="11dlrz3mj1j9qigh2qff0ixdcfds4ppxd37112yq8bn16b0idasw"; depends=[]; }; rstatscn = derive2 { name="rstatscn"; version="1.1.1"; sha256="0aj4x3lyrldpgh90v90qbxylndacn5ri5yqff3qy53q45ar7yji3"; depends=[httr jsonlite]; }; rstiefel = derive2 { name="rstiefel"; version="0.20"; sha256="1wrl7rc4nrnxjs26l9v36x3mpx33mjijk27nbzidwrhp9gppzz1i"; depends=[]; }; rstpm2 = derive2 { name="rstpm2"; version="1.4.2"; sha256="19cijqx1jblhgwzr0q1p7aaiajnrf5g9l4fw67p69nv4nljcypan"; depends=[bbmle fastGHQuad mgcv numDeriv Rcpp RcppArmadillo survival]; }; rstream = derive2 { name="rstream"; version="1.3.5"; sha256="1wprsnwl63cc4a6j5h18r09wlh32bq5z6hj6r5klp7rkpjchsplp"; depends=[]; }; - rstudioapi = derive2 { name="rstudioapi"; version="0.7"; sha256="133s75q2hr6jg28m1wvs96qrbc9c4vw87migwhkjqb88xxvbqhd5"; depends=[]; }; + rstudioapi = derive2 { name="rstudioapi"; version="0.8"; sha256="0d6r0in13k0rcyr6asanwy0a9dv4lizq6l2w913rr222pq6vrrck"; depends=[]; }; rsubgroup = derive2 { name="rsubgroup"; version="0.6"; sha256="1hz8rnbsl97ch6sjwxdicn2sjyn6cajg2zwmfp03idzpb3ixlk7l"; depends=[foreign rJava]; }; rsunlight = derive2 { name="rsunlight"; version="0.7.0"; sha256="0v2wrgq8fxvkf8sf4z4wi4bbvbskw5wzcplns9imwfmm3y2pabyi"; depends=[crul data_table jsonlite plyr stringr tibble]; }; rsurface = derive2 { name="rsurface"; version="1.1.0"; sha256="1pymbgvr72nqd66wap5wrcizzx2k9bfr6vkxv6dkvjmi8q7jl2gv"; depends=[plotly rsm]; }; @@ -10837,40 +11313,43 @@ in with self; { rsvd = derive2 { name="rsvd"; version="0.9"; sha256="1d71y4r27gpwsaq195yys301va8wdc2bvwxjk6501f7ma2yhl7y9"; depends=[]; }; rsvg = derive2 { name="rsvg"; version="1.3"; sha256="11mccgf6hfskg45wqc114sx3qy2r494y6axdf73z6xwhs1wpm97g"; depends=[]; }; rsyslog = derive2 { name="rsyslog"; version="1.0.1"; sha256="1i33bpv894jk7cixsvn85h1g532zj39f8dfqq8cyzgsav9wba2y4"; depends=[]; }; + rt_test = derive2 { name="rt.test"; version="1.18.7.9"; sha256="0ywkdjvfzmrmmsfkz4jbhwzbzv7wivx80xy8wr92dch1862h6ias"; depends=[]; }; rt3 = derive2 { name="rt3"; version="0.1.2"; sha256="1fqbymkz4csavkxrs26glzrh0kw3qy9x5smgddgda9a1dxh9ljkm"; depends=[]; }; - rtable = derive2 { name="rtable"; version="0.1.5"; sha256="1a9x0qcbp96wg86nbvx25yh5viwvf5sqb41z3cvr5i7br2ji8n5i"; depends=[knitr ReporteRs shiny tidyr xtable]; }; rtape = derive2 { name="rtape"; version="2.2"; sha256="0q7rs7pc1k1kayr734lvh367j5qig2nnq5mgak1wbpimhl7z3wm7"; depends=[]; }; - rtdists = derive2 { name="rtdists"; version="0.8-3"; sha256="1p8j50snlfc4rs7fvzd2ny1i47vy3d6xmik4rhyppvv4kr47nwhm"; depends=[evd gsl msm Rcpp]; }; + rtdists = derive2 { name="rtdists"; version="0.9-0"; sha256="14ccpn67xdsx5fhwiw32z55gldzdcpaparqb1zpls2r233wg0v99"; depends=[evd gsl msm Rcpp]; }; rtematres = derive2 { name="rtematres"; version="0.2"; sha256="1d0vrprvnlk4hl2dbc6px9xn9kx9d1qvlqxd798hzda6qg5wwvf2"; depends=[gdata plyr RCurl XML]; }; rtext = derive2 { name="rtext"; version="0.1.20"; sha256="0455rwfxmpgb4qb925ildqr4km4ndgqjxgvk90x2dhfivgmmn60k"; depends=[digest hellno magrittr R6 Rcpp RSQLite stringb]; }; rtf = derive2 { name="rtf"; version="0.4-13"; sha256="1gwvw98lnym305z9awjaximrmkl4kkki59blbwqs2js42iqcx2m3"; depends=[R_methodsS3 R_oo]; }; rtfbs = derive2 { name="rtfbs"; version="0.3.9"; sha256="02irj6c7nfgp42yb5zdmhbr5pi09xgx0z76d1ccfczjf0r1cyvfz"; depends=[rphast]; }; - rticles = derive2 { name="rticles"; version="0.4.1"; sha256="1f2a60jmlsiga377ihhy8sm9amqn7fd91sd4vx682b97hfh3zn39"; depends=[knitr rmarkdown yaml]; }; - rtide = derive2 { name="rtide"; version="0.0.4"; sha256="0i3mf3818s62mmn315brv2axpwiiz646k5hv8z26z7s4ahxavrc0"; depends=[abind datacheckr lubridate magrittr plyr stringr tibble tidyr]; }; + rticles = derive2 { name="rticles"; version="0.6"; sha256="1rdjk5h9li55j3r7pj7q82z2y4phxqwybr3375dyajymd370gsys"; depends=[knitr rmarkdown tinytex xfun yaml]; }; + rtide = derive2 { name="rtide"; version="0.0.5"; sha256="0ns79xkkl141bbns8zlvx3gf48k4a03qa21pjyhnhgkm9lsihwfc"; depends=[abind checkr lubridate]; }; rtiff = derive2 { name="rtiff"; version="1.4.5"; sha256="0wpjp8qwfiv1yyirf2zj0696zb7m7fpzn953ii8vbmgzhakgr8kw"; depends=[pixmap]; }; - rtika = derive2 { name="rtika"; version="0.1.8"; sha256="1lkcrs3cdfcgy86vbvjfxqs2jxw4imz16s6c3pxhdl8r0byjdndk"; depends=[curl rappdirs sys]; }; + rtika = derive2 { name="rtika"; version="1.1.19"; sha256="0qh6qq3hxhsa2nb3bn468h87k54xjq8f0jj5rixcp95p4krr6wn7"; depends=[curl digest rappdirs sys]; }; rtimes = derive2 { name="rtimes"; version="0.5.0"; sha256="1z8iaxkvd99fnk46vzbw6lax2qayng6s5n1sxn78kvp8py552f61"; depends=[crul data_table dplyr jsonlite tibble]; }; rtimicropem = derive2 { name="rtimicropem"; version="1.3"; sha256="1z7nrmzwdgz7fy2i23rl07jd39sdxqsdmmmkaaxzagj7whd58inj"; depends=[changepoint dplyr ggplot2 knitr lazyeval lubridate pathological R6 rbokeh readr stringr tibble tidyr]; }; rtip = derive2 { name="rtip"; version="1.1.1"; sha256="0lfny8nvgnf90xsmgmr32nzjbw8117m4vw7d0bc3xm4pzpnymjdq"; depends=[boot ggplot2 mvtnorm plyr rootSolve]; }; rtk = derive2 { name="rtk"; version="0.2.5.4"; sha256="1nh757l4ih5pmmh7b84ca1f5wpz9mcksdb0a4rvs2hhgap38ihg9"; depends=[Rcpp]; }; - rtkore = derive2 { name="rtkore"; version="1.5.1"; sha256="03vmgrsil5yrrs3ndgqvfcwv9plcawc8v2y2x9nwcashxg40djn6"; depends=[Rcpp]; }; + rtkore = derive2 { name="rtkore"; version="1.5.5"; sha256="0srk0ih4gbmhb1pl6zf8sjwrkdmgws9cl1397fcqv6l3bc376622"; depends=[inline Rcpp]; }; rtop = derive2 { name="rtop"; version="0.5-14"; sha256="1wwllckginnzisapbklpsizy47db24r83xahq4qsd8zhqvv9yj33"; depends=[gstat sp]; }; rtrek = derive2 { name="rtrek"; version="0.1.0"; sha256="05dzqylvv8rgh0sxl2qa2zvxnmilwmxsa6f99mh6ygcf9pal8jzd"; depends=[dplyr jsonlite magrittr purrr]; }; rtrends = derive2 { name="rtrends"; version="0.1.0"; sha256="04xdggf36m294drb9z8khdjr6fgsg4bwkb4mmbbvqfzjpq4mq4y1"; depends=[dplyr lubridate tidyr]; }; - rtrim = derive2 { name="rtrim"; version="2.0.4"; sha256="1xl3xai768idnfc30hp20cnpq3a07049p7vpkqpdrpla6a8zhvqk"; depends=[]; }; - rts = derive2 { name="rts"; version="1.0-45"; sha256="11gvgj5bqiacsf51sg4dj7jpsjgdj6j26vqc8by15325a4c804ml"; depends=[raster RCurl sp xts zoo]; }; + rtrim = derive2 { name="rtrim"; version="2.0.6"; sha256="18fvi8zbf9dqwi5x0sgy2aay5565ldvqpispqqb5gx2lwb9qra2r"; depends=[]; }; + rts = derive2 { name="rts"; version="1.0-47"; sha256="0xlwg6c49clb1zyfw8s8qhwdbyl0rwx7ljy8j2rq7hjh07541hdx"; depends=[raster RCurl sp xts zoo]; }; + rtsdata = derive2 { name="rtsdata"; version="0.1.1"; sha256="1xh5wsc330x49zcid8hpv9jarbp64dgq10k6lbjjsx1n7dg9qm3z"; depends=[alfred anytime curl data_table mongolite Quandl quantmod xts zoo]; }; rtson = derive2 { name="rtson"; version="1.3"; sha256="1gwvk7nmq9bz90jy1zh7lhr735iw804pmwxykdpaigcsnxk7zx03"; depends=[R6]; }; - rtsplot = derive2 { name="rtsplot"; version="0.1.0"; sha256="1iz7m1r46d1b84fbbkby42ry8plp226gh38krrdgzshfcf2a6856"; depends=[quantmod RColorBrewer TTR xts zoo]; }; - rtweet = derive2 { name="rtweet"; version="0.6.7"; sha256="0blyggy559cginfavmwzli1ibjbh1lbipyyi4bs2h9mvx9iwkl2l"; depends=[httr jsonlite magrittr tibble]; }; + rtsplot = derive2 { name="rtsplot"; version="0.1.1"; sha256="0dkv8pl2937zfpcwyy9ms1ak29nv9mxyb8w6bh2ns8figjp11zmp"; depends=[quantmod RColorBrewer xts zoo]; }; + rtweet = derive2 { name="rtweet"; version="0.6.8"; sha256="0r2lyiy3wa7v7wq72fvckw3bbff9sjy5bqpag766pl1rwfsbphjm"; depends=[httr jsonlite magrittr tibble]; }; rtype = derive2 { name="rtype"; version="0.1-1"; sha256="0wjf359w7gb1nrhbxknzg7qdys0hdn6alv07rd9wm6zynnn1vwxy"; depends=[]; }; - rtypeform = derive2 { name="rtypeform"; version="0.3.3"; sha256="13nqlgi4wwby8ka014ggilnh2m4qr940zbsks27zfd7q56ng7sbq"; depends=[httr jsonlite purrr tibble]; }; + rtypeform = derive2 { name="rtypeform"; version="2.0.0"; sha256="00as49l9plncc25bn93x36hpxnxachsh382ivhq6k9d9gi8424c0"; depends=[dplyr glue httr jsonlite lubridate purrr tibble tidyr]; }; rubias = derive2 { name="rubias"; version="0.1.0"; sha256="0k8f1aaj3zpxqkhzjfl7iyyx7pjssp5lldajjsghw110j75qksh4"; depends=[dplyr ggplot2 gtools magrittr Rcpp readr rlang stringr tibble tidyr]; }; rucm = derive2 { name="rucm"; version="0.6"; sha256="1n6axmxss08f2jf5impvyamyhpbha13lvrk7pplxl0mrrrl5g0n8"; depends=[KFAS]; }; rucrdtw = derive2 { name="rucrdtw"; version="0.1.3"; sha256="0wbh9zbgqf5bk1ix5qry18lhgdqk90pn5xnv401268gldjy4z777"; depends=[Rcpp]; }; rugarch = derive2 { name="rugarch"; version="1.4-0"; sha256="0b0rq88v93945g7pr6xin7wfdm8zl2vw8hxwa2kfak4xnrrprsyy"; depends=[chron expm ks nloptr numDeriv Rcpp RcppArmadillo Rsolnp SkewHyperbolic spd xts zoo]; }; + ruin = derive2 { name="ruin"; version="0.1.1"; sha256="124xs1c2mjfy6z0bp83rwkqw2y73g77xwn3q4yd2xw0v2frnpvpz"; depends=[ggplot2]; }; ruler = derive2 { name="ruler"; version="0.1.3"; sha256="000hnnnz3zccpshpi725f67kbfr3hnpgr48zyz24pbynyz3d7vap"; depends=[dplyr keyholder rlang tidyr]; }; runittotestthat = derive2 { name="runittotestthat"; version="0.0-2"; sha256="15zdcvqkr5ivq6wk6dw8k6diginc6z7mdc18pswim90d99j2g9sm"; depends=[assertive RUnit]; }; runjags = derive2 { name="runjags"; version="2.0.4-2"; sha256="035sxmh0b0m6dwz8qbpsmw2p7ihkx3cxgkhj27i0j6dsjryl3x4p"; depends=[coda lattice]; }; + runner = derive2 { name="runner"; version="0.1.0"; sha256="0gzh8438pvpg5wwirh0hn5s8fnd8cb6y66syndxarr06v9jy1gza"; depends=[Rcpp]; }; rusda = derive2 { name="rusda"; version="1.0.8"; sha256="0xx72jjf1pyixwpnvvgx5n2vc5gl46bam1caav043iqki68wb338"; depends=[foreach httr plyr RCurl stringr taxize testthat XML]; }; rusk = derive2 { name="rusk"; version="0.1.1"; sha256="0a6vbcnfzlfq9fmibiy0cwcfix65qhxq4f7wc7d53riga82s00lk"; depends=[dplyr ggforce ggplot2 reshape2 shiny tidyr]; }; rust = derive2 { name="rust"; version="1.3.5"; sha256="16jrf1nfn3wnkrbzp5bjkqi0q0vpy82ra6f0vs1pyk5hw5jhshg9"; depends=[Rcpp RcppArmadillo spatstat]; }; @@ -10879,15 +11358,17 @@ in with self; { rvHPDT = derive2 { name="rvHPDT"; version="3.0"; sha256="05nrfnyvb8ar7k2bmn227rn20w1yzkp1smwi4sysc00hyjrlyg8s"; depends=[gtools]; }; rvTDT = derive2 { name="rvTDT"; version="1.0"; sha256="09c2fbqnlwkhaxfmgpsdprl0bb447ajk9xl7qdlda201fvxkdc8v"; depends=[CompQuadForm]; }; rvalues = derive2 { name="rvalues"; version="0.6.3"; sha256="1bsdvwcijb75f27c8padjx8663as667axc4skwa6xgv5y423kbd0"; depends=[]; }; - rvcheck = derive2 { name="rvcheck"; version="0.1.0"; sha256="0b3vw1r4aglciwmjqm8dvlizydydwcgnpwkzib2g9k69a355iyi0"; depends=[]; }; + rvcheck = derive2 { name="rvcheck"; version="0.1.1"; sha256="116cs1ih5m55jyp0f5whjvnbn4gpi4550qkbwzw0mq254x2r8vdg"; depends=[rlang]; }; rversions = derive2 { name="rversions"; version="1.0.3"; sha256="0i2gi05nrvknr7g89rbppkswyfcwwd4r9gp75fdfhpah8sgq1l11"; depends=[curl xml2]; }; rvertnet = derive2 { name="rvertnet"; version="0.7.0"; sha256="01z3ij5z21v901hz4l9173r4pa9jz2nl7bx086ka1bxvcy0dgqgj"; depends=[crul dplyr ggplot2 jsonlite maps]; }; rvest = derive2 { name="rvest"; version="0.3.2"; sha256="04mv99z8dixywx96kfy4215g6ib23s7qvd77hcf9pxqxzcvqhvhd"; depends=[httr magrittr selectr xml2]; }; rvg = derive2 { name="rvg"; version="0.1.9"; sha256="0r2amwygazq1sff8fl0k618fxs2d5pxp5ryz7kqyjkcnxfghgnxf"; depends=[gdtools officer Rcpp xml2]; }; rvgtest = derive2 { name="rvgtest"; version="0.7.4"; sha256="1lhha5nh8fk42pckg4ziha8sa6g20m0l4p078pjj51kz0k8929ng"; depends=[]; }; - rvinecopulib = derive2 { name="rvinecopulib"; version="0.2.8.1.0"; sha256="0n92822pgspq17wy52zmvch2ag9fc577y64myzg5b7hz7fqd96mq"; depends=[assertthat BH cctools kde1d lattice Rcpp RcppEigen RcppThread]; }; - rwalkr = derive2 { name="rwalkr"; version="0.3.3"; sha256="03kpv4hvlajm09cqrlihia62pcj1skakx28ci4mgbfgpjy6l4jsl"; depends=[dplyr httr tibble tidyr]; }; + rviewgraph = derive2 { name="rviewgraph"; version="1.2"; sha256="0qw1fdfwg2763a1k1qmryblw5rpagsi5p70rs7fj256zfcjvwrz8"; depends=[rJava]; }; + rvinecopulib = derive2 { name="rvinecopulib"; version="0.3.0.1.1"; sha256="09zs1ckc5c0z4xg6h348v8nig37b400mkwsa0z4hn7rrhjf5i3gf"; depends=[assertthat BH cctools kde1d lattice Rcpp RcppEigen RcppThread wdm]; }; + rwalkr = derive2 { name="rwalkr"; version="0.3.4"; sha256="1zx58l92finzkrivp214hbldkcbpdjgx0k6bwz22spp0lgnzi9mp"; depends=[dplyr httr tibble tidyr]; }; rwars = derive2 { name="rwars"; version="1.0.0"; sha256="0kmwpr6gn3xsf0pqx153vblpjbhc34mzlgyv8xb2nw78nf8znfij"; depends=[httr]; }; + rwavelet = derive2 { name="rwavelet"; version="0.1.0"; sha256="15shy8v659r3qnx32hrq6zn5fwinwg6aiys71f45k0s9jhj973ki"; depends=[dplyr signal]; }; rwc = derive2 { name="rwc"; version="1.11"; sha256="1qhgkbkp4nz0wq5c4x8232xiszpiyzcdklfgvpnx4cbp3bbfdi4g"; depends=[MASS Matrix mvtnorm raster]; }; rwfec = derive2 { name="rwfec"; version="0.2"; sha256="0wmalfms59zi8jdn2s2qbcdckfkifl9vg19hzx4389mm5gk6qsbh"; depends=[Rcpp]; }; rworldmap = derive2 { name="rworldmap"; version="1.3-6"; sha256="1q1h0n9qr0m5pdx10swrh9ddsvdj8kv5nqngrf3lnx9rg9iwivjk"; depends=[fields maptools sp]; }; @@ -10897,9 +11378,11 @@ in with self; { rwunderground = derive2 { name="rwunderground"; version="0.1.8"; sha256="02p26gkicd5v511kb04p1h3wxj57r7j5vr97n3ibywc6ivz7nqxa"; depends=[countrycode dplyr httr lubridate tibble]; }; rxSeq = derive2 { name="rxSeq"; version="0.99.3"; sha256="0g0n2pzbssz61psghjp1vrlspgph4s39x1k1zhcz7ivdn5pjb2nx"; depends=[MASS numDeriv VGAM]; }; rxylib = derive2 { name="rxylib"; version="0.2.1"; sha256="0qfdd7z9as6igc82i8dbvjz03jk8scxz599jw8xm69y5qs5zf104"; depends=[BH Rcpp]; }; + rym = derive2 { name="rym"; version="0.4.0"; sha256="1vxc6nk0d90ggwymdyfwaxzsd91zmd3bspz0chj7iaki8cjbbjdw"; depends=[httr stringr]; }; ryouready = derive2 { name="ryouready"; version="0.4"; sha256="1d9z3paxcrkwsgn5g83x57jwz2iqarks30x0bwg48i5ispw6xbr3"; depends=[car ggplot2 stringr]; }; rysgran = derive2 { name="rysgran"; version="2.1.0"; sha256="1l2mx297iyipap8cw2wcw5gm7jq4076bf4gvgvij4q35vp62m85z"; depends=[lattice soiltexture]; }; - rzmq = derive2 { name="rzmq"; version="0.9.3"; sha256="04rb54gr1wr0nczxnhk5jbk9ar65yn2vs8bsa41i1hfhzjhnsvxb"; depends=[]; }; + rzeit2 = derive2 { name="rzeit2"; version="0.2.0"; sha256="0r74i14bnpw1dp8vzcx8kf87a8v4g3r4wbs4c87s9s4ingvsbl64"; depends=[anytime httr jsonlite openssl rvest stringr xml2]; }; + rzmq = derive2 { name="rzmq"; version="0.9.4"; sha256="1bbkgxqpjmy3ma76cc9kjxhhwi632di4mfarlgxi2g42dmsxmyq3"; depends=[]; }; s2 = derive2 { name="s2"; version="0.4-0"; sha256="1mpivllq3r3kn7msb7qn9h8fr31jl5cvfg1pdq1wi69k4bznd8y0"; depends=[Rcpp]; }; s20x = derive2 { name="s20x"; version="3.1-27"; sha256="021f9l34svx42mnzi080rr44sxz9zjvcnxljakcag02r4hl52pcp"; depends=[]; }; s2dverification = derive2 { name="s2dverification"; version="2.8.0"; sha256="13cjzxrjwahjhdw5q8lpbwgywgswqrcnj7rkff9kraan9lj83bkk"; depends=[abind bigmemory GEOmap geomapdata mapproj maps NbClust ncdf4 plyr SpecsVerification]; }; @@ -10915,9 +11398,9 @@ in with self; { sRDA = derive2 { name="sRDA"; version="1.0.0"; sha256="0g11smn4adm3b79m9w7wzcragxggkf8rrrsgj2yzdhm1d7zzjwbk"; depends=[doParallel elasticnet foreach Matrix mvtnorm]; }; sROC = derive2 { name="sROC"; version="0.1-2"; sha256="0cp6frhk9ndffb454dqp8fzjrla76dbz0mn4y8zz1nbq1jzmz0d3"; depends=[]; }; sSDR = derive2 { name="sSDR"; version="1.2.0"; sha256="1fqsglqzsbzdvcdnwwf7mg6x20zfpw66x63r6avac3w1pz3n7kvx"; depends=[MASS Matrix]; }; - sValues = derive2 { name="sValues"; version="0.1.5"; sha256="0y234nci9pnc10xyiwxllvb5b48ajga2y0k5fv9izlwkbc5wpiaw"; depends=[caTools ggplot2 reshape2]; }; + sValues = derive2 { name="sValues"; version="0.1.6"; sha256="0830f4w6jgpiysk0vz0bxaxwa8m3k94fgj9l3qb42r3jjf9cdn29"; depends=[ggplot2 reshape2]; }; saasCNV = derive2 { name="saasCNV"; version="0.3.4"; sha256="12h5vrl55sb4wmx0hzib5iax8p0q2qzk19h15r0asfkh9l7qz94l"; depends=[DNAcopy RANN]; }; - sabre = derive2 { name="sabre"; version="0.2.0"; sha256="1mcjchw1hw1ry5vkl50jrz4bm82b4fqzhgn2xp2kdzwsgvq61dbm"; depends=[dplyr entropy rlang sf tibble tidyr]; }; + sabre = derive2 { name="sabre"; version="0.2.1"; sha256="0zfw3mb21p48xjjwvz7p5q5ckh1sk17rymkkhln97jjfy5q1zwz8"; depends=[dplyr entropy rlang sf tibble tidyr]; }; sac = derive2 { name="sac"; version="1.0.1"; sha256="1rl5ayhg5y84fw9w3zf43dijjlw9x0g0w2z4haw5xmxfni72ms8w"; depends=[]; }; saccades = derive2 { name="saccades"; version="0.1-1"; sha256="138a6g3hjmcyvflpxx1lhgxnb8svrynplrjnvzij7c4bzkp8zip6"; depends=[zoom]; }; sadists = derive2 { name="sadists"; version="0.2.3"; sha256="17jlzx5h5l1w7riz0rs99w31n6lxnnxwzbzqn2z5r292j2nxvmkw"; depends=[hypergeo orthopolynom PDQutils]; }; @@ -10926,33 +11409,36 @@ in with self; { sae2 = derive2 { name="sae2"; version="0.1-1"; sha256="0fbbh2s0gjhyhypaccnd37b5g2rhyzq7mrm6s0z36ldg1pzi4dd9"; depends=[MASS]; }; saeRobust = derive2 { name="saeRobust"; version="0.2.0"; sha256="1bdfrsm59xwkga0kxl3r5n83mhhkyzj7gplrgx26gyflashyd1zc"; depends=[aoos assertthat ggplot2 magrittr MASS Matrix memoise modules pbapply Rcpp RcppArmadillo spdep]; }; saeSim = derive2 { name="saeSim"; version="0.9.0"; sha256="19l41qpwspccphmgxi20p7f473lxxh8d86b0wyy5jq24phhd8awx"; depends=[dplyr functional ggplot2 MASS parallelMap spdep]; }; + saemix = derive2 { name="saemix"; version="2.2"; sha256="1gp9xww9q3cq9dr6nifp4wlyg9gmamab845py1ag07vnr2gfwx5c"; depends=[]; }; saery = derive2 { name="saery"; version="1.0"; sha256="09x1v627llqbpiwkh1wr0z7gsndfdrjzag2hprhq1adbzh05k47z"; depends=[]; }; safeBinaryRegression = derive2 { name="safeBinaryRegression"; version="0.1-3"; sha256="1g68r6pp5l41rbgyfqgcha1gpsisnl0ybdmdqr4ylr43f61dpgvd"; depends=[lpSolveAPI]; }; - safer = derive2 { name="safer"; version="0.2.0"; sha256="0659xn8jzd5md2mm71p4036ljrfvlhkfshsgidx7l2k9ig532059"; depends=[assertthat base64enc sodium]; }; + safer = derive2 { name="safer"; version="0.2.1"; sha256="1lmhaj9y0hi4ybxfkllxl99vsagcg73sy4kkcmlvn3bs69jky1r9"; depends=[assertthat base64enc sodium]; }; salesforcer = derive2 { name="salesforcer"; version="0.1.2"; sha256="02a4xzwphy5zfkd0qza6cm2n7dpf71bmc6r78gj17w4amrp3k5y5"; depends=[dplyr httr jsonlite lubridate purrr readr XML xml2]; }; + salty = derive2 { name="salty"; version="0.1.0"; sha256="1dxq62yrkv416fy09l03slc7ci6mnwiyvjlsxhbqnj8yjy3kbhr6"; depends=[assertthat purrr stringr]; }; sambia = derive2 { name="sambia"; version="0.1.0"; sha256="15yz5lrjav5bs8m52crg3l43xmi4gf7wydji76p181ssyg43z2ln"; depends=[dplyr e1071 FNN mvtnorm pROC ranger smotefamily]; }; samon = derive2 { name="samon"; version="4.0.0"; sha256="0pvv93ahh0i69ncc3sic9481wd5rv5dfxysxyzkl61ds3yvrr09v"; depends=[]; }; sampSurf = derive2 { name="sampSurf"; version="0.7-4"; sha256="0azs8d1d4cp5vzrlzpn2lbqmbha6rxq109apg6hr2hf7i81g19d7"; depends=[boot lattice latticeExtra raster rasterVis sp]; }; sampleSelection = derive2 { name="sampleSelection"; version="1.2-0"; sha256="1s3p5fvvxkjkm6vjpxi3rw8ncbmyvqpfb0gghcvf2sspdyzam1s2"; depends=[Formula maxLik miscTools mvtnorm systemfit VGAM]; }; - sampler = derive2 { name="sampler"; version="0.2.0"; sha256="00c5blf8gfsj8ksf3jwksg3pkh7m39mk23r8v9lkqcp1y91z5p0i"; depends=[dplyr reshape splitstackshape tidyr]; }; + sampler = derive2 { name="sampler"; version="0.2.2"; sha256="02dk16hywmdrhaqf18dis7canq433wm7pn0haq10h49qav16kj55"; depends=[dplyr purrr reshape tidyr]; }; samplesize = derive2 { name="samplesize"; version="0.2-4"; sha256="0n6z7jmf665lbj3g1mjy87a9fh53z85546bhrkmkgsysb0r9q6iq"; depends=[]; }; - samplesize4surveys = derive2 { name="samplesize4surveys"; version="3.1.2.400"; sha256="16q8pird6ic7001i3gkwqb2rlak9l853bf2m1y9njmdprsjs82yl"; depends=[TeachingSampling timeDate]; }; + samplesize4surveys = derive2 { name="samplesize4surveys"; version="3.6.1.0"; sha256="0qkzhqr67x5rkahbyr5j2nksf0l0jwxsdl19p5gfx7j5kqzlifwq"; depends=[TeachingSampling timeDate]; }; samplesizeCMH = derive2 { name="samplesizeCMH"; version="0.0.0"; sha256="0gdywqmylid4fkz5syzf1wgcan71whhm9gjylmsg4p05hlwvpv1d"; depends=[]; }; samplesizelogisticcasecontrol = derive2 { name="samplesizelogisticcasecontrol"; version="0.0.6"; sha256="1xznql86r6snkkmk9g05jhdam06pr0qmg40mdzasl291nc50v5aa"; depends=[mvtnorm]; }; sampling = derive2 { name="sampling"; version="2.8"; sha256="06pj7dan0mknpsblmlnk7am78qrnwgnql5vvx7vmbfvib7rj6s9m"; depends=[lpSolve MASS]; }; samplingDataCRT = derive2 { name="samplingDataCRT"; version="1.0"; sha256="0ah3fi2sn642c8nicikhjhl1hdsjzshrf1j02swq0jaqggcqjdvk"; depends=[mvtnorm]; }; samplingEstimates = derive2 { name="samplingEstimates"; version="0.1-3"; sha256="1srdchlpxksfdqhf5qdvl7nz0qsxkxww7hzqj0q71asbzlq3am3p"; depends=[samplingVarEst]; }; - samplingVarEst = derive2 { name="samplingVarEst"; version="1.1"; sha256="1ffdw7s3jf5xfcbiqbrk4f3d0ym1s690wlc24yvhp5fvh5rghjn3"; depends=[]; }; + samplingVarEst = derive2 { name="samplingVarEst"; version="1.3"; sha256="031iwgiw7dcncw1smxidn3kyvl0n06j5ag4pbhnicfqpj0pnx3l3"; depends=[]; }; samplingbook = derive2 { name="samplingbook"; version="1.2.2"; sha256="1szx9bdlxxn2yhy9i362fcscn5cydvrkw9kggr7yqb715k5n1j6n"; depends=[pps sampling survey]; }; - samr = derive2 { name="samr"; version="2.0"; sha256="0rsfca07pvmhfn7b49yk2ycw00wsq6dmrpv9haxz8q0xv7n5n2q9"; depends=[impute matrixStats]; }; + samr = derive2 { name="samr"; version="3.0"; sha256="01km0f7qgm73x19vbvsxl083hs1dq4dj8qm5h64cxbf20b08my15"; depends=[GSA impute matrixStats openxlsx shiny shinyFiles]; }; sand = derive2 { name="sand"; version="1.0.3"; sha256="0h7djria9v75gqcygjcfznpchqgxjqc6b43arvq9ni1xjrq8sszf"; depends=[igraph igraphdata]; }; - sandwich = derive2 { name="sandwich"; version="2.4-0"; sha256="1h6c12cfv2x42laxf6ifxfk9hqzagvvvimzak88fv8vnxnf5nc9l"; depends=[zoo]; }; + sandwich = derive2 { name="sandwich"; version="2.5-0"; sha256="168kq5kk34xbhfsxsanard9zriyp6cw0s09ralzb57kk42pl9hbc"; depends=[zoo]; }; sanitizers = derive2 { name="sanitizers"; version="0.1.0"; sha256="1c1831fnv1nzpq8nw9krgf9fm8v54w0gvcn4443b6jghnnbhn2n6"; depends=[]; }; sankey = derive2 { name="sankey"; version="1.0.2"; sha256="0jvcr2bn69aklfbgj4hbsrc047mymrx0jmsg26m0g6w7n1igqvcw"; depends=[simplegraph]; }; sanon = derive2 { name="sanon"; version="1.5"; sha256="1iikm7ivlz87kbq0ax9r1dz29zdq1kmhxd2imzc4hkvr1rwgciv6"; depends=[]; }; santaR = derive2 { name="santaR"; version="1.0"; sha256="10g4z951mpxw9d21s5f6zwfch5xs9vx812fb0wyrbw9s8drmlbkh"; depends=[doParallel foreach ggplot2 gridExtra iterators pcaMethods plyr reshape2 shiny shinythemes]; }; sapa = derive2 { name="sapa"; version="2.0-2"; sha256="056xlh14dnzq4x7sbp7ff2k61jxy7110a742b502vz549qfrr5ds"; depends=[ifultools splus2R]; }; - sarima = derive2 { name="sarima"; version="0.5-2"; sha256="00xlfd8hrplxn66k2nfc7ivyacrr6rqgsv9ylsjynibpidvkkn17"; depends=[FitAR FitARMA lagged ltsa PolynomF portes Rdpack]; }; + sarima = derive2 { name="sarima"; version="0.7.6"; sha256="1x0qxvq2sax8c2x3max4ghhdrxcyji92vdz4bg5jkpakrn4ilm8a"; depends=[FitAR FitARMA Formula KFAS lagged ltsa numDeriv PolynomF Rcpp RcppArmadillo Rdpack]; }; + sars = derive2 { name="sars"; version="1.0.0"; sha256="055h2sldx0yiqipk5rpxpskh7hz2d5qjvylv72rwq7s76jbnyqnn"; depends=[cli crayon dplyr nortest numDeriv]; }; sas7bdat = derive2 { name="sas7bdat"; version="0.5"; sha256="0qxlapb6wdhzpwlmzlhscy3av7va3h6gkzsppn4sx5q960310an3"; depends=[]; }; sasMap = derive2 { name="sasMap"; version="1.0.0"; sha256="11vhhxhakqm1gsb3p4s4966sapmrqfyw79zfppbx5lnqi3xr0ngn"; depends=[readr stringi stringr]; }; satellite = derive2 { name="satellite"; version="1.0.1"; sha256="1g8zzlsdvb56l2jph7i5wjgbpyx5dkwa3nv8mzmg0qyh3zd9pyi0"; depends=[plyr raster Rcpp]; }; @@ -10960,31 +11446,36 @@ in with self; { saturnin = derive2 { name="saturnin"; version="1.1.1"; sha256="0cjp4h1s9ivn17v8ar48mxflaj9vgv92c8p9l2k5bc9yqx9mcs36"; depends=[Rcpp RcppEigen]; }; saves = derive2 { name="saves"; version="0.5"; sha256="1b4mfi2851bwcp0frx079h5yl6y1bhc2s8ziigmr8kwy1y1cxw10"; depends=[]; }; saws = derive2 { name="saws"; version="0.9-6.1"; sha256="0w40j6xczqs74z1z3na4510w06px7yn55s2mw9mddd6736l56fv1"; depends=[gee]; }; + sazedR = derive2 { name="sazedR"; version="1.0.0"; sha256="1cpc27rla0wn19fjxr0rflmmd4f1rh5phprny39abwx81nqx8s2p"; depends=[bspec fftwtools forecast pracma signal zoo]; }; sbart = derive2 { name="sbart"; version="0.1.1"; sha256="0552dbdj7rm1h7dbl34m4r4disra6x3p919d9c4719ks88i78255"; depends=[LaplacesDemon msm Rcpp]; }; sbfc = derive2 { name="sbfc"; version="1.0.1"; sha256="1xz8h1m5d5ahrz4wsy55amd5mxh3acjs5qmcn7gl6yh3pn0c8phf"; depends=[DiagrammeR discretization Matrix Rcpp RcppArmadillo]; }; sbgcop = derive2 { name="sbgcop"; version="0.980"; sha256="0vmg8b4462qghlyx6hq0raf9xqvygzgwi5y0cbqcljhmbmqjrwxs"; depends=[]; }; sbioPN = derive2 { name="sbioPN"; version="1.1.0"; sha256="0yvg55xnkhm35hfl7rldy2grb26hm4a68jr4x9n45fs7hhdylxri"; depends=[]; }; + sbl = derive2 { name="sbl"; version="0.1.0"; sha256="1wxzscii0kp55sngmjccrqvc8zm1zamfh406r12irrz2wbxwqnkw"; depends=[]; }; sbmSDP = derive2 { name="sbmSDP"; version="0.2"; sha256="1sl46lqi6w0s7ghv4bywhic56cm2vib3kawprga760m6igargx4y"; depends=[Rcpp RcppArmadillo]; }; + sboost = derive2 { name="sboost"; version="0.1.0"; sha256="1pnl64yyppffi730rp230cfhwfnpzn7s8dcii3k0m9in3z31j002"; depends=[dplyr Rcpp rlang]; }; sbpiper = derive2 { name="sbpiper"; version="1.9.0"; sha256="0pjq88ixk494wlz4nh5anbsn59mmh9wg564qh3vzwwqgxf1k61cg"; depends=[colorRamps data_table factoextra FactoMineR ggplot2 Hmisc reshape2 scales stringr]; }; sbrl = derive2 { name="sbrl"; version="1.2"; sha256="1d0f2mlzzcghhvqagrr954qa69b5v47milw3iazxihh8q1qlird2"; depends=[arules Rcpp]; }; sbtools = derive2 { name="sbtools"; version="1.1.6"; sha256="1wvd7xbkfyx88bi1vz30c6jb20fgsrcgpvkw4g4ym0966vhv1ca1"; depends=[curl httr jsonlite stringr]; }; + scBio = derive2 { name="scBio"; version="0.1.2"; sha256="01yqfqddgak0iaysphsf08mbkqbgbpr0gsyvkj3hpyj7kk1937h4"; depends=[doSNOW fields foreach LiblineaR limma raster sp]; }; + scPDSI = derive2 { name="scPDSI"; version="0.1.0"; sha256="1p5hrahklm85hawssp223hc1binyhz3fadd9qkr7hw3a47yn9cc5"; depends=[Rcpp]; }; scRNAtools = derive2 { name="scRNAtools"; version="1.0"; sha256="0x0lniqhq6q87y08kkkyvmk1g5b8i73hm3h86ba8rcv0v0n7ap9a"; depends=[ALL ConsensusClusterPlus corrplot edgeR foreach ggplot2 ggthemes Hmisc igraph lattice limma PerformanceAnalytics plyr reshape2 Rmisc Rtsne scatterplot3d survival TPEA]; }; scaRabee = derive2 { name="scaRabee"; version="1.1-3"; sha256="1yap3hi36f8hk93jn59nxrbgq8iw0xwkkm3pc2gb50cpcpaq41pd"; depends=[deSolve lattice neldermead]; }; scagnostics = derive2 { name="scagnostics"; version="0.2-4.1"; sha256="1azg1xlid63l9mcyns9yyl3a3hykbl0sl0h5jhyvzjzahfyanq53"; depends=[rJava]; }; scaleboot = derive2 { name="scaleboot"; version="0.3-4"; sha256="16shdj4b8pbdbphqzw7r5xzx6k2qfkr729inv21gkp9qcp4h0vrm"; depends=[mvtnorm pvclust]; }; - scales = derive2 { name="scales"; version="0.5.0"; sha256="0zg9wfzmsdjxpbld0nzv7hcpq5r0wazqxmn7grvvif2agj0w1z6v"; depends=[dichromat labeling munsell plyr R6 RColorBrewer Rcpp viridisLite]; }; - scalpel = derive2 { name="scalpel"; version="1.0.0"; sha256="0zk81q2f49vrbprlvjq3q4s2ak7rrlpj55rrfkqr8nq1vvi6nxd2"; depends=[gam igraph Matrix protoclust R_matlab SDMTools]; }; + scales = derive2 { name="scales"; version="1.0.0"; sha256="0353dkh3d7x78463c6ds80hcml59lrqwr8rlv82a8dnkxla4l7qc"; depends=[labeling munsell R6 RColorBrewer Rcpp viridisLite]; }; + scalpel = derive2 { name="scalpel"; version="1.0.1"; sha256="18mapg96xl9a1g85h5xhqsz1333hkc28z0ivfjaff933p1kc6sng"; depends=[gam igraph Matrix protoclust R_matlab SDMTools]; }; scalreg = derive2 { name="scalreg"; version="1.0"; sha256="06iqij1cyiw55ijzk2byrwh3m5iwsra7clx8l4v69rc236q8zbdi"; depends=[lars MASS]; }; - scam = derive2 { name="scam"; version="1.2-2"; sha256="04w0y2l4h3xddb6mzyhf0mcx6kbphrmjyfc59cqw9z88sssfrmm7"; depends=[Matrix mgcv]; }; + scam = derive2 { name="scam"; version="1.2-3"; sha256="0ray17cbfd25x61kvpbg1kplpgz1dak4kp3p6lalffgjh94qry27"; depends=[Matrix mgcv]; }; scan = derive2 { name="scan"; version="0.20"; sha256="1xyng9dlfmp7n2h91n4xy9lx3jm205gjiizdqk1yj1qw8mmahvqc"; depends=[nlme]; }; scanstatistics = derive2 { name="scanstatistics"; version="1.0.1"; sha256="147fhq34vqkq50bw0g3a112048s5jaxxcwm3iv5wykp8zl45msmz"; depends=[dplyr emdbook ismev magrittr plyr purrr Rcpp RcppArmadillo reliaR sets tibble tidyr]; }; scape = derive2 { name="scape"; version="2.3-2"; sha256="1i3k37r7lisrj1pblni5xn76kf6py52s4yd51fm78c3286yfaasf"; depends=[coda Hmisc lattice]; }; scar = derive2 { name="scar"; version="0.2-1"; sha256="04x42414qxrz8c7xrnmpr00r46png2jy5giwicdx6gx8jwrkzhzs"; depends=[]; }; scatr = derive2 { name="scatr"; version="1.0.1"; sha256="1c2z722i7d7qflh4mzb8kkix5i22wph98kwz2p98x2mhaml8802d"; depends=[cowplot ggplot2 ggridges ggstance jmvcore R6]; }; scatterD3 = derive2 { name="scatterD3"; version="0.8.2"; sha256="1cfh060ffwxy33b1f7n8mba1sbbwgx28mqn08im16dqbphkcmx1z"; depends=[digest ellipse htmlwidgets]; }; - scatterpie = derive2 { name="scatterpie"; version="0.1.0"; sha256="0ssfvnwwfyavzxxrbimb623pc0y72qvbis16sdr6fxvyfif4qmm5"; depends=[ggforce ggplot2 rlang tidyr]; }; + scatterpie = derive2 { name="scatterpie"; version="0.1.2"; sha256="0r3m3781jvzxr0ry7rhd085c0xl5620sf5zcq9nnfl613imwxj2b"; depends=[ggforce ggplot2 rlang rvcheck tidyr]; }; scatterplot3d = derive2 { name="scatterplot3d"; version="0.3-41"; sha256="152xqz9c70qab86mpgng049gxsg5f4fpf1m8dh93fb9v1avjd0sc"; depends=[]; }; - scclust = derive2 { name="scclust"; version="0.1.1"; sha256="1bml4qyyspwaqxzwjhqy8i450614p3f3dj0s0qdkv6psa60h0w5z"; depends=[distances]; }; + scclust = derive2 { name="scclust"; version="0.2.0"; sha256="11jnjij62vcnvbd9m27xjdmyjib35isviqb07435yas93bn01vz4"; depends=[distances]; }; scdensity = derive2 { name="scdensity"; version="1.0.2"; sha256="173xm3bf8vxl30zk4n451al7m003byg9q4d1l1pfyfa4xnv8qdg9"; depends=[lpSolve quadprog]; }; scdhlm = derive2 { name="scdhlm"; version="0.3.1"; sha256="1b5x4kqvmkpb8wbgfhnwqakisw6hfnvama2bsnd8kvw4alfanxhm"; depends=[nlme]; }; scenario = derive2 { name="scenario"; version="1.0"; sha256="0v1b00kiny21yx4qkk2x51cy1zqibdnd68z76qia7h5py28yhxsi"; depends=[]; }; @@ -11001,13 +11492,14 @@ in with self; { sciplot = derive2 { name="sciplot"; version="1.1-1"; sha256="1ydwx9kh778z3x7s3i6gqinqi6bmsf6bslaf0mgszj0nrgcmj6y3"; depends=[]; }; sclero = derive2 { name="sclero"; version="0.2"; sha256="1vqysby822s958msnwcqmz78193vrgmpf6si1jnfb9cj90hh7wgg"; depends=[plyr RImageJROI spatstat]; }; scmamp = derive2 { name="scmamp"; version="0.2.55"; sha256="17qhj9l1akxachaimy9d5rls8adph8aalj3qr6ckip29a8ma9gf7"; depends=[ggplot2 graph reshape2 Rgraphviz]; }; + scoper = derive2 { name="scoper"; version="0.1.0"; sha256="1a170x1h2wglsmqp0fjga2q29yfnfdbgjcm62412n575j9d4xp5n"; depends=[alakazam doParallel dplyr foreach ggplot2 iterators lazyeval shazam stringi]; }; scopr = derive2 { name="scopr"; version="0.3.2"; sha256="0wssxfhkgpqzw5gbqbidawj7wizwcbra8inrxvnmsjxq0fhhzazy"; depends=[behavr data_table memoise readr RSQLite stringr]; }; score = derive2 { name="score"; version="1.0.2"; sha256="1p289k1vmc7qg70rv15x05dyb92r7s6315whr1ibi40sqln62a5s"; depends=[msm]; }; - scorecard = derive2 { name="scorecard"; version="0.1.8"; sha256="04zjlpchdbbm40n12am5094ha36bdiycbq5vzbh0vc3kmc6xhjp1"; depends=[data_table doParallel foreach ggplot2 gridExtra]; }; + scorecard = derive2 { name="scorecard"; version="0.1.9"; sha256="1786j57kg6v8yl88p5zhyi3g7vp5j4j8bci7bill134x9z63nacq"; depends=[data_table doParallel foreach ggplot2 gridExtra]; }; scorecardModelUtils = derive2 { name="scorecardModelUtils"; version="0.0.0.9"; sha256="1hnz9dgx5fxbhh54psalrr50n22vc250v2xxxl49j09q26xh37kl"; depends=[car e1071 gbm ggplot2 partykit randomForest reshape2 sqldf stringr]; }; scorer = derive2 { name="scorer"; version="0.2.0"; sha256="1mc4hxcrqzh4dmz5fy40740bnrp4fxia81fj3cdw9382p67ivhim"; depends=[Rcpp]; }; scoring = derive2 { name="scoring"; version="0.6"; sha256="114jlpbnm15fdan5lr40adxdzwajy3yhdw6dm4kvkvky6qhcx7q5"; depends=[]; }; - scoringRules = derive2 { name="scoringRules"; version="0.9.4"; sha256="0m8050qqb3j0miwfbadp6lmd2q5vicsqn4waw4jszz52fhb8mv27"; depends=[MASS Rcpp RcppArmadillo]; }; + scoringRules = derive2 { name="scoringRules"; version="0.9.5"; sha256="0aby9il4jd6ky8py0qk651al8c0ffqnmfnnzphy6pvndc0q0m085"; depends=[knitr MASS Rcpp RcppArmadillo]; }; scout = derive2 { name="scout"; version="1.0.4"; sha256="0vr497g7g1xhf75cwjbjsns2fvdzy86iibbf5w0g2xylw82s4lh2"; depends=[glasso]; }; scpm = derive2 { name="scpm"; version="1.0-2"; sha256="0jrr90lcalchfqmq5c8ja7ws88rpri3gjdc5z4jfpazn2vznx26n"; depends=[geoR interp lattice MASS Matrix mvtnorm RandomFields rgl]; }; scraEP = derive2 { name="scraEP"; version="1.1"; sha256="0dimvdjlgaymjmd3gf60hxcavpr58bpffrfhlksnrfzbb7an65dd"; depends=[data_table RCurl XML]; }; @@ -11015,42 +11507,43 @@ in with self; { scrime = derive2 { name="scrime"; version="1.3.3"; sha256="1vp7ai10m0f3s0hywyqh0yllxj6z6p795zqpr6vp58fh6yq20x73"; depends=[]; }; scriptName = derive2 { name="scriptName"; version="1.0.0"; sha256="0jpr9x5hf45cik5zxqw0j3vkvbk04a7ck2crvb2472hrv7s9al55"; depends=[purrr rlang]; }; scriptests = derive2 { name="scriptests"; version="1.0-16"; sha256="11l145gvzkxqwbzw976rq94krly1p4lahqw051dwaacarq4hnrdg"; depends=[]; }; - scriptexec = derive2 { name="scriptexec"; version="0.2.1"; sha256="09gaccqadb51ia66xk9vi3p9472s82bg6v8i6ba390g04yipbipi"; depends=[]; }; + scriptexec = derive2 { name="scriptexec"; version="0.2.3"; sha256="0smpn7d1lqyq5x8l5rdhybzv0sqrps0czv1r8bni67i80zjaaff8"; depends=[]; }; scrm = derive2 { name="scrm"; version="1.7.2-4"; sha256="1fj0204hc0yvahg3plz3ia9kwa93mimk721mf2dljwdnj46lb067"; depends=[Rcpp]; }; scrubr = derive2 { name="scrubr"; version="0.1.1"; sha256="0dqsk6vvc79qmjcr1gdksqzbd064nkyqfj2mxg6z7aifqgxs8zzz"; depends=[lazyeval magrittr Matrix qlcMatrix]; }; scs = derive2 { name="scs"; version="1.1-1"; sha256="1qx8b73g5v7mjx85lx5bln6j6i9r7m238i7hm8adr2jrbl33532y"; depends=[Matrix]; }; scuba = derive2 { name="scuba"; version="1.9-1"; sha256="1b92b6p9dn54rmcaw2ng41pvvvkmrzgg12d6zcr3yh8qgi89pvdi"; depends=[]; }; - sdPrior = derive2 { name="sdPrior"; version="0.5"; sha256="1l086a4ghx36fi951z968mpqdjpd64ilqvim6hcm05pl8dj7xcva"; depends=[BayesX caTools doParallel GB2 MASS mgcv mvtnorm pscl rsvd]; }; + sdPrior = derive2 { name="sdPrior"; version="1.0-0"; sha256="0g4crlasnvxz752n3az5jc681jvvj2g87c3a8s2h1i2vh64p5h37"; depends=[doParallel GB2 MASS mgcv mvtnorm pscl]; }; + sdStaf = derive2 { name="sdStaf"; version="1.0.0"; sha256="0yd6nh2kdg81j4hdwbjjmd7ah4jl0p5vm15jq9v3mkw6rrjdz9bi"; depends=[dismo dplyr ggplot2 raster rasterVis rgdal rgeos sp tidyr]; }; sda = derive2 { name="sda"; version="1.3.7"; sha256="1v0kp6pnjhazr8brz1k9lypchz8k8gdaby8sqpqzjsj8klghlcjp"; depends=[corpcor entropy fdrtool]; }; sdat = derive2 { name="sdat"; version="1.1"; sha256="1mxijw2yfblqjvqqb2xrzhfn9c872i1q9ggw24xicvr2fk4lvjw6"; depends=[]; }; sdcMicro = derive2 { name="sdcMicro"; version="5.3.0"; sha256="0n2pbwm344iw3zm0nf6ybx51hf79jhjzd2780c57n71jl2ybxzpk"; depends=[car carData cluster data_table DT e1071 ggplot2 haven knitr MASS prettydoc Rcpp rhandsontable rmarkdown robustbase sets shiny shinyBS VIM xtable]; }; - sdcTable = derive2 { name="sdcTable"; version="0.23"; sha256="00zh55zpi6y5mrhyzxj1r9f2r1axikgy0dimxv7978sasxsm3hnm"; depends=[data_table data_tree knitr lpSolveAPI Rcpp Rglpk rlang slam stringr]; }; + sdcTable = derive2 { name="sdcTable"; version="0.24"; sha256="10qwfa64fji7l24znrhl15ich2bmsq2y219y0pbr6q4xy02vp515"; depends=[data_table data_tree knitr lpSolveAPI Rcpp Rglpk rlang slam stringr]; }; sdcTarget = derive2 { name="sdcTarget"; version="0.9-11"; sha256="18cf276mh1sv16xn0dn8par4zg8k7y8710byxiih6db4i616fjpi"; depends=[doParallel foreach magic tuple]; }; sddpack = derive2 { name="sddpack"; version="0.9"; sha256="1963l8jbfwrqhqcpif73di9i5mb996r4f8smjyil6l7sdir7cg9l"; depends=[]; }; sde = derive2 { name="sde"; version="2.0.15"; sha256="0gxyhq9lafd62y68h7fd746a3jz3jdsm0shgwm2ylmp4a2f5cdmm"; depends=[fda MASS zoo]; }; sdef = derive2 { name="sdef"; version="1.7"; sha256="0x2b8shp02ik0dd11wi3jcrl9h9m963fnkfy47fwwhav9x6jg0jf"; depends=[]; }; sdm = derive2 { name="sdm"; version="1.0-46"; sha256="14z8336yxja1j7mx8xszqqi6s24nk6r5bycmw8h01wvq4rqgxi4g"; depends=[raster sp]; }; - sdmpredictors = derive2 { name="sdmpredictors"; version="0.2.6"; sha256="1kbgv5x5ilzccafl20x86fi9f7jqxnccvb8k7dy8q41s9n36qwfs"; depends=[R_utils raster rgdal]; }; + sdmpredictors = derive2 { name="sdmpredictors"; version="0.2.8"; sha256="18374f2bnhh3nb62xf1h6fbqgpimlnkc2vbx5xkg5gyfylydz0v9"; depends=[R_utils raster rgdal]; }; sdmvspecies = derive2 { name="sdmvspecies"; version="0.3.2"; sha256="19avkag13ij1k65vqhmvcy8j50j8vrgw4mjc49x8i63w3d4z1wxh"; depends=[psych raster]; }; sdnet = derive2 { name="sdnet"; version="2.3.8"; sha256="10c962wbzgl2zpz7yx5kpryldbbq76qrd5pnz4rlmbaa9kfg08s5"; depends=[]; }; sdols = derive2 { name="sdols"; version="1.6"; sha256="083yvlqgr5151dy0570jkhns12nyj2na2gk39vf8gv0gyw72c3yk"; depends=[commonsMath rscala]; }; sdprisk = derive2 { name="sdprisk"; version="1.1-5"; sha256="1c6mipq8sh8347i7m7dh47f69fr21xkrsk8yjgsdvcy41h8zijmf"; depends=[numDeriv PolynomF rootSolve]; }; - sdpt3r = derive2 { name="sdpt3r"; version="0.1"; sha256="06mw1h6c8gkhi3vhal17h7px3bb277xz15k2ryqjwc7agzwhmv8c"; depends=[Matrix]; }; + sdpt3r = derive2 { name="sdpt3r"; version="0.2"; sha256="0q97gxmf2vka566dm6jry5q2scqnm88fq0v5kqkphihsi52kya23"; depends=[Matrix]; }; sdtoolkit = derive2 { name="sdtoolkit"; version="2.33-1"; sha256="0pirgzcn8b87hjb35bmg082qp14idc5pfvm6dikpgkswag23hwh8"; depends=[]; }; sdwd = derive2 { name="sdwd"; version="1.0.2"; sha256="0l0w4jn2p9b7acp8gmlv4w8n662l397kbrm4glslik0vnmjv151w"; depends=[Matrix]; }; seaaroundus = derive2 { name="seaaroundus"; version="1.2.0"; sha256="09nyypzylb0y04ssd9ak2cw8wpy6a3nmabg9p7jrc8qz54wl6z4q"; depends=[crul ggplot2 jsonlite maps rgdal scales sp wicket]; }; - seacarb = derive2 { name="seacarb"; version="3.2.8"; sha256="02l10jgjw79vf31c8qfzfpyrfhlc0j2dibs4pkk5y7visggzr47p"; depends=[gsw oce]; }; + seacarb = derive2 { name="seacarb"; version="3.2.10"; sha256="0l3df69744bsibml6lq3a8cbx846095vgv0icnmrp6rz07x74g7p"; depends=[gsw oce]; }; sealasso = derive2 { name="sealasso"; version="0.1-2"; sha256="0cjy3fj170p5wa41c2hwscmhqxwkjq22vhg9kbajnq7df2s20jcp"; depends=[lars]; }; sealr = derive2 { name="sealr"; version="0.1.1"; sha256="1y31k4y3v1mvjagsbr4647hdn8rk4nfdyixidl3myq0qhnaf0x6w"; depends=[clipr clisymbols digest dplyr glue magrittr purrr rlang rstudioapi styler tibble tidyr]; }; searchConsoleR = derive2 { name="searchConsoleR"; version="0.3.0"; sha256="1z8bdlxq2sk8bcg164wy0yrmsx0inf0aj5ya2pybvadss8wr0qlr"; depends=[googleAuthR stringr]; }; searchable = derive2 { name="searchable"; version="0.3.3.1"; sha256="0xc87i2q42j7dviv9nj4hkgjvpfiprkkjpgzwsy47vp7q8024dv0"; depends=[magrittr stringi]; }; searcher = derive2 { name="searcher"; version="0.0.3"; sha256="004k757hn5y80k7kim3049n3mjrsimqpzdz5fis2ggxbdwwf1bs1"; depends=[]; }; seas = derive2 { name="seas"; version="0.5-2"; sha256="0hn4d5dc01zyycd7l3vj1sx6bq668n7fzffw9ypaa5l20fizs0ay"; depends=[MASS]; }; - season = derive2 { name="season"; version="0.3.6"; sha256="1q0xih4vj0pv1xcgdi2d6vl56gd1gmzfbyc0aklpjz9iaxmxgb8f"; depends=[coda ggplot2 MASS mgcv survival]; }; + season = derive2 { name="season"; version="0.3.8"; sha256="0kw3gvy7rv0rms0zj1rvqlfdn3yxr9r9ldm21zl2xrpx9cy04d2d"; depends=[ggplot2 MASS survival]; }; seasonal = derive2 { name="seasonal"; version="1.6.1"; sha256="1nvavn84f2zb0f6n352br52wcrcmnxv6vprzcpymrnzik7pyp8y6"; depends=[x13binary]; }; seasonalview = derive2 { name="seasonalview"; version="0.3"; sha256="1l705yc7ssldsfckbgnvd95sh3zzhpkmf1rr6ar2s60s3wsyly4n"; depends=[dygraphs htmlwidgets openxlsx seasonal shiny shinydashboard xtable xts zoo]; }; seawaveQ = derive2 { name="seawaveQ"; version="1.0.0"; sha256="19vm1f0qkmkkbnfy1hkqnfz6x2a7g9902ka76bhpcscynl69iy56"; depends=[lubridate NADA survival]; }; - secr = derive2 { name="secr"; version="3.1.6"; sha256="0mf0p7asx2shf630j5xd7ym21f76a0af536wzs9rdbhq0xychv6z"; depends=[abind MASS mgcv nlme raster sp stringr]; }; + secr = derive2 { name="secr"; version="3.1.7"; sha256="0shshkgv89q2w51nmrqx482d8d28xjyrwdnwr6g4061rxms7plsz"; depends=[abind MASS mgcv nlme raster sp stringr]; }; secrdesign = derive2 { name="secrdesign"; version="2.5.4"; sha256="1kbqgdjpyns11ag16rgw9n6mvmjgdypk9lv3yzwf4kynds46wbbk"; depends=[abind secr]; }; secret = derive2 { name="secret"; version="1.0.0"; sha256="09b28f7ndc167bbanbdydralykq718fixnrgs5xr9d3fbdhz1vdl"; depends=[assertthat curl jsonlite openssl rprojroot]; }; secrlinear = derive2 { name="secrlinear"; version="1.1.1"; sha256="0jcvraypkss1gphh4cjb0b4v9460fj4dw80yd057ah11p9942ggs"; depends=[igraph maptools MASS rgdal secr sp]; }; @@ -11060,7 +11553,7 @@ in with self; { seedCCA = derive2 { name="seedCCA"; version="1.0"; sha256="1grs6ykiyp8p5gh93hgb4niggppbh2wzwl6yx0l1qs9fkcz5zvy7"; depends=[CCA corpcor]; }; seedy = derive2 { name="seedy"; version="1.3"; sha256="1a21sl8i7z12cjaqj08lkq3viazxlgxv82vaarm58fgbpsvdi0m0"; depends=[]; }; seewave = derive2 { name="seewave"; version="2.1.0"; sha256="0i0zhvgl64fwpabnwvfdxndmw5whhh2fd4lhpg399w4rzrwzv92y"; depends=[tuneR]; }; - seg = derive2 { name="seg"; version="0.5-1"; sha256="0gsdbq7b5wpknhlilrw771japr63snvx4vpirvzph4fjyby1c7rg"; depends=[sp splancs]; }; + seg = derive2 { name="seg"; version="0.5-5"; sha256="0q1k3zh29pkxx2sq28dw1vn4nmdv7pa8pw48vmywfcm4vmqnx7xg"; depends=[sp splancs]; }; segclust2d = derive2 { name="segclust2d"; version="0.1.0"; sha256="0kymw36cvakx84c96npkbnsvv0a1s82773ib5c802ybvkb2r1k9p"; depends=[dplyr ggplot2 magrittr plyr RColorBrewer Rcpp RcppArmadillo reshape2 scales zoo]; }; segmag = derive2 { name="segmag"; version="1.2.4"; sha256="1i717xg1z7s35pkwzywgjf9wx7zj9xksv0k87h7p1q62y073qbqm"; depends=[plyr Rcpp]; }; segmented = derive2 { name="segmented"; version="0.5-3.0"; sha256="0nrik5fyq59hwiwjcpbi4p5yfavgfjq6wyrynhkrbm4k6v1g1wlq"; depends=[]; }; @@ -11082,20 +11575,20 @@ in with self; { semPLS = derive2 { name="semPLS"; version="1.0-10"; sha256="0q5linjyv5npkw4grx3vq58iq2q1grf06ikivhkg8w7rvb7pqn6b"; depends=[lattice]; }; semPlot = derive2 { name="semPlot"; version="1.1"; sha256="0fzz580an7mmq6vycxbcvfdqbii0qz0nghlidb6in05j8dppsnsn"; depends=[colorspace corpcor igraph lavaan lisrelToR OpenMx plyr qgraph rockchalk sem semTools XML]; }; semPower = derive2 { name="semPower"; version="1.0.0"; sha256="0wciz5qrd40q4mxq96pibnya11ac42n37c9xhjd4zfhznhjz06bb"; depends=[]; }; - semTools = derive2 { name="semTools"; version="0.5-0"; sha256="0akan511aj8qkn37aiw200nvyxwdqrz022ll16av2n7qsp9xdynh"; depends=[lavaan]; }; + semTools = derive2 { name="semTools"; version="0.5-1"; sha256="0lh10yw888hcj1mdl96p5pw8gi0a1dj8panclghry6b8xaa3w7ni"; depends=[lavaan]; }; semantic_dashboard = derive2 { name="semantic.dashboard"; version="0.1.1"; sha256="0fd5qnw5jcmf5akkv59z1zjizsczwlmnpkfd8bfminhpa89sgp1y"; depends=[shiny shiny_semantic]; }; semdiag = derive2 { name="semdiag"; version="0.1.2"; sha256="0kjcflw7dn907zx6790w7hnf5db6bf549whfsc0c2r173kf13irp"; depends=[sem]; }; - semds = derive2 { name="semds"; version="0.9-4"; sha256="14x6xqv15fgsxhsyxw77i3slpdaax8kcq9sx7ipwp1b83fmmqv1z"; depends=[minpack_lm pracma]; }; + semds = derive2 { name="semds"; version="0.9-5"; sha256="16zla94jzqrm2gji4sgiz44fw15f2kf4i8s76s1cnjai6saqcf9f"; depends=[minpack_lm pracma]; }; semiArtificial = derive2 { name="semiArtificial"; version="2.2.5"; sha256="1m8kwjhqjpqjzz22caiwpb4nb70d8y0ssf9j4rfyyh530x2q2k1m"; depends=[cluster CORElearn flexclust fpc ks logspline MASS mcclust nnet robustbase RSNNS StatMatch timeDate]; }; - seminr = derive2 { name="seminr"; version="0.5.0"; sha256="0f8k1v2g82axhaw5a370f95h9q07qar1by795wfc3yil7pn94xmy"; depends=[]; }; + seminr = derive2 { name="seminr"; version="0.5.3"; sha256="18yd2pcp4msy6w4gpj5znid4gygh1hg2794lhsjqxvyz36hb3i5p"; depends=[]; }; semsfa = derive2 { name="semsfa"; version="1.1"; sha256="1k6i1m4r9y7j85rlrsgfjm8w15ax4xgf70xyvqwsszmf9950ldxx"; depends=[doParallel foreach gamlss iterators mgcv moments np]; }; semtree = derive2 { name="semtree"; version="0.9.12"; sha256="07i82f3bnn9x7gy8gsjyd99mzcq9pk3xqb3479d338vpky2afv43"; depends=[bitops cluster digest OpenMx plotrix rpart rpart_plot sets]; }; semver = derive2 { name="semver"; version="0.2.0"; sha256="10wpkyms2cix3bsin2q0qhkbl445pwwpa5gm2s4jjw1989namkxy"; depends=[assertthat Rcpp]; }; sendmailR = derive2 { name="sendmailR"; version="1.2-1"; sha256="0z7ipywnzgkhfvl4zb2fjwl1xq7b5wib296vn9c9qgbndj6b1zh4"; depends=[base64enc]; }; sendplot = derive2 { name="sendplot"; version="4.0.0"; sha256="0ia2xck94nwirwxi38nv0viz5wb8291yiak6f0wgwh84irsrfp1h"; depends=[rtiff]; }; sensR = derive2 { name="sensR"; version="1.5-1"; sha256="0hqnk6gvlkl9harz7rh5ikbp0s0vjwi63gxixqjfhkyk02ilaa3z"; depends=[MASS multcomp numDeriv]; }; - sensiPhy = derive2 { name="sensiPhy"; version="0.8.2"; sha256="19sbcl3873r2jayxpr83n8w36br12c6p31y830gzi7a4q0cxaxxq"; depends=[ape caper geiger ggplot2 phylolm phytools]; }; - sensitivity = derive2 { name="sensitivity"; version="1.15.0"; sha256="02vqs1pqzivxpg2ql3wi0530cshdkz7hxvablpd1dzhvjnindknm"; depends=[boot]; }; + sensiPhy = derive2 { name="sensiPhy"; version="0.8.3"; sha256="03qrxal0wvgiyr5vnnzc8n95h4460p11idnmr6vnr73c5f8q905h"; depends=[ape caper geiger ggplot2 phylolm phytools]; }; + sensitivity = derive2 { name="sensitivity"; version="1.15.2"; sha256="0ilb79bbplnv5qlismp21jrzfxr1is59vww3s1p99ax303614w7m"; depends=[boot]; }; sensitivity2x2xk = derive2 { name="sensitivity2x2xk"; version="1.01"; sha256="1r829k939zzmi0j4chdaniajchcflmmjrl3a9hwnkg0wkfnjbvdl"; depends=[BiasedUrn mvtnorm]; }; sensitivityPStrat = derive2 { name="sensitivityPStrat"; version="1.0-6"; sha256="0rfzvkpz7dll3173gll6np65dyb40zms63fkvaiwn0lk4aryinlh"; depends=[survival]; }; sensitivityfull = derive2 { name="sensitivityfull"; version="1.5.6"; sha256="0g2gc4rms6gd34d23kxj50pjh0yq1h6yiybj4dxwyf6i2652irhq"; depends=[]; }; @@ -11105,10 +11598,10 @@ in with self; { sensors4plumes = derive2 { name="sensors4plumes"; version="0.9.3"; sha256="1r9sddnlxpjck7rhm2w7z8jak7wmrxg3d62dydc5dqcqhgp54r6p"; depends=[automap conf_design emdist FNN genalg gstat lattice raster rgdal sp]; }; sensory = derive2 { name="sensory"; version="1.1"; sha256="1zd0ajrymxi6gygcq9fqgwgy0g6c3cqz53x0k5m0ihbmh11rc7s7"; depends=[gtools MASS Matrix]; }; senstrat = derive2 { name="senstrat"; version="1.0.3"; sha256="0j6mb55v5ivqvk8nn8fjlzrbdgj6csa58yc6gy1g07m7gk2qz2np"; depends=[BiasedUrn MASS]; }; - sentimentr = derive2 { name="sentimentr"; version="2.3.2"; sha256="14f5zac5ywz864fbcia05kdlxx4bgvasc1l1abcrk34i2jvh8zwl"; depends=[data_table ggplot2 lexicon stringi syuzhet textclean textshape]; }; - sentometrics = derive2 { name="sentometrics"; version="0.4"; sha256="0mr064qb1wr0bpbrx1bl3imxy95ybxlx4bxpy25qcz07v5nynk5l"; depends=[abind caret data_table doParallel foreach ggplot2 ggthemes glmnet ISOweek MCS quanteda Rcpp RcppArmadillo RcppRoll stringi zoo]; }; + sentimentr = derive2 { name="sentimentr"; version="2.6.1"; sha256="1xwi3rjyhx3w042r2g4a8rzqr2svam7fdx2ivc9vyhj9y81az7fh"; depends=[data_table ggplot2 lexicon stringi syuzhet textclean textshape]; }; + sentometrics = derive2 { name="sentometrics"; version="0.5.1"; sha256="1icnf7p45hgh2z02xmxc5a7bx9k5r0jjs3mnpr1j97vnm19rk8jx"; depends=[abind caret data_table foreach ggplot2 glmnet ISOweek quanteda Rcpp RcppArmadillo RcppParallel RcppRoll stringi zoo]; }; separationplot = derive2 { name="separationplot"; version="1.1"; sha256="0qfkrk8n6jj8l7ywngwsaikfwmd9hbrpr43x0l9wkjjp1asgs5l6"; depends=[]; }; - seplyr = derive2 { name="seplyr"; version="0.5.8"; sha256="0ca9mg2fx3jdgybbiq2a22q5p6613awxwysrpgdbs5lrqdm1ywim"; depends=[dplyr rlang tidyr wrapr]; }; + seplyr = derive2 { name="seplyr"; version="0.8.2"; sha256="0inqnrqf2dld2dkhwp16iz8hzrvi01jbj437ghhvprfp06320lxg"; depends=[dplyr rlang tidyr wrapr]; }; seqCBS = derive2 { name="seqCBS"; version="1.2"; sha256="1kywi3kvvl9y6nm7cwf6fj8gz9gzznp5va336g1akzgy77k82d8v"; depends=[clue]; }; seqDesign = derive2 { name="seqDesign"; version="1.1"; sha256="1694swd8ik9fbiflmnw4xpq82kq18rqzkw0dv5pvq30c47xjgamv"; depends=[survival xtable]; }; seqHMM = derive2 { name="seqHMM"; version="1.0.8-1"; sha256="18rpmncm5xn34l336kzg0pby59pw16s5cdv3h946yhrcjigz0kkn"; depends=[gridBase igraph Matrix nloptr numDeriv Rcpp RcppArmadillo TraMineR]; }; @@ -11116,86 +11609,90 @@ in with self; { seqMeta = derive2 { name="seqMeta"; version="1.6.7"; sha256="11dscdrlnk5jzg0q2g59qis4xjr4xs86bi463jmhq53n9gsb4i1l"; depends=[CompQuadForm coxme Matrix survival]; }; seqRFLP = derive2 { name="seqRFLP"; version="1.0.1"; sha256="1i98hm8wgwr8b6hd237y2i9i0xgn35w4n2rxy4lqc5zq71gkwkvk"; depends=[]; }; seqinr = derive2 { name="seqinr"; version="3.4-5"; sha256="17zv0n5cji17izwmwg0jcbxbjl3w5rls91w15svcnlpxjms38ahn"; depends=[ade4 segmented]; }; - seqminer = derive2 { name="seqminer"; version="6.0"; sha256="057j1l6dip35l1aivilapl2zv9db677b3di2pb3sfgq2sxg0ps3l"; depends=[]; }; + seqminer = derive2 { name="seqminer"; version="6.1"; sha256="15yhg4vfc7jg1jnqb3371j00pgbmbyc9l1xx63hq1l3p34lazq2l"; depends=[]; }; seqmon = derive2 { name="seqmon"; version="2.1"; sha256="0p7vbrx0l59wyxhg59a8nnnk1z46inys30rpchj0v5ggadaazjkx"; depends=[]; }; seqtest = derive2 { name="seqtest"; version="0.1-0"; sha256="1bdfww9szh7h278id5xpfc39mxkcix3yvsdwc68wx3q3x0wxhqhq"; depends=[]; }; sequences = derive2 { name="sequences"; version="0.5.9"; sha256="17571m525b6a3k4f0m936wfq401181gx1fpb7x4v0fhaldzdmk3a"; depends=[Rcpp]; }; sequenza = derive2 { name="sequenza"; version="2.1.2"; sha256="0f3aj96qvbr1wqimlv6rxg0v34zlrgc6pbdy7sfkwfzs1n44q1xf"; depends=[copynumber squash]; }; - sequoia = derive2 { name="sequoia"; version="1.0.2"; sha256="1pn282s40ssprjrfh5drjr123ldlp84z3kviv6mmavrwhkp5lq5g"; depends=[plyr]; }; + sequoia = derive2 { name="sequoia"; version="1.1.1"; sha256="12s6890jr9rvp45h1hrfwpndsrr7na0kz1a29hd96ycnk7bvd1ic"; depends=[plyr]; }; sergeant = derive2 { name="sergeant"; version="0.5.2"; sha256="02chkyvmwd4nimw62v82rfbid1xqw5b1335na44pdi675g904250"; depends=[DBI dbplyr dplyr htmltools httr jsonlite purrr readr scales]; }; serial = derive2 { name="serial"; version="1.3"; sha256="1ibwd8xmkd0pwdhivm6h3yd3rsi28mai5n7qcs1bq2mx8hb5lg7f"; depends=[]; }; seriation = derive2 { name="seriation"; version="1.2-3"; sha256="1q6hw4hjw224b4y0dc0j630v2pgj6sn455nwkilb70w8k31hpk92"; depends=[cluster colorspace dendextend gclus gplots MASS qap registry TSP]; }; - serieslcb = derive2 { name="serieslcb"; version="0.1.0"; sha256="09mg8x738q7p16z95rrfj9fzmsrl34fvx9nsz1ndkp4h6cwf679l"; depends=[gplots shiny]; }; + serieslcb = derive2 { name="serieslcb"; version="0.2.0"; sha256="1af7mvfiv40hwjlf6f53grw48c343rnmzxiyw4yx95mf8rk46bsd"; depends=[gplots shiny]; }; seroincidence = derive2 { name="seroincidence"; version="2.0.0"; sha256="0sam4y7w6prswz0izkm1a9v2k5rv7z22g1ajy15n9xix9aml5ms4"; depends=[]; }; serrsBayes = derive2 { name="serrsBayes"; version="0.3-13"; sha256="1s38mva66l684i0wrk65r3gdafjlih7bglsmi9fr44yk0wavygrm"; depends=[MASS Matrix Rcpp RcppEigen truncnorm]; }; - servr = derive2 { name="servr"; version="0.10"; sha256="0yz3igqsiyqnjj1ngh199zicg3spx4kbmvl0wc8i8xahk6l9g06v"; depends=[httpuv jsonlite mime xfun]; }; + servr = derive2 { name="servr"; version="0.11"; sha256="0yj3p1risf269n25dd56lqv82dsxv6a0aq4bcc1ddn9wv7h2xdfi"; depends=[httpuv jsonlite mime xfun]; }; sesem = derive2 { name="sesem"; version="1.0.2"; sha256="0b1xzv38wpkhhlq87xrvlh45b8ksbi8bg4ar5hrf8gxa19r9rmi5"; depends=[gplots lavaan mgcv]; }; session = derive2 { name="session"; version="1.0.3"; sha256="04mcy1ac75fd33bg70c47nxqxrmqh665m9r8b1zsz5jij1sbl8q5"; depends=[]; }; - sessioninfo = derive2 { name="sessioninfo"; version="1.0.0"; sha256="00g3lbvk1cjjzckl70fn5n3579qb301im4lbm3cip5c2v8k283dk"; depends=[clisymbols withr]; }; + sessioninfo = derive2 { name="sessioninfo"; version="1.1.0"; sha256="01c0m8yzadpwd825hky6as0f8ka4xyz7zfy0ih2iy7qqw11w6qn5"; depends=[cli withr]; }; setRNG = derive2 { name="setRNG"; version="2013.9-1"; sha256="02198cikj769yc32v8m2qrv5c01l2fxmx61l77m5ysm0hab3j6hs"; depends=[]; }; sets = derive2 { name="sets"; version="1.0-18"; sha256="16v7650p47khqrbbw0z98llmwmmhswqmhri0n7nrfhdqwmby1lbl"; depends=[]; }; setter = derive2 { name="setter"; version="0.0-1"; sha256="10fwrx8yysp99rrkbnn3rbz79vyzr2h3p7zxxlqapw1k2lllp0r5"; depends=[assertive_base]; }; settings = derive2 { name="settings"; version="0.2.4"; sha256="092sv6nccm6p2d695l9w0zfi2xgymk12c8p8lhl9nb86mxrb3nry"; depends=[]; }; severity = derive2 { name="severity"; version="2.0"; sha256="1mp19y2pn7nl9m8xfljc515kk5dirv0r2kypazpmd956lcivziqq"; depends=[]; }; - sf = derive2 { name="sf"; version="0.6-3"; sha256="0c6ayyclhlna2jnpwi6glafw7ip7ar0ycsmms79x451mdqb5xvja"; depends=[classInt DBI magrittr Rcpp units]; }; + sf = derive2 { name="sf"; version="0.7-1"; sha256="0xpgv1fyha61s5sa2msgsznl23yi2rpki6jnjv7xg1a26bl0il89"; depends=[classInt DBI magrittr Rcpp units]; }; sfa = derive2 { name="sfa"; version="1.0-1"; sha256="1acqxgydf8j5csdkx0yf169x3yaa31r0ccdrqarh6vj1hacm89ad"; depends=[]; }; sfadv = derive2 { name="sfadv"; version="1.0.1"; sha256="1rfpm6km5pckwhqgpvidm6qsj5sjdaqqj5b0sgvpslivfa4c80cr"; depends=[gmm minpack_lm]; }; sfc = derive2 { name="sfc"; version="0.1.0"; sha256="0cm4mfcfd9bhf2j5fppsihzrfipnldb6q3xradd88z9pwgrkfx2a"; depends=[dplyr sna tidyr triangle zoo]; }; sfdct = derive2 { name="sfdct"; version="0.0.6"; sha256="0ilh89mfwp1yqn44yn80vz1a6g65hryk6w87ngzvak3pd6jxq6aa"; depends=[dplyr RTriangle sf sp tibble]; }; sfinx = derive2 { name="sfinx"; version="1.7.99"; sha256="14v47y00qwvc2s0vzjw19hwn85nzj8lna539c75qq6zkn6kir6va"; depends=[]; }; sfsmisc = derive2 { name="sfsmisc"; version="1.1-2"; sha256="0cgq2h11ngkzd6p34k6mqjnvlvc5vj4lnqrl64k05lb391j391w0"; depends=[]; }; - sft = derive2 { name="sft"; version="2.2-0"; sha256="0d1yiimc899i09yyrv1x40ixqss87xjpy08ab16h9faxd4bsk3y2"; depends=[fda SuppDists]; }; + sft = derive2 { name="sft"; version="2.2-1"; sha256="0fxz64ba58n6ghfqsgq64n1c7qkvi8c3lsa86732mil9w71yxw33"; depends=[fda SuppDists]; }; sgPLS = derive2 { name="sgPLS"; version="1.7"; sha256="1jk2j1zn5vq82rcjflnk7g6y2q0v5jl14k804dmigqg013gbykql"; depends=[mixOmics mvtnorm]; }; sgRSEA = derive2 { name="sgRSEA"; version="0.1"; sha256="0vyypnq81l36x0j44q2l9wbf3x4krz4fzypi7vyqhaq97mkzaw5j"; depends=[]; }; sgee = derive2 { name="sgee"; version="0.6-0"; sha256="055iydainzywb1s5id5rl9i94dj5arr9b6qz15p8wps49vm2mlp3"; depends=[copula mvtnorm]; }; sgeostat = derive2 { name="sgeostat"; version="1.0-27"; sha256="1iq9p2jk8bpv1h853a1l91d5c5dxnhkk3cmkd01siqqvj04hv4vb"; depends=[]; }; + sglOptim = derive2 { name="sglOptim"; version="1.3.7"; sha256="19rwich72xzdlwkp6cpqdjxa6hcfd4ys1ia66gzpvkyqs05m3561"; depends=[BH doParallel foreach Matrix Rcpp RcppArmadillo RcppProgress]; }; sglasso = derive2 { name="sglasso"; version="1.2.3"; sha256="1xf4jni7gybk66wp542p92jxrp4lf63ypbwsnb3av5db04bis7ll"; depends=[igraph Matrix]; }; sglg = derive2 { name="sglg"; version="0.1.3"; sha256="17w9mfb53ll8aqasl4ysnb0b7sk6cgp7s1cfvn07rg5win2swqrj"; depends=[Formula robustloggamma ssym survival]; }; sglr = derive2 { name="sglr"; version="0.7"; sha256="11gjbvq51xq7xbmpziyzwqfzf4avyxj2wpiz0kp4vfdj3v7p4fp9"; depends=[ggplot2 shiny]; }; - sgmcmc = derive2 { name="sgmcmc"; version="0.2.2"; sha256="1ga3dynhldkl98fd7fzbbhb4bryf6nyijwvxsj8i1szy4jsv8q3q"; depends=[tensorflow]; }; + sgmcmc = derive2 { name="sgmcmc"; version="0.2.3"; sha256="08n2m1aksa5frasmc4xa7c9b444icnzj0ycixvnq3d13v803ham4"; depends=[reticulate tensorflow]; }; + sgmodel = derive2 { name="sgmodel"; version="0.1.0"; sha256="03s9z7n7w3pys5dp1z5x91bszgv3q1sax5z591dz9rvmn5glp2lj"; depends=[ggplot2 ramify Rtauchen tidyverse]; }; sgof = derive2 { name="sgof"; version="2.3"; sha256="12bpyvg5df1m2ar6frpi10zlj3dk9h61r13rzn3w5a3nyk8gljsg"; depends=[poibin]; }; sgr = derive2 { name="sgr"; version="1.3"; sha256="0zxmrbv3fyb686hcgfy2w1w2jffxf41ab8yc90dsgf931s9c55wn"; depends=[MASS]; }; sgt = derive2 { name="sgt"; version="2.0"; sha256="0qb3maj5idwafs40fpdfrwzkadnh5yg8fvfzfs51p9yy69kbmlkx"; depends=[numDeriv optimx]; }; shades = derive2 { name="shades"; version="1.2.0"; sha256="06mz09rrrjp4dkzbw6nnv6n3k80ddwzaw4pkp4127d1f4cij9pnj"; depends=[]; }; - shadow = derive2 { name="shadow"; version="0.5.3"; sha256="036jh63y3i42yfjm96yp0xp3p77v1mzj77q0vl9msjhd246l5gm8"; depends=[plyr raster rgeos sp]; }; - shadowtext = derive2 { name="shadowtext"; version="0.0.2"; sha256="17ccylxnl6837cf81fwkgywjmqizmcm6mhqak10sl5apnqm5n1nl"; depends=[ggplot2]; }; + shadow = derive2 { name="shadow"; version="0.5.7"; sha256="11x3vrkar0cf0x8dgsylhk4j53mcpw1vcja0wfxa08y9rcbjlb5b"; depends=[plyr raster rgeos sp]; }; + shadowtext = derive2 { name="shadowtext"; version="0.0.3"; sha256="1mqi7n6m9mm86z3gv6cf37qbq8p4n0lqlzs9d7x873a27bpclca0"; depends=[ggplot2]; }; shallot = derive2 { name="shallot"; version="0.4.4"; sha256="0bjbw8l5lzz5d6nxgwjby40fxvxrfli0wkipdf84pg4nigy84w2w"; depends=[commonsMath rscala sdols]; }; shape = derive2 { name="shape"; version="1.4.4"; sha256="0hadk3mapkhbh8xjkiz52vxdagmmgvm15xwpzb90ikw4giyipjzl"; depends=[]; }; shapeR = derive2 { name="shapeR"; version="0.1-5"; sha256="17fq4gsdvyniq7n4x1xdvb5kk50184i7why3pdf1djjhknym087j"; depends=[gplots jpeg MASS pixmap vegan wavethresh]; }; shapefiles = derive2 { name="shapefiles"; version="0.7"; sha256="08ghndihs45kylbzd9wnxffn8ixvxjhjnjldjyd526ai2sj8xcgf"; depends=[foreign]; }; - shapes = derive2 { name="shapes"; version="1.2.3"; sha256="1fzwpqa0paql4n652diqsqylz5r5crblfip6g6c0vszrvy7avi4q"; depends=[MASS rgl scatterplot3d]; }; + shapes = derive2 { name="shapes"; version="1.2.4"; sha256="1zqykhx8rz1k2ahi2lmmzll1c8k0as6vw4gbd3rpfb5fvpni3ni0"; depends=[MASS minpack_lm rgl scatterplot3d]; }; sharpeRratio = derive2 { name="sharpeRratio"; version="1.1"; sha256="0rgsad8idhjyjgwlzk358jlqkqf6sk7g6vl3fchkamjzxnhbb8p9"; depends=[ghyp Rcpp]; }; sharpr2 = derive2 { name="sharpr2"; version="1.1.1.0"; sha256="1r7anfr296l5sbhgry6rb15hlca6mpcm24qssdzz9bckavyfvqgi"; depends=[Matrix mvtnorm]; }; sharpshootR = derive2 { name="sharpshootR"; version="1.0"; sha256="1x9cava7b9lg8qpmjqlbkqmpc9a2dn8k4kl71s4himr4wzp9z4y3"; depends=[ape aqp circular cluster digest Hmisc igraph lattice latticeExtra plyr RColorBrewer reshape2 scales soilDB sp vegan]; }; sharx = derive2 { name="sharx"; version="1.0-5"; sha256="10sfjg6946jfk4051da0w1v89503av40wckqaabr12syf8kn0aw8"; depends=[dclone dcmle Formula]; }; - shazam = derive2 { name="shazam"; version="0.1.9"; sha256="1dm553l1qwqajy5p13x3ms6x45ax33zh7b79iw6xx1chbrpalhmk"; depends=[alakazam ape diptest doParallel dplyr foreach ggplot2 igraph iterators kedd KernSmooth lazyeval MASS progress scales SDMTools seqinr stringi tidyr]; }; + shazam = derive2 { name="shazam"; version="0.1.10"; sha256="1rhd2jh8s548z4p984l0cqn0hgdvnv4mgfbb82k5l4m9p2rsii81"; depends=[alakazam ape diptest doParallel dplyr foreach ggplot2 igraph iterators kedd KernSmooth lazyeval MASS progress scales SDMTools seqinr stringi tidyr]; }; shelltrace = derive2 { name="shelltrace"; version="3.5.1"; sha256="1xgbavaa26185i6q3907ds3bzq4xrw027x1sw5vsybqrxdz04jiz"; depends=[bmp tiff xlsx]; }; shiftR = derive2 { name="shiftR"; version="1.4"; sha256="12mb4b5zhiq7hfkpc9hgi004hqli1kkkzdy2169svwrjv7bfifrn"; depends=[]; }; shiny = derive2 { name="shiny"; version="1.1.0"; sha256="12aw4kmf0j993fj4lpyqlyqzzn0bnniwd55w22p9pa0b3g6n9dbh"; depends=[crayon digest htmltools httpuv jsonlite later mime promises R6 rlang sourcetools xtable]; }; + shiny_i18n = derive2 { name="shiny.i18n"; version="0.1.0"; sha256="15llwr4yrx6rlk32b92wcq3dn360y5cvy4mh2aqkza9ikcvlhcvv"; depends=[jsonlite yaml]; }; + shiny_router = derive2 { name="shiny.router"; version="0.1.1"; sha256="0biwni6bk39qafvsh8w32crlgm4hf8r9kwkmnlc3w5za2x2fja4c"; depends=[magrittr shiny]; }; shiny_semantic = derive2 { name="shiny.semantic"; version="0.2.1"; sha256="0m0f22qlmf7f2cf33myn72dm48yslqyx4kwzb96i78a3yz6a2awp"; depends=[htmltools htmlwidgets jsonlite magrittr purrr shiny]; }; - shinyAce = derive2 { name="shinyAce"; version="0.3.1"; sha256="1hqgszbiv99dibhwr21v21ll4s2hjn3ccqdicsm0z3gk77bh8iyb"; depends=[jsonlite shiny]; }; + shinyAce = derive2 { name="shinyAce"; version="0.3.2"; sha256="1fbk5i6w6cpam8s3acf4bgdp8hajn4digjjix3i6i4q3p2rvn6zx"; depends=[jsonlite shiny]; }; shinyBS = derive2 { name="shinyBS"; version="0.61"; sha256="0rhim4mbp4x9vvm7xkmpl7mhb9qd1gr96cr4dv330v863ra2kgji"; depends=[htmltools shiny]; }; shinyDND = derive2 { name="shinyDND"; version="0.1.0"; sha256="0nkvz4hmjzmxlzj4vkjrdy8xlbxapg1amk180irgvwicqldi4jpm"; depends=[htmltools shiny]; }; - shinyFeedback = derive2 { name="shinyFeedback"; version="0.0.4"; sha256="14lvr99nfldlr101ysmpwz0zw0bjvr6b7lfm0msx57ymh6gjzg3n"; depends=[digest shiny]; }; - shinyFiles = derive2 { name="shinyFiles"; version="0.7.0"; sha256="1bs1dj84scg4gkrdlw1jvmnwckcjcdpzc8drwmr8h6cxk3yklijc"; depends=[htmltools jsonlite shiny]; }; + shinyFeedback = derive2 { name="shinyFeedback"; version="0.1.0"; sha256="01qp75c5dsvc4xs1id1yhn81gmjl0hnjz8msf8mkvf4ifqal563f"; depends=[digest shiny]; }; + shinyFiles = derive2 { name="shinyFiles"; version="0.7.1"; sha256="1cbg09l7w2zbgxb4qjm9p873p0lzrihlzsk5xxi3cpxdckn6zsrm"; depends=[fs htmltools jsonlite shiny tibble]; }; shinyHeatmaply = derive2 { name="shinyHeatmaply"; version="0.1.0"; sha256="1vl80vp7yslnh0dvcrpysfn5rndjavphy31y15546q7ax7d0fn6v"; depends=[dplyr DT heatmaply htmltools htmlwidgets jsonlite plotly RColorBrewer readxl shiny viridis xtable]; }; shinyKGode = derive2 { name="shinyKGode"; version="1.0.5"; sha256="004zwz4kqfijzvvwkq8v1gi25w1wrdlg8230g93w36gbi6cl2vk1"; depends=[ggplot2 gridExtra KGode mvtnorm pracma pspline reshape2 shiny shinyjs XML]; }; shinyLP = derive2 { name="shinyLP"; version="1.1.2"; sha256="1sjcll10ciq6pj9h8c6ybjqp8763wc423hddlalcblxxpajf6avz"; depends=[shiny]; }; shinyRGL = derive2 { name="shinyRGL"; version="0.1.0"; sha256="07llg1yg5vmsp89jk60ly695zvxky6n06ar77mjxzlyc294akwmy"; depends=[rgl shiny]; }; shinyShortcut = derive2 { name="shinyShortcut"; version="0.1.0"; sha256="101wz9s4rk7fbaqgm0r2v3v8za20vdxwq4vhkz8xr7y5pr65sxiq"; depends=[]; }; shinyTime = derive2 { name="shinyTime"; version="0.2.1"; sha256="0gpa6kypchvvlq71nnlilciclcrhaa488prjz46sddrsxjy09mp7"; depends=[htmltools shiny]; }; - shinyTree = derive2 { name="shinyTree"; version="0.2.2"; sha256="08n2s6pppbxn23ijp6vms609p4qwlmfh9g0k5hdfqsqxjrz1nndi"; depends=[shiny]; }; + shinyTree = derive2 { name="shinyTree"; version="0.2.6"; sha256="1rw6nwvjsmzfj5fprvg0fasfq079pmdid6vv6rj11wvy7rf40y6j"; depends=[jsonlite shiny]; }; shinyWidgets = derive2 { name="shinyWidgets"; version="0.4.3"; sha256="070yy6vq9w97bz17nxbc2z65v05k50hr24dxfcld994bw0910ldx"; depends=[htmltools jsonlite shiny]; }; shinyaframe = derive2 { name="shinyaframe"; version="1.0.1"; sha256="1flhgsm4q7p5acb41v73pf8ni92y9dwdppxjb9czlz1sxwf03p1s"; depends=[htmltools htmlwidgets shiny]; }; shinyalert = derive2 { name="shinyalert"; version="1.0"; sha256="0ngmpbzw6fw1gs6sv9m3xv2c9bmrxg0bs6lnvxn8hm8cwr4440xi"; depends=[digest shiny]; }; - shinyanimate = derive2 { name="shinyanimate"; version="0.1.0"; sha256="0vbzfcw4d0fvmpdn2pjbsl3najikhm6p60w5vxc0d3x7d8sfq57z"; depends=[shiny]; }; + shinyanimate = derive2 { name="shinyanimate"; version="0.2.0"; sha256="04knbwv8ls23ibwj0gnnpmvnich9nbakx4pjfawghwlm75z9bpdk"; depends=[shiny]; }; shinybootstrap2 = derive2 { name="shinybootstrap2"; version="0.2.1"; sha256="17634l3swlvgj1sv56nvrpgd6rqv7y7qjq0gygljbrgpwmfj198c"; depends=[htmltools jsonlite shiny]; }; shinycssloaders = derive2 { name="shinycssloaders"; version="0.2.0"; sha256="1bpzsm7m7c366sjl1qndp4m5dg2vlm68rjgdy9n1ija9xbp0r2g4"; depends=[digest glue shiny]; }; shinycustomloader = derive2 { name="shinycustomloader"; version="0.9.0"; sha256="1klx71vr26g0gjf6hbiia1qidqii5d467i1sdjvlrg1hxdcggqff"; depends=[glue shiny]; }; - shinydashboard = derive2 { name="shinydashboard"; version="0.7.0"; sha256="10yqcqqcxgfqwkmscqwvvgr710im583qsqnsqkfpisjvkqp10yqb"; depends=[htmltools shiny]; }; - shinydashboardPlus = derive2 { name="shinydashboardPlus"; version="0.5.0"; sha256="0wj388lys7jlh45il6vvln0bpjg1rr91xyypzz55hp46r8z31vl2"; depends=[htmltools shiny shinydashboard]; }; - shinyhelper = derive2 { name="shinyhelper"; version="0.3.0"; sha256="1ypd9wc0h9yfh4awjmjn952g2cfsgcyrm25zk575b17jrkjl5skj"; depends=[markdown shiny]; }; - shinyjqui = derive2 { name="shinyjqui"; version="0.3.0"; sha256="0x7pyb897apmdfpys2kc7bkaa8i4a9rlmdlmlps1n8cxj8kx3dal"; depends=[htmltools htmlwidgets jsonlite shiny]; }; + shinydashboard = derive2 { name="shinydashboard"; version="0.7.1"; sha256="0khac8b27q3swdw07kl609hm0fjfjsjv591b388q99mqqr2rk92i"; depends=[htmltools promises shiny]; }; + shinydashboardPlus = derive2 { name="shinydashboardPlus"; version="0.6.0"; sha256="01yfijdh6ynxzd45bidywvdk0rlx7fzfzq5pbapbvknb7sbasi0y"; depends=[htmltools shiny shinydashboard]; }; + shinyhelper = derive2 { name="shinyhelper"; version="0.3.1"; sha256="1z3wb3vdpz9pcn6rfmpbxky05cf8bxldhpwzldrmhn03spz3n987"; depends=[markdown shiny]; }; + shinyjqui = derive2 { name="shinyjqui"; version="0.3.2"; sha256="1a73vsq1wc3xf14y64hkgnk5jgxj98b8aj3g0fs7mgayar3an5g0"; depends=[htmltools htmlwidgets jsonlite shiny]; }; shinyjs = derive2 { name="shinyjs"; version="1.0"; sha256="113zpijri0l80rlgrvqn6bxk0sdqgl79h7yhja2p76f9dc9i2sr8"; depends=[digest htmltools jsonlite shiny]; }; shinymaterial = derive2 { name="shinymaterial"; version="0.5.3"; sha256="0lddw626mlb6vv474vv22pbjlwl1hgnjs8py3a30d84m94wg7p3z"; depends=[jsonlite shiny]; }; shinystan = derive2 { name="shinystan"; version="2.5.0"; sha256="18alf5kiqw7y2l6m5nxxizwc2znsf9frxfsqhvgcad8hld9cbya5"; depends=[bayesplot colourpicker DT dygraphs ggplot2 gridExtra gtools markdown reshape2 rsconnect rstan shiny shinyjs shinythemes threejs xtable xts]; }; @@ -11208,7 +11705,7 @@ in with self; { showimage = derive2 { name="showimage"; version="1.0.0"; sha256="1c0x3iqjdjsz3cdhc02b3qm2pwxjr1q2k87jwvxj9lnzzw81f1pl"; depends=[png]; }; showtext = derive2 { name="showtext"; version="0.5-1"; sha256="0zb9h6frw580cql0nbkvfb0jajq6k4yhqaifvz8cpysd32dk35wm"; depends=[showtextdb sysfonts]; }; showtextdb = derive2 { name="showtextdb"; version="2.0"; sha256="1qwwj9x2jvadvwn60h75k99c9xi7yhqjsgaakahz5paxgj583bsh"; depends=[sysfonts]; }; - shp2graph = derive2 { name="shp2graph"; version="0-4"; sha256="13hpj2yjai3yf8q6dnhpdqzsw4nkdpi06fxxdgn82ycx0sp7zk4v"; depends=[igraph maptools sp]; }; + shp2graph = derive2 { name="shp2graph"; version="0-5"; sha256="1l9mg98hkb0bvr5dzd2p26g8mw5hqjxrym2gmbm10kyapvccfk56"; depends=[igraph maptools sp]; }; shrink = derive2 { name="shrink"; version="1.2.1"; sha256="0pd967wsys8fd7gyvr9y08km118yamfk5c1a1i2k8nr2ifpqmy0w"; depends=[MASS mfp rms survival]; }; shuffle = derive2 { name="shuffle"; version="1.0.1"; sha256="0aqb11h340picx7z2jg3k46l3pr6fkknlpyzc0z89hhrc90pss48"; depends=[]; }; shuffleCI = derive2 { name="shuffleCI"; version="0.1.0"; sha256="1n9k28m1fcnw1my9a7v0gy9waygd48lab45vj9k2wwijbc325zai"; depends=[plotrix]; }; @@ -11216,25 +11713,26 @@ in with self; { siar = derive2 { name="siar"; version="4.2"; sha256="1c4z72jr81dzkp9xqyrrkwjsalvvksl67pnbaadkc52v84fhzx3r"; depends=[bayesm coda hdrcde MASS mnormt spatstat]; }; sicegar = derive2 { name="sicegar"; version="0.2.2"; sha256="0fnr0wv8zbhs2i5y1kqyvhm0kzisc68ys3iy0wxwbdj3bnfgzj70"; depends=[dplyr fBasics ggplot2 minpack_lm]; }; sideChannelAttack = derive2 { name="sideChannelAttack"; version="1.0-6"; sha256="1xcsy1h8gc8a4f9nzs7zv8x6v55g1pg8vy1kg64iqxm0gnz2f20l"; depends=[ade4 corpcor infotheo MASS mmap]; }; - sidier = derive2 { name="sidier"; version="4.0.2"; sha256="1zzlgd20aw2asbsb3g9m5gvlmmgkai3bqrxyn48mphc2ncl4y7w0"; depends=[ape ggmap ggplot2 gridBase igraph network]; }; + sidier = derive2 { name="sidier"; version="4.0.3"; sha256="0pfzx0a5f597iqigq9xidm9b9xv18zaiqa35yp4xlk1y7gv0nj6c"; depends=[ape ggmap ggplot2 gridBase igraph network]; }; sidrar = derive2 { name="sidrar"; version="0.2.4"; sha256="1zwxafc4xaa4386a9jdg3gwflpdxql3f33bkqx1l2yl30x3517rw"; depends=[dplyr magrittr RCurl rjson rvest stringr tidyr xml2]; }; sievetest = derive2 { name="sievetest"; version="1.2.3"; sha256="17qrm7axvlr2yzp8brbibp26f8qdpqm85hc2kjzxm5zqwfvd6dfs"; depends=[]; }; sig = derive2 { name="sig"; version="0.0-5"; sha256="084wwpj5mnmq4k98ijbv23z80sj4axadc7c6hn3917dazsaa6ngn"; depends=[]; }; - sigQC = derive2 { name="sigQC"; version="0.1.20"; sha256="1s0z5pd8183q1v5pn07zwxckafhq0rhh7fzzny7xpjs79r50l9ii"; depends=[biclust circlize class cluster ComplexHeatmap fmsb gplots gridGraphics GSVA KernSmooth lattice MASS mclust moments nnet RankProd]; }; + sigQC = derive2 { name="sigQC"; version="0.1.21"; sha256="0794xvkz4fd81gqqpxzn5njv3d34nfxy0jl5zpixlnz0ap4c9vhx"; depends=[biclust circlize class cluster ComplexHeatmap fmsb gplots gridGraphics GSVA KernSmooth lattice MASS mclust moments nnet RankProd]; }; sigclust = derive2 { name="sigclust"; version="1.1.0"; sha256="0151v7lr4n4yyn93j0s06gzc9jh9xhdgvfw6kvpfy24jl6wdii7g"; depends=[]; }; sigmaNet = derive2 { name="sigmaNet"; version="1.1.0"; sha256="1i0xikwad9kiyrqxi1klkc4h4hyqfkxr388sw4mrx9pswfpbv3xr"; depends=[htmlwidgets igraph jsonlite RColorBrewer]; }; + sigmajs = derive2 { name="sigmajs"; version="0.1.1"; sha256="05fkwm0lkk3mg59ldc68y8sc58223zw1c3vgvxn09100bf6kfvyr"; depends=[crosstalk dplyr htmltools htmlwidgets igraph jsonlite magrittr purrr shiny]; }; sigmoid = derive2 { name="sigmoid"; version="0.3.0"; sha256="1sa6nmip3fizdk3r47pvx0h3qldn267arpmid0wa1pb7k5j2g682"; depends=[]; }; signal = derive2 { name="signal"; version="0.7-6"; sha256="1vsxramz5qd9q9s3vlqzmfdpmwl2rhlb2n904zw6f0fg0xxjfq3b"; depends=[MASS]; }; signalHsmm = derive2 { name="signalHsmm"; version="1.4"; sha256="1plyvx0pdid4zydxjwph6v96c8ilzgn55vcdszkslp3a4s2sns65"; depends=[Rcpp seqinr shiny]; }; signmedian_test = derive2 { name="signmedian.test"; version="1.5.1"; sha256="05n7a4h2bibv2r64cqschzhjnm204m2lm1yrwxvx17cwdp847hkm"; depends=[]; }; - sigora = derive2 { name="sigora"; version="2.0.1"; sha256="1sgjafr2f7carwnvp0vsvp80jn2bzwlkay38ch63qk9gapsh4imh"; depends=[]; }; - sigr = derive2 { name="sigr"; version="0.2.7"; sha256="0fdqlwblinb2dqlmcr7p679ppjh73aykgsmjffyaz0liiyk0zsc7"; depends=[wrapr]; }; + sigora = derive2 { name="sigora"; version="3.0.1"; sha256="1pz9jibxjvvbc0wmd7sj2fss6hd8h1fvcg8vg72qwqvfy3f9jdry"; depends=[]; }; + sigr = derive2 { name="sigr"; version="1.0.2"; sha256="1477xc3ba4zm0z73aqyrqd47x84184vp4v0zkzfxjw4y7rkw1anh"; depends=[wrapr]; }; siland = derive2 { name="siland"; version="1.0"; sha256="0zqwslg0vak22q475azwank81wr4kfx33h21w84lsg7iihrb08nv"; depends=[lme4 raster rgdal sp]; }; sim1000G = derive2 { name="sim1000G"; version="1.39"; sha256="1qxl7lsdsd4skn6x8iw7jx60ly0rwsj27yh5yiqmhxa34jpyjg0m"; depends=[hapsim MASS readr stringr]; }; simEd = derive2 { name="simEd"; version="1.0.3"; sha256="1yq0qblrz0zddx682rzwdaa0k0r223i123la7wbp73spnn38g4br"; depends=[rstream]; }; simFrame = derive2 { name="simFrame"; version="0.5.3"; sha256="154d4k6x074ib813dp42l5l8v81x9bq2c8q0p5mwm63pj0rgf5f3"; depends=[lattice Rcpp]; }; simIReff = derive2 { name="simIReff"; version="1.0"; sha256="0yi43splda8chnh4bq5x6chbrl5c0y9sv1k2m31763da0czayall"; depends=[bde extraDistr ks MASS np rvinecopulib truncnorm]; }; - simLife = derive2 { name="simLife"; version="0.3"; sha256="0bqhixr4zg7mwgxdsjk0h5a82dyfkhiv9xafw43w2bpnmyxywdia"; depends=[splancs unfoldr]; }; + simLife = derive2 { name="simLife"; version="0.5.1"; sha256="16idgxvc06m10k67y86agcdsv79ndi1d05zrajlnd5fap7n1w3d5"; depends=[splancs]; }; simMP = derive2 { name="simMP"; version="0.17.3"; sha256="1pzg79dd08ds3pfzxnk9h95gaibicv00mnm0jb4i8v5is4gzrdhr"; depends=[Biostrings BSgenome doParallel foreach GenomeInfoDb GenomicRanges IRanges XVector]; }; simMSM = derive2 { name="simMSM"; version="1.1.41"; sha256="04icijrdc269b4hwbdl3qz2lyxcxx6z63y2wbak1884spn6bzbs8"; depends=[mvna survival]; }; simPATHy = derive2 { name="simPATHy"; version="0.2"; sha256="0ai5wmjz8k0glbwkclgg3m3ncsjghja4iys2mn1psn3r8gxk79yc"; depends=[ggm graph gRbase htmlwidgets igraph mvtnorm qpgraph R_utils shiny shinydashboard]; }; @@ -11244,18 +11742,18 @@ in with self; { simTool = derive2 { name="simTool"; version="1.1.0"; sha256="121nv0s14jzxgcmj2fsj1k0msziknwbix2a49f7igic2l8yv869p"; depends=[dplyr plyr purrr reshape tibble tidyr]; }; simba = derive2 { name="simba"; version="0.3-5"; sha256="14kqxqavacckl5s1518iiwzrmlgbxz1lxy33y8c9qq7xaln41g9h"; depends=[vegan]; }; simboot = derive2 { name="simboot"; version="0.2-6"; sha256="0bgibrqb9j62p1chldi1lvdsgc6sgsr7afyq4lvyrc2h861f3j9d"; depends=[boot mvtnorm]; }; - simcausal = derive2 { name="simcausal"; version="0.5.4"; sha256="19mqabxqz2mvfhslbln5vsnlrnmgcfmgp7ypf5k2yd03755b0k4b"; depends=[assertthat data_table igraph Matrix R6 stringr]; }; simctest = derive2 { name="simctest"; version="2.5"; sha256="038ipxww0n09sh8al5isbm1fikr8kazwxn9cj2d0wgm6cdpy681n"; depends=[]; }; simdistr = derive2 { name="simdistr"; version="1.0.0"; sha256="0r7qfrq4vcjqrzajc6xmn0rrkinqwbr8cqghgp4iklbhsjbk2xfl"; depends=[]; }; simecol = derive2 { name="simecol"; version="0.8-12"; sha256="06zw9xhj8jwhmqwxxbj8hgz9cxrw1b4syy6z79aawv9cg1bnwfhf"; depends=[deSolve minqa]; }; simest = derive2 { name="simest"; version="0.4"; sha256="1wp08dkbshn5parq69d7iizp4g16qzpdim37kcg09pgsc3aghwaj"; depends=[cobs nnls]; }; simex = derive2 { name="simex"; version="1.7"; sha256="0dmyxhg3bk23y08xbgwlg791pcl3131im3jkh9x5pjqczfjvim0a"; depends=[]; }; simexaft = derive2 { name="simexaft"; version="1.0.7"; sha256="13w9m35qrrp8kkz4gqp7fg9jv8fs99y19n21bdxsd3f5mlkbvqgl"; depends=[mvtnorm survival]; }; - simglm = derive2 { name="simglm"; version="0.7.0"; sha256="1p29v8y3ahdkid35ky9sbj5227cvj0nn0ljzjpliyqwbkmxpncmj"; depends=[broom dplyr Matrix purrr rlang]; }; - simmer = derive2 { name="simmer"; version="3.8.0"; sha256="0d1m93ffnajvkf3wiqvbim5l1i10k30pr702wyazrg6b0c2kybkf"; depends=[BH codetools magrittr R6 Rcpp]; }; - simmer_bricks = derive2 { name="simmer.bricks"; version="0.1.0"; sha256="1sb1ayh56sbgs4p0r3frjjfn4vcdr43xm85lvb9aqk3wmj2lddqy"; depends=[simmer]; }; - simmer_plot = derive2 { name="simmer.plot"; version="0.1.13"; sha256="0afp4il95dmdgw815rk0c3cyf56gli237v4i716l4agag5l1rp60"; depends=[DiagrammeR dplyr ggplot2 scales simmer tidyr]; }; + simglm = derive2 { name="simglm"; version="0.7.1"; sha256="1y5j0a09svxq7gygw02l906pgs0lwv26qsikjy8vf5rmds58mcfd"; depends=[broom dplyr Matrix purrr rlang]; }; + simmer = derive2 { name="simmer"; version="4.0.1"; sha256="1vsg4540id6006pp7wdfwz3s7ny6adc3z9ynaw1qad2z0xnxcn6y"; depends=[BH codetools magrittr R6 Rcpp]; }; + simmer_bricks = derive2 { name="simmer.bricks"; version="0.2.0"; sha256="1i4vhklky7d837z35859jp5q43aabcw5zk3936017awdsn4fkn9r"; depends=[simmer]; }; + simmer_plot = derive2 { name="simmer.plot"; version="0.1.14"; sha256="0w72064h8s6b2fhz5nv3i6c86wvcxfvhybb96vh5ykr1xkqpybbh"; depends=[DiagrammeR dplyr ggplot2 scales simmer tidyr]; }; simmr = derive2 { name="simmr"; version="0.3"; sha256="18ycrd7qbz7frvd3bgbqaaapslw1jw89fy3np5qyb9sswyk08w9m"; depends=[boot coda compositions ggplot2 MASS reshape2 rjags viridis]; }; + simode = derive2 { name="simode"; version="1.1.1"; sha256="1v72ja8jf33biljqc64s35iv2q8igk62z852y5fxwssckm1nhcdd"; depends=[deSolve pracma quadprog]; }; simpleCache = derive2 { name="simpleCache"; version="0.3.1"; sha256="14jrsfxcrndfgi7yl5frfsyixxkhagc7cfav8h6mf6apfxx0v1ls"; depends=[]; }; simpleNeural = derive2 { name="simpleNeural"; version="0.1.1"; sha256="0rm6kvz1mppvgcvwsgg3nz6ci37l95ins64g0jh4rw6lfmy0grjc"; depends=[]; }; simpleRCache = derive2 { name="simpleRCache"; version="0.3.2"; sha256="0ldmxa5rw1kcb24swnk8s471ww11jfbscynaahnnsi0zzqmhwirk"; depends=[digest]; }; @@ -11268,43 +11766,45 @@ in with self; { simrel = derive2 { name="simrel"; version="1.0-1"; sha256="0905rjqh8c08vyg090h0i7sx89vdryignslldzfz2r5yrszl4ga8"; depends=[FrF2 sfsmisc]; }; simsalapar = derive2 { name="simsalapar"; version="1.0-10"; sha256="1q7kh44xl7q48vpqbyrp85my6x97l4fqq36bry8vg3k5riihirzf"; depends=[colorspace gridBase sfsmisc]; }; simsem = derive2 { name="simsem"; version="0.5-14"; sha256="1sg1zmngpviqpbsy8kxnw4f4x93gy3gh02ykmcw8j9falfnd7g6i"; depends=[lavaan]; }; - simstudy = derive2 { name="simstudy"; version="0.1.9"; sha256="0lix46xi02sfkd3nslqgcbnyfpgqhdz8kj5hh85b6ajly4hgw103"; depends=[data_table mvnfast Rcpp]; }; + simstandard = derive2 { name="simstandard"; version="0.1.0"; sha256="09jggrcfjjyr248rjr3nfrwmpr843z8h379cyxkl302s9g1qz57s"; depends=[lavaan mvtnorm tibble]; }; + simstudy = derive2 { name="simstudy"; version="0.1.10"; sha256="0wc3464np94m429jrwdna3im1z2r2yq2xxxr212ndw6is0bb5w9s"; depends=[data_table mvnfast mvtnorm Rcpp]; }; simsurv = derive2 { name="simsurv"; version="0.2.2"; sha256="1dfn156mm08l1cyp6wy69rd9a2lyy7qlbqa59jq35n9fhpjbrif0"; depends=[]; }; simtimer = derive2 { name="simtimer"; version="3.0.0"; sha256="0hfp652s97dz07fs92gfsaiwd6pwg95qsvr6qjwj1k5d3h6hzf8y"; depends=[]; }; - simukde = derive2 { name="simukde"; version="1.0.0"; sha256="1v4shnyba05mh0qaylivcjby6niz2yc4zb67qfbycifbj0cl14vh"; depends=[ks mvtnorm]; }; + simukde = derive2 { name="simukde"; version="1.1.0"; sha256="0g4qb57q1g9ixl70zwiw8y934gcr421xmz4dl515lxzfzk0605fc"; depends=[ks MASS mvtnorm]; }; simulator = derive2 { name="simulator"; version="0.2.0"; sha256="18x0c9bf9anbykq9f46fxnnx7g36bh01s4cdmrn7mdygs6ac9c8z"; depends=[magrittr]; }; simule = derive2 { name="simule"; version="1.3.0"; sha256="0jzyk1r2jfs7qivmy9x44c5bagy55jpy3hf0xpl9xnk409c3y2wd"; depends=[igraph lpSolve pcaPP]; }; sinaplot = derive2 { name="sinaplot"; version="1.1.0"; sha256="0zfq6l8wjvdj7rndsfyh0a2xjlxmn2ij1q50hg3xjfpwrjxcsck8"; depends=[plyr]; }; - sinew = derive2 { name="sinew"; version="0.3.5.1"; sha256="0fp5afjnkah3ig1c1fy23zlfxkfg590jai8iqf5s8wl8r4s0ywgm"; depends=[miniUI rstudioapi shiny sos stringi yaml]; }; + sindyr = derive2 { name="sindyr"; version="0.2.1"; sha256="0977qb9f2247y6bzlsp9lqfbmncq2prqr57myrgd6f60jc09n3mj"; depends=[arrangements crqa igraph matrixStats pracma]; }; + sinew = derive2 { name="sinew"; version="0.3.8"; sha256="1ggx7wgmgnsv69nnc55mg9g7rzjv5m23sygz7x8q68pybmjr7fc1"; depends=[cli crayon miniUI rematch2 rstudioapi shiny sos stringi yaml]; }; sinib = derive2 { name="sinib"; version="1.0.0"; sha256="08x2a5hn41vcsai3r36w1kgzka4ks53pkp6dxn90bsqh40ydb0db"; depends=[]; }; - siplab = derive2 { name="siplab"; version="1.2"; sha256="0r7gk9qsmbc3ln67cb8p87bq3s2rx6fbavlly1fpzqqv2isf5pq9"; depends=[spatstat]; }; + siplab = derive2 { name="siplab"; version="1.3"; sha256="1wl7i8i24mwmndkfjbk38kn49x4hrcs52sq1hfw8crqa20knaf12"; depends=[spatstat]; }; sirad = derive2 { name="sirad"; version="2.3-3"; sha256="0vhmk2fmq4797gj6c8803zw1ipmdxfvdfgi2bygzxbn5bqd4da2n"; depends=[raster zoo]; }; - sirt = derive2 { name="sirt"; version="2.6-9"; sha256="06iz4dxlsxdfgmn52pyiyng0bbxffc5b7sszwbzq5i64ad1j0d48"; depends=[CDM coda lavaan lavaan_survey MASS mirt mvtnorm Rcpp RcppArmadillo sfsmisc survey TAM]; }; + sirt = derive2 { name="sirt"; version="2.7-50"; sha256="1l1y65qr1ziapszm4n309q8gahcf55jfi7i2jj5v8wrg2b3g660w"; depends=[CDM coda lavaan lavaan_survey MASS mirt mvtnorm Rcpp RcppArmadillo sfsmisc survey TAM]; }; sisVIVE = derive2 { name="sisVIVE"; version="1.4"; sha256="1vh53irxgk8ahw52cdqbbm89dvmzyf54izg4lm8a3v92k5p6nzwz"; depends=[lars]; }; sisal = derive2 { name="sisal"; version="0.46"; sha256="00szc3l69i0cksxmd0lyrs4p6plf05sl4vxs3nl4gkbja5y4lvpc"; depends=[boot digest lattice mgcv R_matlab R_methodsS3]; }; sisus = derive2 { name="sisus"; version="3.9-13"; sha256="0lz9ww07dvdx6l3k5san8gwq09hycc3mqwpgzmr2ya9z8y27zadr"; depends=[coda gdata gtools MASS moments polyapost rcdd RColorBrewer]; }; sitar = derive2 { name="sitar"; version="1.1.0"; sha256="1a2x6igzq0i1vac54xyiq14vzx0m20431nv7aw0anv0lss7xy6r8"; depends=[dplyr nlme quantreg rlang tibble]; }; sitmo = derive2 { name="sitmo"; version="2.0.0"; sha256="11mzkdh01cfazxqxxlhm0ifbiggpw54k5n9qpz3vxbq10v9720h9"; depends=[Rcpp]; }; sitools = derive2 { name="sitools"; version="1.4"; sha256="0c0qnvsv06g6v7hxad96fkp9j641v8472mbphvaxa60k3xc7ackb"; depends=[]; }; - sitree = derive2 { name="sitree"; version="0.1-3"; sha256="1rs109sxvmsbx8w75iifbc14z685k9brk7fgfy0mjgkcxszafjwk"; depends=[data_table lattice latticeExtra]; }; + sitree = derive2 { name="sitree"; version="0.1-4"; sha256="0ypn9y1kighvh17yj1v83dkj973vqgzbr5lmkl761lam3m1fglq0"; depends=[data_table lattice latticeExtra]; }; sitreeE = derive2 { name="sitreeE"; version="0.0-2"; sha256="0w4gbdjphanfy614jv4zp70kl901zz5hblk35lyv7rjxifq5bpx0"; depends=[sitree]; }; sivipm = derive2 { name="sivipm"; version="1.1-3"; sha256="1l0j1bi38s09ax4kwikk615lyd074gzg1aa1j2jfmhr3igannm3z"; depends=[seqinr]; }; - sizeMat = derive2 { name="sizeMat"; version="0.3.0"; sha256="0766wxcc1980ivlib2saagl20y9dm0ar7i43qcqk2jpdbbaky33z"; depends=[MASS matrixStats mcmc MCMCpack]; }; - sjPlot = derive2 { name="sjPlot"; version="2.4.1"; sha256="0aazxrqsbp5jsd5yfm6hrx17rmlqbh5vs314xms7g620aj383zrh"; depends=[arm broom dplyr effects forcats ggeffects ggplot2 glmmTMB knitr lme4 magrittr MASS merTools modelr nlme psych purrr rlang scales sjlabelled sjmisc sjstats tibble tidyr tidyselect]; }; + sizeMat = derive2 { name="sizeMat"; version="1.0.0"; sha256="05dw4hgpw5msgy5cabf5dixr6ma66i9wz9wlajihqkpbg134jz1k"; depends=[MASS matrixStats mcmc MCMCpack]; }; + sjPlot = derive2 { name="sjPlot"; version="2.6.1"; sha256="13qvw2s3r96qfi8kfsn76m050ccnmckl31a9qv94xws8da99v2fk"; depends=[broom dplyr forcats ggeffects ggplot2 glmmTMB knitr lme4 magrittr MASS modelr nlme psych purrr rlang scales sjlabelled sjmisc sjstats tidyr]; }; sjdbc = derive2 { name="sjdbc"; version="1.6.0"; sha256="17ncgj2s2pjn3w3c1dgxv8g7y17h4p78iic86gsj2ahn0xpsmkcc"; depends=[rJava]; }; - sjlabelled = derive2 { name="sjlabelled"; version="1.0.11"; sha256="1bkjv36v7vwvwfal9qwfyvirnv72r080cq333q161bnq6vcp648y"; depends=[broom dplyr haven magrittr prediction purrr rlang snakecase tibble tidyselect]; }; - sjmisc = derive2 { name="sjmisc"; version="2.7.3"; sha256="1d588cpgnyhxyclchiv5fx0vi155mkh7ac252swg5fp4752skff7"; depends=[broom crayon dplyr haven magrittr pillar purrr rlang sjlabelled stringdist stringr tibble tidyr tidyselect]; }; - sjstats = derive2 { name="sjstats"; version="0.15.0"; sha256="1gy37k3ziyxlf336b9s5j2shp9qapwnr8ya8sfjyrs56naai411b"; depends=[bayesplot broom coin crayon dplyr emmeans glmmTMB lme4 lmtest magrittr MASS Matrix modelr nlme prediction purrr pwr rlang sandwich sjlabelled sjmisc tibble tidyr tidyselect]; }; + sjlabelled = derive2 { name="sjlabelled"; version="1.0.14"; sha256="0ayfzhm9bwjfaarq5z0gvn9kapjwj3532azgin97nr5fnjdhvgaw"; depends=[broom dplyr haven magrittr prediction purrr rlang snakecase]; }; + sjmisc = derive2 { name="sjmisc"; version="2.7.5"; sha256="05fjqfr2rfk11065zqkzb9mbqd6mgdkw9jdhq3by425a7f8m2dcg"; depends=[broom crayon dplyr haven magrittr purrr rlang sjlabelled stringdist stringr tidyr]; }; + sjstats = derive2 { name="sjstats"; version="0.17.1"; sha256="0s9b0xr8gmcm0kh48jkwk8ns0lqknd8kpys4f7czf0xwzmcx2n1z"; depends=[bayesplot broom coin crayon dplyr emmeans glmmTMB lme4 magrittr MASS Matrix modelr nlme purrr pwr rlang sjlabelled sjmisc tidyr]; }; skda = derive2 { name="skda"; version="0.1"; sha256="0a6mksr1d0j3pd0kz4jb6yh466gvl4fkrvgvnlmvivpv6b2gqs3q"; depends=[]; }; skeleSim = derive2 { name="skeleSim"; version="0.9.8"; sha256="1wxdl30cy8vr1cd0wcjxyklp6crw4bv8r77ma2dkzmxm2ma5jw92"; depends=[adegenet ape hierfstat igraph markdown pegas reshape2 rmetasim shiny shinyFiles strataG swfscMisc]; }; skeletor = derive2 { name="skeletor"; version="1.0.4"; sha256="1jfbfbkjx8mdwamsrkhvcnyn470in702vgcyw3g2dbgs84gl29q8"; depends=[]; }; skellam = derive2 { name="skellam"; version="0.2.0"; sha256="0r5wbs5h7xc3k2vjxd4axwnxr9cmwm008fcyj1vyixkg8fa680gx"; depends=[]; }; skewt = derive2 { name="skewt"; version="0.1"; sha256="1xm00zfzjv53cq9drfcx7w2ri5dwsq7kajrk2hc1mvw0b6s4x2ix"; depends=[]; }; skimr = derive2 { name="skimr"; version="1.0.3"; sha256="1c6szryq4w6gipmz7s5nn5936dbwly013czlcl6fky2yrhhjf25v"; depends=[cli dplyr knitr magrittr pander purrr rlang stringr tibble tidyr tidyselect]; }; - sklarsomega = derive2 { name="sklarsomega"; version="1.0"; sha256="0zyaycsbi4nnqx80lvipa43zphc032gw8bmxrx4blqb67xlfhp98"; depends=[hash LaplacesDemon Matrix numDeriv spam]; }; + sklarsomega = derive2 { name="sklarsomega"; version="2.0"; sha256="05ar391bsaixv83dah3qzfi50avsjhn85niyq5n05sb8d5943z9h"; depends=[extraDistr hash LaplacesDemon Matrix mcmcse numDeriv spam]; }; skm = derive2 { name="skm"; version="0.1.5.4"; sha256="06g3bdncq2r56d8k3dr87gqnibypbsps0gj4jxkw9q1sq1yaff3v"; depends=[data_table magrittr plyr Rcpp RcppArmadillo RcppParallel]; }; skmeans = derive2 { name="skmeans"; version="0.2-11"; sha256="1a8nwlym6pf0z13nnw1id2wls9lq788860yhjaqd56c3slzfsymn"; depends=[clue cluster slam]; }; - skpr = derive2 { name="skpr"; version="0.49.1"; sha256="0qsqa9lbrch5vs0hfp6k8vcrh0xgcjm23lpi5prrdh3h93lqjhxf"; depends=[doParallel doRNG foreach iterators kableExtra knitr lme4 nlme Rcpp RcppEigen rintrojs shiny shinythemes survival]; }; + skpr = derive2 { name="skpr"; version="0.56.1"; sha256="110qlb4ksp7c6ipv2w445ziwykqqbvs188gkg6sclb4rnzjy4lix"; depends=[car doParallel doRNG foreach future iterators kableExtra knitr lme4 magrittr nlme promises Rcpp RcppEigen rintrojs shiny shinyjs shinythemes survival viridis]; }; skynet = derive2 { name="skynet"; version="1.2.2"; sha256="1k6909fm40g6ianzjzbrv93x0fx2l8lnwl38krb7r50g1yk7lnrd"; depends=[data_table dplyr ggplot2 ggrepel igraph maps stringr]; }; skyscapeR = derive2 { name="skyscapeR"; version="0.2.2"; sha256="08h3vvn9zglw3xrl0xpyj95r1n3v6lk835a4nbanxdvi21mgpi77"; depends=[astrolibR doParallel foreach MESS numDeriv oce plotrix png pracma RColorBrewer rootSolve]; }; slackr = derive2 { name="slackr"; version="1.4.2"; sha256="1vm2h5fzcss3xx1annx68wrvv6c0s6h2ci0bipxmdl9amdaqw85w"; depends=[dplyr ggplot2 httr jsonlite]; }; @@ -11315,22 +11815,24 @@ in with self; { slickR = derive2 { name="slickR"; version="0.2.4"; sha256="14y4rwa450xqw6prdgp2l7xs9vv6zqbxwg7hc3hjgq47jy8qsdm1"; depends=[base64enc htmltools htmlwidgets xml2]; }; slim = derive2 { name="slim"; version="0.1.1"; sha256="0x9bk6w6lmw15s85gw9g8d1wlb57kkvnmx1wsyasn93x9llkjva1"; depends=[data_table MASS]; }; slimrec = derive2 { name="slimrec"; version="0.1.0"; sha256="1qzcvk7z8y11hwmybvppk1gf8di596zxy7qs22fclp6h6y18s377"; depends=[assertthat bigmemory glmnet Matrix pbapply]; }; + slouch = derive2 { name="slouch"; version="2.1.1"; sha256="1pzvlbqyby12m0pfspbih222mbhdcgmians8khd3yj9570djxqa7"; depends=[ape memoise]; }; slowraker = derive2 { name="slowraker"; version="0.1.1"; sha256="0glc3ldvbqkvzfvhs4s5mzx1kfz05px4k7rx5jfp9dm9d0gfpvsx"; depends=[NLP openNLP SnowballC]; }; slp = derive2 { name="slp"; version="1.0-5"; sha256="0i9iv0s1wdp9cyzr8qixh6c7qvrj025vll13gyf8dfbidrp6hryl"; depends=[mgcv]; }; - sm = derive2 { name="sm"; version="2.2-5.5"; sha256="1rw2mxygxsmk8mn4wag1ppjgzk0rlvh6zd8q02qrhjrn9jhi5qj3"; depends=[]; }; + sm = derive2 { name="sm"; version="2.2-5.6"; sha256="0c4whcx879gb4lwvqnzxl5n9xgpcqh2c54ip9ami3mwfprzcv45q"; depends=[]; }; smaa = derive2 { name="smaa"; version="0.3-0"; sha256="0y7j4q147fdk7fffyinc803mfzzsmcdfx8bp695w3wkq1wwy9kyl"; depends=[]; }; smac = derive2 { name="smac"; version="1.0"; sha256="1inn7i5k0q5vln24kazh3gl3szf6lxwnjr2rw70jcyn9dr9iy952"; depends=[]; }; smacof = derive2 { name="smacof"; version="1.10-8"; sha256="1q3xpfpcgsm98gzavkpsmsidch7sdxwr6iyqpz7cm8qiki8jgjzb"; depends=[candisc colorspace ellipse Hmisc MASS nnls plotrix polynom weights wordcloud]; }; smacpod = derive2 { name="smacpod"; version="2.0.4"; sha256="0dh8n3rxrffr09a8q7vdlin9hq5f2v0hjjjqsmzgwf7ln1b9wcr1"; depends=[abind pbapply plotrix sp spatstat]; }; smallarea = derive2 { name="smallarea"; version="0.1"; sha256="0jcv0xbh8v4g6zxxs4yyd0divwzk9d2w7g01r4s65khxvy3av7yx"; depends=[MASS]; }; - smam = derive2 { name="smam"; version="0.3-0"; sha256="1sdr0ki2y9smiwfglgh97kj6y0n1z3blyyxk823xp3467byk1rnb"; depends=[Matrix numDeriv Rcpp]; }; - smapr = derive2 { name="smapr"; version="0.1.2"; sha256="0j4ddlj5km0hmz9q61l93rm6gc7x6iyfgq1fbkjajmij0099mscr"; depends=[httr rappdirs raster rhdf5 rvest xml2]; }; + smam = derive2 { name="smam"; version="0.4.0"; sha256="00fgjcx0pqj03f4bhbzdcj8194l0y1rp34qp51p5vnnagdksj11j"; depends=[doParallel foreach Matrix nloptr numDeriv Rcpp RcppGSL RcppParallel]; }; + smapr = derive2 { name="smapr"; version="0.2.0"; sha256="13nvcfz4c2ipfb6ad9x59fm950prpdd991lzvszkdhsp53d0z9l4"; depends=[httr rappdirs raster rhdf5 rvest xml2]; }; smart = derive2 { name="smart"; version="1.0.1"; sha256="0ki3qn71zrw0nyv395qijcwahnxyv1p21j8x6cxr9spah2wzz8lb"; depends=[elasticnet gplots gtools igraph Matrix pcaPP PMA]; }; + smartdata = derive2 { name="smartdata"; version="1.0.0"; sha256="011yhhyfczzp90bzzfy6zh9nl7ikr6g7d0nghx63qvh89i823g2s"; depends=[adaptiveGPCA Amelia Boruta checkmate class clusterSim denoiseR discretization DMwR FSelector functional imbalance infotheo lle magrittr mice missForest missMDA MVN NoiseFiltersR outliers RoughSets unbalanced VIM]; }; smartsizer = derive2 { name="smartsizer"; version="1.0.1"; sha256="0m474f6dz0izwdh2xvgx6shsbkpr969ckcld56d7c589kjhapbrl"; depends=[MASS]; }; smatr = derive2 { name="smatr"; version="3.4-8"; sha256="0qqqbg65flxh48sw7x90zvgzbpcfzb1811h0pz3zlhdw9a7khs9n"; depends=[]; }; - smbinning = derive2 { name="smbinning"; version="0.6"; sha256="13izdq2pl7hi8ppzmpmiiz4pmc43m63ixjrbj9lwa371vx60ndmh"; depends=[Formula gsubfn partykit sqldf]; }; + smbinning = derive2 { name="smbinning"; version="0.7"; sha256="1pf74ys0jgm160zrwf8kv5j5bgb4i9z8cayirfxhwjdw9rc0w61p"; depends=[Formula gsubfn partykit sqldf]; }; smcUtils = derive2 { name="smcUtils"; version="0.2.2"; sha256="0d1kmg386j0zrpp8vgxjwvpf1i25l86xrh82767xkp0n9qj8srwq"; depends=[]; }; - smcfcs = derive2 { name="smcfcs"; version="1.3.0"; sha256="1860qzhfpdr78a8ha8537izbkm0dx9j63l9fv6mswcs5sjl25i09"; depends=[MASS survival VGAM]; }; + smcfcs = derive2 { name="smcfcs"; version="1.3.1"; sha256="0f3sd4pz46wjpyw932qrxw4hr3fmdbjrhcrgfmvm89hp0r09vz74"; depends=[MASS survival VGAM]; }; smco = derive2 { name="smco"; version="0.1"; sha256="1sj3y1x6pc32cwzyhn9gaxs964xh5xl4vw08hsa8kfcxhh2r0s99"; depends=[]; }; smcure = derive2 { name="smcure"; version="2.0"; sha256="1j7fxnb0sx57a0l929c3haz4f1y829ymlq0cvdh0cia4qp6ydv60"; depends=[survival]; }; smdata = derive2 { name="smdata"; version="1.2"; sha256="1p26b46kg4hmhs2fl9h9vchar00llqv58ylx438bjgzz4f229qvr"; depends=[]; }; @@ -11338,15 +11840,15 @@ in with self; { smds = derive2 { name="smds"; version="1.0"; sha256="0aqf3wfn6mlsl8a32gaf9qdpyxwsx19g6mma8qzgaysdmk6vhbpd"; depends=[MASS]; }; sme = derive2 { name="sme"; version="1.0.2"; sha256="0gszpy1sx2qsypps3iza79sab475wcrscl7wnbbrv97a3ry0ybp6"; depends=[lattice]; }; smerc = derive2 { name="smerc"; version="0.4.5"; sha256="1455fjfihznzivz80jad7pyfjms8yyvmsz6wqdvqv3n6dsyr8fvb"; depends=[fields maps matrixStats smacpod sp SpatialTools spdep]; }; - smfsb = derive2 { name="smfsb"; version="1.1"; sha256="0khd23b6k9zgxz2x6g6c6k2g32mbpli32izdq6fgk1a990kdsp6j"; depends=[]; }; - smicd = derive2 { name="smicd"; version="1.0.1"; sha256="05v1lwl2jacrzd4fcp7d386gd70q1kcrr96pnq39zdsniq2j7dn9"; depends=[formula_tools ineq laeken lme4 MuMIn mvtnorm spatstat truncnorm weights]; }; + smfsb = derive2 { name="smfsb"; version="1.3"; sha256="1328w7zpwd3nam6ha4bh14g919jjl87v323ijmbp1j71gc64nn2i"; depends=[abind]; }; + smicd = derive2 { name="smicd"; version="1.0.2"; sha256="1hylmii2nd0v2k8zksrd0bh882mqj16vdrxmal2lv79x3fb7jpkb"; depends=[formula_tools ineq laeken lme4 MuMIn mvtnorm spatstat truncnorm weights]; }; smirnov = derive2 { name="smirnov"; version="1.0-1"; sha256="09mpb45wj8rfi6n6822h4c335xp2pl0xsyxgin1bkfw97yjcvrgk"; depends=[]; }; smnet = derive2 { name="smnet"; version="2.1.1"; sha256="0fa47zgm7jxvs3jfai54wsc6qa9ycqw4f3yr941fvkczwzh4ch02"; depends=[DBI RSQLite spam SSN]; }; smoof = derive2 { name="smoof"; version="1.5.1"; sha256="01jkldmxn86vmcmmz81mdlhpm1m3bddj4sv550a3b4wm1r3gddng"; depends=[BBmisc checkmate ggplot2 mco ParamHelpers plot3D plotly RColorBrewer Rcpp RcppArmadillo RJSONIO]; }; - smooth = derive2 { name="smooth"; version="2.4.5"; sha256="0yp7ziikd1w0j091c49zqbfwypp49rfxpn410kbh09bay2fb58x1"; depends=[forecast greybox nloptr Rcpp RcppArmadillo zoo]; }; + smooth = derive2 { name="smooth"; version="2.4.6"; sha256="1fcfhf7vzhvfa977a8wwgg4j1pb763a0yr4jzjkk1ah350h49vc4"; depends=[forecast greybox nloptr Rcpp RcppArmadillo zoo]; }; smoothAPC = derive2 { name="smoothAPC"; version="0.3"; sha256="11f34qqdm8m0hmy9jf29q439slchvmqgdfrmak7vcdhfnjcylr5r"; depends=[colorspace lmtest quantreg rgl SparseM]; }; smoothHR = derive2 { name="smoothHR"; version="1.0.2"; sha256="0l33xg3p9pyfrp4rhavz8m1jakk4wr8i14g6jjiizb03rpxdpzqy"; depends=[survival]; }; - smoothSurv = derive2 { name="smoothSurv"; version="2.0"; sha256="0ypgmqf7mj0x0ibid9qx6cbqn4cpig8333g095b64297bf0syvjc"; depends=[survival]; }; + smoothSurv = derive2 { name="smoothSurv"; version="2.0.1"; sha256="0srb6ms1ag3mllkf2rh0pnji9zp8c11mh8i5zgb6zh1nx2s86x93"; depends=[survival]; }; smoother = derive2 { name="smoother"; version="1.1"; sha256="0nqr1bvlr5bnasqg74zmknjjl4x28kla9h5cxpga3kq5z215pdci"; depends=[TTR]; }; smoothie = derive2 { name="smoothie"; version="1.0-1"; sha256="12p4ig8fbmlsby5jjd3d27njv8j7aiwx0m2n1nmgvjj0n330s1kj"; depends=[]; }; smoothmest = derive2 { name="smoothmest"; version="0.1-2"; sha256="14cri1b6ha8w4h8m26b3d7qip211wfv1sywgdxw3a6vqgc65hmk5"; depends=[MASS]; }; @@ -11359,16 +11861,16 @@ in with self; { smss = derive2 { name="smss"; version="1.0-2"; sha256="04lgfdcvnzpnpplyl62fy7slyiy8wkqpjjrzmclgqis3c9zkkncp"; depends=[]; }; sn = derive2 { name="sn"; version="1.5-2"; sha256="16gwr68zzj5v83bqfmzxnzwig3dnjrkxdhs6clri1caqkvrq6aig"; depends=[mnormt numDeriv]; }; sna = derive2 { name="sna"; version="2.4"; sha256="1ks8819qvpdfansfqj9p32s1rhvl26frvbi78m4rx1wd1qcv74i2"; depends=[network statnet_common]; }; - snakecase = derive2 { name="snakecase"; version="0.9.1"; sha256="02462vd08asm4ah2brrc3z2s1lqcya80shrd6w743cylv3h3hpyv"; depends=[stringi stringr]; }; + snakecase = derive2 { name="snakecase"; version="0.9.2"; sha256="1g6xai53dl24ws0mwhqrkcv583ziaq505cv3z8v5dhjgy98kilyj"; depends=[stringi stringr]; }; snappier = derive2 { name="snappier"; version="0.1.0"; sha256="0334zwhqdl3lfw7rg8ql7z10qj8jjrm17yi9mgdcxnzaf3f1p859"; depends=[]; }; snapshot = derive2 { name="snapshot"; version="0.1.2"; sha256="0cif1ybxxjpyp3spnh98qpyw1i5sgi1jlafcbcldbqhsdzfz4q10"; depends=[]; }; snht = derive2 { name="snht"; version="1.0.5"; sha256="0k8w1118b2qrf5zfi902gm6zf7b1mwv7py7wg57vsibh2r2ra8ah"; depends=[ggplot2 gridExtra mgcv plyr reshape2 zoo]; }; snipEM = derive2 { name="snipEM"; version="1.0"; sha256="0f98c3ycl0g0l3sgjgk7xrjp6ss7n8zzlyzvpcb6agc60cnw3w03"; depends=[GSE MASS mvtnorm Rcpp RcppArmadillo]; }; snn = derive2 { name="snn"; version="1.1"; sha256="0yywn3v1iz9xizwli3gmzprkx66b5a813mbp8hq2vsj8n4lfj8r5"; depends=[]; }; snnR = derive2 { name="snnR"; version="1.0"; sha256="0qrl5ivpmipibszx8k9fvd8g462zzdcmzbjj1hb8apv4z79gzima"; depends=[]; }; - snow = derive2 { name="snow"; version="0.4-2"; sha256="1mxbrkpnmq32x4wd0194d541661yvfrrjlr3lsf7qq53ms3h21zf"; depends=[]; }; + snow = derive2 { name="snow"; version="0.4-3"; sha256="1n3n8pva9s34fvlw32yng0x416lmbv7q1fsd0ywa4kikmxym64l5"; depends=[]; }; snowFT = derive2 { name="snowFT"; version="1.6-0"; sha256="00rq2xibzhx7441v9jg138a4fkmx28hifs4yyj3pwi8najf0df4n"; depends=[rlecuyer snow]; }; - snowboot = derive2 { name="snowboot"; version="0.5.2"; sha256="07mly89x9mj5cvpmi45xmlr4d1l1d2fdcagmniviqqqhmllc50pi"; depends=[igraph Rcpp VGAM]; }; + snowboot = derive2 { name="snowboot"; version="1.0.0"; sha256="1fqvij959699bfyzc2b2dmgkm3nm119b2zg0jh29mpka3v5qqy3n"; depends=[igraph Rcpp Rdpack VGAM]; }; snowfall = derive2 { name="snowfall"; version="1.84-6.1"; sha256="13941rlw1jsdjsndp1plzj1cq5aqravizkrqn6l25r9im7rnsi2w"; depends=[snow]; }; snowflakes = derive2 { name="snowflakes"; version="1.0.0"; sha256="0adna9jfs0wv4dhyjczxhq7c0ldjfai07p1q9119avxyilv9x0vi"; depends=[]; }; snp_plotter = derive2 { name="snp.plotter"; version="0.5.1"; sha256="16apsqvkah5l0d5qcwp3lq2jspkb6n62wzr0wskmj84jblx483vv"; depends=[genetics]; }; @@ -11381,7 +11883,7 @@ in with self; { sns = derive2 { name="sns"; version="1.1.2"; sha256="132zd57xb2y0nshw4lakf49r2mvvkv7j32f7l7hqrh91mw7wyqpr"; depends=[coda mvtnorm numDeriv]; }; soc_ca = derive2 { name="soc.ca"; version="0.7.3"; sha256="0z3phmvgwd3s6swfaywq851my12a2n48i6k26vhggc6pf9d28phl"; depends=[ellipse ggplot2 ggrepel gridExtra reshape2 shiny]; }; social = derive2 { name="social"; version="1.0"; sha256="0ny81bhj80rlwwa6cgbkdz2rxz6bp0f3nvjr1sqxr4s8l8rnf4ic"; depends=[Rcpp]; }; - socialmixr = derive2 { name="socialmixr"; version="0.1.2"; sha256="0cj8l1gl7c9hk3hpznfqhblmh79qvi9866713sry538f3kkv897c"; depends=[countrycode curl data_table httr jsonlite oai stringr wpp2015 XML]; }; + socialmixr = derive2 { name="socialmixr"; version="0.1.3"; sha256="16z0ykbji9vh2j0d02x6vcrxwwqpzjckfxr1wjkvfc86mqpgpqmd"; depends=[countrycode curl data_table httr jsonlite oai stringr wpp2015 XML]; }; sodavis = derive2 { name="sodavis"; version="1.2"; sha256="1jf5sml51qxlpgv5b1rvyig4dm4ijw2hpnk85zf790jp22xm64jw"; depends=[MASS mvtnorm nnet]; }; sodium = derive2 { name="sodium"; version="1.1"; sha256="1zxzi8xvxnhgcd5qrylf08nz1cdq3aslrswjas440qg63ypmbf6w"; depends=[]; }; sofa = derive2 { name="sofa"; version="0.3.0"; sha256="10f01a23bq6a30f95cilfan588dg0bg36y7g14q46rmcz15cqbrx"; depends=[crul jsonlite mime R6]; }; @@ -11393,7 +11895,7 @@ in with self; { soilDB = derive2 { name="soilDB"; version="2.0-1"; sha256="0nzi0fss77x0bjdzslhy0flwvhap0i0cq3xw82x7sggnbmc3ya72"; depends=[aqp curl Hmisc plyr raster reshape2 sp xml2]; }; soilcarbon = derive2 { name="soilcarbon"; version="1.2.0"; sha256="1gxq7np5xh3jcqbsf8xva4b82rv6rab2j23mbkc4pjs6nbnzvzba"; depends=[devtools ggplot2 openxlsx shiny]; }; soilphysics = derive2 { name="soilphysics"; version="3.1"; sha256="11c094bqbwhggh0n3hdva1321gqzz2k1b7v3767wyyk1xpgzg98r"; depends=[boot MASS rpanel tkrplot]; }; - soiltexture = derive2 { name="soiltexture"; version="1.4.6"; sha256="1ak8vp6y2cb04118bw5inmwwgjvbxmzpbarr6ga7r1w5i16c7nk7"; depends=[MASS sp]; }; + soiltexture = derive2 { name="soiltexture"; version="1.5.1"; sha256="1l9npvk910488qzd45ibc7ss557hnkb78lx1p6fs3nhl8sacgyxh"; depends=[MASS sp]; }; soilwater = derive2 { name="soilwater"; version="1.0.5"; sha256="11gal7hj73j82qx65krmzpmf0gpm41ph8hw70df46dbf4w23vvjn"; depends=[]; }; sokoban = derive2 { name="sokoban"; version="0.1.0"; sha256="07r2zv9rynvw06fpncrz3rsmkdy6z2pcvmm559bhs428kmnq2xib"; depends=[]; }; solaR = derive2 { name="solaR"; version="0.44"; sha256="1waxi2zfns4dh1vpsl3khbgaw07icp4f1ax9l0pry9qipmk0nk3k"; depends=[lattice latticeExtra RColorBrewer zoo]; }; @@ -11401,14 +11903,14 @@ in with self; { solarius = derive2 { name="solarius"; version="0.3.0.2"; sha256="17c765nxq81xshyyl4lfhqjmgvmhn9xyzc6x4qd33wvhh4148f38"; depends=[data_table ggplot2 plyr]; }; solrad = derive2 { name="solrad"; version="0.99.0"; sha256="1r3bz2nvg660bfba9xbqlzrysvn0wpmn948qx3hfbqcv5ihcnly3"; depends=[]; }; solrium = derive2 { name="solrium"; version="1.0.0"; sha256="1rlf60kynqb8pvzllfdkiabxgnqx60hwm8vy86y9f2bh7d7jsdhf"; depends=[crul dplyr jsonlite plyr R6 tibble xml2]; }; - solvebio = derive2 { name="solvebio"; version="2.5.0"; sha256="1053pmmm1bl5kfrgmlbfnb6xywvv4nwrd6mwn9kyj2p63akvwq1s"; depends=[dplyr httr jsonlite mime]; }; + solvebio = derive2 { name="solvebio"; version="2.6.1"; sha256="17zcnfmccfl2njv1ph40jchxb06x0qhgn82fz4yg8nqyf8b9cq5h"; depends=[dplyr httr jsonlite mime]; }; som = derive2 { name="som"; version="0.3-5.1"; sha256="1fbza1jxvwrkf5x3inkj36vshhkn7mz0ajqlxalbfmk6ngjw1x56"; depends=[]; }; som_nn = derive2 { name="som.nn"; version="1.1.0"; sha256="0mw2c2lqvdq9bhndpjyawjy43l4x7clcsx2350j45g7fnchhy602"; depends=[class hexbin kohonen som]; }; soma = derive2 { name="soma"; version="1.1.1"; sha256="1mc1yr9sq9h2z60v40aqmil0xswj5hgxfdh4racq297qw3a97my4"; depends=[reportr]; }; someKfwer = derive2 { name="someKfwer"; version="1.2"; sha256="0widny5l04ja91fy16x4giwrabwqhx0fs3yl48pv9xh4zj6sx563"; depends=[]; }; someMTP = derive2 { name="someMTP"; version="1.4.1"; sha256="19bsn8rny1vv9343bvk8xzhh82sskl0zg0f5r59g9k812q5llchn"; depends=[]; }; somebm = derive2 { name="somebm"; version="0.1"; sha256="1iwwc94k6znh4d3bbjnvwp4chc4wg0iy4v2f99cs4jasrsimb4p8"; depends=[]; }; - sommer = derive2 { name="sommer"; version="3.5"; sha256="1qsg822y3fsqs7knc8vwlhnnh51d8f8rn7yzvmxiqd8qnrkkmbix"; depends=[data_table lattice MASS Matrix]; }; + sommer = derive2 { name="sommer"; version="3.6"; sha256="1znp5svj2l2632ivnilc0060x8k8mbiv55ppgfcmnj5d22vlb06q"; depends=[data_table lattice MASS Matrix]; }; somplot = derive2 { name="somplot"; version="1.6.4"; sha256="06c8p2lqz3yxmxdl7ji8a3czvxnsbl7bwyiig76pkwc3a5qqfbb9"; depends=[hexbin]; }; sonar = derive2 { name="sonar"; version="1.0.2"; sha256="1f0f5iqi3y9vnxyym14nm8dqxw0vcpnxmvvkx4sm612i4fclg1f9"; depends=[]; }; sonicLength = derive2 { name="sonicLength"; version="1.4.4"; sha256="1v46xzx3jxxxs2biyrq6xbv2lhpz1i95la93hj6dl4jfyikmx0im"; depends=[]; }; @@ -11424,7 +11926,7 @@ in with self; { sotu = derive2 { name="sotu"; version="1.0.2"; sha256="0aqwkawaydsm91hz13msjg1a5llg7xmv6hxmfmsaganrl7iaym3c"; depends=[]; }; sound = derive2 { name="sound"; version="1.4.5"; sha256="1kbbb614d0fmj9l0yjiwf5yqnl7sby4xklp7qwp6rwjvq9bnm0ab"; depends=[]; }; soundecology = derive2 { name="soundecology"; version="1.3.3"; sha256="16h6gbdlyav7wbfisdv1f2zsqhr45liidgj7qqk8giwjxgan8q97"; depends=[ineq oce pracma seewave tuneR vegan]; }; - soundgen = derive2 { name="soundgen"; version="1.2.0"; sha256="1k6my6lcwy36fa25glyd8vfr3b57fwx7nz4s24bkf40vp0vkpsc2"; depends=[dtw mvtnorm phonTools plyr reshape2 seewave shiny tuneR zoo]; }; + soundgen = derive2 { name="soundgen"; version="1.3.1"; sha256="0hsd00bmm6szvx0pjlprqg4749pwr39hippwvl5fkwm8fqb482p5"; depends=[dtw mvtnorm phonTools plyr reshape2 seewave shiny tuneR zoo]; }; source_gist = derive2 { name="source.gist"; version="1.0.0"; sha256="03bv0l4ccz9p41cjw18wlz081vbjxzfgq3imlhq3pgy9jdwcd8fp"; depends=[RCurl rjson]; }; sourceR = derive2 { name="sourceR"; version="1.0.1"; sha256="01qxa44s9szaxl0rdcx4p0wn4vby17hdzdjzpsbls3prsnr0jaad"; depends=[assertthat cluster dplyr gplots gtools hashmap R6 reshape2 SPIn tensorA]; }; sourcetools = derive2 { name="sourcetools"; version="0.1.7"; sha256="1jnjir0q2dj724f1mjm6p5h77yzyx6xcqy9r2g7gmcxkxw349627"; depends=[]; }; @@ -11433,46 +11935,48 @@ in with self; { spAddins = derive2 { name="spAddins"; version="0.2.0"; sha256="19wbcghcf0f9qvqy92jhsdcpmd9b4lkhxndvr71cyhzga539lh1n"; depends=[magrittr purrr rstudioapi stringr]; }; spBayes = derive2 { name="spBayes"; version="0.4-1"; sha256="1cypl3kvcr7nwdkq59zpdhkasz0z5r2gk8hr6wf1a1992k8c33ag"; depends=[abind coda Formula magic]; }; spBayesSurv = derive2 { name="spBayesSurv"; version="1.1.3"; sha256="0syb4x05j878jhcql8prfw1aqxmpi1idxk1d4xl52j32wngkpn8b"; depends=[coda fields MASS Rcpp RcppArmadillo survival]; }; - spData = derive2 { name="spData"; version="0.2.9.0"; sha256="1yzgfbihpx9xj2vw6amm5sqib9d8xs4p964hlqbvypp4hfphnpwc"; depends=[]; }; + spCP = derive2 { name="spCP"; version="1.0"; sha256="1qi5p77kjwkv8c84j20mx0zm4y4vycip4ghgf6jqhn14d4ifvkmj"; depends=[msm mvtnorm Rcpp RcppArmadillo]; }; + spData = derive2 { name="spData"; version="0.2.9.4"; sha256="039rf7c5npv0xhw46ja5igravi3l0zcg9vfkngza1vn4zwgg1yi8"; depends=[]; }; spFSR = derive2 { name="spFSR"; version="1.0.0"; sha256="0094plnjlyhnnjqw3i4an5q95bw6hjy1gzc7zr6wy77faivqsbms"; depends=[class ggplot2 mlbench mlr parallelMap tictoc]; }; - spGARCH = derive2 { name="spGARCH"; version="0.1.5"; sha256="14r8b2hj211r3bqk44l5y4zvlqbk6h8pa5i25rn0d9fqr37cks1f"; depends=[Matrix Rcpp RcppEigen Rsolnp spdep truncnorm]; }; + spGARCH = derive2 { name="spGARCH"; version="0.1.6"; sha256="10ksbqk5s9qq6lz17h07kmg2gr1ppq2rjm06kipscs9v0zldki9l"; depends=[Matrix Rcpp RcppEigen Rsolnp spdep truncnorm]; }; spMC = derive2 { name="spMC"; version="0.3.9"; sha256="10cvha5j2pi3b2qiq3jbrc10yi84a595zlg0wshx3wrzxb1rim85"; depends=[]; }; spMaps = derive2 { name="spMaps"; version="0.3"; sha256="0w4rrzbybaf9zgb09zg0zkf2hgvfrwx57yzbxm4px1ygdfxyi4cm"; depends=[raster rgeos sp]; }; spNNGP = derive2 { name="spNNGP"; version="0.1.1"; sha256="0b55arvy5xr592bs2082djyzaa48jbv0y85h7nnj479f8c31grqp"; depends=[coda Formula RANN]; }; spTDyn = derive2 { name="spTDyn"; version="2.0"; sha256="0wandd5iqyqb474096lky04rrgj31gnyqnlmgw8ypxsypd0gqdy0"; depends=[coda sp spacetime spTimer]; }; spTest = derive2 { name="spTest"; version="0.2.5"; sha256="11x2wq3031mqbj4n6hvb4l3sp4382qankdl1v1qh7ab2xa0h6xw8"; depends=[geoR sp]; }; spThin = derive2 { name="spThin"; version="0.1.0"; sha256="06qbk0qiaw7ly1ywbr4cnkmqfasymr7gbhvq8jjbljm0l69fgjpp"; depends=[fields knitr spam]; }; - spTimer = derive2 { name="spTimer"; version="3.1"; sha256="1b3d8z8bb8jagr4vcxwqfcq2y37hb975v75ggmpc02jvy228xs1z"; depends=[coda extraDistr sp spacetime]; }; + spTimer = derive2 { name="spTimer"; version="3.2"; sha256="1hw40jb8n9amg3i1lyjlc26gpafxd0jjf3yw5r24pqlh0d11n0i7"; depends=[coda extraDistr sp spacetime]; }; spa = derive2 { name="spa"; version="2.0"; sha256="1np50qiiy3481xs8w0xfmyfl3aypikl1i1w8aa5n2qr16ksxrnq3"; depends=[cluster MASS]; }; - spaMM = derive2 { name="spaMM"; version="2.4.35"; sha256="1b013kyrhld2y4wr69v4bkii4qjp38hrp1srmmj5ldb68zw3vadz"; depends=[MASS Matrix nlme nloptr pbapply proxy Rcpp RcppEigen]; }; + spaMM = derive2 { name="spaMM"; version="2.5.0"; sha256="00y2n0k9qq54qa1vz72q7g6m3nq62n6wm3vxx2c540k404kil8p3"; depends=[MASS Matrix nlme nloptr pbapply proxy Rcpp RcppEigen]; }; spaa = derive2 { name="spaa"; version="0.2.2"; sha256="163iipz1knxx1lzby9a3n1f014yqkf25z1wpwwy4gbx7sia499d5"; depends=[]; }; space = derive2 { name="space"; version="0.1-1"; sha256="1qigfz62xz47hqi43aii3yr4h7ddvaf11a5nil7rqprgkd0k6mv3"; depends=[]; }; spaceNet = derive2 { name="spaceNet"; version="1.0.1"; sha256="005jz7bm3c7zi3pgm8wyivc2kl058c0lwdjjzv0qb1vdsq9mpxx1"; depends=[MASS permute RcppTN Rfast sna vegan]; }; spacejam = derive2 { name="spacejam"; version="1.1"; sha256="1mdxmfa1aifh3h279cklm4inin0cx3h0z2lm738bai34j6hpvar7"; depends=[igraph Matrix]; }; - spacesRGB = derive2 { name="spacesRGB"; version="1.0-4"; sha256="0bifagywaksn27cdfsln52f5nwsaj347xilp812shmcma29b08ig"; depends=[]; }; - spacetime = derive2 { name="spacetime"; version="1.2-1"; sha256="1i6yrmyr9vc5lr99w7qhr0jqdx97ckjqay5g0lqdrk98sygpfl4g"; depends=[intervals lattice sp xts zoo]; }; + spacesRGB = derive2 { name="spacesRGB"; version="1.1-1"; sha256="1298dxzli8f4bpv8114y7d9r7d2i80qvbmc9n67znpg5wdib79b7"; depends=[]; }; + spacesXYZ = derive2 { name="spacesXYZ"; version="1.0-1"; sha256="1v6ancnd0k6rpf5b4bh4ndk9d8rlvlqd17snnlq53mr1pm9a2hp8"; depends=[]; }; + spacetime = derive2 { name="spacetime"; version="1.2-2"; sha256="0bgaarh2ibj3z6z504mzcb94x6w2bh5vyn1ar1lllqf4wn93z78y"; depends=[intervals lattice sp xts zoo]; }; spacodiR = derive2 { name="spacodiR"; version="0.13.0115"; sha256="0c0grrvillpwjzv6fixviizq9l33y7486ypxniwg7i5j6k36nkpl"; depends=[colorspace picante Rcpp]; }; spacom = derive2 { name="spacom"; version="1.0-5"; sha256="0b6yh4q9f0ibwlwyckwaya9m645j22x6bdz9mz3chass8qza6bls"; depends=[foreach iterators lme4 Matrix nlme spdep]; }; - spacyr = derive2 { name="spacyr"; version="0.9.9"; sha256="1zdn57k5iacy73xmac32mslqzidpn3d38qyrnbzkzv2slysqwgkw"; depends=[data_table reticulate]; }; - spaero = derive2 { name="spaero"; version="0.2.0"; sha256="0srkah89z23j30y2smlnyhf97mm123apma8vgmgfarbx188bkwpn"; depends=[]; }; - spagmix = derive2 { name="spagmix"; version="0.2-0"; sha256="16yzkq1z5qj21milyw98a5bk7gvi6k3mbwgvnw7s8ckr40pbp48l"; depends=[abind MCMCpack mvtnorm sparr spatstat]; }; + spacyr = derive2 { name="spacyr"; version="0.9.91"; sha256="03dpp26lq4a5x0p5l3l8d2gs9v2pc13c14ir8vf7ws46970f6var"; depends=[data_table reticulate]; }; + spaero = derive2 { name="spaero"; version="0.3.0"; sha256="1l6h6mri78b49mw6b1d9dirygfj57pdyqx6822llnj3wkdn2x87v"; depends=[]; }; + spagmix = derive2 { name="spagmix"; version="0.3-1"; sha256="0xfrm4i28sy490g5324bc43dxlrgcnzxg27gsd5b81mqi03sry9j"; depends=[abind mvtnorm RandomFields sparr spatstat]; }; spam = derive2 { name="spam"; version="2.2-0"; sha256="02v78dmf263drmz3y099gbakbcvaxkb18900s7sw440cjfv691d1"; depends=[dotCall64]; }; spam64 = derive2 { name="spam64"; version="2.2-0"; sha256="1kyj93drzvd4ph6x7wr318xq3ldrrdxb17rwxws39wa4gj7jkmkg"; depends=[]; }; spanel = derive2 { name="spanel"; version="0.1"; sha256="1riyvvfij277mclgik41gyi01qv0k466wyk2wbqqhlvrlj79yzsc"; depends=[]; }; spanish = derive2 { name="spanish"; version="0.3.2"; sha256="1dg4wnvxhybhagag9xx27af6760dlclaivx27mfxywfha312xfpn"; depends=[magrittr xml2]; }; - spant = derive2 { name="spant"; version="0.10.0"; sha256="0kvxaaqij2wnjchp4zrqkwnsp6g767mx840xvyb8lq01a9k7jjyn"; depends=[abind complexplus foreach magrittr matrixcalc minpack_lm nnls plyr pracma readr signal smoother stringr svd tibble tkrplot]; }; + spant = derive2 { name="spant"; version="0.11.0"; sha256="0fy5fsiqf4sgrlzrfy16affdz83f564qm6369jsv6jcdxcsl3pmv"; depends=[abind complexplus foreach magrittr matrixcalc minpack_lm nnls plyr pracma readr signal smoother stringr svd tibble tkrplot]; }; sparc = derive2 { name="sparc"; version="0.9.0"; sha256="0jsirrkmvrfxav9sphk8a4n52fg0d1vnk3i8m804i4xl0s7lrg8s"; depends=[]; }; - sparcl = derive2 { name="sparcl"; version="1.0.3"; sha256="1348pi8akx1k6b7cf4bhpm4jqr5v8l5k086c7s6rbi5p6qlpsrvz"; depends=[]; }; + sparcl = derive2 { name="sparcl"; version="1.0.4"; sha256="138krflvfdlx4hlh90mswds51i8aw2vv00gm5lgkfsvxj4w324jg"; depends=[]; }; spareserver = derive2 { name="spareserver"; version="1.0.1"; sha256="094q5i6v4v37hzfdyps8zni394z312r802hl04jw0xzzps922rq4"; depends=[assertthat httr pingr]; }; - spark = derive2 { name="spark"; version="2.0.0"; sha256="062i9qah9zws6p555pk1b42qmd04l8sx22h71skpx76vgb0lsn83"; depends=[clisymbols]; }; spark_sas7bdat = derive2 { name="spark.sas7bdat"; version="1.2"; sha256="1kvzfjhf1q5jzlq5d04s7d96j63vnvqqrh8s03rwkl79h1dhqhhp"; depends=[sparklyr]; }; sparkTable = derive2 { name="sparkTable"; version="1.3.0"; sha256="1fc2nihxfrjpmxm9g9296mz5czd3ydvi1v37g8qgb20j7b73c64h"; depends=[boot Cairo ggplot2 gridExtra pixmap Rglpk RGraphics shiny StatMatch xtable]; }; sparkavro = derive2 { name="sparkavro"; version="0.1.0"; sha256="0jihqvjs7dgyxhyzhsbki7khy7fjniwf9xwlangzqfi4rcan8g7x"; depends=[DBI dplyr sparklyr]; }; + sparkbq = derive2 { name="sparkbq"; version="0.1.0"; sha256="0jcxnivi5zfbixmdywhn1v42lxi085wh7r4c26laclz9j2wvj8mk"; depends=[sparklyr]; }; sparkline = derive2 { name="sparkline"; version="2.0"; sha256="0lrr1lm7603di7x3mf53cp13d9ssjh9gmb43wa6z9yqapis2djm2"; depends=[htmltools htmlwidgets]; }; - sparklyr = derive2 { name="sparklyr"; version="0.8.4"; sha256="1gmzg8464wqygx8r0rh1d67a2h9zpm98y6jwi3ay4adw7bnffhvx"; depends=[assertthat base64enc broom config DBI dbplyr digest dplyr httr jsonlite lazyeval openssl rappdirs readr rlang rprojroot rstudioapi shiny tidyr withr xml2]; }; + sparklyr = derive2 { name="sparklyr"; version="0.9.2"; sha256="06jkxp7y57fs2ij1rzr56lf3a5900l6a0aq24qapyyn6jsvrk00h"; depends=[assertthat base64enc broom config DBI dbplyr digest dplyr forge httr jsonlite lazyeval openssl purrr r2d3 rappdirs rlang rprojroot rstudioapi shiny tibble tidyr withr xml2]; }; sparktex = derive2 { name="sparktex"; version="0.1"; sha256="0r6jnn9fj166pdhnjbsaqmfmnkq0qr1cjprihlnln9jad05mrkjx"; depends=[]; }; sparkwarc = derive2 { name="sparkwarc"; version="0.1.1"; sha256="07b66f12fz19042kj7d9p32j9sy3103zvil36xkf21hm9iyg6xph"; depends=[DBI sparklyr]; }; - sparr = derive2 { name="sparr"; version="2.2-11"; sha256="01li60cybv9kg54zkc9rh4ra6danzbnap9rx59pgfj7zkhs2phmn"; depends=[doParallel foreach misc3d spatstat spatstat_utils]; }; + sparr = derive2 { name="sparr"; version="2.2-13"; sha256="1cn8bzlfairfrxfwwdap0pnaa97rn9h13jz54il8cn9zacnzb8yc"; depends=[doParallel foreach misc3d spatstat spatstat_utils]; }; sparseBC = derive2 { name="sparseBC"; version="1.1"; sha256="1w60n2875n809lbrn0hd4kdmsyfd64aikgzxchza8b59x77l0psy"; depends=[fields glasso]; }; sparseEigen = derive2 { name="sparseEigen"; version="0.1.0"; sha256="0vqcy61rarmp3liz8fr3vs3y40hkb3wfw89b5xsj1byaiap4772s"; depends=[]; }; sparseFLMM = derive2 { name="sparseFLMM"; version="0.2.2"; sha256="12143qij3p8vry9i02i52nj00m1ckkwg2rq99dq00dq43axcpvgw"; depends=[data_table MASS Matrix mgcv refund]; }; @@ -11485,17 +11989,16 @@ in with self; { sparseSVM = derive2 { name="sparseSVM"; version="1.1-6"; sha256="0b0qiikjyyh9qfd4jl69zqnlp7adxq63mwsxvgwvyc0pv5ccg8i0"; depends=[]; }; sparsebn = derive2 { name="sparsebn"; version="0.0.5"; sha256="19315nzj9pz98498amlhas6ii3vwvn3qxz5a6136nh2xfwfg2bhc"; depends=[ccdrAlgorithm discretecdAlgorithm sparsebnUtils]; }; sparsebnUtils = derive2 { name="sparsebnUtils"; version="0.0.6"; sha256="02a75ldvxfn0awn2aaws3fgd4zzk1jjfry4nxjf3y1grdbbz396y"; depends=[Matrix nnet]; }; - sparsediscrim = derive2 { name="sparsediscrim"; version="0.2.4"; sha256="1sa3yssncbpx8yid5wrnxdq7jl3hy5rskyh60v5x592ijcb2mif0"; depends=[bdsmatrix corpcor dplyr ggplot2 mvtnorm]; }; - sparseinv = derive2 { name="sparseinv"; version="0.1.2"; sha256="1lf0lbk8dslasd6m1rq4wzpxa1v427j5i9j0rrw5xjx80z1gc206"; depends=[Matrix spam]; }; + sparseinv = derive2 { name="sparseinv"; version="0.1.3"; sha256="06inzix9m7b5g7c97lyvyl2g7fdr4iz60791hl2w9mah7nd6bfja"; depends=[Matrix Rcpp spam]; }; sparsepca = derive2 { name="sparsepca"; version="0.1.2"; sha256="0wk2nm37p15gb8i4s45izzzdmwywr56kv4g0j3jd5s3slm224vv4"; depends=[rsvd]; }; - sparsepp = derive2 { name="sparsepp"; version="0.2.0"; sha256="0ibadyv7lchxw3y1dspjnbhc4pin4dxwqj9rdrdxfbvlx0i3jgxr"; depends=[]; }; + sparsepp = derive2 { name="sparsepp"; version="1.22"; sha256="0wa1585pkbn3y11apyim4z1ixn300c1yyv9bf2qldb6cjfiv7699"; depends=[]; }; sparsereg = derive2 { name="sparsereg"; version="1.2"; sha256="1ipsang2fppmjx4h5ljgzx3c44z3lggc376ghrqqgmxb5ql8bcp3"; depends=[coda ggplot2 GIGrvg glmnet gridExtra MASS MCMCpack msm Rcpp RcppArmadillo VGAM]; }; sparsestep = derive2 { name="sparsestep"; version="1.0.0"; sha256="0f3wrwiyn990sn3x9r50zgs8cr76nmyisdc7qismgx1nn5yx5z0g"; depends=[Matrix]; }; sparsesvd = derive2 { name="sparsesvd"; version="0.1-4"; sha256="1yf373552wvdnd65r7hfcqa3v29dqn7jd4cn431mqd2acnqjrsam"; depends=[Matrix]; }; sparsevar = derive2 { name="sparsevar"; version="0.0.10"; sha256="069r0kbypmx7pw3z2v9l17qidw3d73rzf5zs6yn1adyvpsddjxi8"; depends=[doParallel flare ggplot2 glmnet Matrix mvtnorm ncvreg picasso reshape2]; }; sparsio = derive2 { name="sparsio"; version="1.0.0"; sha256="12nbydgzl3qlanlsfdy8bvg6rxa439lv0z0vbyqssqwky3mmg5c3"; depends=[Matrix Rcpp]; }; spartan = derive2 { name="spartan"; version="3.0.1"; sha256="15gn72cgbb3hf6grq2hhh2vxd3in0jp62k11qfap6fy9rm4cnqg6"; depends=[e1071 ggplot2 gplots lhs mco mlegp neuralnet plotrix psych randomForest XML]; }; - spass = derive2 { name="spass"; version="1.1"; sha256="1kr2ixyvsm82h2brdm51bzll69632mkj9f88a2ny0pcyqrbggg83"; depends=[geepack MASS multcomp mvtnorm Rcpp]; }; + spass = derive2 { name="spass"; version="1.2"; sha256="0vf7fl68ibv6bwj6v3mh7d0l809kxlcjjgpwqhpgrkqmk1qvzgss"; depends=[geepack MASS multcomp mvtnorm Rcpp]; }; spate = derive2 { name="spate"; version="1.5"; sha256="1hlh4iwx1lrl8r2gag33z2xdv6k4hg86ch4f0jlqnqkhm9hapshf"; depends=[mvtnorm truncnorm]; }; spatgraphs = derive2 { name="spatgraphs"; version="3.2-1"; sha256="0n7f3r4ahv1w5mwx5mnib3g4263kz73rh1fcfk5wb12y52x8n1iz"; depends=[Matrix Rcpp]; }; spatial = derive2 { name="spatial"; version="7.3-11"; sha256="04aw8j533sn63ybyrf4hyhrqm4058vfcb7yhjy07kq92mk94hi32"; depends=[]; }; @@ -11509,12 +12012,14 @@ in with self; { spatialkernel = derive2 { name="spatialkernel"; version="0.4-23"; sha256="0kvhirh7afk2gfy21pa6117yk6kzbaf2dxfkr1ax3b554rnrv4p0"; depends=[spatstat]; }; spatialnbda = derive2 { name="spatialnbda"; version="1.0"; sha256="14mx5jybymasyia752f3vnr5vmswcavbz8bpqr69vlxphw27qkwk"; depends=[mvtnorm SocialNetworks]; }; spatialprobit = derive2 { name="spatialprobit"; version="0.9-11"; sha256="1cpxxylc0pm7h9m83m2cklrh4jni5x79r5m5gibxi6viahwxn9kc"; depends=[Matrix mvtnorm spdep tmvtnorm]; }; + spatialrisk = derive2 { name="spatialrisk"; version="0.4.1"; sha256="0r65y3ch53gbfb0di0svlb2zr39b5v0gbgjh713jgnw44g2g43r3"; depends=[Rcpp RcppProgress]; }; spatialsegregation = derive2 { name="spatialsegregation"; version="2.44"; sha256="02s75q6ylzm6xzr1q23fhps3svlb0ix86dzgr23wf42369gs7h0g"; depends=[spatstat]; }; spatialwarnings = derive2 { name="spatialwarnings"; version="1.2"; sha256="1kpyx1jl23ml4gpbwz5p4srmdq58634dxznw1g6f618wml13ab3s"; depends=[ggplot2 plyr Rcpp RcppArmadillo reshape2 tidyr VGAM]; }; - spatstat = derive2 { name="spatstat"; version="1.56-0"; sha256="0gigb7vpgpwg4hrwsl9wncknrl2c7i4iv9aab2qskbc5z7xxjs4v"; depends=[abind deldir goftest Matrix mgcv nlme polyclip rpart spatstat_data spatstat_utils tensor]; }; - spatstat_data = derive2 { name="spatstat.data"; version="1.3-1"; sha256="13wb9c1r7g2lrrjv7a2qmkyz27yjmcasl9qrzgk09akqgikkbbf3"; depends=[spatstat_utils]; }; + spatsoc = derive2 { name="spatsoc"; version="0.1.4"; sha256="0h41ql1ll1ypmwfjczk3pls78z75xz8qakl61xrynqmw0y7l9fys"; depends=[adehabitatHR data_table igraph rgeos sp]; }; + spatstat = derive2 { name="spatstat"; version="1.56-1"; sha256="0q3srg3rdnvwz52lqpamhhj97nkxkl55kqk2dw1707iic14dv0w6"; depends=[abind deldir goftest Matrix mgcv nlme polyclip rpart spatstat_data spatstat_utils tensor]; }; + spatstat_data = derive2 { name="spatstat.data"; version="1.4-0"; sha256="137cf9x6qcp7lw3rpjqizsy73z99yihff8gr434wlz7b5fwmn7hj"; depends=[spatstat_utils]; }; spatstat_local = derive2 { name="spatstat.local"; version="3.5-7"; sha256="1sdcx4qxv0z5q97rljn34mssbs4w6qbqxhn71xmkns01xypl1wr2"; depends=[spatstat spatstat_utils tensor]; }; - spatstat_utils = derive2 { name="spatstat.utils"; version="1.8-2"; sha256="1wjvwhhyqh8f4cm3xw7vhrnj5qr9vlwkcxkj1l6s4sbjbcli2y2p"; depends=[]; }; + spatstat_utils = derive2 { name="spatstat.utils"; version="1.10-0"; sha256="1wmakkc9b8vzyjdjwgr15hf676lrx11kxgmg3mbl0r9i72lflnvs"; depends=[]; }; spatsurv = derive2 { name="spatsurv"; version="1.2"; sha256="0acg6n5qs3z9c7y2n3amla61dm3z1p16njkx0h52dlgdbj5v1nhn"; depends=[fields geostatsp iterators lubridate Matrix OpenStreetMap RandomFields raster RColorBrewer rgeos rgl sp spatstat stringr survival]; }; spbabel = derive2 { name="spbabel"; version="0.4.8"; sha256="1f0lradf7a3fjkdhbviw24awpqj1pzw1wfvigrqhnmf0jjw3nng3"; depends=[dplyr sp tibble]; }; spc = derive2 { name="spc"; version="0.6.0"; sha256="118r2yjfmzm0bi3ccx9pzi56vw2kbjz0pbxrjqdks0075fk7ij0q"; depends=[]; }; @@ -11524,7 +12029,7 @@ in with self; { spcov = derive2 { name="spcov"; version="1.01"; sha256="1brmy64wbk56bwz9va7mc86a0ajbfy09qpjafyq2jv7gm7a35ph5"; depends=[]; }; spcr = derive2 { name="spcr"; version="2.0"; sha256="1n0lva9brpzxysw6p7l88cj8d46jng2zd7zvr5brqldzd3yl63l9"; depends=[]; }; spd = derive2 { name="spd"; version="2.0-1"; sha256="00zxh4ri47b61jkcjf5idl9hhlfld6rhczsnhmjsax59884f2i8m"; depends=[KernSmooth]; }; - spdep = derive2 { name="spdep"; version="0.7-7"; sha256="0wrlximy4w5y5aszy3pacmf3ag224chl12q4rj4r7ky6zw2sn1ns"; depends=[boot coda deldir expm gmodels LearnBayes MASS Matrix nlme sp spData]; }; + spdep = derive2 { name="spdep"; version="0.7-9"; sha256="17sx6zkrnmbhhqqjb9qgp9mmykszqqr2hw3npk8q74k567mgxgcm"; depends=[boot coda deldir expm gmodels LearnBayes MASS Matrix nlme sp spData]; }; spdownscale = derive2 { name="spdownscale"; version="0.1.0"; sha256="0pl560km9629iwy13h7359ab7ixzs09hg986kvk0xbnc348srb86"; depends=[]; }; spdplyr = derive2 { name="spdplyr"; version="0.1.3"; sha256="1f34yzj9z4f1dj7pqaayk0mvabzwa6kc3kwi1pmpikl1afgsyv25"; depends=[dplyr lazyeval rlang sp spbabel tibble]; }; spduration = derive2 { name="spduration"; version="0.17.1"; sha256="1hsz4hcw85f1rj2pd8ppzsd1r8fh4yf6axc11yf2hd287ghzzxzy"; depends=[corpcor forecast MASS plyr Rcpp RcppArmadillo separationplot xtable]; }; @@ -11541,12 +12046,12 @@ in with self; { spectral_methods = derive2 { name="spectral.methods"; version="0.7.2.133"; sha256="0k8kpk94d2qzqdk3fnf6h9jmwdyp8h3klr0ilm5siwq5wkcz339l"; depends=[abind DistributionUtils foreach JBTools ncdf_tools nnet raster RColorBrewer RNetCDF Rssa]; }; spectralAnalysis = derive2 { name="spectralAnalysis"; version="3.12.0"; sha256="0mz01hx86qi65k6vzz9k1j9q7gi10dh14cqvrlfy93f3kmi52q0x"; depends=[baseline BiocGenerics data_table ggplot2 hNMF jsonlite magrittr NMF nnls plotly plyr RColorBrewer signal viridis]; }; spectralGP = derive2 { name="spectralGP"; version="1.3.3"; sha256="1jf09nsil4r90vdj7n1k6ma9dzzx3bwv0fa7svil9pxrd2zlbkbs"; depends=[]; }; - spectrolab = derive2 { name="spectrolab"; version="0.0.6"; sha256="0pzisyi64f9wm79qxw22rmgm6lsgn6jqavxh688yrm94nnn1qv5h"; depends=[devtools prospectr RColorBrewer shiny shinyjs]; }; + spectrolab = derive2 { name="spectrolab"; version="0.0.8"; sha256="1hjvi9na94f7n7yr64p0bvh0mzckwmfh36d6zxisrxr08zxwyxzz"; depends=[devtools prospectr RColorBrewer shiny shinyjs usethis]; }; speedglm = derive2 { name="speedglm"; version="0.3-2"; sha256="1b25zimk0z7ad62yacqdg0zk0qs0jja4i918ym942xfw4j1z3jjz"; depends=[MASS Matrix]; }; - spef = derive2 { name="spef"; version="1.0-7"; sha256="006qp0qsqrlbbbv4b86ikqz1ig0php0cahqz4c9n3js1kxwsdi7d"; depends=[BB ggplot2 nleqslv plyr sm SQUAREM survival]; }; + spef = derive2 { name="spef"; version="1.0.8"; sha256="1c4hpm19zqh869z8qbixkfbidnygc3fy91d0m2l4bp2s6bq1wdnz"; depends=[BB ggplot2 nleqslv plyr sm SQUAREM survival]; }; speff2trial = derive2 { name="speff2trial"; version="1.0.4"; sha256="0dj5mh2sdp6j4ijgv14hjr39rasab8g83lx1d9y50av11yhbf2pw"; depends=[leaps survival]; }; spellcheckr = derive2 { name="spellcheckr"; version="0.1.2"; sha256="09snc1ymzr4njnr3w502b84dqwjjd414higjxqi48jvh27br5k1l"; depends=[data_table dplyr stringr]; }; - spelling = derive2 { name="spelling"; version="1.1"; sha256="10zhzbpyjw5lkg4iyjwgs5xp2c8bgwyzjg146fcml6cjs6xhl8ni"; depends=[commonmark hunspell knitr xml2]; }; + spelling = derive2 { name="spelling"; version="1.2"; sha256="1gdxxwz0n2z05d8xqk0kcvv2zffa810hda57i23zsysbrpn751s4"; depends=[commonmark hunspell knitr xml2]; }; spemd = derive2 { name="spemd"; version="0.1-1"; sha256="1aw8dg2fm8qd95bgim2kjwp7ax4b2g78521llsxv7fhdj9hl7rgw"; depends=[MBA sp spdep]; }; sperich = derive2 { name="sperich"; version="1.5-7"; sha256="1apgq5nsl6nw674dy7bc7r7z962wcmqsia5n67a8n6c5lcgcif3f"; depends=[foreach rgdal SDMTools sp]; }; sperrorest = derive2 { name="sperrorest"; version="2.1.5"; sha256="126vwk3bxs27gblakc5nplj0k90a21gks9d0kbyanlxc2ihsy243"; depends=[doFuture foreach future future_apply gdata glue magrittr pbapply pbmcapply purrr ROCR rpart stringr]; }; @@ -11563,35 +12068,37 @@ in with self; { spider = derive2 { name="spider"; version="1.5.0"; sha256="1y034v42jxjl3vj87iz5kaizq7fwppmn56z7yyvrrmk5ps4nqr1j"; depends=[ape pegas]; }; spiderbar = derive2 { name="spiderbar"; version="0.2.1"; sha256="1mm9g58riyjxpfwjj28shlw9zlycsgcxl6xw8im0gm815v2plyhv"; depends=[Rcpp]; }; spiders = derive2 { name="spiders"; version="1.2"; sha256="1qklm178bgkgpvrjf024jphsdh9can8300sf0702l4h0rk2daqbq"; depends=[plyr]; }; - spikeSlabGAM = derive2 { name="spikeSlabGAM"; version="1.1-11"; sha256="1f16jvdj6kbiiypnbbj10nj7l88kkrxasrribqpjv7ai62dlximn"; depends=[akima cluster coda ggplot2 gridExtra MASS MCMCpack mvtnorm R2WinBUGS reshape scales]; }; + spikeSlabGAM = derive2 { name="spikeSlabGAM"; version="1.1-14"; sha256="1ha2ngs5jkrcd3ay26vynrd31fqf9pva5r0p954dyfbpbinizxgf"; depends=[akima cluster coda ggplot2 gridExtra MASS MCMCpack mvtnorm R2WinBUGS reshape scales]; }; spikes = derive2 { name="spikes"; version="1.1"; sha256="080sna0sgii61kai5sirs6cijnvk1012djwfw705di9y2lvk1hqk"; depends=[emdbook]; }; spikeslab = derive2 { name="spikeslab"; version="1.1.5"; sha256="0dzkipbrpwki6fyk4hqlql3yhadwmclgbrx00bxahrmlaz1vjzh2"; depends=[lars randomForest]; }; - spind = derive2 { name="spind"; version="2.1.3"; sha256="173jpyq13vdhcwbxwx188fp7jg8l67yh6kxlai13z8lqnlpl1xqh"; depends=[gee geepack ggplot2 lattice MASS RColorBrewer rje splancs stringr waveslim]; }; + spind = derive2 { name="spind"; version="2.2.0"; sha256="1qswvj8hcjds3mjffzlxq87g79gijsk3mw26lfr81vyf5zmwm4w4"; depends=[gee geepack ggplot2 lattice MASS RColorBrewer rje rlang splancs stringr waveslim]; }; spinyReg = derive2 { name="spinyReg"; version="0.1-0"; sha256="0kbg7rncrrl5xdsaw9vj909x97mfp77mjnvghczplmnwmmanyn72"; depends=[]; }; splancs = derive2 { name="splancs"; version="2.01-40"; sha256="0qs3lwyllrkahnvqbm8bzrf03bm9zk4s7p1n19s638y4xf0l6x3r"; depends=[sp]; }; splashr = derive2 { name="splashr"; version="0.4.1"; sha256="1gydnl6qdkqxvgzy3j6n8y4nan4wz6p7wybcgnm5p37n7q6m2rhk"; depends=[curl docker formatR HARtools httr jsonlite lubridate magick openssl purrr scales stringi xml2]; }; splines2 = derive2 { name="splines2"; version="0.2.8"; sha256="0ygzqq0swhcss5v8bn7qg98fpvp3wibbnbzkbpw4nvfd8bg51m1v"; depends=[]; }; + splinetree = derive2 { name="splinetree"; version="0.1.0"; sha256="14bqdad538nm4vps43gpyq3c9lv5hl28064mq9vyldgvvbdr40w2"; depends=[ggplot2 mclust mosaic nlme rpart treeClust]; }; splitFeas = derive2 { name="splitFeas"; version="0.1.0"; sha256="1cfiis32h5kkp8r1mndmj4xss9gw96vdzk7q68q3jhbwqiaxp9rp"; depends=[corpcor matrixStats]; }; splitfngr = derive2 { name="splitfngr"; version="0.1.1"; sha256="0gz65acnkil9xjspl2kzpzyhj7lslga9g3p0k79xh25ia6qal5ws"; depends=[lbfgs]; }; splithalf = derive2 { name="splithalf"; version="0.3.1"; sha256="01ip3brnlyxlxr1hmnmc2w6jg4vm5gjk8fwavclmv7m7hr2bb4xh"; depends=[dplyr tidyr]; }; - splitstackshape = derive2 { name="splitstackshape"; version="1.4.4"; sha256="0vhgb4pysp7hbph7kq8b38m4gqhal40j4p7gij2wrc2rajspzhkq"; depends=[data_table]; }; - splm = derive2 { name="splm"; version="1.4-10"; sha256="0zz28mfs84nqyvl1l0ba7yrhgcxxzw1v0542jc39h4pr537yz1nc"; depends=[bdsmatrix ibdreg MASS Matrix maxLik nlme plm spam spdep]; }; + splitstackshape = derive2 { name="splitstackshape"; version="1.4.6"; sha256="03w6h64ga4zqilffdway4l38l5cbman4yrspkzhbigds12aqz25r"; depends=[data_table]; }; + splm = derive2 { name="splm"; version="1.4-11"; sha256="15app94mxs6xlmqqhpa0q041skc4n4l2wfi6pmmhwinrgcqgncln"; depends=[bdsmatrix ibdreg MASS Matrix maxLik nlme plm spam spdep]; }; splot = derive2 { name="splot"; version="0.4.0"; sha256="1g6n10pjjfhxa8sycr1iamwfdhjhp6g2zn5dkynfhg9j7v0dxnyf"; depends=[]; }; spls = derive2 { name="spls"; version="2.2-2"; sha256="11xp6wnxizc8g91ci9fd7lbjc8pin84c9ak8lr8yg2jyd2l351j9"; depends=[MASS nnet pls]; }; splus2R = derive2 { name="splus2R"; version="1.2-2"; sha256="0xrbj8vxy0pc6hl7m8abv71d3hjw47cl51s7j7priadyqczkq6sz"; depends=[]; }; splusTimeDate = derive2 { name="splusTimeDate"; version="2.5.0-141"; sha256="1z29djg6az8dl47w0b9fpfwhng74xnbh5bq1asv55i8kdm1a4v1s"; depends=[]; }; splusTimeSeries = derive2 { name="splusTimeSeries"; version="1.5.0-75"; sha256="14bg0yzwk3v0b1qrlfaxv48dpk380ha6wb2w4k02c9vmb51ysmw0"; depends=[splusTimeDate]; }; - spm = derive2 { name="spm"; version="1.1.0"; sha256="0xx1g6ir0sanj2p6xgsdghymx1iy2bzsany2j87q49y5hah7349j"; depends=[biomod2 gbm gstat psy randomForest ranger sp]; }; - spm12r = derive2 { name="spm12r"; version="2.7.4"; sha256="0v0zmsbzk6446n1yipz3w99n0n4yya6idff3gfyj7fgq10pcalgz"; depends=[git2r matlabr neurobase oro_nifti R_utils]; }; - spmoran = derive2 { name="spmoran"; version="0.1.4"; sha256="0b58c2v57qj14icd577mpsgxwa84lyib4v9qxcbl26im4dhikmfm"; depends=[doParallel fields foreach ggplot2 Matrix vegan]; }; + spm = derive2 { name="spm"; version="1.1.1"; sha256="0yz1fmh25yv5rdh5ny9xm3k177650ll03bp6pd1d2p8dgqyimv15"; depends=[biomod2 gbm gstat psy randomForest ranger sp]; }; + spm12r = derive2 { name="spm12r"; version="2.8.0"; sha256="1f18f4z017j98kihixjsi9lngxp4fz2bnslfb0xqjzy7wq8d3y6x"; depends=[git2r matlabr neurobase oro_nifti R_utils]; }; + spmoran = derive2 { name="spmoran"; version="0.1.6"; sha256="15cz3ivs20yspdz36279gjcc4w4lr5anb5dyyl96lvz6gjdacb4g"; depends=[doParallel fields foreach ggplot2 Matrix rARPACK spdep vegan]; }; spnet = derive2 { name="spnet"; version="0.9.1-0"; sha256="1fy0fpgz2k985brfqyza1l49y0w2j9z308n542pgmkzqsnsdscpw"; depends=[shape sp]; }; spnn = derive2 { name="spnn"; version="1.1"; sha256="0i77lpxrfa1jxi9znlmn5knmcjpf17q4hf8999b1x8lhqlhiizc1"; depends=[MASS]; }; spocc = derive2 { name="spocc"; version="0.8.0"; sha256="00wm3fkwzcma847kfxliap66sr0i6vfr0kpkvcdjidgk3z51y3bw"; depends=[crul data_table jsonlite lubridate rbison rebird rgbif ridigbio rvertnet tibble whisker wicket]; }; spongecake = derive2 { name="spongecake"; version="0.1.2"; sha256="13fxizbfjvqkhkmxk5bwv2fj2xyjkbxrxicpdgwpg0wsk4dhj3s8"; depends=[ggplot2 jpeg magrittr plyr]; }; sporm = derive2 { name="sporm"; version="1.1"; sha256="07sxz62h4jb7xlqg08sj4wpx121n9jfk65196mnxdvb36lqmb4hp"; depends=[]; }; - spotGUI = derive2 { name="spotGUI"; version="0.2.0"; sha256="05x8i1295qjdzyr1ri5c85lgcmj3sahamdwgzknf87dsc9r4hjcz"; depends=[gridExtra httpuv plotly rclipboard rhandsontable shiny shinyBS shinydashboard shinyjs smoof SPOT XML]; }; + sport = derive2 { name="sport"; version="0.1.1"; sha256="0sqlnapmfdmpsxs5gapcw8k4dbc5jfc48qa6lirvfqz85yg2xzxs"; depends=[data_table ggplot2 Rcpp]; }; + spotGUI = derive2 { name="spotGUI"; version="0.2.1"; sha256="1z664ricdsn8c29ks6hslm89f0qq6ls94pz4k256427cs95pk3ay"; depends=[gridExtra httpuv plotly rclipboard rhandsontable shiny shinyBS shinydashboard shinyjs smoof SPOT XML]; }; spotifyr = derive2 { name="spotifyr"; version="1.0.0"; sha256="1f7sv6qc8bim8vkcsma96zdzd1ci73dpag2dp27mqjcbh716xfy0"; depends=[dplyr httr lubridate purrr tidyr]; }; - spp = derive2 { name="spp"; version="1.15.4"; sha256="0gjg0g30y9w445mimrd29s44ryla1bmh1mdwj4hb85s1yi1l4h25"; depends=[BH caTools Rcpp Rsamtools]; }; + spp = derive2 { name="spp"; version="1.15.5"; sha256="097rb34kk20varsdf0d9gf3k2hxbislsirzgjm61ksrzmj96fj0w"; depends=[BH caTools Rcpp Rsamtools]; }; sppmix = derive2 { name="sppmix"; version="1.0.2"; sha256="1924lrxjlijlbvjbkkwb3pfa4klg49ph6hz66b7kyy1371wa2b9y"; depends=[fields ggplot2 mvtnorm Rcpp RcppArmadillo rgl spatstat]; }; spray = derive2 { name="spray"; version="1.0-3"; sha256="0zy2dwzk33cwch0pdhhsyiy169z39iij3zvvjg81gxa29pq0h1ab"; depends=[magic partitions Rcpp]; }; sprex = derive2 { name="sprex"; version="1.4.1"; sha256="14idml4mipd4wyza7hqf49ww4dparmwaps35hxm8jg5h0w1pgh7j"; depends=[swfscMisc]; }; @@ -11603,7 +12110,7 @@ in with self; { spsi = derive2 { name="spsi"; version="0.1"; sha256="0q995hdp7knic6nca0kf5yzkvv8rsskisbzpkh9pijxjmp1wnjrx"; depends=[plot3D]; }; spsurvey = derive2 { name="spsurvey"; version="3.4"; sha256="0bi2d5jfqbnhhfhs79wid7ksg77vh8r5r8q2g4zbzpjgc9c67lj4"; depends=[deldir foreign Hmisc MASS rgeos sp]; }; spt = derive2 { name="spt"; version="2.5.1"; sha256="04j38d2b35p4798znnc49vqrg8r8bygwi07vybfj3nzimlp2mkrn"; depends=[]; }; - sptemExp = derive2 { name="sptemExp"; version="0.1.1"; sha256="0a4y355j24sll8jmm17lh4j13k21b3nlalsxzpzx2gp5xw1x7jr6"; depends=[automap BayesX BayesXsrc bcv deldir doParallel foreach limSolve ncdf4 plyr R2BayesX raster Rcpp RcppEigen rgdal rgeos sp SpatioTemporal]; }; + sptemExp = derive2 { name="sptemExp"; version="0.1.3"; sha256="1j5c63mywv92c2zyqaa1rp22s5dmsj0as1f3q93455wjvvr42sz6"; depends=[automap BayesX BayesXsrc bcv deldir doParallel foreach limSolve ncdf4 plyr R2BayesX raster Rcpp RcppEigen rgdal rgeos sp SpatioTemporal]; }; sptm = derive2 { name="sptm"; version="17.12-7"; sha256="1l5in0jkqg44rr2id3h25jrfbn7x855p31z338hnmdpfwkpm2b1a"; depends=[kyotil survey survival]; }; spuRs = derive2 { name="spuRs"; version="2.0.2"; sha256="00c0hnyrcbkbj269czxbfgmgi88y0vxzm79sxclllkzr9rdd1p53"; depends=[lattice MASS]; }; spup = derive2 { name="spup"; version="1.3-1"; sha256="0xq9z9iy3bwqhzq783qydgmczxvh7knkk9vdvwnbpbk0rbjgq3kn"; depends=[gstat magrittr mvtnorm purrr raster whisker]; }; @@ -11614,7 +12121,7 @@ in with self; { squash = derive2 { name="squash"; version="1.0.8"; sha256="1x1rw0ny2kas0x8y5vv9czyqmwml7s5d2c8a33vqap0x8q52r4z6"; depends=[]; }; squid = derive2 { name="squid"; version="0.1.1"; sha256="0qv9lazgiqazhq096ybmllalm2l2h794ry4p1r93c10msxg37sdp"; depends=[arm data_table ggplot2 lme4 MASS shiny]; }; sra = derive2 { name="sra"; version="0.1.1"; sha256="03nqjcydl58ld0wq1f9f5p666qnvdfxb5vhd584sdilw1b730ykd"; depends=[]; }; - srp = derive2 { name="srp"; version="1.0.0"; sha256="10mpyy8q419dw0zd96l0z8lkxpcyn1l5fvnyvr3n0lyl6jmf91sy"; depends=[fda mgcv]; }; + srp = derive2 { name="srp"; version="1.1.0"; sha256="1655p3f7y50qjprm03gp5vffgnkin0c7ahzcrj6s8qfrd6gh2vsp"; depends=[fda mgcv]; }; srvyr = derive2 { name="srvyr"; version="0.3.3"; sha256="0xarb92xhsb3c6g45lqq9kgp5yy0y9psi7yrn7yvv1a130lwzs40"; depends=[dplyr magrittr rlang survey tibble]; }; ss3sim = derive2 { name="ss3sim"; version="0.9.5"; sha256="0rdb49bfxvyh0jrqycrv1hxvh7y4kvw81jccjg5ma734x44q0vm5"; depends=[bbmle dplyr foreach ggplot2 gtools lubridate magrittr plyr r4ss]; }; ssa = derive2 { name="ssa"; version="1.2.1"; sha256="10x58c57pa9x6svm4h4xrss72ikin9lpf3ihjwmnkgnaicvsd0bx"; depends=[iterators]; }; @@ -11622,19 +12129,19 @@ in with self; { ssc = derive2 { name="ssc"; version="2.0.0"; sha256="0w7c0blqny7dyjh1a6l9lr7nysgpmasfqbf7wf368rwmv59pk0b3"; depends=[proxy]; }; sscor = derive2 { name="sscor"; version="0.2"; sha256="1kcrr90cxg6k4qkc3pidhkwf4dsnlgbxczxigr2afwpd9cpf104c"; depends=[mvtnorm pcaPP robustbase]; }; ssd = derive2 { name="ssd"; version="0.3"; sha256="1z61n9m6vn0ijawyz924ak0zfl9z13jsb4k4575b7c424ci2p6gy"; depends=[]; }; + ssdtools = derive2 { name="ssdtools"; version="0.0.2"; sha256="193b7qq57vzhv45bvnqz0vh8z89zm83gq8c6ayadw8sbxcras4rs"; depends=[actuar checkr dplyr FAdist fitdistrplus ggplot2 magrittr plyr pryr purrr scales tibble VGAM]; }; ssfa = derive2 { name="ssfa"; version="1.1"; sha256="0fkyalhsjmx2sf8xxkppf4vd272n99nbkxh1scidrsgp4jk6z7fx"; depends=[Matrix maxLik sp spdep]; }; ssfit = derive2 { name="ssfit"; version="1.1"; sha256="1fais0msi2ppgfp0vbx3qri7s9zs51i7n90w36xkwwac4f46bq5y"; depends=[survey]; }; - ssgraph = derive2 { name="ssgraph"; version="1.4"; sha256="1k1ignb6gsjwwsqlkxjlr3pm6avzf9z3aj069f6y0hglz3g74qv0"; depends=[BDgraph igraph Matrix]; }; - ssh = derive2 { name="ssh"; version="0.2"; sha256="12v5yfkaqlbixifw6sfdbjw88fc604sryg4ygml7k383nr8rpklf"; depends=[getPass]; }; + ssgraph = derive2 { name="ssgraph"; version="1.5"; sha256="0d8zfk6q3q2krjyhkpb7h08cmgx7hsw4q7qhpzsbb3pjma0pkad7"; depends=[BDgraph igraph Matrix]; }; + ssh = derive2 { name="ssh"; version="0.3"; sha256="0javjjl8bay18hg69fwwkmkzfin42yqlcafw0g6w9wslbm5a7fxh"; depends=[getPass]; }; ssh_utils = derive2 { name="ssh.utils"; version="1.0"; sha256="08313zzzgcyvzkrkq0w0yf748ya1a9shx5xnan5891v0lah9v0b1"; depends=[stringr]; }; ssize_fdr = derive2 { name="ssize.fdr"; version="1.2"; sha256="0y723lwsnmk3rxbhlsrny9hiy07a5p255ygy9qkj6mri64gk1hby"; depends=[]; }; ssizeRNA = derive2 { name="ssizeRNA"; version="1.2.9"; sha256="1916r0hmhpfa0p1s8myqk8g4i8fgjqkm4wvpb4nf3sl69kfdva95"; depends=[Biobase edgeR limma MASS qvalue ssize_fdr]; }; - sskm = derive2 { name="sskm"; version="1.0.0"; sha256="1qji34v66qj4k9axy5i2lf3j5zps8sjhwk3h3mqfln3pi9z6gmv8"; depends=[fpc sparcl]; }; ssmn = derive2 { name="ssmn"; version="1.1"; sha256="1rab9yjb05g5rphqlhwvdwmsyqlv1f4m0rqxfv8c5pbh170nbwbc"; depends=[mnormt moments sn truncdist]; }; ssmrob = derive2 { name="ssmrob"; version="0.4"; sha256="1inndspir7571f54kalbj0h599v9k6dxdmp0n1l5r3a62vn45hd3"; depends=[MASS mvtnorm robustbase sampleSelection]; }; ssmsn = derive2 { name="ssmsn"; version="0.2.0"; sha256="0fzqdkqhj5hh8pzcwh7i0rglgdq22a5mriyis8r1vhlkdc7n5m39"; depends=[MCMCpack]; }; sspline = derive2 { name="sspline"; version="0.1-6"; sha256="0d6ms8szyn39c7v0397d5ar2hrl8v1l2b7m8hlj37hgp70b9s55h"; depends=[]; }; - sspse = derive2 { name="sspse"; version="0.5-5"; sha256="07656miqrv9g5nn3ahyfj7wb010cwkr3qjhysbsih0p43dwczq0y"; depends=[coda]; }; + sspse = derive2 { name="sspse"; version="0.6"; sha256="1296893wgg0s6z5bv9a3k39gbxazvljl4dxiv4ma1s73nhz0xan9"; depends=[coda RDS scam]; }; ssrm_logmer = derive2 { name="ssrm.logmer"; version="0.1"; sha256="1i9rrsixl3swd04w1gf9gf1r2wb9nkvwhc8ld4bx4zxzm1031f67"; depends=[sfsmisc statmod]; }; sss = derive2 { name="sss"; version="0.1-0"; sha256="1qg56g60h8c52l8lpxihxsdgnqkxiag1mzh3p388r9hhff7g3g0k"; depends=[assertthat xml2]; }; sssc = derive2 { name="sssc"; version="1.0.0"; sha256="00m5zfd3jnbxa8x76v4pfyl4qdfq90n8rqx4hngany0ka1z5g7m6"; depends=[changepoint e1071 ggplot2 VGAM]; }; @@ -11643,17 +12150,18 @@ in with self; { ssym = derive2 { name="ssym"; version="1.5.7"; sha256="0l5d921vlhd4qwddllrgcxpq3bhivvy5ikh3ixdy3s140rzpgwrv"; depends=[Formula GIGrvg normalp numDeriv sandwich survival]; }; st = derive2 { name="st"; version="1.2.5"; sha256="0dnyfjcz37gjjv87nrabb11gw2dlkqhq3mrxdpkzahx0w0g0q0pb"; depends=[corpcor fdrtool sda]; }; stR = derive2 { name="stR"; version="0.4"; sha256="120k8k1l8cfy8x746808jym7lnaplgh4s3lycgyq2wia2c35r0rc"; depends=[foreach forecast Matrix quantreg rgl SparseM]; }; - stUPscales = derive2 { name="stUPscales"; version="1.0.3.1"; sha256="0qs8lj50jrkyh4dmiinpg6dxfs68x6zlp0knr2ckpgik3v51r52z"; depends=[data_table doParallel EmiStatR foreach ggplot2 hydroGOF lattice lmom mAr moments msm xts zoo]; }; + stUPscales = derive2 { name="stUPscales"; version="1.0.3.3"; sha256="1hby7z9j23pd0z2hvyvprjl4gglb2rg9rh5fpkqy26x24nwkgk3h"; depends=[data_table doParallel EmiStatR foreach ggplot2 hydroGOF lattice lmom mAr moments msm xts zoo]; }; staRdom = derive2 { name="staRdom"; version="1.0.8"; sha256="15khv32jbhjq73kr60al39ppf4pps7n48220jhp7sc04fcbi8fwd"; depends=[data_table doParallel dplyr drc eemR foreach GGally ggplot2 matrixStats multiway plotly pracma readr stringr tibble tidyr zoo]; }; staTools = derive2 { name="staTools"; version="0.1.0"; sha256="1ksr0sjkhlwh0fkwcxjcxzbyxs1g78m4spkhrmgdpfzmk5zskqf9"; depends=[magicaxis Rcpp VGAM]; }; - stability = derive2 { name="stability"; version="0.2.0"; sha256="154dp26aghznibnp9h7j86hi30caylvyxp87jkf2p7cb4l3qn5r4"; depends=[dplyr ggfortify ggplot2 lme4 magrittr matrixStats reshape2 rlang scales tibble tidyr]; }; + stability = derive2 { name="stability"; version="0.5.0"; sha256="0mz7ikfhpfbdcp72klq7fi4zfmx2w18gz46yhwywcc4dyi277m11"; depends=[dplyr ggfortify ggplot2 lme4 magrittr matrixStats reshape2 rlang scales tibble tidyr]; }; stable = derive2 { name="stable"; version="1.1.3"; sha256="1fbyba91qi536mbb7hs6bvi1zgwdjvnv6ih7ykyyhkxk85cmfmq3"; depends=[rmutil stabledist]; }; stabledist = derive2 { name="stabledist"; version="0.7-1"; sha256="0scar396wiq6wkbkvwp4qrxqc1m075y56p37i6iry5rw796p1i86"; depends=[]; }; + stablelearner = derive2 { name="stablelearner"; version="0.1-1"; sha256="19mvk6dzg8zg0nj1q4sraqg6h3zj8xvnfc0jql1xiqas9wcypx7d"; depends=[e1071 MASS partykit]; }; stablespec = derive2 { name="stablespec"; version="0.3.0"; sha256="0m143cq0baj2lyakhr31mqk2lg78jzpdlpv2bhwz6bzzip7mqi22"; depends=[foreach ggm graph matrixcalc nsga2R polycor Rgraphviz sem]; }; stabs = derive2 { name="stabs"; version="0.6-3"; sha256="17sa0sjxf6h7gx1ga1pxhv17yrz3qisaivbf5cbc3asvshhswqg9"; depends=[]; }; stackoverflow = derive2 { name="stackoverflow"; version="0.1.2"; sha256="1psw96iscgsx11drmcnh0yjg2jjcaa4akmywh337i6gbgam8kj61"; depends=[]; }; - stacomiR = derive2 { name="stacomiR"; version="0.5.3.1"; sha256="1d05k8s8239d615vqjs6r6rx7r3vqc5gmms8iqds6lhr59bxv83g"; depends=[dplyr ggplot2 gWidgets gWidgetsRGtk2 Hmisc intervals lattice lubridate magrittr mgcv RColorBrewer reshape2 RGtk2 RODBC RPostgreSQL sqldf stacomirtools stringr xtable]; }; - stacomirtools = derive2 { name="stacomirtools"; version="0.5.2"; sha256="1a33yy594699b05lb32zwx6yhmvxzwly6vvf8xzqg6lac64p26r5"; depends=[RODBC xtable]; }; + stacomiR = derive2 { name="stacomiR"; version="0.5.4.0"; sha256="0spkv1xx6mh2v41pba0gasymsb80xvqi42a3v0qqvd0ib8sgj2k7"; depends=[dplyr ggplot2 gWidgets gWidgetsRGtk2 Hmisc intervals lattice lubridate magrittr mgcv RColorBrewer reshape2 RGtk2 RODBC RPostgreSQL sqldf stacomirtools stringr xtable]; }; + stacomirtools = derive2 { name="stacomirtools"; version="0.5.3"; sha256="00zpsfrw0gcjbjr3xdxf2wacrr1zfw6wq7a2ycq32pbh2smbkz4k"; depends=[RODBC xtable]; }; stagePop = derive2 { name="stagePop"; version="1.1-1"; sha256="0949r5ibl3sb10sr5xsswxap3wd824riglrylk7fx43ynsv5hzpy"; depends=[deSolve PBSddesolve]; }; stam = derive2 { name="stam"; version="0.0-1"; sha256="1x1j45fir64kffny0nssb2hwn4rcp8gd2cjv6fw4yy0l4d0xi5iv"; depends=[np sp]; }; stampr = derive2 { name="stampr"; version="0.2"; sha256="10mc71kgnw5712q2gvzd4bmjaw1879r7s599hfsjap21idqb2k2m"; depends=[deldir maptools raster rgdal rgeos sp spdep]; }; @@ -11663,21 +12171,22 @@ in with self; { stargazer = derive2 { name="stargazer"; version="5.2.2"; sha256="1pij76r60hkjlvxw6zw1v7gkib81smiqmjq7mwszn6xclq9lmsvh"; depends=[]; }; starma = derive2 { name="starma"; version="1.3"; sha256="07r0kyabhgbm2v39fcrw0qhxcxj9a9cb45g9chzcnn9qmvramcwx"; depends=[ggplot2 Rcpp RcppArmadillo scales]; }; starmie = derive2 { name="starmie"; version="0.1.2"; sha256="06cvl8gk78c55kcf4rd27d4gfzh2lcg7ldynvx4hclvbw7ak9zdq"; depends=[combinat data_table ggdendro ggplot2 ggrepel gridExtra iterpc label_switching MCL MCMCpack proxy purrr readr stringr tidyr]; }; + stars = derive2 { name="stars"; version="0.2-0"; sha256="0fsl88bg0mxqvijyj7q7a05p1r48lwamhz9vwdj7icv8alz0higr"; depends=[abind classInt ncdf4 ncmeta rlang sf units]; }; startR = derive2 { name="startR"; version="0.0.1"; sha256="12y57n3yip5rz4rln41896a15zv5b4c67k164282fh1p6ww9gr3r"; depends=[abind bigmemory future]; }; - startup = derive2 { name="startup"; version="0.10.0"; sha256="1j9vb1008sg6wwbz8ilxqnqzy7b18cscxiyaijszzx4ygxmcq39j"; depends=[]; }; - startupmsg = derive2 { name="startupmsg"; version="0.9.4"; sha256="1r9dqrfznsrj7s11m56hkzgfnw3qcgzh07pqipl007zr2av9xwqw"; depends=[]; }; + startup = derive2 { name="startup"; version="0.11.0"; sha256="1ibplrnzqv0z7mm8c3py5prlp4wg95xhk1jxv5i3z1w9ndqimbfv"; depends=[]; }; + startupmsg = derive2 { name="startupmsg"; version="0.9.5"; sha256="1dn7yr957qa47c0hxdq2c27qvdpg9iy5i0lwz4kijz9yph2daahh"; depends=[]; }; statGraph = derive2 { name="statGraph"; version="0.1.0"; sha256="13wfylb92lzw08fn3p000v87abs7ij2rb82np1rkgsl8w2kica73"; depends=[igraph MASS]; }; statar = derive2 { name="statar"; version="0.6.5"; sha256="0vmdrdq6db16vfl0rb39x8yfnbdzpcrvywfgp4lss6jby3nvjwd9"; depends=[data_table dplyr ggplot2 lazyeval matrixStats rlang stringr tidyr]; }; statcheck = derive2 { name="statcheck"; version="1.3.0"; sha256="0ivybdcrymlsfv6pg6p5bv70qdvgxf2vgp0kf4r0pf2fcvav1mcp"; depends=[ggplot2 plyr rmarkdown]; }; statebins = derive2 { name="statebins"; version="1.2.2"; sha256="0qfs796dk5x983qah32w3npv9mxzljp3g7kffdd0ansn3z7i1zbb"; depends=[ggplot2 gridExtra RColorBrewer scales]; }; states = derive2 { name="states"; version="0.2.1"; sha256="1f0cwv1jkl4nw0p31p147g71nira5f4hwq8lhjnmns28xq04by24"; depends=[dplyr lubridate]; }; statesRcontiguous = derive2 { name="statesRcontiguous"; version="0.1.0"; sha256="0yzi6ycfj4cc4q0zzzckdz65wp9m4yx6fi7kp9nssj9pj6a8xlrp"; depends=[dplyr magrittr sf]; }; - stationaRy = derive2 { name="stationaRy"; version="0.4.1"; sha256="1iyzg40vi1l4s68kh50in1p97pcb28z6n932cgrx5k1rv3api13g"; depends=[downloader dplyr leaflet lubridate plyr progress readr stringr]; }; - statip = derive2 { name="statip"; version="0.1.5"; sha256="1gyn86kg96yrs9drc23xabf4s8ii32hgjla310sy6pd7c97bwqgf"; depends=[bazar dplyr]; }; + stationery = derive2 { name="stationery"; version="0.98.5.5"; sha256="0c7v9nhbcmdi4c2i185j3fbckqcjr6f0x1pw5dchsp4cw59nr1mc"; depends=[knitr kutils rmarkdown]; }; + statip = derive2 { name="statip"; version="0.2.0"; sha256="012caxqa04qv3z49cz09qzh9crfbdc4il2d2b96l5d3qnqv9xbh9"; depends=[bazar clue rpart]; }; statmod = derive2 { name="statmod"; version="1.4.30"; sha256="07v4x8af60alcw6vbiwf5fp25bhra61kvxz9kqx64lszm0i1fb4x"; depends=[]; }; - statnet = derive2 { name="statnet"; version="2016.9"; sha256="1j5z7awvac3sb66ma1lrc9j23m6hmzqfnqxc0znsm36h324y3y6s"; depends=[ergm ergm_count network networkDynamic sna statnet_common tergm]; }; + statnet = derive2 { name="statnet"; version="2018.10"; sha256="1v0l8bjnqzz9b0b32b31kqmasw0aw4hnlwidlr3xfhbd9clyhyiq"; depends=[ergm ergm_count network networkDynamic sna statnet_common tergm tsna]; }; statnet_common = derive2 { name="statnet.common"; version="4.1.4"; sha256="14dydm4c4dzc4v6ldxpn04q551nczzfablwibrd8lzgja8x9ksic"; depends=[coda]; }; - statnetWeb = derive2 { name="statnetWeb"; version="0.4.0"; sha256="0gqvvpz9435wakpgf5jsznwgd3fix1vyabh87bnnfsm3pfs7rf2x"; depends=[ergm lattice latticeExtra network RColorBrewer shiny sna]; }; + statnetWeb = derive2 { name="statnetWeb"; version="0.5.0"; sha256="02344i8rhjxy8ainfvf5vn39g1nk2n448l76cg74cyxv6zv4f55w"; depends=[ergm lattice latticeExtra network RColorBrewer shiny sna]; }; statprograms = derive2 { name="statprograms"; version="0.2.0"; sha256="0m7px7fmpz2zzlfdi7rbllcjvcjp8iy94f6fa1w4xinh7vz3y6vq"; depends=[]; }; statquotes = derive2 { name="statquotes"; version="0.2.2"; sha256="1xzc3ndddjrlyld0p4zcwwxkj7i3m3adj7c78x9l4lhlw9mxbbqg"; depends=[stringr tidytext wordcloud]; }; statsDK = derive2 { name="statsDK"; version="0.1.1"; sha256="0insx4sivac0nfxaa11iz9dd7374g51fcndsgljj3f14zw1xyq66"; depends=[dplyr ggplot2 httr jsonlite lubridate readr stringr tibble tidyr]; }; @@ -11687,43 +12196,45 @@ in with self; { stddiff = derive2 { name="stddiff"; version="2.0"; sha256="0mik01a8agcdpjq4r7lcdf3w2jcy6s9gx9zl7plzvnl2r3s5xw5b"; depends=[]; }; stdvectors = derive2 { name="stdvectors"; version="0.0.5"; sha256="0gxylknr146qyg9aj22md076cdhrsz75dg25a1hx8525cm71nwd6"; depends=[Rcpp]; }; steadyICA = derive2 { name="steadyICA"; version="1.0"; sha256="0mcalbsgajdpk45k9vpyavn079063hw4ihkw72n9wcy5nb0da14g"; depends=[clue combinat MASS Rcpp]; }; - steemr = derive2 { name="steemr"; version="0.0.4"; sha256="10x90l00mq1aq7xf69vl7lpax0gl9grq182ixp3iwn3pa1wifmpm"; depends=[lattice openair RCurl rlist tm VennDiagram wordcloud XML zoo]; }; + steemr = derive2 { name="steemr"; version="0.0.5"; sha256="012kiglvdpkwd701m5brhb87bljrkvw3j3v95ga5irjlddrgww34"; depends=[RCurl XML]; }; steepness = derive2 { name="steepness"; version="0.2-2"; sha256="0bw7wm7n2xspkmj90qsjfssnig683s3qwg1ndkq2aw3f6clh4ilm"; depends=[]; }; stellaR = derive2 { name="stellaR"; version="0.3-3"; sha256="098sz6b8pl3fyca3g6myp97nna368xhxf8krmibadnnsr49q5zs9"; depends=[]; }; - stellaRbase = derive2 { name="stellaRbase"; version="0.1.0"; sha256="1jwhh14wk57z8acg8vjd7m3nwq0vq4w0x9ml8zhk3gnl4czq8m04"; depends=[data_table httr RJSONIO]; }; stemmatology = derive2 { name="stemmatology"; version="0.3.1"; sha256="1ln5cvn4yldr8xdgadlfzkgxbv6im39mdsdz597zailqnfsr576g"; depends=[cluster igraph xml2]; }; + stepPenal = derive2 { name="stepPenal"; version="0.2"; sha256="08gizl6c606ibbv7x2rdvfw37rghkrprwszha79yngkzpajw8gql"; depends=[caret dfoptim glmnet mvtnorm pROC]; }; stepPlr = derive2 { name="stepPlr"; version="0.93"; sha256="1i54nyz8z5vq3mzfh6h2vd1q0hsdazc4mhrj9ad0zdvn0qnz61lv"; depends=[]; }; stepR = derive2 { name="stepR"; version="2.0-2"; sha256="0inxlgihyivfr0l4gk8zq0043l9s5w4r3x3hwjlzfwbqjkwy1rjs"; depends=[digest R_cache Rcpp]; }; - stepp = derive2 { name="stepp"; version="3.0-11"; sha256="0jrwfvcgh3sjm3zag93kjyny2qqsyiw988vnx6jw7s31bv9g0d6s"; depends=[car survival]; }; + stepp = derive2 { name="stepp"; version="3.2.0.0"; sha256="0fnjqbncadscv6ryvqyqf8qqgpfzh2hka5ld2zvw39mjqzy5gadi"; depends=[car survival]; }; stepwise = derive2 { name="stepwise"; version="0.3"; sha256="1lbx1bxwkf9dw6q46w40pp7h5nkxgghmx8rkpaymm6iybc7gyir2"; depends=[]; }; stheoreme = derive2 { name="stheoreme"; version="1.2"; sha256="14w3jcbs8y8cz44xlq8yybr2jwgk3w7s2msgjhlp1vazy8959s65"; depends=[]; }; sticky = derive2 { name="sticky"; version="0.5.2"; sha256="0yib9llvlxyzcwam3qd3wxz91mdacvh4v888ifxwjhhjihffqvbj"; depends=[]; }; - stilt = derive2 { name="stilt"; version="1.2.0"; sha256="1b9z64g1v5764h3y75xk1zkcv3imskvd44nqjp5m2dzmsw33nzji"; depends=[fields]; }; - stinepack = derive2 { name="stinepack"; version="1.3"; sha256="0kjpcjqkwndqs7cyc6w62z1nnkqmhkifz2w0bi341jh0ybmak4fq"; depends=[]; }; + stilt = derive2 { name="stilt"; version="1.3.0"; sha256="0b1bs849hw2wcvaldybxk8h8wgwl6p7x4i7winncvngmhplgrvx4"; depends=[fields]; }; + stima = derive2 { name="stima"; version="1.2"; sha256="1784807cdscjy441f41bbqq7fx7c59c4mwwnhg1nnizybnwa993r"; depends=[rpart]; }; + stinepack = derive2 { name="stinepack"; version="1.4"; sha256="0crl77gr4x2bz2zp0a0lqiw5iqlrcx7vj67igkbzg64d1fxai85d"; depends=[]; }; stlplus = derive2 { name="stlplus"; version="0.5.1"; sha256="14728xsm982z9sg4rbqg307pbwqlsiyzj8z3sr9wr6fi0dayf6z5"; depends=[lattice Rcpp yaImpute]; }; stm = derive2 { name="stm"; version="1.3.3"; sha256="1b1i4r161i92f5q63zjfghzg39bw9d2rqdxx0y6zjd8n2p0ni3wv"; depends=[data_table glmnet lda Matrix matrixStats quadprog quanteda Rcpp RcppArmadillo slam stringr]; }; stmCorrViz = derive2 { name="stmCorrViz"; version="1.3"; sha256="1a4pckrbzsihyf1bqvw3cl0hxrc4yq1pnkgxgf4b8jday6zkxwcv"; depends=[jsonlite SnowballC stm tm]; }; stmgp = derive2 { name="stmgp"; version="1.0"; sha256="1v6ahg4icyrz8p0lfiyi2x90allhjvcq8rycinas5mffg7xgpv7d"; depends=[MASS]; }; stmgui = derive2 { name="stmgui"; version="0.1.6"; sha256="1fn2m5l7y3p1riw39g6r3hpjxdccygih7yipp7dvc4msl9fm4h5c"; depends=[markdown shiny shinyBS shinyjs shinythemes stm tm]; }; - stminsights = derive2 { name="stminsights"; version="0.2.0"; sha256="0s4gnb3cb5vb4x4vmwa2dz7l7m8d0mqhrc8lmaa912s16y05y63z"; depends=[dplyr ggplot2 ggraph ggrepel huge igraph purrr scales shiny shinyBS shinydashboard shinyjs stm stringr tibble tidygraph]; }; + stminsights = derive2 { name="stminsights"; version="0.2.2"; sha256="13b94z4wp24hbmwz1hkyds2p7adp48rvp6rd7lh0l3qm0k3q6krb"; depends=[dplyr ggplot2 ggraph ggrepel huge igraph purrr readr scales shiny shinyBS shinydashboard shinyjs stm stringr tibble tidygraph]; }; stoRy = derive2 { name="stoRy"; version="0.1.2"; sha256="1n2ivdv6fa3qkk2xhgcy8cixpbw6mijr4p8q34q8d9fvh9qs9g11"; depends=[data_tree R6]; }; stocc = derive2 { name="stocc"; version="1.30"; sha256="0xpf9101094l5l75p9lr64gwh2b8jh4saw6z6m2nbn197la3acpw"; depends=[coda fields Matrix rARPACK truncnorm]; }; stochprofML = derive2 { name="stochprofML"; version="1.2"; sha256="0gqfm2l2hq1dy3cvg9v2ksphydqdmaj8lppl5s5as2khnh6bd1l1"; depends=[MASS numDeriv]; }; stochvol = derive2 { name="stochvol"; version="1.3.3"; sha256="0cg61djjfw4jmq71g8kddrihdy9n2vlpzlf7kl2f3p8njc1f8kk2"; depends=[coda Rcpp RcppArmadillo]; }; stockR = derive2 { name="stockR"; version="1.0.68"; sha256="0pgyxh19csv21vgji1sjpqaaqb1wwz62mnsf85a97ba9aph9lxwb"; depends=[gtools]; }; - stocks = derive2 { name="stocks"; version="1.1.3"; sha256="0zpmx32dxv672ifk1m725ww286g4r09dvxvnk146vpwlk4mk11d0"; depends=[dvmisc Hmisc lubridate quantmod rbenchmark RColorBrewer Rcpp zoo]; }; + stocks = derive2 { name="stocks"; version="1.1.4"; sha256="0b6rl7pfkgzbpwnv7zzkr36hs5f1zb60d16ijslf7g9m25vvcyg6"; depends=[dvmisc Hmisc lubridate quantmod rbenchmark RColorBrewer Rcpp TTR zoo]; }; stoichcalc = derive2 { name="stoichcalc"; version="1.1-3"; sha256="0z9fnapibfp070jxg27k74fdxpgszl07xiqfj448dkydpg8ydkrb"; depends=[]; }; stopwords = derive2 { name="stopwords"; version="0.9.0"; sha256="050v3hq1wd3w83zrp76nv6n67qsf5fss2cbihb6waijancm7zfzh"; depends=[ISOcodes]; }; - stormwindmodel = derive2 { name="stormwindmodel"; version="0.1.0"; sha256="1pxkb0ijx04c4bk6szxhj8lxq6x76m8pyhxpf8xq63h4gh57fxh3"; depends=[dplyr ggplot2 lubridate maps plyr stringr tidyr weathermetrics]; }; - storr = derive2 { name="storr"; version="1.2.0"; sha256="0rsj84yfvy3y02cv0s25fq6ji4rfh7nnrpacbka0lhrxf698h5ga"; depends=[digest R6]; }; + stormwindmodel = derive2 { name="stormwindmodel"; version="0.1.1"; sha256="16w6si2icpsyhkn0d3l6sh64nj6ynyymp7jxfwa792ds2wrz2mkm"; depends=[dplyr ggplot2 lubridate maps plyr stringr tidyr weathermetrics]; }; + storr = derive2 { name="storr"; version="1.2.1"; sha256="0409gb6wji3cjxkdcd0wc3jvsx61h3rxd8a3nr018y8rh1rpsaj6"; depends=[digest R6]; }; stosim = derive2 { name="stosim"; version="0.0.14"; sha256="10k8j7manskjsrjc1l44yhy682b1qh0k2jx3cs5k69j2z42mnhmk"; depends=[Rcpp]; }; - stplanr = derive2 { name="stplanr"; version="0.2.5"; sha256="0r386bvsmglap6cxs6k3mn8bdahlbxb3qv2k4iqg2fr2r62dalf7"; depends=[curl dplyr geosphere httr igraph jsonlite lubridate lwgeom maptools nabor openxlsx R_utils raster Rcpp RcppArmadillo readr rgdal rgeos rlang sf sp stringi stringr]; }; - stpm = derive2 { name="stpm"; version="1.6.9"; sha256="1pj8lxych7fgrimi5c237f4vi6yc51ya3zwcq0qk3py96nixcpxn"; depends=[knitcitations nloptr Rcpp RcppArmadillo sas7bdat survival]; }; + stplanr = derive2 { name="stplanr"; version="0.2.6"; sha256="1v8x8gql4y6avxkpnjg4wb31hwim3admshwp4wcvfingxvzplxb2"; depends=[curl dplyr geosphere httr igraph jsonlite lubridate lwgeom maptools nabor openxlsx R_utils raster Rcpp RcppArmadillo readr rgdal rgeos rlang sf sp stringi stringr]; }; + stpm = derive2 { name="stpm"; version="1.7.7"; sha256="1l40zb9qwshg7saqmgi7c49a3jd93ycrbvmysgzs0q8pl94vgcfs"; depends=[knitcitations MASS nloptr Rcpp RcppArmadillo sas7bdat survival]; }; stpp = derive2 { name="stpp"; version="2.0-3"; sha256="18icnfrlrcibrpw7vqkrhzfx880ak24xk6llwgiqw18r929mq1hw"; depends=[ggplot2 gridExtra KernSmooth plot3D rgl rpanel spatstat splancs]; }; strandCet = derive2 { name="strandCet"; version="1.0"; sha256="019cacj0g9f6i8v03rq7qyph7f14d8n0qw0axvczijvnk99q602a"; depends=[boot corpcor MASS minpack_lm mvtnorm numDeriv]; }; stranger = derive2 { name="stranger"; version="0.3.3"; sha256="0p0ssba5q192g7pviv1shmh1lpcdjmzdim3rp1qs3hrd1d3pn4vq"; depends=[assertthat data_table dplyr ggplot2 tidyr]; }; strap = derive2 { name="strap"; version="1.4"; sha256="0gdvx02w0dv1cq9bb2yvap00lsssklfnqw0mwsgblcy2j6fln7b0"; depends=[ape geoscale]; }; strat = derive2 { name="strat"; version="0.1"; sha256="1axxrp750kjzcgxjdqfscjmryv1mkv4l23zk8k23z8l4ymhd2f5w"; depends=[Hmisc Rcpp RcppArmadillo]; }; + stratEst = derive2 { name="stratEst"; version="0.1.0"; sha256="06xddfgddrcd0fjc2hiqmxh9i7szrvay5phhd7k5y1bdmjav7q2c"; depends=[Rcpp RcppArmadillo]; }; strataG = derive2 { name="strataG"; version="2.0.2"; sha256="1rf1xf07yb0dzasgig9sfm4i9ggdkjgy5iiysqgdapk3sxs26c8r"; depends=[adegenet ape apex copula data_table DT ggplot2 gridExtra Hmisc pegas phangorn RColorBrewer Rcpp shiny shinyFiles survival swfscMisc]; }; stratbr = derive2 { name="stratbr"; version="1.2"; sha256="15vkymmc61yz9szhfhc5663hfyqvh499ahwhr9mv1lhv5bikk0kb"; depends=[Rglpk snowfall stratification]; }; strategicplayers = derive2 { name="strategicplayers"; version="1.0"; sha256="19vijrlzawd701vvk9ig7yhzbirh39dxxcwfz8ywwvxxiaky5x55"; depends=[sna]; }; @@ -11732,28 +12243,31 @@ in with self; { stratvns = derive2 { name="stratvns"; version="1.0"; sha256="1bw9l389lxiji4h7hrsshf24v135h6la9dg3xxjly53d4fi56ifh"; depends=[MultAlloc Rglpk sampling snowfall stratification]; }; stream = derive2 { name="stream"; version="1.3-0"; sha256="0wj6j070wmiw50vmjs075jm7k7aaryq4qm8dnj522vr7g0ryvkdh"; depends=[animation BH clue cluster clusterGeneration dbscan fpc MASS mlbench proxy Rcpp]; }; streamMOA = derive2 { name="streamMOA"; version="1.1-4"; sha256="09vspcz806j2f397hr8h685vy4xbx419bbha91f44s3bhks1y7fr"; depends=[rJava stream]; }; - streamR = derive2 { name="streamR"; version="0.4.3"; sha256="174iliizvr050mm3z9gz44f264xp1kclbvq1amynqal2kv8k7yj1"; depends=[ndjson RCurl rjson]; }; + streamR = derive2 { name="streamR"; version="0.4.4"; sha256="0xb0bzp3axflwrbxc6zsscmq8bn7qhlsk00l10qlxm4h1mh8xnlb"; depends=[ndjson RCurl rjson]; }; streambugs = derive2 { name="streambugs"; version="1.0"; sha256="1dyh5rwi47dn584nyy7f7vg5j5nlpz7ygcl8lwkj7prahplmzg5d"; depends=[deSolve]; }; stressr = derive2 { name="stressr"; version="1.0.0"; sha256="00b93gfh1jd5r7i3dhsfqjidrczf693kyqlsa1krdndg8f0jkyj7"; depends=[lattice latticeExtra XML xts]; }; + strex = derive2 { name="strex"; version="0.1.2"; sha256="12hbzlkihzvmyd8qx147bk57cia2db4w9k6wh7csbbqp95cy77bi"; depends=[checkmate glue magrittr matrixStats ore purrr Rcpp rlang stringr tibble]; }; strider = derive2 { name="strider"; version="1.1"; sha256="00r6gbvwmla5h27iyi7rdfd0kr4alxz19fd7g2ba0in3779za3sw"; depends=[BH Rcpp]; }; stringb = derive2 { name="stringb"; version="0.1.13"; sha256="004bp75yhrgr480v9774kfq7z5l9z0761cnrwj4yk7fxygk89a1x"; depends=[backports]; }; stringdist = derive2 { name="stringdist"; version="0.9.5.1"; sha256="0gap1g9xwhp0zxqsznkc2carpvi80z03prr4q8m528684lznx2xa"; depends=[]; }; stringformattr = derive2 { name="stringformattr"; version="0.1.2"; sha256="0x56k30clj5ajk0qg5sr8b9l0asz6ldivwr1ddy1vp1djliih1fx"; depends=[stringr]; }; - stringi = derive2 { name="stringi"; version="1.2.3"; sha256="1sgg4krw03qkz1n4dwiya0djggk7giwd0w21qlp0pfjqi0rxq6qx"; depends=[]; }; + stringi = derive2 { name="stringi"; version="1.2.4"; sha256="1y46xab7g1lsjmilp4hbl7pjad6pcxp66hdj8wnfdg9518h0lmq1"; depends=[]; }; stringr = derive2 { name="stringr"; version="1.3.1"; sha256="0hq3ybz7clnifi5wdm2s6p2i0kzljdkv26blg6yphng472h8x2vs"; depends=[glue magrittr stringi]; }; - strip = derive2 { name="strip"; version="0.1.1"; sha256="18pz6ix6d661fvg1k1yyyiiwa1gdixynmpxl725ffd9lpykmfqbw"; depends=[rlist]; }; + strip = derive2 { name="strip"; version="0.1.7"; sha256="1nzl5513s0gfd3mhnp9xzmhaj8q46lmdpv7j5jni8f50pnm3niay"; depends=[rlist]; }; stripless = derive2 { name="stripless"; version="1.0-3"; sha256="08mdp7kq6r5bk77j09477d1dnn7iwa346pr24b5bqsxwnbknyrsr"; depends=[lattice]; }; striprtf = derive2 { name="striprtf"; version="0.5.1"; sha256="1pv67grm8fb1plsfxrfrmv0yk6cjnf44ssawddlcxy9mvg3ka5mm"; depends=[magrittr Rcpp stringr]; }; strucchange = derive2 { name="strucchange"; version="1.5-1"; sha256="0cdgvl6kphm2i59bmnppn1y3kv65ml111bk7yzpcx7vv8wh2w3kl"; depends=[sandwich zoo]; }; structSSI = derive2 { name="structSSI"; version="1.1.1"; sha256="06rwmrgqc4qy4x0bhlshjdsjxfmp5fr9d1wjglhlb1gbp72fmkdv"; depends=[ggplot2 igraph multtest reshape2 rjson]; }; structree = derive2 { name="structree"; version="1.1.5"; sha256="0m14jzhmkfn8dpxjzj8xh9zf6cggqj3awnfz7zh1xlkkka91jz8d"; depends=[lme4 mgcv penalized]; }; strum = derive2 { name="strum"; version="0.6.2"; sha256="0f5cb7cfvqhmnv4sjfr58lns4fclmr8iyka595zddy9f6dv5rqp1"; depends=[graph MASS Matrix pedigree Rcpp RcppArmadillo Rgraphviz]; }; - strvalidator = derive2 { name="strvalidator"; version="2.0.0"; sha256="03f7clhs1hda3lkard7lbx4pfyqvhwm35r3d9sz2yksp5s78wbjk"; depends=[data_table ggplot2 gridExtra gtable gWidgets2 gWidgets2RGtk2 MASS plyr RGtk2 scales]; }; + strvalidator = derive2 { name="strvalidator"; version="2.1.0"; sha256="15qpdbqr740bn2zimfyspj6arzigc39hdf73yy9lbk6vhiq43yyq"; depends=[data_table ggplot2 gridExtra gtable gWidgets2 gWidgets2RGtk2 MASS plyr RGtk2 scales]; }; stsm = derive2 { name="stsm"; version="1.9"; sha256="18ypmkd7l7m7qkahb0nqf8f1m8g4irxlw48v2ms0dq1bsnhbzx7j"; depends=[KFKSDS]; }; stsm_class = derive2 { name="stsm.class"; version="1.3"; sha256="19jrja5ff31gh5k2zqhqsyd7w2ivr4s6bkliash6x8fmd22h5zs8"; depends=[]; }; + stuart = derive2 { name="stuart"; version="0.7.3"; sha256="0xd85ijshhsyzkm22vacjl2p7ni8x3zfypmrwmvvba5x9l82s3hi"; depends=[]; }; stubthat = derive2 { name="stubthat"; version="1.2.1"; sha256="130naxzvswcyadwcgldvwnxxdxbfwx5vljac7901vn3ahjp75d8z"; depends=[testthat]; }; styler = derive2 { name="styler"; version="1.0.2"; sha256="0rsbaszwr0089imcwracjss52ivjzlcba9j0sqvpza4qgd0yjmd4"; depends=[backports cli enc magrittr purrr rematch2 rlang rprojroot tibble withr]; }; - stylo = derive2 { name="stylo"; version="0.6.7"; sha256="0l5msnv6sk90p3l7ma2q31yn93y1zj86y5hzzg2fws4r0pi09p19"; depends=[ape class e1071 lattice pamr tcltk2 tsne]; }; + stylest = derive2 { name="stylest"; version="0.1.0"; sha256="0dr7j9fh8kp6wsqql38s3rk596xl6m9nx0w1l5v25hv2bphidxzr"; depends=[corpus Matrix]; }; + stylo = derive2 { name="stylo"; version="0.6.8"; sha256="1j27hyjsjs3y76lb0pn92ng23q0lk7w69vdx3429q610dixqdfim"; depends=[ape class e1071 lattice pamr tcltk2 tsne]; }; suRtex = derive2 { name="suRtex"; version="0.9"; sha256="0xcy3x1079v10bn3n3y6lxignb9n3h57w4hhrvzi5y14x05jjyda"; depends=[]; }; subcopem2D = derive2 { name="subcopem2D"; version="1.2"; sha256="1yrjqg3y6i5m6k0zljq1p1pciicmc1vig3qd0wxaicz708rbp3yq"; depends=[]; }; subdetect = derive2 { name="subdetect"; version="1.1"; sha256="1bcc13avs5w9vmwyf71cnjd2kwmcavmzpwyv8gvsn61n7b4j8wlk"; depends=[]; }; @@ -11763,7 +12277,7 @@ in with self; { submax = derive2 { name="submax"; version="1.1.1"; sha256="0b9x55gqzw20smr3hx9izvyr0i8zv0h03hadn4c7ks7w8ga5i0kj"; depends=[mvtnorm sensitivityfull]; }; subniche = derive2 { name="subniche"; version="0.9.7"; sha256="1jsdcaf6d38j7c0ppjyilj0jd2dbpdldw6w4prmsbmx8mh7lplww"; depends=[ade4]; }; subplex = derive2 { name="subplex"; version="1.5-4"; sha256="10cbgbx1bgsax5z7gz6716g360xpq4mvq19cf4qqrxv02mmwz57z"; depends=[]; }; - subprocess = derive2 { name="subprocess"; version="0.8.2"; sha256="1qyl8726vq94vqd6iyh9kca6wwxi3g7yv4b784wn2ifrm4waixxd"; depends=[]; }; + subprocess = derive2 { name="subprocess"; version="0.8.3"; sha256="00720hj685449vhjqm9q6rrsn5jyxnxwq3pgxpbsnrhmwa697w89"; depends=[]; }; subrank = derive2 { name="subrank"; version="0.9.9.1"; sha256="19lgw7248jq6b34i17c7vw208wsvmppni7njswd02i9xdgyjn95z"; depends=[]; }; subsamp = derive2 { name="subsamp"; version="0.1.0"; sha256="1bfz2z2qy1war3id8qr1asygwvwxgf2hhlh075hr6bjdkxz0j0nd"; depends=[]; }; subscore = derive2 { name="subscore"; version="2.0"; sha256="1vscmzw6ama2kc7ic6b2rfbbczcpyhp0m4dd5khg9vkyihww5b5h"; depends=[CTT irtoys]; }; @@ -11775,14 +12289,14 @@ in with self; { subtype = derive2 { name="subtype"; version="1.0"; sha256="1094q46j0njkkqv09slliclp3jf8hkg4147hmisggy433xwd19xh"; depends=[penalized ROCR]; }; sudoku = derive2 { name="sudoku"; version="2.6"; sha256="13j7m06m38s654wn75kbbrin5nqda4faiawlsharxgrljcibcbrk"; depends=[]; }; sudokuAlt = derive2 { name="sudokuAlt"; version="0.1-11"; sha256="1hv9d99ir1xz6p0arxr77dv5qb45sr8jhapm6wf755l7pxlqqklq"; depends=[magrittr]; }; - sugrrants = derive2 { name="sugrrants"; version="0.1.2"; sha256="0l9v2wqb8wsp002gc802xcawwyv56rn765ipp6d1mzds3sp438h7"; depends=[dplyr ggplot2 lubridate purrr readr rlang tidyr timeDate tsibble]; }; + sugrrants = derive2 { name="sugrrants"; version="0.2.0"; sha256="0860jc979f5j0697hksx5bzrrmq7jqi9461w3f1m9xbgd0d01ag2"; depends=[dplyr ggplot2 gtable lubridate rlang]; }; sumFREGAT = derive2 { name="sumFREGAT"; version="1.0.0"; sha256="13g3px3c3dxacrvgwrvqdp8lm7k185npr0dlq3siq9x9mgjr7hsj"; depends=[Matrix]; }; summariser = derive2 { name="summariser"; version="0.1.0"; sha256="0a6wyb0r1i0cynld002q96ylr58jz76n5jqjz8gm6a3csjn9qss7"; depends=[dplyr ggplot2 lazyeval plotrix]; }; - summarytools = derive2 { name="summarytools"; version="0.8.5"; sha256="0455csyz3hd9armpw18r1lgbzbyr6i43wyampp4n0s0lr95flp46"; depends=[htmltools lubridate matrixStats pander pryr rapportools RCurl]; }; - sunburstR = derive2 { name="sunburstR"; version="2.0.0"; sha256="1gkrgm90ps5i1k5cqdw6sbvd4jgbk4yq82gwd5m1z1jhv1shfsf4"; depends=[d3r dplyr htmltools htmlwidgets]; }; + summarytools = derive2 { name="summarytools"; version="0.8.8"; sha256="0z836m6ib9bznwcawn6xf8gck05ydxwi3bx4jbrbyqql4kci8zwb"; depends=[htmltools lubridate matrixStats pander pryr rapportools RCurl]; }; + sunburstR = derive2 { name="sunburstR"; version="2.1.0"; sha256="0dg988fnm9z1p14j2l604q4aqb83vrijvafbpc1l4kn0dg3cs1ff"; depends=[d3r dplyr htmltools htmlwidgets]; }; suncalc = derive2 { name="suncalc"; version="0.4"; sha256="190bnh26bl26piq6512ijrx2hygzdscryjsjyz8y4ara8bf646r3"; depends=[V8]; }; - sundialr = derive2 { name="sundialr"; version="0.1.0"; sha256="0r6nijpj6vbz9ssrdhxn01frhahnqg4n1bsfg6d43c1smj563y6m"; depends=[Rcpp]; }; - supc = derive2 { name="supc"; version="0.1"; sha256="1cq0lr04m409xr3i1hphww4ldr8z3kqq2gmp7hm3yp0iz2gy3m9a"; depends=[BH Rcpp]; }; + sundialr = derive2 { name="sundialr"; version="0.1.1"; sha256="1f56hqh9ah5chwwr4ak39hc4q49hpzz398spifkv6zyd0sy8kc8s"; depends=[Rcpp]; }; + supc = derive2 { name="supc"; version="0.2.1"; sha256="121dy7ymvxvq3ksf17hg0df74ycd2nag2z2ggnw4p2rwzj99vgc5"; depends=[BH Rcpp]; }; supclust = derive2 { name="supclust"; version="1.0-7"; sha256="0437pccagvqv6ikdsgzpif9yyiv6p24lhn5frk6yqby2asj09727"; depends=[class rpart]; }; supcluster = derive2 { name="supcluster"; version="1.0"; sha256="1rkd4bpzzvzbmqaj907pqv53hxcgic0jklbsf5iayf0ra768b5w6"; depends=[gtools mvtnorm]; }; superMDS = derive2 { name="superMDS"; version="1.0.2"; sha256="0jxbwm3izk7bc3bd01ygisn6ihnapg9k5lr6nbkr96d3blpikk04"; depends=[]; }; @@ -11792,22 +12306,21 @@ in with self; { supernova = derive2 { name="supernova"; version="1.1"; sha256="0n34fkscml6ldbcr6kk8c6n4f5z4j398qn1vsp06h3b0h6sl5rrb"; depends=[]; }; superpc = derive2 { name="superpc"; version="1.09"; sha256="1p3xlg2n7p57n54g2w4frfrng5vjh97kp6ax4mrgvj3pqmd1m69z"; depends=[survival]; }; supervisedPRIM = derive2 { name="supervisedPRIM"; version="2.0.0"; sha256="1j5gsy119pvrhkkg048lyk6hjvn9x1bhmfy5g824gj3k1w5slrib"; depends=[prim]; }; - support = derive2 { name="support"; version="0.1.1"; sha256="0031dqkjwsi7s7bmvidjnivqxlh43q0ak2jnqnzm8h7sp0kfwjwf"; depends=[BH doParallel matrixStats MHadaptive nloptr randtoolbox Rcpp RcppArmadillo]; }; + support = derive2 { name="support"; version="0.1.2"; sha256="1ih32hhgkbrdmjprqqf1sqlijgibzsrzh37i8jfmfb8n0d6h4x5a"; depends=[BH doParallel matrixStats MHadaptive nloptr randtoolbox Rcpp RcppArmadillo]; }; support_BWS = derive2 { name="support.BWS"; version="0.2-0"; sha256="1yfjpr9v9zsbkysm3r6zk9r0a072g038lmj9wk4014a3rk9kmm80"; depends=[]; }; support_BWS2 = derive2 { name="support.BWS2"; version="0.1-2"; sha256="069n7kxl74v42rjxb153yk1p81izkbvi7k6r8zd5d78jx54w7igb"; depends=[]; }; support_CEs = derive2 { name="support.CEs"; version="0.4-1"; sha256="1rbyl7v6m07dsp08kkk9020bh39rhx89q7d05rc5kxb6f7y66jyz"; depends=[DoE_base MASS RCurl simex XML]; }; supportInt = derive2 { name="supportInt"; version="1.1"; sha256="14fh75sds05c06xkcfbijd8my3sa9kpnczzh96xx0gwj1193yya9"; depends=[ProfileLikelihood]; }; sure = derive2 { name="sure"; version="0.2.0"; sha256="0gwr2j321i2vq98rin5b1m4sl123dm1nih1ghcmj0zd1wd6x5x54"; depends=[ggplot2 goftest gridExtra]; }; surface = derive2 { name="surface"; version="0.4-1"; sha256="0z7fh09hjmxfmqzi588gjwqqlpj1a475aixrnvy911lkx3zfk146"; depends=[ape geiger MASS ouch]; }; - surrosurv = derive2 { name="surrosurv"; version="1.1.24"; sha256="0c18pjkqgp5nm927jvcbgpfa4knrhnsq0492d1ysfr1li8sf9n7q"; depends=[copula eha lme4 MASS Matrix msm mvmeta optextras optimx parfm SurvCorr survival]; }; + surrosurvROC = derive2 { name="surrosurvROC"; version="0.1.0"; sha256="1dpqr9dqzckgvdfrb2ndxazra0lbp6db9wbjch4vig3kyz6nyw4y"; depends=[survival]; }; surv2sampleComp = derive2 { name="surv2sampleComp"; version="1.0-5"; sha256="0pk70q33il9clz0ikzx1cypg5ygnsqp5hgk67xczzbidksjzs4dn"; depends=[flexsurv plotrix survival]; }; survAUC = derive2 { name="survAUC"; version="1.0-5"; sha256="0bcj982ib1h0sjql09zbvx3h1m96jy9q37krmk6kfzw25ms6bzzr"; depends=[survival]; }; survAWKMT2 = derive2 { name="survAWKMT2"; version="1.0.0"; sha256="1cv39rf1ia4nwrri9d9izy6lxndnfwqy2vzrb9rrxga2qplxl79k"; depends=[survival]; }; survAccuracyMeasures = derive2 { name="survAccuracyMeasures"; version="1.2"; sha256="1i41xkvqpxpq9spryh1syp57ymlzw71ygdjqn41rv8jjc9q52x9g"; depends=[Rcpp RcppArmadillo survival]; }; survBootOutliers = derive2 { name="survBootOutliers"; version="1.0"; sha256="1gfh2n1kd1m4bpd1j7islm5ar1qmzycnmfpb8zl8ghv0z5rf5f09"; depends=[survival]; }; survC1 = derive2 { name="survC1"; version="1.0-2"; sha256="1bidjhq3k5ab7gqj1b2afngip7pp6c9c7q0m6ww7h7i2vg505l7v"; depends=[survival]; }; - survClip = derive2 { name="survClip"; version="0.2.3"; sha256="1s82z8cld6qlg6dv0l4j4vyg58ji9qp7xkg6sxd9s88fpcjdnz3g"; depends=[checkmate clipper corpcor elasticnet FactoMineR graph qpgraph rrcov survival]; }; - survHE = derive2 { name="survHE"; version="1.0.6"; sha256="128pjnm1m12qqhnz2izwmir64m99389qjr73vcqr19dgbkbgv28c"; depends=[BH flexsurv Rcpp RcppEigen rms rstan StanHeaders xlsx]; }; + survHE = derive2 { name="survHE"; version="1.0.64"; sha256="1vqfvmr2dza8hw61b5q0wl22b7gpca7llpq5swdclnll1narff5i"; depends=[BH flexsurv Rcpp RcppEigen rms rstan StanHeaders xlsx]; }; survIDINRI = derive2 { name="survIDINRI"; version="1.1-1"; sha256="03lsypx189zm28gv764gdq24a18jj3kpdk91ssa501qxj5jv7v29"; depends=[survC1 survival]; }; survJamda = derive2 { name="survJamda"; version="1.1.4"; sha256="14ly1g548ysm8jgsyrhj12zmd6i2lca7rsgby3jbwikyqyk1mx5q"; depends=[ecodist survcomp survival survivalROC survJamda_data]; }; survJamda_data = derive2 { name="survJamda.data"; version="1.0.2"; sha256="0a010v2ar48i5m0jiqjvdyqm93ckfgfmcmym9a02h0rclnizd75r"; depends=[]; }; @@ -11816,9 +12329,9 @@ in with self; { survRM2 = derive2 { name="survRM2"; version="1.0-2"; sha256="0pvp65c1kkbkcci4l3cvq4a5krmv58jwb9abz5225ql6jyawzlsw"; depends=[survival]; }; survRM2adapt = derive2 { name="survRM2adapt"; version="1.0-1"; sha256="1r3jvjbc2sb7b00s95b3sdx4d99rmrnd573fx1n4914ydiggi9nn"; depends=[survival]; }; survSNP = derive2 { name="survSNP"; version="0.24"; sha256="0mzwcp8zfqvsiapa446si9qb6wyymnw5zj6acj6f2cfjpyi76k4w"; depends=[foreach lattice Rcpp survival xtable]; }; - surveillance = derive2 { name="surveillance"; version="1.16.1"; sha256="0pr6fy0n684ncl9hf0bp6jfahmihziyyfj2zwnqigkc4bcl091h3"; depends=[MASS Matrix nlme polyCub Rcpp sp spatstat xtable]; }; + surveillance = derive2 { name="surveillance"; version="1.16.2"; sha256="1k6wpzsagsq2ixpdhx6b4zzb5wv2j95nsmxyfwvlxkxafahx986h"; depends=[MASS Matrix nlme polyCub Rcpp sp spatstat xtable]; }; survexp_fr = derive2 { name="survexp.fr"; version="1.0"; sha256="12rjpnih0xld4dg5gl7gwxdxmrdmyzsymm7j05v98ynldd1jkjl8"; depends=[survival]; }; - survey = derive2 { name="survey"; version="3.33-2"; sha256="1c4q0005663b0y87ckmf1ra7gm2i5hnlw955pgb11bywh60hg9hl"; depends=[lattice Matrix survival]; }; + survey = derive2 { name="survey"; version="3.34"; sha256="09024mqkbm5aak9rsi9qw97d3xrq2dba3z2hyvydncygjmjymy65"; depends=[lattice Matrix minqa numDeriv survival]; }; surveybootstrap = derive2 { name="surveybootstrap"; version="0.0.1"; sha256="13rp6gj1dgdzcjbi2403pldygp1dyqx8zj0r1nvyghpi06x5gpb7"; depends=[dplyr functional plyr Rcpp RcppArmadillo stringr]; }; surveydata = derive2 { name="surveydata"; version="0.2.0"; sha256="1iwhjhazfy38dbcj224kz3zbw2nvpq01ry54wmmkg9d0n6mb02h4"; depends=[dplyr magrittr plyr purrr stringr]; }; surveyeditor = derive2 { name="surveyeditor"; version="1.0"; sha256="073219bcn1hlxl9ql6gncfvgn0m37pz5sb7h94nq6lf35dymq5zq"; depends=[]; }; @@ -11826,14 +12339,17 @@ in with self; { surveyplanning = derive2 { name="surveyplanning"; version="2.9"; sha256="0ad4122m78hbzhkkaspzpr62bl59w1j8z0qa67slqljjldhq1akv"; depends=[data_table laeken]; }; survidm = derive2 { name="survidm"; version="1.1.0"; sha256="1piwhb8zsqnw284xp0l3ajs8r9amyn8yfng19hkci574mkdgsw4f"; depends=[doParallel doRNG foreach KernSmooth np survival TPmsm]; }; survivALL = derive2 { name="survivALL"; version="0.9.3"; sha256="0lnvs7b097sl21gvnfafdprzvh197p1q4nzzagkdf4xm1xw8pj0h"; depends=[cowplot desiR ggplot2 ggthemes survcomp survival viridis]; }; - survival = derive2 { name="survival"; version="2.42-4"; sha256="0gnv6r6qrapw867gb9napa8f00dm15aw97lgn6556mn9i9k6d0k7"; depends=[Matrix]; }; + survival = derive2 { name="survival"; version="2.42-6"; sha256="1bsxc2fir9pbvdzy9n474fkl7har606h9zhspp0z67wnjpp48g73"; depends=[Matrix]; }; + survivalAnalysis = derive2 { name="survivalAnalysis"; version="0.1.0"; sha256="148l6qp9gwzpjh7hky9bayggal9cw629xabl34iklqvqlz1im7gb"; depends=[cowplot dplyr forcats ggplot2 gridExtra magrittr purrr rlang scales stringr survival survminer tibble tidyr tidytidbits]; }; survivalMPL = derive2 { name="survivalMPL"; version="0.2"; sha256="05bfa9fx841kh9g2jcs1dimsxkjnf4bxgamcnjpisx3a644c1gkn"; depends=[MASS survival]; }; survivalROC = derive2 { name="survivalROC"; version="1.0.3"; sha256="0wnd65ff5w679hxa1zrpfrx9qg47q21pjxppsga6m3h4iq1yfj8l"; depends=[]; }; survivalsvm = derive2 { name="survivalsvm"; version="0.0.5"; sha256="1b4hrdrqq1z0kfn8vpdwg54388m25df2s6w9i574x3mkxkmkjkga"; depends=[Hmisc kernlab Matrix pracma quadprog survival]; }; - survminer = derive2 { name="survminer"; version="0.4.2"; sha256="15npx3q7xf7sl7pbb1476khgfpqrvidqcb101iim3iym125sl54r"; depends=[broom cmprsk dplyr ggplot2 ggpubr gridExtra magrittr maxstat purrr scales survival survMisc tibble tidyr]; }; + survminer = derive2 { name="survminer"; version="0.4.3"; sha256="0bsjvs7q2ydxvvjka28zsgcpwabqqpvwvb8m5fhhx4rgwlwimfbf"; depends=[broom cmprsk dplyr ggplot2 ggpubr gridExtra magrittr maxstat purrr scales survival survMisc tibble tidyr]; }; survsim = derive2 { name="survsim"; version="1.1.5"; sha256="0194w1h3v4p546wibp3xyhy2r84w3p9r6ggzhlf11v8467mjy0l9"; depends=[eha statmod]; }; + survsup = derive2 { name="survsup"; version="0.0.1"; sha256="16j7ip9qr7q3drb8jzb7ha1ni1m8mr56686blnvlcwih5yqmfkb5"; depends=[broom colorspace dplyr ggplot2 gridExtra survival]; }; survtmle = derive2 { name="survtmle"; version="1.1.0"; sha256="0q1ym4a13xqy3lqjwg40wp28xlp1iqybwq7dd0gp6fnmx3n6373g"; depends=[dplyr ggplot2 ggsci Matrix plyr speedglm stringr SuperLearner tidyr]; }; - survutils = derive2 { name="survutils"; version="1.0.1"; sha256="09844i5nfyn0fm5i8ca96xz8dza21shh2f89w41zh17xaxvidjsw"; depends=[broom dplyr ggplot2 glue lazyeval magrittr purrr survC1 survival]; }; + survutils = derive2 { name="survutils"; version="1.0.2"; sha256="1ws4r5chz0cbf6vjmlj2xv9hmr968xyw8dc5g3j937xpbz40i75h"; depends=[broom dplyr ggplot2 glue lazyeval magrittr purrr survC1 survival]; }; + survxai = derive2 { name="survxai"; version="0.2.0"; sha256="09sk7i0bsk5ql8dibqyykyv95i945bf43xpr4gv22w73zwc0n8hh"; depends=[breakDown ggplot2 pec prodlim scales survival survminer]; }; sutteForecastR = derive2 { name="sutteForecastR"; version="0.1"; sha256="13dd0v3l3s7xb1wnpf6qvnvclzab87831z8bsxsq53vpb26xcw1b"; depends=[forecast forecastHybrid fracdiff robets]; }; svDialogs = derive2 { name="svDialogs"; version="1.0.0"; sha256="0xqppydfawnwk84kb5qiybwbcmv38vn4imgz01mz2pnq4xb80p97"; depends=[rstudioapi svGUI]; }; svDialogstcltk = derive2 { name="svDialogstcltk"; version="0.9-4"; sha256="16166f8i6nsg7palqmnlp5b9s91d6ja9n0zm6rcvd2fwnw2ljkr4"; depends=[svDialogs svGUI]; }; @@ -11848,10 +12364,9 @@ in with self; { svUnit = derive2 { name="svUnit"; version="0.7-12"; sha256="16iiryj3v34zbnk1x05g30paza7al1frqx52fkw8ka61icizsrf5"; depends=[]; }; svWidgets = derive2 { name="svWidgets"; version="0.9-45"; sha256="08cpsy4abypjnv33arsgxk5i0gpdvdzj60wa1b22ca1n7d35mc80"; depends=[svMisc]; }; svapls = derive2 { name="svapls"; version="1.4"; sha256="12gk8wrgp556phdv89jqza22zmsnachsydr5vlz38s664d2lplbg"; depends=[class pls]; }; - svars = derive2 { name="svars"; version="1.2.0"; sha256="06kg9z5clsgg65gjrcb456ppdwk8cja2cmzfwlwmnz5yf3m6lk8k"; depends=[clue copula DEoptim expm ggplot2 pbapply reshape2 steadyICA tsDyn vars zoo]; }; + svars = derive2 { name="svars"; version="1.2.1"; sha256="1kdnrwwrb903a53qr8ppwyw7p0nhgxwgpj2yyd0w248nwswfwhfz"; depends=[clue copula DEoptim expm ggplot2 pbapply reshape2 steadyICA strucchange tsDyn vars zoo]; }; svcm = derive2 { name="svcm"; version="0.1.2"; sha256="1lkik65md8xdxzkmi990dvmbkc6zwkyxv8maypv2vbi2x534jkhl"; depends=[Matrix]; }; svd = derive2 { name="svd"; version="0.4.1"; sha256="00plnwrjnp3majssr3qbz2zp25z9cfivgpggyfvy4lnc4av5qn3g"; depends=[]; }; - svdvis = derive2 { name="svdvis"; version="0.1"; sha256="1z3z86izl2gpxllpx56vn6kkdg9cjjikfd90hdjnfi4bmmpx50dn"; depends=[GGally ggplot2 gridExtra RColorBrewer reshape2 scales]; }; svdvisual = derive2 { name="svdvisual"; version="1.1"; sha256="02mzh2cy4jzb62fd4m1iyq499fzwar99p12pyanbdnmqlx206mc2"; depends=[lattice]; }; svenssonm = derive2 { name="svenssonm"; version="0.1.0"; sha256="0pvay9vfrcafaq270pq6glp2b74zdfgldksl13cwdb0wk7qx7731"; depends=[]; }; svgPanZoom = derive2 { name="svgPanZoom"; version="0.3.3"; sha256="09gfa2943bvmjpnhnc2nr85wddkv662k30pxsqvvvq1va64rzpkc"; depends=[htmlwidgets]; }; @@ -11869,47 +12384,51 @@ in with self; { swamp = derive2 { name="swamp"; version="1.4.1"; sha256="01w44d7rqh6q9wpapd3g7rzllhbm2brwilmna9vk2dwqx57jyim6"; depends=[amap gplots impute MASS]; }; swapClass = derive2 { name="swapClass"; version="1.0.1"; sha256="0wg6km261xdywakxi64dw4wwprbrkw217q4c6622z0mgm9sjgpym"; depends=[inline]; }; swatches = derive2 { name="swatches"; version="0.5.0"; sha256="1kivscgka8gn44rjj0s5sjan1s04znnyn0nd37a74zaik0hm8zs0"; depends=[colorspace httr pack stringr xml2]; }; - sweep = derive2 { name="sweep"; version="0.2.1"; sha256="0v6166p1h14klf1avqvry8jj3as498qnydksy0da8q1bp1sy007f"; depends=[broom devtools dplyr forecast lazyeval lubridate tibble tidyr timetk]; }; + swdft = derive2 { name="swdft"; version="0.0.1"; sha256="0971iyyw537n24wsm7wh126zgb7b3p9161sc2ny293qzbsb7hm1g"; depends=[]; }; + sweep = derive2 { name="sweep"; version="0.2.1.1"; sha256="0hfvgvzr5mh9niwpsr9jcly426dz457afrg4q5w13ahsasx7c9jg"; depends=[broom devtools dplyr forecast lazyeval lubridate tibble tidyr timetk]; }; sweidnumbr = derive2 { name="sweidnumbr"; version="1.4.1"; sha256="014zbp6a66gv7b0f2gmzvifllz266zrc14ihawksvyp1mcxz2ipg"; depends=[lubridate stringr]; }; swfscMisc = derive2 { name="swfscMisc"; version="1.2"; sha256="08p2crsx8zi6qprs14mhdyq9x5sjlp3a46c1zzvp6741an4fy640"; depends=[ggplot2 mapdata maps reshape2 spatstat]; }; - swgee = derive2 { name="swgee"; version="1.2"; sha256="1blfxhvcpfbc0k25xlkw8bxqdmgz3c9ksd9ww2p8k0dy5jd2z64r"; depends=[gee geepack mvtnorm]; }; + swgee = derive2 { name="swgee"; version="1.3"; sha256="0shacrrj72c2yhnbrrryy98yvxb16882zawvfhy1hpf39gspld7n"; depends=[gee geepack mvtnorm]; }; swirl = derive2 { name="swirl"; version="2.4.3"; sha256="1l7gwisk3sjslh6zh4cq3vxf5y84af2fr078cp4i86rw1w2j9d44"; depends=[digest httr RCurl stringr testthat yaml]; }; swirlify = derive2 { name="swirlify"; version="0.5.2"; sha256="07r6rdj079ryafdgs0p8jhnk4h7iqm7agh9wjhvm12abbwjr9g1x"; depends=[base64enc readr rmarkdown shiny shinyAce stringr swirl whisker yaml]; }; swissMrP = derive2 { name="swissMrP"; version="0.62"; sha256="1vy6h6c4v49zlsli77ilj4df8cfh67rqmki71v6j1aqw6kf3b649"; depends=[arm blme lme4 maptools sp]; }; switchnpreg = derive2 { name="switchnpreg"; version="0.8-0"; sha256="1vaanz01vd62ds2g2xv4kjlnvp13h59n8yqikwx07293ixd4qhpw"; depends=[expm fda HiddenMarkov MASS]; }; - switchr = derive2 { name="switchr"; version="0.12.7"; sha256="1ymvghjvbrbsgn49mp8f9n4kv81626pa4pv05hrx813ly8h30mmq"; depends=[RCurl RJSONIO]; }; + switchr = derive2 { name="switchr"; version="0.13.0"; sha256="1ij97gz31gxbmd0fwsw950vhgyd1py3xr4vlh7q98ba1ldzw8dg1"; depends=[RCurl RJSONIO]; }; swmmr = derive2 { name="swmmr"; version="0.8.1"; sha256="0zl00864x9q6a2aqdbqs3b5kw6z50wgr46c62kxk9xkns8317sa7"; depends=[dplyr purrr Rcpp readr tibble tidyr xts zoo]; }; - sybil = derive2 { name="sybil"; version="2.1.1"; sha256="1hgxlwpb5libvv126vh01ngxqs8hlvll8xjgxw5xxhfbgsadfp1m"; depends=[lattice Matrix]; }; + sybil = derive2 { name="sybil"; version="2.1.2"; sha256="1nfhh696hrajmxg3z36rjgp7bmgsxiz7hpyz00y0w1qkjczbbph3"; depends=[lattice Matrix]; }; sybilDynFBA = derive2 { name="sybilDynFBA"; version="1.0.1"; sha256="1zyhvlzkcwnq3sh6gvi0v1crq94mr16bc5jnh0g9c8rbdl4v8r4x"; depends=[sybil]; }; sybilccFBA = derive2 { name="sybilccFBA"; version="2.0.0"; sha256="0x0is1a56jyahaba6dk9inj5v248m8n46f70ynqyqp1xpiax1fkr"; depends=[Matrix sybil]; }; sybilcycleFreeFlux = derive2 { name="sybilcycleFreeFlux"; version="2.0.0"; sha256="0p3w7ipyrqrh7nf52h8qmr4fikyinm8an7npmcb7kwjd59rcy554"; depends=[MASS Matrix sybil]; }; sylcount = derive2 { name="sylcount"; version="0.1-0"; sha256="1dxbqbjyvkg7cx234icby9fjdjz1z4l4crqd7kv8m05fv69pg224"; depends=[]; }; - sylly = derive2 { name="sylly"; version="0.1-4"; sha256="14lw5sxrdvidk0465a7x0jz74cvqjbqv0wlqdy78qzbq4ilcmcaa"; depends=[]; }; + syllabifyr = derive2 { name="syllabifyr"; version="0.1.0"; sha256="1pd5zjgcmpxg7xqhcljxck80pjs84ihhkr5bl4i8h2mc6xqmy1kf"; depends=[dplyr purrr stringr tibble tidyr]; }; + sylly = derive2 { name="sylly"; version="0.1-5"; sha256="01c7mpsk32kcsjyzzv52bn8bj28lqbmyhhfa1cwhphva5c5nkqwx"; depends=[]; }; sylly_en = derive2 { name="sylly.en"; version="0.1-3"; sha256="0jw48qin172vv7skcpvcpi9wzgav5l9afzb09hhgcxvivbz6dl93"; depends=[sylly]; }; - symDMatrix = derive2 { name="symDMatrix"; version="1.0.0"; sha256="0xss7f7hkrf2afchccfavymylfybnp9nxawqxd2vdjni95kbd595"; depends=[]; }; + sym_arma = derive2 { name="sym.arma"; version="1.0"; sha256="13fhmgzd50mwlnz9m6nnn4arr4jdqf5h7dgli5lk08da9wx6cy69"; depends=[]; }; + symDMatrix = derive2 { name="symDMatrix"; version="2.0.2"; sha256="1lf0yhid47107c2vnr4g7xz4hrjb2cgr5zpgik4xf5gypli6xh6x"; depends=[bit ff LinkedMatrix]; }; symbolicDA = derive2 { name="symbolicDA"; version="0.5-3"; sha256="1zbr8b19m3fnzx0bdajl86s6aijiycjdibf9q83wd6mgpq66jb85"; depends=[ade4 cluster clusterSim e1071 rgl shapes XML]; }; symbols = derive2 { name="symbols"; version="1.1"; sha256="1234rx3divhg60p0h0zn11viqn51fm6b8876m6rip2i6z8vrg319"; depends=[shape]; }; symmoments = derive2 { name="symmoments"; version="1.2"; sha256="074k0285c0yri39zags420kjls6kjlvlhymg3r7y24h42zdy82d4"; depends=[combinat cubature multipol mvtnorm]; }; synRNASeqNet = derive2 { name="synRNASeqNet"; version="1.0"; sha256="05ncwbv8kvvhqqrxa8qq7s0jc6krs5a56ph04z50iwgd91rzyi7x"; depends=[GenKern igraph KernSmooth parmigene]; }; synbreed = derive2 { name="synbreed"; version="0.12-9"; sha256="0h85z9bhzgsr783qx3zjqyi461a0q52wbqifwm3gc1kapl5irxhd"; depends=[abind BGLR doBy doParallel foreach igraph lattice LDheatmap MASS qtl regress]; }; synbreedData = derive2 { name="synbreedData"; version="1.5"; sha256="16wv9r7p0n8726qv0jlizmkvnrqwjj1q4xaxvfmj9611rm47vckx"; depends=[]; }; - synchronicity = derive2 { name="synchronicity"; version="1.3.4"; sha256="1km5hx82gy71m5nc6pkcksv0dn32fylhg2axpdsnarrxva14mgdg"; depends=[BH bigmemory_sri Rcpp uuid]; }; + synchronicity = derive2 { name="synchronicity"; version="1.3.5"; sha256="1kgsk64aifjm3mfj102y3va7x1abypq2zi0cqbnjhl8fqyzp69hx"; depends=[BH bigmemory_sri Rcpp uuid]; }; synchrony = derive2 { name="synchrony"; version="0.3.7"; sha256="0lnin4aphy1lq20bn7nsdj0ymy2xdwjzdj2f89xq0qwkc7w7b5jb"; depends=[]; }; synlik = derive2 { name="synlik"; version="0.1.2"; sha256="1pscfqg5x7wpq3vp1i7fy29dwa7cw5g3kzxinanwrwbcznv9nyms"; depends=[Matrix Rcpp RcppArmadillo]; }; - synthACS = derive2 { name="synthACS"; version="1.4.2"; sha256="069cqmp9whal7z490jh6my8fqmmc4d2mm693xi4lsci2afc5plzc"; depends=[acs data_table Rcpp]; }; - synthpop = derive2 { name="synthpop"; version="1.4-4"; sha256="1q3vmsagdaha97182cf3ak51rjx018h8c72zv9v6slf7h71a0d53"; depends=[classInt foreign ggplot2 lattice MASS nnet party plyr polspline proto randomForest rpart]; }; - sys = derive2 { name="sys"; version="1.5"; sha256="0yskm5mzps4435yvld9nfp6i5lqdy5ckpdwydvvbyjznz5yv01x2"; depends=[]; }; - sysfonts = derive2 { name="sysfonts"; version="0.7.2"; sha256="1jl66pyw9khi117523zanjjzdpnpgqdqx190w829xc4ljxzi8n55"; depends=[]; }; + synoptReg = derive2 { name="synoptReg"; version="0.1.0"; sha256="1d1341b2al6qjhdx2s2ww9lfr3pz7hxc9gv41vgvh4bw8pxcd48d"; depends=[fields maps ncdf4 raster zoo]; }; + synthpop = derive2 { name="synthpop"; version="1.5-0"; sha256="0p0dszrh66xzfaiks89qli23c8qzq8gvi4d7wwlngkmq4k8y80rq"; depends=[classInt foreign ggplot2 lattice MASS mipfp nnet party plyr polspline proto randomForest rpart]; }; + sys = derive2 { name="sys"; version="1.6"; sha256="16jkdfik3n7h1cjas7qgxkv9z1fv8mcsm0mx6jsfyj180bp2a49v"; depends=[]; }; + sysfonts = derive2 { name="sysfonts"; version="0.8"; sha256="0wng902plryf2d8fc7k7m3jx11acz51kb2d91cqbyhq7xpk06z43"; depends=[]; }; sysid = derive2 { name="sysid"; version="1.0.4"; sha256="0fr9gf5yjin3zvz850z4r4pqc1r4mwx8d46sl64i4csdm9qnqagy"; depends=[bitops ggplot2 polynom reshape2 signal tframe zoo]; }; systemfit = derive2 { name="systemfit"; version="1.1-22"; sha256="19nmhidnzyk2wcwi5v28n9lkvylfw4in63vg5naqlk3w4fbwm2wb"; depends=[car lmtest MASS Matrix sandwich]; }; systemicrisk = derive2 { name="systemicrisk"; version="0.4.1"; sha256="1zimkyj58lk3iq5x4g6a76dain65j36s8c8jhx25sqjr5z2zmfsr"; depends=[lpSolve Rcpp]; }; + syt = derive2 { name="syt"; version="0.1.0"; sha256="1qagd67wznyc6sfvs22lw2lwnwap1hlpf92i0ck5aif514ysi886"; depends=[Matrix partitions]; }; syuzhet = derive2 { name="syuzhet"; version="1.0.4"; sha256="0wf4rls7v7h7zkq2k550d16aqvaij27iim85cwif7dkbinajfngi"; depends=[dplyr dtt NLP textshape tidyr zoo]; }; tRophicPosition = derive2 { name="tRophicPosition"; version="0.7.5"; sha256="0qmkdsl0b2aw485vpbdqxdlfwg5a3i5bj4l67xv6h51fnbyfqfiz"; depends=[ArgumentCheck coda data_table ggplot2 gridExtra hdrcde MCMCglmm plyr rjags]; }; - taRifx = derive2 { name="taRifx"; version="1.0.6"; sha256="10kp06hkdx1qrzh2zs9mkrgcnn6d31cldjczmk5h9n98r34hmirx"; depends=[plyr reshape2]; }; + taRifx = derive2 { name="taRifx"; version="1.0.6.1"; sha256="1qnp2562irhb516jfapmpg4260172ckc8jc3vxfkjsj7dnr35j6l"; depends=[plyr reshape2]; }; tab = derive2 { name="tab"; version="3.1.2"; sha256="1vc5swfy9p3bsv5bqqgk4w81apzk6d0m1xz0cbhii7rpn7x6zh1h"; depends=[gee survey survival xtable]; }; taber = derive2 { name="taber"; version="0.1.0"; sha256="07a18kn65b4cxxf1z568n7adp6y3qx96nrff3a3714x241sd5p6i"; depends=[dplyr magrittr]; }; tablaxlsx = derive2 { name="tablaxlsx"; version="1.2.2"; sha256="1q7ap1dmymf3aj5g860794jfn9zrn3qiwwcdzl95lsbpkhgyspmz"; depends=[openxlsx]; }; - table1 = derive2 { name="table1"; version="1.0"; sha256="06cidli3k8cxzvnj1n6vysamkd3qsim2i6ly9fl7rwiyj4g64rw8"; depends=[Formula]; }; + table1 = derive2 { name="table1"; version="1.1"; sha256="01r6zlhv3d0ggniv6aaszmzqbappy9zycayiwwlknbwrgiwkp58z"; depends=[Formula htmltools knitr]; }; table1xls = derive2 { name="table1xls"; version="0.4.0"; sha256="0ixbshbp9hkcg12hj32vgb5bp0pj4rbc3i6g1xdg2zhqp7zanics"; depends=[XLConnect]; }; tableHTML = derive2 { name="tableHTML"; version="1.1.0"; sha256="0j2dk11h0dvibppyxjix4pxr6i9ji9ipzaizsr1fadrpk5xzawd5"; depends=[htmltools magrittr shiny]; }; tableMatrix = derive2 { name="tableMatrix"; version="0.82.0"; sha256="1sskijhbqakamrk2rv7v5zpjsdi8jw0jl2z96l0vhsvsiq0cz1c8"; depends=[data_table]; }; @@ -11929,84 +12448,93 @@ in with self; { tailDepFun = derive2 { name="tailDepFun"; version="1.0.0"; sha256="1z2jrzly1adiwi8y0pndyfggpr0li6sjv9rkrc5mi47s0qjvr5qj"; depends=[copula cubature mvtnorm SpatialExtremes]; }; tailloss = derive2 { name="tailloss"; version="1.0"; sha256="0lmjgjs6d94b70i10vx66fyvlxm5swwqbcjsnqa3lmldzz6m4jc1"; depends=[MASS]; }; tailr = derive2 { name="tailr"; version="0.1.2"; sha256="1z47akvm2y05ih8q5ci03jm29xzp4m52shvbm4d9h2bipnq5crys"; depends=[glue rlang]; }; + taipan = derive2 { name="taipan"; version="0.1.2"; sha256="192sy5pgq74vs31p7jfn6svdzf9mk9ybppzhp1rlki1bagmm5f1r"; depends=[shiny]; }; + takos = derive2 { name="takos"; version="0.1.0"; sha256="0a26jmxccpyk36sah9nz7pqpkc1rd9kbwrvwh0r0zp7lwvxbjb8w"; depends=[baseline broom colorRamps data_table devEMF MASS minpack_lm pracma segmented sfsmisc smoother]; }; tangram = derive2 { name="tangram"; version="0.4"; sha256="1yj5vwc8jkiic4zjag9k7w3j6dibqw5zsi78q6gssshsi9z0zbgy"; depends=[base64enc digest htmltools magrittr R6 stringi stringr]; }; + tatest = derive2 { name="tatest"; version="1.0"; sha256="1yd9pdpdhxwpllnj5wxa7ly29qiw8qywx9lx0w3nizczlx35fgjy"; depends=[]; }; tatoo = derive2 { name="tatoo"; version="1.1.0"; sha256="1dsycdp3vln1m1w3nhhrr60x8raw6gbihjpav0d4ad8qla2fq8nh"; depends=[assertthat colt crayon data_table magrittr openxlsx purrr rlang stringi withr]; }; tau = derive2 { name="tau"; version="0.0-20"; sha256="1inpqc2cz1vvjkmp8h3jpjvnvj0y5cwbbj92jlq0322w5w45vip9"; depends=[]; }; - tauturri = derive2 { name="tauturri"; version="0.1.1"; sha256="0v0p1avrx9vgnrli4zp6figm3s9265k9yny0acblbjlmz3z8smai"; depends=[httr magrittr plyr purrr tibble]; }; + tauturri = derive2 { name="tauturri"; version="0.3.0"; sha256="014301f5mzy6vblqzb61bxjv46kdynmmrxjpxyvk01w1k8wkwfcn"; depends=[httr magrittr plyr purrr tibble]; }; tawny = derive2 { name="tawny"; version="2.1.7"; sha256="1b2v0cgkmhzxy36dcdn6hnbqk6l5ac5c3myvwryf7wlp19xi786d"; depends=[futile_logger futile_matrix lambda_r lambda_tools PerformanceAnalytics quantmod tawny_types xts zoo]; }; tawny_types = derive2 { name="tawny.types"; version="1.1.5"; sha256="1vg0hv91dif6cfqfzrf7m1qbk57fp8v97fp88whwmvs83yd521hq"; depends=[futile_logger futile_options lambda_r lambda_tools quantmod xts zoo]; }; - taxa = derive2 { name="taxa"; version="0.2.1"; sha256="0jh3isjlh6bx9mdhavg1c43aayq1zl5jqx3x4690lwgvphnzl1dn"; depends=[crayon dplyr jsonlite knitr lazyeval magrittr R6 rlang stringr taxize tibble tidyr]; }; - taxize = derive2 { name="taxize"; version="0.9.3"; sha256="05llhgv6a440va80fs45r8q6865q45gi4z28b1ldcln0dmx77r7c"; depends=[ape bold crul data_table foreach httr jsonlite natserv plyr reshape2 ritis rotl rredlist stringr tibble wikitaxa worrms xml2 zoo]; }; + taxa = derive2 { name="taxa"; version="0.3.1"; sha256="19bfgcibryvvqsqyjw3jgiw4raraas82w1dhkmnv9j7jny3v2677"; depends=[crayon dplyr jsonlite knitr lazyeval magrittr R6 rlang stringr taxize tibble tidyr]; }; + taxize = derive2 { name="taxize"; version="0.9.4"; sha256="1p5rlc93q62rk2z3qcq02xfrs4pz699qdakk05pz6g9rlbqj342m"; depends=[ape bold crul data_table foreach httr jsonlite natserv plyr reshape2 ritis rotl rredlist stringr tibble wikitaxa worrms xml2 zoo]; }; taxizedb = derive2 { name="taxizedb"; version="0.1.4"; sha256="15gj9i18ysd83v9fidrrvw938dah04i10ahi3wh5dgjs5fd5ch2s"; depends=[curl DBI dbplyr dplyr hoardr magrittr RMySQL RPostgreSQL RSQLite]; }; taxlist = derive2 { name="taxlist"; version="0.1.5"; sha256="17b7sdjjzragi8k08304idic0p8cj095h4p9vlpfidn8k6csrkv8"; depends=[foreign stringdist taxize vegdata]; }; - taxonomizr = derive2 { name="taxonomizr"; version="0.2.2"; sha256="0drzsbr23kr3da6bawjrz8rl976mai0vcz19fr5aypsliqz32b41"; depends=[data_table R_utils RSQLite]; }; + taxonomizr = derive2 { name="taxonomizr"; version="0.5.1"; sha256="0a8knjyjs9w9nk9xmbny2hh5yfgmwmrj0d9wa58i28x6a7x54aq9"; depends=[data_table R_utils RSQLite]; }; + taxotools = derive2 { name="taxotools"; version="0.0.4"; sha256="0jvzyr476s21q1n9vylrpsahwqlyx1qalpaprf8kncv8407c1lwl"; depends=[taxize wikitaxa]; }; tbart = derive2 { name="tbart"; version="1.0"; sha256="0m8l9ic7na70il6r9ha0pyrjwznbgjq7gk5xwa5k9px4ysws29k5"; depends=[Rcpp sp]; }; tbdiag = derive2 { name="tbdiag"; version="0.1"; sha256="1wr2whgdk84426hb2pf8iiyradh9c61gyazvcrnbkgx2injkz65q"; depends=[]; }; tbl2xts = derive2 { name="tbl2xts"; version="0.1.2"; sha256="1zz310253s6gz0hzzldil5r03mm7ngvvnba7hxm8fm9dhfmvkbj6"; depends=[dplyr lazyeval PerformanceAnalytics xts zoo]; }; - tcR = derive2 { name="tcR"; version="2.2.1.11"; sha256="1wyxjwyba08m80g2c40sdg3d5brs3qmq8azb6vzwh2wmgqlb5400"; depends=[data_table dplyr ggplot2 gridExtra gtable igraph Rcpp reshape2 scales stringdist]; }; + tbrf = derive2 { name="tbrf"; version="0.1.0"; sha256="011p14jbgswbkb1habk09117a8aywzg8zzdaz0qmyr9icab7dpf1"; depends=[boot dplyr lubridate purrr rlang tibble tidyr]; }; + tcR = derive2 { name="tcR"; version="2.2.2"; sha256="0r44l47pyvj8zc0qa74y048yzjvwf7qrcf635cq656spmf1yszl0"; depends=[data_table dplyr ggplot2 gridExtra gtable igraph Rcpp reshape2 scales stringdist]; }; tcgsaseq = derive2 { name="tcgsaseq"; version="1.6.6"; sha256="0sk8fydhfx1c3mrir3qx8bqcif220l6ggzmlw9yw8faha210ak2y"; depends=[CompQuadForm ggplot2 GSA KernSmooth]; }; tcltk2 = derive2 { name="tcltk2"; version="1.2-11"; sha256="1ibxld379600xx7kiqq3fck083s8psry12859980218rnzikl65d"; depends=[]; }; tclust = derive2 { name="tclust"; version="1.4-1"; sha256="17md6l9v9dl9b72l84df01b52h2xiynbcjm437mv9mzcr09fc2sb"; depends=[]; }; tcpl = derive2 { name="tcpl"; version="1.4.3"; sha256="0b588in2xmdvybzfbbr0ik9mf0ls6k31nbrdpl7ijvxg2xfxfr1w"; depends=[data_table DBI numDeriv RColorBrewer RMySQL RSQLite]; }; tdROC = derive2 { name="tdROC"; version="1.0"; sha256="137j1m9pysjcz1gsfcym0438by3c7na21ccjlqf7xfccr1y8k2k6"; depends=[survival]; }; tdr = derive2 { name="tdr"; version="0.13"; sha256="0i0hnb3fc4d1mbbxcpzmyfh1w2rahfjabg5iyxym3yjd6377al15"; depends=[ggplot2 lattice RColorBrewer]; }; + tdsc = derive2 { name="tdsc"; version="1.0.0.1"; sha256="17nr5fa4f16ww8si8qikbqmixl38jxjy185b80ff2i5v4129mnwd"; depends=[data_table]; }; tdthap = derive2 { name="tdthap"; version="1.1-9"; sha256="0y01x0hcf0rw06cpn4pk17b0shf4v2c9was7vfs0zhsbq8qcwx7r"; depends=[]; }; tea = derive2 { name="tea"; version="1.0"; sha256="03wxhbgx17hl9bbzbfjmfa30q4fqszhs5y9imbp768fmzwbppn24"; depends=[eva]; }; teachingApps = derive2 { name="teachingApps"; version="1.0.4"; sha256="0wi25wdpkz7kh8r1s42wa9kiky8ilmcg8kgw0j1caygwg0bml2fa"; depends=[actuar BH d3heatmap data_table devtools diagram DiagrammeR dplyr DT dygraphs ggplot2 knitr leaflet magrittr markdown metricsgraphics miniUI networkD3 pacman plotly radarchart Rcpp RcppEigen RcppNumerical rprojroot scales shiny shinyAce shinydashboard shinythemes threejs tidyr visNetwork yaml]; }; teamcolors = derive2 { name="teamcolors"; version="0.0.1"; sha256="07mqsbhrsy23qc4j1w1wji36cbh6dijkp6p7g3598nlzhw7ln3aj"; depends=[]; }; teda = derive2 { name="teda"; version="0.1.1"; sha256="0yx469jbkw9cgx73zi5mkykrdn16kn01zh524x9411314aa32avx"; depends=[]; }; teigen = derive2 { name="teigen"; version="2.2.2"; sha256="1k5k3lj6av5pyx130w1j7avd0jdmm12ryc71mi5mq49sp95ndl4v"; depends=[]; }; + telefit = derive2 { name="telefit"; version="1.0.0"; sha256="1g54alrkigbrcf9p7np4cbzdzn3hjch70wvv5d0qxrj1xbbz0rgg"; depends=[abind coda cowplot doRNG dplyr fields foreach ggplot2 gtable itertools mvtnorm raster Rcpp RcppArmadillo RcppEigen reshape2 scales scoringRules SDMTools sp stringr]; }; telegram = derive2 { name="telegram"; version="0.6.0"; sha256="02wwa115f0vz2d9y4nf01397hjkpc3cv2gdl47snrajrm41gji7y"; depends=[curl httr jsonlite R6]; }; telegram_bot = derive2 { name="telegram.bot"; version="1.0.0"; sha256="10i126wa5dbpzxvr8f9zysfwg53051sk9cjdpdrjva1p3yvyn143"; depends=[httr R6 telegram]; }; tempR = derive2 { name="tempR"; version="0.9.9.15"; sha256="00xxrwzbqcsvb50xcrr4aii4fjcfa8bc25jn0zvg4dxmww8w4s1r"; depends=[]; }; tempcyclesdata = derive2 { name="tempcyclesdata"; version="1.0.1"; sha256="0hciachv59kjpjs119r4z24jskzgnassi1yjg3cgl2r0hyglxxc3"; depends=[]; }; tempdisagg = derive2 { name="tempdisagg"; version="0.25.0"; sha256="0zi11jqb3i5kd2z1bbkz8y7g16kmkcn3xpkwj2brv0s86wxwsny7"; depends=[]; }; - temperatureresponse = derive2 { name="temperatureresponse"; version="0.1"; sha256="0q2x09cyy4zacbgmnwd43h1rwv2g3f2rk9cbg2phsvgxqx9vfm24"; depends=[AICcmodavg broom dplyr minpack_lm nlme numDeriv rootSolve tidyr]; }; templates = derive2 { name="templates"; version="0.3.0"; sha256="0xnzj3cvhw1r7zfqaijbfdyclka61jwixcdh05a5z9qwgv0076sh"; depends=[dat magrittr stringr]; }; tensor = derive2 { name="tensor"; version="1.5"; sha256="19mfsgr6vz4lgwidm80i4yw0y1dr3n8i6qz7g4n2xa0k74zc5pp1"; depends=[]; }; - tensorA = derive2 { name="tensorA"; version="0.36"; sha256="1xpczn94a6vfkfibfvr71a7wccksg16pc22h0inpafna4qpygcwp"; depends=[]; }; + tensorA = derive2 { name="tensorA"; version="0.36.1"; sha256="176hjy3bvg3in62r97wxbhq187sjz6c1gwy9x6spaxl6k4my3zy7"; depends=[]; }; + tensorBF = derive2 { name="tensorBF"; version="1.0.2"; sha256="1dw1a6xqcsl4isbzbfiplgqq5nak5n9ffzm23mzzmkh1r1a8kl1y"; depends=[tensor]; }; tensorBSS = derive2 { name="tensorBSS"; version="0.3.4"; sha256="0wh14qy7fa7klb7yy272d16cvgfgnrf25wba3bqbpral9pv5nkmv"; depends=[ICtest JADE Rcpp RcppArmadillo tensor tsBSS]; }; - tensorflow = derive2 { name="tensorflow"; version="1.8"; sha256="1ixli2m7lbkp5pv7a8waxvhi04l41dcrrplzgdyzqi3ifaarr2sk"; depends=[config jsonlite processx reticulate rstudioapi tfruns yaml]; }; + tensorflow = derive2 { name="tensorflow"; version="1.9"; sha256="0g346xzjkq7bsbdchcp6k5lzx7242vamf1zj0clgmpidqz4afhf3"; depends=[config jsonlite processx reticulate rstudioapi tfruns yaml]; }; tensorr = derive2 { name="tensorr"; version="0.1.0"; sha256="00zqklz3hqjv20giwqnd1d62x5hdm620hfdkn1x75i87dv92qn8m"; depends=[assertive_base assertive_properties assertive_types Matrix purrr]; }; - tensr = derive2 { name="tensr"; version="1.0.0"; sha256="05gclhljflkz98hgiq5bgbqjz8icxbdq6b84bn2995cx7v0x85ds"; depends=[]; }; - tergm = derive2 { name="tergm"; version="3.4.1"; sha256="10sanqbnqdyqafjjcwm99zfnpgrv18z4y2rgaq5wqq7nni184hfm"; depends=[coda ergm MASS network networkDynamic nlme robustbase statnet_common]; }; - tesseract = derive2 { name="tesseract"; version="2.1"; sha256="11v4z79sdrms5in5qvg5c6bvf2lynibwzpi7ficf7w240nq23d15"; depends=[curl digest pdftools rappdirs Rcpp tibble]; }; + tensr = derive2 { name="tensr"; version="1.0.1"; sha256="1z6b3ra7fgn88mxbhsq65x3frj5j7p17n119s9kbw7sg9y633vfx"; depends=[assertthat]; }; + tergm = derive2 { name="tergm"; version="3.5.2"; sha256="0p7qcr59p6n7snzspv02m8gn26rgk3rp2hxilmp5jailk43zid35"; depends=[coda ergm MASS network networkDynamic nlme robustbase statnet_common]; }; + tesseract = derive2 { name="tesseract"; version="2.3"; sha256="14v6ac0p6nc76ks1vkrcz74lpmib7hrp5m6gw4vh6pl68cwmd0y6"; depends=[curl digest pdftools rappdirs Rcpp tibble]; }; + testDriveR = derive2 { name="testDriveR"; version="0.4.0"; sha256="1ri5wa0qab3mn921vycxrmzhs0g95dsdj1vxvcr5a999wggwabak"; depends=[]; }; testassay = derive2 { name="testassay"; version="0.1.0"; sha256="06gks3k04m45kn946i525261v33ymwxpvgdy84kc7sp01xxx4rfv"; depends=[]; }; tester = derive2 { name="tester"; version="0.1.7"; sha256="1x5m43abk3x3fvb2yrb1xwa7rb4jxl8wjrnkyd899ii1kh8lbimr"; depends=[]; }; testforDEP = derive2 { name="testforDEP"; version="0.2.0"; sha256="1mgzhj8b35r5cm4bl0nnyxj0h7rwd28d17qvgvaky2kvm2r83cf9"; depends=[Hmisc minerva Rcpp]; }; testit = derive2 { name="testit"; version="0.8"; sha256="1xwpimphcv23ps824s6s77y9w8xww0imm22qmgs61bifjsfc3a88"; depends=[]; }; - testthat = derive2 { name="testthat"; version="2.0.0"; sha256="155l53kb69jga5d8c5nvdwqlvlgfmk4vzyyl4d0108j53jnlgh1v"; depends=[cli crayon digest magrittr praise R6 rlang withr]; }; - testthis = derive2 { name="testthis"; version="1.0.3"; sha256="1q42nhp4nsazn31lxymb3zfj928ygbiv6jy7f0j4m3p02w2hqz5n"; depends=[assertthat devtools magrittr rprojroot stringi testthat usethis]; }; + testthat = derive2 { name="testthat"; version="2.0.1"; sha256="1cafy5xsjx6m08s45456mjsal7mfxzwpbrds0p4z3gwam948gpzy"; depends=[cli crayon digest magrittr praise R6 rlang withr]; }; + testthis = derive2 { name="testthis"; version="1.0.4"; sha256="1gdfpxrgk801ai98mla7hczsa4m85wqsjbc3xk7ngq0dd0knz2j3"; depends=[assertthat devtools magrittr pkgload stringi testthat usethis]; }; tetraclasse = derive2 { name="tetraclasse"; version="0.1.21"; sha256="1cl2cah0xi6x3rvvdy56iszai6rkbxc1w3x13v0l1z1nryff7c6a"; depends=[dplyr FactoMineR ggplot2 ggrepel magrittr reshape2 tibble tidyr]; }; - texPreview = derive2 { name="texPreview"; version="1.1.4"; sha256="1xix13vh3haganyb67rrmrsy2nsk053wq83y9ky99wk5gmxpjmxf"; depends=[base64enc htmltools magick rstudioapi svgPanZoom xml2]; }; - texmex = derive2 { name="texmex"; version="2.4"; sha256="0s3x681f1qnbgmzi5iwqpmkfzpx9gsccd3q1vz1dppzq8fbid3c2"; depends=[ggplot2 mvtnorm]; }; + texPreview = derive2 { name="texPreview"; version="1.2.3"; sha256="0yl8y94jc6b23nmby2ff52yzgx95xma4bzd3w46az7b6pg7a2bxb"; depends=[base64enc htmltools magick rematch2 rstudioapi svgPanZoom whisker xml2]; }; + texmex = derive2 { name="texmex"; version="2.4.2"; sha256="01qx4f5f0gf0xz85lzxxv79fp7syd7x484iw711rbnv0nw3aqwa2"; depends=[ggplot2 mvtnorm Rcpp]; }; texreg = derive2 { name="texreg"; version="1.36.23"; sha256="0yxaqimd7cyfrfpia6fnqm15lgs0bf5zyjzmnfm1v4qmf8kj8x6v"; depends=[]; }; text2vec = derive2 { name="text2vec"; version="0.5.1"; sha256="0vcp50mgpgxbf534vd8l56m8006i3sh8a4v9nrf9vxkq2pv7xygc"; depends=[data_table digest foreach futile_logger irlba Matrix mlapi R6 Rcpp RcppParallel sparsepp stringi]; }; - textTinyR = derive2 { name="textTinyR"; version="1.1.1"; sha256="0i35mfvrqz524089zysd1dyhfk6ndr1azxps01vls9rvgyw9452i"; depends=[BH data_table Matrix R6 Rcpp RcppArmadillo]; }; + textTinyR = derive2 { name="textTinyR"; version="1.1.2"; sha256="177m3mh61isjk9svbnv5gdlpyfy7fdmafi2znxh2m7fqcwn7k3af"; depends=[BH data_table Matrix R6 Rcpp RcppArmadillo]; }; textcat = derive2 { name="textcat"; version="1.0-5"; sha256="039bzyz4jvh1hl2a2pfp328kr2mpb1a07j79yqf5cbqk3d5a197b"; depends=[slam tau]; }; - textclean = derive2 { name="textclean"; version="0.9.2"; sha256="1xf5krbc8nr0yk63mcdlzbn3r58m4l4wgxhp54bahvn0ff8cwsjb"; depends=[data_table english glue lexicon mgsub qdapRegex stringi textshape]; }; + textclean = derive2 { name="textclean"; version="0.9.3"; sha256="0kgjh6c4f14qkjc4fds7q7rpf4nkma3p0igm54fplmm3p853nvrz"; depends=[data_table english glue lexicon mgsub qdapRegex stringi textshape]; }; texteffect = derive2 { name="texteffect"; version="0.1"; sha256="0fwcbz7bpynvcivac16z77j8d398bf7vl4l8sppi9yvg72l0k94w"; depends=[boot ggplot2 MASS]; }; textfeatures = derive2 { name="textfeatures"; version="0.1.1"; sha256="0pcs3nax21npb5blbwrmzl7q85ya8n7vgjn83z2abjr80gj3f5lj"; depends=[dplyr rlang tibble]; }; textgRid = derive2 { name="textgRid"; version="1.0.1"; sha256="1wi5vq5f7ixhz39l5hqi2jlmjjacx4lyrs4h8xfbd47pj6g16lc6"; depends=[]; }; textile = derive2 { name="textile"; version="0.1.2"; sha256="067zli6sl7bp9843spgx47hmw55aq61yinqw1lqifmrpk7b0ywk5"; depends=[]; }; textir = derive2 { name="textir"; version="2.0-5"; sha256="0ban5qiinlxizqpcgafv4b5gwxlil6jdfarjd6l1m48awxh3mlnb"; depends=[distrom gamlr Matrix]; }; - textmineR = derive2 { name="textmineR"; version="2.1.2"; sha256="1lhk4ix8h138vrn2l1ivcwgv2d9i7xgccn7c6h6gxxc5dpzwdsyk"; depends=[lda Matrix Rcpp RcppArmadillo RcppProgress RSpectra SnowballC stringr text2vec tm topicmodels]; }; + textmineR = derive2 { name="textmineR"; version="2.1.3"; sha256="120zhg63q09m1fs08kivw15scvy2dc66xc9f1vrd4vgx8wlgn70b"; depends=[lda Matrix Rcpp RcppArmadillo RcppProgress RSpectra SnowballC stringr text2vec tm]; }; textmining = derive2 { name="textmining"; version="0.0.1"; sha256="16wiykhrjs4djwa7q2wm4g8b3mrhh6hq9d9876w1j7c2s6zx69gd"; depends=[caret dplyr koRpus mallet networkD3 NLP rJava slam SnowballC stylo tm topicmodels wordcloud]; }; textometry = derive2 { name="textometry"; version="0.1.4"; sha256="17k3v9r5d5yqgp25bz69pj6sw2j55dxdchq63wljxqkhcwxyy9lh"; depends=[]; }; textrank = derive2 { name="textrank"; version="0.2.0"; sha256="0s2mnid3dha3nyyc9abhb36vlij4bg0024i9ay4pvvy4l1x947gr"; depends=[data_table digest igraph]; }; - textreadr = derive2 { name="textreadr"; version="0.7.0"; sha256="081lqqclx2dlrv341178dagd5zajndf27lbrkrv78668cdfk58xr"; depends=[antiword curl data_table pdftools readxl rvest striprtf textshape xml2]; }; - textreg = derive2 { name="textreg"; version="0.1.4"; sha256="0k7hpvvhacz29d3mvnygg6rqmh9f3ghkcp7kjmvv9jnr2ipw2j21"; depends=[NLP Rcpp tm]; }; + textreadr = derive2 { name="textreadr"; version="0.9.0"; sha256="04nyjrfxgwq8g3bdj12nnkia2xn2zngk1rprlkpyicrisgq36agk"; depends=[antiword curl data_table pdftools readxl rvest striprtf textshape xml2]; }; + textreg = derive2 { name="textreg"; version="0.1.5"; sha256="0h44z5hyndnvzd9axix7gpmhbdx347dfgxw9r8w38kyw6dklbjy6"; depends=[NLP Rcpp tm]; }; textreuse = derive2 { name="textreuse"; version="0.1.4"; sha256="0qfp7ffzb5p3k3wiw8i1zjskni8f38rzkjnss97j9f3vhhb8j4r7"; depends=[assertthat BH digest dplyr NLP Rcpp RcppProgress stringr tidyr]; }; textshape = derive2 { name="textshape"; version="1.6.0"; sha256="1pl85wjq5rl25gdlh4cp0l14hn76rrmpl7l1fn7kq9lwj9yfpcs8"; depends=[data_table slam stringi]; }; textstem = derive2 { name="textstem"; version="0.1.4"; sha256="1pbhi5ia3w16vsix2x3if51zd2v9bcv0j4lj9hfikgq1yz9zxmw2"; depends=[dplyr hunspell koRpus koRpus_lang_en lexicon quanteda SnowballC stringi textclean textshape]; }; - textutils = derive2 { name="textutils"; version="0.1-6"; sha256="0xvsd6pfg4kv40l14xcvmirqiq8rmky4s8v8diagzri3a7i45nqn"; depends=[]; }; - tfdatasets = derive2 { name="tfdatasets"; version="1.5"; sha256="1ik6rzfnjmm54m7s2rvp1bq5jk0k2vl631bz3db3dk639jndiz6a"; depends=[magrittr reticulate rlang tensorflow tidyselect]; }; + textutils = derive2 { name="textutils"; version="0.1-9"; sha256="13fy5krm8giprw0jjdws8p4c5fra6r4vhbyzpf5aksacy125j66y"; depends=[]; }; + tfdatasets = derive2 { name="tfdatasets"; version="1.9"; sha256="1djq3ywkzbnmmfr3fbdi6pg4sapqjh53dm2p5bil8f41maak12b7"; depends=[magrittr reticulate rlang tensorflow tidyselect]; }; tfer = derive2 { name="tfer"; version="1.1"; sha256="19d31hkxs6dc4hvj5495a3kmydm29mhp9b2wp65mmig5c82cl9ck"; depends=[]; }; - tfestimators = derive2 { name="tfestimators"; version="1.5"; sha256="069j6d5i19yc3nhxrrzwzassv4fv3bdhygxvqqc49nndyf5vwwbj"; depends=[magrittr progress purrr reticulate rlang tensorflow tfruns tibble tidyr tidyselect]; }; + tfestimators = derive2 { name="tfestimators"; version="1.9.0"; sha256="0yfnwiszxypzinzl2qzbl317lm1xfshg4228c7h6z8im5da59x9p"; depends=[magrittr progress purrr reticulate rlang tensorflow tfruns tibble tidyr tidyselect]; }; tfplot = derive2 { name="tfplot"; version="2015.12-1"; sha256="1x007j6ibbzfr0kncvsr4c7295jv3c4amg2dpyjvdir9h665nc23"; depends=[tframe]; }; tframe = derive2 { name="tframe"; version="2015.12-1"; sha256="0k0favda3z6zdg7ykc2nnl28gxz7sfzbyr5pcifiyi984pa2zgfx"; depends=[]; }; tframePlus = derive2 { name="tframePlus"; version="2016.7-1"; sha256="12xi2xw4pr78n3cppfknpxmjp2263pb4kqj9v412yxwp82rgb6yk"; depends=[tframe timeSeries]; }; - tfruns = derive2 { name="tfruns"; version="1.3"; sha256="02ib3k3jsmskk5cdxl2nyvnvpn7nlkgjb353z7qlwal0fgrssaln"; depends=[base64enc config jsonlite magrittr reticulate rlang rstudioapi tidyselect whisker yaml]; }; + tfruns = derive2 { name="tfruns"; version="1.4"; sha256="1mqv5m13qm1dqz0622jd5ayb3nk76lfa657y2hyqv261flxizhvg"; depends=[base64enc config jsonlite magrittr reticulate rlang rstudioapi tidyselect whisker yaml]; }; + tfse = derive2 { name="tfse"; version="0.4.2"; sha256="06d2v69xcikzilbc1hkl1hw54r3sjng7mgiswyg0san50swgs7l2"; depends=[]; }; tgcd = derive2 { name="tgcd"; version="2.0"; sha256="1553f464jpmngdj8fmbjn9cpmrcp4ysgsfx4w7q4pm4csslsqvlr"; depends=[]; }; tggd = derive2 { name="tggd"; version="0.1.1"; sha256="1izar1b3w148vp2r8gv3vpwfndib8ilxcjxgbfzbxn7q5mr73mwa"; depends=[gsl]; }; tgp = derive2 { name="tgp"; version="2.4-14"; sha256="1l3kssjkh5sbrh75qdpmynjfnidgz8vmzq1jml1qm1yfwval8ak1"; depends=[maptree]; }; @@ -12018,34 +12546,40 @@ in with self; { thgenetics = derive2 { name="thgenetics"; version="0.4-2"; sha256="1314gry3xs9v4jy13g08q16qy4ax3s0bc7d74gi0wbpkgdrk3lql"; depends=[]; }; thief = derive2 { name="thief"; version="0.3"; sha256="12ymkkisg5p0g1gmvlczhp4dc7mirjg55fqqmz2d90673vlg6rfq"; depends=[forecast ggplot2 hts]; }; thinkr = derive2 { name="thinkr"; version="0.13"; sha256="1j43mjznriq8d5ki50rb41vgmzj2gq8sahvhj11742ggxd0bzvdb"; depends=[assertthat devtools dplyr ggplot2 lazyeval lubridate magrittr officer rvg stringi stringr tidyr]; }; + thor = derive2 { name="thor"; version="1.0.1"; sha256="02yyn8sp2s8qhxhwhc4f4921014c5q70b5x2r00jbqlwg069szj2"; depends=[R6 storr]; }; threeboost = derive2 { name="threeboost"; version="1.1"; sha256="033vwn42ys81w6z90w5ii41xfihjilk61vdnsgap269l9l0c8gmn"; depends=[Matrix]; }; threejs = derive2 { name="threejs"; version="0.3.1"; sha256="1s3rdlzy7man6177ycayg6xsh6k8y1r9rdj9yzn3b93j2rs0nxbi"; depends=[base64enc crosstalk htmlwidgets igraph]; }; threewords = derive2 { name="threewords"; version="0.1.0"; sha256="083y5i4qyl1wj017wy5ywl2yx9wvrpjl9g9k9clvnrbwzbycx2cg"; depends=[httr]; }; threg = derive2 { name="threg"; version="1.0.3"; sha256="1ja0w4hhdkw3b1cipbpw8ym27k5lh2m7gibd74mj6gij7rpixrnb"; depends=[Formula survival]; }; thregI = derive2 { name="thregI"; version="1.0.4"; sha256="0zddd32fnfi98zwq08akkvhkg3c66sj3jii6ap8p1m9a0wg2k2k3"; depends=[Formula survival]; }; threshr = derive2 { name="threshr"; version="1.0.0"; sha256="1zrhmqpz3k2gyddrzg96yyyc1jffj3aic2dmbidxxc97b9g5hi53"; depends=[revdbayes rust]; }; + thriftr = derive2 { name="thriftr"; version="1.0.3"; sha256="08d9xi0czy8ci0aci75prjvfhpkmdw23qvcviap9kz2hr9x23183"; depends=[R6 rly stringi]; }; thsls = derive2 { name="thsls"; version="0.1"; sha256="18z7apskydkg7iqrs2hgnzby578qsvyd73wx8v4z3aa338lssdi7"; depends=[Formula]; }; tibble = derive2 { name="tibble"; version="1.4.2"; sha256="05svbjkm1xqv56ybjgsqqg2pp8nn6hams1yxcr8aanbhzx9h6rqi"; depends=[cli crayon pillar rlang]; }; tibbletime = derive2 { name="tibbletime"; version="0.1.1"; sha256="15rp66p4pgiv7fd0rx1pzqlpsg4i4j5j368cwqm1mf1m4xknz6yy"; depends=[assertthat dplyr glue hms lubridate purrr Rcpp rlang tibble zoo]; }; tibbrConnector = derive2 { name="tibbrConnector"; version="1.5.1"; sha256="1r58myi7x4hqqvyrphxy4ppa1lnad6x2ginfq2j52ax53zr07ajp"; depends=[RCurl rjson]; }; tictactoe = derive2 { name="tictactoe"; version="0.2.2"; sha256="1fx8plj5zr04xwk5hfj3zqhcknidxlzya2q14cf0m3y33a86lx42"; depends=[hash]; }; tictoc = derive2 { name="tictoc"; version="1.0"; sha256="1zp2n8k2ax2jjw89dsri268asmm5ry3ijf32wbca5ji231y0knj7"; depends=[]; }; - tidyLPA = derive2 { name="tidyLPA"; version="0.1.3"; sha256="1yk9abn21ycfdr1h43shjaymga5j9z862mp1zbwj2wbxxv6m5pp7"; depends=[dplyr forcats ggplot2 magrittr mclust purrr readr rlang stringr tibble tidyr]; }; - tidyRSS = derive2 { name="tidyRSS"; version="1.2.4"; sha256="0dvpaawwm6jbwxiilxllzmifjwx9spbl57jmi8lkcq948abn84vg"; depends=[dplyr httr jsonlite lubridate magrittr purrr sf stringr testthat tibble xml2]; }; + tidyLPA = derive2 { name="tidyLPA"; version="0.2.2"; sha256="0z9yh4wa9mzly5g3jkqap70zh7l3s2xzgjjrhzyvshd82g1bs7ac"; depends=[dplyr forcats ggplot2 magrittr mclust purrr readr rlang stringr tibble tidyr]; }; + tidyRSS = derive2 { name="tidyRSS"; version="1.2.6"; sha256="1kwc0bnpz4gi05j2yz6c4r30jhd1dvcqcpajaxlmnwnblpcp033f"; depends=[dplyr httr jsonlite lubridate magrittr purrr sf stringr testthat tibble xml2]; }; + tidybayes = derive2 { name="tidybayes"; version="1.0.3"; sha256="1dkkzfbbq94vrrswf3g6dcds4vpvjn2kldf91f7642qf6kdgy135"; depends=[arrayhelpers coda dplyr forcats ggplot2 ggridges ggstance HDInterval LaplacesDemon magrittr MASS plyr purrr rlang stringi stringr tibble tidyr tidyselect]; }; tidyboot = derive2 { name="tidyboot"; version="0.1.1"; sha256="0nss1ci763g9p5f33g163ppamx72axc8xhrils0cql3ka8439pmn"; depends=[dplyr modelr purrr rlang tidyr]; }; - tidycensus = derive2 { name="tidycensus"; version="0.4.6"; sha256="1czfdwm5bn0xpqm43mvb5bd30m5kdxikaq21gxkj41r78z69qncl"; depends=[dplyr httr jsonlite purrr rappdirs readr rvest sf stringr tidyr tigris units xml2]; }; + tidycensus = derive2 { name="tidycensus"; version="0.8.1"; sha256="1xw3r53wy3sy8rc08nprs4xfxplq6h1gmy1lhcwi8db922nyb671"; depends=[dplyr httr jsonlite purrr rappdirs readr rvest sf stringr tidyr tigris units xml2]; }; tidygenomics = derive2 { name="tidygenomics"; version="0.1.0"; sha256="0n6km2zhdmbgacn6rzamrn506d9y3sl6yp2q6fd9x7kzgz09aq4n"; depends=[dplyr fuzzyjoin IRanges purrr Rcpp tidyr]; }; tidygraph = derive2 { name="tidygraph"; version="1.1.0"; sha256="1cqmii1pia5s8cj1hfm5jh4qgg9dn65dcb666bqfhq51nzgwy6b4"; depends=[dplyr igraph magrittr R6 Rcpp rlang tibble tidyr]; }; - tidyhydat = derive2 { name="tidyhydat"; version="0.3.4"; sha256="03kjcvh6g6xwd72fm8yyflyy72zm6fd8d0rlb6wabzq7hbzhfpp0"; depends=[cli crayon DBI dbplyr dplyr httr lubridate rappdirs readr rlang RSQLite tidyr]; }; + tidyhydat = derive2 { name="tidyhydat"; version="0.3.5"; sha256="1b82pxkn54kil661hkc5dp52nkl4sdbc0qr835ax1j00ix4hzi0b"; depends=[cli crayon DBI dbplyr dplyr httr lubridate rappdirs readr rlang RSQLite tidyr]; }; tidyimpute = derive2 { name="tidyimpute"; version="0.1.0"; sha256="03b475nn206hxq3i0n7j1qws82rwwk5vqivmdg5mff44dvz4gl5s"; depends=[dplyr na_tools rlang]; }; + tidymodels = derive2 { name="tidymodels"; version="0.0.1"; sha256="1ijl9hkdnqiszzgnm7bk8mq34anm6xqwa1hv3q9kh3iwph9mi10c"; depends=[broom cli crayon dplyr ggplot2 infer magrittr pillar purrr recipes rlang rsample rstudioapi tibble tidyposterior tidypredict tidytext yardstick]; }; tidyposterior = derive2 { name="tidyposterior"; version="0.0.1"; sha256="09q2j6kjwqphdzi60w26mlax9fnmndw7s3fsxfcj0pjjl8688w52"; depends=[broom dplyr ggplot2 purrr rlang rsample rstanarm tibble tidyr]; }; tidypredict = derive2 { name="tidypredict"; version="0.2.0"; sha256="1hq9xzaa234679qvf02nc5w8l21yh1f3dhl76zxzqc7na7chn13k"; depends=[dplyr purrr rlang tibble tidyr]; }; tidyquant = derive2 { name="tidyquant"; version="0.5.5"; sha256="0kh3y291j5d6qbqr45jjzjpwa02r0ymb7gdr0zd9g3d4czllwv95"; depends=[dplyr ggplot2 httr lazyeval lubridate magrittr PerformanceAnalytics purrr Quandl quantmod rlang stringr tibble tidyr tidyverse timetk TTR xml2 xts]; }; - tidyr = derive2 { name="tidyr"; version="0.8.1"; sha256="0485f19mkkglc4bv57y6bm6l9rfgd878hsz2xdg1nwgbqchjhgix"; depends=[dplyr glue magrittr purrr Rcpp rlang stringi tibble tidyselect]; }; - tidyselect = derive2 { name="tidyselect"; version="0.2.4"; sha256="1592dbzawhd1hpsp9919l4sifyiaaj6xr7lnhsbwa6jwmmb0xcsw"; depends=[glue purrr Rcpp rlang]; }; + tidyr = derive2 { name="tidyr"; version="0.8.2"; sha256="03s9dv6c2dj65a769h8fgy9878y46rdq7x65i53kd44kag80i9cr"; depends=[dplyr glue magrittr purrr Rcpp rlang stringi tibble tidyselect]; }; + tidyselect = derive2 { name="tidyselect"; version="0.2.5"; sha256="0x3cp36byhfjajikr1lwffjm85ayw3bcs7d7kb0cydgs61ifiqjw"; depends=[glue purrr Rcpp rlang]; }; tidystats = derive2 { name="tidystats"; version="0.2"; sha256="15f12zizgql1y303pr4vhmvpmpxib0wpybd0b5gbx281iglpdsc0"; depends=[dplyr knitr magrittr purrr readr stringr tibble tidyr]; }; tidystringdist = derive2 { name="tidystringdist"; version="0.1.2"; sha256="1jk5yqkjf33arbbfgfzk7ym943gy95n3yncybmvwbjsff07qpmaw"; depends=[attempt dplyr magrittr purrr rlang stringdist]; }; - tidytext = derive2 { name="tidytext"; version="0.1.9"; sha256="1hkxg23cc44496w8nvrm1zsbk05fhk423k12ss6ay2da3n8khi0f"; depends=[broom dplyr hunspell janeaustenr Matrix purrr rlang stopwords stringr tokenizers]; }; + tidytext = derive2 { name="tidytext"; version="0.2.0"; sha256="15xyn7mz81cm6dqsjvdb681q2sag9pp62kv11y0blyxd81wpy994"; depends=[broom dplyr hunspell janeaustenr Matrix purrr rlang stopwords stringr tokenizers]; }; + tidytidbits = derive2 { name="tidytidbits"; version="0.1.0"; sha256="154k3gn87fnmzhldyp7h0rq5gxpndwaf4gahqydhsh9i6dq61lk7"; depends=[dplyr extrafont forcats magrittr purrr rlang stringr tibble tidyr tidyselect]; }; + tidytransit = derive2 { name="tidytransit"; version="0.3.5"; sha256="0pxkn162i601lc8lwci1j4ns44yxc1d7zy7c7423ccqjpj85nm7g"; depends=[assertthat dplyr here htmltools httr lubridate magrittr readr rlang scales sf stringr tibble tidyr zip]; }; tidytree = derive2 { name="tidytree"; version="0.1.9"; sha256="0bxgmwamiclr4fnn5dk7hnkl7jf4p1fgwga2gfa3a6lwa79qgpwn"; depends=[ape dplyr lazyeval magrittr tibble]; }; tidyverse = derive2 { name="tidyverse"; version="1.2.1"; sha256="0yy3fkjksgcn6wkbgsb0pbnmsyqs4m01mziqafhig578nixs4rxd"; depends=[broom cli crayon dbplyr dplyr forcats ggplot2 haven hms httr jsonlite lubridate magrittr modelr purrr readr readxl reprex rlang rstudioapi rvest stringr tibble tidyr xml2]; }; tidyxl = derive2 { name="tidyxl"; version="1.0.3"; sha256="02icd5xwyimdlzrn6ikj6rrs3kj3qw1ngap69cf89mvmlkp93y79"; depends=[piton Rcpp]; }; @@ -12053,7 +12587,7 @@ in with self; { tiger = derive2 { name="tiger"; version="0.2.3.1"; sha256="0xr56c46b956yiwkili6vp8rhk885pcmfyd3j0rr4h8sz085md6n"; depends=[e1071 hexbin klaR lattice qualV som]; }; tigerhitteR = derive2 { name="tigerhitteR"; version="1.1.0"; sha256="0inyi12lf8bn7nbklf2rjixk6wrgrjcp8njv7knai4dgvv7v0rfa"; depends=[Hmisc magrittr openxlsx zoo]; }; tigerstats = derive2 { name="tigerstats"; version="0.3"; sha256="12wrghipgypkhwwkmaxb6n0qx9fgxk82dc6wlh56rblsvciv2hj0"; depends=[abd ggplot2 lattice manipulate MASS mosaic mosaicData]; }; - tigger = derive2 { name="tigger"; version="0.2.11"; sha256="1kbqlfr3lsiiv0l7dzahna706zb4mx0gfx91220n2ckfc81pyrv5"; depends=[alakazam doParallel dplyr foreach ggplot2 iterators lazyeval tidyr]; }; + tigger = derive2 { name="tigger"; version="0.3.1"; sha256="1ay8al764adpzabwsinxg97y2mz28k6y1m8ckfxhi9h11az23hid"; depends=[alakazam doParallel dplyr foreach ggplot2 gridExtra gtools iterators lazyeval rlang shazam stringi tidyr]; }; tightClust = derive2 { name="tightClust"; version="1.1"; sha256="0vqkp2g6z8y3b6dhzglmacjhf2qi1sg80kb941mwfafin2k40zbm"; depends=[]; }; tigreBrowserWriter = derive2 { name="tigreBrowserWriter"; version="0.1.5"; sha256="0izgx1khci6qc6pz85dxj75kzxvpr30l0vhcv9476jrcbwqs4k8m"; depends=[DBI RSQLite]; }; tigris = derive2 { name="tigris"; version="0.7"; sha256="0azfp8ahf63a10862669wsamf0270rcyrmknc331vjs52b3qlrvl"; depends=[dplyr httr magrittr maptools rappdirs rgdal sf sp stringr uuid]; }; @@ -12074,8 +12608,8 @@ in with self; { timeordered = derive2 { name="timeordered"; version="0.9.9"; sha256="0rfga5i6kckmlz2dzqb1pp634dl93wxp7v3kisxlbjl7mgnbck3k"; depends=[igraph plyr]; }; timereg = derive2 { name="timereg"; version="1.9.2"; sha256="0ddckk8vrfkk4kwlrjms6niry6g6c8dz0yf96z2kq03jgs06kfdh"; depends=[lava numDeriv survival]; }; timesboot = derive2 { name="timesboot"; version="1.0"; sha256="1ixmcigi1bf42np93md8d3w464papg9hp85v0c3hg3vl4nsm2bji"; depends=[boot]; }; - timeseriesdb = derive2 { name="timeseriesdb"; version="0.2.1"; sha256="0150zs8c8184jzry33aki21prmpnxp3rclp84q6igwxi4grdhlr0"; depends=[DBI reshape2 RJSONIO RPostgreSQL shiny xts zoo]; }; - timetk = derive2 { name="timetk"; version="0.1.1"; sha256="0m8l9ivww5aykdfab6bk9khy7jqkd3yrzbz2r78xnsfzipa9bzmk"; depends=[devtools dplyr forecast lazyeval lubridate padr purrr readr stringi tibble tidyr xts zoo]; }; + timeseriesdb = derive2 { name="timeseriesdb"; version="0.4.1"; sha256="1ghb3lg63fs9zx34l5qczv39mdccnmqzlc74l1zhb8qmsg8sm1g2"; depends=[data_table DBI jsonlite openxlsx RPostgreSQL shiny xtable xts zoo]; }; + timetk = derive2 { name="timetk"; version="0.1.1.1"; sha256="0ca6xnsidc98yjb52gbafvfgxzdgszj8l9hvc77mwgc33g0ydvs1"; depends=[devtools dplyr forecast lazyeval lubridate padr purrr readr stringi tibble tidyr xts zoo]; }; timetools = derive2 { name="timetools"; version="1.14"; sha256="13jchgd9fc8hxj74wm1kg4rwcng4yxblkq04i33djsqghgb5f9mj"; depends=[]; }; timetree = derive2 { name="timetree"; version="1.0"; sha256="1fpdp6mkwm67svqvkfflvqxn52y2041zl09rxrms28ybbd5f84c0"; depends=[phangorn XML]; }; timevis = derive2 { name="timevis"; version="0.4"; sha256="08caa5gilh1c0z41lm3ghf6cpnlsdjfm1v7ha73jxv1655kznmpx"; depends=[htmltools htmlwidgets jsonlite magrittr rmarkdown shiny]; }; @@ -12084,46 +12618,48 @@ in with self; { tinsel = derive2 { name="tinsel"; version="0.0.1"; sha256="0n1x0cf4x6cq1yks0444nxd9snga4m6inc5lfvb7k96fzjb3xgbp"; depends=[]; }; tint = derive2 { name="tint"; version="0.1.0"; sha256="1hczc2nrm8xgvw3igkfnlqyz73686l447kigsrd6m796v8ny1gbf"; depends=[htmltools knitr rmarkdown]; }; tinyProject = derive2 { name="tinyProject"; version="0.5"; sha256="10sllhjcla4pfgp5n1y5vi318q9bcy82j88rx3k1sgzmbq1nc1c2"; depends=[brew devtools]; }; - tinytex = derive2 { name="tinytex"; version="0.5"; sha256="1pg4jfyvandjwz3lmr38pbqi9d045iwkk3xklhsfhhxq6aviq9p7"; depends=[]; }; - tiobeindexr = derive2 { name="tiobeindexr"; version="0.1.0"; sha256="045b0c0mn3qlasclpzc2k3x1xlmcdvg2ixc2n9m6gjmhp2fdm499"; depends=[rvest xml2]; }; + tinytex = derive2 { name="tinytex"; version="0.9"; sha256="08w5hyq3ysh631d5whgcfv1bb007cdc0bjhb83vwmhazs6rgvyjy"; depends=[xfun]; }; + tiobeindexr = derive2 { name="tiobeindexr"; version="0.1.1"; sha256="09vw83hkf7lgd3xyhbmqkyv57g3dz856230xkf8630jiicfvcg3b"; depends=[rvest xml2]; }; tipom = derive2 { name="tipom"; version="1.0.2-1"; sha256="1gdfv0g5dw742j6ycmi0baqh6xcchp3yf2n1g8vn7jmqgz5mlhdr"; depends=[]; }; tippy = derive2 { name="tippy"; version="0.0.1"; sha256="0kkyi4s4ffpyjyfl89cd5y788ab1p253rx179k422y3y1z6w1md7"; depends=[htmltools htmlwidgets jsonlite shiny]; }; tipr = derive2 { name="tipr"; version="0.1.1"; sha256="138xmkfad0xjrmr9v3ladbwsyknyad27wxcav03n6f72plhxmxb6"; depends=[broom purrr tibble]; }; tis = derive2 { name="tis"; version="1.34"; sha256="01bpl8q2n49wpr2gghkcv1zf16b3375xa71mv0q7wwn0da3n7m0n"; depends=[]; }; titan = derive2 { name="titan"; version="1.0-16"; sha256="0x30a877vj99z3fh3cw9762j5ci56964j2466xfbwcywhn9njz5r"; depends=[boot lattice MASS]; }; titanic = derive2 { name="titanic"; version="0.1.0"; sha256="0mdmh0ciwfig00847bmvp50cyvj8pra6q4i4vdg7md19z5rjlx3j"; depends=[]; }; + titeIR = derive2 { name="titeIR"; version="0.1.0"; sha256="047vidn3zydbjijwgz6qm2d9j2ny8ng2sv5jzm8zb300y7k2426c"; depends=[Iso]; }; titrationCurves = derive2 { name="titrationCurves"; version="0.1.0"; sha256="0z127sihd262mdik46sq9vcf05s7jsqmkpm3p4d779viw74bl768"; depends=[]; }; tkRplotR = derive2 { name="tkRplotR"; version="0.1.1"; sha256="0fr30c2xjgpjh0pkqv0m7g413wkzzffbak7ak26k7bsi2ls341qa"; depends=[]; }; tkrgl = derive2 { name="tkrgl"; version="0.8"; sha256="1c5jiahqpf3nfybkzmks785dlkchjdisvknxkb0biv3xj9nzgz14"; depends=[rgl]; }; - tkrplot = derive2 { name="tkrplot"; version="0.0-23"; sha256="1cnyszn3rmr1kwvi5a178dr3074skdijfixf5ln8av5wwcy35947"; depends=[]; }; + tkrplot = derive2 { name="tkrplot"; version="0.0-24"; sha256="04gk48vm8ilj1n3b3ir66pcfv504ra4rlgc0ll4ixbnp6w566wr8"; depends=[]; }; tlemix = derive2 { name="tlemix"; version="0.1.3"; sha256="0c4mvdxlhbmyxj070xyipx4c27hwxlb3c5ps65ipm6gi8v8r6spj"; depends=[]; }; tlm = derive2 { name="tlm"; version="0.1.5"; sha256="1iw08pa70nb25fnv64834s5c8vl456a2rcng7x6v9vs5q37610g6"; depends=[boot]; }; tlmec = derive2 { name="tlmec"; version="0.0-2"; sha256="1gak8vxmfjf05bhaj6lych7bm8hgav1x3h14k2ra7236v82rqbw7"; depends=[mvtnorm]; }; - tm = derive2 { name="tm"; version="0.7-4"; sha256="1vvc0arl1w5g8r8bp5w95w79d7hnyfvkhsw5nq2qxql1sjsq69ya"; depends=[BH NLP Rcpp slam xml2]; }; + tls = derive2 { name="tls"; version="0.1.0"; sha256="183b5m70s2whlgp9s1gb4xnylhlp4hnh3lw6b8f2vx4kahaid763"; depends=[]; }; + tm = derive2 { name="tm"; version="0.7-5"; sha256="05x3kj6dxffcfyn42q2fw9bby5f4wdmslc3ww1dl0r09pz950cax"; depends=[BH NLP Rcpp slam xml2]; }; tm_plugin_alceste = derive2 { name="tm.plugin.alceste"; version="1.1"; sha256="0wid51bbbx01mjfhnaiv50vfyxxmjxw8alb73c1hq9wlsh3x3vjf"; depends=[NLP tm]; }; tm_plugin_dc = derive2 { name="tm.plugin.dc"; version="0.2-8"; sha256="0z843i2wlmx75748p95jz3j45d9bzmlmqa3awgya24k7bdhpd6kd"; depends=[DSL NLP slam tm]; }; tm_plugin_europresse = derive2 { name="tm.plugin.europresse"; version="1.4"; sha256="03qi9rkfwgjvir4cjpi9imc8zaldvan42v9lqfr5d6zhr0ajy6wx"; depends=[NLP tm XML]; }; tm_plugin_factiva = derive2 { name="tm.plugin.factiva"; version="1.7"; sha256="1zcddarjd083p3sly49wvsnbn6bmpx5wd1bqm3acgydxk8y84nif"; depends=[NLP rvest tm xml2]; }; tm_plugin_lexisnexis = derive2 { name="tm.plugin.lexisnexis"; version="1.4.0"; sha256="0q4njhfpwqym9d8xfbb577vn6g9ks4nkpb4bh6j31nzg7yp96av7"; depends=[ISOcodes NLP tm xml2]; }; - tm_plugin_mail = derive2 { name="tm.plugin.mail"; version="0.1"; sha256="0ca2w2p5zv3qr4zi0cj3lfz36g6xkgkbck8pdxq5k65kqi5ndzyp"; depends=[NLP tm]; }; + tm_plugin_mail = derive2 { name="tm.plugin.mail"; version="0.2-1"; sha256="0rn8jqv622qmc0zkz534ka5qnbca2rlabxm3vjbqplr6fh1ahwb1"; depends=[NLP tm]; }; tm_plugin_webmining = derive2 { name="tm.plugin.webmining"; version="1.3"; sha256="1694jidf01ilyk286q43bjchh1gg2fk33a2cwsf5jxv7jky3gl7h"; depends=[boilerpipeR NLP RCurl RJSONIO tm XML]; }; - tmap = derive2 { name="tmap"; version="1.11-2"; sha256="1cinbsfhi8pngidxp3brmba1willknavlrpjzywm85wp7973y045"; depends=[classInt htmltools htmlwidgets leaflet mapview raster RColorBrewer rgdal rgeos sp spdep tmaptools]; }; - tmaptools = derive2 { name="tmaptools"; version="1.2-4"; sha256="1dymngn3hrpky5v767lghijlbagmz57dqrkw57r0gy8a9k06bsx8"; depends=[classInt dichromat geosphere KernSmooth magrittr osmar raster RColorBrewer rgdal rgeos rmapshaper sp spdep XML]; }; + tm1r = derive2 { name="tm1r"; version="1.1.0"; sha256="0vzl1w5x1gpbfkxkqhf6lafvnqzh7z4ahhd38g9a7miw27c60a5a"; depends=[httr jsonlite]; }; + tmap = derive2 { name="tmap"; version="2.1-1"; sha256="0928f7cqwqy66hp959mpaq7idb3riz6ahhfh26aidpaqc85lwqpw"; depends=[classInt htmltools htmlwidgets leaflet mapview raster RColorBrewer sf tmaptools units viridisLite]; }; + tmaptools = derive2 { name="tmaptools"; version="2.0-1"; sha256="0zfj2q3p4xmb7xzpiidfn20g569fscyhryzcpmvwkp98a7fg9swz"; depends=[classInt dichromat KernSmooth lwgeom magrittr raster RColorBrewer rgdal rgeos sf sp units viridisLite XML]; }; tmbstan = derive2 { name="tmbstan"; version="1.0.0"; sha256="01x1nw0mlbpsldrd6hx2g040d9slrhk7hm2pm1v7pci3vxgbpgy9"; depends=[BH Rcpp RcppEigen rstan StanHeaders TMB]; }; tmcn = derive2 { name="tmcn"; version="0.2-12"; sha256="1gqmq3f0plgd44056905l5jd7x9k4ls06hcp006w8skxj1rnwzb9"; depends=[]; }; tmg = derive2 { name="tmg"; version="0.3"; sha256="0yqavibinzsdh85izzsx8b3bb9l36vzkp5a3bdwdbh410s62j68a"; depends=[Rcpp RcppEigen]; }; tmle = derive2 { name="tmle"; version="1.3.0-1"; sha256="1y7fjj2492a70idnqwrlcdpz2bqphdxbaz96yjxnkfhx940y26b5"; depends=[SuperLearner]; }; tmle_npvi = derive2 { name="tmle.npvi"; version="0.10.0"; sha256="00jav1ql3lv18wh9msxnjvz36z2ds44fdi6lrp1pfphh1in4vdcl"; depends=[geometry MASS Matrix R_methodsS3 R_oo R_utils]; }; - tmlenet = derive2 { name="tmlenet"; version="0.1.0"; sha256="1pg9w7yci9j0m1cxi0nwdpp6jwap0b7ql4xkh25kjbq3w5r8w8pr"; depends=[assertthat data_table Matrix R6 Rcpp simcausal speedglm stringr]; }; tmod = derive2 { name="tmod"; version="0.36"; sha256="054kg3rwcmrn1y1x1ba8wflb6m76nmf69g4yj3x1vw0qjjs421nh"; depends=[beeswarm plotwidgets tagcloud XML]; }; tmpm = derive2 { name="tmpm"; version="1.0.3"; sha256="1fqk39zyc07gh0ygi7pfljlnj6ih37jsb7bcxm05zcd4796wil8j"; depends=[reshape2]; }; + tmvmixnorm = derive2 { name="tmvmixnorm"; version="1.0.2"; sha256="04bjdlrz82v9skirap2fmngi2sv9xakkgmkgpwdv3qshszvx3wz4"; depends=[]; }; tmvnsim = derive2 { name="tmvnsim"; version="1.0-2"; sha256="03xsvsg9bqvgl98ywid3h91mmlhax5s6wvmypp3hq91vmc5kvxlp"; depends=[]; }; tmvtnorm = derive2 { name="tmvtnorm"; version="1.4-10"; sha256="1w3kmpx25l7rb80vpclqq4pbbv12qgysyqxjq3lp55l9nklkb7qs"; depends=[gmm Matrix mvtnorm]; }; tnam = derive2 { name="tnam"; version="1.6.5"; sha256="0jbwnsnn6875yprmh6y2i0bvr875hfsg7wfsj6ydmjpr5cpqqk56"; depends=[igraph lme4 network Rcpp sna vegan xergm_common]; }; tnet = derive2 { name="tnet"; version="3.0.14"; sha256="05cc6jrkjbwxzmgzq30h63xzhlgq8f0l3wx2q54vrv0wpvlvfphn"; depends=[igraph survival]; }; toOrdinal = derive2 { name="toOrdinal"; version="1.0-0.0"; sha256="1y46rcm6v2c5n71hdf5rgsgvy913wiazmml60mlxqb70dvz42649"; depends=[crayon testthat]; }; - toaster = derive2 { name="toaster"; version="0.5.5"; sha256="0ga4l3zp422scrgvz701rjznn013vhsbp4gh7v1inqp7kpxafky9"; depends=[foreach GGally ggmap ggplot2 ggthemes memoise network plyr RColorBrewer reshape2 RODBC scales slam wordcloud]; }; - togglr = derive2 { name="togglr"; version="0.1.3"; sha256="033d4mcl2w7nbjmaa5bc28skd63x34k4k4ib94nf11iwdj7bipkw"; depends=[assertthat dplyr getPass glue httr jsonlite keyring lubridate magrittr prettyunits purrr rstudioapi]; }; + togglr = derive2 { name="togglr"; version="0.1.33"; sha256="105c9vxa67bqccj31ksk5myfd0v7v0wbz6qqjhxqndlg7v6ggfzc"; depends=[assertthat dplyr getPass glue httr jsonlite keyring lubridate magrittr parsedate prettyunits purrr rstudioapi]; }; tokenizers = derive2 { name="tokenizers"; version="0.2.1"; sha256="006xf1vdrmp9skhpss9ldhmk4cwqk512cjp1pxm2gxfybpf7qq98"; depends=[Rcpp SnowballC stringi]; }; tolBasis = derive2 { name="tolBasis"; version="1.0"; sha256="0g4jdwklx92dffrz38kpm1sjzmvhdqzv6mj6hslsjii6sawiyibh"; depends=[lubridate polynom]; }; tolerance = derive2 { name="tolerance"; version="1.3.0"; sha256="17qh4ad1f3fbcpwlxxqh8qr9bnwjcl4yxk0l3fkbr6b2l4rc5p86"; depends=[rgl]; }; @@ -12132,9 +12668,11 @@ in with self; { topmodel = derive2 { name="topmodel"; version="0.7.3"; sha256="15w9id90d6l0i0ji3ln3sxnpispb6pgabk4waysqn0nh6y4lfdgb"; depends=[]; }; topologyGSA = derive2 { name="topologyGSA"; version="1.4.6"; sha256="0vas7qab5a86jb277ql63qjvfvx7iqqbcrwky7iyr0s8p8p794ia"; depends=[fields graph gRbase qpgraph]; }; topsis = derive2 { name="topsis"; version="1.0"; sha256="056cgi684qy2chh1rvhgkxwhfv9nnfd7dfzc05m24gy2wyypgxj3"; depends=[]; }; + tosca = derive2 { name="tosca"; version="0.1-2"; sha256="0zr0q0l4ic0hmmahgzm4hzjqzy0vxb31xsgmvqnvi8kya2bb68sh"; depends=[data_table htmltools lda lubridate RColorBrewer stringr tm WikipediR]; }; tosls = derive2 { name="tosls"; version="1.0"; sha256="03nqwahap504yvcksvxdhykplbzmf5wdwgpzm7svn8bymdc472v2"; depends=[Formula]; }; - totalcensus = derive2 { name="totalcensus"; version="0.3.0"; sha256="0i7srsfhskfcq7fdc3sq2rq2p6x508pwgbig86l92zki3ljm7qgs"; depends=[data_table magrittr purrr stringr]; }; - touch = derive2 { name="touch"; version="0.1-3"; sha256="1zzc4h6y0xmr3p7jl0vlvn4yswxz5akgvz8laxgmjgqzk926g9jl"; depends=[stringr]; }; + totalcensus = derive2 { name="totalcensus"; version="0.5.0"; sha256="0qmx1vmkvywkdl837vvyx8wl2ldab80m9gks2dfcqfancl8ijkm8"; depends=[data_table magrittr purrr stringr]; }; + touch = derive2 { name="touch"; version="0.1-4"; sha256="0xz3mvwhyn7wbqhbfp2klrnf89gvsncrv5y7fmk9ym3nkq7z26cg"; depends=[Rcpp]; }; + touchard = derive2 { name="touchard"; version="1.0"; sha256="0hjki9y94kzapkik48dpdz3x5ybi1miy94mvn4klsgs54z68apsi"; depends=[MASS nleqslv numDeriv plotrix]; }; tourr = derive2 { name="tourr"; version="0.5.5"; sha256="12293kp36kz056zd3fnsaf2gy4g8mcs79ws0vgbs7b0hx09sy9vp"; depends=[]; }; tourrGui = derive2 { name="tourrGui"; version="0.4"; sha256="1g9928q3x9rrd9k3k84r201wss3vjd2pngvbaflk5dqh9yf75jpq"; depends=[Cairo colorspace gWidgets RGtk2 tourr]; }; toxboot = derive2 { name="toxboot"; version="0.1.1"; sha256="0sw0mxhcq5k11swlhfpn6xk0nfsambh2yx1721zx75lya27wkmq1"; depends=[data_table tcpl]; }; @@ -12146,23 +12684,25 @@ in with self; { tracer = derive2 { name="tracer"; version="1.0.0"; sha256="1jdh4ljcz7d0w2y5miggqkvv397jdx7fn108hbjw93af2gnh698q"; depends=[clisymbols crayon prettycode]; }; tracheideR = derive2 { name="tracheideR"; version="0.1.1"; sha256="1x1jwzgs2aqb3k17mm9mhfhnbwcmilhkjaz9rl40rcg84xjqdrpl"; depends=[tgram]; }; track = derive2 { name="track"; version="1.1.9"; sha256="1d0hab7xyayyhyyrbv8nvpka1kzry4yx10fg8aqwkca3nm7n2q3c"; depends=[]; }; - trackdem = derive2 { name="trackdem"; version="0.4.1"; sha256="0r33ph7vk5i4nl3bw4642cpy743arly9xmn3n5jk2961q80m0kq5"; depends=[MASS neuralnet png raster Rcpp RcppArmadillo SDMTools shiny]; }; - trackeR = derive2 { name="trackeR"; version="1.0.0"; sha256="0z200jlkgcdxwss0ckbh3vqcfw56fi7pivr9vzf4rkwyf2n6v25s"; depends=[fda ggmap ggplot2 gridExtra gtable jsonlite leaflet raster RSQLite scam XML zoo]; }; - trackr = derive2 { name="trackr"; version="0.7.5"; sha256="1achrnkqnpdjp2vr1s7xsl8fdfdyifgv5vr00b3xq9pkr4jggj6z"; depends=[CodeDepends fastdigest ggplot2 gridGraphics histry htmltools knitr lattice miniUI RJSONIO rmarkdown rsolr shiny]; }; + trackdem = derive2 { name="trackdem"; version="0.4.2"; sha256="0isd3cs10z6sqm8sh2q577z8bhnagq9gqsvdlsv377lk1z7wd1ln"; depends=[MASS neuralnet png raster Rcpp RcppArmadillo SDMTools shiny]; }; + trackeR = derive2 { name="trackeR"; version="1.2.0"; sha256="07kfnla6dq1x62k43nl2d2s2bn1m1djzqzhks09f8fjz7vcbjgsy"; depends=[fda foreach ggmap ggplot2 ggridges gridExtra gtable jsonlite leaflet raster RSQLite scam sp xml2 zoo]; }; + trackr = derive2 { name="trackr"; version="0.10.2"; sha256="0nl4f476a6rq5hhbsh8snhgaspalrx7r74n6i7z51p39z8rdfsik"; depends=[CodeDepends fastdigest ggplot2 gridGraphics histry htmltools lattice miniUI RJSONIO rlang rmarkdown roprov rsolr shiny]; }; tractor_base = derive2 { name="tractor.base"; version="3.2.2"; sha256="1pbh9hand7h68vxap2qis3a7zs5qkrj2wxk8flqyvhx50p98wigv"; depends=[ore reportr shades]; }; trade = derive2 { name="trade"; version="0.5.3"; sha256="0v0yw261daag0hw3sc7dh2bpm8sd3r46xbcbcbxv7qb59rad756w"; depends=[antitrust]; }; + trafo = derive2 { name="trafo"; version="1.0.0"; sha256="03s341v264yvcyfli4smrsgak15123bilm8a944kg64s0z3hg79y"; depends=[FNN lmtest moments pryr]; }; traitr = derive2 { name="traitr"; version="0.14"; sha256="1pkc8wcq55229wkwb54hg9ndbhlxziv51n8880z6yq73zac1hbmf"; depends=[digest gWidgets proto]; }; traits = derive2 { name="traits"; version="0.3.0"; sha256="155y8j69214xxi1bfk07k30zlpm3q6fmz7ydhnkvw0kv4l0i5pc5"; depends=[crul data_table hoardr httr jsonlite readr rvest taxize tibble xml2]; }; traj = derive2 { name="traj"; version="1.2"; sha256="0mq6xdbxjqjivxyy7cwaghwmnmb5pccrah44nmalssc6qfrgys4n"; depends=[cluster GPArotation NbClust pastecs psych]; }; - trajectories = derive2 { name="trajectories"; version="0.1-4"; sha256="0vwfbx5s8ywasxwv8cld4s6r96vlyknxipp49rsfpqn94nawhwnx"; depends=[lattice sp spacetime]; }; + trajectories = derive2 { name="trajectories"; version="0.2-0"; sha256="0zd2a57pfc6aamh6d3n79sxlsvdwzrnq77xsfjyil4kvgh9ajd9c"; depends=[lattice sp spacetime]; }; trajr = derive2 { name="trajr"; version="1.1.0"; sha256="1wfncd3ays8wqz8hhwz46diyac49ivz31qm1rvy1gkbw71icmnd7"; depends=[plotrix signal]; }; - tram = derive2 { name="tram"; version="0.2-2"; sha256="1lyk2srbj5axh2h8y54sxn5l36sa9q9nkkb7vvbhms5dinld1z6j"; depends=[basefun Formula mlt multcomp sandwich survival variables]; }; + tram = derive2 { name="tram"; version="0.2-3"; sha256="1bbz9a57pmdalb9xmhawy9wjswcvr7lcb390plrs43lka2j55j6n"; depends=[basefun Formula mlt multcomp sandwich survival variables]; }; transcribeR = derive2 { name="transcribeR"; version="0.0.0"; sha256="0y2kxg2da71i962fhsjxsr2ic3b31fmffhj3gg97b0nykfpcviib"; depends=[httr]; }; translate = derive2 { name="translate"; version="0.1.2"; sha256="1w0xrg1xxwfdanlammmixf06hwq700ssbjlc3cfigl50p87dbc5x"; depends=[functional lisp RCurl RJSONIO]; }; translateR = derive2 { name="translateR"; version="1.0"; sha256="11kh9hjpsj5rfmzybnh345n1gzb0pdksrjp04nzlv948yc0mg5gm"; depends=[httr RCurl RJSONIO textcat]; }; translation_ko = derive2 { name="translation.ko"; version="0.0.1.5.2"; sha256="1w5xibg4znhd39f3i0vsqckp6iia43nblqxnzgj0ny6s7zmdq1wd"; depends=[]; }; transport = derive2 { name="transport"; version="0.9-4"; sha256="0ham0cla4qwfd6fqyckpdl2n2gm3qnl7ry1xi9kjvbajlcc0xwi2"; depends=[Rcpp]; }; trapezoid = derive2 { name="trapezoid"; version="2.0-0"; sha256="0f6rwmnn61bj97xxdgbydi94jizv1dbq0qycl60jb4dsxvif8l3n"; depends=[]; }; + trawl = derive2 { name="trawl"; version="0.2.1"; sha256="1ns4nk8zdnl2z9clc2q38sbb1ijkj86lcifxq7d111mcwsmpb6fi"; depends=[DEoptim MASS rootSolve Runuran squash TSA]; }; treatSens = derive2 { name="treatSens"; version="2.1.3"; sha256="159dpd4wg0i4cidg40lad665sm3j4qch8d1y3k9chwggbhcad5jn"; depends=[BH dbarts lme4 mvtnorm nlme Rcpp RcppEigen]; }; tree = derive2 { name="tree"; version="1.0-39"; sha256="0q2dnl1hvyaw76lkfq0i9d92z68r29ssb3a9j8jknnzx896x055x"; depends=[]; }; tree_bins = derive2 { name="tree.bins"; version="0.1.1"; sha256="1flrkhdqimsn8dxn97xzl1fykx916i1dis1bfany44yk0cjmd85g"; depends=[data_table dplyr rpart rpart_utils]; }; @@ -12173,27 +12713,29 @@ in with self; { treecm = derive2 { name="treecm"; version="1.2.2"; sha256="0vrawg4vvy270dn20gb2k99xi4q89l4mjz0mm7ikpz8wxqypzq2l"; depends=[plyr]; }; treedater = derive2 { name="treedater"; version="0.2.0"; sha256="18y1nbpinpcnczyn0kwlcnhbmnxv7814ms6l5qfikdqrxd2gx3si"; depends=[ape limSolve]; }; treelet = derive2 { name="treelet"; version="1.1"; sha256="0k3qhxjg7ws6jfhcvvv9jmy26v2wzi4ghnxnwpjm8nh7b90lbysd"; depends=[]; }; - treeman = derive2 { name="treeman"; version="1.1.2"; sha256="0imwg4wi85gjhbhpym5gs0my8kacx28l74m5xbfwqdi4gxpz3kkc"; depends=[ape bigmemory plyr RJSONIO stringr]; }; + treeman = derive2 { name="treeman"; version="1.1.3"; sha256="0xvazizpi3dbdgjd48ff4kg4dhsi2yzbnkk43pgyi21zii673yyn"; depends=[ape bigmemory plyr RJSONIO stringr]; }; treemap = derive2 { name="treemap"; version="2.4-2"; sha256="15bdgkdwryb55v82b3hpcx4ykfg5z7zf10h0wwknf6kl1kn34v90"; depends=[colorspace data_table ggplot2 gridBase igraph RColorBrewer shiny]; }; - treemapify = derive2 { name="treemapify"; version="2.5.0"; sha256="0s8qrm2ifbpm31zwyc2f2f6jyc04r06vy6vgq3k99aq67mz6krdq"; depends=[ggfittext ggplot2]; }; + treemapify = derive2 { name="treemapify"; version="2.5.2"; sha256="0iraqkvlk97xk8iv23nvcb144h195l3kbis3lm4r58prlgffyac3"; depends=[ggfittext ggplot2]; }; treeperm = derive2 { name="treeperm"; version="1.6"; sha256="0mz7p9khrsq4dbkijymfvlwr01y4fvs0x6si4x5xid16s2zsnmm4"; depends=[]; }; treeplyr = derive2 { name="treeplyr"; version="0.1.4"; sha256="140j1cd8a34fww8bi6b7mi3c7c1nik5sajk085nyfmjq7lxds0cy"; depends=[ape dplyr geiger lazyeval phytools Rcpp]; }; treespace = derive2 { name="treespace"; version="1.1.3"; sha256="0s3hmmjx2hf8l0piwz6mddd80hb5jsljnpzpakighqj9iiah5jjv"; depends=[ade4 adegenet adegraphics adephylo ape combinat distory fields htmlwidgets MASS phangorn phytools Rcpp rgl RLumShiny scatterD3 shiny shinyBS]; }; treethresh = derive2 { name="treethresh"; version="0.1-11"; sha256="1fksyn9mycr6dpw1yh5b3fa7fk7ndz7q39174daplm55jbrz1dr5"; depends=[EbayesThresh wavethresh]; }; trekfont = derive2 { name="trekfont"; version="0.9.2"; sha256="1njmllp6i10rafjq5c9z1qp3bmy8zr3nxv9cjw75w5fnrh50rlzh"; depends=[]; }; - trelliscope = derive2 { name="trelliscope"; version="0.9.8"; sha256="1581ss5c3f7mnv6s3p9f8kfwnks0l80kxwpxv9mq61w3lf9fksm2"; depends=[base64enc curl data_table datadr digest DistributionUtils ggplot2 hexbin htmltools htmlwidgets jpeg jsonlite lattice png rsconnect shiny]; }; + trelliscopejs = derive2 { name="trelliscopejs"; version="0.1.14"; sha256="1yjgn0a7jdfp1l3b1l8ss4pl23z9j4w27ny73mgmdbji02xqklyv"; depends=[autocogs base64enc digest DistributionUtils dplyr ggplot2 gtable htmltools htmlwidgets jsonlite knitr progress purrr rlang tidyr webshot]; }; trelloR = derive2 { name="trelloR"; version="0.1.0"; sha256="0d549yw9pfxs8a3q716z08fzg68bkm5l09cv5iqqkm4gyasrxsf4"; depends=[dplyr httr jsonlite]; }; - trend = derive2 { name="trend"; version="1.1.0"; sha256="06yifqbsvxbmk5gld4z2nnyhf59v8ks5xjwacmb25mv9r6bn388b"; depends=[extraDistr]; }; - trialr = derive2 { name="trialr"; version="0.0.1"; sha256="0v274a4w9pamlp9y7xs8hw783ib7z3p19gx94dciyvgm2wj9h7di"; depends=[BH gtools Rcpp RcppEigen rstan rstantools StanHeaders]; }; + trend = derive2 { name="trend"; version="1.1.1"; sha256="1bd567n15k2vpmgbx02584k5kglrc58mlb5kgd07wdss3knpa48q"; depends=[extraDistr]; }; + trialr = derive2 { name="trialr"; version="0.0.4"; sha256="1vav3kvmwl7lf2hp89i0vh6a8zc294m0ch24mw0a0ml6mvw9iwpx"; depends=[BH dplyr ggplot2 gtools loo magrittr Rcpp RcppEigen rstan rstantools StanHeaders stringr tidyr]; }; triangle = derive2 { name="triangle"; version="0.11"; sha256="0983bvywbyl0sms29j1hby2qy6p984vy4r0q1awh1f8gr01bbk5b"; depends=[]; }; triangulation = derive2 { name="triangulation"; version="0.5.0"; sha256="1zp09g0s0qpqgz2k6jx32pswh2zqyyd0b62lf1dx1p46m28dafkn"; depends=[]; }; - tribe = derive2 { name="tribe"; version="0.1.6"; sha256="0sx6hyfyg8x0vxq4l4gvv5kb8afrbjp3qk3s48l85vf5v1chwnhf"; depends=[bazar dplyr lazyeval magrittr rlist rstudioapi]; }; - tricolore = derive2 { name="tricolore"; version="1.0.3"; sha256="0lycsb29havx911q0fv4r184nr81w1c7yvy4sn6jqg35g2p1qqdv"; depends=[assertthat dplyr ggplot2 ggtern shiny]; }; + tribe = derive2 { name="tribe"; version="0.1.7"; sha256="1k12yzicf3p5wpgzpsv4kk5xzrdfx712z67kj9xmcr1mbs8l5skb"; depends=[bazar dplyr lazyeval magrittr rlist rstudioapi]; }; + tricolore = derive2 { name="tricolore"; version="1.2.0"; sha256="0mv72lh5z8drdn96nb39dz9gnzia6vm6vbl8z6ldmd952x727y0a"; depends=[assertthat dplyr ggplot2 ggtern shiny]; }; triebeard = derive2 { name="triebeard"; version="0.3.0"; sha256="1hqyz57gph02c9fdc07lxz113bbklif3g18sw8jan6pakhhdc7dz"; depends=[Rcpp]; }; trifield = derive2 { name="trifield"; version="1.1"; sha256="0xk48fkd5xa3mfn3pwdya0ihpkwnh20sgj3rc7fmzjil47kqscvy"; depends=[]; }; + trigpoints = derive2 { name="trigpoints"; version="1.0.0"; sha256="1hckjh2gb0fvd2c8x6mj0idpk3im7b831y7mbli1hqhry6qqdw15"; depends=[sf tibble]; }; trimTrees = derive2 { name="trimTrees"; version="1.2"; sha256="0v75xf5186dy76332x4w7vdwcz7zpqga8mxrb5all2miq2v45fi8"; depends=[mlbench randomForest]; }; - trimcluster = derive2 { name="trimcluster"; version="0.1-2"; sha256="0lsgbg93hm0w1rdb813ry0ks2l0jfpyqzqkf3h3bj6fch0avcbv2"; depends=[]; }; + trimcluster = derive2 { name="trimcluster"; version="0.1-2.1"; sha256="0013bpyq6mkvjn38qsmwnsxfiwxgwngnqxycxvgpgmiadhm8fjmn"; depends=[]; }; trimr = derive2 { name="trimr"; version="1.0.1"; sha256="0gcn18nwxmax9c35is0nldyh74cw8rg3gj60cixzs9qjnpb9xx3d"; depends=[]; }; + trinROC = derive2 { name="trinROC"; version="0.2"; sha256="1hdqf845sb44wrzjb0lk1n24zcf9psv7ck6cwvpjvlwscrqbfd0p"; depends=[ggplot2 gridExtra rgl]; }; trioGxE = derive2 { name="trioGxE"; version="0.1-1"; sha256="1ra86l3i7fhb6nsy8izixyvm6z23shv7fcjmnnpil54995j15ax4"; depends=[gtools mgcv msm]; }; trip = derive2 { name="trip"; version="1.5.0"; sha256="1qdq3hbqqaa0cmb47ssg3pr3jksni7g4xsc7bsj6wwdw62d9wzf6"; depends=[maptools MASS raster sp spatstat]; }; tripEstimation = derive2 { name="tripEstimation"; version="0.0-44"; sha256="1ylpyzlqr6l5haxq4icnlxw6vgvc2lsfz5sm2wqqm4m6h3p0i6s6"; depends=[lattice mgcv rgdal sp zoo]; }; @@ -12201,24 +12743,24 @@ in with self; { triversity = derive2 { name="triversity"; version="1.0"; sha256="1bar2bpy8jvj91jmzzdwy6rlvirsbxrzqnx4r825irqhc69gc53r"; depends=[data_tree Matrix]; }; tropAlgebra = derive2 { name="tropAlgebra"; version="0.1.1"; sha256="1idvhxhw2f6z8iq0nfdj6jmzy8913vid84rvln6rx2dkzw3s9wnl"; depends=[]; }; tropicalSparse = derive2 { name="tropicalSparse"; version="0.1.0"; sha256="1ay6i3pzz5lpvznxqln31mijp86p6z0df7rvp0gm4lxvn294m7f8"; depends=[]; }; - tropr = derive2 { name="tropr"; version="0.1.2"; sha256="1nm97sqmj4nfy7h8z58gmd9ipyrkw6skh2wx2g3ivm9pn3m50bwl"; depends=[digest httr magrittr rvest stringr xml2]; }; trotter = derive2 { name="trotter"; version="0.6"; sha256="0i8r2f2klkkfnjm7jhvga3gx6m7r97pd73d88004jzlm9ficspgy"; depends=[]; }; - trtf = derive2 { name="trtf"; version="0.3-2"; sha256="16nsrg68vn9p4s5al7fg6fg02cr3ccswzmhig7k4irprsnhdy4fr"; depends=[Formula libcoin mlt partykit sandwich variables]; }; + trread = derive2 { name="trread"; version="0.2.5"; sha256="0rygk71qrp9k3hw3fq80q5kf9fwwfpwlgl268ij2x84n399g16p2"; depends=[assertthat dplyr here htmltools httr magrittr readr scales stringr tibble]; }; + trtf = derive2 { name="trtf"; version="0.3-3"; sha256="1jvbh4c1s8nd4yf04i2rmrzx6rw92imdyp41wl40097133x9a0fb"; depends=[Formula libcoin mlt partykit sandwich variables]; }; trueskill = derive2 { name="trueskill"; version="0.1"; sha256="0mqvm64fcsxjlh789lqdk6l28q31yhh6jjirwjlgbpxxb90c5107"; depends=[]; }; truncSP = derive2 { name="truncSP"; version="1.2.2"; sha256="1hdi518j3sg9273g01l1jqlmqya3ppim82ma7zakwqpmsjmzw18q"; depends=[boot truncreg]; }; truncdist = derive2 { name="truncdist"; version="1.0-2"; sha256="02ihw4ixhadwr3sqm6r264i8vpcaz8pn69vkzabd8fwqvn5vcj5q"; depends=[evd]; }; truncgof = derive2 { name="truncgof"; version="0.6-0"; sha256="0b499i9zjwvva5jfl9fj02jjrgy8myxqfjwa0cjg0jrpgxczgwg8"; depends=[MASS]; }; truncnorm = derive2 { name="truncnorm"; version="1.0-8"; sha256="0zn88wdd58223kibk085rhsikl4yhlrwiyq109hzjg06hy6lwmj9"; depends=[]; }; - truncreg = derive2 { name="truncreg"; version="0.2-4"; sha256="1rmf1v2khsx82yzyyk51k7fbnbchf21lj9yqrays1z2mx3p1l1fc"; depends=[maxLik]; }; + truncreg = derive2 { name="truncreg"; version="0.2-5"; sha256="1scbjh5k1b8cjjavax08grlxdfs75s63dss0ifpz4d0axc4nm3iy"; depends=[maxLik]; }; trust = derive2 { name="trust"; version="0.1-7"; sha256="013gmiqb6frzsl6fsb5pqfdapwdxas0llg954hlcvgki9al5mlg3"; depends=[]; }; trustOptim = derive2 { name="trustOptim"; version="0.8.6.2"; sha256="1nsl8jd6cna52b5dd92jw3sh84jqpg7gazskn7166bcjbph19bf7"; depends=[Matrix Rcpp RcppEigen]; }; tryCatchLog = derive2 { name="tryCatchLog"; version="1.0.2"; sha256="0452xcfv98d2nfdhi9l2033s381lsa1kjghmrk05d3kc88d22np7"; depends=[futile_logger]; }; - tsBSS = derive2 { name="tsBSS"; version="0.5.1"; sha256="0hysb132cjymlqg5bcsqdvii7kyx3rh07c4bsds636j1cypi86kd"; depends=[boot forecast ICtest JADE Rcpp RcppArmadillo]; }; + tsBSS = derive2 { name="tsBSS"; version="0.5.2"; sha256="00brzy0dkvdwrsf5jlpyp6ggwc2wkmdkb3l6h8fx1i3lmhnaqhkg"; depends=[boot forecast ICtest JADE Rcpp RcppArmadillo]; }; tsDyn = derive2 { name="tsDyn"; version="0.9-48"; sha256="01yqfd156ffnxy9wyd3s9vkpkc9n0davs1cq606sbpvvkmphnws3"; depends=[foreach forecast MASS Matrix mgcv mnormt nnet tseries tseriesChaos urca vars]; }; tsModel = derive2 { name="tsModel"; version="0.6"; sha256="0mkmhzj4g38ngzfcfx0zsiqpxs2qpw82kgmm1b8gl671s4rz00zs"; depends=[]; }; tsPI = derive2 { name="tsPI"; version="1.0.2"; sha256="0lw4s7gxn4xldsk5f3dz27bb9jywa14195703b5q1497h9j966gk"; depends=[KFAS]; }; tsSelect = derive2 { name="tsSelect"; version="0.1.8"; sha256="0ysijzhhwaj5n7h50jacshnla6d0h61q0f6lj19ic0lwvlz4yazy"; depends=[forecast]; }; - tsallisqexp = derive2 { name="tsallisqexp"; version="0.9-2"; sha256="19535zlr6gjg45f8z6hm98pamgn20z19m8qb63997vbj4azsrjfv"; depends=[]; }; + tsallisqexp = derive2 { name="tsallisqexp"; version="0.9-3"; sha256="0mzqplsj2w4a7jnav43afyk8ymy6p444j7km6kc8c2g4aifpgxcb"; depends=[]; }; tsbox = derive2 { name="tsbox"; version="0.0.3"; sha256="1dcfp0lg6fvhhkspgk9a41crnfq7gx50ll4a4a0qil795349srnj"; depends=[anytime data_table]; }; tsbridge = derive2 { name="tsbridge"; version="1.1"; sha256="0mry3ia54cdfydpzm8asrq1ldj70gnpb5dqzj51w0jiyps2zlw6f"; depends=[mvtnorm tsbugs]; }; tsbugs = derive2 { name="tsbugs"; version="1.2"; sha256="130v4x6cfy7ddvhijsnvipm4ycrispkj1j0z5f326yb4v5lrk91x"; depends=[]; }; @@ -12235,17 +12777,18 @@ in with self; { tsfknn = derive2 { name="tsfknn"; version="0.1.0"; sha256="0gzij2fbgwavpsqmr7cp012lhii23fav4nsrbc2w9qingglcnqd1"; depends=[ggplot2]; }; tsgui = derive2 { name="tsgui"; version="0.0.3"; sha256="16cx68gq2f63wx7mhbv0aq6pr71wfbc035kjbjjsfrbagaq4ib13"; depends=[RandomFieldsUtils tcltk2 tkrplot]; }; tsiR = derive2 { name="tsiR"; version="0.3.0"; sha256="1brlwsbs4rac8z6cf1q3xm1apdi4ban5hj7p3qvz2yx810gbxp1d"; depends=[ggplot2 kernlab reshape2]; }; - tsibble = derive2 { name="tsibble"; version="0.3.0"; sha256="0rakw6fwkxlvdwzw5cj31a6dkq88jr2ffrkdwc41vasdxzf6xwrc"; depends=[dplyr lubridate pillar purrr Rcpp rlang tibble tidyr tidyselect]; }; + tsibble = derive2 { name="tsibble"; version="0.5.3"; sha256="0i026q33zsv184rbywbmcd8m7cilg89m7ai0n1m74z6c57zs8lc0"; depends=[anytime dplyr lubridate purrr Rcpp rlang tibble tidyr tidyselect]; }; tsintermittent = derive2 { name="tsintermittent"; version="1.9"; sha256="1mrb6yrsjwj6j40n97sgg42ddvwhjnaiq9k7ka249bbq01gf2975"; depends=[MAPA]; }; + tsmp = derive2 { name="tsmp"; version="0.3.2"; sha256="1q1rdlx90dwk2p9s7i3246yi192pwysflphfvd20ldc0qm815sml"; depends=[audio doSNOW foreach magrittr progress]; }; tsna = derive2 { name="tsna"; version="0.2.0"; sha256="09q01jzj1rnv2f2jf7djnq5xrkp7lvykdbf4bfswsy0f95j0asx2"; depends=[network networkDynamic statnet_common]; }; tsne = derive2 { name="tsne"; version="0.1-3"; sha256="0s8cv2pndkddq62rzlgzgfdjp1vjv5hz5i5957sllnb97vbzbzb6"; depends=[]; }; tsoutliers = derive2 { name="tsoutliers"; version="0.6-6"; sha256="0q4lkqasnsps8lzpiyk074nfhv29sbma080729c8l3ba1sa9pmyn"; depends=[forecast KFKSDS stsm]; }; tspmeta = derive2 { name="tspmeta"; version="1.2"; sha256="028jbbd0pwpbjq4r6jcc1h0p7c4djcb9d2mvgzw1rmpphaxjvrkd"; depends=[BBmisc checkmate fpc ggplot2 MASS splancs stringr TSP vegan]; }; tsqn = derive2 { name="tsqn"; version="1.0.0"; sha256="1iv1wwa6a9824dbgfk5a609szppc3a8j250z74hb8csjvwwx9qq9"; depends=[fracdiff MASS robustbase]; }; - tstools = derive2 { name="tstools"; version="0.3.6.1"; sha256="066bkm4hqkbhslk3f3vk9w4hzv3smg718vpav04byrvlcdiibv0c"; depends=[data_table jsonlite xts zoo]; }; + tstools = derive2 { name="tstools"; version="0.3.8"; sha256="0daxrp91hxc367hlzla0s7x5dddnx462239jcq0ickx6awkk753g"; depends=[data_table jsonlite xts zoo]; }; tswge = derive2 { name="tswge"; version="1.0.0"; sha256="0wj0kyb1dcwfn8wjp7skgcflc48cr4va0i0jg8x970658if7z6fz"; depends=[astsa MASS PolynomF signal waveslim]; }; tsxtreme = derive2 { name="tsxtreme"; version="0.3.1"; sha256="0cfska93ws5x11pslcdhf5rrshxzh6ddlgmfkl9zlci2rqdbwz35"; depends=[evd MASS mvtnorm]; }; - ttScreening = derive2 { name="ttScreening"; version="1.5"; sha256="0qn8lkvgvqpmm368fwpqkm09yaj9mw42mjlikyiwpv2wrgbpmg9n"; depends=[corpcor limma MASS matrixStats sva]; }; + ttScreening = derive2 { name="ttScreening"; version="1.6"; sha256="1i8c9l3sdkzl99zxxyfqm84vkh6wjdh3a32l5q8ikf74g9dhxkf4"; depends=[corpcor limma MASS matrixStats simsalapar sva]; }; ttbbeer = derive2 { name="ttbbeer"; version="1.1.0"; sha256="1azffcizm3460kxvrxxkilc6qxspyi247x8drrw5ywfichwhmdhc"; depends=[]; }; tth = derive2 { name="tth"; version="4.3-2-1"; sha256="19rvmyprl1nk9mmngk6dax8rnli10msfvm3vzp86pbdjxnsh3hjc"; depends=[]; }; tttplot = derive2 { name="tttplot"; version="1.1.1"; sha256="0rmgp1888y07w0h8kwq1azpr6bysjq4pyjf6ygpra75jj4563wx9"; depends=[]; }; @@ -12254,71 +12797,76 @@ in with self; { tuber = derive2 { name="tuber"; version="0.9.7"; sha256="0ypfzxk0cyb81y61xxj4bhr5v9afnd7z9wi09xippjv8djbm78yb"; depends=[dplyr httr jsonlite plyr purrr]; }; tubern = derive2 { name="tubern"; version="0.1.0"; sha256="0wpn4aig6r1kpncrgrqra4kr0f07rdq7z4p2k0h28f7kww6l52vv"; depends=[httr jsonlite]; }; tuckerR_mmgg = derive2 { name="tuckerR.mmgg"; version="1.5.1"; sha256="0lrylh0np0kbl4xx3gmlvid0g11fh0ad39wdwbz6hrmf5pzsjdjq"; depends=[]; }; - tufte = derive2 { name="tufte"; version="0.3"; sha256="1fpv9ilf8ajynz38ny0abfnq20xzpgwbxaxj8ijwy8viki893bd0"; depends=[htmltools knitr rmarkdown xfun]; }; + tufte = derive2 { name="tufte"; version="0.4"; sha256="0vp7rsb8qa21mkcfxy57sgb26nm4s492r0069rmn8fcpazcsbzqb"; depends=[htmltools knitr rmarkdown xfun]; }; tufterhandout = derive2 { name="tufterhandout"; version="1.2.1"; sha256="04fvvbx69a28nk7i4wz5ynamz1yvsa2ibz542r1xaq1ikk0ywqbw"; depends=[knitr rmarkdown]; }; tukeytrend = derive2 { name="tukeytrend"; version="0.6"; sha256="0lsxfpkim4fkrm2lrjhn3w55c0p694vbkal3mjqk6vnmnycg9d71"; depends=[lme4 Matrix mgcv multcomp nlme pbkrtest]; }; tumblR = derive2 { name="tumblR"; version="1.1"; sha256="0gl6q6rff9bp21gvi3bz8kmwbhimxqrv1mmzwshl1ys9r7d4dvps"; depends=[httr RCurl RJSONIO stringr]; }; tumgr = derive2 { name="tumgr"; version="0.0.4"; sha256="1ylfmrsg177g75l2scjpgw6v4dpz62r7cy89pql9zd5zqy167xqj"; depends=[minpack_lm]; }; - tuneR = derive2 { name="tuneR"; version="1.3.2"; sha256="1xk66rrahfvvbjzpx2mkbmlmyj0l3vidd8kz24f72wh56gbdgbsa"; depends=[signal]; }; - tuneRanger = derive2 { name="tuneRanger"; version="0.2"; sha256="0dk8nnh3sp0mlfr4vfc33r83a5kdgdi3sbqs0v4311i6dv72c1hn"; depends=[BBmisc DiceKriging lhs lubridate mlr mlrMBO ParamHelpers ranger smoof]; }; + tuneR = derive2 { name="tuneR"; version="1.3.3"; sha256="0av978m4h2iqazyfq6n2cgkh4wpllihh7s29lah2nb8ngc0w5hxx"; depends=[signal]; }; + tuneRanger = derive2 { name="tuneRanger"; version="0.3"; sha256="1hj77fy522lr68h3ypsms96pkrahhn0sp50cggmnf60qdqcgdbjq"; depends=[BBmisc DiceKriging lhs lubridate mlr mlrMBO ParamHelpers ranger smoof]; }; tuple = derive2 { name="tuple"; version="0.4-02"; sha256="0fm8fsdfiwknjpc20ivi5m5b19r9scdxhzij70l8qi3ixw1f0rnk"; depends=[]; }; turboEM = derive2 { name="turboEM"; version="2018.1"; sha256="1xjpm2dxn48nflqriplxxbrjxv0spix6v7cp76gyh4kj8ylnbna6"; depends=[doParallel foreach iterators numDeriv quantreg]; }; turfR = derive2 { name="turfR"; version="0.8-7"; sha256="007jmkppfv1x4zzvvd65fhg5k15ybjhsya2zfjgwm77wm34y81ca"; depends=[dplyr]; }; turner = derive2 { name="turner"; version="0.1.7"; sha256="1xckb750hbfmzhvabj0lzrsscib7g187b44ag831z58zvawwh772"; depends=[tester]; }; tutorial = derive2 { name="tutorial"; version="0.4.3"; sha256="0sxdlpw0w4azlaxdlk36ycrric6pbj2zi4nyv26pgsp0cr1hrx6r"; depends=[base64enc knitr markdown rjson]; }; tuts = derive2 { name="tuts"; version="0.1.1"; sha256="0mwc6lsnhxww041wh3020wz7w812asp1d6djv4n9pl7jil0kvkry"; depends=[coda doParallel foreach lomb mcmcplots rjags truncnorm]; }; - tvR = derive2 { name="tvR"; version="0.2.0"; sha256="06h90r0mlflsbbvg09s1ap8b16yfk285ma8rzzdi7cmkfdc5hlyx"; depends=[filling Matrix Rcpp RcppArmadillo Rdpack]; }; + tvR = derive2 { name="tvR"; version="0.3.0"; sha256="1pg13bvndqyyi2yl1bg3bkdh2xq060ihl25j3a91nahwasy3225m"; depends=[Matrix Rcpp RcppArmadillo Rdpack]; }; tvReg = derive2 { name="tvReg"; version="0.3.0"; sha256="16z032j5wxyvgc29m8sgh4wcvsdam6a0srjwym52885rdslbkmjy"; depends=[bvarsv MASS Matrix systemfit vars]; }; tvd = derive2 { name="tvd"; version="0.1.0"; sha256="07al7gpm81a16q5nppsyc5rhv6zzkcvw72isx955b1q189v073aw"; depends=[Rcpp]; }; tvm = derive2 { name="tvm"; version="0.3.0"; sha256="1iv0qrks1zdiq8jaqr1h46snq8wc3g3q017hxc8zc6fqnsz1whf6"; depends=[ggplot2 reshape2]; }; twang = derive2 { name="twang"; version="1.5"; sha256="1sp1vb6l0mwpy9b9my5d3spc0q0zs7xg4dkmi4cl7hy7m9xy1dbk"; depends=[gbm lattice latticeExtra survey xtable]; }; tweedie = derive2 { name="tweedie"; version="2.3.2"; sha256="10fv998qjxsyx0h94fi0xbh6xbf24nwgh254n9zfnmix9vk2cqls"; depends=[]; }; - tweenr = derive2 { name="tweenr"; version="0.1.5"; sha256="06h0vhxlljmvxg4a62sqrq53lpbvl5w19dqcpyw1jqvrb5agidnq"; depends=[Rcpp]; }; - tweet2r = derive2 { name="tweet2r"; version="1.0"; sha256="0v7xshk389k3aws72ww9kqc2ycw6l6q9xmhps47g3bdl64jy8bay"; depends=[ggmap ggplot2 maptools plyr rgdal ROAuth RPostgreSQL RSQLite sp spacetime spatstat splancs streamR]; }; + tweenr = derive2 { name="tweenr"; version="1.0.0"; sha256="0r98ln17fdzdda66rsj6lqwi843anl6m7c287kbzc4gkj931cifh"; depends=[farver magrittr Rcpp rlang]; }; + tweet2r = derive2 { name="tweet2r"; version="1.1"; sha256="1ivzc05af3fbdxn99lcphm74qs64lz8577zzi6r52r9xjpsqpqzi"; depends=[ggmap ggplot2 maptools plyr rgdal ROAuth RPostgreSQL RSQLite sp spacetime spatstat splancs streamR]; }; twfy = derive2 { name="twfy"; version="0.1.0"; sha256="14xxl9y8iagnn5jd06k6jyy4wk7crm64svz8h0zmzcvg47k8bwc7"; depends=[httr jsonlite]; }; twiddler = derive2 { name="twiddler"; version="0.5-0"; sha256="0r16nfk2afcw7w0j0n3g0sjs07dnafrp88abwcqg3jyvldp3kxnx"; depends=[]; }; twilio = derive2 { name="twilio"; version="0.1.0"; sha256="0b70vcc2bd5jpd2d82i2k828q90viah0b9abz2r627bbyxivpcnd"; depends=[httr jsonlite lubridate magrittr purrr]; }; twitteR = derive2 { name="twitteR"; version="1.1.9"; sha256="1hh055aqb8iddk9bdqw82r3df9rwjqsg5a0d2i0rs1bry8z4kzbr"; depends=[bit64 DBI httr rjson]; }; + twl = derive2 { name="twl"; version="1.0"; sha256="0n2r40ddsr5zpzi92k7f0lvq78k5cmfbqzjxvr78hwq6j13dhar3"; depends=[corrplot data_table MCMCpack Rfast]; }; twoStageGwasPower = derive2 { name="twoStageGwasPower"; version="0.99.0"; sha256="1xvy6v444v47i29aw54y29xiizkmryv8p3mjha93xr3xq9bx2mq7"; depends=[]; }; twostageTE = derive2 { name="twostageTE"; version="1.3"; sha256="0mkxs3lmzja51zdrf5himhwcdygpj6czhdd2bydakm26kvw7znwr"; depends=[isotone]; }; + twoway = derive2 { name="twoway"; version="0.6.2"; sha256="0q053jvb2sa762bjnpzkxzdcq1wk82ynp4rjl4j6qncqccvqq0c3"; depends=[]; }; txtplot = derive2 { name="txtplot"; version="1.0-3"; sha256="1949ab1bzvysdb79g8x1gaknj0ih3d6g63pv9512h5m5l3a6c31h"; depends=[]; }; - txtq = derive2 { name="txtq"; version="0.0.4"; sha256="0ipfc68m7l72wdnd4lmy7jm2dxs4xayzrd0g58m44dbikgwnw20i"; depends=[base64url filelock fs R6]; }; + txtq = derive2 { name="txtq"; version="0.1.1"; sha256="1nnwxqxmh820b8ksbqk3g7lnf895684k60k5r1ahh105mqccq2x9"; depends=[base64url filelock fs R6]; }; types = derive2 { name="types"; version="1.0.0"; sha256="01shcin8wjbhbmzl979fj3008xqxssw90g3bjg42cnjxkmnaql59"; depends=[]; }; uCAREChemSuiteCLI = derive2 { name="uCAREChemSuiteCLI"; version="0.1.2"; sha256="0nvpmlp8dd250xn3g936wm52s2m6hb82lpvgpdak44ydhhswds0m"; depends=[ChemmineR usethis]; }; - uGMAR = derive2 { name="uGMAR"; version="2.0.2"; sha256="1rbhinq3s818c11kj5ybz1v3xmfpzz55i7mh20a0r3pq64jdh7kc"; depends=[Brobdingnag]; }; + uGMAR = derive2 { name="uGMAR"; version="3.0.1"; sha256="19sxzsz21nysxiydcgm0g4sd40jmqvysrxka0j2zcg7yfmg3hr5w"; depends=[Brobdingnag pbapply]; }; uHMM = derive2 { name="uHMM"; version="1.0"; sha256="1516ipadxi7rc1dbinr5rva2fbcr5i2zg3rlli5wy7r6naf8fzzl"; depends=[chron class cluster clValid corrplot FactoMineR HMM tcltk2 tkrplot]; }; uaparserjs = derive2 { name="uaparserjs"; version="0.1.0"; sha256="1zhz39jrvi64sj0wvwkm4y8gakfp6kz1knw4wn08kk4fa9ymyjvq"; depends=[dplyr purrr V8]; }; - uavRmp = derive2 { name="uavRmp"; version="0.5.3"; sha256="05annx1vzpssxf5ycrgk2dizgl83zbwvl2x3bj8r5d8w5lvlpwrb"; depends=[brew data_table devtools gdalUtils geosphere htmltools htmlwidgets log4r maptools raster rgdal rgeos roxygen2 sf sp spatial_tools stringr zoo]; }; - ubci = derive2 { name="ubci"; version="0.0.2"; sha256="1k2fgzz286qyzqk216saz52s6044zhwgzgv6ra03513vgm9w45ld"; depends=[dplyr httr lubridate magrittr tibble tidyr]; }; + uavRmp = derive2 { name="uavRmp"; version="0.5.4"; sha256="0djx6z9489pr03bf01y2d79ar840q4ffj39j72c8phz27yz40y04"; depends=[brew data_table devtools gdalUtils geosphere htmltools htmlwidgets log4r maptools raster rgdal rgeos roxygen2 sf sp spatial_tools stringr zoo]; }; + ubci = derive2 { name="ubci"; version="0.0.3"; sha256="0pczbasicng6zl44kh61jcx8mbmg2na14q2lni10z1liwwk3swsp"; depends=[dplyr httr lubridate magrittr tibble tidyr]; }; ubeR = derive2 { name="ubeR"; version="0.1.4"; sha256="1ilclna04hd1ykcp2b3gcj0v4qznwx0d24yavxnf2yh5d91wr6z2"; depends=[dplyr ggmap ggplot2 ggthemes googleway httpuv httr jsonlite]; }; ucbthesis = derive2 { name="ucbthesis"; version="1.0"; sha256="0l855if3a7862lxlnkbx52qa617mby634sbb2gkprj21rwd7lcbp"; depends=[knitr stringr]; }; ucminf = derive2 { name="ucminf"; version="1.1-4"; sha256="01vggwg1w71k98qs6fhb0x1843vi322mf4g3hbclks94kcpkisx2"; depends=[]; }; - udapi = derive2 { name="udapi"; version="0.1.1"; sha256="0mhkf1s7pv8d5hbianzcpc3jxps2i6y955n6bplikcz1l1pnb9ib"; depends=[curl httr]; }; - udpipe = derive2 { name="udpipe"; version="0.6"; sha256="0mzqyp3mhcchfknpspc79fmf5sf9n94dxpvssl393p2fd92gkajy"; depends=[data_table Matrix Rcpp]; }; + udapi = derive2 { name="udapi"; version="0.1.3"; sha256="0qyn6fdh8ia913hn2dl0x99xsm20ps8zm52snswlyb00prinm668"; depends=[curl httr]; }; + udpipe = derive2 { name="udpipe"; version="0.7"; sha256="1dmrnlmj3aj01jzhixdkvglqfdsrkqnp52xrvz5pblmwmcdmjflf"; depends=[data_table Matrix Rcpp]; }; udunits2 = derive2 { name="udunits2"; version="0.13"; sha256="0yav7rm2afcx67xqrknybxgz7x63w78zyxa0xifvc0k2gz0d6mfi"; depends=[]; }; - uiucthemes = derive2 { name="uiucthemes"; version="0.2.0"; sha256="1z1wx89b2d7z1a2zc4ai05v9slfpidja8f561jcsrcdi9hz2yp81"; depends=[rmarkdown]; }; + ufs = derive2 { name="ufs"; version="0.0.1"; sha256="0sp4963ijhn5zgni2kcx1shf59p7dr0pigb368fp8b01077q8qqn"; depends=[]; }; + uiucthemes = derive2 { name="uiucthemes"; version="0.2.1"; sha256="1l96mch9r5npsdv1v4qfyj43ana7a2ff7yj04q6fzhh27v0fx7ak"; depends=[rmarkdown]; }; ukbabynames = derive2 { name="ukbabynames"; version="0.1.1"; sha256="0vrwcf3hixd40ag6kb289anq2ys2k6vdhhsrjbizvndkyn8sr0r0"; depends=[]; }; ukbtools = derive2 { name="ukbtools"; version="0.11.0"; sha256="0ww8knrivykk8zx0mqc0bg9f1m64psdpjcxvdn4alhs88ywc71cf"; depends=[data_table dplyr ggplot2 magrittr plyr purrr readr scales stringr tibble tidyr XML]; }; - ukgasapi = derive2 { name="ukgasapi"; version="0.13"; sha256="0bnblha96ldbxj0nqhcj26d1dk2xm6nkjqqval1jlc2pki20mr9n"; depends=[RCurl XML]; }; - umap = derive2 { name="umap"; version="0.1.0.3"; sha256="039pmpbh60m9p3i07mg4gv01p3x4ad0ngpcw76dgarr3yqkx4ic6"; depends=[Rcpp reticulate]; }; + ukgasapi = derive2 { name="ukgasapi"; version="0.15"; sha256="051bavhsqybg0m1nkv52k9vy5a80aanas146ndx0k9dn2mqmpsw7"; depends=[RCurl XML]; }; + umap = derive2 { name="umap"; version="0.2.0.0"; sha256="1qdq3isrv6dqz462sfwk1albbs6h8lcnqidhwr1jxa09bwinhk7q"; depends=[Rcpp reticulate RSpectra]; }; ump = derive2 { name="ump"; version="0.5-8"; sha256="1sg226caq9y41cwl7wr5s9z3bpq2j5p6rj6fy2pasbzimgzw0byx"; depends=[]; }; - umx = derive2 { name="umx"; version="2.8.0"; sha256="06r93dli8rxj0b7kz2s5395xnr8ka4bikdvfda882jjnv2rprdbb"; depends=[cowplot DiagrammeR ggplot2 knitr MASS Matrix mvtnorm nlme numDeriv OpenMx polycor R2HTML RCurl sfsmisc xtable]; }; + umx = derive2 { name="umx"; version="2.8.5"; sha256="1fi4k6asw3rmh88rvdwrf63xi5yqdd9h0bq1bs10j7h9mw9a119j"; depends=[cowplot DiagrammeR ggplot2 knitr MASS Matrix MuMIn mvtnorm nlme numDeriv OpenMx polycor R2HTML RCurl sfsmisc xtable]; }; unbalanced = derive2 { name="unbalanced"; version="2.0"; sha256="18hy9nnq42s1viij0a5i9wzrrfmmbf7y3yzjzymz2wnrx4f2pqwv"; depends=[doParallel FNN foreach mlr RANN]; }; unbalhaar = derive2 { name="unbalhaar"; version="2.0"; sha256="0v6bkin1cakwl9lmv49s0jnccl9d6vdslbi1a7kfvmr5dgy760hs"; depends=[]; }; uncertainty = derive2 { name="uncertainty"; version="0.2.0"; sha256="1mq14ny7l3gy3wjsqijnm37azavyapxszjnckd861h4hgcpdcdjz"; depends=[mvtnorm triangle]; }; uncmbb = derive2 { name="uncmbb"; version="0.2.0"; sha256="0cvbh7a81g52hd2qzp23jwwjd5406iszf4wilgrz8sjfrfgybgfm"; depends=[dplyr rlang]; }; understandBPMN = derive2 { name="understandBPMN"; version="1.1.0"; sha256="11ijxr5nzg6ivx2c9shgba9nfjb8ixypbj8jvhl7zjkwjrpb6f1y"; depends=[devtools dplyr purrr R_utils Rcpp tibble tidyr XML]; }; - unfoldr = derive2 { name="unfoldr"; version="0.6.5"; sha256="18k1bq3vdsiyg55zvs0sx5wgmslxvj283g742rkh214mfy5d89l5"; depends=[]; }; + unfoldr = derive2 { name="unfoldr"; version="0.6.9"; sha256="1zr5k1vcqp16zc9i538fk5gcs900nsl140vx2dpi818jv84md1ij"; depends=[]; }; ungeneanno = derive2 { name="ungeneanno"; version="0.1.6"; sha256="0fm47vmzn4z73pn37p94r84lbkg5amk0sl78304ibwz0rhlda0y5"; depends=[httr XML]; }; + ungroup = derive2 { name="ungroup"; version="1.1.1"; sha256="0jrxxp93ak9bva98j3nmkhrb7znz7lpywk56415k4b2rzpy3j7fs"; depends=[MortalitySmooth pbapply Rcpp RcppEigen Rdpack rgl]; }; uniCox = derive2 { name="uniCox"; version="1.0"; sha256="1glgk6k8gwxk3haqaswd2gmr7a2hgwjkwk2i1qc5ya7gg8svyavv"; depends=[survival]; }; uniReg = derive2 { name="uniReg"; version="1.1"; sha256="0wjc7pgaisvk26j7grxp2ypsabb5my9wg6c9i5w9zhh5jdx1fdab"; depends=[DoseFinding MASS mvtnorm quadprog SEL]; }; uniah = derive2 { name="uniah"; version="1.0"; sha256="19zwy33gwa749i81mi9h05k8k3l4xbbln3k6q70fa7ic5lqbbdzj"; depends=[ahaz Iso survival]; }; unifDAG = derive2 { name="unifDAG"; version="1.0.1"; sha256="1zf2pclddswrssil7ikq75449ks3070jxkzy2lmggq9gyipdypps"; depends=[gmp graph]; }; + uniformly = derive2 { name="uniformly"; version="0.1.0"; sha256="0n3s0x05v4d79jn51nwj06gm074rgy269f57y2q5z0bkwyp6yc7n"; depends=[pgnorm]; }; uniftest = derive2 { name="uniftest"; version="1.1"; sha256="0a37m7l3lc6rznx10w9h9krnn5paim2i2wvw47ckwag7bv0d4pm4"; depends=[orthopolynom]; }; uniqtag = derive2 { name="uniqtag"; version="1.0"; sha256="025q71mzdv3n1jw1fa37bbw8116msnfzcia01p1864si04ch5358"; depends=[]; }; unitedR = derive2 { name="unitedR"; version="0.3.1"; sha256="06plbhjbn1gflpxarn21knhiwfr02vxprak9qcghl30fkkymd02r"; depends=[plyr]; }; unitizer = derive2 { name="unitizer"; version="1.4.5"; sha256="1ml1x9jvwmh8mg2w2j2g8ffibw6a1ihj0aih11zzf4gjhs0w5p9d"; depends=[crayon diffobj]; }; - units = derive2 { name="units"; version="0.6-0"; sha256="06g4ihhxvcc9d28zd1nznd2h5fd8zamq7jcxw6qj0ghb8878mw2n"; depends=[Rcpp]; }; + units = derive2 { name="units"; version="0.6-1"; sha256="0gafl1d89gvmpndmkb9ng7dqhvnb5cx9igza0rjdrdn285icb07i"; depends=[Rcpp]; }; unittest = derive2 { name="unittest"; version="1.3-0"; sha256="0haf3s3pc5bhsm6y5njghr9w8ifsjxczm5r7g0ynylwzvd019n8b"; depends=[]; }; univOutl = derive2 { name="univOutl"; version="0.1-4"; sha256="041cc1jn95zababc4i84c378i204zkn865k2vd7mk1piwm3qkrj5"; depends=[Hmisc robustbase]; }; unix = derive2 { name="unix"; version="1.3"; sha256="1l5w22j0h3qzya13wx7y8lx2baw496vcmn39l2y8r1v38as9dybc"; depends=[]; }; @@ -12330,6 +12878,7 @@ in with self; { unsystation = derive2 { name="unsystation"; version="0.2.0"; sha256="02da7wzzk5bwd475i67v5x04ay2bn5yd5xffl1asqcqxcc5sy0m8"; depends=[doParallel foreach iterators Rcpp RcppArmadillo]; }; untb = derive2 { name="untb"; version="1.7-3"; sha256="1324gn42qxw4cf3jg9vd8nwxiw4w4fg6p2xhzmn636q5wlziln5c"; depends=[Brobdingnag partitions polynom]; }; unvotes = derive2 { name="unvotes"; version="0.2.0"; sha256="0wanvivwm1nmqadq2vapg27kasnjnr0a4np2kw54wj9pg21izqic"; depends=[]; }; + updog = derive2 { name="updog"; version="1.0.1"; sha256="0y2w62f25an1d7fpkiqhimak0ww201r873sjb08akwf82v4k34wz"; depends=[assertthat doParallel foreach ggplot2 ggthemes Rcpp RcppArmadillo stringr]; }; uplift = derive2 { name="uplift"; version="0.3.5"; sha256="11xikfmg6dg8mhwqq6wq9j9aw4ljh84vywpm9v0fk8r5a1wyy2f6"; depends=[coin MASS penalized RItools tables]; }; upmfit = derive2 { name="upmfit"; version="0.1.0"; sha256="0f0rk606v17abgw3mwlwihl6fsxprp44h2xbhv1675i18i36vbgx"; depends=[mcmcplots R2jags]; }; uptasticsearch = derive2 { name="uptasticsearch"; version="0.3.0"; sha256="09g50szxbgc7x2py647lzwmljspks7s6xbbjplbzbpkdc2z4pndh"; depends=[assertthat data_table futile_logger httr jsonlite purrr stringr uuid]; }; @@ -12338,32 +12887,33 @@ in with self; { uqr = derive2 { name="uqr"; version="1.0.0"; sha256="0f7isjfb5almp1zypxzw3lfkygkcixmg0xdsw0zznf61r6qhbqyr"; depends=[gtools Hmisc]; }; urca = derive2 { name="urca"; version="1.3-0"; sha256="1akaqwf3fvvvx4sgfn641fd4sj51s0701pvfl6s5hnz2k0iwh732"; depends=[nlme]; }; urlshorteneR = derive2 { name="urlshorteneR"; version="0.9.2"; sha256="1y5n1rn2c7yj5ncxfnsrj9lvaam2j3vvx8ld1vqyjay1r8flzifd"; depends=[httr jsonlite stringr]; }; - urltools = derive2 { name="urltools"; version="1.7.0"; sha256="0kxv54j4rf8jwyfv3z3plyb9vycwi0m1jv7z2nxnm3729p72y9xl"; depends=[Rcpp triebeard]; }; + urltools = derive2 { name="urltools"; version="1.7.1"; sha256="01h3fwk5mzicy2isvdla9r0zxrxhaf902xx4dg3f16a1l4fgi1a4"; depends=[Rcpp triebeard]; }; uroot = derive2 { name="uroot"; version="2.0-9"; sha256="0nxc8d4v9v5z3wbnj325iq2yrh0mipqgg2rn8pp2jyyq9vb1cxlv"; depends=[]; }; usdm = derive2 { name="usdm"; version="1.1-18"; sha256="1sis47fri2lrbx2ll5ps7bvycjqhncnia800izf11szgayim5lrv"; depends=[raster sp]; }; usedist = derive2 { name="usedist"; version="0.1.0"; sha256="17mldp0888ig2xc8cp1nhldj5g3srwmbx3mfcnzz21n1fz31jkmg"; depends=[]; }; - useful = derive2 { name="useful"; version="1.2.5"; sha256="05198zzlvzmmsic3g6nlxlwivpaszkzx61ximw0v4i4sahblxmp7"; depends=[assertthat dplyr ggplot2 magrittr Matrix plyr purrr scales]; }; - userfriendlyscience = derive2 { name="userfriendlyscience"; version="0.7.1"; sha256="1lkxzd5j51q57m5fqv21y6m37fgjwzjh0hhf940czhlwkk1idyld"; depends=[BiasedUrn car data_tree DiagrammeR digest diptest fBasics GGally ggplot2 ggrepel ggridges GPArotation gridExtra gtable knitr lavaan lme4 MASS MBESS minpack_lm pander plyr psych pwr RColorBrewer rio scales SCRT SuppDists viridis XML xtable]; }; - usethis = derive2 { name="usethis"; version="1.3.0"; sha256="0r61pf8qisjvrshm6jpcb76ck1v79s7lg9zwdgad4fasyyrzrcx2"; depends=[backports clipr clisymbols crayon curl desc gh git2r httr rematch2 rmarkdown rprojroot rstudioapi styler whisker]; }; + useful = derive2 { name="useful"; version="1.2.6"; sha256="0n50v1q75k518sq23id14jphwla35q4sasahrnrnllwrachl67v1"; depends=[assertthat dplyr ggplot2 magrittr Matrix plyr purrr scales]; }; + userfriendlyscience = derive2 { name="userfriendlyscience"; version="0.7.2"; sha256="17arxxha8qr876nrf9szpymgamxlvacj3lfbmpiv973kyi3hr7m4"; depends=[BiasedUrn car data_tree DiagrammeR digest diptest GGally ggplot2 ggrepel ggridges GPArotation gridExtra gtable knitr lavaan lme4 MASS MBESS minpack_lm pander plyr psych pwr RColorBrewer rio scales SCRT SuppDists ufs viridis XML xtable]; }; + usethis = derive2 { name="usethis"; version="1.4.0"; sha256="1gadckx3sxz9gxvpkprj9x7zcgg2nz5m4q0vi76ya9li1v03rwwn"; depends=[clipr clisymbols crayon curl desc fs gh git2r glue rlang rprojroot rstudioapi whisker]; }; usfertilizer = derive2 { name="usfertilizer"; version="0.1.5"; sha256="05zjn39hqjjzzp4v4b1zbqq59205s7k0kikms951h57kbyvjz6vk"; depends=[tidyverse]; }; uskewFactors = derive2 { name="uskewFactors"; version="2.0"; sha256="0ndi5987ak8sa7krgiglsibfg0k7z9j8fg47hg1m8ar0sq4r1yj6"; depends=[MASS MCMCpack mvtnorm tmvtnorm]; }; usl = derive2 { name="usl"; version="1.8.0"; sha256="04w7p9i08a51smgg11kh4hablic5rjmr5hndrnlg49j5h20i7w1v"; depends=[nlsr]; }; - usmap = derive2 { name="usmap"; version="0.3.0"; sha256="0zf3frhdg08fa5m25gln5b7xpbyjr0sbybyih0yd5hgvw0fnk4dm"; depends=[]; }; + usmap = derive2 { name="usmap"; version="0.4.0"; sha256="1sslvh2wbc52dnc9sy8m312amykcl5bvqhws1lvma5d21jn3scmh"; depends=[]; }; ustyc = derive2 { name="ustyc"; version="1.0.0"; sha256="1267bng2dz3229cbbq47w22i2yq2ydpw26ngqa1nbi3ma6hwqsv4"; depends=[plyr XML]; }; utf8 = derive2 { name="utf8"; version="1.1.4"; sha256="0m0ywg8k3blfiahxvh1i4zn9dksrlc937d2lbza5fc38zjnrrnpn"; depends=[]; }; utf8latex = derive2 { name="utf8latex"; version="1.0.4"; sha256="12isrl056h7y7nr7wk52dnvf3frcp66qqy7si869ark2aj81f959"; depends=[]; }; - utility = derive2 { name="utility"; version="1.4.2"; sha256="0q08yc0sxbcjhsr0nkgc2pyxkd93zwlbf0jyq21cf535mj4036gq"; depends=[]; }; + utility = derive2 { name="utility"; version="1.4.3"; sha256="12g2y9xzzi2sl3ya3va1p7nc7hrjhr4arsz06f8xlxw5n8kvdxag"; depends=[]; }; utilsIPEA = derive2 { name="utilsIPEA"; version="0.0.6"; sha256="07avc0j6qkzqmznbydn0zdg743g7g7kn2bcx5n03m3wg0fqyggr7"; depends=[data_table dplyr RCurl stringdist stringr]; }; utiml = derive2 { name="utiml"; version="0.1.4"; sha256="1z93a7ldgkab6hsa9a0hzyhxsbac45sgqn7fy2jh615d2kw7pqr1"; depends=[mldr]; }; uuid = derive2 { name="uuid"; version="0.1-2"; sha256="1gmisd630fc8ybg845hbg13wmm3pk3npaamrh5wqbc1nqd6p0wfx"; depends=[]; }; + uwIntroStats = derive2 { name="uwIntroStats"; version="0.0.7"; sha256="0lihcjd79sqnw64bd2d4p02rl7fmzpyykrdi7b5dsnnwjhr0ks6r"; depends=[Exact geepack plyr sandwich survival]; }; vMask = derive2 { name="vMask"; version="1.0"; sha256="14zfmgidlvlmm9anjcz3wvz4crc24ysq7jj1j1078fp7px5vvr8z"; depends=[]; }; vaersNDvax = derive2 { name="vaersNDvax"; version="1.0.4"; sha256="0hvw7vbxs87c9xkdv3617fkjwz2dbawscbd7dgaixhdhcr3k823a"; depends=[]; }; - vaersvax = derive2 { name="vaersvax"; version="1.0.4"; sha256="15znkwbhr624qgwlcrdhaxpdfl85ym845mr2sy8b016d3ngz7n94"; depends=[]; }; - vagalumeR = derive2 { name="vagalumeR"; version="0.1.1"; sha256="1l1p63yhwqvkh8kgqii9n96vdm86jfc64nrinjp5l7jhx99sn013"; depends=[httr jsonlite plyr stringr]; }; + vaersvax = derive2 { name="vaersvax"; version="1.0.5"; sha256="0bfbpdjnykvb9r0p28bz8lrqxksy4jvwnd28y6gdlprpisiipiic"; depends=[]; }; + vagalumeR = derive2 { name="vagalumeR"; version="0.1.3"; sha256="11f3jk5arpfbjdh1a84iwdr8hn3lq3g03n457lmlhkvl49vh5fq9"; depends=[httr jsonlite plyr stringr]; }; valaddin = derive2 { name="valaddin"; version="0.1.2"; sha256="0j1c3g9gn2j0manz3jjh58cnl7b1rfwm9494xqrfqpia8948p9vq"; depends=[lazyeval purrr]; }; valection = derive2 { name="valection"; version="1.0.0"; sha256="0104zcg3cw57ksgmb321hnyv095mn3frxci9vikj1smwarpnrpzc"; depends=[testthat]; }; validann = derive2 { name="validann"; version="1.2.1"; sha256="00c0hkjiv8n7mksx6sknb4xkkivxr1ml31k697csv4imwrk09dy5"; depends=[moments]; }; - validate = derive2 { name="validate"; version="0.2.5"; sha256="069r6a0l719napmrf37rwi2dvm4ql5ip3g7kba3s96b1qamh8afi"; depends=[settings yaml]; }; + validate = derive2 { name="validate"; version="0.2.6"; sha256="0aadfqk02c3qjzyn0n7g62b5dv1mhyic76xprfa2cdy3sg8vp8jd"; depends=[settings yaml]; }; validateRS = derive2 { name="validateRS"; version="1.0.0"; sha256="1ivw9ddr6z2wrsqvhbn87p5pikhkxlz8p45pb5nq13dvs359vkww"; depends=[data_table reshape2 triangle truncnorm]; }; validatejsonr = derive2 { name="validatejsonr"; version="1.0.4"; sha256="1n8jf7j3hvz47z1x3gqz5yj5wxfjzz0zgzkgckdvy1nbsqf7w3cr"; depends=[Rcpp]; }; validatetools = derive2 { name="validatetools"; version="0.4.3"; sha256="1v6mmk3iq5nzzjkkj1spiqfmqq2133xg2qyy3y8h4pwwfynp4v7c"; depends=[lpSolveAPI validate]; }; @@ -12371,46 +12921,51 @@ in with self; { valottery = derive2 { name="valottery"; version="0.0.1"; sha256="0rlv8agm9ng4jcb9ixqifh7kjczvkx7047brq8yf9kg7rb8mzgpz"; depends=[]; }; valr = derive2 { name="valr"; version="0.4.1"; sha256="0w9hgcyvmny2z1k2phnid60y8qvwbp47dy7q85ppd3j1cxyik5id"; depends=[BH bindrcpp broom dplyr ggplot2 plogr Rcpp readr rlang stringr tibble]; }; valuer = derive2 { name="valuer"; version="1.1.2"; sha256="0mbwzsvy34ppngyxdzpd9w1r4f00cik4maqab9kpiflrrv9xdp78"; depends=[ggplot2 orthopolynom R6 Rcpp RcppEigen timeDate yuima]; }; + vamc = derive2 { name="vamc"; version="0.1.0"; sha256="1rcyj2zsx33rxmhw7p1i45cm6z6380df0bayxlyizi7vh43ggy6p"; depends=[Rdpack]; }; vanddraabe = derive2 { name="vanddraabe"; version="1.0.0"; sha256="0hnfkwrrk50a5rica3lk2d52qi77xya3aspf13g0zygbyvv7ls72"; depends=[bio3d cowplot fastcluster ggplot2 openxlsx reshape2 scales]; }; + vanquish = derive2 { name="vanquish"; version="1.0.0"; sha256="01di1j36npl7vnyhgsagvyf6j8bxcw867dwf9dgi7l1328s7lf0l"; depends=[changepoint e1071 ggplot2 VGAM]; }; + vapour = derive2 { name="vapour"; version="0.1.0"; sha256="0skayxfwr9dqdr0mxj7h0gz08niib9mgv5vgl621fnzw481282fn"; depends=[Rcpp]; }; + varImp = derive2 { name="varImp"; version="0.2"; sha256="1jc6aadcqqrmn5wsh2spq21nc20jpfdh9rspzsk99aymnv46sdyv"; depends=[measures party]; }; varSel = derive2 { name="varSel"; version="0.1"; sha256="0ddj3swfxzchs75kfi6h25h3c33hpapnd5kcwcijnqhlh902b1r0"; depends=[]; }; varSelRF = derive2 { name="varSelRF"; version="0.7-8"; sha256="0h49rl1j13yfh97rsfsyh9s2c4wajny4rzms2qw77d0cavxqg53i"; depends=[randomForest]; }; varband = derive2 { name="varband"; version="0.9.0"; sha256="16z66rx7xq5zan8pnw100c9r5syw1ml4hgzi9mch52aia23v21p9"; depends=[Rcpp RcppArmadillo]; }; + varbin = derive2 { name="varbin"; version="0.2.1"; sha256="0gcynwc0vx7qlp3z0pcc4i7mjlnxkwy8ydxz2wr244fw32qgp4kq"; depends=[rpart]; }; varbvs = derive2 { name="varbvs"; version="2.4-0"; sha256="0f6c9acrir8c8m8mg928azlp31yh49faz5s2g7cbgf5f1pxi07nl"; depends=[lattice latticeExtra Matrix Rcpp]; }; vardiag = derive2 { name="vardiag"; version="0.2-1"; sha256="07i0wv84sw035bpjil3cfw69fdgbcf2j8wq4k22narkrz83iyi2z"; depends=[]; }; - vardpoor = derive2 { name="vardpoor"; version="0.10.0"; sha256="0v1l6rw8in0nr1a7g1mgfimjxjzjww174y8vxvmgirlifnnjxkc8"; depends=[data_table foreach laeken MASS plyr stringr surveyplanning]; }; + vardpoor = derive2 { name="vardpoor"; version="0.12.0"; sha256="1a6s2zip5lks4yfmpdiplqzfx97xsfyhr61yizvmm0yrnwr1a4g9"; depends=[data_table foreach ggplot2 laeken MASS plyr pracma stringr surveyplanning]; }; varhandle = derive2 { name="varhandle"; version="2.0.3"; sha256="11yisjgqc8fq0sj1kzgp51i926cs4yqkpfmbis5ak786wqalc6na"; depends=[]; }; - variables = derive2 { name="variables"; version="1.0-0"; sha256="0i1nmrbps1snyzdwlki7sfxf2vpqghd9ap8pmy235d5r399jmpkb"; depends=[]; }; + variables = derive2 { name="variables"; version="1.0-1"; sha256="05bqhkzava24z7dqg79vf9144d226rr5mby6ry32lqyx7w0gql9x"; depends=[]; }; varian = derive2 { name="varian"; version="0.2.2"; sha256="0jyw46qx2w19h02mrwv3w3n8qc1n4b3ckm38qly1y4a4w9ib6c2i"; depends=[Formula ggplot2 gridExtra MASS rstan]; }; variosig = derive2 { name="variosig"; version="0.1"; sha256="191d4f52z686s8xbx7aw9c3qjp77iri43l52n8nxjgfjl877x5m4"; depends=[geoR gstat sp]; }; varjmcm = derive2 { name="varjmcm"; version="0.1.0"; sha256="02l0d896faakh9pdq2rzl2psmrj7l2pvacz7nk3r6552glsk7h18"; depends=[expm jmcm MASS Matrix]; }; varrank = derive2 { name="varrank"; version="0.1"; sha256="1ynpnzfvwbwfpcv7rqlkvxmmafnjgdssr5l42rr3bklm9j1z71vm"; depends=[FNN]; }; - vars = derive2 { name="vars"; version="1.5-2"; sha256="1q45z5b07ww4nafrvjl48z0w1zpck3cd8fssgwgh4pw84id3dyjh"; depends=[lmtest MASS sandwich strucchange urca]; }; + vars = derive2 { name="vars"; version="1.5-3"; sha256="0zc6v827ll19n088n31afgjf65zqwvyzmmj4q3ab1xhqzxfsgbw6"; depends=[lmtest MASS sandwich strucchange urca]; }; vbdm = derive2 { name="vbdm"; version="0.0.4"; sha256="1rbff0whhbfcf6q5wpr3ws1n4n2kcr79yifcni12vxg69a3v6dd3"; depends=[]; }; vbsr = derive2 { name="vbsr"; version="0.0.5"; sha256="1avskbxxyinjjdga4rnghcfvd4sypv4m39ysfaij5avvmi89bx3b"; depends=[]; }; vcd = derive2 { name="vcd"; version="1.4-4"; sha256="1lp99h0wvsc61l1dgcqjxdrcgpgw88ak430cdsv43kmm43qssqd5"; depends=[colorspace lmtest MASS]; }; vcdExtra = derive2 { name="vcdExtra"; version="0.7-1"; sha256="163x9hhvhgdmrqbcig7b120lk63svy0y652scbrcb11f85zrgb0c"; depends=[ca gnm MASS vcd]; }; vcfR = derive2 { name="vcfR"; version="1.8.0"; sha256="1684lamsivwaqzvmwzhrrziwczkaqn3mhbdr86zbjdhr1jcgkz2z"; depends=[ape dplyr magrittr memuse pinfsc50 Rcpp stringr tibble vegan viridisLite]; }; vcov = derive2 { name="vcov"; version="0.0.1"; sha256="1w89mr8dk6436bxap28rszajgm9k7sjfqsr1i4p68dlhw8zk4yq1"; depends=[]; }; - vcr = derive2 { name="vcr"; version="0.1.0"; sha256="1f0hjfip7k9gd7lbaqk97idan2qfns7yiw6rsxp8q7szmjyhb6ga"; depends=[base64enc crul lazyeval R6 urltools webmockr yaml]; }; + vcr = derive2 { name="vcr"; version="0.2.0"; sha256="1zr94hxch8k8pcgpm43fip8wrlqswb0pjv0py66rpf9nn08nwjvy"; depends=[base64enc crul httr lazyeval R6 urltools webmockr yaml]; }; vcrpart = derive2 { name="vcrpart"; version="1.0-2"; sha256="1xfvsxgyf39d2qxnm40nzkqp7q12y8nbpn9h154n876zxxfs7gh1"; depends=[formula_tools nlme numDeriv partykit rpart sandwich strucchange ucminf zoo]; }; vdg = derive2 { name="vdg"; version="1.2.0"; sha256="1hi5d14nh9q784sbdk018awrawh9f1aix0wl26x7n0xb4707rcmy"; depends=[ggplot2 gridExtra proxy quantreg]; }; vdiffr = derive2 { name="vdiffr"; version="0.2.3"; sha256="0rsznvbymlwdjl9qdll98x8cqkf8rdi20c5sw4w547sfxr664yl0"; depends=[devtools fontquiver gdtools glue htmlwidgets purrr R6 Rcpp rlang shiny svglite testthat xml2]; }; - vdmR = derive2 { name="vdmR"; version="0.2.5"; sha256="1v96khvg3k33kg3aavanl8g05n5mjkbqsbf8c4lya73f3rs4sfgb"; depends=[broom dplyr GGally ggplot2 gridSVG maptools plyr Rdpack rgdal rgeos rjson Rook sp]; }; + vdmR = derive2 { name="vdmR"; version="0.2.6"; sha256="15d3yrwiqs7cfyzl6v5vqgi33arx9lxjbqpif9zzfb56j0x1xsk5"; depends=[broom dplyr GGally ggplot2 gridSVG maptools plyr Rdpack rgdal rgeos rjson Rook sp]; }; vec2dtransf = derive2 { name="vec2dtransf"; version="1.1"; sha256="029xynay9f9rn0syphh2rhd3szv50ib4r0h0xfhhvbbb37h5dc9s"; depends=[sp]; }; veccompare = derive2 { name="veccompare"; version="0.1.0"; sha256="03nyyxvhhwfxxg5w6qflk7q234ipbhj9fd4abcp50sxz3diabch1"; depends=[corrplot gtools pander purrr qgraph reshape2 VennDiagram]; }; vecsets = derive2 { name="vecsets"; version="1.2.1"; sha256="086af6swjpbkd140yvb76affy5gn4p9xm41m3akm8axc3qk0hybg"; depends=[]; }; vegalite = derive2 { name="vegalite"; version="0.6.1"; sha256="0dlzhvrg3nj6knyycdgg3d1vzq3dn9vxb34fjin9hzilszqmarbk"; depends=[base64 clipr digest htmltools htmlwidgets jsonlite magrittr webshot]; }; - vegan = derive2 { name="vegan"; version="2.5-2"; sha256="13pyqvlpz64qibi8k5d109v7q09j06mbv6ndix3n4cn21mjx391c"; depends=[cluster lattice MASS mgcv permute]; }; - vegan3d = derive2 { name="vegan3d"; version="1.1-1"; sha256="1jd9m2immkhgb1zr39gsgl746y7qpi5fhj8awmqq5lyr5j6jp6jh"; depends=[cluster rgl scatterplot3d vegan]; }; + vegan = derive2 { name="vegan"; version="2.5-3"; sha256="023xznh0iy0496icpchadmp7a3rk3nj9s48fvwlvp3dssw58yp3c"; depends=[cluster lattice MASS mgcv permute]; }; + vegan3d = derive2 { name="vegan3d"; version="1.1-2"; sha256="01yyhrapdvs6rr5hw1ij4jnpz7mq005s35pn96snpy8ngn6ir386"; depends=[cluster rgl scatterplot3d vegan]; }; vegclust = derive2 { name="vegclust"; version="1.7.4"; sha256="1fz3p5jpqy99r601dj9fahgv32vw0v54jlrq48wn81rzg2wwfmk7"; depends=[Kendall Rcpp sp vegan]; }; - vegdata = derive2 { name="vegdata"; version="0.9.1"; sha256="0w4dk7qcl89w04qgnlna5lk5hxnyrvwmgjjxmnvb6r5dspq7qyad"; depends=[foreign httr jsonlite XML]; }; + vegdata = derive2 { name="vegdata"; version="0.9.5"; sha256="145frmlsdb7m5z8qa03js4061pqmgvy3gykxkpiv1wv2wnfzyvnr"; depends=[foreign XML]; }; vegetarian = derive2 { name="vegetarian"; version="1.2"; sha256="15ys1m8p3067dfsjwz6ds837n6rqd19my23yj8vw78xli3qmn445"; depends=[]; }; vegtable = derive2 { name="vegtable"; version="0.1.3"; sha256="1pjbqhc09bmyjxx21z01dysbvwbx7v0mxm9xbcmfxdmr10adhian"; depends=[foreign plotKML qdapRegex sp stringi taxlist vegdata]; }; - vein = derive2 { name="vein"; version="0.3.35"; sha256="0jmsr7vw2p7r6z3s1kqkrnkd5f0w6mjzv2ln3s446c1z3bmvv5zv"; depends=[data_table eixport sf sp units]; }; + vein = derive2 { name="vein"; version="0.5.2"; sha256="1iwmh8kd4sa4bby9vycsg6wby63yri3vj310q3kvkd8b7k7z2vlw"; depends=[data_table eixport sf sp units]; }; velociraptr = derive2 { name="velociraptr"; version="1.0"; sha256="1n7q08i37qbbh5cjq6jb4gmpzzip3wx2wx8xx5wpkln8n3nyiqki"; depends=[RCurl rgdal]; }; velox = derive2 { name="velox"; version="0.2.0"; sha256="1jrarfsfflvpc0dqh5gnw92fk8zic222n7pr7hd0lhr5d389k6d0"; depends=[BH raster Rcpp rgdal rgeos sf sp]; }; vembedr = derive2 { name="vembedr"; version="0.1.3"; sha256="0zg6j0g9l7j36ifwabhxrin5z0dics66bqkc7x6rqijmizk1xpba"; depends=[htmltools httr magrittr stringr]; }; - venn = derive2 { name="venn"; version="1.6"; sha256="0ipfysb9kjq07rvf6szy1cci4waw905bavk9bs60aii5858k9rcs"; depends=[]; }; + venn = derive2 { name="venn"; version="1.7"; sha256="0lll5bcwx64di4m0k56f00vsfaas2l2mkcbblniq302v0g12v8cj"; depends=[]; }; vennLasso = derive2 { name="vennLasso"; version="0.1.2"; sha256="1lma34msdl8ik0375bh4adbfgvcy0crv29gpsk7p6x75464jsp9y"; depends=[foreach igraph MASS Matrix Rcpp RcppEigen RcppNumerical survival VennDiagram visNetwork]; }; venneuler = derive2 { name="venneuler"; version="1.1-0"; sha256="10fviqv9vr7zkmqm6iy2l9bjxglf2ljb7sx423vi4s9vffcxjp17"; depends=[rJava]; }; vennplot = derive2 { name="vennplot"; version="1.0"; sha256="0x59awa1zsjwk5qb1jzv6d2mn2fm4aq1lq8zlbnf1da0h4837yab"; depends=[Rcpp rgl stringr]; }; @@ -12419,29 +12974,29 @@ in with self; { vertexenum = derive2 { name="vertexenum"; version="1.0.2"; sha256="16ywz3z1kzhb3knhhi2i5igm3djdaaxyyrw69wkc5saa7ayhdb4y"; depends=[numbers]; }; vesselr = derive2 { name="vesselr"; version="0.2.1"; sha256="1wzprnpiv04gxhqgki36gp1a0xj9l3mchllphwkfsdja4axq3prk"; depends=[oro_nifti pbapply pbmcapply]; }; vetools = derive2 { name="vetools"; version="1.3-28"; sha256="1470xgqdq9n5kj86gdfds15k3vqidk3h99zi3g76hhyfl8gyl1c0"; depends=[lubridate maptools plyr scales sp stringr tis xts]; }; - vetr = derive2 { name="vetr"; version="0.2.5"; sha256="164zs1bxhkjzicip95lhyb2yi4hgg08zm6i18z6g4bjgn1ban1id"; depends=[]; }; + vetr = derive2 { name="vetr"; version="0.2.6"; sha256="02sa0l4dh0n066y0ls377dh6q4fdhlx2jj80gk5c5x9l5ms649xk"; depends=[]; }; vfcp = derive2 { name="vfcp"; version="1.4.0"; sha256="0zj1ihqdx5x1695al1xyi8k001yw8x7gdss72myxlnh7b4flnp9m"; depends=[copula extraDistr stringr]; }; vhica = derive2 { name="vhica"; version="0.2.4"; sha256="0km49lrzn9rm3wxadwxc290dvx3bsblbmna7f9lnkq6g1z5jdqwg"; depends=[]; }; vietnamcode = derive2 { name="vietnamcode"; version="0.1.1"; sha256="0vc0c1fg30afar2dkch5h27b8jbglcd9ja6d5hcypnibqz4c68vz"; depends=[]; }; - vimp = derive2 { name="vimp"; version="1.0.0"; sha256="0q92zgs52nxrxswnvascbpfvg51hvy08cwjy2vjjvzjydicsfnxh"; depends=[SuperLearner]; }; - vinereg = derive2 { name="vinereg"; version="0.3.0"; sha256="05vd9ilnx9cswsa21bnw6p5q44yyc7adm4xh966dnsdrsdj6dd7s"; depends=[cctools furrr future kde1d rvinecopulib]; }; + vimp = derive2 { name="vimp"; version="1.1.4"; sha256="146z6xismk97613cdiz508hn0mgg0w0rqnjb9as66sq57kqgn5yn"; depends=[SuperLearner]; }; + vinereg = derive2 { name="vinereg"; version="0.5.0"; sha256="17qni21jaizmfzl975xd39ahlc5flfnmy6xy7n9adfv346f3zwp0"; depends=[cctools furrr future kde1d rvinecopulib]; }; vines = derive2 { name="vines"; version="1.1.5"; sha256="057d2fdh03cq9kh4vz94arqscahmz14xbr2g59l0vn205lnyilf1"; depends=[ADGofTest copula cubature TSP]; }; violinmplot = derive2 { name="violinmplot"; version="0.2.1"; sha256="1j3hb03y988xa704kp25v1z1pmpxw5k1502zfqjaf8cy4lr3kzsc"; depends=[lattice]; }; vioplot = derive2 { name="vioplot"; version="0.2"; sha256="16wkb26kv6qr34hv5zgqmgq6zzgysg9i78pvy2c097lr60v087v0"; depends=[sm]; }; viopoints = derive2 { name="viopoints"; version="0.2-1"; sha256="0cpbkkzm1rxch8gnvlmmzy8g521f5ang3nhlcnin419gha0w6avf"; depends=[]; }; - vip = derive2 { name="vip"; version="0.1.0"; sha256="1blyyy17f4gxhbw7jwwf0xrq4ha142k356dfhasnvk4jqrpajcxc"; depends=[dplyr ggplot2 gridExtra magrittr pdp plyr tibble tidyr]; }; + vip = derive2 { name="vip"; version="0.1.2"; sha256="1y4v0qd7qag9jw9vazlnl3hp4813lcbhmbq60s3znhdmxnbb4irw"; depends=[ggplot2 gridExtra magrittr ModelMetrics pdp plyr tibble]; }; vipor = derive2 { name="vipor"; version="0.4.5"; sha256="112gc0d7f8iavgf56pnzfxb7hy75yhd0zlyjzshdcfbnqcd2a6bx"; depends=[]; }; viridis = derive2 { name="viridis"; version="0.5.1"; sha256="060rf1jn29dq53y3nhb0hykvcap6rqsk04rq544ypiiqb18ngwnx"; depends=[ggplot2 gridExtra viridisLite]; }; viridisLite = derive2 { name="viridisLite"; version="0.3.0"; sha256="1by2l05f0yabwvv64lhnv7bbhx0w683s3wr9j2xda920ghpa23kq"; depends=[]; }; - virtualspecies = derive2 { name="virtualspecies"; version="1.4-2"; sha256="19qw8vqf08x6fgm8w159qabpgr2wv2cxishpj6888ihcaa9ykp8f"; depends=[ade4 dismo raster rworldmap]; }; + virtualspecies = derive2 { name="virtualspecies"; version="1.4-4"; sha256="04byc39id5vn22h06b0yqb08bxnpsfdgig4v5r8hjv240c0p8q91"; depends=[ade4 raster rworldmap sp]; }; virustotal = derive2 { name="virustotal"; version="0.2.1"; sha256="0lky75al8zcvmfgx7a2s3bij8ya4avdsnv046lk7564zfd8rbymw"; depends=[httr plyr]; }; visNetwork = derive2 { name="visNetwork"; version="2.0.4"; sha256="05gdsma70zvkgly9qscbwy98x8zrqgsk93czb37jp0as365l00q5"; depends=[htmltools htmlwidgets jsonlite magrittr]; }; visdat = derive2 { name="visdat"; version="0.5.1"; sha256="1vnfwldzq5ddqk8prj4cg0dmkbjhpchdkb6v8kicd876dv8vxy2q"; depends=[dplyr ggplot2 magrittr plotly purrr readr rlang tibble tidyr]; }; visreg = derive2 { name="visreg"; version="2.5-0"; sha256="0n19k6rsmpqga6r8lyhjviqs3nw881dhr211621m2cl7knqhhi4y"; depends=[lattice]; }; - vistime = derive2 { name="vistime"; version="0.5.0"; sha256="1h7dm66m0qx3hmfx1hlv5na65swdhdykyg1fsqzgnjl6p98cg81j"; depends=[plotly RColorBrewer]; }; + vistime = derive2 { name="vistime"; version="0.6.0"; sha256="1ah3zwz2ikzd8y2rbff65mdd9lp4yd328mb2971afr2xdd9gvvqd"; depends=[plotly RColorBrewer]; }; visualFields = derive2 { name="visualFields"; version="0.5.4"; sha256="19fb1qq4kyhln21dmf7wm6kqf7g94ls7nsaspl2q9d3rlmcgz5h3"; depends=[deldir flip gtools Hmisc matrixStats spatstat]; }; visualize = derive2 { name="visualize"; version="4.3.0"; sha256="1s49sx828f25d4n93mn28xdbc81zflk2sr3h8ffs2mkjr888qd8y"; depends=[]; }; - visvow = derive2 { name="visvow"; version="0.1.0"; sha256="0nb849m6dqfanqlaqcargw0rlf4ch9v09zmf0zqmxkwcil0w0dka"; depends=[Cairo DT ggplot2 plot3D plyr pracma psych Rdpack readxl shiny shinyBS svglite WriteXLS]; }; + visvow = derive2 { name="visvow"; version="0.2.0"; sha256="1518vhvhx64k18sf003j5bafhdpkx4m8hahvksgcp2a1n3660l1i"; depends=[Cairo DT ggdendro ggplot2 ggrepel MASS plot3D plyr pracma psych Rdpack readxl Rtsne shiny shinyBS svglite WriteXLS]; }; vita = derive2 { name="vita"; version="1.0.0"; sha256="114p2lzcr8rn68f0z4kmjdnragqlmi18axda9ma4sbqh8mrmjs9v"; depends=[randomForest Rcpp]; }; vitality = derive2 { name="vitality"; version="1.3"; sha256="17micfmlksnw167vavvhlk431fm20k74y5ggs47pgz5fwpm854zp"; depends=[]; }; vkR = derive2 { name="vkR"; version="0.1"; sha256="0rb66am3y009wli8ykl58i02kzm6cdqz5v5d4vvzlbngz8crdkyy"; depends=[httr jsonlite XML]; }; @@ -12453,13 +13008,13 @@ in with self; { vortexRdata = derive2 { name="vortexRdata"; version="1.0.3"; sha256="1pq910xaqk6d5amg8hj7xagb5wn2ahfrmqairf3vhwqx55lhjbg1"; depends=[]; }; vosonSML = derive2 { name="vosonSML"; version="0.23.4"; sha256="0y2jyrkld02ksn2ipkkxzc724dhbqbja120gg7sm67v6x444pma7"; depends=[bitops data_table Hmisc httpuv httr igraph instaR plyr RCurl Rfacebook rjson stringr tm twitteR]; }; vote = derive2 { name="vote"; version="1.1-0"; sha256="1kxbv4062g4x9vn4gh74c6zwdshysw5n7vx9qljhq2wrdnqzjpyg"; depends=[formattable knitr]; }; - voteogram = derive2 { name="voteogram"; version="0.2.0"; sha256="0m4j7iz7mc6z536vk0kmqfd8ank87ingv5vnjl7mn62r53c5fbsf"; depends=[dplyr ggplot2 jsonlite scales]; }; + voteogram = derive2 { name="voteogram"; version="0.3.1"; sha256="12xv0c3g4vr23c8adkk8z7m7sx31w5mjvdg9h4qbvaimb99p2r7z"; depends=[dplyr ggplot2 jsonlite scales]; }; votesys = derive2 { name="votesys"; version="0.1.1"; sha256="1z7cx3rj3bfrkb6jkmf1m1wad5ff46zrab5vhk69wf3jbwd9h920"; depends=[data_table gtools Matrix]; }; vottrans = derive2 { name="vottrans"; version="1.0"; sha256="1fp7jrw072ws39bqsg88bm2qndcv68aa2vdqwgnza58p1dfq3x9f"; depends=[quadprog]; }; vowels = derive2 { name="vowels"; version="1.2-2"; sha256="0xhfn3avx9h6kg3jwd47n2x7w8q8c9h13wsxd74hhbbn2gkjrs84"; depends=[]; }; vows = derive2 { name="vows"; version="0.5"; sha256="06akjdbab9v7r47di7syvcm7gf4k81djizg8maszs5l1ksyhmv6b"; depends=[fda gamm4 mgcv oro_nifti RLRsim shape stringr]; }; voxel = derive2 { name="voxel"; version="1.3.5"; sha256="1xlym8xc22dq67h0lylrr16z7b4zdidpgrkvbs7n9fnkh6vijw2j"; depends=[gamm4 ggplot2 lmerTest mgcv oro_nifti purrr]; }; - vpc = derive2 { name="vpc"; version="1.0.1"; sha256="0zxiakls7wi0278f6v74xdcaw500am8gfs8lp7cciaxnw2clvsbv"; depends=[classInt dplyr ggplot2 MASS readr reshape2 survival]; }; + vpc = derive2 { name="vpc"; version="1.1.0"; sha256="15ws6zfizyryn3bvjvs053n81k2g9k641dqmwvgy152bsg7w7fwx"; depends=[classInt dplyr ggplot2 MASS readr reshape2 survival]; }; vqtl = derive2 { name="vqtl"; version="2.0.4"; sha256="1jp7h2afnfgn8i65qg64lwbjw56s37w8fgwfajcgxn2mwb5z0jcb"; depends=[dglm doParallel dplyr evd foreach ggplot2 gtools iterators knitr lazyeval purrr qtl stringr testthat tidyr]; }; vrcp = derive2 { name="vrcp"; version="0.1.1"; sha256="1wrch1dqy752gkj24h1dgi2x3kf1797xj4pf1s9mszf3x3ic905d"; depends=[ggplot2]; }; vrmlgen = derive2 { name="vrmlgen"; version="1.4.9"; sha256="0lifhhf41yml4k83wpkssl14jgn8jaw1lcknwbci1sd8s1c4478l"; depends=[]; }; @@ -12467,7 +13022,7 @@ in with self; { vscc = derive2 { name="vscc"; version="0.2"; sha256="1p14v8vd8kckd44g4dvzh51gdkd8jvsc4bkd2i4csx8vjiwrni5w"; depends=[mclust teigen]; }; vsgoftest = derive2 { name="vsgoftest"; version="0.3-2"; sha256="020kghcfv8h0i7fzq3p2grhhbwvqmc9ya9r7lc1kiqg1bfgljg91"; depends=[fitdistrplus Rcpp]; }; vstsr = derive2 { name="vstsr"; version="1.0.0"; sha256="0flsw5yw1vmj5x866klxmjqz5aimkvjiwl1zdciz63p9zffmb4gz"; depends=[httr jsonlite magrittr R6 RCurl xml2]; }; - vtreat = derive2 { name="vtreat"; version="1.2.2"; sha256="06r8ib4l3cyxrx8ykkvjj7ycrjsrv5d5y0lm6zj12lc9l298zj49"; depends=[wrapr]; }; + vtreat = derive2 { name="vtreat"; version="1.3.1"; sha256="00iwxfn42zanhs2bwk73731nzwzpjwb127dig91dqhdsvng9585s"; depends=[wrapr]; }; vudc = derive2 { name="vudc"; version="1.1"; sha256="0zxz6n3ixa3xjzcinky8ymqjx9w8y8z65mz8d84dl00mxzkmkz4h"; depends=[]; }; vwr = derive2 { name="vwr"; version="0.3.0"; sha256="1h790vjcdfngs1siwldvqz8jrxpkajl3266lzadfnmchfan1x7xv"; depends=[lattice latticeExtra stringdist]; }; wBoot = derive2 { name="wBoot"; version="1.0.3"; sha256="08qgkkv6jvqmxq5gvfp7jbrc3k8mxajfww7k8a3p8888aq411p7q"; depends=[boot simpleboot]; }; @@ -12476,24 +13031,25 @@ in with self; { wNNSel = derive2 { name="wNNSel"; version="0.1"; sha256="19j2yz6lvkxpmjr0vv6pjc7j1c02y0hb3gay5sy1y0xk706aggb5"; depends=[]; }; wPerm = derive2 { name="wPerm"; version="1.0.1"; sha256="0f3v0kba87wkwyii0pzvs6a8ja897aifpvwkvryl2hzxxxaml7z4"; depends=[]; }; wSVM = derive2 { name="wSVM"; version="0.1-7"; sha256="0c7rblzgagwfb8mmddkc0nd0f9rv6kapw8znpwapv3fv0j2qzq7h"; depends=[MASS quadprog]; }; - wTO = derive2 { name="wTO"; version="1.6.1"; sha256="0iw5vg3qpjgyx6n2p10a2ma9dpcm1hchvrm2brh1a0j1xmjwpsrl"; depends=[data_table igraph magrittr plyr reshape2 shiny som visNetwork]; }; + wTO = derive2 { name="wTO"; version="1.6.2"; sha256="04393rwl74m8qj89kcsnyayvhwkf9bynga33pc09spvjnpnfjj14"; depends=[data_table igraph magrittr plyr reshape2 shiny som visNetwork]; }; waccR = derive2 { name="waccR"; version="0.1.0"; sha256="092p1bibyqx1gcrch68l9ilzilg5aqf46b6iagm562292cfi074l"; depends=[dplyr lubridate magrittr rvest tibble xml2]; }; waffect = derive2 { name="waffect"; version="1.2"; sha256="0r5dvm0ggyxyv81hxdr1an658wkqkhqq2xaqzqpnh4sh4wbak35a"; depends=[Rcpp]; }; waffle = derive2 { name="waffle"; version="0.7.0"; sha256="1qjmai33p96cyavi9lgi6k30h6fj7db5sr569v9jf4kwx92c61df"; depends=[extrafont ggplot2 gridExtra gtable RColorBrewer]; }; wahc = derive2 { name="wahc"; version="1.0"; sha256="1324xhajgmxq6dxzpnkcvxdpm2m3g47drhyb2b3h227cn3aakxyg"; depends=[]; }; wakefield = derive2 { name="wakefield"; version="0.3.3"; sha256="05z9a6g1cdavalp50wss7klnlcdbv3y1jvz1v8ry1x2bziy216y2"; depends=[chron dplyr ggplot2 stringi]; }; walkalytics = derive2 { name="walkalytics"; version="0.1.0"; sha256="1kl6kwwnl67d45akna01xp389wjxsxlc84l0bcpadbipsqyb3kd1"; depends=[base64enc dplyr httr purrr sp stringr tibble]; }; - walker = derive2 { name="walker"; version="0.2.1"; sha256="1q99nny7mdh7wc3yj4dz0s2454aqyxjcsp5hpjrha14h4p3fcirf"; depends=[bayesplot BH dplyr ggplot2 KFAS Rcpp RcppArmadillo RcppEigen rstan StanHeaders]; }; + walker = derive2 { name="walker"; version="0.2.3"; sha256="0wnrqlkv6nrl2mb3pxmvv1fahx0vv4jcr86lhxhwgvjgff50idfl"; depends=[bayesplot BH dplyr ggplot2 KFAS Rcpp RcppArmadillo RcppEigen rstan StanHeaders]; }; walkr = derive2 { name="walkr"; version="0.3.4"; sha256="01278hfa9mppwqmr54826gb65pswhqbh7ai8ij6m4ncc0fk6pvvd"; depends=[ggplot2 hitandrun limSolve MASS Rcpp RcppEigen shinystan]; }; walkscoreAPI = derive2 { name="walkscoreAPI"; version="1.2"; sha256="1c2gfkl5yl3mkviah8s8zjnqk6lnzma1yilxgfxckdh5wywi39fx"; depends=[]; }; - wallace = derive2 { name="wallace"; version="1.0.5"; sha256="1c3ghc5prkw44sq93klj1cfgllsz3830y78i4b1y6r23bj2z9520"; depends=[dismo dplyr DT ENMeval leaflet leaflet_extras magrittr maptools raster RColorBrewer rgdal rgeos rmarkdown shiny shinyjs shinythemes spocc spThin testthat XML]; }; + wallace = derive2 { name="wallace"; version="1.0.6"; sha256="0pnkwdfmimnvyygbz1iz1b9fhcdi7k53wjw44kmnr2b7ln9pbcl2"; depends=[dismo dplyr DT ENMeval leaflet leaflet_extras magrittr maptools raster RColorBrewer rgdal rgeos rmarkdown shiny shinyjs shinythemes spocc spThin XML zip]; }; wally = derive2 { name="wally"; version="1.0.9"; sha256="1g6dywny8s8fpdnfvrlbzsp9d9dhxdxrm1j4dd3b9r6rpiajf964"; depends=[data_table prodlim riskRegression]; }; walmartAPI = derive2 { name="walmartAPI"; version="0.1.5"; sha256="1nng8izncj2nmmpywn1ggpzvjh8q7y3q6260qhy9kbmvrrl26spf"; depends=[dplyr glue httr magrittr purrr stringr tibble]; }; walrus = derive2 { name="walrus"; version="1.0.3"; sha256="1nk2glcvy4hyksl5ipq2mz8jy4fss90hx6cq98m3w96kzjni6jjj"; depends=[ggplot2 jmvcore R6 WRS2]; }; wand = derive2 { name="wand"; version="0.2.0"; sha256="1p2r96nyr36jv418xi4j2ldarymb4xmpis6d2iz7mq9755kb4fnh"; depends=[dplyr purrr rappdirs Rcpp stringi tibble tidyr]; }; - warbleR = derive2 { name="warbleR"; version="1.1.14"; sha256="0wr0m950y404chh8gipx1v5mvldypm0iwyiqn4ypz5143fzlhwih"; depends=[bitops dtw fftw iterators jpeg maps monitoR NatureSounds pbapply pracma RCurl rjson seewave Sim_DiffProc tuneR]; }; + warbleR = derive2 { name="warbleR"; version="1.1.15"; sha256="1vd2yvb1crzxbrbfk8iv31ir09xc646m8glfgqkgazhnj0y6l6yr"; depends=[bioacoustics bitops dtw fftw iterators jpeg maps monitoR NatureSounds pbapply pracma RCurl rjson seewave Sim_DiffProc soundgen tuneR]; }; warpMix = derive2 { name="warpMix"; version="0.1.0"; sha256="13zbl4aifhg7j5b3vpwgzgs09hr7yblz0rckmj5qh40s78j8cpfn"; depends=[fda fields lme4 MASS nlme reshape2]; }; washdata = derive2 { name="washdata"; version="0.1.2"; sha256="01cnlhymh3qg9c7fda8s6lvm4j2vklmb72dfk17sn4p0kkikf9m8"; depends=[]; }; + washeR = derive2 { name="washeR"; version="0.1.2"; sha256="0sb5sgwf7y9sd291qfj1az3x6h6gmznnnsdmqizkmv2xz9029rxz"; depends=[gplots]; }; wasim = derive2 { name="wasim"; version="1.1.2"; sha256="1zydzw7cihhdwv0474fnc4lgaq5fwrv8jinz79vkbidbgcy7i2fd"; depends=[fast MASS qualV tiger]; }; water = derive2 { name="water"; version="0.8"; sha256="0qglf922dlgi41jzz3sivq7ckmzl8axqjfg4klcgnddycmm3ha5j"; depends=[raster rgdal sp]; }; waterData = derive2 { name="waterData"; version="1.0.8"; sha256="0884agh876wf3qlbc75fbaa47x2iwvncz7r2l25qw34n8lxq1yr6"; depends=[dataRetrieval lattice latticeExtra lubridate xml2]; }; @@ -12511,33 +13067,35 @@ in with self; { wbstats = derive2 { name="wbstats"; version="0.2"; sha256="0rfc9c6892jq7y17dwp6vsn62ggnac964xndmxq3mip6k2pk8yi0"; depends=[httr jsonlite tidyr]; }; wbsts = derive2 { name="wbsts"; version="2.0"; sha256="12k68nsrrxglrm9ik53rm8160xvjlsgzi7v4wp78jhmh2slmyxw3"; depends=[mvtnorm Rcpp wmtsa]; }; wdm = derive2 { name="wdm"; version="0.1.1"; sha256="0mr901l2378dyygdhc5agx93lm46a44fs3kr3ax2wnv1cdhmc379"; depends=[Rcpp]; }; - weathercan = derive2 { name="weathercan"; version="0.2.7"; sha256="09465l1gy349vgnpasxazp3i5x82hld8k06ba6556k4r9jypx08v"; depends=[dplyr httr lubridate purrr stringi tidyr xml2]; }; + wdman = derive2 { name="wdman"; version="0.2.4"; sha256="00q9qk8qgz7fjbd9j8pxknrw8lk1ardifg8w4agyrk8r4q56b1a0"; depends=[assertthat binman semver subprocess yaml]; }; + weathercan = derive2 { name="weathercan"; version="0.2.8"; sha256="1hspjij4rhlnl3k1hidpa9sclml95q9igwf9dsy0kihlsl0g35h1"; depends=[dplyr httr lubridate purrr rlang stringi tidyr xml2]; }; weathermetrics = derive2 { name="weathermetrics"; version="1.2.2"; sha256="1hjhgsy3v8328hv4czxxz7kp68sxc10sy10f3dv5j8f6pka6qlsp"; depends=[]; }; weatherr = derive2 { name="weatherr"; version="0.1.2"; sha256="11sb5bmqccqkvlabsw4siy9n6ivsrvxavywvaffgrs3blmnygql9"; depends=[ggmap lubridate RJSONIO XML]; }; - webTRISr = derive2 { name="webTRISr"; version="0.1.0"; sha256="19xal5zg9mg25vzvkz55zm6gkd8b0y3sw3zbbrxn73a1jg8x5v0l"; depends=[dplyr httr jsonlite lubridate magrittr purrr readr stringr]; }; + webTRISr = derive2 { name="webTRISr"; version="0.1.1"; sha256="044a079fj4ryykj2n8zlfipmjyrfyfvhrqcd1wbb6r440yjkvali"; depends=[dplyr httr jsonlite lubridate magrittr purrr readr stringr]; }; webchem = derive2 { name="webchem"; version="0.4.0"; sha256="032bsfnkn7s33y42fyf8yradsh8jhms4ryjkh0r76hqnx3j00ph0"; depends=[httr jsonlite RCurl rvest stringr xml2]; }; webdriver = derive2 { name="webdriver"; version="1.0.5"; sha256="0l3nz7gf62jlkvkn5sfxfvn0prxz3ds7nlpfb1yhnmdljhbzrgzf"; depends=[base64enc callr curl debugme httr jsonlite R6 showimage withr]; }; webglobe = derive2 { name="webglobe"; version="1.0.2"; sha256="1277d6fkgrgixlhikfwf0r6z8g5b7mah905xi219qsfycxmifgn9"; depends=[geojsonio httpuv jsonlite]; }; - webmockr = derive2 { name="webmockr"; version="0.2.6"; sha256="00akqj7lw3hvwxllnn48zpq5wk70bbr4ghzilh6064jwkk365c8v"; depends=[crul curl fauxpas jsonlite lazyeval magrittr R6 urltools]; }; + webmockr = derive2 { name="webmockr"; version="0.2.8"; sha256="03744y89d1cklidd5lyqw23yaz71yyv6w8gk5qqibg2alq58gcn8"; depends=[crul curl fauxpas jsonlite lazyeval magrittr R6 urltools]; }; webp = derive2 { name="webp"; version="0.4"; sha256="0jsyjynrsrqpbg93rn48xrjclkvwmz2c2lhcfli5djny122ymh6r"; depends=[]; }; webr = derive2 { name="webr"; version="0.1.0"; sha256="0fjbk933034cgmqd41cw7q5xcvrwgylcic6lxav9jv3b2sspzw06"; depends=[ggplot2 moonBook stringr]; }; webreadr = derive2 { name="webreadr"; version="0.4.0"; sha256="0l3l5g4zj5faxqi1kqwx9lq91gbj40z2q3csrsmpal08qnwkxs90"; depends=[Rcpp readr]; }; - websearchr = derive2 { name="websearchr"; version="0.0.2"; sha256="1yf8ch86khg5syppcxs94mxgc3i5623qyhzh174nssw1wzyqb9ba"; depends=[]; }; - webshot = derive2 { name="webshot"; version="0.5.0"; sha256="07r71zzmggp4jf92x4ws4wg6v1x98vaj01lsar85bnb30n5vx8gh"; depends=[jsonlite magrittr processx withr]; }; - webuse = derive2 { name="webuse"; version="0.1.2"; sha256="0ks3pb9ir778j9x4l0s4ly2xa1jc9syddqm65wkck52q3lrarg3l"; depends=[haven]; }; + websearchr = derive2 { name="websearchr"; version="0.0.3"; sha256="1c6dwm5g5rjq0b12zrwwi5k9760jb0ph83v4j2gm8zm0x9dhiqm9"; depends=[]; }; + webshot = derive2 { name="webshot"; version="0.5.1"; sha256="08sb1xi376pfy1vwilk2d68zljsg9yiv04n2dkqz383gdhh0sxdr"; depends=[callr jsonlite magrittr]; }; + webuse = derive2 { name="webuse"; version="0.1.3"; sha256="09xvw0v991cq1ck2kfxblp5cngfh9j6swvh5xv420mvky0kshv32"; depends=[haven]; }; webutils = derive2 { name="webutils"; version="0.6"; sha256="1basl7q2m8y9nw5ksi1kdz6an9pybvsmdd4snrm7a37041xymnps"; depends=[curl jsonlite]; }; wec = derive2 { name="wec"; version="0.4-1"; sha256="10lqh43536d44d6082rpp11q1323pmjbmgrgb8v9mrk9c1ysf50w"; depends=[dplyr]; }; weco = derive2 { name="weco"; version="1.2"; sha256="1prk8hn782pd8g2rbbaj7y10vjimqs9n8i4rab6aw6fc3k759d6b"; depends=[]; }; weibullness = derive2 { name="weibullness"; version="1.18.6"; sha256="046fs6b5yb6ckddcb9vplc5478c7xprnafsj4rvzb1gmcpcrqqck"; depends=[]; }; + weibulltools = derive2 { name="weibulltools"; version="0.5.4"; sha256="0xxqcvxd489qhdais7f2xnscz8bfcsl4k1qggl35v65bn7bm7hjw"; depends=[dplyr magrittr plotly Rcpp sandwich segmented SPREDA survival]; }; weightTAPSPACK = derive2 { name="weightTAPSPACK"; version="0.1"; sha256="0kpfw477qka5qrc6sh73had38xbrwrqp1yv0dj2qiihkiyrp67ks"; depends=[HotDeckImputation mice plyr survey]; }; weightedScores = derive2 { name="weightedScores"; version="0.9.5.1"; sha256="118hzwaarcb8pk2zz83m6zzzndlpbbzb7gz87vc7zggpa998k1gr"; depends=[mvtnorm rootSolve]; }; weightr = derive2 { name="weightr"; version="1.1.2"; sha256="13wy7ygx7khbmymg2r0rr6mrl4lbapf5bnnq1rq8izl38sjk7csx"; depends=[]; }; - weights = derive2 { name="weights"; version="0.90"; sha256="0wgh2nb2y0xr20y6ig9mric34zhwpndb71ddpbrf5sjqg3hijj96"; depends=[gdata Hmisc mice]; }; + weights = derive2 { name="weights"; version="1.0"; sha256="0186bfpkhxngrshac6bpg37alp6slwhwd43inrm8hqg0vhpfgc4c"; depends=[gdata Hmisc mice]; }; weirs = derive2 { name="weirs"; version="0.25"; sha256="17a0ppi7ghikrwn39zvhg2cvhmnr3w0qi7r9lj22x65ii9nzadd7"; depends=[]; }; welchADF = derive2 { name="welchADF"; version="0.3"; sha256="0k2di5fwh5jv87mw4bjnhbk2rmhf2v2f5ksjr5dgnyhnawwxqq97"; depends=[lme4]; }; wellknown = derive2 { name="wellknown"; version="0.5.0"; sha256="1y3hi5ajqaxx3s40cx24ayfcd3c6d1ydlhsm0gg2fxgmidm6bhwy"; depends=[jsonlite V8]; }; wesanderson = derive2 { name="wesanderson"; version="0.3.6"; sha256="09mr6p2jmqdjq27cz974w5hyxgn929zp9z3inhxqmmh1582fmdi2"; depends=[]; }; - wevid = derive2 { name="wevid"; version="0.4.2"; sha256="0d771r3xrd7nwnpwnhzqaqybimjg0gaikqqagbf483x423ijfdny"; depends=[ggplot2 pROC reshape2 zoo]; }; + wevid = derive2 { name="wevid"; version="0.5.1"; sha256="1dw4ypdmhnvwv89ydjbl2jbaf6913gx966qvcbm82apvjbb624vy"; depends=[ggplot2 pROC reshape2 zoo]; }; wfe = derive2 { name="wfe"; version="1.6"; sha256="0y8f042hzlqwgsr63rl2apl7hkw9bs69a287dynvz9w078am61ch"; depends=[arm MASS Matrix]; }; wfg = derive2 { name="wfg"; version="0.1"; sha256="1r6wb8v42mpapjfhmkmghm9fq21c3s4zmdxy8nlh31nsja71c37d"; depends=[igraph]; }; wfindr = derive2 { name="wfindr"; version="0.1.0"; sha256="0m5xj50hqdjj4lpbgx1kp3my4njr0nz09hd63rf4qf1ls8r7zil9"; depends=[dplyr magrittr]; }; @@ -12546,8 +13104,9 @@ in with self; { wheatmap = derive2 { name="wheatmap"; version="0.1.0"; sha256="1c1xvzy194vw3idkwkqp9kyrfldzczj30cl15jw1bbnw87zcwdzy"; depends=[colorspace RColorBrewer]; }; whereport = derive2 { name="whereport"; version="0.1"; sha256="1gdqzr2hrnpxbwl7cfps4m3xja8wkgwfs50i2nailybympvdnxm4"; depends=[dplyr]; }; whisker = derive2 { name="whisker"; version="0.3-2"; sha256="0z4cn115gxcl086d6bnqr8afi67b6a7xqg6ivmk3l4ng1x8kcj28"; depends=[]; }; - whitening = derive2 { name="whitening"; version="1.0.0"; sha256="0vncjbrw9gafplz6r02x0j1fnrfvxq027h1pqcbdwqykjzg0zcym"; depends=[corpcor]; }; - whoami = derive2 { name="whoami"; version="1.1.2"; sha256="1wkgh8mxm2ci5ylwppbh38sx5fm5rsm06bimdpc07z35bz4825xg"; depends=[httr jsonlite]; }; + whitechapelR = derive2 { name="whitechapelR"; version="0.3.0"; sha256="0mnq5m59mw8w5g1p0h2xzlz738j397b3444km59bm5yln3j0nsbi"; depends=[igraph plyr]; }; + whitening = derive2 { name="whitening"; version="1.1.0"; sha256="19p0l2vim9nc1m381v9m3icg238n1xamvwz3v2v00sb1fan9nr9s"; depends=[corpcor]; }; + whoami = derive2 { name="whoami"; version="1.2.0"; sha256="1b1zvbvmyh979fq72qa5k83888wpfr44l0qjz0pgdlad1li0nfnc"; depends=[httr jsonlite]; }; whoapi = derive2 { name="whoapi"; version="0.1.2"; sha256="0ib0an08xsxan24q8mb5ai375njmkdc61lh4321rzgr25iqvi682"; depends=[httr]; }; wicket = derive2 { name="wicket"; version="0.4.0"; sha256="1lizzmj69bswzlk18fv2v4yxxc6dynvmkymdiafznzcyyz4a8xnf"; depends=[BH Rcpp]; }; widals = derive2 { name="widals"; version="0.5.4"; sha256="1bl59s1r4gkvq4nkf94fk7m0zvhbrszkgmig66lfxhyvk9r84fvb"; depends=[snowfall]; }; @@ -12557,10 +13116,12 @@ in with self; { wikibooks = derive2 { name="wikibooks"; version="0.2"; sha256="178lhri1b8if2j7y7l9kqgyvmkn4z0bxp5l4dmm97x3pav98c7ks"; depends=[]; }; wikilake = derive2 { name="wikilake"; version="0.4"; sha256="0pm0brzkf2k6aknwl4b3fba5ly7mhah8qfb0h94fckiaqbnpyx9v"; depends=[maps rvest selectr sp stringi stringr units WikipediR xml2]; }; wikipediatrend = derive2 { name="wikipediatrend"; version="1.1.14"; sha256="00i38py9n4l0iqkn3257a3jbiwh3hrmx1p9x6rfh9sgfcch8yyj5"; depends=[hellno httr jsonlite RColorBrewer rvest stringr xml2]; }; - wikitaxa = derive2 { name="wikitaxa"; version="0.2.0"; sha256="06ccb1ix5lsz3jgr3aq2ywq9bdnz020sa5dzlq1ayw95gdqj6icl"; depends=[crul curl data_table jsonlite tibble WikidataR xml2]; }; + wikisourcer = derive2 { name="wikisourcer"; version="0.1.1"; sha256="03n813w281y6zk0xl248jdis6jr10dgpax7lcmx8av18dipssf1d"; depends=[dplyr purrr rvest stringr urltools xml2]; }; + wikitaxa = derive2 { name="wikitaxa"; version="0.3.0"; sha256="0v681qac33dlcdlah20qf5qb9g5h917rpzv67brx1handjnapnqh"; depends=[crul curl data_table jsonlite tibble WikidataR xml2]; }; wildcard = derive2 { name="wildcard"; version="1.1.0"; sha256="0qkzab84z95g5f4fv3v4wisccgd7k9m3210pz4nvm1x8rfaqfjf1"; depends=[magrittr stringi]; }; wildlifeDI = derive2 { name="wildlifeDI"; version="0.2"; sha256="0z8zyrl3d73x2j32l6xqz5nwhygzy7c9sjfp6bql5acyfvn7ngjv"; depends=[adehabitatLT rgeos sp]; }; wildpoker = derive2 { name="wildpoker"; version="1.1"; sha256="1302ain55spz34irmq49sp9b1pvrn2nxmzmqs8m9wdk6g82h3s27"; depends=[]; }; + wilson = derive2 { name="wilson"; version="2.0.2"; sha256="0ivd3cm6swhbcg38f66505rwf8h19wcg69mf3p4f9vjif8l13q4s"; depends=[circlize colourpicker ComplexHeatmap data_table DESeq2 DT factoextra FactoMineR ggplot2 ggrepel gplots heatmaply log4r openssl plotly plyr R6 RColorBrewer reshape rintrojs rje rjson RJSONIO scales shiny shinycssloaders shinydashboard shinyjs viridis]; }; winRatioAnalysis = derive2 { name="winRatioAnalysis"; version="0.1.0"; sha256="1msvc06bfzw9clinxbvr5fdw38dff0c0xii46182nwnk5kj0libr"; depends=[data_table JM Matrix MLEcens mvtnorm nlme plyr pssm survival]; }; windex = derive2 { name="windex"; version="1.0"; sha256="0ci10x6mm5i03j05fyadxa0ic0ngpyp5nsn05p9m7v1is5jhxci0"; depends=[ape geiger scatterplot3d]; }; windfarmGA = derive2 { name="windfarmGA"; version="1.2.1"; sha256="1v4brwi92a2kchak43z0vxjq11373amh190fnmpmnpz58zbls448"; depends=[calibrate data_table doParallel dplyr foreach geoR ggplot2 googleVis gstat gtools leaflet magrittr maptools RandomFields raster RColorBrewer rgdal rgeos rgl RgoogleMaps sp spatstat]; }; @@ -12576,22 +13137,22 @@ in with self; { wnl = derive2 { name="wnl"; version="0.4.1"; sha256="0gr0jf549nmavlzra6b1jg9306chl2l5qivizn5xkkcf8hmq5rm6"; depends=[numDeriv]; }; wnominate = derive2 { name="wnominate"; version="1.2.5"; sha256="0pvw36jzx90z7ah4f7cyf95csdn5x7n9rh3ddsppa61y1dmjsn5k"; depends=[pscl]; }; woe = derive2 { name="woe"; version="0.2"; sha256="15mvcmwnrqxpzn054lq85vyzq5rgxkiwbd40gnn4s3ny1xdrwgsm"; depends=[]; }; - woeBinning = derive2 { name="woeBinning"; version="0.1.5"; sha256="04pw32vng31v1n4r1g1fisvv8cacxmcx7m65vw4a2byamp2d25yq"; depends=[]; }; + woeBinning = derive2 { name="woeBinning"; version="0.1.6"; sha256="0x890h5fh59n54587adyzphr956fkg3px8i7c378aq1fs7k35gxs"; depends=[]; }; woeR = derive2 { name="woeR"; version="0.1.3"; sha256="15bdhgjq39svzaqzmfykyaq4r543lq15jf0sz8m9bwjv2c6vlx5l"; depends=[dplyr]; }; womblR = derive2 { name="womblR"; version="1.0.3"; sha256="0g8r98lfycvsaii3zczr55pah5ffqrpinbrax41yp62w6hzgkq9b"; depends=[msm mvtnorm Rcpp RcppArmadillo]; }; - wooldridge = derive2 { name="wooldridge"; version="1.3.0"; sha256="029vdiglwkr7ilr7jvzarvphcc71n1majn6bh427b4qq7n01a7wb"; depends=[]; }; + wooldridge = derive2 { name="wooldridge"; version="1.3.1"; sha256="0471x3vszf1c4fj9pk5ix8bdmp2bnq1ghnqvwzad9chvvkpzmg3l"; depends=[]; }; word_alignment = derive2 { name="word.alignment"; version="1.0.9"; sha256="02dy4a9agfb99rjbqxy35nf11bpxyjcq15bnyzjkbvcy0ppfgz0l"; depends=[data_table openxlsx quanteda]; }; wordbankr = derive2 { name="wordbankr"; version="0.3.0"; sha256="0aa1gz3fg7h9wnk93ialwj0wjyk8wxani8galwkrms4fp7d5lmf4"; depends=[assertthat DBI dbplyr dplyr purrr rlang RMySQL robustbase stringr tidyr]; }; - wordcloud = derive2 { name="wordcloud"; version="2.5"; sha256="1ajqdkm8h1wid3d41zd8v7xzf2swid998w31zrghd45a5lcp7qcm"; depends=[RColorBrewer Rcpp slam]; }; + wordcloud = derive2 { name="wordcloud"; version="2.6"; sha256="0j96yyvm6bcrrpbdx4w26piqx44a0vbsr3px9cb4zk8a8da6jwak"; depends=[RColorBrewer Rcpp]; }; wordcloud2 = derive2 { name="wordcloud2"; version="0.2.1"; sha256="1a2q42bn65q4idxq0vxysyam16q6c18inxv4dqhfy0x52j8z9x6k"; depends=[base64enc htmlwidgets]; }; wordmatch = derive2 { name="wordmatch"; version="1.0"; sha256="0zscp361qf79y1zsliga18hc7wj36cnydshrqb9pv67b65njrznz"; depends=[plyr reshape2]; }; wordnet = derive2 { name="wordnet"; version="0.1-14"; sha256="12a21zlc7h973gi1632gngbk8b09vhp3sldh1mh9b5n6h18ga25p"; depends=[rJava]; }; wordspace = derive2 { name="wordspace"; version="0.2-0"; sha256="0rrnbimf68ax1qxsyn7g0kd76abijzxg5i11h93l0fnzi2g2a9xn"; depends=[cluster iotools MASS Matrix Rcpp sparsesvd]; }; - workflowr = derive2 { name="workflowr"; version="1.1.0"; sha256="0vpnrldn798g3hcf1i30l5306259idbn5h3s23hjx3vxqjznss7f"; depends=[callr getPass git2r glue knitr R_utils rmarkdown rprojroot rstudioapi stringr whisker yaml]; }; + workflowr = derive2 { name="workflowr"; version="1.1.1"; sha256="0qkppim5b6kb5jf0xmgaqpzhyxdcg5qfbmy3vafi5w4yw08q23q2"; depends=[callr getPass git2r glue knitr R_utils rmarkdown rprojroot rstudioapi stringr whisker yaml]; }; worldmet = derive2 { name="worldmet"; version="0.8.4"; sha256="15crnmlcj1yi9rm35n8f34jprms24r2xwx550zz627bdvq4vmam4"; depends=[doParallel dplyr foreach leaflet openair readr zoo]; }; worms = derive2 { name="worms"; version="0.2.2"; sha256="183chjdi5qvsmdznvc9igcxaz769a37rwh5nzgvf5zf012a85wir"; depends=[httr plyr]; }; worrms = derive2 { name="worrms"; version="0.2.8"; sha256="1f25x46b7hzrjz6y8ps29cfl8qa17smxbnrghf3bwhr4qc0vf5k5"; depends=[crul data_table jsonlite tibble]; }; - wosr = derive2 { name="wosr"; version="0.1.1"; sha256="1jmq4z5myjxww2lz20i70vyvsvjxm1n9ayvxggxvzl28kwhpi5ca"; depends=[httr jsonlite pbapply xml2]; }; + wosr = derive2 { name="wosr"; version="0.2.0"; sha256="0q8mswxb3w4d9pgc2fi64142i3dad4f2999vr1jvc9n8sjrmmmfc"; depends=[httr jsonlite pbapply xml2]; }; wpp2008 = derive2 { name="wpp2008"; version="1.0-1"; sha256="0gd3vjw1fpzhp3qlf1jpc24f76i0pxsjs5pb1v3k2si6df7q4msd"; depends=[]; }; wpp2010 = derive2 { name="wpp2010"; version="1.2-0"; sha256="1h87r1cn4lnx80dprvawsyzfkriscqjgr27gvv7n19wvsx8qd57k"; depends=[]; }; wpp2012 = derive2 { name="wpp2012"; version="2.2-1"; sha256="00283s4r36zzwn67fydrl7ldg6jhn14qkf47h0ifmsky95bd1n5k"; depends=[]; }; @@ -12601,8 +13162,8 @@ in with self; { wql = derive2 { name="wql"; version="0.4.9"; sha256="0m16l807mhcjkbqhlzhc24pw4hl78fjyykiszlg337x3qs803fg2"; depends=[ggplot2 reshape2 zoo]; }; wqs = derive2 { name="wqs"; version="0.0.1"; sha256="14qaa9g9v4nqrv897laflib3wwhflyfaf9wpllmbi5xfv9223rcg"; depends=[glm2 Rsolnp]; }; wrangle = derive2 { name="wrangle"; version="0.4"; sha256="0d1xdcvgcv8bn20s90sn1dmzhcdz39yr1m2bkcjbvavm132p96bl"; depends=[dplyr lazyeval magrittr tidyr]; }; - wrapr = derive2 { name="wrapr"; version="1.5.0"; sha256="1r3h4h9vd0j4pbxh72557vqhdm1b79d35ialxr5919afx0nw1sg8"; depends=[]; }; - wrassp = derive2 { name="wrassp"; version="0.1.7"; sha256="0wbgrpxp4ck8cpfnv6n5lf04ga12gn8cm3rm5jj32gcm4gvdvzjl"; depends=[]; }; + wrapr = derive2 { name="wrapr"; version="1.6.3"; sha256="0qvlyj3wnvy6wxdnkb49c7a16v14xkk5zb9bw27w06p9iikc66i0"; depends=[]; }; + wrassp = derive2 { name="wrassp"; version="0.1.8"; sha256="052x0lxpchr6f97yfj3vmhh8gc8qg5pp1m91h5akrav4yfawbs7k"; depends=[]; }; write_snns = derive2 { name="write.snns"; version="0.0-4.2"; sha256="0sxg7z8rnh4lssbivkrfxldv4ivy37wkndzzndpbvq2gbvbjnp4l"; depends=[]; }; writexl = derive2 { name="writexl"; version="1.0"; sha256="0r2v12dc4zqmr1agp6vbw0fc48i278018684x84psjjqfmnv14cf"; depends=[]; }; wrspathrow = derive2 { name="wrspathrow"; version="0.1"; sha256="1xkh12aal85qhk8d0pdj2qbi6pp4jnr6zbxkhdw2zwav57ly3f4i"; depends=[raster rgdal rgeos sp wrspathrowData]; }; @@ -12613,7 +13174,7 @@ in with self; { wskm = derive2 { name="wskm"; version="1.4.28"; sha256="0d9hcriakg6fxzc8wjsahc4zkyjza31mb9dv2h4xcf8298xa96i4"; depends=[clv lattice latticeExtra]; }; wsrf = derive2 { name="wsrf"; version="1.7.17"; sha256="0gmlvfcy2iqa5sqhwps3hx0hl9fir8nf5xq62f25sn8i3llw752z"; depends=[Rcpp]; }; wtest = derive2 { name="wtest"; version="3.1"; sha256="1rlas9jn57mcyjic9dhkqj355djldc95q07b076w847cd4pmzqvb"; depends=[]; }; - wtss = derive2 { name="wtss"; version="1.0.0"; sha256="041686mnhqcljxm3ska35mslpq30ah47anvnmrgnkx5y05pwa8pj"; depends=[jsonlite lubridate RCurl roxygen2 zoo]; }; + wtss = derive2 { name="wtss"; version="1.1.0"; sha256="019zvmq4z5xy5dwcf4g0z43x2mb14d1lgqhs1zp6821izffpbd0s"; depends=[jsonlite lubridate RCurl roxygen2 zoo]; }; wunderscraper = derive2 { name="wunderscraper"; version="0.1.0"; sha256="1h9nhxvs673n2ivw466qm77k20541cwgmmq35iv3dcb3hvw36p0r"; depends=[httr jsonlite sf tigris]; }; wux = derive2 { name="wux"; version="2.2-1"; sha256="0iw0kf0wfspnpc83v7gxhcakmp0z34cccnm0jn9c2za9ay9l2swv"; depends=[abind class corpcor fields gdata Hmisc ncdf4 reshape rgdal rgeos rworldmap sp stringr]; }; wvtool = derive2 { name="wvtool"; version="1.0"; sha256="0x9awj6g5lzqp2lhwgh9ib7jmfdzyhwazrjvw1vwacqqfhbz8qxv"; depends=[]; }; @@ -12623,20 +13184,23 @@ in with self; { x13binary = derive2 { name="x13binary"; version="1.1.39-1"; sha256="1v6slh5136av3l7bk99a57gj6i6khx2j55qv4pyz1zmrzzgaayyc"; depends=[]; }; x3ptools = derive2 { name="x3ptools"; version="0.0.1"; sha256="16kms5hbpa5hz5i0pdwx49yp2hmhyr8hd4w672vmwi94s5d84i1q"; depends=[digest rgl xml2 zoo]; }; xLLiM = derive2 { name="xLLiM"; version="2.1"; sha256="1q6ryw9z5wi0amv5f4drz14p36zy8gc2a0s59q10jixhhyas7ycl"; depends=[abind capushe corpcor igraph MASS Matrix]; }; - xROI = derive2 { name="xROI"; version="0.1.2"; sha256="01xicw6ffrzs0df69dmylfxxfszqy5j81vba1w1l99h7hxq5a6bs"; depends=[colourpicker data_table jpeg lubridate moments plotly raster RCurl rgdal rjson shiny shinyAce shinyBS shinydashboard shinyFiles shinyjs shinythemes shinyTime sp stringr tiff]; }; - xSub = derive2 { name="xSub"; version="0.0.1"; sha256="0ccvkdylsia8qkfjlbbyggpy4l8z3r05cmvp4xb3j4628fa82jav"; depends=[countrycode haven RCurl]; }; + xROI = derive2 { name="xROI"; version="0.9.9"; sha256="10wr1298066mncycmcbgqrpbd3fnd36f8ydrq11mjg0gxcs8m3i8"; depends=[colourpicker data_table jpeg lubridate moments plotly raster RCurl rgdal rjson shiny shinyAce shinyBS shinydashboard shinyFiles shinyjs shinythemes shinyTime sp stringr tiff]; }; + xRing = derive2 { name="xRing"; version="0.1.0"; sha256="17f1jif8yw2508k86p8mjgw1h20ml5wzaff04ix9xq96plqzi8ma"; depends=[dplR imager tcltk2 tkRplotR]; }; + xSub = derive2 { name="xSub"; version="2.0.1"; sha256="0pharrgncczdq06f6cspv4is595jrbc0zik0jcps2619khs7b1q8"; depends=[countrycode haven RCurl]; }; xVA = derive2 { name="xVA"; version="0.8.1"; sha256="0wr4i37sya5gg6v63ka16g9077gxbhvjqyqfaahhban8skzl2adf"; depends=[SACCR Trading]; }; - xaringan = derive2 { name="xaringan"; version="0.6"; sha256="0jgdixgbkwp9jnvjnrzdmlawz8f24z8in56cma3hn79glbvxfaw4"; depends=[htmltools knitr rmarkdown servr xfun]; }; + xaringan = derive2 { name="xaringan"; version="0.8"; sha256="05a2x3a8irvj34zvpbnivwi73i2i6hsh63rw56lj0b4y8d8cqgby"; depends=[htmltools knitr rmarkdown servr xfun]; }; xbreed = derive2 { name="xbreed"; version="1.0.1"; sha256="0grrfra9j0k3mqikmrif5qawh4260ayr40irskzpp9ywsixim63h"; depends=[BGLR]; }; - xergm = derive2 { name="xergm"; version="1.8.2"; sha256="0rg8b0r27nzjnf0zkwfbkw96439h0b40k1l5lqi5igyr0bm7w0cc"; depends=[btergm GERGM rem tnam xergm_common]; }; + xdcclarge = derive2 { name="xdcclarge"; version="0.1.0"; sha256="1j8wsidwmfjygqlwavxinv4bqc6rddy42jdmlknsjfrrs49yj8kn"; depends=[nlshrink Rcpp RcppArmadillo]; }; + xergm = derive2 { name="xergm"; version="1.8.3"; sha256="155469550rsdwszrhw7vdgwz2h0d72a8f4hirrb6hny7f1q63ykk"; depends=[btergm GERGM rem tnam xergm_common]; }; xergm_common = derive2 { name="xergm.common"; version="1.7.7"; sha256="0nfls8a1knmnjjrrw0q93qsfrrb9p3yqsm5dxp13z0780vrzxvcj"; depends=[ergm network]; }; xesreadR = derive2 { name="xesreadR"; version="0.2.2"; sha256="1y7iilqdj9jv5snzylihs996hvpcj9s3yaiy7wr20m5yh1ngwkvj"; depends=[bupaR data_table dplyr lubridate purrr stringr tidyr XML xml2]; }; - xfun = derive2 { name="xfun"; version="0.2"; sha256="0zl22fcw90kdvzkjyf6vbmdmn9rz3bl51522fasvmykypffyng4a"; depends=[]; }; + xfun = derive2 { name="xfun"; version="0.4"; sha256="0991ywgc2dsraba91kkj37akhfzhzn02cnz7c88hhdis9kag3pwv"; depends=[]; }; xgboost = derive2 { name="xgboost"; version="0.71.2"; sha256="134q69xbi93ajjlwrp838jgypjdjipmbkzmr31mvc100i9nsr14x"; depends=[data_table magrittr Matrix stringi]; }; xgobi = derive2 { name="xgobi"; version="1.2-15"; sha256="03ym5mm16rb1bdwrymr393r3xgprp0ign45ryym3g0x2zi8dy557"; depends=[]; }; xhmmScripts = derive2 { name="xhmmScripts"; version="1.1"; sha256="1qryyb34jx9c64l8bnwp40b08y81agdj5w0icj8dk052x50ip1hl"; depends=[gplots plotrix]; }; - xkcd = derive2 { name="xkcd"; version="0.0.5"; sha256="1cq4n7w4adj24qq658z15jkqvrn4pd5abxpcsdkzb2cq98m69iis"; depends=[extrafont ggplot2 Hmisc]; }; + xkcd = derive2 { name="xkcd"; version="0.0.6"; sha256="1z2y0ihn68ppay7xkglhw7djki5654g6z4bbpyy41if57z9q554f"; depends=[extrafont ggplot2 Hmisc]; }; xkcdcolors = derive2 { name="xkcdcolors"; version="1.0"; sha256="07fnjv01r3b951dqca2zs9b9f6hsgbpbpsrggvb8rps53kpid0i7"; depends=[FNN]; }; + xlm = derive2 { name="xlm"; version="0.1.1"; sha256="0hr95x3s3gbyj12xb8kvy2kzlmjr2ycdw79r2kfcqvvabd2h41dv"; depends=[data_table httr R6 RJSONIO]; }; xlsimple = derive2 { name="xlsimple"; version="0.0.1"; sha256="1x0b2pb1sg2sqmh4z03bchsc9fhcphi6mxk4nbb6my2cr0kqrrdq"; depends=[]; }; xlsx = derive2 { name="xlsx"; version="0.6.1"; sha256="1d58qlzdj4vrk4vnlyzri600ix7z3wnc30gnbcc1qz27nlbbv055"; depends=[rJava xlsxjars]; }; xlsxjars = derive2 { name="xlsxjars"; version="0.6.1"; sha256="1rka5smm7yqnhhlblpihhciydfap4i6kjaa4a7isdg7qjmzm3h9p"; depends=[rJava]; }; @@ -12644,32 +13208,33 @@ in with self; { xlutils3 = derive2 { name="xlutils3"; version="0.1.0"; sha256="1cxishi62bd36zlsy5qhzix1p68akdf9kpjg9gfm9aqpcijzccb9"; depends=[magrittr readxl]; }; xmeta = derive2 { name="xmeta"; version="1.1-4"; sha256="1y9jldi8qn4jpr05g8fnvb23gig180hh36pc2v4y8n8289s9yvg2"; depends=[aod glmmML metafor mvmeta numDeriv]; }; xml2 = derive2 { name="xml2"; version="1.2.0"; sha256="154lmksfiwkhnlmryas25mjhfg6k4mmnnk7bbb29mnn5x5pr2yha"; depends=[Rcpp]; }; - xmlparsedata = derive2 { name="xmlparsedata"; version="1.0.1"; sha256="0q9d4l3p4ypc0qswnjwrd3as9bx9f1niixsc19y1msva51sg5h39"; depends=[]; }; - xmlrpc2 = derive2 { name="xmlrpc2"; version="1.0"; sha256="1h99z0kmmp5rmyglqwpaan6hbb8kg8q4783kjsyww43fl0l3imd8"; depends=[base64enc curl xml2]; }; - xmrr = derive2 { name="xmrr"; version="1.0.1"; sha256="0h5861mym7k7xkby6zilcxq8i3yr06kcaam5pzi2y0q85iycb88f"; depends=[dplyr ggplot2 tidyr]; }; + xmlparsedata = derive2 { name="xmlparsedata"; version="1.0.2"; sha256="1npf4ng9d34k56ib1ac4cb3p2x8gqm3jha1sc25nv6546ahcrcjh"; depends=[]; }; + xmlrpc2 = derive2 { name="xmlrpc2"; version="1.1"; sha256="13rfw0civp3hzi4hn31x1idliid1qb73495x4c31z5msd35lzxrs"; depends=[base64enc curl xml2]; }; + xmrr = derive2 { name="xmrr"; version="1.0.36"; sha256="0xxi8z9sp156508y5a7f4ax8yry7lg4qmn0hyk04dn1xr7syd4gs"; depends=[dplyr ggplot2 tidyr]; }; xoi = derive2 { name="xoi"; version="0.67-4"; sha256="180zzc81d883qzl1xgj88d9aslqmsgdvv8w1mx2613h1rkirkpdp"; depends=[qtl]; }; + xopen = derive2 { name="xopen"; version="1.0.0"; sha256="1vrvgdika1d63dwygynbv2wmd87ll8dji5dy89hj576n8hw601z2"; depends=[processx]; }; xplain = derive2 { name="xplain"; version="0.2.1"; sha256="01hl9dxiqqxzdixqccga0sywlhv97pi1l51r9sr7v106s7q11jxn"; depends=[RCurl readr XML]; }; - xpose = derive2 { name="xpose"; version="0.4.2"; sha256="11k07z76fpp4fvp3kfx1jc7bx1mwc1xfwyp46xwfhgfbazbvyfd7"; depends=[dplyr ggforce ggplot2 purrr readr rlang stringr tibble tidyr vpc]; }; + xpose = derive2 { name="xpose"; version="0.4.3"; sha256="1h1wx0pyr2l93pc59ybgg124fs1qhwhhyarafmh4s9b0ps0a451c"; depends=[dplyr ggforce ggplot2 purrr readr rlang stringr tibble tidyr vpc]; }; xpose4 = derive2 { name="xpose4"; version="4.6.1"; sha256="1722ai8r94dmy4d2r728iir0hl2b2gmym8xjsqscfc6jw070734i"; depends=[dplyr gam Hmisc lattice lazyeval readr survival]; }; xptr = derive2 { name="xptr"; version="1.1"; sha256="12yvgbwm311hap3kk24wdx5zz084h0lhkj9k10mjzqp4a6aayi88"; depends=[]; }; xray = derive2 { name="xray"; version="0.2"; sha256="1ibj92ljlj8a5rmbrci691yhpd4kwrfyl944nzl2dcbf58l01dzq"; depends=[dplyr foreach ggplot2 lubridate scales]; }; xseq = derive2 { name="xseq"; version="0.2.1"; sha256="0bsakbfvkfv39q2ch2g21b17g84470sq4v73355cljlshsi6404i"; depends=[e1071 gptk impute preprocessCore RColorBrewer sfsmisc]; }; xslt = derive2 { name="xslt"; version="1.3"; sha256="0giqzmdby9ax8gwx9b7xqka28k3hgymv4289k8p8dvg26d683p3l"; depends=[Rcpp xml2]; }; xsp = derive2 { name="xsp"; version="0.1.2"; sha256="1jbmxa234v52qji8sz4bkg24c2n65b0zh9py1wyyfzw9n1wx5w0r"; depends=[ggplot2 reshape2]; }; - xtable = derive2 { name="xtable"; version="1.8-2"; sha256="0398qkpvlw3dv0myz4mjcyqwpwc2m31l127r8vdzwc71wb6s28qn"; depends=[]; }; + xtable = derive2 { name="xtable"; version="1.8-3"; sha256="09f311gq9g7dzf8jdvcx72j11xb7p00jlg066jjbpa6pz3zv1cjk"; depends=[]; }; xtal = derive2 { name="xtal"; version="1.15"; sha256="1zq3vd5x3vw6acn47yd2x7kflr9sm3znmdkm68cs64ha54jbl3vs"; depends=[]; }; - xtensor = derive2 { name="xtensor"; version="0.6.1-0"; sha256="0ajxzjj8nyn7a0z16agj499j6qwj0ykag152pvmqvdm000dx5n1l"; depends=[Rcpp]; }; + xtensor = derive2 { name="xtensor"; version="0.8.1-0"; sha256="0qyqadg2yvvf51ch2w1aqsi1j0yfgw1167fps4s0k7gjvv692zfx"; depends=[Rcpp]; }; xtermStyle = derive2 { name="xtermStyle"; version="3.0.5"; sha256="1q4qq8w4sgxbbb1x0i4k5xndvwisvjszg830wspwb37wigxz8xvz"; depends=[]; }; xtractomatic = derive2 { name="xtractomatic"; version="3.4.2"; sha256="1w70kk608avnf7zdjx79gxqmj12cw86ma4x0b9j92md1vmpw5389"; depends=[dplyr httr ncdf4 readr sp]; }; - xts = derive2 { name="xts"; version="0.10-2"; sha256="1i11fczks4lh8rpi6xbm9bm7f3jpcp6xw03kv178g3n3361qhmc1"; depends=[zoo]; }; - xwf = derive2 { name="xwf"; version="0.2-1"; sha256="1g94wbsq8flnkxxfxx6yg87siiwpyrx219an9a2cf1blnwjv9b68"; depends=[mgcv]; }; - xxIRT = derive2 { name="xxIRT"; version="2.1.0"; sha256="17cyvbywfvbs93ky8qmzh6fp94dk24p3wpzb76lxb8nfsvakq5pf"; depends=[ggplot2 lpSolveAPI reshape2]; }; + xts = derive2 { name="xts"; version="0.11-1"; sha256="17d3g14xkxa1a5z5gd3gk1xjqfkjg1ik3i12q0arina8frql3jhd"; depends=[zoo]; }; + xwf = derive2 { name="xwf"; version="0.2-2"; sha256="1psryam65pg7flfa20smm6lx184f76dhjv1lig8sy7y9hphfv3s1"; depends=[mgcv]; }; + xxIRT = derive2 { name="xxIRT"; version="2.1.1"; sha256="1y21yc840kq98sy06qcnlnzizv5aya5yllx4mjx9njv7mvcsp1wr"; depends=[ggplot2 glpkAPI lpSolveAPI reshape2]; }; xyloplot = derive2 { name="xyloplot"; version="1.6"; sha256="0d1dv3syfjwcp9fil9bl1my19d0kdyz1qrp1yf7ykrk8aq91762v"; depends=[]; }; xyz = derive2 { name="xyz"; version="0.2"; sha256="13w4sb4pvgciwr8wsz785dafj2k2kpx7znz46r5d32wx88vkycp4"; depends=[Rcpp]; }; - yaImpute = derive2 { name="yaImpute"; version="1.0-29"; sha256="1zxl4l54y9f9lmi17hlhsbsc4f1qb0dnnl5dg9frhq6bhw2lqxqb"; depends=[]; }; - yacca = derive2 { name="yacca"; version="1.1"; sha256="0wg2wgvh1najmccmgzyigj11mshrdb8w4r2pqq360dracpn0ak6x"; depends=[]; }; + yaImpute = derive2 { name="yaImpute"; version="1.0-30"; sha256="0s997gb9ig2if6nc4g89vi1yz6my3z9m7ai3bgjqw836643dmhg9"; depends=[]; }; + yacca = derive2 { name="yacca"; version="1.1.1"; sha256="1hxgkyxipk27p74vdkiy8a3wjymhcsc6ad3y9mf15qsl2xim6wwl"; depends=[]; }; yakmoR = derive2 { name="yakmoR"; version="0.1.1"; sha256="09aklz79s0911p2wnpd7gc6vrbr9lmiskhkahsc63pdigggmq9f7"; depends=[BBmisc checkmate Rcpp]; }; - yaml = derive2 { name="yaml"; version="2.1.19"; sha256="04bzrnfgbpk0rhkvzwp3k3ip7jpq26bjxz71bx5mwxmcjdb07nz5"; depends=[]; }; + yaml = derive2 { name="yaml"; version="2.2.0"; sha256="0in562nd0i23cg91a8kdbqgim656fgscykwi0icsnq53xj3srg2m"; depends=[]; }; yardstick = derive2 { name="yardstick"; version="0.0.1"; sha256="165czwi62nrhhci06fb0rfpk2gki94aiyl4wlflmgpzmspmgz7m8"; depends=[broom dplyr MLmetrics pROC rlang tibble tidyr tidyselect]; }; yarrr = derive2 { name="yarrr"; version="0.1.5"; sha256="1258bj7x4icaxfabnnd3fgwydnqbzxkih7zw0sdlwdax3q8fw5c5"; depends=[BayesFactor circlize jpeg]; }; yasp = derive2 { name="yasp"; version="0.2.0"; sha256="0fza8h9y1wmarsmjcvw4r970d6j4ii795pd2h4xh9nlsirv50adi"; depends=[]; }; @@ -12683,7 +13248,7 @@ in with self; { yuima = derive2 { name="yuima"; version="1.8.1"; sha256="1jzk3623c1cpw9j8d9b96x6n0jwz8h2izzhrdp01cwwskbnv3hq2"; depends=[boot cubature expm mvtnorm Rcpp RcppArmadillo zoo]; }; yuimaGUI = derive2 { name="yuimaGUI"; version="1.2.0"; sha256="166hsq1nc0jzkqbz08y3dl0qdi58swascbkm1lc7zhsh6g93azjs"; depends=[DT ggplot2 plotly quantmod sde shiny shinyBS shinydashboard shinyjs yuima]; }; yummlyr = derive2 { name="yummlyr"; version="0.1.1"; sha256="0xrk6g58laksz92d8mxck923sk4j92g55szrkxk123wjp5kg9vx6"; depends=[httr jsonlite]; }; - zCompositions = derive2 { name="zCompositions"; version="1.1.1"; sha256="1j6v7mfxhn67mr3q6cvcjj9pqc8a02w114z8q74h3l6jw8ahjg6m"; depends=[MASS NADA truncnorm]; }; + zCompositions = derive2 { name="zCompositions"; version="1.1.1-1"; sha256="147layq5hj7hba2a5q9sb7dwv6rwha9d8040p1npmdif3nbap2zd"; depends=[MASS NADA truncnorm]; }; zFactor = derive2 { name="zFactor"; version="0.1.7"; sha256="0vsjafg65qydfz0j75rrw40si5v2hwbf09z6d58wzffrwzgrwpvd"; depends=[data_table dplyr ggplot2 rootSolve tibble tidyr]; }; zTree = derive2 { name="zTree"; version="1.0.4"; sha256="058vjvxn1lw07nxw8rs1b8vnw6ccxh3swrmvjicvr35xmakj8qa0"; depends=[plyr]; }; zeallot = derive2 { name="zeallot"; version="0.1.0"; sha256="1sd1igcfnv27pa3bqxlbyxchi562h7grnjg1l7wxx3bwr49i57s3"; depends=[]; }; @@ -12692,6 +13257,7 @@ in with self; { zeligverse = derive2 { name="zeligverse"; version="0.1.1"; sha256="1hf3hbgzdlhhyy2gvg984dwp8d0qm0ziyn8i9h5x00gwf74vn9dr"; depends=[Amelia dplyr MatchIt purrr rstudioapi tibble WhatIf Zelig ZeligChoice ZeligEI]; }; zendeskR = derive2 { name="zendeskR"; version="0.4"; sha256="06cjwk08w3x6dx717123psinid5bx6c563jnfn890373jw6xnfrk"; depends=[RCurl rjson]; }; zenplots = derive2 { name="zenplots"; version="0.0-3"; sha256="1ba9xv522knzbirl6ac5hzbmsw8ignsmymbkps2w057w0fsc9iyz"; depends=[graph MASS PairViz]; }; + zeroEQpart = derive2 { name="zeroEQpart"; version="0.1.0"; sha256="1n24nqyl0irpyspwx4b73xy228a84aa8zsn9fcf2lrlni5vyzmm0"; depends=[MASS ppcor]; }; zetadiv = derive2 { name="zetadiv"; version="1.1.1"; sha256="0laxp2pd5s0s9wcnvs1r4shid2gi8ap4y9py6gpl207ywq6cxmgz"; depends=[car glm2 Imap mgcv nnls scam vegan]; }; zfa = derive2 { name="zfa"; version="1.0"; sha256="0lddwpifkzggzvy56ans5pfknfr8laxcg264f3ph2z150gw1plsh"; depends=[SKAT]; }; zic = derive2 { name="zic"; version="0.9.1"; sha256="1vd64ljigf6iwgzlgdxgj65nlwir176h7ddznddpaz2abh6n6zwp"; depends=[coda Rcpp RcppArmadillo]; }; @@ -12703,16 +13269,16 @@ in with self; { zoeppritz = derive2 { name="zoeppritz"; version="1.0-7"; sha256="14j9jl2g7gn94nzs96mwsgwlxnfbr1crjfmfwbi3rk367xi197jb"; depends=[]; }; zoib = derive2 { name="zoib"; version="1.5.1"; sha256="0lsyr8hfhk4dk129x2l1793v6nmf2k97wnsc44ir6ymip3i4zfld"; depends=[abind coda Formula matrixcalc rjags]; }; zonator = derive2 { name="zonator"; version="0.5.9"; sha256="04gjrm9nxnxsigrc30zghmv37ijsx27134hfnrbm51smw2y60dm4"; depends=[ggplot2 raster RColorBrewer reshape2 rgdal]; }; - zoo = derive2 { name="zoo"; version="1.8-2"; sha256="1lpwigxmi5sc23xrha4gcsccsm4yfsg0sa97y6vac3pg1lliblvx"; depends=[lattice]; }; + zoo = derive2 { name="zoo"; version="1.8-4"; sha256="1pywcp86kqijdrvl42qwdy75szrag9pzj0p88zbrj2r1klb8rn5i"; depends=[lattice]; }; zooaRch = derive2 { name="zooaRch"; version="1.2"; sha256="0grc378xppv0303sf4flfqz5002vq5a23nzbq4bsff41rww7dihc"; depends=[ggplot2]; }; zooaRchGUI = derive2 { name="zooaRchGUI"; version="1.0.2"; sha256="0snggx0d69ajz6xxwnv03l12jpjrjkpy2dgf4lrpm2l8rspd27i4"; depends=[car coda foreign geomorph ggplot2 MASS pgirmess raster readxl rjags sp spdep splancs tcltk2 tkrplot vegan]; }; - zoocat = derive2 { name="zoocat"; version="0.2.0"; sha256="1xqi90jnpqjdf3zr4pldh1a2gjppjwjrgkq71rvdhmcrf5s8jav0"; depends=[plyr reshape2 scales zoo]; }; + zoocat = derive2 { name="zoocat"; version="0.2.0.1"; sha256="0rdjgf1gvnixqwxrnvzswb53yzcvjgvfkrms6d38bhfyw320kgdp"; depends=[plyr reshape2 scales zoo]; }; zooimage = derive2 { name="zooimage"; version="5.5.2"; sha256="0ck8w0zb9l1n9xvjwqshq9q9l8pigy3yslq2hnfbgcwk17kk9mp8"; depends=[digest DT filehash jpeg MASS mda mlearning png shiny svDialogs svMisc tiff]; }; zoom = derive2 { name="zoom"; version="2.0.4"; sha256="03f5rxfr6ncf1j6vpn7pip21q7ylj4bx0a5xphqb6x6i33lxf1g5"; depends=[]; }; zoon = derive2 { name="zoon"; version="0.6.3"; sha256="11accyiv9n2zk7fq5bapbmv1ixadab19666i8w41bw642lafgivq"; depends=[dismo plyr randomForest raster RCurl rfigshare rgdal roxygen2 rworldmap SDMTools sp testthat]; }; zscorer = derive2 { name="zscorer"; version="0.1.0"; sha256="1199d72v9hm7k5jnll2ngn3jlfsiaxrrpbqzrkl0fghm6wnxcc6h"; depends=[]; }; zstdr = derive2 { name="zstdr"; version="0.1.1"; sha256="1rigsdh0f68l6vvvxp277cp8hbxj10x4588s6az1njxfpxrc8ajj"; depends=[Rcpp]; }; - ztable = derive2 { name="ztable"; version="0.1.8"; sha256="1hk5k9614n52dpfrhdws06w4gvwhnz8q47x4cwxx88qmrzm8z2m3"; depends=[]; }; + ztable = derive2 { name="ztable"; version="0.2.0"; sha256="0g7khk5ifsdh9p31wlwh2l5mn1hzxzpv6qcn1wh34vsfjdmijjwy"; depends=[flextable magrittr moonBook officer RColorBrewer scales stringr]; }; ztype = derive2 { name="ztype"; version="0.1.0"; sha256="0brbq2rgkl4mhjbb70kkfv47lzs66k9ppfs2klavcbripirxn5fx"; depends=[assertthat dplyr ggplot2 lubridate magrittr rvest stringr]; }; zyp = derive2 { name="zyp"; version="0.10-1"; sha256="0f1fqqxysf3psnvn08s5qly2c958h1hhznjjj8mvpjr5g6hqlr1k"; depends=[Kendall]; }; } diff --git a/pkgs/development/r-modules/default.nix b/pkgs/development/r-modules/default.nix index c9766a985f6fb6f9d422800707aa6cd5b17a11a1..428d6c60546e15e7c3ea21814cc506c3632cd14d 100644 --- a/pkgs/development/r-modules/default.nix +++ b/pkgs/development/r-modules/default.nix @@ -278,11 +278,10 @@ let kza = [ pkgs.fftw.dev ]; libamtrack = [ pkgs.gsl_1 ]; magick = [ pkgs.imagemagick.dev ]; - mixcat = [ pkgs.gsl_1 ]; mvabund = [ pkgs.gsl_1 ]; mwaved = [ pkgs.fftw.dev ]; ncdf4 = [ pkgs.netcdf ]; - nloptr = [ pkgs.nlopt ]; + nloptr = [ pkgs.nlopt pkgs.pkgconfig ]; odbc = [ pkgs.unixODBC ]; outbreaker = [ pkgs.gsl_1 ]; pander = [ pkgs.pandoc pkgs.which ]; @@ -353,7 +352,6 @@ let sf = [ pkgs.gdal pkgs.proj pkgs.geos ]; showtext = [ pkgs.zlib pkgs.libpng pkgs.icu pkgs.freetype.dev ]; simplexreg = [ pkgs.gsl_1 ]; - SOD = [ pkgs.opencl-headers ]; spate = [ pkgs.fftw.dev ]; ssanv = [ pkgs.proj ]; stsm = [ pkgs.gsl_1 ]; @@ -602,11 +600,9 @@ let "RcmdrPlugin_coin" "RcmdrPlugin_depthTools" "RcmdrPlugin_DoE" - "RcmdrPlugin_doex" "RcmdrPlugin_EACSPIR" "RcmdrPlugin_EBM" "RcmdrPlugin_EcoVirtual" - "RcmdrPlugin_epack" "RcmdrPlugin_EZR" "RcmdrPlugin_FactoMineR" "RcmdrPlugin_HH" @@ -624,7 +620,6 @@ let "RcmdrPlugin_sampling" "RcmdrPlugin_SCDA" "RcmdrPlugin_SLC" - "RcmdrPlugin_SM" "RcmdrPlugin_sos" "RcmdrPlugin_steepness" "RcmdrPlugin_survival" @@ -641,7 +636,6 @@ let "rich" "rioja" "ripa" - "rite" "RNCEP" "RQDA" "RSDA" @@ -861,10 +855,9 @@ let }); nloptr = old.nloptr.overrideDerivation (attrs: { - configureFlags = [ - "--with-nlopt-cflags=-I${pkgs.nlopt}/include" - "--with-nlopt-libs='-L${pkgs.nlopt}/lib -lnlopt_cxx -lm'" - ]; + # Drop bundled nlopt source code. Probably unnecessary, but I want to be + # sure we're using the system library, not this one. + preConfigure = "rm -r src/nlopt_src"; }); V8 = old.V8.overrideDerivation (attrs: { @@ -948,6 +941,15 @@ let PKGCONFIG_CFLAGS = "-I${pkgs.openssl.dev}/include -I${pkgs.cyrus_sasl.dev}/include -I${pkgs.zlib.dev}/include"; PKGCONFIG_LIBS = "-Wl,-rpath,${pkgs.openssl.out}/lib -L${pkgs.openssl.out}/lib -L${pkgs.cyrus_sasl.out}/lib -L${pkgs.zlib.out}/lib -lssl -lcrypto -lsasl2 -lz"; }); + + ps = old.ps.overrideDerivation (attrs: { + preConfigure = "patchShebangs configure"; + }); + + rlang = old.rlang.overrideDerivation (attrs: { + preConfigure = "patchShebangs configure"; + }); + }; in self diff --git a/pkgs/development/ruby-modules/gem-config/default.nix b/pkgs/development/ruby-modules/gem-config/default.nix index b5aa0933c2e860bc582b9f65a576f4962be89666..c199e6f087b1a0a3e5eb1622fba1cd47677d0161 100644 --- a/pkgs/development/ruby-modules/gem-config/default.nix +++ b/pkgs/development/ruby-modules/gem-config/default.nix @@ -191,6 +191,10 @@ in [ darwin.apple_sdk.frameworks.CoreServices ]; }; + iconv = attrs: { + buildFlags = lib.optional stdenv.isDarwin "--with-iconv-dir=${libiconv}"; + }; + # disable bundle install as it can't install anything in addition to what is # specified in pkgs/applications/misc/jekyll/Gemfile anyway. Also do chmod_R # to compensate for read-only files in site_template in nix store. @@ -226,6 +230,12 @@ in ''; }; + metasploit-framework = attrs: { + preInstall = '' + export HOME=$TMPDIR + ''; + }; + msgpack = attrs: { buildInputs = [ msgpack ]; }; diff --git a/pkgs/development/tools/ammonite/default.nix b/pkgs/development/tools/ammonite/default.nix index 7544958cb3140f11918833bc886408df5cf92dcb..ab1f6c7706fe3ec1852cf22ad4ec35737f4cac84 100644 --- a/pkgs/development/tools/ammonite/default.nix +++ b/pkgs/development/tools/ammonite/default.nix @@ -5,12 +5,12 @@ with stdenv.lib; stdenv.mkDerivation rec { name = "ammonite-${version}"; - version = "1.2.1"; + version = "1.4.2"; scalaVersion = "2.12"; src = fetchurl { url = "https://github.com/lihaoyi/Ammonite/releases/download/${version}/${scalaVersion}-${version}"; - sha256 = "096xychdq1pmyjfv4cv4pvm29dk539rxpq3iaz9rpznp01af4mjf"; + sha256 = "10m6nnvrwzkbyhiq77wlqgzvqfqmn16y4sp983dyihjljxalygax"; }; propagatedBuildInputs = [ jre ] ; diff --git a/pkgs/development/tools/analysis/checkstyle/default.nix b/pkgs/development/tools/analysis/checkstyle/default.nix index d99ab3df75efc89a1ec8eb5d0d9bde8d2cd5b3a2..6da3d067c3aee29b98ded3f8d11ebd82751edaf8 100644 --- a/pkgs/development/tools/analysis/checkstyle/default.nix +++ b/pkgs/development/tools/analysis/checkstyle/default.nix @@ -1,15 +1,16 @@ { stdenv, fetchurl, makeWrapper, jre }: stdenv.mkDerivation rec { - version = "8.13"; + version = "8.14"; name = "checkstyle-${version}"; src = fetchurl { url = "https://github.com/checkstyle/checkstyle/releases/download/checkstyle-${version}/checkstyle-${version}-all.jar"; - sha256 = "05w60yg5ghjdg36k4xd8m0yyfia9viyz51j053030b74bq65yvai"; + sha256 = "11lpyjh0rbz8821q0gcrll5ichf8hrmlfy66ary5jjiyxc85z762"; }; - nativeBuildInputs = [ makeWrapper jre ]; + nativeBuildInputs = [ makeWrapper ]; + buildInputs = [ jre ]; unpackPhase = ":"; diff --git a/pkgs/development/tools/analysis/flow/default.nix b/pkgs/development/tools/analysis/flow/default.nix index 00b12970628483a0b800ebad6bae93412f17b5ff..3d7a8abf4fe69b4e5441f2bc3f062b3d44795da9 100644 --- a/pkgs/development/tools/analysis/flow/default.nix +++ b/pkgs/development/tools/analysis/flow/default.nix @@ -1,33 +1,28 @@ -{ stdenv, fetchFromGitHub, lib, ocamlPackages, libelf, cf-private, CoreServices }: - -with lib; +{ stdenv, fetchFromGitHub, ocamlPackages, cf-private, CoreServices }: stdenv.mkDerivation rec { - version = "0.80.0"; + version = "0.85.0"; name = "flow-${version}"; src = fetchFromGitHub { - owner = "facebook"; - repo = "flow"; - rev = "v${version}"; - sha256 = "0jixisimqwbr46gh9357ya0rscv46svm6kqnawkq1shlf9nwa3lx"; + owner = "facebook"; + repo = "flow"; + rev = "refs/tags/v${version}"; + sha256 = "0kci017bl4ihq89zpwlgdlwzv7kili8146940kyar5v66kgf7xsh"; }; installPhase = '' - mkdir -p $out/bin - cp bin/flow $out/bin/ + install -Dm755 -t $out/bin bin/flow ''; - buildInputs = [ libelf - ] ++ (with ocamlPackages; [ - ocaml findlib camlp4 sedlex ocamlbuild lwt_ppx ppx_deriving ppx_gen_rec lwt_log wtf8 dtoa - ]) ++ optionals stdenv.isDarwin [ cf-private CoreServices ]; + buildInputs = (with ocamlPackages; [ ocaml findlib ocamlbuild dtoa core_kernel sedlex ocaml_lwt lwt_log lwt_ppx ppx_deriving ppx_gen_rec ppx_tools_versioned visitors wtf8 ]) + ++ stdenv.lib.optionals stdenv.isDarwin [ cf-private CoreServices ]; meta = with stdenv.lib; { description = "A static type checker for JavaScript"; - homepage = http://flowtype.org; - license = licenses.bsd3; - platforms = [ "x86_64-linux" "x86_64-darwin" ]; + homepage = https://flow.org/; + license = licenses.mit; + platforms = ocamlPackages.ocaml.meta.platforms; maintainers = with maintainers; [ puffnfresh globin ]; }; } diff --git a/pkgs/development/tools/analysis/pmd/default.nix b/pkgs/development/tools/analysis/pmd/default.nix index 89b0a33c06822898da75a14c44b43a564c840059..3724494da1175d60f4bc6d7c3cdd662b9c8100bb 100644 --- a/pkgs/development/tools/analysis/pmd/default.nix +++ b/pkgs/development/tools/analysis/pmd/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { name = "pmd-${version}"; - version = "6.8.0"; + version = "6.9.0"; buildInputs = [ unzip ]; src = fetchurl { url = "mirror://sourceforge/pmd/pmd-bin-${version}.zip"; - sha256 = "1vfkg2l3sl5ahhs89nvkg0z1ah1k67c44nwpvaymq73rb2bb8ibr"; + sha256 = "13w07f68gfcjy3a2zk4z4b0f95qscbkjlylckphmyxhw7vmgzlmn"; }; installPhase = '' @@ -17,7 +17,7 @@ stdenv.mkDerivation rec { ''; meta = with stdenv.lib; { - description = "An extensible cross-language static code analyzer."; + description = "An extensible cross-language static code analyzer"; homepage = https://pmd.github.io/; platforms = platforms.unix; license = with licenses; [ bsdOriginal asl20 ]; diff --git a/pkgs/development/tools/analysis/radare2/default.nix b/pkgs/development/tools/analysis/radare2/default.nix index 2f0878da8c6fea99470d4395fb13553dc3589fee..0381dc85895f0bedf1ea9e27c477111617026b79 100644 --- a/pkgs/development/tools/analysis/radare2/default.nix +++ b/pkgs/development/tools/analysis/radare2/default.nix @@ -90,12 +90,12 @@ in { # # DO NOT EDIT! Automatically generated by ./update.py radare2 = generic { - version_commit = "19720"; - gittap = "3.0.0"; - gittip = "13e3ebd2aa6653eb5b6bdd65a93dcddf3550fcfa"; - rev = "3.0.0"; - version = "3.0.0"; - sha256 = "0awbk9v7qjkarscaqzyly310f04dxgndxvxwxbjrsswqlp206b40"; + version_commit = "19915"; + gittap = "3.0.1"; + gittip = "addb7f21e73073600fd6205e385fa096084701f5"; + rev = "3.0.1"; + version = "3.0.1"; + sha256 = "0da4ns11valy305074cri3in5zcafjw3vxc53b4yg37114ly433h"; cs_tip = "e2c1cd46c06744beaceff42dd882de3a90f0a37c"; cs_sha256 = "1czzqj8zdjgh7h2ixi26ij3mm4bgm4xw2slin6fv73nic8yaw722"; }; diff --git a/pkgs/development/tools/analysis/verasco/default.nix b/pkgs/development/tools/analysis/verasco/default.nix deleted file mode 100644 index 7f623e72dc3130d694727c66d43db8a349812628..0000000000000000000000000000000000000000 --- a/pkgs/development/tools/analysis/verasco/default.nix +++ /dev/null @@ -1,51 +0,0 @@ -{ stdenv, lib, fetchurl -, coq, ocaml, findlib, menhir, zarith -, tools ? stdenv.cc -}: - -assert lib.versionAtLeast ocaml.version "4.02"; - -stdenv.mkDerivation rec { - name = "verasco-1.3"; - src = fetchurl { - url = "http://compcert.inria.fr/verasco/release/${name}.tgz"; - sha256 = "0zvljrpwnv443k939zlw1f7ijwx18nhnpr8jl3f01jc5v66hr2k8"; - }; - - buildInputs = [ coq ocaml findlib menhir zarith ]; - - preConfigure = '' - substituteInPlace ./configure --replace '{toolprefix}gcc' '{toolprefix}cc' - ''; - - configureFlags = [ - "-toolprefix ${tools}/bin/" - (if stdenv.isDarwin then "ia32-macosx" else "ia32-linux") - ]; - - prefixKey = "-prefix "; - - enableParallelBuilding = true; - buildFlags = "proof extraction ccheck"; - - installPhase = '' - mkdir -p $out/bin - cp ccheck $out/bin/ - ln -s $out/bin/ccheck $out/bin/verasco - if [ -e verasco.ini ] - then - mkdir -p $out/share - cp verasco.ini $out/share/ - fi - mkdir -p $out/lib/compcert - cp -riv runtime/include $out/lib/compcert - ''; - - meta = { - homepage = http://compcert.inria.fr/verasco/; - description = "A static analyzer for the CompCert subset of ISO C 1999"; - maintainers = with stdenv.lib.maintainers; [ vbgl ]; - license = stdenv.lib.licenses.unfree; - platforms = with stdenv.lib.platforms; darwin ++ linux; - }; -} diff --git a/pkgs/development/tools/ansible-lint/default.nix b/pkgs/development/tools/ansible-lint/default.nix index c460662f4f88c8c05960af72651a24592619ab1d..5433725b30501116c1909ffdb56bd01cb253d6b9 100644 --- a/pkgs/development/tools/ansible-lint/default.nix +++ b/pkgs/development/tools/ansible-lint/default.nix @@ -19,6 +19,10 @@ pythonPackages.buildPythonPackage rec { patchShebangs bin/ansible-lint ''; + preBuild = '' + export HOME="$TMP" + ''; + checkPhase = '' nosetests test ''; diff --git a/pkgs/development/tools/apktool/default.nix b/pkgs/development/tools/apktool/default.nix index 42deae45a25d0aeafc99dad50c5e06aaf44aaa4d..17b0265fddde3f29a64d0c28f7e6a1ce546f1ebc 100644 --- a/pkgs/development/tools/apktool/default.nix +++ b/pkgs/development/tools/apktool/default.nix @@ -23,7 +23,7 @@ stdenv.mkDerivation rec { mkdir -p "$out/bin" makeWrapper "${jre}/bin/java" "$out/bin/apktool" \ --add-flags "-jar $out/libexec/apktool/apktool.jar" \ - --prefix PATH : "${buildTools}/build-tools/25.0.1/" + --prefix PATH : "${buildTools.v25_0_1}/build-tools/25.0.1/" ''; meta = with stdenv.lib; { diff --git a/pkgs/development/tools/asmfmt/default.nix b/pkgs/development/tools/asmfmt/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..d2cb7e807b584ea8f4233a7c636f84ea99dbea8c --- /dev/null +++ b/pkgs/development/tools/asmfmt/default.nix @@ -0,0 +1,37 @@ +{ buildGoPackage +, lib +, fetchFromGitHub +, fetchpatch +}: + +buildGoPackage rec { + name = "asmfmt-${version}"; + version = "1.1"; + + goPackagePath = "github.com/klauspost/asmfmt"; + + src = fetchFromGitHub { + owner = "klauspost"; + repo = "asmfmt"; + rev = "v${version}"; + sha256 = "08mybfizcvck460axakycz9ndzcgwqilp5mmgm4bl8hfrn36mskw"; + }; + + patches = [ + (fetchpatch { + excludes = ["README.md"]; + url = "https://github.com/klauspost/asmfmt/commit/39a37c8aed8095e0fdfb07f78fc8acbd465d9627.patch"; + sha256 = "18bc77l87mf0yvqc3adlakxz6wflyqfsc2wrmh9q0nlqghlmnw5k"; + }) + ]; + + goDeps = ./deps.nix; + + meta = with lib; { + description = "Go Assembler Formatter"; + homepage = https://github.com/klauspost/asmfmt; + license = licenses.mit; + maintainers = with maintainers; [ kalbasit ]; + platforms = platforms.linux ++ platforms.darwin; + }; +} diff --git a/pkgs/development/tools/asmfmt/deps.nix b/pkgs/development/tools/asmfmt/deps.nix new file mode 100644 index 0000000000000000000000000000000000000000..0288fc206d4921e4990c22cfdf8b576c15b8a64b --- /dev/null +++ b/pkgs/development/tools/asmfmt/deps.nix @@ -0,0 +1,20 @@ +[ + { + goPackagePath = "golang.org/x/tools"; + fetch = { + type = "git"; + url = "https://go.googlesource.com/tools"; + rev = "3a10b9bf0a52df7e992a8c3eb712a86d3c896c75"; + sha256 = "19f3dijcc54jnd7458jab2dgpd0gzccmv2qympd9wi8cc8jpnhws"; + }; + } + { + goPackagePath = "sourcegraph.com/sqs/goreturns"; + fetch = { + type = "git"; + url = "https://github.com/sqs/goreturns"; + rev = "538ac601451833c7c4449f8431d65d53c1c60e41"; + sha256 = "0gcplch8zmcgwl6xvcffxg50g3xnf60n7dlqxgn51179qcjr354p"; + }; + } +] diff --git a/pkgs/development/tools/build-managers/bazel/bazel-deps/default.nix b/pkgs/development/tools/build-managers/bazel/bazel-deps/default.nix index af8cd5faacdecf4815357c54dbacbd764a5347b2..142f729517d58d435f6a01796507ea2b10fff2a0 100644 --- a/pkgs/development/tools/build-managers/bazel/bazel-deps/default.nix +++ b/pkgs/development/tools/build-managers/bazel/bazel-deps/default.nix @@ -2,7 +2,7 @@ buildBazelPackage rec { name = "bazel-deps-${version}"; - version = "2018-08-16"; + version = "2018-11-01"; meta = with stdenv.lib; { homepage = "https://github.com/johnynek/bazel-deps"; @@ -15,8 +15,8 @@ buildBazelPackage rec { src = fetchFromGitHub { owner = "johnynek"; repo = "bazel-deps"; - rev = "942a0b03cbf159dd6e0f0f40787d6d8e4e832d81"; - sha256 = "0ls2jvz9cxa169a8pbbykv2d4dik4ipf7dj1lkqx5g0ss7lgs6q5"; + rev = "1af8921d52f053fad575f26762533a3823b4a847"; + sha256 = "0srz0sbz4bq9n7cp4g1n3kd3j6rcjqfi25sq8aa64l27yqzbk53x"; }; bazelTarget = "//src/scala/com/github/johnynek/bazel_deps:parseproject_deploy.jar"; @@ -66,12 +66,13 @@ buildBazelPackage rec { find . -type d -empty -delete ''; - sha256 = "0jkzf1hay0h8ksk9lhfvdliac6c5d7nih934i1xjbrn6zqlivy19"; + sha256 = "1gvl4a9z8p4ch2gmcj3lpp0imrkrvy8wng949p3wlkibi14hc6ww"; }; buildAttrs = { installPhase = '' mkdir -p $out/bin/bazel-bin/src/scala/com/github/johnynek/bazel_deps + cp gen_maven_deps.sh $out/bin wrapProgram "$out/bin/gen_maven_deps.sh" --set JAVA_HOME "${jre}" --prefix PATH : ${lib.makeBinPath [ jre ]} cp bazel-bin/src/scala/com/github/johnynek/bazel_deps/parseproject_deploy.jar $out/bin/bazel-bin/src/scala/com/github/johnynek/bazel_deps diff --git a/pkgs/development/tools/build-managers/bazel/default.nix b/pkgs/development/tools/build-managers/bazel/default.nix index 19836b412c04a2c1d645030805fd8400fa11f2c7..966c91028ded74439cb86af53cf004edf8ab5bd1 100644 --- a/pkgs/development/tools/build-managers/bazel/default.nix +++ b/pkgs/development/tools/build-managers/bazel/default.nix @@ -192,13 +192,51 @@ stdenv.mkDerivation rec { installPhase = '' mkdir -p $out/bin - mv output/bazel $out/bin + + # official wrapper scripts that searches for $WORKSPACE_ROOT/tools/bazel + # if it can’t find something in tools, it calls $out/bin/bazel-real + cp scripts/packages/bazel.sh $out/bin/bazel + mv output/bazel $out/bin/bazel-real + wrapProgram "$out/bin/bazel" --set JAVA_HOME "${runJdk}" + + # shell completion files mkdir -p $out/share/bash-completion/completions $out/share/zsh/site-functions mv output/bazel-complete.bash $out/share/bash-completion/completions/bazel cp scripts/zsh_completion/_bazel $out/share/zsh/site-functions/ ''; + doInstallCheck = true; + installCheckPhase = '' + export TEST_TMPDIR=$(pwd) + + hello_test () { + $out/bin/bazel test --test_output=errors \ + examples/cpp:hello-success_test \ + examples/java-native/src/test/java/com/example/myproject:hello + } + + # test whether $WORKSPACE_ROOT/tools/bazel works + + mkdir -p tools + cat > tools/bazel <<"EOF" + #!${stdenv.shell} -e + exit 1 + EOF + chmod +x tools/bazel + + # first call should fail if tools/bazel is used + ! hello_test + + cat > tools/bazel <<"EOF" + #!${stdenv.shell} -e + exec "$BAZEL_REAL" "$@" + EOF + + # second call succeeds because it defers to $out/bin/bazel-real + hello_test + ''; + # Save paths to hardcoded dependencies so Nix can detect them. postFixup = '' mkdir -p $out/nix-support diff --git a/pkgs/development/tools/build-managers/gradle/default.nix b/pkgs/development/tools/build-managers/gradle/default.nix index 566694e06b04b57a670b564c3c7d55f7c0967770..a369df68f0509f42d8786300e0f3c263e3cf032f 100644 --- a/pkgs/development/tools/build-managers/gradle/default.nix +++ b/pkgs/development/tools/build-managers/gradle/default.nix @@ -52,12 +52,12 @@ rec { }; gradle_latest = gradleGen rec { - name = "gradle-4.10"; + name = "gradle-4.10.2"; nativeVersion = "0.14"; src = fetchurl { url = "http://services.gradle.org/distributions/${name}-bin.zip"; - sha256 = "064zyli00cj3clbn631kivg5izhkyyf31f6x65a2rqac229gv314"; + sha256 = "0a9s2iisivgaapsz4vq1l8fa2w0wnlq0cj67yv5a0rybnahnv75l"; }; }; diff --git a/pkgs/development/tools/build-managers/meson/default.nix b/pkgs/development/tools/build-managers/meson/default.nix index 35ae59af617cf0d34b9f1516ed9e907f6580b36b..0ba44b1b17a7248d61212b9f07e2ddf1ae0c39c6 100644 --- a/pkgs/development/tools/build-managers/meson/default.nix +++ b/pkgs/development/tools/build-managers/meson/default.nix @@ -1,4 +1,4 @@ -{ lib, python3Packages, stdenv, writeTextDir, substituteAll }: +{ lib, python3Packages, stdenv, writeTextDir, substituteAll, targetPackages }: python3Packages.buildPythonApplication rec { version = "0.46.1"; @@ -47,20 +47,20 @@ python3Packages.buildPythonApplication rec { crossFile = writeTextDir "cross-file.conf" '' [binaries] - c = '${stdenv.cc.targetPrefix}cc' - cpp = '${stdenv.cc.targetPrefix}c++' - ar = '${stdenv.cc.bintools.targetPrefix}ar' - strip = '${stdenv.cc.bintools.targetPrefix}strip' + c = '${targetPackages.stdenv.cc.targetPrefix}cc' + cpp = '${targetPackages.stdenv.cc.targetPrefix}c++' + ar = '${targetPackages.stdenv.cc.bintools.targetPrefix}ar' + strip = '${targetPackages.stdenv.cc.bintools.targetPrefix}strip' pkgconfig = 'pkg-config' [properties] needs_exe_wrapper = true [host_machine] - system = '${stdenv.targetPlatform.parsed.kernel.name}' - cpu_family = '${stdenv.targetPlatform.parsed.cpu.family}' - cpu = '${stdenv.targetPlatform.parsed.cpu.name}' - endian = ${if stdenv.targetPlatform.isLittleEndian then "'little'" else "'big'"} + system = '${targetPackages.stdenv.targetPlatform.parsed.kernel.name}' + cpu_family = '${targetPackages.stdenv.targetPlatform.parsed.cpu.family}' + cpu = '${targetPackages.stdenv.targetPlatform.parsed.cpu.name}' + endian = ${if targetPackages.stdenv.targetPlatform.isLittleEndian then "'little'" else "'big'"} ''; # 0.45 update enabled tests but they are failing @@ -70,7 +70,7 @@ python3Packages.buildPythonApplication rec { inherit (stdenv) cc; - isCross = stdenv.buildPlatform != stdenv.hostPlatform; + isCross = stdenv.targetPlatform != stdenv.hostPlatform; meta = with lib; { homepage = http://mesonbuild.com; diff --git a/pkgs/development/tools/build-managers/qbs/default.nix b/pkgs/development/tools/build-managers/qbs/default.nix index dc2d545a7654bd8a65ff2b88944dcb3d60c1e648..99fb9090c0d5b87708130730577b4f7bd9a3755e 100644 --- a/pkgs/development/tools/build-managers/qbs/default.nix +++ b/pkgs/development/tools/build-managers/qbs/default.nix @@ -1,41 +1,29 @@ -{ stdenv, qt5, fetchFromGitHub }: +{ stdenv, fetchFromGitHub, qmake, qtbase, qtscript }: stdenv.mkDerivation rec { name = "qbs-${version}"; - version = "1.8"; + version = "1.12.1"; src = fetchFromGitHub { - owner = "qt-labs"; + owner = "qbs"; repo = "qbs"; - rev = "fa9c21d6908e0dad805113f570ac883c1dc5067a"; - sha256 = "1manriz75rav1vldkk829yk1la9md4m872l5ykl9m982i9801d9g"; + rev = "v${version}"; + sha256 = "14b7bz07yfrmbry57n3xh8w4nbapm6aknk45fgi7ljvsfzp85fzl"; }; - enableParallelBuilding = true; - - buildInputs = with qt5; [ - qtbase - qtscript - ]; + nativeBuildInputs = [ qmake ]; - installFlags = [ "INSTALL_ROOT=$(out)" ]; + qmakeFlags = [ "QBS_INSTALL_PREFIX=$(out)" "qbs.pro" ]; - buildPhase = '' - # From http://doc.qt.io/qbs/building.html - qmake -r qbs.pro - make - ''; + buildInputs = [ qtbase qtscript ]; - postInstall = '' - mv $out/usr/local/* "$out" - ''; + enableParallelBuilding = true; meta = with stdenv.lib; { description = "A tool that helps simplify the build process for developing projects across multiple platforms"; - license = licenses.lgpl21; + license = licenses.lgpl3; maintainers = with maintainers; [ expipiplus1 ]; - inherit version; platforms = platforms.linux; }; } diff --git a/pkgs/development/tools/check/default.nix b/pkgs/development/tools/check/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..dfa164e6755ca05f57cc41e45f35066f6a236282 --- /dev/null +++ b/pkgs/development/tools/check/default.nix @@ -0,0 +1,30 @@ +{ buildGoPackage +, lib +, fetchFromGitLab +}: + +buildGoPackage rec { + name = "check-unstable-${version}"; + version = "2018-09-12"; + rev = "88db195993f8e991ad402754accd0635490769f9"; + + goPackagePath = "gitlab.com/opennota/check"; + + src = fetchFromGitLab { + inherit rev; + + owner = "opennota"; + repo = "check"; + sha256 = "1983xmdkgpqda4qz8ashc6xv1zg5jl4zly3w566grxc5sfxpgf0i"; + }; + + goDeps = ./deps.nix; + + meta = with lib; { + description = "A set of utilities for checking Go sources."; + homepage = https://gitlab.com/opennota/check; + license = licenses.gpl3; + maintainers = with maintainers; [ kalbasit ]; + platforms = platforms.linux ++ platforms.darwin; + }; +} diff --git a/pkgs/development/tools/check/deps.nix b/pkgs/development/tools/check/deps.nix new file mode 100644 index 0000000000000000000000000000000000000000..b9c50d95d117c6ca2284af1faa23d20232b70b41 --- /dev/null +++ b/pkgs/development/tools/check/deps.nix @@ -0,0 +1,11 @@ +[ + { + goPackagePath = "golang.org/x/tools"; + fetch = { + type = "git"; + url = "https://go.googlesource.com/tools"; + rev = "677d2ff680c1"; + sha256 = "0vp1w1haqcjd82dxd6x9xrllbfwvm957rxwkpji96cgvhsli2bq5"; + }; + } +] diff --git a/pkgs/development/tools/chefdk/Gemfile.lock b/pkgs/development/tools/chefdk/Gemfile.lock index 139649b78f1418f7589c1499588a452e772a22b9..545375d878057855ef53e94e5c2ee353c04a6bb5 100644 --- a/pkgs/development/tools/chefdk/Gemfile.lock +++ b/pkgs/development/tools/chefdk/Gemfile.lock @@ -252,7 +252,7 @@ GEM coderay (~> 1.1.0) method_source (~> 0.9.0) public_suffix (3.0.1) - rack (2.0.3) + rack (2.0.6) rainbow (2.2.2) rake rake (12.3.0) @@ -397,4 +397,4 @@ DEPENDENCIES test-kitchen BUNDLED WITH - 1.14.6 + 1.16.4 diff --git a/pkgs/development/tools/chefdk/gemset.nix b/pkgs/development/tools/chefdk/gemset.nix index d4e97deea8dca41010b204ab8ca6a4ab8978e29f..228b3cd85135ac74a8c602a8b32c069c966321a8 100644 --- a/pkgs/development/tools/chefdk/gemset.nix +++ b/pkgs/development/tools/chefdk/gemset.nix @@ -791,10 +791,10 @@ rack = { source = { remotes = ["https://rubygems.org"]; - sha256 = "1kczgp2zwcrvp257dl8j4y3mnyqflxr7rn4vl9w1rwblznx9n74c"; + sha256 = "1pcgv8dv4vkaczzlix8q3j68capwhk420cddzijwqgi2qb4lm1zm"; type = "gem"; }; - version = "2.0.3"; + version = "2.0.6"; }; rainbow = { dependencies = ["rake"]; diff --git a/pkgs/development/tools/cppclean/default.nix b/pkgs/development/tools/cppclean/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..96fe07a7799add7c7502262c657d56d378471cc4 --- /dev/null +++ b/pkgs/development/tools/cppclean/default.nix @@ -0,0 +1,31 @@ +{ stdenv, lib, fetchFromGitHub, python3Packages }: + +with python3Packages; + +buildPythonApplication rec { + name = "cppclean-unstable-${version}"; + version = "2018-05-12"; + + src = fetchFromGitHub { + owner = "myint"; + repo = "cppclean"; + rev = "e7da41eca5e1fd2bd1dddd6655e50128bb96dc28"; + sha256 = "0pymh6r7y19bwcypfkmgwyixrx36pmz338jd83yrjflsbjlriqm4"; + }; + + postUnpack = '' + patchShebangs . + ''; + + checkPhase = '' + ./test.bash + ''; + + meta = with stdenv.lib; { + description = "Finds problems in C++ source that slow development of large code bases"; + homepage = https://github.com/myint/cppclean; + license = licenses.asl20; + maintainers = with maintainers; [ nthorne ]; + platforms = platforms.linux; + }; +} diff --git a/pkgs/development/tools/database/pgcli/default.nix b/pkgs/development/tools/database/pgcli/default.nix index bc1c2515bfa7df95e8524084f2cd46548cc09770..73e3438333835f26a661649726aa249381eda5fd 100644 --- a/pkgs/development/tools/database/pgcli/default.nix +++ b/pkgs/development/tools/database/pgcli/default.nix @@ -1,27 +1,25 @@ { lib, pythonPackages, fetchFromGitHub }: pythonPackages.buildPythonApplication rec { - name = "pgcli-${version}"; - version = "1.11.0"; + pname = "pgcli"; + version = "2.0.0"; - src = fetchFromGitHub { - owner = "dbcli"; - repo = "pgcli"; - rev = "v${version}"; - sha256 = "01qcvl0iwabinq3sb4340js8v3sbwkbxi64sg4xy76wj8xr6kgsk"; + src = pythonPackages.fetchPypi { + inherit pname version; + sha256 = "085fna5nc72nfj1gw0m4ia6wzayinqaffmjy3ajldha1727vqwzi"; }; - buildInputs = with pythonPackages; [ pytest mock ]; - checkPhase = '' - mkdir /tmp/homeless-shelter - HOME=/tmp/homeless-shelter py.test tests -k 'not test_missing_rc_dir and not test_quoted_db_uri and not test_port_db_uri' - ''; - propagatedBuildInputs = with pythonPackages; [ - cli-helpers click configobj humanize prompt_toolkit psycopg2 + cli-helpers click configobj humanize prompt_toolkit_2 psycopg2 pygments sqlparse pgspecial setproctitle keyring ]; + checkInputs = with pythonPackages; [ pytest mock ]; + + checkPhase = '' + py.test + ''; + meta = with lib; { description = "Command-line interface for PostgreSQL"; longDescription = '' diff --git a/pkgs/development/tools/database/timescaledb-parallel-copy/default.nix b/pkgs/development/tools/database/timescaledb-parallel-copy/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..d667e49e7cbeba2aa12ce1163d4a6e67447276ab --- /dev/null +++ b/pkgs/development/tools/database/timescaledb-parallel-copy/default.nix @@ -0,0 +1,26 @@ +{ stdenv, buildGoPackage, fetchFromGitHub }: + +buildGoPackage rec { + name = "timescaledb-parallel-copy-${version}"; + version = "2018-05-14"; + + owner = "timescale"; + repo = "timescaledb-parallel-copy"; + + goPackagePath = with src; "github.com/${owner}/${repo}"; + goDeps = ./deps.nix; + + src = fetchFromGitHub { + inherit owner repo; + rev = "20d3e8f8219329f2f4b0a5aa985f280dd04d10bb"; + sha256 = "0waaccw991cnxaxjdxh9ksb94kiiyx1r7gif6pkd5k58js0kfvdn"; + }; + + meta = with stdenv.lib; { + description = "Bulk, parallel insert of CSV records into PostgreSQL"; + homepage = http://github.com/timescale/timescaledb-parallel-copy; + license = licenses.asl20; + platforms = platforms.linux; + maintainers = with maintainers; [ thoughtpolice ]; + }; +} diff --git a/pkgs/development/tools/database/timescaledb-parallel-copy/deps.nix b/pkgs/development/tools/database/timescaledb-parallel-copy/deps.nix new file mode 100644 index 0000000000000000000000000000000000000000..c672611e09c10afb644e2be5c602cabcd83cc3f7 --- /dev/null +++ b/pkgs/development/tools/database/timescaledb-parallel-copy/deps.nix @@ -0,0 +1,21 @@ +# This file was generated by https://github.com/kamilchm/go2nix v1.2.1 +[ + { + goPackagePath = "github.com/jmoiron/sqlx"; + fetch = { + type = "git"; + url = "https://github.com/jmoiron/sqlx"; + rev = "0dae4fefe7c0e190f7b5a78dac28a1c82cc8d849"; + sha256 = "0r8fyj70n0v84byvagw8w8rzz532s94mjr72b9sx018j0b6xglmy"; + }; + } + { + goPackagePath = "github.com/lib/pq"; + fetch = { + type = "git"; + url = "https://github.com/lib/pq"; + rev = "90697d60dd844d5ef6ff15135d0203f65d2f53b8"; + sha256 = "0hb4bfsk8g5473yzbf3lzrb373xicakjznkf0v085xgimz991i9r"; + }; + } +] diff --git a/pkgs/development/tools/deadcode/default.nix b/pkgs/development/tools/deadcode/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..fbed4e905cfc58f43349061e1e4b7be0df180e7b --- /dev/null +++ b/pkgs/development/tools/deadcode/default.nix @@ -0,0 +1,31 @@ +{ buildGoPackage +, lib +, fetchFromGitHub +}: + +# TODO(yl): should we package https://github.com/remyoudompheng/go-misc instead of +# the standalone extract of deadcode from it? +buildGoPackage rec { + name = "deadcode-unstable-${version}"; + version = "2016-07-24"; + rev = "210d2dc333e90c7e3eedf4f2242507a8e83ed4ab"; + + goPackagePath = "github.com/tsenart/deadcode"; + excludedPackages = "\\(cmd/fillswitch/test-fixtures\\)"; + + src = fetchFromGitHub { + inherit rev; + + owner = "tsenart"; + repo = "deadcode"; + sha256 = "05kif593f4wygnrq2fdjhn7kkcpdmgjnykcila85d0gqlb1f36g0"; + }; + + meta = with lib; { + description = "deadcode is a very simple utility which detects unused declarations in a Go package."; + homepage = https://github.com/remyoudompheng/go-misc/tree/master/deadcode; + license = licenses.bsd3; + maintainers = with maintainers; [ kalbasit ]; + platforms = platforms.linux ++ platforms.darwin; + }; +} diff --git a/pkgs/development/tools/errcheck/default.nix b/pkgs/development/tools/errcheck/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..1ce49a4cbb9d67cb570b2753f474cba28f5761b7 --- /dev/null +++ b/pkgs/development/tools/errcheck/default.nix @@ -0,0 +1,29 @@ +{ buildGoPackage +, lib +, fetchFromGitHub +}: + +buildGoPackage rec { + name = "errcheck-${version}"; + version = "1.1.0"; + + goPackagePath = "github.com/kisielk/errcheck"; + excludedPackages = "\\(testdata\\)"; + + src = fetchFromGitHub { + owner = "kisielk"; + repo = "errcheck"; + rev = "v${version}"; + sha256 = "19vd4rxmqbk5lpiav3pf7df3yjlz0l0dwx9mn0gjq5f998iyhy6y"; + }; + + goDeps = ./deps.nix; + + meta = with lib; { + description = "errcheck is a program for checking for unchecked errors in go programs."; + homepage = https://github.com/kisielk/errcheck; + license = licenses.mit; + maintainers = with maintainers; [ kalbasit ]; + platforms = platforms.linux ++ platforms.darwin; + }; +} diff --git a/pkgs/development/tools/errcheck/deps.nix b/pkgs/development/tools/errcheck/deps.nix new file mode 100644 index 0000000000000000000000000000000000000000..8470c9e12aa6ae7ba2e60f6542ca171b2cafa3cc --- /dev/null +++ b/pkgs/development/tools/errcheck/deps.nix @@ -0,0 +1,20 @@ +[ + { + goPackagePath = "github.com/kisielk/gotool"; + fetch = { + type = "git"; + url = "https://github.com/kisielk/gotool"; + rev = "80517062f582ea3340cd4baf70e86d539ae7d84d"; + sha256 = "14af2pa0ssyp8bp2mvdw184s5wcysk6akil3wzxmr05wwy951iwn"; + }; + } + { + goPackagePath = "golang.org/x/tools"; + fetch = { + type = "git"; + url = "https://go.googlesource.com/tools"; + rev = "3a10b9bf0a52df7e992a8c3eb712a86d3c896c75"; + sha256 = "19f3dijcc54jnd7458jab2dgpd0gzccmv2qympd9wi8cc8jpnhws"; + }; + } +] diff --git a/pkgs/development/tools/flyway/default.nix b/pkgs/development/tools/flyway/default.nix index 70f6d8021ff8d3732a8b2350cf4f06827f26e0f2..7386dc0eeeba69dddee44842f63ec47eac08684c 100644 --- a/pkgs/development/tools/flyway/default.nix +++ b/pkgs/development/tools/flyway/default.nix @@ -1,22 +1,23 @@ { stdenv, fetchurl, jre_headless, makeWrapper }: let - version = "5.1.4"; + version = "5.2.1"; in stdenv.mkDerivation { name = "flyway-${version}"; src = fetchurl { - url = "https://repo1.maven.org/maven2/org/flywaydb/flyway-commandline/5.1.4/flyway-commandline-${version}.tar.gz"; - sha256 = "1raz125k55v6xa8gp6ylcjxz77r5364xqp9di46rayx3z2282f7q"; + url = "https://repo1.maven.org/maven2/org/flywaydb/flyway-commandline/${version}/flyway-commandline-${version}.tar.gz"; + sha256 = "0lm536qc8pqj4s21dd47gi99nwwflk17gqzfwaflghw3fnhn7i1s"; }; buildInputs = [ makeWrapper ]; dontBuild = true; dontStrip = true; installPhase = '' mkdir -p $out/bin $out/share/flyway - cp -r sql jars lib drivers $out/share/flyway + cp -r sql jars drivers conf $out/share/flyway + cp -r lib/community $out/share/flyway/lib makeWrapper "${jre_headless}/bin/java" $out/bin/flyway \ --add-flags "-Djava.security.egd=file:/dev/../dev/urandom" \ - --add-flags "-cp '$out/share/flyway/lib/*:$out/share/flyway/drivers/*'" \ + --add-flags "-classpath '$out/share/flyway/lib/*:$out/share/flyway/drivers/*'" \ --add-flags "org.flywaydb.commandline.Main" ''; meta = with stdenv.lib; { diff --git a/pkgs/development/tools/global-platform-pro/default.nix b/pkgs/development/tools/global-platform-pro/default.nix index ab32216de80dfdb28a50383ee382799a661fd4a4..9841e7900cd5aaa8711f0f53e3a0a22ecf65a8e3 100644 --- a/pkgs/development/tools/global-platform-pro/default.nix +++ b/pkgs/development/tools/global-platform-pro/default.nix @@ -62,6 +62,7 @@ stdenv.mkDerivation rec { ''; homepage = https://github.com/martinpaljak/GlobalPlatformPro; license = with licenses; [ lgpl3 ]; + maintainers = with maintainers; [ ekleog ]; platforms = platforms.all; }; } diff --git a/pkgs/development/tools/go-tools/default.nix b/pkgs/development/tools/go-tools/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..7e599ed8de71c89d221fa28ccb952745c9d8b19a --- /dev/null +++ b/pkgs/development/tools/go-tools/default.nix @@ -0,0 +1,29 @@ +{ buildGoPackage +, lib +, fetchFromGitHub +}: + +buildGoPackage rec { + name = "go-tools-${version}"; + version = "2017.2.2"; + + goPackagePath = "honnef.co/go/tools"; + excludedPackages = ''\(simple\|ssa\|ssa/ssautil\|lint\|staticcheck\|unused\)/testdata''; + + src = fetchFromGitHub { + owner = "dominikh"; + repo = "go-tools"; + rev = "${version}"; + sha256 = "1khl6szjj0skkfqp234p9rf3icik7fw2pk2x0wbj3wa9q3f84hb7"; + }; + + goDeps = ./deps.nix; + + meta = with lib; { + description = "A collection of tools and libraries for working with Go code, including linters and static analysis."; + homepage = https://staticcheck.io; + license = licenses.mit; + maintainers = with maintainers; [ kalbasit ]; + platforms = platforms.linux ++ platforms.darwin; + }; +} diff --git a/pkgs/development/tools/go-tools/deps.nix b/pkgs/development/tools/go-tools/deps.nix new file mode 100644 index 0000000000000000000000000000000000000000..afe5e50e47bdd4f3b22a7785730e6792f71bfee4 --- /dev/null +++ b/pkgs/development/tools/go-tools/deps.nix @@ -0,0 +1,20 @@ +[ + { + goPackagePath = "github.com/kisielk/gotool"; + fetch = { + type = "git"; + url = "https://github.com/kisielk/gotool"; + rev = "80517062f582ea3340cd4baf70e86d539ae7d84d"; + sha256 = "14af2pa0ssyp8bp2mvdw184s5wcysk6akil3wzxmr05wwy951iwn"; + }; + } + { + goPackagePath = "golang.org/x/tools"; + fetch = { + type = "git"; + url = "https://go.googlesource.com/tools"; + rev = "96e9e165b75e735822645eff82850b08c377be36"; + sha256 = "1zj9ck5sg9b0pphxybmvxf64hhcap7v7j37fx3v5aknf18crjjdg"; + }; + } +] diff --git a/pkgs/development/tools/gocode-gomod/default.nix b/pkgs/development/tools/gocode-gomod/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..b0069d3488e04fd9fe1061ad49e27e196aab68d9 --- /dev/null +++ b/pkgs/development/tools/gocode-gomod/default.nix @@ -0,0 +1,50 @@ +{ stdenv, buildGoPackage, fetchFromGitHub }: + +buildGoPackage rec { + name = "gocode-gomod-unstable-${version}"; + version = "2018-10-16"; + rev = "12640289f65065d652cc942ffa01a52bece1dd53"; + + goPackagePath = "github.com/stamblerre/gocode"; + + # we must allow references to the original `go` package, + # because `gocode` needs to dig into $GOROOT to provide completions for the + # standard packages. + allowGoReference = true; + + excludedPackages = ''internal/suggest/testdata''; + + src = fetchFromGitHub { + inherit rev; + + owner = "stamblerre"; + repo = "gocode"; + sha256 = "1avv0b5p2l8pv38m5gg97k57ndr5k9yy0rfkmmwjq96pa221hs1q"; + }; + + goDeps = ./deps.nix; + + postInstall = '' + mv $bin/bin/gocode $bin/bin/gocode-gomod + ''; + + meta = with stdenv.lib; { + description = "An autocompletion daemon for the Go programming language"; + longDescription = '' + Gocode is a helper tool which is intended to be integrated with your + source code editor, like vim, neovim and emacs. It provides several + advanced capabilities, which currently includes: + + - Context-sensitive autocompletion + + It is called daemon, because it uses client/server architecture for + caching purposes. In particular, it makes autocompletions very fast. + Typical autocompletion time with warm cache is 30ms, which is barely + noticeable. + ''; + homepage = https://github.com/stamblerre/gocode; + license = licenses.mit; + platforms = platforms.all; + maintainers = with maintainers; [ kalbasit ]; + }; +} diff --git a/pkgs/development/tools/gocode-gomod/deps.nix b/pkgs/development/tools/gocode-gomod/deps.nix new file mode 100644 index 0000000000000000000000000000000000000000..ac966269706342b4a7db21554d17a0d38be0379b --- /dev/null +++ b/pkgs/development/tools/gocode-gomod/deps.nix @@ -0,0 +1,11 @@ +[ + { + goPackagePath = "golang.org/x/tools"; + fetch = { + type = "git"; + url = "https://go.googlesource.com/tools"; + rev = "78dc5bac0cacea7969e98b79c3b86597e0aa4e25"; + sha256 = "16jg2x1sfm39kz4rchn0gxyq99fnkxw6v51wxriqbs76a2wrznp9"; + }; + } +] diff --git a/pkgs/development/tools/gocode/default.nix b/pkgs/development/tools/gocode/default.nix index bb44074dfc752b178e49cf5bd9a46796ab358157..3351c0e986b35d2d79865d32fff82091c174c2a9 100644 --- a/pkgs/development/tools/gocode/default.nix +++ b/pkgs/development/tools/gocode/default.nix @@ -2,10 +2,11 @@ buildGoPackage rec { name = "gocode-unstable-${version}"; - version = "2018-10-22"; - rev = "e893215113e5f7594faa3a8eb176c2700c921276"; + version = "2018-11-05"; + rev = "0af7a86943a6e0237c90f8aeb74a882e1862c898"; goPackagePath = "github.com/mdempsky/gocode"; + excludedPackages = ''internal/suggest/testdata''; # we must allow references to the original `go` package, # because `gocode` needs to dig into $GOROOT to provide completions for the @@ -17,17 +18,11 @@ buildGoPackage rec { owner = "mdempsky"; repo = "gocode"; - sha256 = "1zsll7yghv64890k7skl0g2lg9rsaiisgrfnb8kshsxrcxi1kc2l"; + sha256 = "0fxqn0v6dbwarn444lc1xrx5vfkcidi73f4ba7l4clsb9qdqgyam"; }; goDeps = ./deps.nix; - preBuild = '' - # getting an error building the testdata because they contain invalid files - # on purpose as part of the testing. - rm -r go/src/$goPackagePath/internal/suggest/testdata - ''; - meta = with stdenv.lib; { description = "An autocompletion daemon for the Go programming language"; longDescription = '' diff --git a/pkgs/development/tools/gocode/deps.nix b/pkgs/development/tools/gocode/deps.nix index 4eefdd9c6d0433d003f4aaa41a1ca83f82ee40b5..ac966269706342b4a7db21554d17a0d38be0379b 100644 --- a/pkgs/development/tools/gocode/deps.nix +++ b/pkgs/development/tools/gocode/deps.nix @@ -4,8 +4,8 @@ fetch = { type = "git"; url = "https://go.googlesource.com/tools"; - rev = "6fe81c087942f588f40c3f67b41ce284f2f70eee"; - sha256 = "04yl7rk2lf94bxz74ja5snh7ava9gcnf2yx6y002pfkk538r6w5d"; + rev = "78dc5bac0cacea7969e98b79c3b86597e0aa4e25"; + sha256 = "16jg2x1sfm39kz4rchn0gxyq99fnkxw6v51wxriqbs76a2wrznp9"; }; } ] diff --git a/pkgs/development/tools/goconst/default.nix b/pkgs/development/tools/goconst/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..9ef94ffdc7fa3584a886bcec218b4d05ac3a3d98 --- /dev/null +++ b/pkgs/development/tools/goconst/default.nix @@ -0,0 +1,27 @@ +{ buildGoPackage +, lib +, fetchFromGitHub +}: + +buildGoPackage rec { + name = "goconst-${version}"; + version = "1.1.0"; + + goPackagePath = "github.com/jgautheron/goconst"; + excludedPackages = ''testdata''; + + src = fetchFromGitHub { + owner = "jgautheron"; + repo = "goconst"; + rev = version; + sha256 = "0zhscvv9w54q1h2vs8xx3qkz98cf36qhxjvdq0xyz3qvn4vhnyw6"; + }; + + meta = with lib; { + description = "Find in Go repeated strings that could be replaced by a constant"; + homepage = https://github.com/jgautheron/goconst; + license = licenses.mit; + maintainers = with maintainers; [ kalbasit ]; + platforms = platforms.linux ++ platforms.darwin; + }; +} diff --git a/pkgs/development/tools/gocyclo/default.nix b/pkgs/development/tools/gocyclo/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..91ebaff803ebbfef8ec7da4ac3ee9621f64c3a9a --- /dev/null +++ b/pkgs/development/tools/gocyclo/default.nix @@ -0,0 +1,28 @@ +{ buildGoPackage +, lib +, fetchFromGitHub +}: + +buildGoPackage rec { + name = "gocyclo-unstable-${version}"; + version = "2015-02-08"; + rev = "aa8f8b160214d8dfccfe3e17e578dd0fcc6fede7"; + + goPackagePath = "github.com/alecthomas/gocyclo"; + + src = fetchFromGitHub { + inherit rev; + + owner = "alecthomas"; + repo = "gocyclo"; + sha256 = "094rj97q38j53lmn2scshrg8kws8c542yq5apih1ahm9wdkv8pxr"; + }; + + meta = with lib; { + description = "Calculate cyclomatic complexities of functions in Go source code."; + homepage = https://github.com/alecthomas/gocyclo; + license = licenses.bsd3; + maintainers = with maintainers; [ kalbasit ]; + platforms = platforms.linux ++ platforms.darwin; + }; +} diff --git a/pkgs/development/tools/gogetdoc/default.nix b/pkgs/development/tools/gogetdoc/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..7724ee49465ce21a2a31f36324ca600c4595770e --- /dev/null +++ b/pkgs/development/tools/gogetdoc/default.nix @@ -0,0 +1,31 @@ +{ buildGoPackage +, lib +, fetchFromGitHub +}: + +buildGoPackage rec { + name = "gogetdoc-unstable-${version}"; + version = "2018-10-25"; + rev = "9098cf5fc236a5e25060730544af2ba6d65cd968"; + + goPackagePath = "github.com/zmb3/gogetdoc"; + excludedPackages = "\\(testdata\\)"; + + src = fetchFromGitHub { + inherit rev; + + owner = "zmb3"; + repo = "gogetdoc"; + sha256 = "159dgkd2lz07kimbpzminli5p539l4ry0dr93r46iz3lk5q76znl"; + }; + + goDeps = ./deps.nix; + + meta = with lib; { + description = "Gets documentation for items in Go source code"; + homepage = https://github.com/zmb3/gogetdoc; + license = licenses.bsd3; + maintainers = with maintainers; [ kalbasit ]; + platforms = platforms.linux ++ platforms.darwin; + }; +} diff --git a/pkgs/development/tools/gogetdoc/deps.nix b/pkgs/development/tools/gogetdoc/deps.nix new file mode 100644 index 0000000000000000000000000000000000000000..d770057d1d787c0391b3201569d2cc883df808f3 --- /dev/null +++ b/pkgs/development/tools/gogetdoc/deps.nix @@ -0,0 +1,13 @@ +# file generated from go.mod using vgo2nix (https://github.com/adisbladis/vgo2nix) +[ + + { + goPackagePath = "golang.org/x/tools"; + fetch = { + type = "git"; + url = "https://go.googlesource.com/tools"; + rev = "6adeb8aab2de"; + sha256 = "0kylkki0ksdm12ppl37fghzbma9hmgqwph0nwngv08v4blk6li6k"; + }; + } +] diff --git a/pkgs/development/tools/gometalinter/default.nix b/pkgs/development/tools/gometalinter/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..cce678e9d0735a8bc4d8d9bb741160cbfabcf7e0 --- /dev/null +++ b/pkgs/development/tools/gometalinter/default.nix @@ -0,0 +1,70 @@ +{ buildGoPackage +, deadcode +, errcheck +, fetchFromGitHub +, go +, go-check +, go-tools +, goconst +, gocyclo +, golint +, gosec +, gotools +, ineffassign +, maligned +, interfacer +, lib +, makeWrapper +, unconvert +}: + +with lib; + +let + runtimeDeps = [ + deadcode + errcheck + go + go-check + go-tools + goconst + gocyclo + golint + gosec + gotools + ineffassign + interfacer + maligned + unconvert + ]; + +in buildGoPackage rec { + name = "gometalinter-${version}"; + version = "2.0.11"; + + goPackagePath = "github.com/alecthomas/gometalinter"; + excludedPackages = "\\(regressiontests\\)"; + + src = fetchFromGitHub { + owner = "alecthomas"; + repo = "gometalinter"; + rev = "v${version}"; + sha256 = "08p7bwvhpgizif8qi59m8mm3mcny70x9msbk8m8vjpphsq55wha4"; + }; + + postInstall = '' + wrapProgram $bin/bin/gometalinter --prefix PATH : "${makeBinPath runtimeDeps}" + ''; + + buildInputs = [ makeWrapper ]; + + allowGoReference = true; + + meta = with lib; { + description = "Concurrently run Go lint tools and normalise their output"; + homepage = https://github.com/alecthomas/gometalinter; + license = licenses.mit; + maintainers = with maintainers; [ kalbasit ]; + platforms = platforms.linux ++ platforms.darwin; + }; +} diff --git a/pkgs/development/tools/gosec/default.nix b/pkgs/development/tools/gosec/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..2cffd86f3965a386470debe4dcc8b11a1f0b9fa0 --- /dev/null +++ b/pkgs/development/tools/gosec/default.nix @@ -0,0 +1,29 @@ +{ buildGoPackage +, lib +, fetchFromGitHub +}: + +buildGoPackage rec { + name = "gosec-${version}"; + version = "1.1.0"; + + goPackagePath = "github.com/securego/gosec"; + excludedPackages = ''cmd/tlsconfig''; + + src = fetchFromGitHub { + owner = "securego"; + repo = "gosec"; + rev = "${version}"; + sha256 = "0vjn3g6w4y4ayx0g766jp31vb78cipl90fcg0mccjr0a539qrpy6"; + }; + + goDeps = ./deps.nix; + + meta = with lib; { + description = "Golang security checker"; + homepage = https://github.com/securego/gosec; + license = licenses.asl20 ; + maintainers = with maintainers; [ kalbasit ]; + platforms = platforms.linux ++ platforms.darwin; + }; +} diff --git a/pkgs/development/tools/gosec/deps.nix b/pkgs/development/tools/gosec/deps.nix new file mode 100644 index 0000000000000000000000000000000000000000..80a77e7fb807eea4f6e7859b4ed312df4bafb9ce --- /dev/null +++ b/pkgs/development/tools/gosec/deps.nix @@ -0,0 +1,193 @@ +# file generated from go.mod using vgo2nix (https://github.com/adisbladis/vgo2nix) +[ + + { + goPackagePath = "github.com/davecgh/go-spew"; + fetch = { + type = "git"; + url = "https://github.com/davecgh/go-spew"; + rev = "v1.1.1"; + sha256 = "0hka6hmyvp701adzag2g26cxdj47g21x6jz4sc6jjz1mn59d474y"; + }; + } + + { + goPackagePath = "github.com/golang/protobuf"; + fetch = { + type = "git"; + url = "https://github.com/golang/protobuf"; + rev = "v1.2.0"; + sha256 = "0kf4b59rcbb1cchfny2dm9jyznp8ri2hsb14n8iak1q8986xa0ab"; + }; + } + + { + goPackagePath = "github.com/kisielk/gotool"; + fetch = { + type = "git"; + url = "https://github.com/kisielk/gotool"; + rev = "0de1eaf82fa3"; + sha256 = "177af7bjq6clmkqshnmnwlpwvx80kpi2277q275iwq59lp48viq1"; + }; + } + + { + goPackagePath = "github.com/kr/pretty"; + fetch = { + type = "git"; + url = "https://github.com/kr/pretty"; + rev = "v0.1.0"; + sha256 = "18m4pwg2abd0j9cn5v3k2ksk9ig4vlwxmlw9rrglanziv9l967qp"; + }; + } + + { + goPackagePath = "github.com/kr/pty"; + fetch = { + type = "git"; + url = "https://github.com/kr/pty"; + rev = "v1.1.1"; + sha256 = "0383f0mb9kqjvncqrfpidsf8y6ns5zlrc91c6a74xpyxjwvzl2y6"; + }; + } + + { + goPackagePath = "github.com/kr/text"; + fetch = { + type = "git"; + url = "https://github.com/kr/text"; + rev = "v0.1.0"; + sha256 = "1gm5bsl01apvc84bw06hasawyqm4q84vx1pm32wr9jnd7a8vjgj1"; + }; + } + + { + goPackagePath = "github.com/nbutton23/zxcvbn-go"; + fetch = { + type = "git"; + url = "https://github.com/nbutton23/zxcvbn-go"; + rev = "a22cb81b2ecd"; + sha256 = "0hm16vc7xrw0cqla6xcn59bb7n2sa0j8rkniywn5dqnbrpza12cd"; + }; + } + + { + goPackagePath = "github.com/onsi/ginkgo"; + fetch = { + type = "git"; + url = "https://github.com/onsi/ginkgo"; + rev = "11459a886d9c"; + sha256 = "1nswc1fnrrs792qbix05h91bilj8rr3wxmxgwi97p2gjk0r292zh"; + }; + } + + { + goPackagePath = "github.com/onsi/gomega"; + fetch = { + type = "git"; + url = "https://github.com/onsi/gomega"; + rev = "dcabb60a477c"; + sha256 = "1775lv5jbsgv3ghq5v2827slqlhqdadrzc1nkpq4y0hdv2qzrgkm"; + }; + } + + { + goPackagePath = "github.com/pmezard/go-difflib"; + fetch = { + type = "git"; + url = "https://github.com/pmezard/go-difflib"; + rev = "v1.0.0"; + sha256 = "0c1cn55m4rypmscgf0rrb88pn58j3ysvc2d0432dp3c6fqg6cnzw"; + }; + } + + { + goPackagePath = "github.com/ryanuber/go-glob"; + fetch = { + type = "git"; + url = "https://github.com/ryanuber/go-glob"; + rev = "256dc444b735"; + sha256 = "07rsd7hranghwc68ib0r2zxd9d5djanzjvd84j9dgj3wqsyg5mi2"; + }; + } + + { + goPackagePath = "github.com/stretchr/testify"; + fetch = { + type = "git"; + url = "https://github.com/stretchr/testify"; + rev = "v1.2.2"; + sha256 = "0dlszlshlxbmmfxj5hlwgv3r22x0y1af45gn1vd198nvvs3pnvfs"; + }; + } + + { + goPackagePath = "golang.org/x/net"; + fetch = { + type = "git"; + url = "https://go.googlesource.com/net"; + rev = "8351a756f30f"; + sha256 = "0b6m579i3wrx1m69mqkdng5gjfssprxx0pg45kzrdi68sh0zr5d1"; + }; + } + + { + goPackagePath = "golang.org/x/sync"; + fetch = { + type = "git"; + url = "https://go.googlesource.com/sync"; + rev = "1d60e4601c6f"; + sha256 = "046jlanz2lkxq1r57x9bl6s4cvfqaic6p2xybsj8mq1120jv4rs6"; + }; + } + + { + goPackagePath = "golang.org/x/sys"; + fetch = { + type = "git"; + url = "https://go.googlesource.com/sys"; + rev = "164713f0dfce"; + sha256 = "1qn9vvyqsaaj0az0rbilzc4pfv9sl4vh78c2g37yya5gcdnarh3w"; + }; + } + + { + goPackagePath = "golang.org/x/text"; + fetch = { + type = "git"; + url = "https://go.googlesource.com/text"; + rev = "1cbadb444a80"; + sha256 = "0ih9ysagh4ylj08393497sscf3yziybc6acg4mrh0wa7mld75j56"; + }; + } + + { + goPackagePath = "golang.org/x/tools"; + fetch = { + type = "git"; + url = "https://go.googlesource.com/tools"; + rev = "e531a2a1c15f"; + sha256 = "0740w56nmjqdj7ld1h3gpcpi3x8n81bdx0pp267rz9hmwkrb2s1c"; + }; + } + + { + goPackagePath = "gopkg.in/check.v1"; + fetch = { + type = "git"; + url = "https://gopkg.in/check.v1"; + rev = "788fd7840127"; + sha256 = "0v3bim0j375z81zrpr5qv42knqs0y2qv2vkjiqi5axvb78slki1a"; + }; + } + + { + goPackagePath = "gopkg.in/yaml.v2"; + fetch = { + type = "git"; + url = "https://gopkg.in/yaml.v2"; + rev = "eb3733d160e7"; + sha256 = "1srhvcaa9db3a6xj29mkjr5kg33y71pclrlx4vcwz5m1lgb5c7q6"; + }; + } +] diff --git a/pkgs/development/tools/iferr/default.nix b/pkgs/development/tools/iferr/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..e2aebe9b2dc20190e36a73d81f5ebd3592b07d9d --- /dev/null +++ b/pkgs/development/tools/iferr/default.nix @@ -0,0 +1,28 @@ +{ buildGoPackage +, lib +, fetchFromGitHub +}: + +buildGoPackage rec { + name = "iferr-unstable-${version}"; + version = "2018-06-15"; + rev = "bb332a3b1d9129b6486c7ddcb7030c11b05cfc88"; + + goPackagePath = "github.com/koron/iferr"; + + src = fetchFromGitHub { + inherit rev; + + owner = "koron"; + repo = "iferr"; + sha256 = "1nyqy1sgq2afiama4wy7wap8s03c0hiwwa0f6kwq3y59097rfc0c"; + }; + + meta = with lib; { + description = ''Generate "if err != nil {" block''; + homepage = https://github.com/koron/iferr; + license = licenses.mit; + maintainers = with maintainers; [ kalbasit ]; + platforms = platforms.linux ++ platforms.darwin; + }; +} diff --git a/pkgs/development/tools/impl/default.nix b/pkgs/development/tools/impl/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..69bbf8afe5ac13bd3e8f7d715d636b77f509bbfc --- /dev/null +++ b/pkgs/development/tools/impl/default.nix @@ -0,0 +1,30 @@ +{ buildGoPackage +, lib +, fetchFromGitHub +}: + +buildGoPackage rec { + name = "impl-unstable-${version}"; + version = "2018-02-27"; + rev = "3d0f908298c49598b6aa84f101c69670e15d1d03"; + + goPackagePath = "github.com/josharian/impl"; + + src = fetchFromGitHub { + inherit rev; + + owner = "josharian"; + repo = "impl"; + sha256 = "0xpip20x5vclrl0by1760lg73v6lj6nmkbiazlskyvpkw44h8a7c"; + }; + + goDeps = ./deps.nix; + + meta = with lib; { + description = "impl generates method stubs for implementing an interface."; + homepage = https://github.com/josharian/impl; + license = licenses.mit; + maintainers = with maintainers; [ kalbasit ]; + platforms = platforms.linux ++ platforms.darwin; + }; +} diff --git a/pkgs/development/tools/impl/deps.nix b/pkgs/development/tools/impl/deps.nix new file mode 100644 index 0000000000000000000000000000000000000000..3477aaed6075ef79908db4af3044a82254b64e53 --- /dev/null +++ b/pkgs/development/tools/impl/deps.nix @@ -0,0 +1,11 @@ +[ + { + goPackagePath = "golang.org/x/tools"; + fetch = { + type = "git"; + url = "https://go.googlesource.com/tools"; + rev = "96e9e165b75e735822645eff82850b08c377be36"; + sha256 = "1zj9ck5sg9b0pphxybmvxf64hhcap7v7j37fx3v5aknf18crjjdg"; + }; + } +] diff --git a/pkgs/development/tools/ineffassign/default.nix b/pkgs/development/tools/ineffassign/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..10e5c61025ab753a35b9e865adb0ba2322d0e05c --- /dev/null +++ b/pkgs/development/tools/ineffassign/default.nix @@ -0,0 +1,29 @@ +{ buildGoPackage +, lib +, fetchFromGitHub +}: + +buildGoPackage rec { + name = "ineffassign-unstable-${version}"; + version = "2018-09-09"; + rev = "1003c8bd00dc2869cb5ca5282e6ce33834fed514"; + + goPackagePath = "github.com/gordonklaus/ineffassign"; + excludedPackages = ''testdata''; + + src = fetchFromGitHub { + inherit rev; + + owner = "gordonklaus"; + repo = "ineffassign"; + sha256 = "1rkzqvd3z03vq8q8qi9cghvgggsf02ammj9wq8jvpnx6b2sd16nd"; + }; + + meta = with lib; { + description = "Detect ineffectual assignments in Go code."; + homepage = https://github.com/gordonklaus/ineffassign; + license = licenses.mit; + maintainers = with maintainers; [ kalbasit ]; + platforms = platforms.linux ++ platforms.darwin; + }; +} diff --git a/pkgs/development/tools/interfacer/default.nix b/pkgs/development/tools/interfacer/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..274ced0b37cd5a4312af40009e89d2967e805f25 --- /dev/null +++ b/pkgs/development/tools/interfacer/default.nix @@ -0,0 +1,31 @@ +{ buildGoPackage +, lib +, fetchFromGitHub +}: + +buildGoPackage rec { + name = "interfacer-unstable-${version}"; + version = "2018-08-31"; + rev = "c20040233aedb03da82d460eca6130fcd91c629a"; + + goPackagePath = "mvdan.cc/interfacer"; + excludedPackages = ''check/testdata''; + + src = fetchFromGitHub { + inherit rev; + + owner = "mvdan"; + repo = "interfacer"; + sha256 = "0cx4m74mvn200360pmsqxx4z0apk9fcknwwqh8r94zd3jfv4akq2"; + }; + + goDeps = ./deps.nix; + + meta = with lib; { + description = "A linter that suggests interface types."; + homepage = https://github.com/mvdan/interfacer; + license = licenses.bsd3; + maintainers = with maintainers; [ kalbasit ]; + platforms = platforms.linux ++ platforms.darwin; + }; +} diff --git a/pkgs/development/tools/interfacer/deps.nix b/pkgs/development/tools/interfacer/deps.nix new file mode 100644 index 0000000000000000000000000000000000000000..6810950878be5af606fd12a2a47b7b983d954836 --- /dev/null +++ b/pkgs/development/tools/interfacer/deps.nix @@ -0,0 +1,29 @@ +[ + { + goPackagePath = "github.com/kisielk/gotool"; + fetch = { + type = "git"; + url = "https://github.com/kisielk/gotool"; + rev = "80517062f582ea3340cd4baf70e86d539ae7d84d"; + sha256 = "14af2pa0ssyp8bp2mvdw184s5wcysk6akil3wzxmr05wwy951iwn"; + }; + } + { + goPackagePath = "golang.org/x/tools"; + fetch = { + type = "git"; + url = "https://go.googlesource.com/tools"; + rev = "96e9e165b75e735822645eff82850b08c377be36"; + sha256 = "1zj9ck5sg9b0pphxybmvxf64hhcap7v7j37fx3v5aknf18crjjdg"; + }; + } + { + goPackagePath = "mvdan.cc/lint"; + fetch = { + type = "git"; + url = "https://github.com/mvdan/lint"; + rev = "adc824a0674b99099789b6188a058d485eaf61c0"; + sha256 = "17mi2rvkg9kzv1shxcyawzcj4jj3v738d1j82fp4yygx859yvr8r"; + }; + } +] diff --git a/pkgs/development/tools/jq/darwin-strptime-test.patch b/pkgs/development/tools/jq/darwin-strptime-test.patch deleted file mode 100644 index 4ea83fc164a3584f9ea5481a485bbbf251e92a23..0000000000000000000000000000000000000000 --- a/pkgs/development/tools/jq/darwin-strptime-test.patch +++ /dev/null @@ -1,16 +0,0 @@ -diff --git a/tests/jq.test b/tests/jq.test -index 4a4018b..f5aa7d5 100644 ---- a/src/tests/jq.test -+++ b/src/tests/jq.test -@@ -1144,9 +1144,9 @@ bsearch(4) - [1,2,3] - -4 - --[strptime("%Y-%m-%dT%H:%M:%SZ")|(.,mktime)] -+[strptime("%Y-%m-%dT%H:%M:%SZ")|mktime] - "2015-03-05T23:51:47Z" --[[2015,2,5,23,51,47,4,63],1425599507] -+[1425599507] - - strftime("%Y-%m-%dT%H:%M:%SZ") - [2015,2,5,23,51,47,4,63] diff --git a/pkgs/development/tools/jq/default.nix b/pkgs/development/tools/jq/default.nix index 712ec64bd416e03cb386d99a67df1a6155ac998f..b7b2b5066b9fb9a335a25b87887846e6b2c6386d 100644 --- a/pkgs/development/tools/jq/default.nix +++ b/pkgs/development/tools/jq/default.nix @@ -2,33 +2,17 @@ stdenv.mkDerivation rec { name = "jq-${version}"; - version="1.5"; + version="1.6"; src = fetchurl { url="https://github.com/stedolan/jq/releases/download/jq-${version}/jq-${version}.tar.gz"; - sha256="0g29kyz4ykasdcrb0zmbrp2jqs9kv1wz9swx849i2d1ncknbzln4"; + sha256="1a76f46a652i2g333kfvrl6mp2w7whf6h1yly519izg4y967h9cn"; }; outputs = [ "bin" "doc" "man" "dev" "lib" "out" ]; buildInputs = [ oniguruma ]; - patches = [ - (fetchpatch { - name = "CVE-2015-8863.patch"; - url = https://github.com/stedolan/jq/commit/8eb1367ca44e772963e704a700ef72ae2e12babd.diff; - sha256 = "18bjanzvklfzlzzd690y88725l7iwl4f6wnr429na5pfmircbpvh"; - }) - (fetchpatch { - name = "CVE-2016-4074.patch"; - url = https://patch-diff.githubusercontent.com/raw/stedolan/jq/pull/1214.diff; - sha256 = "1w8bapnyp56di6p9casbfczfn8258rw0z16grydavdjddfm280l9"; - }) - ] - ++ stdenv.lib.optional stdenv.isDarwin ./darwin-strptime-test.patch; - - patchFlags = [ "-p2" ]; # `src` subdir was introduced after v1.5 was released - configureFlags = [ "--bindir=\${bin}/bin" diff --git a/pkgs/development/tools/kexpand/default.nix b/pkgs/development/tools/kexpand/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..a82c21b72e9e22ab260e98c9bbfc5929c38cd31d --- /dev/null +++ b/pkgs/development/tools/kexpand/default.nix @@ -0,0 +1,18 @@ +{ buildGoPackage, fetchFromGitHub }: + +buildGoPackage rec { + name = "kexpand-unstable-2017-05-12"; + + goPackagePath = "github.com/kopeio/kexpand"; + + subPackages = [ "." ]; + + src = fetchFromGitHub { + owner = "kopeio"; + repo = "kexpand"; + rev = "c508a43a4e84410dfd30827603e902148c5c1f3c"; + sha256 = "0946h74lsqnr1106j7i2w2a5jg2bbk831d7prlws4bb2kigfm38p"; + }; + + goDeps = ./deps.nix; +} diff --git a/pkgs/development/tools/kexpand/deps.nix b/pkgs/development/tools/kexpand/deps.nix new file mode 100644 index 0000000000000000000000000000000000000000..c049d9683cceb0f250335065b589058617fa1d70 --- /dev/null +++ b/pkgs/development/tools/kexpand/deps.nix @@ -0,0 +1,63 @@ +# file generated from go.mod using vgo2nix (https://github.com/adisbladis/vgo2nix) +[ + + { + goPackagePath = "github.com/ghodss/yaml"; + fetch = { + type = "git"; + url = "https://github.com/ghodss/yaml"; + rev = "v1.0.0"; + sha256 = "0skwmimpy7hlh7pva2slpcplnm912rp3igs98xnqmn859kwa5v8g"; + }; + } + + { + goPackagePath = "github.com/golang/glog"; + fetch = { + type = "git"; + url = "https://github.com/golang/glog"; + rev = "23def4e6c14b"; + sha256 = "0jb2834rw5sykfr937fxi8hxi2zy80sj2bdn9b3jb4b26ksqng30"; + }; + } + + { + goPackagePath = "github.com/spf13/cobra"; + fetch = { + type = "git"; + url = "https://github.com/spf13/cobra"; + rev = "v0.0.3"; + sha256 = "1q1nsx05svyv9fv3fy6xv6gs9ffimkyzsfm49flvl3wnvf1ncrkd"; + }; + } + + { + goPackagePath = "github.com/spf13/pflag"; + fetch = { + type = "git"; + url = "https://github.com/spf13/pflag"; + rev = "v1.0.3"; + sha256 = "1cj3cjm7d3zk0mf1xdybh0jywkbbw7a6yr3y22x9sis31scprswd"; + }; + } + + { + goPackagePath = "gopkg.in/check.v1"; + fetch = { + type = "git"; + url = "https://gopkg.in/check.v1"; + rev = "20d25e280405"; + sha256 = "0k1m83ji9l1a7ng8a7v40psbymxasmssbrrhpdv2wl4rhs0nc3np"; + }; + } + + { + goPackagePath = "gopkg.in/yaml.v2"; + fetch = { + type = "git"; + url = "https://gopkg.in/yaml.v2"; + rev = "v2.2.1"; + sha256 = "0dwjrs2lp2gdlscs7bsrmyc5yf6mm4fvgw71bzr9mv2qrd2q73s1"; + }; + } +] diff --git a/pkgs/development/tools/maligned/default.nix b/pkgs/development/tools/maligned/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..7e5cbaddd8b365cd0e66abf066c43072d4ed7aa4 --- /dev/null +++ b/pkgs/development/tools/maligned/default.nix @@ -0,0 +1,30 @@ +{ buildGoPackage +, lib +, fetchFromGitHub +}: + +buildGoPackage rec { + name = "maligned-unstable-${version}"; + version = "2018-07-07"; + rev = "6e39bd26a8c8b58c5a22129593044655a9e25959"; + + goPackagePath = "github.com/mdempsky/maligned"; + + src = fetchFromGitHub { + inherit rev; + + owner = "mdempsky"; + repo = "maligned"; + sha256 = "08inr5xjqv9flrlyhqd8ck1q26y5xb6iilz0xkb6bqa4dl5ialhi"; + }; + + goDeps = ./deps.nix; + + meta = with lib; { + description = "Tool to detect Go structs that would take less memory if their fields were sorted."; + homepage = https://github.com/mdempsky/maligned; + license = licenses.bsd3; + maintainers = with maintainers; [ kalbasit ]; + platforms = platforms.linux ++ platforms.darwin; + }; +} diff --git a/pkgs/development/tools/maligned/deps.nix b/pkgs/development/tools/maligned/deps.nix new file mode 100644 index 0000000000000000000000000000000000000000..afe5e50e47bdd4f3b22a7785730e6792f71bfee4 --- /dev/null +++ b/pkgs/development/tools/maligned/deps.nix @@ -0,0 +1,20 @@ +[ + { + goPackagePath = "github.com/kisielk/gotool"; + fetch = { + type = "git"; + url = "https://github.com/kisielk/gotool"; + rev = "80517062f582ea3340cd4baf70e86d539ae7d84d"; + sha256 = "14af2pa0ssyp8bp2mvdw184s5wcysk6akil3wzxmr05wwy951iwn"; + }; + } + { + goPackagePath = "golang.org/x/tools"; + fetch = { + type = "git"; + url = "https://go.googlesource.com/tools"; + rev = "96e9e165b75e735822645eff82850b08c377be36"; + sha256 = "1zj9ck5sg9b0pphxybmvxf64hhcap7v7j37fx3v5aknf18crjjdg"; + }; + } +] diff --git a/pkgs/development/tools/misc/binutils/default.nix b/pkgs/development/tools/misc/binutils/default.nix index 3205366f80ebe661dcedc86616568fc7f418375a..54f9b5e4031f006bf322903ea98cdb551feb487d 100644 --- a/pkgs/development/tools/misc/binutils/default.nix +++ b/pkgs/development/tools/misc/binutils/default.nix @@ -97,7 +97,7 @@ stdenv.mkDerivation rec { then "-Wno-string-plus-int -Wno-deprecated-declarations" else "-static-libgcc"; - hardeningDisable = [ "format" ]; + hardeningDisable = [ "format" ] ++ stdenv.lib.optional stdenv.targetPlatform.isMusl "pie"; # TODO(@Ericson2314): Always pass "--target" and always targetPrefix. configurePlatforms = [ "build" "host" ] ++ stdenv.lib.optional (stdenv.targetPlatform != stdenv.hostPlatform) "target"; diff --git a/pkgs/development/tools/misc/blackmagic/default.nix b/pkgs/development/tools/misc/blackmagic/default.nix index 2974c653acdda4aa129261996996b87d44e921a1..281463528354e0cf99b1aedba56f5f970b483e43 100644 --- a/pkgs/development/tools/misc/blackmagic/default.nix +++ b/pkgs/development/tools/misc/blackmagic/default.nix @@ -1,5 +1,5 @@ { stdenv, lib, fetchFromGitHub -, gcc-arm-embedded, libftdi +, gcc-arm-embedded, binutils-arm-embedded, libftdi , python, pythonPackages }: @@ -17,8 +17,11 @@ stdenv.mkDerivation rec { fetchSubmodules = true; }; + nativeBuildInputs = [ + gcc-arm-embedded binutils-arm-embedded + ]; + buildInputs = [ - gcc-arm-embedded libftdi python pythonPackages.intelhex diff --git a/pkgs/development/tools/misc/cwebbin/default.nix b/pkgs/development/tools/misc/cwebbin/default.nix index a952475b9673cffb996abc80c3bdc3d6c1c01cf5..d8deb75d2d418f90ca7dcff3ec810525c18be949 100644 --- a/pkgs/development/tools/misc/cwebbin/default.nix +++ b/pkgs/development/tools/misc/cwebbin/default.nix @@ -46,5 +46,6 @@ stdenv.mkDerivation rec { description = "Literate Programming in C/C++"; platforms = with platforms; unix; maintainers = with maintainers; [ vrthra ]; + license = licenses.abstyles; }; } diff --git a/pkgs/development/tools/misc/dfu-programmer/default.nix b/pkgs/development/tools/misc/dfu-programmer/default.nix index 1c0f80e1ddd75023a9c37c798223d0c2321f28b0..ba95889b5a800443a2a1abce596d361496562f93 100644 --- a/pkgs/development/tools/misc/dfu-programmer/default.nix +++ b/pkgs/development/tools/misc/dfu-programmer/default.nix @@ -19,6 +19,6 @@ stdenv.mkDerivation rec { description = "A Device Firmware Update based USB programmer for Atmel chips with a USB bootloader"; homepage = http://dfu-programmer.sourceforge.net/; maintainers = [ maintainers.the-kenny ]; - platforms = platforms.linux; + platforms = platforms.unix; }; } diff --git a/pkgs/development/tools/misc/eggdbus/default.nix b/pkgs/development/tools/misc/eggdbus/default.nix index 3b1c70b4ac332f57e48481db49f45c959993a6bf..7c7e5340434308bf773bc4d06b046ce1d31d8612 100644 --- a/pkgs/development/tools/misc/eggdbus/default.nix +++ b/pkgs/development/tools/misc/eggdbus/default.nix @@ -2,18 +2,19 @@ stdenv.mkDerivation rec { name = "eggdbus-0.6"; - + src = fetchurl { url = "https://hal.freedesktop.org/releases/${name}.tar.gz"; sha256 = "118hj63ac65zlg71kydv4607qcg1qpdlql4kvhnwnnhar421jnq4"; }; - + nativeBuildInputs = [ pkgconfig ]; buildInputs = [ glib dbus dbus-glib ]; - meta = { + meta = with stdenv.lib; { homepage = https://hal.freedesktop.org/releases/; description = "D-Bus bindings for GObject"; - platforms = stdenv.lib.platforms.linux; + platforms = platforms.linux; + license = licenses.lgpl2; }; } diff --git a/pkgs/development/tools/misc/gnum4/default.nix b/pkgs/development/tools/misc/gnum4/default.nix index e5ea17841aa649c0ee560d3fd76cc9a65e9790da..12a5b8f2adcf2527f1db27f633f81e26959e405c 100644 --- a/pkgs/development/tools/misc/gnum4/default.nix +++ b/pkgs/development/tools/misc/gnum4/default.nix @@ -37,7 +37,7 @@ stdenv.mkDerivation rec { ''; license = stdenv.lib.licenses.gpl3Plus; - platforms = stdenv.lib.platforms.unix; + platforms = stdenv.lib.platforms.unix ++ stdenv.lib.platforms.windows; }; } diff --git a/pkgs/development/tools/misc/icon-naming-utils/default.nix b/pkgs/development/tools/misc/icon-naming-utils/default.nix index 37bc73172da2dd22ab39a2e50d30268edff88d05..5fd0fe8be2f290e6d83d1a2a396b7966e2a7744b 100644 --- a/pkgs/development/tools/misc/icon-naming-utils/default.nix +++ b/pkgs/development/tools/misc/icon-naming-utils/default.nix @@ -7,7 +7,7 @@ stdenv.mkDerivation rec { url = "http://tango.freedesktop.org/releases/${name}.tar.gz"; sha256 = "071fj2jm5kydlz02ic5sylhmw6h2p3cgrm3gwdfabinqkqcv4jh4"; }; - + buildInputs = [perl XMLSimple librsvg]; postInstall = @@ -20,5 +20,6 @@ stdenv.mkDerivation rec { meta = with stdenv.lib; { homepage = http://tango.freedesktop.org/Standard_Icon_Naming_Specification; platforms = with platforms; linux ++ darwin; + license = licenses.gpl2; }; } diff --git a/pkgs/development/tools/misc/ltrace/default.nix b/pkgs/development/tools/misc/ltrace/default.nix index 15eac37a53a9cdc4852a37d542eda63afa50ccd8..77d4c5771f90eb3d3185ffcde95fdaf9ddd33031 100644 --- a/pkgs/development/tools/misc/ltrace/default.nix +++ b/pkgs/development/tools/misc/ltrace/default.nix @@ -23,6 +23,7 @@ stdenv.mkDerivation rec { meta = with stdenv.lib; { description = "Library call tracer"; homepage = https://www.ltrace.org/; - platforms = stdenv.lib.platforms.linux; + platforms = [ "i686-linux" "x86_64-linux" ]; + license = licenses.gpl2; }; } diff --git a/pkgs/development/tools/misc/pkgconfig/default.nix b/pkgs/development/tools/misc/pkgconfig/default.nix index 1ae8a32b6405f4e2a98f2d7984af8a9fade9b635..81fb7f8b13ffe28fed760b98c21a4daf67944b4c 100644 --- a/pkgs/development/tools/misc/pkgconfig/default.nix +++ b/pkgs/development/tools/misc/pkgconfig/default.nix @@ -39,6 +39,7 @@ stdenv.mkDerivation rec { description = "A tool that allows packages to find out information about other packages"; homepage = http://pkg-config.freedesktop.org/wiki/; platforms = platforms.all; + license = licenses.gpl2Plus; }; } diff --git a/pkgs/development/tools/misc/sqitch/default.nix b/pkgs/development/tools/misc/sqitch/default.nix index 8328433a823f0e4bcdf6cd97636ca72c24d350ef..a077367622eb16da2c5d828f7c01819f2c8460fe 100644 --- a/pkgs/development/tools/misc/sqitch/default.nix +++ b/pkgs/development/tools/misc/sqitch/default.nix @@ -23,5 +23,6 @@ stdenv.mkDerivation { meta = { platforms = stdenv.lib.platforms.unix; + inherit (sqitchModule.meta) license; }; } diff --git a/pkgs/development/tools/misc/strace/default.nix b/pkgs/development/tools/misc/strace/default.nix index 33a46e16a3abf61ea08a56bee290abf4347a8147..e2022156870d3e89c7ef173363b28b6d3ac434d3 100644 --- a/pkgs/development/tools/misc/strace/default.nix +++ b/pkgs/development/tools/misc/strace/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { name = "strace-${version}"; - version = "4.24"; + version = "4.25"; src = fetchurl { url = "https://strace.io/files/${version}/${name}.tar.xz"; - sha256 = "0d061cdzk6a1822ds4wpqxg10ny27mi4i9zjmnsbz8nz3vy5jkhz"; + sha256 = "00f7zagfh3np5gwi0z7hi7zjd7s5nixcaq7z78n87dvhakkgi1fn"; }; depsBuildBuild = [ buildPackages.stdenv.cc ]; diff --git a/pkgs/development/tools/misc/teensy-loader-cli/default.nix b/pkgs/development/tools/misc/teensy-loader-cli/default.nix index d6c5256ca84df33b57b9e29785c8d1ccb2f4a918..91f2a5c58fc25bab8cdcc674ec7a34074a1dbe49 100644 --- a/pkgs/development/tools/misc/teensy-loader-cli/default.nix +++ b/pkgs/development/tools/misc/teensy-loader-cli/default.nix @@ -10,7 +10,7 @@ stdenv.mkDerivation { sha256 = "1a663bv3lvm7bsf2wcaj2c0vpmniak7w5hwix5qgz608bvm2v781"; }; - buildInputs = [ unzip libusb ]; + buildInputs = [ libusb ]; installPhase = '' install -Dm755 teensy_loader_cli $out/bin/teensy-loader-cli @@ -21,6 +21,6 @@ stdenv.mkDerivation { description = "Firmware uploader for the Teensy microcontroller boards"; homepage = https://www.pjrc.com/teensy/; maintainers = with maintainers; [ the-kenny ]; - platforms = platforms.linux; + platforms = platforms.unix; }; } diff --git a/pkgs/development/tools/misc/tie/default.nix b/pkgs/development/tools/misc/tie/default.nix index c73dbfce8f87e6bf55fd12167875a79cc62dcbea..c380243a898b9763a787039ce2a70fdb26646ca4 100644 --- a/pkgs/development/tools/misc/tie/default.nix +++ b/pkgs/development/tools/misc/tie/default.nix @@ -23,5 +23,6 @@ stdenv.mkDerivation rec { description = "Allow multiple web change files"; platforms = with platforms; unix; maintainers = with maintainers; [ vrthra ]; + license = licenses.abstyles; }; } diff --git a/pkgs/development/tools/nailgun/default.nix b/pkgs/development/tools/nailgun/default.nix index 6a34c1c130d981150f92fa9f37fb201d17c0a2ac..07005131fb5e807d6eda69fe2ff1c101f6208d6d 100644 --- a/pkgs/development/tools/nailgun/default.nix +++ b/pkgs/development/tools/nailgun/default.nix @@ -1,39 +1,37 @@ { stdenv, fetchMavenArtifact, fetchFromGitHub, jre, makeWrapper }: let - version = "0.9.1"; + version = "1.0.0"; nailgun-server = fetchMavenArtifact { - groupId = "com.martiansoftware"; + groupId = "com.facebook"; artifactId = "nailgun-server"; inherit version; - sha256 = "09ggkkd1s58jmpc74s6m10d3hyf6bmif31advk66zljbpykgl625"; + sha256 = "1mk8pv0g2xg9m0gsb96plbh6mc24xrlyrmnqac5mlbl4637l4q95"; }; in stdenv.mkDerivation rec { name = "nailgun-${version}"; src = fetchFromGitHub { - owner = "martylamb"; + owner = "facebook"; repo = "nailgun"; - rev = "1ad9ad9d2d17c895144a9ee0e7acb1d3d90fb66f"; - sha256 = "1f8ac5kg7imhix9kqdzwiav1bxh8vljv2hb1mq8yz4rqsrx2r4w3"; + rev = "nailgun-all-v${version}"; + sha256 = "1syyk4ss5vq1zf0ma00svn56lal53ffpikgqgzngzbwyksnfdlh6"; }; - makeFlags = "PREFIX=$(out)"; + makeFlags = [ "PREFIX=$(out)" ]; - buildInputs = [ makeWrapper ]; - - installPhase = '' - install -D ng $out/bin/ng + nativeBuildInputs = [ makeWrapper ]; + postInstall = '' makeWrapper ${jre}/bin/java $out/bin/ng-server \ - --add-flags '-cp ${nailgun-server.jar}:$CLASSPATH com.martiansoftware.nailgun.NGServer' + --add-flags '-classpath ${nailgun-server.jar}:$CLASSPATH com.facebook.nailgun.NGServer' ''; meta = with stdenv.lib; { description = "Client, protocol, and server for running Java programs from the command line without incurring the JVM startup overhead"; - homepage = http://martiansoftware.com/nailgun/; - license = licenses.apsl20; + homepage = http://www.martiansoftware.com/nailgun/; + license = licenses.asl20; platforms = platforms.linux; maintainers = with maintainers; [ volth ]; }; diff --git a/pkgs/development/tools/nrpl/default.nix b/pkgs/development/tools/nrpl/default.nix index d6a357235902a73b948124853b31a5ec08f082c7..234f5a5bfae7296e4f6e38de3b2580bf5d9909fe 100644 --- a/pkgs/development/tools/nrpl/default.nix +++ b/pkgs/development/tools/nrpl/default.nix @@ -25,7 +25,10 @@ stdenv.mkDerivation rec { "-lpcre" ]; - buildPhase = "nim c -d:release nrpl.nim"; + buildPhase = '' + HOME=$TMPDIR + nim c -d:release nrpl.nim + ''; installPhase = "install -Dt $out/bin nrpl"; diff --git a/pkgs/development/tools/ocaml/dune/default.nix b/pkgs/development/tools/ocaml/dune/default.nix index 6d0754da04d09bec81bedc71803a81f7551e8bb5..62493ee83a6fdb42d9c79686643171782454e515 100644 --- a/pkgs/development/tools/ocaml/dune/default.nix +++ b/pkgs/development/tools/ocaml/dune/default.nix @@ -2,10 +2,10 @@ stdenv.mkDerivation rec { name = "dune-${version}"; - version = "1.4.0"; + version = "1.5.1"; src = fetchurl { url = "https://github.com/ocaml/dune/releases/download/${version}/dune-${version}.tbz"; - sha256 = "1fz1jx1d48yb40qan4hw25h8ia55vs7mp94a3rr7cf5gb5ap2zkj"; + sha256 = "1dbf7wwhr7b41g3p24qb9v5r1vvgrk6i9w8f7y7k5k527xy9jk5w"; }; buildInputs = with ocamlPackages; [ ocaml findlib ]; @@ -14,10 +14,14 @@ stdenv.mkDerivation rec { dontAddPrefix = true; - installPhase = "${opaline}/bin/opaline -prefix $out -libdir $OCAMLFIND_DESTDIR"; + installPhase = '' + runHook preInstall + ${opaline}/bin/opaline -prefix $out -libdir $OCAMLFIND_DESTDIR + runHook postInstall + ''; meta = { - homepage = "https://github.com/ocaml/dune"; + homepage = https://github.com/ocaml/dune; description = "A composable build system"; maintainers = [ stdenv.lib.maintainers.vbgl ]; license = stdenv.lib.licenses.mit; diff --git a/pkgs/development/tools/ocaml/merlin/default.nix b/pkgs/development/tools/ocaml/merlin/default.nix index c15970d3f3e629efd9d5453285055b83e434c9f0..e059a5d6a76c32d831d39b63363d49e379448132 100644 --- a/pkgs/development/tools/ocaml/merlin/default.nix +++ b/pkgs/development/tools/ocaml/merlin/default.nix @@ -1,23 +1,17 @@ -{ stdenv, fetchzip, ocaml, findlib, dune, yojson }: +{ stdenv, fetchzip, buildDunePackage, yojson }: -assert stdenv.lib.versionAtLeast ocaml.version "4.02"; - -let +buildDunePackage rec { + pname = "merlin"; version = "3.2.2"; -in - -stdenv.mkDerivation { - name = "merlin-${version}"; + minimumOCamlVersion = "4.02"; src = fetchzip { url = "https://github.com/ocaml/merlin/archive/v${version}.tar.gz"; sha256 = "15ssgmwdxylbwhld9p1cq8x6kadxyhll5bfyf11dddj6cldna3hb"; }; - buildInputs = [ ocaml findlib dune yojson ]; - - inherit (dune) installPhase; + buildInputs = [ yojson ]; meta = with stdenv.lib; { description = "An editor-independent tool to ease the development of programs in OCaml"; diff --git a/pkgs/development/tools/ocaml/ocaml-top/default.nix b/pkgs/development/tools/ocaml/ocaml-top/default.nix index ddea2aa9784b475d46b10b46ae95362052cdc82d..7336439240d5ac47da5192e017e964d6fc4b2176 100644 --- a/pkgs/development/tools/ocaml/ocaml-top/default.nix +++ b/pkgs/development/tools/ocaml/ocaml-top/default.nix @@ -1,33 +1,25 @@ -{ stdenv, fetchzip, ncurses -, ocamlPackages -, dune -}: +{ stdenv, fetchzip, ncurses, ocamlPackages }: -stdenv.mkDerivation rec { +with ocamlPackages; buildDunePackage rec { + pname = "ocaml-top"; version = "1.1.5"; - name = "ocaml-top-${version}"; + src = fetchzip { url = "https://github.com/OCamlPro/ocaml-top/archive/${version}.tar.gz"; sha256 = "1d4i6aanrafgrgk4mh154k6lkwk0b6mh66rykz33awlf5pfqd8yv"; }; - buildInputs = [ ncurses dune ] - ++ (with ocamlPackages; [ ocaml ocp-build findlib lablgtk ocp-index ]); + buildInputs = [ ncurses ocp-build lablgtk ocp-index ]; configurePhase = '' export TERM=xterm ocp-build -init ''; - buildPhase = "jbuilder build"; - - inherit (dune) installPhase; - meta = { homepage = https://www.typerex.org/ocaml-top.html; license = stdenv.lib.licenses.gpl3; description = "A simple cross-platform OCaml code editor built for top-level evaluation"; - platforms = ocamlPackages.ocaml.meta.platforms or []; maintainers = with stdenv.lib.maintainers; [ vbgl ]; }; } diff --git a/pkgs/development/tools/ocaml/ocamlformat/default.nix b/pkgs/development/tools/ocaml/ocamlformat/default.nix index e0b744c835930cd8509667d5ad9e403dc49682a1..694f4b6e89a066794024ec24aedefb3534759800 100644 --- a/pkgs/development/tools/ocaml/ocamlformat/default.nix +++ b/pkgs/development/tools/ocaml/ocamlformat/default.nix @@ -1,15 +1,10 @@ -{ stdenv, fetchFromGitHub, ocamlPackages, dune }: +{ stdenv, fetchFromGitHub, ocamlPackages }: -with ocamlPackages; - -if !stdenv.lib.versionAtLeast ocaml.version "4.05" -then throw "ocamlformat is not available for OCaml ${ocaml.version}" -else - -stdenv.mkDerivation rec { - version = "0.8"; +with ocamlPackages; buildDunePackage rec { pname = "ocamlformat"; - name = "${pname}-${version}"; + version = "0.8"; + + minimumOCamlVersion = "4.05"; src = fetchFromGitHub { owner = "ocaml-ppx"; @@ -19,9 +14,6 @@ stdenv.mkDerivation rec { }; buildInputs = [ - ocaml - dune - findlib base cmdliner fpath @@ -34,17 +26,10 @@ stdenv.mkDerivation rec { tools/gen_version.sh src/Version.ml version ''; - buildPhase = '' - dune build -p ocamlformat - ''; - - inherit (dune) installPhase; - meta = { - homepage = "https://github.com/ocaml-ppx/ocamlformat"; + inherit (src.meta) homepage; description = "Auto-formatter for OCaml code"; maintainers = [ stdenv.lib.maintainers.Zimmi48 ]; license = stdenv.lib.licenses.mit; - inherit (ocamlPackages.ocaml.meta) platforms; }; } diff --git a/pkgs/development/tools/parse-cli-bin/default.nix b/pkgs/development/tools/parse-cli-bin/default.nix index 9424196cf466a33ac3a18afb0a4b017c47f2ebab..616a2049c778b35cbf4824f4e4c2e060fadabc7e 100644 --- a/pkgs/development/tools/parse-cli-bin/default.nix +++ b/pkgs/development/tools/parse-cli-bin/default.nix @@ -13,6 +13,7 @@ stdenv.mkDerivation rec { description = "Parse Command Line Interface"; homepage = "https://parse.com"; platforms = platforms.linux; + license = licenses.bsd3; }; phases = "installPhase"; @@ -22,4 +23,4 @@ stdenv.mkDerivation rec { cp "$src" "$out/bin/parse" chmod +x "$out/bin/parse" ''; -} \ No newline at end of file +} diff --git a/pkgs/development/tools/parsing/peg/default.nix b/pkgs/development/tools/parsing/peg/default.nix index 3a273e1ddbfaf55e1e344e234c2026399aed9ffc..5b8b16ef192220b868755ae62218abfc90a2360a 100644 --- a/pkgs/development/tools/parsing/peg/default.nix +++ b/pkgs/development/tools/parsing/peg/default.nix @@ -10,9 +10,9 @@ stdenv.mkDerivation rec { preBuild="makeFlagsArray+=( PREFIX=$out )"; - meta = { + meta = with stdenv.lib; { homepage = http://piumarta.com/software/peg/; - platforms = stdenv.lib.platforms.all; - maintainers = [ ]; + platforms = platforms.all; + license = licenses.mit; }; } diff --git a/pkgs/development/tools/pyre/default.nix b/pkgs/development/tools/pyre/default.nix index 99e53610c01c4a1bfd7521665e310707e697f60e..382e733cb98bb1858cf243399726d4f5d0bebd67 100644 --- a/pkgs/development/tools/pyre/default.nix +++ b/pkgs/development/tools/pyre/default.nix @@ -1,9 +1,15 @@ { stdenv, fetchFromGitHub, ocamlPackages, makeWrapper, writeScript -, dune, python3, rsync, fetchpatch }: +, dune, python3, rsync, fetchpatch, buck }: let # Manually set version - the setup script requires # hg and git + keeping the .git directory around. - pyre-version = "0.0.14"; + pyre-version = "0.0.17"; # also change typeshed revision below with $pyre-src/.typeshed-version + pyre-src = fetchFromGitHub { + owner = "facebook"; + repo = "pyre-check"; + rev = "v${pyre-version}"; + sha256 = "0y86a3g5xbgh0byksyx5jw7yq7w840x85dhz9inz6mkg5j06mcis"; + }; versionFile = writeScript "version.ml" '' cat > "./version.ml" < dune cp ${versionFile} ./scripts/generate-version-number.sh @@ -77,20 +77,18 @@ let description = "A performant type-checker for Python 3"; homepage = https://pyre-check.org; license = licenses.mit; - platforms = with platforms; linux; + platforms = ocamlPackages.ocaml.meta.platforms; maintainers = with maintainers; [ teh ]; }; }; typeshed = stdenv.mkDerivation { name = "typeshed"; - # typeshed doesn't have versions, it seems to be synchronized with - # mypy relases. I'm assigning a random version here (same as pyre). version = pyre-version; src = fetchFromGitHub { owner = "python"; repo = "typeshed"; - rev = "a08c6ea"; - sha256 = "0wy8yh43vhyyc4g7iqnmlj66kz5in02y5qc0c4jdckhpa3mchaqk"; + rev = "bc3f9fe1d3c43b00c04cedb23e0eeebc9e1734b6"; + sha256 = "06b2kj4n49h4sgi8hn5kalmir8llhanfdc7f1924cxvrkj5ry94b"; }; phases = [ "unpackPhase" "installPhase" ]; installPhase = "cp -r $src $out"; @@ -98,19 +96,8 @@ typeshed = stdenv.mkDerivation { in python3.pkgs.buildPythonApplication rec { pname = "pyre-check"; version = pyre-version; - src = fetchFromGitHub { - owner = "facebook"; - repo = "pyre-check"; - rev = "v${pyre-version}"; - sha256 = "0ig7bx2kfn2kbxw74wysh5365yp5gyby42l9l29iclrzdghgk32l"; - }; - patches = [ - (fetchpatch { - url = "https://github.com/facebook/pyre-check/commit/b473d2ed9fc11e7c1cd0c7b8c42f521e5cdc2003.patch"; - sha256 = "05xvyp7j4n6z92bxf64rxfq5pvaadxgx1c8c5qziy75vdz72lkcy"; - }) - ./pyre-bdist-wheel.patch - ]; + src = pyre-src; + patches = [ ./pyre-bdist-wheel.patch ]; # The build-pypi-package script does some funky stuff with build # directories - easier to patch it a bit than to replace it @@ -119,15 +106,21 @@ in python3.pkgs.buildPythonApplication rec { mkdir ./build substituteInPlace scripts/build-pypi-package.sh \ --replace 'NIX_BINARY_FILE' '${pyre-bin}/bin/pyre.bin' \ - --replace 'BUILD_ROOT="$(mktemp -d)"' "BUILD_ROOT=$(pwd)/build" + --replace 'BUILD_ROOT="$(mktemp -d)"' "BUILD_ROOT=$PWD/build" + substituteInPlace client/buck.py \ + --replace '"buck"' '"${buck}/bin/buck"' + substituteInPlace client/tests/buck_test.py \ + --replace '"buck"' '"${buck}/bin/buck"' ''; - buildInputs = [ pyre-bin rsync ]; + buildInputs = [ pyre-bin ]; + nativeBuildInputs = [ rsync ]; # only required for build-pypi-package.sh propagatedBuildInputs = with python3.pkgs; [ docutils typeshed ]; buildPhase = '' bash scripts/build-pypi-package.sh --version ${pyre-version} --bundle-typeshed ${typeshed} cp -r build/dist dist ''; - - doCheck = false; # can't open file 'nix_run_setup': + checkPhase = '' + bash scripts/run-python-tests.sh + ''; } diff --git a/pkgs/development/tools/rdocker/default.nix b/pkgs/development/tools/rdocker/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..a5683e7a953d4b92d7318b0ba3881db5a6a5d014 --- /dev/null +++ b/pkgs/development/tools/rdocker/default.nix @@ -0,0 +1,32 @@ +{ stdenv, fetchFromGitHub, makeWrapper, openssh }: + +stdenv.mkDerivation rec { + name = "rdocker-${version}"; + version = "unstable-2018-07-17"; + + src = fetchFromGitHub { + owner = "dvddarias"; + repo = "rdocker"; + rev = "949377de0154ade2d28c6d4c4ec33b65ea813b5a"; + sha256 = "1mwg9zh144q4fqk9016v2d347vzch8sxlixaxrz0ci9dxvs6ibd4"; + }; + + nativeBuildInputs = [ makeWrapper ]; + + installPhase = '' + install -Dm755 rdocker.sh $out/bin/rdocker + ''; + + postInstall = '' + wrapProgram $out/bin/rdocker \ + --prefix PATH : ${stdenv.lib.makeBinPath [ openssh ]} + ''; + + meta = with stdenv.lib; { + description = "Securely control a remote docker daemon CLI using ssh forwarding, no SSL setup needed"; + homepage = https://github.com/dvddarias/rdocker; + maintainers = [ stdenv.lib.maintainers.pneumaticat ]; + license = licenses.mit; + platforms = platforms.unix; + }; +} diff --git a/pkgs/development/tools/reftools/default.nix b/pkgs/development/tools/reftools/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..6ef724022e8cd91dabf0ef71d72e6070dc2f0306 --- /dev/null +++ b/pkgs/development/tools/reftools/default.nix @@ -0,0 +1,29 @@ +{ buildGoPackage +, lib +, fetchFromGitHub +}: + +buildGoPackage rec { + name = "reftools-unstable-${version}"; + version = "2018-09-14"; + rev = "654d0ba4f96d62286ca33cd46f7674b84f76d399"; + + goPackagePath = "github.com/davidrjenni/reftools"; + excludedPackages = "\\(cmd/fillswitch/test-fixtures\\)"; + + src = fetchFromGitHub { + inherit rev; + + owner = "davidrjenni"; + repo = "reftools"; + sha256 = "12y2h1h15xadc8pa3xsj11hpdxz5dss6k7xaa4h1ifkvnasjp5w2"; + }; + + meta = with lib; { + description = "reftools - refactoring tools for Go"; + homepage = https://github.com/davidrjenni/reftools; + license = licenses.bsd2; + maintainers = with maintainers; [ kalbasit ]; + platforms = platforms.linux ++ platforms.darwin; + }; +} diff --git a/pkgs/development/tools/rust/cargo-asm/default.nix b/pkgs/development/tools/rust/cargo-asm/default.nix index ca793bf49080d1918d0bba2e91fd9c107f21fe36..246f5b18843c29e6e83677e88cf46622fd832739 100644 --- a/pkgs/development/tools/rust/cargo-asm/default.nix +++ b/pkgs/development/tools/rust/cargo-asm/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchFromGitHub, rustPlatform }: +{ stdenv, fetchFromGitHub, rustPlatform, Security }: rustPlatform.buildRustPackage rec { name = "cargo-asm-${version}"; @@ -13,6 +13,8 @@ rustPlatform.buildRustPackage rec { cargoSha256 = "1m2j6i8hc8isdlj77gv9m6sk6q0x3bvzpva2k16g27i1ngy1989b"; + buildInputs = stdenv.lib.optional stdenv.isDarwin Security; + # Test checks against machine code output, which fails with some # LLVM/compiler versions. doCheck = false; diff --git a/pkgs/development/tools/rust/pyo3-pack/default.nix b/pkgs/development/tools/rust/pyo3-pack/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..05c57e46b893a67faed5a8c35df41629ffbe90a9 --- /dev/null +++ b/pkgs/development/tools/rust/pyo3-pack/default.nix @@ -0,0 +1,35 @@ +{ stdenv, fetchFromGitHub, rustPlatform, dbus, gmp, openssl, pkgconfig +, darwin }: + +let + inherit (darwin.apple_sdk.frameworks) Security; +in rustPlatform.buildRustPackage rec { + name = "pyo3-pack-${version}"; + version = "0.3.8"; + + src = fetchFromGitHub { + owner = "PyO3"; + repo = "pyo3-pack"; + rev = "v${version}"; + sha256 = "14343209w7wphkqh7pnw08pah09spjbwhk6l548g9ivra057gwaz"; + }; + + cargoSha256 = "0n7z9p3v92ijqc2ix60wi74as5rql61k5qbqi8b1b02b71xmsp7j"; + + nativeBuildInputs = [ pkgconfig ]; + + buildInputs = [ gmp openssl ] + ++ stdenv.lib.optional stdenv.isDarwin Security + ++ stdenv.lib.optional stdenv.isLinux dbus; + + # Requires network access, fails in sandbox. + doCheck = false; + + meta = with stdenv.lib; { + description = "Build and publish crates with pyo3 bindings as python packages"; + homepage = https://github.com/PyO3/pyo3-pack; + license = licenses.mit; + maintainers = [ maintainers.danieldk ]; + platforms = platforms.all; + }; +} diff --git a/pkgs/development/tools/rust/racer/default.nix b/pkgs/development/tools/rust/racer/default.nix index 7be1a9777c025487fcdd8042d78033b89eb8ed62..8474f99bc8b9a6c473442f153658df0fe4e2d2ae 100644 --- a/pkgs/development/tools/rust/racer/default.nix +++ b/pkgs/development/tools/rust/racer/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchFromGitHub, rustPlatform, makeWrapper, rustup, substituteAll }: +{ stdenv, fetchFromGitHub, rustPlatform, makeWrapper, substituteAll }: rustPlatform.buildRustPackage rec { name = "racer-${version}"; @@ -13,8 +13,7 @@ rustPlatform.buildRustPackage rec { cargoSha256 = "1j3fviimdxn6xa75z0l9wkgdnznp8q20jjs42mql6ql782dga5lk"; - # rustup is required for test - buildInputs = [ makeWrapper rustup ]; + buildInputs = [ makeWrapper ]; preCheck = '' export RUST_SRC_PATH="${rustPlatform.rustcSrc}" diff --git a/pkgs/development/tools/selenium/chromedriver/default.nix b/pkgs/development/tools/selenium/chromedriver/default.nix index b19bd67c307f37d50c0829f907ec94c5cd220473..4ba5abc65e3032c997274686c31fb482a2a5b001 100644 --- a/pkgs/development/tools/selenium/chromedriver/default.nix +++ b/pkgs/development/tools/selenium/chromedriver/default.nix @@ -6,7 +6,7 @@ let allSpecs = { "x86_64-linux" = { system = "linux64"; - sha256 = "10phyz7ffzzx5ysbpyidssvwjdrcyszxf3lnba8qsrcajzm21nff"; + sha256 = "0x45d2fq01w5v28vipvl4g37ld7d9m8rij9dnwq2zcvyz0rfdfmk"; }; "x86_64-darwin" = { @@ -28,7 +28,7 @@ let in stdenv.mkDerivation rec { name = "chromedriver-${version}"; - version = "2.42"; + version = "2.43"; src = fetchurl { url = "https://chromedriver.storage.googleapis.com/${version}/chromedriver_${spec.system}.zip"; diff --git a/pkgs/development/tools/sigrok-cli/default.nix b/pkgs/development/tools/sigrok-cli/default.nix index 3d8027a1299465de8faef64f00ab97da18df7c4f..dd0fa2461d89b60f3f71a52848cae877e498e57b 100644 --- a/pkgs/development/tools/sigrok-cli/default.nix +++ b/pkgs/development/tools/sigrok-cli/default.nix @@ -1,11 +1,11 @@ { stdenv, fetchurl, pkgconfig, glib, libsigrok, libsigrokdecode }: stdenv.mkDerivation rec { - name = "sigrok-cli-0.7.0"; + name = "sigrok-cli-0.7.1"; src = fetchurl { url = "https://sigrok.org/download/source/sigrok-cli/${name}.tar.gz"; - sha256 = "072ylscp0ppgii1k5j07hhv7dfmni4vyhxnsvxmgqgfyq9ldjsan"; + sha256 = "15vpn1psriadcbl6v9swwgws7dva85ld03yv6g1mgm27kx11697m"; }; nativeBuildInputs = [ pkgconfig ]; diff --git a/pkgs/development/tools/simavr/default.nix b/pkgs/development/tools/simavr/default.nix index b009d5ed601bd2425da1eca93bd47909205117e6..e28aad40ef47a4aba9ff52eaa8c17b4719eb8c13 100644 --- a/pkgs/development/tools/simavr/default.nix +++ b/pkgs/development/tools/simavr/default.nix @@ -1,4 +1,5 @@ -{ stdenv, fetchFromGitHub, avrbinutils, avrgcc, avrlibc, libelf, which, git, pkgconfig, freeglut +{ stdenv, fetchFromGitHub, libelf, which, git, pkgconfig, freeglut +, avrbinutils, avrgcc, avrlibc , libGLU_combined }: stdenv.mkDerivation rec { @@ -15,14 +16,10 @@ stdenv.mkDerivation rec { # ld: cannot find -lsimavr enableParallelBuilding = false; - preConfigure = '' - substituteInPlace Makefile.common --replace "-I../simavr/sim/avr -I../../simavr/sim/avr" \ - "-I${avrlibc}/avr/include -L${avrlibc}/avr/lib/avr5 -B${avrlibc}/avr/lib -I../simavr/sim/avr -I../../simavr/sim/avr" - ''; buildFlags = "AVR_ROOT=${avrlibc}/avr SIMAVR_VERSION=${version}"; installFlags = buildFlags + " DESTDIR=$(out)"; - + # Hack to avoid TMPDIR in RPATHs. preFixup = ''rm -rf "$(pwd)" && mkdir "$(pwd)" ''; @@ -31,8 +28,8 @@ stdenv.mkDerivation rec { patchelf --set-rpath "$(patchelf --print-rpath "$target"):$out/lib" "$target" ''; - nativeBuildInputs = [ pkgconfig ]; - buildInputs = [ which git avrbinutils avrgcc avrlibc libelf freeglut libGLU_combined ]; + nativeBuildInputs = [ which git pkgconfig avrgcc avrbinutils ]; + buildInputs = [ libelf freeglut libGLU_combined ]; meta = with stdenv.lib; { description = "A lean and mean Atmel AVR simulator"; @@ -43,4 +40,3 @@ stdenv.mkDerivation rec { }; } - diff --git a/pkgs/development/tools/skopeo/default.nix b/pkgs/development/tools/skopeo/default.nix index 0e3a9706d24d9dc5313caba60fcdd0d7bc994e02..7f39376dc06912541a5b8a1ccaabcabfefad7b2a 100644 --- a/pkgs/development/tools/skopeo/default.nix +++ b/pkgs/development/tools/skopeo/default.nix @@ -5,18 +5,18 @@ with stdenv.lib; let - version = "0.1.31"; + version = "0.1.32"; src = fetchFromGitHub { rev = "v${version}"; - owner = "projectatomic"; + owner = "containers"; repo = "skopeo"; - sha256 = "02z46wxhms8yph03ksl7i4hbqy15v3y1r43js9dxn0a45vxkm7lb"; + sha256 = "0pyii4z9xf23lsdx4d3m5pkdyrsi4v1pbjj8l7fjgyfv8ncrjyn8"; }; defaultPolicyFile = runCommand "skopeo-default-policy.json" {} "cp ${src}/default-policy.json $out"; - goPackagePath = "github.com/projectatomic/skopeo"; + goPackagePath = "github.com/containers/skopeo"; in buildGoPackage rec { @@ -32,8 +32,8 @@ buildGoPackage rec { buildFlagsArray = '' -ldflags= - -X github.com/projectatomic/skopeo/vendor/github.com/containers/image/signature.systemDefaultPolicyPath=${defaultPolicyFile} - -X github.com/projectatomic/skopeo/vendor/github.com/containers/image/internal/tmpdir.unixTempDirForBigFiles=/tmp + -X github.com/containers/skopeo/vendor/github.com/containers/image/signature.systemDefaultPolicyPath=${defaultPolicyFile} + -X github.com/containers/skopeo/vendor/github.com/containers/image/internal/tmpdir.unixTempDirForBigFiles=/tmp ''; preBuild = '' diff --git a/pkgs/development/tools/sourcetrail/default.nix b/pkgs/development/tools/sourcetrail/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..2182f8697aab4d7265b7b2ee3072b11f6a7907cd --- /dev/null +++ b/pkgs/development/tools/sourcetrail/default.nix @@ -0,0 +1,75 @@ +{ stdenv, fetchurl, autoPatchelfHook +, icu, zlib, expat, dbus, libheimdal, openssl}: + +stdenv.mkDerivation rec { + name = "sourcetrail-${version}"; + version = "2018.3.55"; + + src = fetchurl { + name = "sourtrail.tar.gz"; + url = "https://www.sourcetrail.com/downloads/${version}/linux/64bit"; + sha256 = "6f5fbbecc221e7165ecbf1c4d208e302dade4feea9d43eb3265521efc0a376e2"; + }; + + nativeBuildInputs = [ autoPatchelfHook ]; + buildInputs = [ zlib expat dbus stdenv.cc.cc openssl ]; + + installPhase = '' + runHook preInstall + + mkdir -p $out/bin $out/opt + + mv -v setup/share $out + mv -v data/gui/icon/logo_1024_1024.png $out/share/icons/sourcetrail.png + mv -v data/gui/icon/project_256_256.png $out/share/icons/project-sourcetrail.png + + mkdir -p $out/share/sourcetrail/doc + mv -v README EULA.txt $out/share/sourcetrail/doc + mv -v plugin $out/share/sourcetrail + + cp -rv . $out/opt + + rm $out/opt/lib/libssl.so + rm $out/opt/lib/platforms/{libqeglfs.so,libqwebgl.so} + ln -s ${openssl}/lib/libssl.so $out/opt/lib/libssl.so + + substituteInPlace \ + $out/share/applications/sourcetrail.desktop \ + --replace /usr/bin/ $out/bin/ + + cat < $out/bin/sourcetrail + #! ${stdenv.shell} -e + + # XXX: Sourcetrail somehow copies the initial config files into the home + # directory without write permissions. We currently just copy them + # ourselves to work around this problem. + setup_config() { + local src dst + + [ ! -d ~/.config/sourcetrail ] && mkdir -p ~/.config/sourcetrail + for src in $out/opt/data/fallback/*; do + dst=~/.config/sourcetrail/"\$(basename "\$src")" + if [ ! -e "\$dst" ]; then + cp -r "\$src" "\$dst" + fi + done + + chmod -R u+w ~/.config/sourcetrail + } + + [ -d "\$HOME" ] && setup_config + exec "$out/opt/Sourcetrail.sh" "\$@" + EOF + chmod +x $out/bin/sourcetrail + + runHook postInstall + ''; + + meta = with stdenv.lib; { + homepage = https://www.sourcetrail.com; + description = "A cross-platform source explorer for C/C++ and Java"; + platforms = [ "x86_64-linux" ]; + license = licenses.unfree; + maintainers = with maintainers; [ midchildan ]; + }; +} diff --git a/pkgs/development/tools/tradcpp/default.nix b/pkgs/development/tools/tradcpp/default.nix index 8cde662b14c3813f8991017ca84843f0e1a1ae79..64a97ad00873301df15a73c562566b9ea0a3330b 100644 --- a/pkgs/development/tools/tradcpp/default.nix +++ b/pkgs/development/tools/tradcpp/default.nix @@ -13,9 +13,10 @@ stdenv.mkDerivation { preConfigure = "autoconf"; patches = [ ./tradcpp-configure.patch ]; - meta = { + meta = with stdenv.lib; { description = "A traditional (K&R-style) C macro preprocessor"; - platforms = stdenv.lib.platforms.all; + platforms = platforms.all; + license = licenses.bsd2; }; } diff --git a/pkgs/development/tools/uftrace/default.nix b/pkgs/development/tools/uftrace/default.nix index fa57ce9df21f76169e338db9341365b730389ee8..7d5569b4376b54760d278848c63134c80d0e5408 100644 --- a/pkgs/development/tools/uftrace/default.nix +++ b/pkgs/development/tools/uftrace/default.nix @@ -1,14 +1,14 @@ -{stdenv, fetchFromGitHub }: +{stdenv, fetchFromGitHub}: stdenv.mkDerivation rec { name = "uftrace-${version}"; - version = "0.9"; + version = "0.9.1"; src = fetchFromGitHub { owner = "namhyung"; repo = "uftrace"; - rev = "f0fed0b24a9727ffed04673b62f66baad21a1f99"; - sha256 = "0rn2xwd87qy5ihn5zq9pwq8cs1vfmcqqz0wl70wskkgp2ccsd9x8"; + rev = "v${version}"; + sha256 = "1jb4dp6crvfzxzmi5iflc7p13b7p2v1djyj6smbf9ns4wr515y6b"; }; postUnpack = '' @@ -23,4 +23,3 @@ stdenv.mkDerivation rec { maintainers = [stdenv.lib.maintainers.nthorne]; }; } - diff --git a/pkgs/development/tools/unconvert/default.nix b/pkgs/development/tools/unconvert/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..1e81c5b9f86e75948e18d6aed7976ae272a6f974 --- /dev/null +++ b/pkgs/development/tools/unconvert/default.nix @@ -0,0 +1,31 @@ + +{ buildGoPackage +, lib +, fetchFromGitHub +}: + +buildGoPackage rec { + name = "unconvert-unstable-${version}"; + version = "2018-07-03"; + rev = "1a9a0a0a3594e9363e49545fb6a4e24ac4c68b7b"; + + goPackagePath = "github.com/mdempsky/unconvert"; + + src = fetchFromGitHub { + inherit rev; + + owner = "mdempsky"; + repo = "unconvert"; + sha256 = "1ww5qk1cmdis4ig5mb0b0w7nzrf3734s51plmgdxqsr35y88q4p9"; + }; + + goDeps = ./deps.nix; + + meta = with lib; { + description = "Remove unnecessary type conversions from Go source"; + homepage = https://github.com/mdempsky/unconvert; + license = licenses.bsd3; + maintainers = with maintainers; [ kalbasit ]; + platforms = platforms.linux ++ platforms.darwin; + }; +} diff --git a/pkgs/development/tools/unconvert/deps.nix b/pkgs/development/tools/unconvert/deps.nix new file mode 100644 index 0000000000000000000000000000000000000000..333ec7ca3b15e018e8023c5f82d63c7a9121a447 --- /dev/null +++ b/pkgs/development/tools/unconvert/deps.nix @@ -0,0 +1,29 @@ +[ + { + goPackagePath = "github.com/kisielk/gotool"; + fetch = { + type = "git"; + url = "https://github.com/kisielk/gotool"; + rev = "80517062f582ea3340cd4baf70e86d539ae7d84d"; + sha256 = "14af2pa0ssyp8bp2mvdw184s5wcysk6akil3wzxmr05wwy951iwn"; + }; + } + { + goPackagePath = "golang.org/x/text"; + fetch = { + type = "git"; + url = "https://go.googlesource.com/text"; + rev = "6f44c5a2ea40ee3593d98cdcc905cc1fdaa660e2"; + sha256 = "00mwzxly5isgf0glz7k3k2dkyqkjfc4z55qxajx4lgcp3h8xn9xj"; + }; + } + { + goPackagePath = "golang.org/x/tools"; + fetch = { + type = "git"; + url = "https://go.googlesource.com/tools"; + rev = "96e9e165b75e735822645eff82850b08c377be36"; + sha256 = "1zj9ck5sg9b0pphxybmvxf64hhcap7v7j37fx3v5aknf18crjjdg"; + }; + } +] diff --git a/pkgs/development/tools/vagrant/default.nix b/pkgs/development/tools/vagrant/default.nix index ecc1a2d00946cc86baa3915ea6b7854416347682..74992560f3fc015cbe08ab1b322156bc7169cfee 100644 --- a/pkgs/development/tools/vagrant/default.nix +++ b/pkgs/development/tools/vagrant/default.nix @@ -1,11 +1,11 @@ -{ lib, fetchurl, buildRubyGem, bundlerEnv, ruby, libarchive, writeText }: +{ lib, fetchurl, buildRubyGem, bundlerEnv, ruby, libarchive, writeText, withLibvirt ? true, libvirt, pkgconfig }: let # NOTE: bumping the version and updating the hash is insufficient; # you must use bundix to generate a new gemset.nix in the Vagrant source. - version = "2.1.2"; + version = "2.2.0"; url = "https://github.com/hashicorp/vagrant/archive/v${version}.tar.gz"; - sha256 = "0fb90v43d30whhyjlgb9mmy93ccbpr01pz97kp5hrg3wfd7703b1"; + sha256 = "1wa8l3j6hpy0m0snz7wvfcf0wsjikp22c2z29crpk10f7xl7c56b"; deps = bundlerEnv rec { name = "${pname}-${version}"; @@ -15,7 +15,7 @@ let inherit ruby; gemfile = writeText "Gemfile" ""; lockfile = writeText "Gemfile.lock" ""; - gemset = lib.recursiveUpdate (import ./gemset.nix) { + gemset = lib.recursiveUpdate (import ./gemset.nix) ({ vagrant = { source = { type = "url"; @@ -23,7 +23,7 @@ let }; inherit version; }; - }; + } // lib.optionalAttrs withLibvirt (import ./gemset_libvirt.nix)); }; in buildRubyGem rec { @@ -35,6 +35,8 @@ in buildRubyGem rec { dontBuild = false; src = fetchurl { inherit url sha256; }; + buildInputs = lib.optional withLibvirt [ libvirt pkgconfig ]; + patches = [ ./unofficial-installation-nowarn.patch ./use-system-bundler-version.patch @@ -45,7 +47,12 @@ in buildRubyGem rec { postInstall = '' wrapProgram "$out/bin/vagrant" \ --set GEM_PATH "${deps}/lib/ruby/gems/${ruby.version.libDir}" \ - --prefix PATH ':' "${lib.getBin libarchive}/bin" + --prefix PATH ':' "${lib.getBin libarchive}/bin" \ + ${lib.optionalString withLibvirt '' + --prefix PATH ':' "${pkgconfig}/bin" \ + --prefix PKG_CONFIG_PATH ':' \ + "${lib.makeSearchPath "lib/pkgconfig" [ libvirt ]}" + ''} ''; installCheckPhase = '' diff --git a/pkgs/development/tools/vagrant/gemset.nix b/pkgs/development/tools/vagrant/gemset.nix index 598f5cc67235ab8f3b8544ccfb2ef5f4b6a8cb70..39eeb02ce55c4a7a2c53fe5b3a8ef03aa21af6c0 100644 --- a/pkgs/development/tools/vagrant/gemset.nix +++ b/pkgs/development/tools/vagrant/gemset.nix @@ -70,10 +70,10 @@ ffi = { source = { remotes = ["https://rubygems.org"]; - sha256 = "0zw6pbyvmj8wafdc7l5h7w20zkp1vbr2805ql5d941g2b20pk4zr"; + sha256 = "0jpm2dis1j7zvvy3lg7axz9jml316zrn7s0j59vyq3qr127z0m7q"; type = "gem"; }; - version = "1.9.23"; + version = "1.9.25"; }; gssapi = { dependencies = ["ffi"]; @@ -172,18 +172,18 @@ dependencies = ["mime-types-data"]; source = { remotes = ["https://rubygems.org"]; - sha256 = "0087z9kbnlqhci7fxh9f6il63hj1k02icq2rs0c6cppmqchr753m"; + sha256 = "0fjxy1jm52ixpnv3vg9ld9pr9f35gy0jp66i1njhqjvmnvq0iwwk"; type = "gem"; }; - version = "3.1"; + version = "3.2.2"; }; mime-types-data = { source = { remotes = ["https://rubygems.org"]; - sha256 = "04my3746hwa4yvbx1ranhfaqkgf6vavi1kyijjnw8w3dy37vqhkm"; + sha256 = "07wvp0aw2gjm4njibb70as6rh5hi1zzri5vky1q6jx95h8l56idc"; type = "gem"; }; - version = "3.2016.0521"; + version = "3.2018.0812"; }; multi_json = { source = { @@ -214,10 +214,10 @@ net-ssh = { source = { remotes = ["https://rubygems.org"]; - sha256 = "07c4v97zl1daabmri9zlbzs6yvkl56z1q14bw74d53jdj0c17nhx"; + sha256 = "0qfanf71yv8w7yl9l9wqcy68i2x1ghvnf8m581yy4pl0anfdhqw8"; type = "gem"; }; - version = "4.2.0"; + version = "5.0.2"; }; netrc = { source = { @@ -238,10 +238,10 @@ public_suffix = { source = { remotes = ["https://rubygems.org"]; - sha256 = "0mvzd9ycjw8ydb9qy3daq3kdzqs2vpqvac4dqss6ckk4rfcjc637"; + sha256 = "08q64b5br692dd3v0a9wq9q5dvycc6kmiqmjbdxkxbfizggsvx6l"; type = "gem"; }; - version = "3.0.1"; + version = "3.0.3"; }; rake = { source = { @@ -358,10 +358,10 @@ rubyzip = { source = { remotes = ["https://rubygems.org"]; - sha256 = "06js4gznzgh8ac2ldvmjcmg9v1vg9llm357yckkpylaj6z456zqz"; + sha256 = "1n1lb2sdwh9h27y244hxzg1lrxxg2m53pk1vq7p33bna003qkyrj"; type = "gem"; }; - version = "1.2.1"; + version = "1.2.2"; }; safe_yaml = { source = { @@ -397,19 +397,28 @@ version = "0.0.7.5"; }; vagrant = { - dependencies = ["childprocess" "erubis" "hashicorp-checkpoint" "i18n" "listen" "log4r" "net-scp" "net-sftp" "net-ssh" "rb-kqueue" "rest-client" "ruby_dep" "wdm" "winrm" "winrm-elevated" "winrm-fs"]; + dependencies = ["childprocess" "erubis" "hashicorp-checkpoint" "i18n" "listen" "log4r" "net-scp" "net-sftp" "net-ssh" "rb-kqueue" "rest-client" "ruby_dep" "rubyzip" "vagrant_cloud" "wdm" "winrm" "winrm-elevated" "winrm-fs"]; }; vagrant-spec = { dependencies = ["childprocess" "log4r" "rspec" "thor"]; source = { fetchSubmodules = false; - rev = "9413ab298407114528766efefd1fb1ff24589636"; - sha256 = "1z77m3p6x82hipa7y4i71zafy0rdfajw2vhqdxczjmrlwp0pvisl"; + rev = "abfc34474d122235d56e4c6b6fb5d3e35bedfa90"; + sha256 = "08xy2c82lrxkwjlvrbx1v32968a6psni3952y3knriqgygv2kzbn"; type = "git"; url = "https://github.com/hashicorp/vagrant-spec.git"; }; version = "0.0.1"; }; + vagrant_cloud = { + dependencies = ["rest-client"]; + source = { + remotes = ["https://rubygems.org"]; + sha256 = "0k325a1cblj3jd2av8a6j3xsjjm36g578gpbmxw7h5dbffp49il1"; + type = "gem"; + }; + version = "2.0.1"; + }; wdm = { source = { remotes = ["https://rubygems.org"]; @@ -431,10 +440,10 @@ dependencies = ["builder" "erubis" "gssapi" "gyoku" "httpclient" "logging" "nori" "rubyntlm"]; source = { remotes = ["https://rubygems.org"]; - sha256 = "02lzbixdbjvhmb0byqx9rl9x4xx9pqc8jwm7y6mmp7w7mri72zh6"; + sha256 = "05c1xji4afwxx4vgim5n4nj62zbyppmm67ci3kwi0jjrqaj9y11q"; type = "gem"; }; - version = "2.2.3"; + version = "2.3.0"; }; winrm-elevated = { dependencies = ["winrm" "winrm-fs"]; @@ -449,9 +458,9 @@ dependencies = ["erubis" "logging" "rubyzip" "winrm"]; source = { remotes = ["https://rubygems.org"]; - sha256 = "1i3w2j2rmhjqj8lynca2m1dm1m5fv1x35xwhk3vyr15dn260z56g"; + sha256 = "12g9grzp03knh1nxcicnm93pmlf4r264lhvl5yviyri8swmqlbz5"; type = "gem"; }; - version = "1.2.0"; + version = "1.3.1"; }; } \ No newline at end of file diff --git a/pkgs/development/tools/vagrant/gemset_libvirt.nix b/pkgs/development/tools/vagrant/gemset_libvirt.nix new file mode 100644 index 0000000000000000000000000000000000000000..aeaf42341a879c5f9d7a05405aa50d6dffc9a8e2 --- /dev/null +++ b/pkgs/development/tools/vagrant/gemset_libvirt.nix @@ -0,0 +1,19 @@ +{ + mini_portile2 = { + source = { + remotes = ["https://rubygems.org"]; + sha256 = "0gzfmcywp1da8nzfqsql2zqi648mfnx6qwkig3cv36n9m0yy676y"; + type = "gem"; + }; + version = "2.3.0"; + }; + nokogiri = { + dependencies = ["mini_portile2"]; + source = { + remotes = ["https://rubygems.org"]; + sha256 = "0byyxrazkfm29ypcx5q4syrv126nvjnf7z6bqi01sqkv4llsi4qz"; + type = "gem"; + }; + version = "1.8.5"; + }; +} diff --git a/pkgs/development/tools/xcbuild/default.nix b/pkgs/development/tools/xcbuild/default.nix index 3f7b21be005d5987f47fb25731e9bf9613bf6871..e71375402c70137e4642cbe8107f361a603208be 100644 --- a/pkgs/development/tools/xcbuild/default.nix +++ b/pkgs/development/tools/xcbuild/default.nix @@ -62,5 +62,6 @@ in stdenv.mkDerivation rec { homepage = https://github.com/facebook/xcbuild; platforms = platforms.unix; maintainers = with maintainers; [ copumpkin matthewbauer ]; + license = with licenses; [ bsd2 bsd3 ]; }; } diff --git a/pkgs/development/tools/yarn/default.nix b/pkgs/development/tools/yarn/default.nix index 47a11e1b7f4d7ade5379632f8813a2d0fc48fa4b..e2e115992bc6313af3a30de32897bc27429beb71 100644 --- a/pkgs/development/tools/yarn/default.nix +++ b/pkgs/development/tools/yarn/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { name = "yarn-${version}"; - version = "1.10.1"; + version = "1.12.3"; src = fetchzip { url = "https://github.com/yarnpkg/yarn/releases/download/v${version}/yarn-v${version}.tar.gz"; - sha256 = "0j9y53k0wxgwjvvpbs6rr4nbydg3bn4khcxsrnzyrakym0ihgmr1"; + sha256 = "0izn7lfvfw046qlxdgiiiyqj24sl2yclm6v8bzy8ilsr00csbrm2"; }; buildInputs = [ nodejs ]; @@ -22,7 +22,7 @@ stdenv.mkDerivation rec { homepage = https://yarnpkg.com/; description = "Fast, reliable, and secure dependency management for javascript"; license = licenses.bsd2; - maintainers = [ maintainers.offline ]; + maintainers = [ maintainers.offline maintainers.screendriver ]; platforms = platforms.linux ++ platforms.darwin; }; } diff --git a/pkgs/development/web/mailcatcher/Gemfile.lock b/pkgs/development/web/mailcatcher/Gemfile.lock index 9a4969c11676bf7a8a8381468cc0f3ae7dacb1fa..c953a311077e6e98eb8d6eb1151b6c9572f09f3d 100644 --- a/pkgs/development/web/mailcatcher/Gemfile.lock +++ b/pkgs/development/web/mailcatcher/Gemfile.lock @@ -16,7 +16,7 @@ GEM mime-types (3.1) mime-types-data (~> 3.2015) mime-types-data (3.2016.0521) - rack (1.6.8) + rack (1.6.11) rack-protection (1.5.3) rack sinatra (1.4.8) @@ -40,4 +40,4 @@ DEPENDENCIES mailcatcher BUNDLED WITH - 1.14.4 + 1.16.4 diff --git a/pkgs/development/web/mailcatcher/default.nix b/pkgs/development/web/mailcatcher/default.nix index 49c5c4d81af1da03b2c7aed18e1bd47f7a1890d6..a2fa509232dee87919568cea33f647b13a26c227 100644 --- a/pkgs/development/web/mailcatcher/default.nix +++ b/pkgs/development/web/mailcatcher/default.nix @@ -1,29 +1,11 @@ -{ stdenv, bundlerEnv, ruby, makeWrapper }: +{ lib, bundlerApp }: -stdenv.mkDerivation rec { - name = "mailcatcher-${version}"; +bundlerApp { + pname = "mailcatcher"; + gemdir = ./.; + exes = [ "mailcatcher" "catchmail" ]; - version = (import ./gemset.nix).mailcatcher.version; - - env = bundlerEnv { - name = "${name}-gems"; - - inherit ruby; - - gemdir = ./.; - }; - - buildInputs = [ makeWrapper ]; - - unpackPhase = ":"; - - installPhase = '' - mkdir -p $out/bin - makeWrapper ${env}/bin/mailcatcher $out/bin/mailcatcher - makeWrapper ${env}/bin/catchmail $out/bin/catchmail - ''; - - meta = with stdenv.lib; { + meta = with lib; { description = "SMTP server and web interface to locally test outbound emails"; homepage = https://mailcatcher.me/; license = licenses.mit; diff --git a/pkgs/development/web/mailcatcher/gemset.nix b/pkgs/development/web/mailcatcher/gemset.nix index d9e95454a500fcf26bd5bbdd3287ca1e5c7a9438..75e1336b1c3c524b50be3144687c84af5c0c38cf 100644 --- a/pkgs/development/web/mailcatcher/gemset.nix +++ b/pkgs/development/web/mailcatcher/gemset.nix @@ -16,6 +16,7 @@ version = "1.0.9.1"; }; mail = { + dependencies = ["mime-types"]; source = { remotes = ["https://rubygems.org"]; sha256 = "0d7lhj2dw52ycls6xigkfz6zvfhc6qggply9iycjmcyj9760yvz9"; @@ -24,6 +25,7 @@ version = "2.6.6"; }; mailcatcher = { + dependencies = ["eventmachine" "mail" "rack" "sinatra" "skinny" "sqlite3" "thin"]; source = { remotes = ["https://rubygems.org"]; sha256 = "0h6gk8n18i5f651f244al1hscjzl27fpma4vqw0qhszqqpd5p3bx"; @@ -32,6 +34,7 @@ version = "0.6.5"; }; mime-types = { + dependencies = ["mime-types-data"]; source = { remotes = ["https://rubygems.org"]; sha256 = "0087z9kbnlqhci7fxh9f6il63hj1k02icq2rs0c6cppmqchr753m"; @@ -50,12 +53,13 @@ rack = { source = { remotes = ["https://rubygems.org"]; - sha256 = "19m7aixb2ri7p1n0iqaqx8ldi97xdhvbxijbyrrcdcl6fv5prqza"; + sha256 = "1g9926ln2lw12lfxm4ylq1h6nl0rafl10za3xvjzc87qvnqic87f"; type = "gem"; }; - version = "1.6.8"; + version = "1.6.11"; }; rack-protection = { + dependencies = ["rack"]; source = { remotes = ["https://rubygems.org"]; sha256 = "0cvb21zz7p9wy23wdav63z5qzfn4nialik22yqp6gihkgfqqrh5r"; @@ -64,6 +68,7 @@ version = "1.5.3"; }; sinatra = { + dependencies = ["rack" "rack-protection" "tilt"]; source = { remotes = ["https://rubygems.org"]; sha256 = "0byxzl7rx3ki0xd7aiv1x8mbah7hzd8f81l65nq8857kmgzj1jqq"; @@ -72,6 +77,7 @@ version = "1.4.8"; }; skinny = { + dependencies = ["eventmachine" "thin"]; source = { remotes = ["https://rubygems.org"]; sha256 = "1y3yvx88ylgz4d2s1wskjk5rkmrcr15q3ibzp1q88qwzr5y493a9"; @@ -88,6 +94,7 @@ version = "1.3.13"; }; thin = { + dependencies = ["daemons" "eventmachine" "rack"]; source = { remotes = ["https://rubygems.org"]; sha256 = "0hrq9m3hb6pm8yrqshhg0gafkphdpvwcqmr7k722kgdisp3w91ga"; diff --git a/pkgs/development/web/now-cli/default.nix b/pkgs/development/web/now-cli/default.nix index 911e03daa3714479f9dcc6b33f81aa10a9d052ab..0af669ff0699ae25aeee82a9bafe839fb724b251 100644 --- a/pkgs/development/web/now-cli/default.nix +++ b/pkgs/development/web/now-cli/default.nix @@ -1,12 +1,12 @@ { stdenv, lib, fetchurl }: stdenv.mkDerivation rec { name = "now-cli-${version}"; - version = "11.4.6"; + version = "11.5.2"; # TODO: switch to building from source, if possible src = fetchurl { url = "https://github.com/zeit/now-cli/releases/download/${version}/now-linux.gz"; - sha256 = "1bl0yrzxdfy6sks674qlfch8mg3b0x1wj488v83glags8ibsg3cl"; + sha256 = "1aavhslff2v5ap11s3xxrmdgs4n9yyp74sj3kbw6kwxd4cq1cfxz"; }; sourceRoot = "."; diff --git a/pkgs/games/blackshades/default.nix b/pkgs/games/blackshades/default.nix index 4b874c954b0a2dda9592b422bf698f76d29ccf62..bf58b523e76e282cbc5f1c257f8a451df432d5bd 100644 --- a/pkgs/games/blackshades/default.nix +++ b/pkgs/games/blackshades/default.nix @@ -4,7 +4,7 @@ stdenv.mkDerivation rec { name = "blackshades-svn-110"; src = fetchsvn { url = svn://svn.icculus.org/blackshades/trunk; - rev = 110; + rev = "110"; sha256 = "0kbrh1dympk8scjxr6av24qs2bffz44l8qmw2m5gyqf4g3rxf6ra"; }; diff --git a/pkgs/games/blackshadeselite/default.nix b/pkgs/games/blackshadeselite/default.nix index 2f503e02ec20da0db1a6d8ab440714b605795f06..25b9321bec39b1e74d24ad8ecc3d82ea1c8fae68 100644 --- a/pkgs/games/blackshadeselite/default.nix +++ b/pkgs/games/blackshadeselite/default.nix @@ -4,7 +4,7 @@ stdenv.mkDerivation rec { name = "blackshades-elite-svn-29"; src = fetchsvn { url = svn://svn.gna.org/svn/blackshadeselite/trunk; - rev = 29; + rev = "29"; sha256 = "1lkws5pqpgcgdlar11waikp6y41z678457n9jcik7nhn53cjjr1s"; }; diff --git a/pkgs/games/bzflag/default.nix b/pkgs/games/bzflag/default.nix index c8618c13347d53d97308362194578ff060ee4a77..c114443e1e720ce116ba521c7ae3b5dcfed42193 100644 --- a/pkgs/games/bzflag/default.nix +++ b/pkgs/games/bzflag/default.nix @@ -4,11 +4,11 @@ stdenv.mkDerivation rec { name = "${pname}-${version}"; pname = "bzflag"; - version = "2.4.16"; + version = "2.4.18"; src = fetchurl { url = "https://download.bzflag.org/${pname}/source/${version}/${name}.tar.bz2"; - sha256 = "00y2ifjgl4yz1pb2fgkg00vrfb6yk5cfxwjbx3fw2alnsaw6cqgg"; + sha256 = "1gmz31wmn3f8zq1bfilkgbf4qmi4fa0c93cs76mhg8h978pm23cx"; }; nativeBuildInputs = [ pkgconfig ]; diff --git a/pkgs/games/dwarf-fortress/wrapper/default.nix b/pkgs/games/dwarf-fortress/wrapper/default.nix index 058bb5f72ae6e648b59643c30f8bdb54aa164f45..8672de3af84f05c303e976dcc880f56fe465cd93 100644 --- a/pkgs/games/dwarf-fortress/wrapper/default.nix +++ b/pkgs/games/dwarf-fortress/wrapper/default.nix @@ -33,10 +33,13 @@ let ++ lib.optional enableTWBT twbt.art ++ [ dwarf-fortress ]; - fixup = lib.singleton (runCommand "fixup" {} '' + fixup = lib.singleton (runCommand "fixup" {} ('' mkdir -p $out/data/init + '' + (if (theme != null) then '' + cp ${lib.head themePkg}/data/init/init.txt $out/data/init/init.txt + '' else '' cp ${dwarf-fortress}/data/init/init.txt $out/data/init/init.txt - '' + lib.optionalString enableDFHack '' + '') + lib.optionalString enableDFHack '' mkdir -p $out/hack # Patch the MD5 @@ -60,7 +63,7 @@ let --replace '[INTRO:YES]' '[INTRO:${unBool enableIntro}]' \ --replace '[TRUETYPE:YES]' '[TRUETYPE:${unBool enableTruetype}]' \ --replace '[FPS:NO]' '[FPS:${unBool enableFPS}]' - ''); + '')); env = buildEnv { name = "dwarf-fortress-env-${dwarf-fortress.dfVersion}"; diff --git a/pkgs/games/flightgear/default.nix b/pkgs/games/flightgear/default.nix index b7a4af54929d228f9e9951f10be30cd46234bf2e..f3b77d87e179f8ab4bcd2fae871984a1d35d041a 100644 --- a/pkgs/games/flightgear/default.nix +++ b/pkgs/games/flightgear/default.nix @@ -6,14 +6,14 @@ }: let - version = "2017.3.1"; - shortVersion = "2017.3"; + version = "2018.2.2"; + shortVersion = "2018.2"; data = stdenv.mkDerivation rec { name = "flightgear-base-${version}"; src = fetchurl { url = "mirror://sourceforge/flightgear/release-${shortVersion}/FlightGear-${version}-data.tar.bz2"; - sha256 = "166q0fsbp17lx1l1n6i8cfk3d1i79pasz1liya09z6m2i1pb026z"; + sha256 = "c89b94e4cf3cb7eda728daf6cca6dd051f7a47863776c99fd2f3fe0054400ac4"; }; phases = [ "installPhase" ]; @@ -31,7 +31,7 @@ stdenv.mkDerivation rec { src = fetchurl { url = "mirror://sourceforge/flightgear/release-${shortVersion}/${name}.tar.bz2"; - sha256 = "1kccf91vmxnzyki6grx09s10dvr4j6qrz34ikj7jn81g5scisbkg"; + sha256 = "61f809ef0a3f6908d156f0c483ed5313d31b5a6ac74761955d0b266751718147"; }; # Of all the files in the source and data archives, there doesn't seem to be diff --git a/pkgs/games/gargoyle/darwin.patch b/pkgs/games/gargoyle/darwin.patch index 230f453acad7a850612eaf93429a53ed6670fc24..6958fe495d26d23f5f557758df4e92e9c33929f1 100644 --- a/pkgs/games/gargoyle/darwin.patch +++ b/pkgs/games/gargoyle/darwin.patch @@ -1,33 +1,3 @@ -diff --git a/Jamshared b/Jamshared -index 13db835..fd42928 100644 ---- a/Jamshared -+++ b/Jamshared -@@ -79,7 +79,7 @@ if $(OS) = MACOSX - { - actions together SharedLink bind NEEDLIBS - { -- $(LINK) -headerpad_max_install_names $(FRAMEWORKS) $(MAINARCH) $(ALTARCH) -dynamiclib $(SHRLINKFLAGS) -install_name @executable_path/$(<:D=) -o $(<) $(>) $(NEEDLIBS) $(SHRLINKLIBS) -+ $(LINK) $(FRAMEWORKS) $(MAINARCH) $(ALTARCH) -dynamiclib $(SHRLINKFLAGS) -install_name @executable_path/$(<:D=) -o $(<) $(>) $(NEEDLIBS) $(SHRLINKLIBS) - } - } - else -diff --git a/tads/Jamfile b/tads/Jamfile -index 1f8829d..d8455eb 100644 ---- a/tads/Jamfile -+++ b/tads/Jamfile -@@ -33,8 +33,8 @@ if $(OS) = LINUX || $(OS) = SOLARIS - - if $(OS) = MACOSX - { -- SubDirCcFlags -headerpad_max_install_names $(MAINARCH) $(ALTARCH) ; -- LINKFLAGS = -headerpad_max_install_names $(MAINARCH) $(ALTARCH) ; -+ SubDirCcFlags $(MAINARCH) $(ALTARCH) ; -+ LINKFLAGS = $(MAINARCH) $(ALTARCH) ; - } - - SEARCH_SOURCE = -diff --git a/garglk/fontmac.m b/garglk/fontmac.m -index d6e1426..72304a3 100644 --- a/garglk/fontmac.m +++ b/garglk/fontmac.m @@ -167,7 +167,7 @@ static void propfont(char *file, int style) @@ -48,15 +18,6 @@ index d6e1426..72304a3 100644 [fontFamilyDescriptor matchingFontDescriptorsWithMandatoryKeys: nil]; for (NSFontDescriptor * sysfont in fontMatches) -@@ -197,7 +197,7 @@ void fontreplace(char *font, int type) - - else if ([sysfont symbolicTraits] & NSFontItalicTrait) - style = FONTI; -- -+ - /* find path for font */ - CFURLRef urlRef = CTFontDescriptorCopyAttribute((CTFontDescriptorRef)sysfont, kCTFontURLAttribute); - if (!urlRef) @@ -259,7 +259,7 @@ void fontload(void) // obtain a list of all files in the Fonts directory @@ -66,47 +27,9 @@ index d6e1426..72304a3 100644 // create a collection to hold the registered font URLs gli_registered_fonts = [NSMutableArray new]; -diff --git a/garglk/launchmac.m b/garglk/launchmac.m -index 68deca5..9f752ac 100644 --- a/garglk/launchmac.m +++ b/garglk/launchmac.m -@@ -72,14 +72,14 @@ char *winfilters[] = - height: (unsigned int) height - { - [[self openGLContext] makeCurrentContext]; -- -+ - /* allocate new texture */ - glDeleteTextures(1, &output); - glGenTextures(1, &output); - - /* bind target to texture */ -- glEnable(GL_TEXTURE_RECTANGLE_ARB); -- glBindTexture(GL_TEXTURE_RECTANGLE_ARB, output); -+ glEnable(GL_TEXTURE_RECTANGLE_ARB); -+ glBindTexture(GL_TEXTURE_RECTANGLE_ARB, output); - - /* set target parameters */ - glTexParameteri(GL_TEXTURE_RECTANGLE_ARB, GL_TEXTURE_STORAGE_HINT_APPLE, GL_STORAGE_CACHED_APPLE); -@@ -460,7 +460,7 @@ static BOOL isTextbufferEvent(NSEvent * evt) - if (filter != FILTER_ALL) - { - NSArray * filterTypes = [NSArray arrayWithObject: [NSString stringWithCString: winfilters[filter] -- encoding: NSUTF8StringEncoding]]; -+ encoding: NSUTF8StringEncoding]]; - [openDlg setAllowedFileTypes: filterTypes]; - [openDlg setAllowsOtherFileTypes: NO]; - } -@@ -485,7 +485,7 @@ static BOOL isTextbufferEvent(NSEvent * evt) - if (filter != FILTER_ALL) - { - NSArray * filterTypes = [NSArray arrayWithObject: [NSString stringWithCString: winfilters[filter] -- encoding: NSUTF8StringEncoding]]; -+ encoding: NSUTF8StringEncoding]]; - [saveDlg setAllowedFileTypes: filterTypes]; - [saveDlg setAllowsOtherFileTypes: NO]; - } -@@ -518,7 +518,7 @@ static BOOL isTextbufferEvent(NSEvent * evt) +@@ -556,7 +556,7 @@ static BOOL isTextbufferEvent(NSEvent * evt) { BOOL openedFirstGame; @@ -115,34 +38,6 @@ index 68deca5..9f752ac 100644 NSConnection * link; } - (BOOL) launchFile: (NSString *) file; -@@ -760,20 +760,20 @@ static BOOL isTextbufferEvent(NSEvent * evt) - - (BOOL) launchFileDialog - { - int result; -- -+ - NSOpenPanel * openDlg = [NSOpenPanel openPanel]; - - [openDlg setCanChooseFiles: YES]; - [openDlg setCanChooseDirectories: NO]; - [openDlg setAllowsMultipleSelection: NO]; - [openDlg setTitle: [NSString stringWithCString: AppName encoding: NSUTF8StringEncoding]]; -- -+ - NSMutableArray *filterTypes = [NSMutableArray arrayWithCapacity:100]; -- -- NSEnumerator *docTypeEnum = [[[[NSBundle mainBundle] infoDictionary] -+ -+ NSEnumerator *docTypeEnum = [[[[NSBundle mainBundle] infoDictionary] - objectForKey:@"CFBundleDocumentTypes"] objectEnumerator]; - NSDictionary *docType; -- -+ - while (docType = [docTypeEnum nextObject]) - { - [filterTypes addObjectsFromArray:[docType objectForKey: @"CFBundleTypeExtensions"]]; -diff --git a/garglk/ttsmac.m b/garglk/ttsmac.m -index 9f6ab0e..de3d6fe 100644 --- a/garglk/ttsmac.m +++ b/garglk/ttsmac.m @@ -30,7 +30,7 @@ @@ -167,29 +62,3 @@ index 9f6ab0e..de3d6fe 100644 if ([lang isEqualToString: [attr objectForKey: NSVoiceLocaleIdentifier]]) { [synth setVoice: voice]; -diff --git a/tads/tads3/vmtz.cpp b/tads/tads3/vmtz.cpp -index 5e193a1..dce46f7 100644 ---- a/tads/tads3/vmtz.cpp -+++ b/tads/tads3/vmtz.cpp -@@ -1985,5 +1985,5 @@ void CVmTimeZone::query(vmtzquery *result, int32_t dayno, int32_t daytime, - * up until that moment - */ -- result->set(tcur > 0 ? tcur - 1 : tcur); -+ result->set(tcur != 0 ? tcur - 1 : tcur); - return; - } -diff --git a/terps/Jamfile b/terps/Jamfile -index b5f6d52..2d1ccdb 100644 ---- a/terps/Jamfile -+++ b/terps/Jamfile -@@ -185,8 +185,8 @@ if $(MAKE_GEAS) = yes - - if $(OS) = MACOSX - { -- SubDirCcFlags -headerpad_max_install_names $(MAINARCH) $(ALTARCH) ; -- LINKFLAGS = -headerpad_max_install_names $(MAINARCH) $(ALTARCH) ; -+ SubDirCcFlags $(MAINARCH) $(ALTARCH) ; -+ LINKFLAGS = $(MAINARCH) $(ALTARCH) ; - } - - SUBDIRC++FLAGS = $(SUBDIRCCFLAGS) ; diff --git a/pkgs/games/gargoyle/default.nix b/pkgs/games/gargoyle/default.nix index fc02bdffcad8b4a629aefa0efcb04ba122904171..5bf0ae1c814a045ee502868f5f9c67f467162d3e 100644 --- a/pkgs/games/gargoyle/default.nix +++ b/pkgs/games/gargoyle/default.nix @@ -1,4 +1,5 @@ -{ stdenv, fetchFromGitHub, jam, libtool, pkgconfig, gtk2, SDL, SDL_mixer, SDL_sound, smpeg, libvorbis }: +{ stdenv, lib, fetchFromGitHub, jam, cctools, pkgconfig +, SDL, SDL_mixer, SDL_sound, cf-private, gtk2, libvorbis, smpeg }: let @@ -19,28 +20,22 @@ let in stdenv.mkDerivation { - name = "gargoyle-2017-08-27"; + name = "gargoyle-2018-10-06"; src = fetchFromGitHub { owner = "garglk"; repo = "garglk"; - rev = "65c95166f53adaa2e5e1a5e0d8a34e9219d06de6"; - sha256 = "1agnap38qdf2n1v37ka3ky44j56yhvln4lzf13diyqhjmh9lvfq5"; + rev = "d03391563fa75942fbf8f8deeeacf3a8be9fc3b0"; + sha256 = "0icwgc25gp7krq6zf66hljydc6vps6bb4knywnrfgnfcmcalqqx9"; }; - nativeBuildInputs = [ jam pkgconfig ] ++ stdenv.lib.optional stdenv.isDarwin libtool; + nativeBuildInputs = [ jam pkgconfig ] ++ lib.optional stdenv.isDarwin cctools; - buildInputs = [ gtk2 SDL SDL_mixer ] ++ ( - if stdenv.isDarwin then [ smpeg libvorbis ] else [ SDL_sound ] - ); + buildInputs = [ SDL SDL_mixer SDL_sound gtk2 ] + ++ lib.optionals stdenv.isDarwin [ cf-private smpeg libvorbis ]; patches = [ ./darwin.patch ]; - postPatch = '' - substituteInPlace Jamrules \ - --replace -mmacosx-version-min=10.7 -mmacosx-version-min=$MACOSX_DEPLOYMENT_TARGET - ''; - buildPhase = jamenv + "jam -j$NIX_BUILD_CORES"; installPhase = if stdenv.isDarwin then (builtins.readFile ./darwin.sh) else jamenv + '' @@ -57,7 +52,7 @@ stdenv.mkDerivation { enableParallelBuilding = true; - meta = with stdenv.lib; { + meta = with lib; { homepage = http://ccxvii.net/gargoyle/; license = licenses.gpl2Plus; description = "Interactive fiction interpreter GUI"; diff --git a/pkgs/games/gemrb/default.nix b/pkgs/games/gemrb/default.nix index 0e9025259224bbb95f150950deaf12cac7551787..fc7bf7168ddfafa1fd2003a473e84d47abbfaf5a 100644 --- a/pkgs/games/gemrb/default.nix +++ b/pkgs/games/gemrb/default.nix @@ -1,5 +1,6 @@ { stdenv, fetchFromGitHub, cmake -, freetype, SDL2, SDL2_mixer, openal, zlib, libpng, python, libvorbis }: +, freetype, SDL2, SDL2_mixer, openal, zlib, libpng, python, libvorbis +, libiconv }: stdenv.mkDerivation rec { name = "gemrb-${version}"; @@ -13,7 +14,7 @@ stdenv.mkDerivation rec { }; # TODO: make libpng, libvorbis, sdl_mixer, freetype, vlc, glew (and other gl reqs) optional - buildInputs = [ freetype python openal SDL2 SDL2_mixer zlib libpng libvorbis ]; + buildInputs = [ freetype python openal SDL2 SDL2_mixer zlib libpng libvorbis libiconv ]; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/games/minecraft-server/default.nix b/pkgs/games/minecraft-server/default.nix index 59e1144cf9670adf001c10e1aaa657240edc77bb..050e0126fa7285945e0946e92284634d1db87aeb 100644 --- a/pkgs/games/minecraft-server/default.nix +++ b/pkgs/games/minecraft-server/default.nix @@ -2,11 +2,13 @@ stdenv.mkDerivation rec { name = "minecraft-server-${version}"; - version = "1.12.2"; + version = "1.13.2"; src = fetchurl { - url = "https://s3.amazonaws.com/Minecraft.Download/versions/${version}/minecraft_server.${version}.jar"; - sha256 = "0zhnac6yvkdgdaag0gb0fgrkgizbwrpf7s76yqdiknfswrs947zy"; + # Old url + # https://s3.amazonaws.com/Minecraft.Download/versions/${version}/minecraft_server.${version}.jar + url = "https://launcher.mojang.com/v1/objects/3737db93722a9e39eeada7c27e7aca28b144ffa7/server.jar"; + sha256 = "13h8dxrrgqa1g6sd7aaw26779hcsqsyjm7xm0sknifn54lnamlzz"; }; preferLocalBuild = true; diff --git a/pkgs/games/minetest/default.nix b/pkgs/games/minetest/default.nix index fee8919bb2363536aacaa29337070fc54f4a12c8..28616fe845fc86fe5deb942dda9674d15ea3a45e 100644 --- a/pkgs/games/minetest/default.nix +++ b/pkgs/games/minetest/default.nix @@ -4,19 +4,19 @@ }: let - version = "0.4.16"; + version = "0.4.17"; sources = { src = fetchFromGitHub { owner = "minetest"; repo = "minetest"; rev = "${version}"; - sha256 = "048m8as01bw4pnwfxx04wfnyljxq7ivk88l214zi18prrrkfamj3"; + sha256 = "0ri9hyhvcnyyy2k83qvv543s10476g9fn3vcbjwvxjfqap9mkc5m"; }; data = fetchFromGitHub { owner = "minetest"; repo = "minetest_game"; rev = "${version}"; - sha256 = "0alikzyjvj9hd8s3dd6ghpz0y982w2j0yd2zgd7a047mxw21hrcn"; + sha256 = "1g8iw2pya32ifljbdx6z6rpcinmzm81i9minhi2bi1d500ailn7s"; }; }; in stdenv.mkDerivation { diff --git a/pkgs/games/privateer/default.nix b/pkgs/games/privateer/default.nix index f6f3e6001825c7d2b2e1e03f132a1d7131ea6ff8..301249789dad04c48aea8e9e23e49ea41dc9e143 100644 --- a/pkgs/games/privateer/default.nix +++ b/pkgs/games/privateer/default.nix @@ -8,7 +8,7 @@ stdenv.mkDerivation { src = fetchsvn { #url = "mirror://sourceforge/project/privateer/Wing%20Commander%20Privateer/Privateer%20Gemini%20Gold%201.03/PrivateerGold1.03.bz2.bin"; url = "https://privateer.svn.sourceforge.net/svnroot/privateer/privgold/trunk/engine"; - rev = 294; + rev = "294"; sha256 = "e1759087d4565d3fc95e5c87d0f6ddf36b2cd5befec5695ec56ed5f3cd144c63"; }; diff --git a/pkgs/games/speed-dreams/default.nix b/pkgs/games/speed-dreams/default.nix index 4bf03fec9de92a5070061a7fc374eee73b0f90a5..5f6e20c39b6b9813bfcc217d6a01753671cbcca8 100644 --- a/pkgs/games/speed-dreams/default.nix +++ b/pkgs/games/speed-dreams/default.nix @@ -35,6 +35,12 @@ stdenv.mkDerivation rec { tar -xf ${wip-cars-and-tracks} ''; + prePatch = '' + # https://sourceforge.net/p/speed-dreams/mailman/message/35665539/ + sed -i "s|lastSlash = '\\\0'|lastSlash = NULL|" src/libs/tgf/params.cpp + sed -i "s|const char\* error = '\\\0'|const char\* error = NULL|" src/libs/tgfclient/openalmusicplayer.cpp + ''; + preBuild = '' make -C src/libs/portability make -C src/libs/portability portability.o diff --git a/pkgs/games/steam/chrootenv.nix b/pkgs/games/steam/chrootenv.nix index 2762155d63ce7950f1582f86d576180563f5695f..c31b8b22216831e6b377da375b951ffcb238841c 100644 --- a/pkgs/games/steam/chrootenv.nix +++ b/pkgs/games/steam/chrootenv.nix @@ -180,6 +180,15 @@ in buildFHSUserEnv rec { ''; profile = '' + # Workaround for issue #44254 (Steam cannot connect to friends network) + # https://github.com/NixOS/nixpkgs/issues/44254 + if [ -z ''${TZ+x} ]; then + new_TZ="$(readlink -f /etc/localtime | grep -P -o '(?<=/zoneinfo/).*$')" + if [ $? -eq 0 ]; then + export TZ="$new_TZ" + fi + fi + export STEAM_RUNTIME=${if nativeOnly then "0" else "/steamrt"} '' + extraProfile; diff --git a/pkgs/games/vdrift/default.nix b/pkgs/games/vdrift/default.nix index 7e43fbf2c880cff6cdc11a3b0f7d69fd7053f9eb..6c571da561c5a584c027f5907cfe5d7bcdd53bd7 100644 --- a/pkgs/games/vdrift/default.nix +++ b/pkgs/games/vdrift/default.nix @@ -3,7 +3,7 @@ , data ? fetchsvn { url = "svn://svn.code.sf.net/p/vdrift/code/vdrift-data"; - rev = 1386; + rev = "1386"; sha256 = "0ka6zir9hg0md5p03dl461jkvbk05ywyw233hnc3ka6shz3vazi1"; } }: diff --git a/pkgs/games/zangband/default.nix b/pkgs/games/zangband/default.nix index cf5e41f389a908e4c780f76e158e0f8c1a21934b..6fab49825340adbe67f8fa80687becd91eaf2e24 100644 --- a/pkgs/games/zangband/default.nix +++ b/pkgs/games/zangband/default.nix @@ -1,28 +1,23 @@ { stdenv, fetchurl, ncurses, flex, bison, autoconf, automake, m4, coreutils }: stdenv.mkDerivation rec { - name = "zangband-${version}"; - version = "2.7.3"; + name = pname + "-" + version; + pname = "zangband"; + version = "2.7.4b"; src = fetchurl { - url = "ftp://ftp.sunet.se/pub/games/Angband/Variant/ZAngband/zangband-${version}.tar.gz"; - sha256 = "0654m8fzklsc8565sqdad76mxjsm1z9c280srq8863sd10af0bdq"; + url = "mirror://sourceforge/project/${pname}/${pname}-src/${version}/${name}.tar.gz"; + sha256 = "0kkz6f9myhjnr3308sdab8q186rd55lapvcp38w8qmakdbhc828j"; }; buildInputs = [ ncurses flex bison autoconf automake m4 ]; - # fails during chmod due to broken permissions - dontMakeSourcesWritable = true; - postUnpack = '' - chmod a+rwX -R . - ''; - preConfigure = '' sed -re 's/ch(own|grp|mod)/true/' -i lib/*/makefile.zb makefile.in sed -e '/FIXED_PATHS/d' -i src/z-config.h - ./bootstrap + autoconf ''; preInstall = '' @@ -42,8 +37,8 @@ stdenv.mkDerivation rec { cd "$ZANGBAND_PATH" for i in $(find "$ORIG_PATH" -type f); do REL_PATH="''${i#$ORIG_PATH/}" - mkdir -p "$(dirname "$REL_PATH")" - ln -s "$i" "$REL_PATH" &>/dev/null + mkdir -p "$(dirname "$REL_PATH")" + ln -s "$i" "$REL_PATH" &>/dev/null done mkdir -p lib/user lib/save for i in lib/*/*.raw; do @@ -59,5 +54,6 @@ stdenv.mkDerivation rec { meta = { description = "Rogue-like game"; license = stdenv.lib.licenses.unfree; + broken = true; # broken in runtime, will not get pass character generation }; } diff --git a/pkgs/misc/brightnessctl/default.nix b/pkgs/misc/brightnessctl/default.nix index f90baee91fcfcf16f8a8c2c50c0e48992c7de72b..6292b8183b28efec2bf1ec3b4e829eb1814c35b8 100644 --- a/pkgs/misc/brightnessctl/default.nix +++ b/pkgs/misc/brightnessctl/default.nix @@ -11,20 +11,18 @@ stdenv.mkDerivation rec { sha256 = "1n1gb8ldgqv3vs565yhk1w4jfvrviczp94r8wqlkv5q6ab43c8w9"; }; - makeFlags = [ "MODE=0755" "PREFIX=" "DESTDIR=$(out)" ]; - installTargets = [ "install" "install_udev_rules" ]; + makeFlags = [ "PREFIX=" "DESTDIR=$(out)" ]; postPatch = '' substituteInPlace 90-brightnessctl.rules --replace /bin/ ${coreutils}/bin/ - substituteInPlace 90-brightnessctl.rules --replace %k '*' ''; - meta = { + meta = with stdenv.lib; { homepage = "https://github.com/Hummer12007/brightnessctl"; - maintainers = [ stdenv.lib.maintainers.Dje4321 ]; - license = stdenv.lib.licenses.mit; description = "This program allows you read and control device brightness"; - platforms = stdenv.lib.platforms.linux; + license = licenses.mit; + maintainers = with maintainers; [ megheaiulian ]; + platforms = platforms.linux; }; } diff --git a/pkgs/misc/cups/drivers/brlaser/default.nix b/pkgs/misc/cups/drivers/brlaser/default.nix index 46c38892bf8f1f00fc871aa9cf664a9487c2075c..08cc222e4a5b7f7a51029363960ebf46347cb3b7 100644 --- a/pkgs/misc/cups/drivers/brlaser/default.nix +++ b/pkgs/misc/cups/drivers/brlaser/default.nix @@ -14,7 +14,7 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ cmake ]; buildInputs = [ zlib cups ]; - cmakeFlags = [ "-DCUPS_SERVER_BIN=$out/lib/cups" "-DCUPS_DATA_DIR=$out/share/cups" ]; + cmakeFlags = [ "-DCUPS_SERVER_BIN=lib/cups" "-DCUPS_DATA_DIR=share/cups" ]; meta = with stdenv.lib; { description = "A CUPS driver for Brother laser printers"; diff --git a/pkgs/misc/cups/drivers/splix/default.nix b/pkgs/misc/cups/drivers/splix/default.nix index 012b37959d8fca174e779178074a5df320616aec..e227de086de6dcf91b9e7fbfc9c0234056a93fdc 100644 --- a/pkgs/misc/cups/drivers/splix/default.nix +++ b/pkgs/misc/cups/drivers/splix/default.nix @@ -1,7 +1,6 @@ { stdenv, fetchsvn, fetchurl, cups, cups-filters, jbigkit, zlib }: let - rev = "315"; color-profiles = stdenv.mkDerivation { name = "splix-color-profiles-20070625"; @@ -19,14 +18,15 @@ let ''; }; -in stdenv.mkDerivation { +in stdenv.mkDerivation rec { name = "splix-svn-${rev}"; + rev = "315"; src = fetchsvn { # We build this from svn, because splix hasn't been in released in several years # although the community has been adding some new printer models. url = "svn://svn.code.sf.net/p/splix/code/splix"; - rev = "r${rev}"; + inherit rev; sha256 = "16wbm4xnz35ca3mw2iggf5f4jaxpyna718ia190ka6y4ah932jxl"; }; diff --git a/pkgs/misc/drivers/sc-controller/default.nix b/pkgs/misc/drivers/sc-controller/default.nix index 9de0ba2777897205570b3effd6231eba6d42ff2a..b504002b7d9af493c4604d3b6662da59c6ec45c7 100644 --- a/pkgs/misc/drivers/sc-controller/default.nix +++ b/pkgs/misc/drivers/sc-controller/default.nix @@ -7,13 +7,13 @@ buildPythonApplication rec { pname = "sc-controller"; - version = "0.4.4"; + version = "0.4.5"; src = fetchFromGitHub { owner = "kozec"; repo = pname; rev = "v${version}"; - sha256 = "0ki9x28i5slpnygkpdglcvj8cssvvjyz732y1cnpzw1f0sj0kris"; + sha256 = "0mb9r4811rfj5rs4vrdhaf3x38iy1fvxr4sk2zg3xhvc29cdf5wv"; }; nativeBuildInputs = [ wrapGAppsHook ]; @@ -24,10 +24,6 @@ buildPythonApplication rec { checkInputs = [ pytest ]; - patches = [ - ./fix-udev.patch # fix upstream issue #401, remove with the next update - ]; - postPatch = '' substituteInPlace scc/paths.py --replace sys.prefix "'$out'" substituteInPlace scc/uinput.py --replace /usr/include ${linuxHeaders}/include diff --git a/pkgs/misc/emulators/dosbox/default.nix b/pkgs/misc/emulators/dosbox/default.nix index 57e76a9643769b3f9b89fe65bcd412ab8e4e9b84..878e98fa1665c0c2f23695eb1c66a9c408455a29 100644 --- a/pkgs/misc/emulators/dosbox/default.nix +++ b/pkgs/misc/emulators/dosbox/default.nix @@ -1,31 +1,16 @@ -{ stdenv, lib, fetchurl, SDL, makeDesktopItem, libGLU_combined }: +{ stdenv, lib, fetchurl, makeDesktopItem, SDL, SDL_net, SDL_sound, libGLU_combined, libpng }: stdenv.mkDerivation rec { - name = "dosbox-0.74"; + name = "dosbox-0.74-2"; src = fetchurl { url = "mirror://sourceforge/dosbox/${name}.tar.gz"; - sha256 = "01cfjc5bs08m4w79nbxyv7rnvzq2yckmgrbq36njn06lw8b4kxqk"; + sha256 = "1ksp1b5szi0vy4x55rm3j1y9wq5mlslpy8llpg87rpdyjlsk0xvh"; }; - patches = - [ # Fix building with GCC 4.6. - (fetchurl { - url = "http://sources.gentoo.org/cgi-bin/viewvc.cgi/gentoo-x86/games-emulation/dosbox/files/dosbox-0.74-gcc46.patch?revision=1.1"; - sha256 = "03iv1ph7fccfw327ngnhvzwyiix7fsbdb5mmpxivzkidhlrssxq9"; - }) - (fetchurl { - url = "https://svnweb.freebsd.org/ports/head/emulators/dosbox/files/patch-src_gui_sdlmain.cpp?revision=435580&view=co&pathrev=435580"; - sha256 = "1mbj5wrn53k0zds2adys34949vzsbfgm0pmsyx14v9j0cxi7drca"; - name = "patch-src_gui_sdlmain.cpp"; - }) - ]; - - patchFlags = "-p0"; - hardeningDisable = [ "format" ]; - buildInputs = [ SDL libGLU_combined ]; + buildInputs = [ SDL SDL_net SDL_sound libGLU_combined libpng ]; configureFlags = lib.optional stdenv.isDarwin "--disable-sdltest"; @@ -43,6 +28,8 @@ stdenv.mkDerivation rec { cp ${desktopItem}/share/applications/* $out/share/applications ''; + enableParallelBuilding = true; + meta = with lib; { homepage = http://www.dosbox.com/; description = "A DOS emulator"; diff --git a/pkgs/misc/emulators/retroarch/default.nix b/pkgs/misc/emulators/retroarch/default.nix index a37d299fbf700500eb1ca799e7f88f981eb3b51b..24b46c8f9caae8aaa3dbf67082de6cc9c4c4b2bd 100644 --- a/pkgs/misc/emulators/retroarch/default.nix +++ b/pkgs/misc/emulators/retroarch/default.nix @@ -1,5 +1,5 @@ { stdenv, fetchFromGitHub, which, pkgconfig, makeWrapper -, ffmpeg, libGLU_combined, freetype, libxml2, python34 +, ffmpeg, libGLU_combined, freetype, libxml2, python3 , libobjc, AppKit, Foundation , alsaLib ? null , libpulseaudio ? null @@ -39,7 +39,7 @@ in stdenv.mkDerivation rec { nativeBuildInputs = [ pkgconfig ] ++ optional withVulkan [ makeWrapper ]; - buildInputs = [ ffmpeg freetype libxml2 libGLU_combined python34 SDL2 which ] + buildInputs = [ ffmpeg freetype libxml2 libGLU_combined python3 SDL2 which ] ++ optional enableNvidiaCgToolkit nvidia_cg_toolkit ++ optional withVulkan [ vulkan-loader ] ++ optionals stdenv.isDarwin [ libobjc AppKit Foundation ] diff --git a/pkgs/misc/gnuk/generic.nix b/pkgs/misc/gnuk/generic.nix index 22aaa2d1cb57243ed76ab729fe76c0f98b4904dc..80a4518f3f70fbfa69b5c522a352b0f1b693b720 100644 --- a/pkgs/misc/gnuk/generic.nix +++ b/pkgs/misc/gnuk/generic.nix @@ -1,4 +1,4 @@ -{ stdenv, gcc-arm-embedded, makeWrapper +{ stdenv, gcc-arm-embedded, binutils-arm-embedded, makeWrapper , python, pythonPackages # Extra options @@ -14,7 +14,7 @@ stdenv.mkDerivation { inherit src; - nativeBuildInputs = [ gcc-arm-embedded makeWrapper ]; + nativeBuildInputs = [ gcc-arm-embedded binutils-arm-embedded makeWrapper ]; buildInputs = [ python ] ++ (with pythonPackages; [ pyusb colorama ]); configurePhase = '' diff --git a/pkgs/misc/gnuk/git.nix b/pkgs/misc/gnuk/git.nix deleted file mode 100644 index 142c4a0e7e5fe01dad7508c041d53bbb90d952aa..0000000000000000000000000000000000000000 --- a/pkgs/misc/gnuk/git.nix +++ /dev/null @@ -1,11 +0,0 @@ -{ callPackage, fetchgit, ... } @ args: - -callPackage ./generic.nix (args // rec { - version = "2015-04-22"; - - src = fetchgit { - url = "git://git.gniibe.org/gnuk/gnuk.git"; - rev = "3d5a776ab15a4ae6e17d91341a58eda3db09f700"; - sha256 = "1f9l1rwy630z8cnjd6lfv0zp6ij3c9ifbm3fym245049hh2xds7v"; - }; -}) diff --git a/pkgs/misc/gnuk/unstable.nix b/pkgs/misc/gnuk/unstable.nix deleted file mode 100644 index 16dbe5d21fc83e7fd1f325632594c71e037b4ac1..0000000000000000000000000000000000000000 --- a/pkgs/misc/gnuk/unstable.nix +++ /dev/null @@ -1,11 +0,0 @@ -{ callPackage, fetchgit, ... } @ args: - -callPackage ./generic.nix (args // rec { - version = "1.1.4"; - - src = fetchgit { - url = "git://git.gniibe.org/gnuk/gnuk.git"; - rev = "e7e8b9f5ca414a5c901f61b0f043c8da42414103"; - sha256 = "0js9dc1iyvrrcb0d8a2irivrli3yb7mxmpxws5a2n53hj5xc4n6l"; - }; -}) diff --git a/pkgs/misc/lollypop-portal/default.nix b/pkgs/misc/lollypop-portal/default.nix deleted file mode 100644 index dfcdebace3b07ea5b465e667534f226c81c938c6..0000000000000000000000000000000000000000 --- a/pkgs/misc/lollypop-portal/default.nix +++ /dev/null @@ -1,61 +0,0 @@ -{ stdenv, fetchFromGitLab, meson, ninja, pkgconfig -, python3, gnome3, gst_all_1, gtk3, libnotify -, kid3, easytag, gobjectIntrospection, wrapGAppsHook }: - -python3.pkgs.buildPythonApplication rec { - name = "lollypop-portal-${version}"; - version = "0.9.7"; - - format = "other"; - doCheck = false; - - src = fetchFromGitLab { - domain = "gitlab.gnome.org"; - owner = "gnumdk"; - repo = name; - rev = version; - sha256 = "0rn5xmh6391i9l69y613pjad3pzdilskr2xjfcir4vpk8wprvph3"; - }; - - nativeBuildInputs = [ - gobjectIntrospection - meson - ninja - pkgconfig - wrapGAppsHook - ]; - - buildInputs = [ - gnome3.gnome-settings-daemon - gnome3.libsecret - gnome3.totem-pl-parser - gst_all_1.gst-plugins-base - gst_all_1.gstreamer - gtk3 - libnotify - python3 - ]; - - pythonPath = with python3.pkgs; [ - pycairo - pydbus - pygobject3 - ]; - - preFixup = '' - buildPythonPath "$out/libexec/lollypop-portal $pythonPath" - patchPythonScript "$out/libexec/lollypop-portal" - - gappsWrapperArgs+=( - --prefix PATH : "${stdenv.lib.makeBinPath [ easytag kid3 ]}" - ) - ''; - - meta = with stdenv.lib; { - description = "DBus Service for Lollypop"; - homepage = https://gitlab.gnome.org/gnumdk/lollypop-portal; - license = licenses.gpl3Plus; - maintainers = with maintainers; [ worldofpeace ]; - platforms = platforms.linux; - }; -} diff --git a/pkgs/misc/themes/adapta/default.nix b/pkgs/misc/themes/adapta/default.nix index 0c144b56741834a2d1b6f5b2add6b7e93e53a6df..cb281e68dfd732ba4562fc83781dad9bf9cc2f6f 100644 --- a/pkgs/misc/themes/adapta/default.nix +++ b/pkgs/misc/themes/adapta/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { name = "adapta-gtk-theme-${version}"; - version = "3.95.0.1"; + version = "3.95.0.11"; src = fetchFromGitHub { owner = "adapta-project"; repo = "adapta-gtk-theme"; rev = version; - sha256 = "0hc3ar55wjg51qf8c7h0nix0lyqs16mk1d4hhxyv102zq4l5fz97"; + sha256 = "19skrhp10xx07hbd0lr3d619vj2im35d8p9rmb4v4zacci804q04"; }; preferLocalBuild = true; diff --git a/pkgs/misc/themes/matcha/default.nix b/pkgs/misc/themes/matcha/default.nix index 9967de78639964cf9daa095a6ee2bda15a29207b..d76e0ed74c5d185931aec09ca3f9c189268d6872 100644 --- a/pkgs/misc/themes/matcha/default.nix +++ b/pkgs/misc/themes/matcha/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { name = "matcha-${version}"; - version = "2018-10-21"; + version = "2018-11-12"; src = fetchFromGitHub { owner = "vinceliuice"; repo = "matcha"; rev = version; - sha256 = "112xfnwlq9ih72qbfrin78ly7bc4i94my3i6s7yhc46qg1lncl73"; + sha256 = "04alnwb3r0546y7xk2lx8bsdm47q6j89vld3g19rfb3622iv85la"; }; buildInputs = [ gdk_pixbuf librsvg ]; diff --git a/pkgs/misc/themes/qtcurve/default.nix b/pkgs/misc/themes/qtcurve/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..54715c01a9eeb91ec9790a1e92565ca0fb1d6a2e --- /dev/null +++ b/pkgs/misc/themes/qtcurve/default.nix @@ -0,0 +1,51 @@ +{ stdenv, fetchurl, cmake, extra-cmake-modules, pkgconfig +, gtk2, qtbase, qtsvg, qtx11extras # Toolkit dependencies +, karchive, kconfig, kconfigwidgets, kio, frameworkintegration +, kguiaddons, ki18n, kwindowsystem, kdelibs4support, kiconthemes +, libpthreadstubs, pcre, libXdmcp, libX11, libXau # X11 dependencies +}: + +let + version = "1.9"; +in stdenv.mkDerivation { + name = "qtcurve-${version}"; + src = fetchurl { + url = "http://download.kde.org/stable/qtcurve/qtcurve-${version}.tar.xz"; + sha256 = "169gdny1cdld0qnx3nqvx568zjzdba4pwp3gxapc1hdh2cymw7r8"; + }; + + enableParallelBuilding = true; + + nativeBuildInputs = [ cmake extra-cmake-modules pkgconfig ]; + + buildInputs = [ + gtk2 + qtbase qtsvg qtx11extras + karchive kconfig kconfigwidgets kio kiconthemes kguiaddons ki18n + kwindowsystem kdelibs4support frameworkintegration + libpthreadstubs + pcre + libXdmcp libX11 libXau + ]; + + preConfigure = '' + for i in qt5/CMakeLists.txt qt5/config/CMakeLists.txt + do + substituteInPlace $i \ + --replace "{_Qt5_PLUGIN_INSTALL_DIR}" "{KDE_INSTALL_QTPLUGINDIR}" + done + substituteInPlace CMakeLists.txt \ + --replace \$\{GTK2_PREFIX\} $out + substituteInPlace gtk2/style/CMakeLists.txt \ + --replace \$\{GTK2_LIBDIR\} $out/lib + patchShebangs tools/gen-version.sh + ''; + + meta = with stdenv.lib; { + homepage = https://github.com/QtCurve/qtcurve; + description = "Widget styles for Qt5/Plasma 5 and gtk2"; + platforms = platforms.linux; + license = licenses.lgpl21Plus; + maintainers = [ maintainers.gnidorah ]; + }; +} diff --git a/pkgs/misc/vim-plugins/generated.nix b/pkgs/misc/vim-plugins/generated.nix index bd3458b98c8b7cee3458508145976e713077b5c6..0c30c92722c8dc56da0251b41bb2ee4cf8eecec4 100644 --- a/pkgs/misc/vim-plugins/generated.nix +++ b/pkgs/misc/vim-plugins/generated.nix @@ -53,12 +53,12 @@ }; ale = buildVimPluginFrom2Nix { - name = "ale-2018-10-29"; + name = "ale-2018-10-31"; src = fetchFromGitHub { owner = "w0rp"; repo = "ale"; - rev = "cae40e1c347064bd3ab5eb4c04e9e357d3d82105"; - sha256 = "0f7qsp0gpafk7fimcbivx2cm53hpjz6hr6lzdg8wnxcm0gdw7827"; + rev = "4b841b55869e3ec5b02806f9b2fe962ffdca2750"; + sha256 = "0wa8phv4b6n1akaii8qy9c0lr17vm4bqgz5chjx28zs73jfxsf2i"; }; }; @@ -92,13 +92,23 @@ }; }; + autoload_cscope-vim = buildVimPluginFrom2Nix { + name = "autoload_cscope-vim-2011-01-28"; + src = fetchFromGitHub { + owner = "vim-scripts"; + repo = "autoload_cscope.vim"; + rev = "26f428f400d96d25a9d633e6314f6e1760923db1"; + sha256 = "150h6k4nd1msa21c0zxl68nwwq3qdmqi0d8h4as98rrz0b0lghn7"; + }; + }; + awesome-vim-colorschemes = buildVimPluginFrom2Nix { - name = "awesome-vim-colorschemes-2018-01-20"; + name = "awesome-vim-colorschemes-2018-10-30"; src = fetchFromGitHub { owner = "rafi"; repo = "awesome-vim-colorschemes"; - rev = "8d2b6657bdbe4f7253e320c741bc4c1fc2f2f41d"; - sha256 = "1wfm6rsmyqldxwcz0ic4rq7kf00fgsx00rg42cl9yya35nqiri2z"; + rev = "21d1c93da95d58bead99f3226f9447f5b035afe1"; + sha256 = "1niwwyxgq7k7mbi05lnpz12lbmn9mam9x4qvzxcbvxsqqp2zzsj8"; }; }; @@ -436,6 +446,16 @@ }; }; + direnv-vim = buildVimPluginFrom2Nix { + name = "direnv-vim-2017-12-29"; + src = fetchFromGitHub { + owner = "direnv"; + repo = "direnv.vim"; + rev = "4d6271f0facd57a478c0d02895775dc01f577c5c"; + sha256 = "1vfg4hrxbqc96w694cn9gzjvwkscd111fp6dqlh7wpd2z3ciw07h"; + }; + }; + echodoc-vim = buildVimPluginFrom2Nix { name = "echodoc-vim-2018-10-20"; src = fetchFromGitHub { @@ -467,6 +487,17 @@ }; }; + emmet-vim = buildVimPluginFrom2Nix { + name = "emmet-vim-2018-10-06"; + src = fetchFromGitHub { + owner = "mattn"; + repo = "emmet-vim"; + rev = "7a4bf3463ef1e2c08393218fc67a8729c00948a5"; + sha256 = "15y5h7b6ll7nngaq9i44xb88rw2jg5ahbvybdn7kdf0nq1m3z409"; + fetchSubmodules = true; + }; + }; + ensime-vim = buildVimPluginFrom2Nix { name = "ensime-vim-2018-10-10"; src = fetchFromGitHub { @@ -718,6 +749,17 @@ }; }; + jedi-vim = buildVimPluginFrom2Nix { + name = "jedi-vim-2018-10-14"; + src = fetchFromGitHub { + owner = "davidhalter"; + repo = "jedi-vim"; + rev = "b6dfc5fd49c26d4dbe9f54c814956567a7a9b3a8"; + sha256 = "11wvynjl1m23vdp4wvirhmm7vnpji5affbyhwz67yjkvh6c42xqa"; + fetchSubmodules = true; + }; + }; + Jenkinsfile-vim-syntax = buildVimPluginFrom2Nix { name = "Jenkinsfile-vim-syntax-2018-09-25"; src = fetchFromGitHub { @@ -899,12 +941,12 @@ }; neco-vim = buildVimPluginFrom2Nix { - name = "neco-vim-2017-10-01"; + name = "neco-vim-2018-10-30"; src = fetchFromGitHub { owner = "Shougo"; repo = "neco-vim"; - rev = "f5397c5e800d65a58c56d8f1b1b92686b05f4ca9"; - sha256 = "0yb7ja6qgrazszk4i01cwjj00j9vd43zs2r11b08iy8n10jnzr73"; + rev = "4c0203b44f8daa7e2f72e2514488d637e8a766a4"; + sha256 = "03v3h2ks6y9pl960lnvzxlfhnn6l2pcn6d6012znw2wqpralrjq2"; }; }; @@ -949,12 +991,12 @@ }; neomake = buildVimPluginFrom2Nix { - name = "neomake-2018-10-28"; + name = "neomake-2018-10-29"; src = fetchFromGitHub { owner = "benekastah"; repo = "neomake"; - rev = "35f4c002d55d5f722a08eb9acf126f7717072812"; - sha256 = "0ad5dqyjpwn78nadg90jd03n0mkllm0r4jxq72h77dwxsd1prgl9"; + rev = "c15d51ea9f622b8bce469a18833a6ac64f6a1193"; + sha256 = "1l15y0di6k4v0vrwpd86lp2n5ljfjnzncgpxwmbhqb2xznr7caq7"; }; }; @@ -1009,12 +1051,12 @@ }; nerdtree = buildVimPluginFrom2Nix { - name = "nerdtree-2018-10-25"; + name = "nerdtree-2018-10-31"; src = fetchFromGitHub { owner = "scrooloose"; repo = "nerdtree"; - rev = "91e0f2253fbecefa7e14f095950341584877ef19"; - sha256 = "1lkmxplrv211drzmwi93v1fmicdjm146vl471s3h21y77k0hd2f5"; + rev = "8d005db94f8d1a214d172aeb1008d016c3d201e2"; + sha256 = "0f8dljl45ph668kwjf0py0891i3aqfdijplarxnblbkp2zn5ij7g"; }; }; @@ -1118,6 +1160,16 @@ }; }; + pig-vim = buildVimPluginFrom2Nix { + name = "pig-vim-2017-06-08"; + src = fetchFromGitHub { + owner = "motus"; + repo = "pig.vim"; + rev = "60d8a0883d3e474e61af46b581a5ce3af65e9bb5"; + sha256 = "0az48a3slpzljb69d60cpahkshmdbss0snc8lmvf4yrc1gx8yncv"; + }; + }; + pony-vim-syntax = buildVimPluginFrom2Nix { name = "pony-vim-syntax-2017-09-26"; src = fetchFromGitHub { @@ -1128,6 +1180,16 @@ }; }; + PreserveNoEOL = buildVimPluginFrom2Nix { + name = "PreserveNoEOL-2013-06-14"; + src = fetchFromGitHub { + owner = "vim-scripts"; + repo = "PreserveNoEOL"; + rev = "940e3ce90e54d8680bec1135a21dcfbd6c9bfb62"; + sha256 = "1726jpr2zf6jrb00pp082ikbx4mll3a877pnzs6i18f9fgpaqqgd"; + }; + }; + psc-ide-vim = buildVimPluginFrom2Nix { name = "psc-ide-vim-2018-03-11"; src = fetchFromGitHub { @@ -1468,6 +1530,16 @@ }; }; + traces-vim = buildVimPluginFrom2Nix { + name = "traces-vim-2018-10-14"; + src = fetchFromGitHub { + owner = "markonm"; + repo = "traces.vim"; + rev = "9520ed3837340028b871a9e497dd0d0b07cb4953"; + sha256 = "0dfm04c4v0qk2f7fycpkwhbws0m5q383bizyaslflb1mmx3jnc48"; + }; + }; + tslime-vim = buildVimPluginFrom2Nix { name = "tslime-vim-2018-07-23"; src = fetchFromGitHub { @@ -1479,12 +1551,12 @@ }; tsuquyomi = buildVimPluginFrom2Nix { - name = "tsuquyomi-2018-08-03"; + name = "tsuquyomi-2018-10-31"; src = fetchFromGitHub { owner = "Quramy"; repo = "tsuquyomi"; - rev = "05e6515f6d21545959ac4eb570c917e1d225b1f1"; - sha256 = "0hbd2d8zb86c8ncrrm4zyj92j523xay2lwk2k9arwacn8fj42hir"; + rev = "bdd034d06ed47176ec1ee0bd3dae5bc0aeb053e3"; + sha256 = "119dxmkarbh0b0k4l59mxr19shks4mv96j3mbz02q0kdq18bgrdq"; }; }; @@ -1539,12 +1611,12 @@ }; vim = buildVimPluginFrom2Nix { - name = "vim-2018-10-27"; + name = "vim-2018-10-30"; src = fetchFromGitHub { owner = "dracula"; repo = "vim"; - rev = "854886980635eb70e119d2bd3bb94a0ce46fc71d"; - sha256 = "1ff88clly227cj83ng6bwc8jn3zp20614agg94izqhsxr5bpdp5z"; + rev = "66755a9cb9bdea62720812a1165132de6ff62468"; + sha256 = "0zca3spgnf00rxa0h5x79ydycz41b0xli7bgwpnbxannzxqswhiy"; }; }; @@ -1749,12 +1821,12 @@ }; vim-airline = buildVimPluginFrom2Nix { - name = "vim-airline-2018-10-22"; + name = "vim-airline-2018-11-01"; src = fetchFromGitHub { owner = "vim-airline"; repo = "vim-airline"; - rev = "08e9aa5386eecfd6a6cbde1eff240619cd81beed"; - sha256 = "0g9rlr6067sqyp0l4yacnr14phx1wn2jvjcq2x2zwkc0b28hxyrs"; + rev = "6516b1b4dccef543d489177431050fe8a5c5c99c"; + sha256 = "0x4vdxz31vqyd3qy8vr4gcdc649nz72axris5fxj8ln5zphlr6ll"; }; }; @@ -1818,6 +1890,16 @@ }; }; + vim-better-whitespace = buildVimPluginFrom2Nix { + name = "vim-better-whitespace-2018-06-11"; + src = fetchFromGitHub { + owner = "ntpeters"; + repo = "vim-better-whitespace"; + rev = "70a38fa9683e8cd0635264dd1b69c6ccbee4e3e7"; + sha256 = "1w16mrvydbvj9msi8p4ym1vasjx6kr4yd8jdhndz0pr3qasn2ix9"; + }; + }; + vim-buffergator = buildVimPluginFrom2Nix { name = "vim-buffergator-2018-05-02"; src = fetchFromGitHub { @@ -1868,6 +1950,16 @@ }; }; + vim-colemak = buildVimPluginFrom2Nix { + name = "vim-colemak-2016-10-16"; + src = fetchFromGitHub { + owner = "kalbasit"; + repo = "vim-colemak"; + rev = "6ac1c0bf362845355c65dfeab9a9987c1b4dc7ec"; + sha256 = "1li7yc5vglrhf7w7i7gs2i7ihdb1bhx85basmpgqlf7790lv1599"; + }; + }; + vim-colors-solarized = buildVimPluginFrom2Nix { name = "vim-colors-solarized-2011-05-09"; src = fetchFromGitHub { @@ -1969,12 +2061,12 @@ }; vim-dispatch = buildVimPluginFrom2Nix { - name = "vim-dispatch-2018-10-02"; + name = "vim-dispatch-2018-10-31"; src = fetchFromGitHub { owner = "tpope"; repo = "vim-dispatch"; - rev = "ab7470d4b03bae9880bf2b5cef60fc0fb51b1101"; - sha256 = "01slb3lcbdba0a4xky6i5xflh1cjm0aq6g8yyfzrgn4w8pq50h9p"; + rev = "d4b8940fd1cd77fc6d300f003b18745a584295b2"; + sha256 = "06g0xc55z9jpa5rl8c5af5apb8b2agahsxxzayl2vn763v9p1n6b"; }; }; @@ -2199,12 +2291,12 @@ }; vim-grepper = buildVimPluginFrom2Nix { - name = "vim-grepper-2018-10-29"; + name = "vim-grepper-2018-10-30"; src = fetchFromGitHub { owner = "mhinz"; repo = "vim-grepper"; - rev = "54cb4c55bd8d80fc046f62b8f6486db2de424399"; - sha256 = "1bzzyh2yav9f54gn17ny8gpi5h70yvjqdyg9lg0b1rglvirjpb1r"; + rev = "a55a14b97dc8ac848eeb95e71d095b75197ba665"; + sha256 = "08p5dp43z9bxllr5fvl3hgnyqyxlvpbfczw1ydncmzvrqqccrx08"; }; }; @@ -2630,12 +2722,12 @@ }; vim-operator-surround = buildVimPluginFrom2Nix { - name = "vim-operator-surround-2017-12-22"; + name = "vim-operator-surround-2018-11-01"; src = fetchFromGitHub { owner = "rhysd"; repo = "vim-operator-surround"; - rev = "001c0da077b5b38a723151b19760d220e02363db"; - sha256 = "0c6w6id57faw6sjf5wvw9qp2a4i7xj65q0c4hjs0spgzycv2wpkh"; + rev = "80337a40a829cfc77b065a71d8a609e2ad7d2c8b"; + sha256 = "0f9shg81bl39hz67ahbi6k6gbhky7gzp8by16fhiz75hbjgp9lq2"; }; }; @@ -2830,12 +2922,12 @@ }; vim-rhubarb = buildVimPluginFrom2Nix { - name = "vim-rhubarb-2018-09-20"; + name = "vim-rhubarb-2018-10-31"; src = fetchFromGitHub { owner = "tpope"; repo = "vim-rhubarb"; - rev = "3a9ddb8ffa46b9fa49f3d9372bbb5d64bdc5fd23"; - sha256 = "1swybc30vyf309w1a34jf94xja1kikvrr3xpixfban50s6aiyips"; + rev = "42072cc349c46db79c0a4411d399a2fe31cfda7e"; + sha256 = "020fshfrwbycs4saci58k625330i2ndfh6lqnxz5h0pp2m5y6jp8"; }; }; @@ -2910,12 +3002,12 @@ }; vim-signify = buildVimPluginFrom2Nix { - name = "vim-signify-2018-10-01"; + name = "vim-signify-2018-10-31"; src = fetchFromGitHub { owner = "mhinz"; repo = "vim-signify"; - rev = "ce2dd937bf3a394ef2fbeda8ab56d2b4437be3c3"; - sha256 = "08ah81bn0cmqphi2lw2y7pjdg8sw2wjwc3p3j6pj0gyqx2bsf408"; + rev = "4e7faba8d32d56d80090dedc5328849a7128b73a"; + sha256 = "0wm1kgklvd4b52lrqb9l7n511p8kaw8y9707962l4nrp8cbrbs31"; }; }; @@ -2980,22 +3072,22 @@ }; vim-speeddating = buildVimPluginFrom2Nix { - name = "vim-speeddating-2017-05-24"; + name = "vim-speeddating-2018-10-31"; src = fetchFromGitHub { owner = "tpope"; repo = "vim-speeddating"; - rev = "a418667791f03694065948342f2d6c5cca8d0f32"; - sha256 = "1wm33izawazh0dy70zjk6rkg30yrlldba5r1gypnr4barps702gw"; + rev = "799cd3473bc64adcb6b556bf349f549570666b62"; + sha256 = "0vyla4lslf1hycx1mvgydhlar2f6bwnwbcp39s1f0m65fqs25rhz"; }; }; vim-startify = buildVimPluginFrom2Nix { - name = "vim-startify-2018-10-02"; + name = "vim-startify-2018-10-31"; src = fetchFromGitHub { owner = "mhinz"; repo = "vim-startify"; - rev = "556bf1d507dfaddfba4b5795716ea20f8ba902ac"; - sha256 = "1jjj7iij08455rlc705m3pnbjg87r2l29jclzkiy7nsvjjh3dfwx"; + rev = "356562270684d8d1647daf0faaf76ac90740990c"; + sha256 = "0qc9ifq4blixda0kyc0zhmqi6cqz44xnk9x17p0p9qqidf1s1l1r"; }; }; @@ -3069,6 +3161,16 @@ }; }; + vim-terraform = buildVimPluginFrom2Nix { + name = "vim-terraform-2018-08-02"; + src = fetchFromGitHub { + owner = "hashivim"; + repo = "vim-terraform"; + rev = "7c11252da45c6508524e022d1f2588134902d8d1"; + sha256 = "1qnjjcin934i7yd2fd0xapraindrpavnik1fasv10x5dw8yzxyrs"; + }; + }; + vim-test = buildVimPluginFrom2Nix { name = "vim-test-2018-10-24"; src = fetchFromGitHub { @@ -3290,12 +3392,12 @@ }; vimtex = buildVimPluginFrom2Nix { - name = "vimtex-2018-10-29"; + name = "vimtex-2018-11-01"; src = fetchFromGitHub { owner = "lervag"; repo = "vimtex"; - rev = "8a32372e4fc3c628d36b8215c6d30bd05eeade28"; - sha256 = "1h1fp0jnv4wj96mam9dgnr5y1i4a4bdi4law3y1qh937bx7nk2vd"; + rev = "2aae07e67034f4806d45500a967bf5775ab22baf"; + sha256 = "1ng1ps5f2vh7xs5lfkid7zwvcjglynw53xvd301zpjbgln2gv3fz"; }; }; @@ -3309,6 +3411,16 @@ }; }; + vissort-vim = buildVimPluginFrom2Nix { + name = "vissort-vim-2014-01-31"; + src = fetchFromGitHub { + owner = "navicore"; + repo = "vissort.vim"; + rev = "75a5b08b64d2f762206bffd294066533891fa03c"; + sha256 = "0a71b22apkhicca9nkd06jlcnqkf583mlpfh2mvl4d474viavqfn"; + }; + }; + vundle = buildVimPluginFrom2Nix { name = "vundle-2018-02-03"; src = fetchFromGitHub { @@ -3389,6 +3501,17 @@ }; }; + yats-vim = buildVimPluginFrom2Nix { + name = "yats-vim-2018-10-17"; + src = fetchFromGitHub { + owner = "HerringtonDarkholme"; + repo = "yats.vim"; + rev = "4675d7ff4b04aa5c5eabd5a1d862fcf78a7cd759"; + sha256 = "1hb36d4lb79dzn4idmar8zq1w4ya4a52a5gpzksj9x9k4fx6gakr"; + fetchSubmodules = true; + }; + }; + youcompleteme = buildVimPluginFrom2Nix { name = "youcompleteme-2018-10-14"; src = fetchFromGitHub { @@ -3439,4 +3562,14 @@ sha256 = "1zp1bz3fzcwvdw3qgiyvmd5imrzjh7rnpnjpxm8mma0kxi2bnl3g"; }; }; + + zoomwintab-vim = buildVimPluginFrom2Nix { + name = "zoomwintab-vim-2018-04-14"; + src = fetchFromGitHub { + owner = "troydm"; + repo = "zoomwintab.vim"; + rev = "5bbbd1f79e40839a34803627e11f9e662f639fe0"; + sha256 = "04pv7mmlz9ccgzfg8sycqxplaxpbyh7pmhwcw47b2xwnazjz49d6"; + }; + }; } \ No newline at end of file diff --git a/pkgs/misc/vim-plugins/overrides.nix b/pkgs/misc/vim-plugins/overrides.nix index 6b8bf42c795fa37503a0a8410287a3a7ca2e7063..39b0246d0d388f5dcef79bf9d7e382542a8a24c5 100644 --- a/pkgs/misc/vim-plugins/overrides.nix +++ b/pkgs/misc/vim-plugins/overrides.nix @@ -9,6 +9,12 @@ , languagetool , Cocoa, CoreFoundation, CoreServices , buildVimPluginFrom2Nix + +# vim-go denpencies +, asmfmt, delve, errcheck, godef, golint +, gomodifytags, gotags, gotools, motion +, gnused, reftools, gogetdoc, gometalinter +, impl, iferr, gocode, gocode-gomod, go-tools }: let @@ -156,6 +162,10 @@ with generated; dependencies = ["self"]; }); + gist-vim = gist-vim.overrideAttrs(old: { + dependencies = ["webapi-vim"]; + }); + gitv = gitv.overrideAttrs(old: { dependencies = ["gitv"]; }); @@ -247,6 +257,37 @@ with generated; dependencies = ["vim-misc"]; }); + # change the go_bin_path to point to a path in the nix store. See the code in + # fatih/vim-go here + # https://github.com/fatih/vim-go/blob/155836d47052ea9c9bac81ba3e937f6f22c8e384/autoload/go/path.vim#L154-L159 + vim-go = vim-go.overrideAttrs(old: let + binPath = lib.makeBinPath [ + asmfmt + delve + errcheck + go-tools + gocode + gocode-gomod + godef + gogetdoc + golint + gometalinter + gomodifytags + gotags + gotools + iferr + impl + motion + reftools + ]; + in { + postPatch = '' + ${gnused}/bin/sed \ + -Ee 's@"go_bin_path", ""@"go_bin_path", "${binPath}"@g' \ + -i autoload/go/config.vim + ''; + }); + vim-grammarous = vim-grammarous.overrideAttrs(old: { # use `:GrammarousCheck` to initialize checking # In neovim, you also want to use set @@ -334,4 +375,13 @@ with generated; }; }); + jedi-vim = jedi-vim.overrideAttrs(old: { + # checking for python3 support in vim would be neat, too, but nobody else seems to care + buildInputs = [ python3Packages.jedi ]; + meta = { + description = "code-completion for python using python-jedi"; + license = stdenv.lib.licenses.mit; + }; + }); + } diff --git a/pkgs/misc/vim-plugins/vim-plugin-names b/pkgs/misc/vim-plugins/vim-plugin-names index bccb97b72d27f9f9b260458c65d7036e6ee22e99..113993cee737afc4a0b6c10ecc8bf6c6d6c1dfce 100644 --- a/pkgs/misc/vim-plugins/vim-plugin-names +++ b/pkgs/misc/vim-plugins/vim-plugin-names @@ -37,14 +37,16 @@ ctjhoa/spacevim ctrlpvim/ctrlp.vim dag/vim2hs dannyob/quickfixstatus +davidhalter/jedi-vim derekelkins/agda-vim derekwyatt/vim-scala dhruvasagar/vim-table-mode digitaltoad/vim-jade +direnv/direnv.vim dleonard0/pony-vim-syntax dracula/vim -dylanaraps/wal.vim drmingdrmer/xptemplate +dylanaraps/wal.vim eagletmt/ghcmod-vim eagletmt/neco-ghc easymotion/vim-easymotion @@ -76,10 +78,12 @@ google/vim-jsonnet google/vim-maktaba gregsexton/gitv guns/xterm-color-table.vim +hashivim/vim-terraform haya14busa/incsearch-easymotion.vim haya14busa/incsearch.vim heavenshell/vim-jsdoc hecal3/vim-leader-guide +HerringtonDarkholme/yats.vim honza/vim-snippets hsanson/vim-android ianks/vim-tsx @@ -117,6 +121,7 @@ junegunn/vim-plug justincampbell/vim-eighties justinmk/vim-dirvish KabbAmine/zeavim.vim +kalbasit/vim-colemak kana/vim-niceblock kana/vim-operator-replace kana/vim-operator-user @@ -163,7 +168,9 @@ MarcWeber/vim-addon-sql MarcWeber/vim-addon-syntax-checker MarcWeber/vim-addon-toggle-buffer MarcWeber/vim-addon-xdebug +markonm/traces.vim martinda/Jenkinsfile-vim-syntax +mattn/emmet-vim mattn/gist-vim mattn/webapi-vim mbbill/undotree @@ -180,8 +187,10 @@ mileszs/ack.vim mindriot101/vim-yapf mkasa/lushtags morhetz/gruvbox +motus/pig.vim mpickering/hlint-refactor-vim nathanaelkane/vim-indent-guides +navicore/vissort.vim nbouscal/vim-stylish-haskell ncm2/ncm2 ncm2/ncm2-bufword @@ -195,6 +204,7 @@ neutaaaaan/iosvkem nixprime/cpsm NLKNguyen/papercolor-theme noc7c9/vim-iced-coffee-script +ntpeters/vim-better-whitespace nvie/vim-flake8 osyo-manga/shabadou.vim osyo-manga/vim-anzu @@ -294,6 +304,7 @@ tpope/vim-tbone tpope/vim-unimpaired tpope/vim-vinegar travitch/hasksyn +troydm/zoomwintab.vim twinside/vim-haskellconceal Twinside/vim-hoogle tyru/caw.vim @@ -310,6 +321,7 @@ vim-pandoc/vim-pandoc-syntax vim-ruby/vim-ruby vim-scripts/align vim-scripts/argtextobj.vim +vim-scripts/autoload_cscope.vim vim-scripts/a.vim vim-scripts/bats.vim vim-scripts/changeColorScheme.vim @@ -317,6 +329,7 @@ vim-scripts/Colour-Sampler-Pack vim-scripts/Improved-AnsiEsc vim-scripts/matchit.zip vim-scripts/mayansmoke +vim-scripts/PreserveNoEOL vim-scripts/random.vim vim-scripts/Rename vim-scripts/ReplaceWithRegister diff --git a/pkgs/misc/vscode-extensions/cpptools/default.nix b/pkgs/misc/vscode-extensions/cpptools/default.nix index 55e126d64a5da1e2165a98004dfb5711756f7fd0..539d03d66fe108f82b11ccda50a52f1d481b6c1c 100644 --- a/pkgs/misc/vscode-extensions/cpptools/default.nix +++ b/pkgs/misc/vscode-extensions/cpptools/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchzip, vscode-utils, jq, mono46, clang-tools, writeScript +{ stdenv, fetchzip, vscode-utils, jq, mono, clang-tools, writeScript , gdbUseFixed ? true, gdb # The gdb default setting will be fixed to specified. Use version from `PATH` otherwise. }: @@ -59,7 +59,7 @@ let export PATH=''${PATH}''${PATH:+:}${gdb}/bin '' else ""} - ${mono46}/bin/mono $BIN_DIR/bin/OpenDebugAD7.exe $* + ${mono}/bin/mono $BIN_DIR/bin/OpenDebugAD7.exe $* ''; in diff --git a/pkgs/misc/vscode-extensions/python/default.nix b/pkgs/misc/vscode-extensions/python/default.nix index a2d04edea19f4143e6a7ec403b82c01ea30e0eef..39e1341e15e222649546d807aac1a2ff133c1506 100644 --- a/pkgs/misc/vscode-extensions/python/default.nix +++ b/pkgs/misc/vscode-extensions/python/default.nix @@ -20,8 +20,8 @@ vscode-utils.buildVscodeMarketplaceExtension { mktplcRef = { name = "python"; publisher = "ms-python"; - version = "2018.9.1"; - sha256 = "050r1rb0xyfikfa6iq741s368xz600pqdk74w6cxszxpy8kl2hng"; + version = "2018.10.1"; + sha256 = "1j9nf09v31lmrjkxf7p1d78d064x6afzh0dvssmk3sjm2c5r432k"; }; postPatch = '' diff --git a/pkgs/os-specific/darwin/apple-sdk/frameworks.nix b/pkgs/os-specific/darwin/apple-sdk/frameworks.nix index 9e47b8d02fdf51840134a5c7a49b14757e416c29..aab2852c1689a09bb30c18a6acccce04ed9c242b 100644 --- a/pkgs/os-specific/darwin/apple-sdk/frameworks.nix +++ b/pkgs/os-specific/darwin/apple-sdk/frameworks.nix @@ -34,7 +34,7 @@ with frameworks; with libs; { CoreMIDIServer = []; CoreMedia = [ ApplicationServices AudioToolbox CoreAudio CF CoreGraphics CoreVideo ]; CoreMediaIO = [ CF CoreMedia ]; - CoreText = [ CF CoreGraphics cf-private ]; + CoreText = [ CF CoreGraphics ]; CoreVideo = [ ApplicationServices CF CoreGraphics IOSurface OpenGL ]; CoreWLAN = [ SecurityFoundation ]; DVComponentGlue = [ CoreServices QuickTime ]; @@ -48,8 +48,7 @@ with frameworks; with libs; { ExceptionHandling = []; FWAUserLib = []; ForceFeedback = [ CF IOKit ]; - # cf-private was moved first in list because of https://github.com/NixOS/nixpkgs/pull/28635 - Foundation = [ cf-private CF libobjc Security ApplicationServices SystemConfiguration ]; + Foundation = [ CF libobjc Security ApplicationServices SystemConfiguration ]; GLKit = [ CF ]; GLUT = [ OpenGL ]; GSS = []; diff --git a/pkgs/os-specific/darwin/trash/default.nix b/pkgs/os-specific/darwin/trash/default.nix index 7f327fcf3d7a03114df8b76dcd7f71d16781f23e..e1606383c0dcc32e9d06b7473597b67bbb86a556 100644 --- a/pkgs/os-specific/darwin/trash/default.nix +++ b/pkgs/os-specific/darwin/trash/default.nix @@ -1,4 +1,5 @@ -{ stdenv, fetchFromGitHub, frameworks, perl } : +{ stdenv, fetchFromGitHub, perl, cf-private, AppKit, Cocoa, ScriptingBridge }: + stdenv.mkDerivation rec { version = "0.9.1"; name = "trash-${version}"; @@ -10,11 +11,11 @@ stdenv.mkDerivation rec { sha256 = "0ylkf7jxfy1pj7i1s48w28kzqjdfd57m2pw0jycsgcj5bkzwll41"; }; - buildInputs = with frameworks; [ - Cocoa - AppKit - ScriptingBridge + buildInputs = [ perl + Cocoa AppKit ScriptingBridge + # Neded for OBJC_CLASS_$_NSMutableArray symbols. + cf-private ]; patches = [ ./trash.diff ]; diff --git a/pkgs/os-specific/linux/ati-drivers/default.nix b/pkgs/os-specific/linux/ati-drivers/default.nix index d5d42faa913e02354a9eb93955ce228f73f258d7..cda7e03cd0666d7b9a1214c379d3596d4928a3d9 100644 --- a/pkgs/os-specific/linux/ati-drivers/default.nix +++ b/pkgs/os-specific/linux/ati-drivers/default.nix @@ -61,8 +61,8 @@ stdenv.mkDerivation rec { src = fetchurl { url = "https://www2.ati.com/drivers/linux/radeon-crimson-15.12-15.302-151217a-297685e.zip"; - sha256 = "0n0ynqmjkjp5dl5q07as7ps3rlyyn63hq4mlwgd7c7v82ky2skvh"; - curlOpts = "--referer http://support.amd.com/en-us/download/desktop?os=Linux+x86_64"; + sha256 = "704f2dfc14681f76dae3b4120c87b1ded33cf43d5a1d800b6de5ca292bb61e58"; + curlOpts = "--referer https://www.amd.com/en/support"; }; hardeningDisable = [ "pic" "format" ]; diff --git a/pkgs/os-specific/linux/autofs/default.nix b/pkgs/os-specific/linux/autofs/default.nix index 60ccad04eea4789e7093bfced0d0d5ab5ee01ed1..38e2fa9bd344c62dd19a1c143f549b68da54720f 100644 --- a/pkgs/os-specific/linux/autofs/default.nix +++ b/pkgs/os-specific/linux/autofs/default.nix @@ -2,14 +2,14 @@ , libxml2, kerberos, kmod, openldap, sssd, cyrus_sasl, openssl }: let - version = "5.1.4"; + version = "5.1.5"; name = "autofs-${version}"; in stdenv.mkDerivation { inherit name; src = fetchurl { url = "mirror://kernel/linux/daemons/autofs/v5/${name}.tar.xz"; - sha256 = "08hpphawzcdibwbhw0r3y7hnfczlazpp90sf3bz2imgza7p31klg"; + sha256 = "1nn0z60f49zchpv8yw67fk8hmbjszpnczs0bj2ql2vgxwbcxmbr3"; }; preConfigure = '' @@ -40,8 +40,8 @@ in stdenv.mkDerivation { meta = { description = "Kernel-based automounter"; - homepage = http://www.linux-consulting.com/Amd_AutoFS/autofs.html; - license = stdenv.lib.licenses.gpl2; + homepage = https://www.kernel.org/pub/linux/daemons/autofs/; + license = stdenv.lib.licenses.gpl2Plus; executables = [ "automount" ]; platforms = stdenv.lib.platforms.linux; }; diff --git a/pkgs/os-specific/linux/bpftrace/bcc-source.patch b/pkgs/os-specific/linux/bpftrace/bcc-source.patch new file mode 100644 index 0000000000000000000000000000000000000000..a4c9947f0c34c4c9e3d4b2452eaab40c2d0ee21a --- /dev/null +++ b/pkgs/os-specific/linux/bpftrace/bcc-source.patch @@ -0,0 +1,32 @@ +From fc0a5bd2ddb5827c5288ee284c1f2d834d79e432 Mon Sep 17 00:00:00 2001 +From: Rodney Lorrimar +Date: Tue, 16 Oct 2018 09:55:59 +1000 +Subject: [PATCH 1/3] Don't use ExternalProject for bcc sources + +--- + CMakeLists.txt | 9 +++++++++ + 1 file changed, 9 insertions(+) + +diff --git a/CMakeLists.txt b/CMakeLists.txt +index eae850a..b20fb33 100644 +--- a/CMakeLists.txt ++++ b/CMakeLists.txt +@@ -31,6 +31,15 @@ if (OFFLINE_BUILDS) + UPDATE_DISCONNECTED 1 + BUILD_COMMAND ${CMAKE_COMMAND} --build . --target bcc-static + ) ++elseif (NIX_BUILDS) ++ include(ExternalProject) ++ ExternalProject_Add(bcc ++ DOWNLOAD_COMMAND rmdir bcc && ln -sf $ENV{bccSrc} bcc ++ STEP_TARGETS build update ++ EXCLUDE_FROM_ALL 1 ++ UPDATE_DISCONNECTED 1 ++ BUILD_COMMAND ${CMAKE_COMMAND} --build . --target bcc-static ++ ) + else() + include(ExternalProject) + ExternalProject_Add(bcc +-- +2.17.1 + diff --git a/pkgs/os-specific/linux/bpftrace/default.nix b/pkgs/os-specific/linux/bpftrace/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..12773a957165f116a9d3cb28170f70d25b226d0b --- /dev/null +++ b/pkgs/os-specific/linux/bpftrace/default.nix @@ -0,0 +1,57 @@ +{ stdenv, fetchFromGitHub +, cmake, pkgconfig, flex, bison +, llvmPackages, kernel, linuxHeaders, elfutils, libelf, bcc +}: + +stdenv.mkDerivation rec { + name = "bpftrace-unstable-${version}"; + version = "2018-10-27"; + + src = fetchFromGitHub { + owner = "iovisor"; + repo = "bpftrace"; + rev = "c07b54f61fd7b7b49e0a254e746d6f442c5d780d"; + sha256 = "1mpcjfyay9akmpqxag2ndwpz1qsdx8ii07jh9fky4w40wi9cipyg"; + }; + + # bpftrace requires an unreleased version of bcc, added to the cmake + # build as an ExternalProject. + # https://github.com/iovisor/bpftrace/issues/184 + bccSrc = fetchFromGitHub { + owner = "iovisor"; + repo = "bcc"; + rev = "afd00154865f3b2da6781cf92cecebaca4853950"; + sha256 = "0ad78smrnipr1f377i5rv6ksns7v2vq54g5badbj5ldqs4x0hygd"; + }; + + buildInputs = [ + llvmPackages.llvm llvmPackages.clang-unwrapped kernel + elfutils libelf bccSrc + ]; + + nativeBuildInputs = [ cmake pkgconfig flex bison ] + # libelf is incompatible with elfutils-libelf + ++ stdenv.lib.filter (x: x != libelf) kernel.moduleBuildDependencies; + + patches = [ + ./bcc-source.patch + # https://github.com/iovisor/bpftrace/issues/184 + ./disable-gtests.patch + ]; + + configurePhase = '' + mkdir build + cd build + cmake ../ \ + -DKERNEL_HEADERS_DIR=${linuxHeaders} \ + -DNIX_BUILDS:BOOL=ON \ + -DCMAKE_INSTALL_PREFIX=$out + ''; + + meta = with stdenv.lib; { + description = "High-level tracing language for Linux eBPF"; + homepage = https://github.com/iovisor/bpftrace; + license = licenses.asl20; + maintainers = with maintainers; [ rvl ]; + }; +} diff --git a/pkgs/os-specific/linux/bpftrace/disable-gtests.patch b/pkgs/os-specific/linux/bpftrace/disable-gtests.patch new file mode 100644 index 0000000000000000000000000000000000000000..941d85a411265972c26c53ec5f43e50200309010 --- /dev/null +++ b/pkgs/os-specific/linux/bpftrace/disable-gtests.patch @@ -0,0 +1,73 @@ +From 221eea24674fffb3b657b2bd0c923071b69d48a7 Mon Sep 17 00:00:00 2001 +From: Rodney Lorrimar +Date: Tue, 16 Oct 2018 09:56:47 +1000 +Subject: [PATCH 2/3] Disable tests + +Would prefer to use gtest library in the normal way rather through +ExternalProject. +--- + CMakeLists.txt | 4 ++-- + tests/CMakeLists.txt | 18 +++++++++++------- + 2 files changed, 13 insertions(+), 9 deletions(-) + +diff --git a/CMakeLists.txt b/CMakeLists.txt +index b20fb33..7025d17 100644 +--- a/CMakeLists.txt ++++ b/CMakeLists.txt +@@ -20,7 +20,7 @@ add_compile_options("-Wno-format-security") + #add_compile_options("-Wstrict-overflow=5") + #add_compile_options("-Wdisabled-optimization") + +-enable_testing() ++# enable_testing() + + if (OFFLINE_BUILDS) + include(ExternalProject) +@@ -79,7 +79,7 @@ include_directories(${CLANG_INCLUDE_DIRS}) + add_subdirectory(src/arch) + add_subdirectory(src/ast) + add_subdirectory(src) +-add_subdirectory(tests) ++# add_subdirectory(tests) + add_subdirectory(resources) + add_subdirectory(tools) + add_subdirectory(man) +diff --git a/tests/CMakeLists.txt b/tests/CMakeLists.txt +index c283efa..6b5bff0 100644 +--- a/tests/CMakeLists.txt ++++ b/tests/CMakeLists.txt +@@ -45,6 +45,8 @@ if (OFFLINE_BUILDS) + EXCLUDE_FROM_ALL 1 + UPDATE_DISCONNECTED 1 + ) ++elseif (NIX_BUILDS) ++ + else() + include(ExternalProject) + ExternalProject_Add(gtest-git +@@ -54,13 +56,15 @@ else() + EXCLUDE_FROM_ALL 1 + ) + endif() +-add_dependencies(bpftrace_test gtest-git-build) +-ExternalProject_Get_Property(gtest-git source_dir binary_dir) +-target_include_directories(bpftrace_test PUBLIC ${source_dir}/googletest/include) +-target_include_directories(bpftrace_test PUBLIC ${source_dir}/googlemock/include) +-target_link_libraries(bpftrace_test ${binary_dir}/googlemock/gtest/libgtest.a) +-target_link_libraries(bpftrace_test ${binary_dir}/googlemock/gtest/libgtest_main.a) +-target_link_libraries(bpftrace_test ${binary_dir}/googlemock/libgmock.a) ++ ++find_library(LIBGTEST "gtest") ++if(LIBGTEST) ++ set(LIBRARY_DEPENDENCIES ++ ${LIBRARY_DEPENDENCIES} ++ ${LIBGTEST} ++ ) ++endif() ++ + target_link_libraries(bpftrace_test ${CMAKE_THREAD_LIBS_INIT}) + + add_test(NAME bpftrace_test COMMAND bpftrace_test) +-- +2.17.1 + diff --git a/pkgs/os-specific/linux/busybox/sandbox-shell.nix b/pkgs/os-specific/linux/busybox/sandbox-shell.nix index de8865ba3acc740e918c130a1ef7299d71218419..c2d82ebc487ac8d6e796d05d215c3e9207694f47 100644 --- a/pkgs/os-specific/linux/busybox/sandbox-shell.nix +++ b/pkgs/os-specific/linux/busybox/sandbox-shell.nix @@ -3,7 +3,7 @@ # Minimal shell for use as basic /bin/sh in sandbox builds busybox.override { # musl roadmap has RISC-V support projected for 1.1.20 - useMusl = !stdenv.hostPlatform.isRiscV; + useMusl = !stdenv.hostPlatform.isRiscV && stdenv.hostPlatform.libc != "bionic"; enableStatic = true; enableMinimal = true; extraConfig = '' diff --git a/pkgs/os-specific/linux/cpuset/default.nix b/pkgs/os-specific/linux/cpuset/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..5791145d52afefabb981951155bdff8127b604fa --- /dev/null +++ b/pkgs/os-specific/linux/cpuset/default.nix @@ -0,0 +1,27 @@ +{ stdenv +, fetchFromGitHub +, python2Packages +}: + +python2Packages.buildPythonApplication rec { + pname = "cpuset"; + version = "1.5.8"; + + propagatedBuildInputs = [ ]; + + makeFlags = [ "prefix=$(out)" ]; + + src = fetchFromGitHub { + owner = "wykurz"; + repo = "cpuset"; + rev = "v${version}"; + sha256 = "19fl2sn470yrnm2q508giggjwy5b6r2gd94gvwfbdlhf0r9dsbbm"; + }; + + meta = with stdenv.lib; { + description = "Cpuset is a Python application that forms a wrapper around the standard Linux filesystem calls to make using the cpusets facilities in the Linux kernel easier."; + homepage = https://github.com/wykurz/cpuset; + license = licenses.gpl2; + maintainers = with maintainers; [ wykurz ]; + }; +} diff --git a/pkgs/os-specific/linux/cryptsetup/default.nix b/pkgs/os-specific/linux/cryptsetup/default.nix index 4eec4754ca9a7878488453610553178afdcd1080..ea255181e0165c7e8e0a202bab1841f4d23a5d72 100644 --- a/pkgs/os-specific/linux/cryptsetup/default.nix +++ b/pkgs/os-specific/linux/cryptsetup/default.nix @@ -5,13 +5,13 @@ assert enablePython -> python2 != null; stdenv.mkDerivation rec { - name = "cryptsetup-2.0.4"; + name = "cryptsetup-2.0.5"; outputs = [ "out" "dev" "man" ]; src = fetchurl { url = "mirror://kernel/linux/utils/cryptsetup/v2.0/${name}.tar.xz"; - sha256 = "0d2p9g2wqcv6l3671gvw96p16jadbgyh21ddy2bhqgi96dq3qflx"; + sha256 = "079hzvjyzbzaakzvqc1fmciwlzllzqyl2949viasb994r2i2rxx0"; }; # Disable 4 test cases that fail in a sandbox diff --git a/pkgs/os-specific/linux/dropwatch/default.nix b/pkgs/os-specific/linux/dropwatch/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..936dbf719a873e94c1aaba1401b8a994547eb72d --- /dev/null +++ b/pkgs/os-specific/linux/dropwatch/default.nix @@ -0,0 +1,35 @@ +{ stdenv, fetchFromGitHub, autoreconfHook, pkgconfig +, libnl, readline, libbfd, ncurses, zlib }: + +stdenv.mkDerivation rec { + pname = "dropwatch"; + version = "1.5"; + name = "${pname}-${version}"; + + src = fetchFromGitHub { + owner = "nhorman"; + repo = pname; + rev = version; + sha256 = "085hyyl28v0vpxfnmzchl97fjfnzj46ynhkg6y4i6h194y0d99m7"; + }; + + nativeBuildInputs = [ autoreconfHook pkgconfig ]; + + buildInputs = [ libbfd libnl ncurses readline zlib ]; + + # To avoid running into https://sourceware.org/bugzilla/show_bug.cgi?id=14243 we need to define: + NIX_CFLAGS_COMPILE = [ + "-DPACKAGE=${pname}" + "-DPACKAGE_VERSION=${version}" + ]; + + enableParallelBuilding = true; + + meta = with stdenv.lib; { + description = "Kernel dropped packet monitor"; + homepage = https://github.com/nhorman/dropwatch; + license = licenses.gpl2; + platforms = platforms.linux; + maintainers = [ maintainers.c0bw3b ]; + }; +} diff --git a/pkgs/os-specific/linux/earlyoom/default.nix b/pkgs/os-specific/linux/earlyoom/default.nix index 0c2f1a872fd9179bfd8e9cde7f45e409c7e69d19..5154f68cde4e5331fac0968e37d8b7c6eb57310d 100644 --- a/pkgs/os-specific/linux/earlyoom/default.nix +++ b/pkgs/os-specific/linux/earlyoom/default.nix @@ -3,13 +3,13 @@ stdenv.mkDerivation rec { name = "earlyoom-${VERSION}"; # This environment variable is read by make to set the build version. - VERSION = "1.1"; + VERSION = "1.2"; src = fetchFromGitHub { owner = "rfjakob"; repo = "earlyoom"; rev = "v${VERSION}"; - sha256 = "1hczn59mmx287hnlhcmpxrf3jy3arllif165dq7b2ha6w3ywngww"; + sha256 = "0bpqlbsjcmcizgw75j1zyw1sp2cgwhaar9y70sibw1km011yqbzd"; }; installPhase = '' diff --git a/pkgs/os-specific/linux/eudev/default.nix b/pkgs/os-specific/linux/eudev/default.nix index 771f012c2c2112b9f0a38cad929d5cdb461ced46..7e8c9e4133803d089b6133d0e97b1e9e7b7c44c6 100644 --- a/pkgs/os-specific/linux/eudev/default.nix +++ b/pkgs/os-specific/linux/eudev/default.nix @@ -3,10 +3,10 @@ let s = # Generated upstream information rec { baseName="eudev"; - version = "3.2.6"; + version = "3.2.7"; name="${baseName}-${version}"; url="http://dev.gentoo.org/~blueness/eudev/eudev-${version}.tar.gz"; - sha256 = "1qdpnvsv3qqwy6jl4i4b1dn212y6nvawpaladb7plfping9p2n46"; + sha256 = "0qphgfw1vh2f73yjggkh5icxfq5gg811a0j6b22zkhaks95n211h"; }; nativeBuildInputs = [ pkgconfig ]; diff --git a/pkgs/os-specific/linux/eventstat/default.nix b/pkgs/os-specific/linux/eventstat/default.nix index 8d96a503c766a2757da0e19f20db053d54f2ef0e..cf3522b5f2facb14934586e920ee1f77d8f92e75 100644 --- a/pkgs/os-specific/linux/eventstat/default.nix +++ b/pkgs/os-specific/linux/eventstat/default.nix @@ -2,10 +2,10 @@ stdenv.mkDerivation rec { name = "eventstat-${version}"; - version = "0.04.04"; + version = "0.04.05"; src = fetchzip { url = "http://kernel.ubuntu.com/~cking/tarballs/eventstat/eventstat-${version}.tar.gz"; - sha256 = "034xpdr3ip4w9k713wjc45x66k3nz6wg9wkzmchrjifxk4dldbd8"; + sha256 = "1s9d6wl7f8cyn21fwj894dhfvl6f6f2h5xv26hg1yk3zfb5rmyn7"; }; buildInputs = [ ncurses ]; installFlags = [ "DESTDIR=$(out)" ]; diff --git a/pkgs/os-specific/linux/firmware/raspberrypi-wireless/default.nix b/pkgs/os-specific/linux/firmware/raspberrypi-wireless/default.nix index eb5b0bd294c87de3cfc0f4e8fff4f2562669f065..89b4f70264eb1e4356887bc6a36ea091a45ba9e0 100644 --- a/pkgs/os-specific/linux/firmware/raspberrypi-wireless/default.nix +++ b/pkgs/os-specific/linux/firmware/raspberrypi-wireless/default.nix @@ -1,52 +1,51 @@ -{ stdenv, fetchurl, dpkg }: +{ stdenv, fetchurl, fetchFromGitHub, dpkg }: stdenv.mkDerivation rec { name = "raspberrypi-wireless-firmware-${version}"; - version = "2018-05-30"; + version = "2018-08-20"; srcs = [ - (fetchurl { - url = "https://archive.raspberrypi.org/debian/pool/main/b/bluez-firmware/bluez-firmware_1.2-3+rpt5.debian.tar.xz"; - sha256 = "06zpyrz6frkgjy26hr3998klnhjdqxwashgjgvj9rgbcqy70nkxg"; + (fetchFromGitHub { + name = "bluez-firmware"; + owner = "RPi-Distro"; + repo = "bluez-firmware"; + rev = "ade2bae1aaaebede09abb8fb546f767a0e4c7804"; + sha256 = "07gm76gxp5anv6paryvxcp34a86fkny8kdlzqhzcpfczzglkp6ag"; }) - (fetchurl { - url = "https://archive.raspberrypi.org/debian/pool/main/f/firmware-nonfree/firmware-brcm80211_20161130-3+rpt3_all.deb"; - sha256 = "10l74ac28baprnsiylf2vy4pkxgb3crixid90ngs6si9smm7rn6z"; + (fetchFromGitHub { + name = "firmware-nonfree"; + owner = "RPi-Distro"; + repo = "firmware-nonfree"; + rev = "b518de45ced519e8f7a499f4778100173402ae43"; + sha256 = "1d5026ic9awji6c67irpwsxpxgsc0dhn11d3abkxi2vvra1pir4g"; }) ]; sourceRoot = "."; + dontBuild = true; # Firmware blobs do not need fixing and should not be modified dontFixup = true; - - # Unpack the debian package - nativeBuildInputs = [ dpkg ]; - unpackCmd = '' - if ! [[ "$curSrc" =~ \.deb$ ]]; then return 1; fi - dpkg -x "$curSrc" . - ''; - installPhase = '' mkdir -p "$out/lib/firmware/brcm" # Wifi firmware - for filename in lib/firmware/brcm/brcmfmac434??-sdio.*; do + for filename in firmware-nonfree/brcm/brcmfmac434??-sdio.*; do cp "$filename" "$out/lib/firmware/brcm" done # Bluetooth firmware - cp broadcom/*.hcd "$out/lib/firmware/brcm" + cp bluez-firmware/broadcom/*.hcd "$out/lib/firmware/brcm" ''; outputHashMode = "recursive"; outputHashAlgo = "sha256"; - outputHash = "1gwzasl5w5nc0awqv3w2081ns63wd1yds0xh0dg95dc6brnqhhf8"; + outputHash = "1s5gb00v42s5izbaw8irs1fwvhh7z9wl07czc0nkw6p91871ivb7"; meta = with stdenv.lib; { description = "Firmware for builtin Wifi/Bluetooth devices in the Raspberry Pi 3 and Zero W"; - homepage = https://archive.raspberrypi.org/debian/pool/main/f/firmware-nonfree/; + homepage = https://github.com/RPi-Distro/firmware-nonfree; license = licenses.unfreeRedistributableFirmware; platforms = platforms.linux; maintainers = with maintainers; [ lopsided98 ]; diff --git a/pkgs/os-specific/linux/fuse/default.nix b/pkgs/os-specific/linux/fuse/default.nix index e3313a676c99b1725b59afc8d282791f6b317eb7..5394edf28773927734a8993d0d6a878579460e90 100644 --- a/pkgs/os-specific/linux/fuse/default.nix +++ b/pkgs/os-specific/linux/fuse/default.nix @@ -11,7 +11,7 @@ in { }; fuse_3 = mkFuse { - version = "3.2.6"; - sha256Hash = "0harsla45b0pj3khgxkcwfr2qd8pahg70ygki9i0a8pzscy64sl2"; + version = "3.3.0"; + sha256Hash = "1pwrnfm8jkxxqhrjz0v1gaw36hshgznchyj961qdk2y697y4zp19"; }; } diff --git a/pkgs/os-specific/linux/hdparm/default.nix b/pkgs/os-specific/linux/hdparm/default.nix index cbdbefeb2a0e434e00e134ef0d0ecdf6f6f52aba..542d99eeabe894948ea2d7ff09d8ee4519ab4319 100644 --- a/pkgs/os-specific/linux/hdparm/default.nix +++ b/pkgs/os-specific/linux/hdparm/default.nix @@ -1,11 +1,11 @@ { stdenv, fetchurl }: stdenv.mkDerivation rec { - name = "hdparm-9.56"; + name = "hdparm-9.58"; src = fetchurl { url = "mirror://sourceforge/hdparm/${name}.tar.gz"; - sha256 = "1np42qyhb503khvacnjcl3hb1dqly68gj0a1xip3j5qhbxlyvybg"; + sha256 = "03z1qm8zbgpxagk3994lvp24yqsshjibkwg05v9p3q1w7y48xrws"; }; diff --git a/pkgs/os-specific/linux/ipset/default.nix b/pkgs/os-specific/linux/ipset/default.nix index d736caa535d4d3f041afe55ae6cb6792a9f93e70..51c6f479504f78a361d0c970c8765a7e4d95ee81 100644 --- a/pkgs/os-specific/linux/ipset/default.nix +++ b/pkgs/os-specific/linux/ipset/default.nix @@ -1,11 +1,11 @@ { stdenv, fetchurl, pkgconfig, libmnl }: stdenv.mkDerivation rec { - name = "ipset-6.38"; + name = "ipset-7.0"; src = fetchurl { url = "http://ipset.netfilter.org/${name}.tar.bz2"; - sha256 = "0i72wcljl0nkpmzc20jcch3hpphrm0qp4v4j4ajamq0zlddn5vyf"; + sha256 = "1bs1qz6cs9z167f36xsbg93fb6dj5bw05shk07fkwkjiglxhzyn6"; }; nativeBuildInputs = [ pkgconfig ]; diff --git a/pkgs/os-specific/linux/irqbalance/default.nix b/pkgs/os-specific/linux/irqbalance/default.nix index 439b2aff6afca97b1a68dfb6c5db214916b4ff73..c4a29d2d601dde9c4a951f0e0f4683938bb401be 100644 --- a/pkgs/os-specific/linux/irqbalance/default.nix +++ b/pkgs/os-specific/linux/irqbalance/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { name = "irqbalance-${version}"; - version = "1.4.0"; + version = "1.5.0"; src = fetchFromGitHub { owner = "irqbalance"; repo = "irqbalance"; rev = "v${version}"; - sha256 = "05q3cdz2a5zp5s2bdz5a80y9vq7awqw9lbvyvh6vjs9a8vg80hwm"; + sha256 = "1wdwch4nb479xhinin4yqvcjah6h09i4nh8fhnsfbn1mzl0hiv09"; }; nativeBuildInputs = [ autoreconfHook pkgconfig ]; diff --git a/pkgs/os-specific/linux/iwd/default.nix b/pkgs/os-specific/linux/iwd/default.nix index f30eac588a2f0f81d488812c09d7256d9ff0f7ff..762b46bb5526236ebeb5637de0c797c0b66550cd 100644 --- a/pkgs/os-specific/linux/iwd/default.nix +++ b/pkgs/os-specific/linux/iwd/default.nix @@ -1,23 +1,24 @@ -{ stdenv, fetchgit, autoreconfHook, coreutils, readline, python3Packages }: +{ stdenv, fetchgit, autoreconfHook, pkgconfig, coreutils, readline, python3Packages }: let ell = fetchgit { url = https://git.kernel.org/pub/scm/libs/ell/ell.git; - rev = "0.11"; - sha256 = "0nifa5w6fxy7cagyas2a0zhcppi83yrcsnnp70ls2rc90x4r1ip8"; + rev = "0.14"; + sha256 = "13jlmdk47pscmfs3c12awfwr3m6ka4fh6fyr9cl1bmqdpwqmmmk6"; }; in stdenv.mkDerivation rec { name = "iwd-${version}"; - version = "0.9"; + version = "0.11"; src = fetchgit { url = https://git.kernel.org/pub/scm/network/wireless/iwd.git; rev = version; - sha256 = "1l1jbwsshjbz32s4rf0zfcn3fd16si4y9qa0zaxp00bfzflnpcd4"; + sha256 = "0q79rdj3h16xdf0g2jdsvb2141z36z89vgzq0qn31pxzhgxdgf7j"; }; nativeBuildInputs = [ autoreconfHook + pkgconfig python3Packages.wrapPython ]; diff --git a/pkgs/os-specific/linux/jfbview/default.nix b/pkgs/os-specific/linux/jfbview/default.nix index dafe9069b5a84c77f26b1680984ea0b0af3972e4..e037ad98226d9410f1ce9b702b15193fd9629d1a 100644 --- a/pkgs/os-specific/linux/jfbview/default.nix +++ b/pkgs/os-specific/linux/jfbview/default.nix @@ -15,13 +15,13 @@ in stdenv.mkDerivation rec { name = "${package}-${version}"; - version = "0.5.5"; + version = "0.5.6"; src = fetchFromGitHub { repo = "JFBView"; owner = "jichu4n"; rev = version; - sha256 = "1w844ha9lp49ik79yfislib34455nl9gcksbx22hiz30gmqwzakz"; + sha256 = "09rcmlf04aka0yzr25imadi0fl4nlbsxcahs7fhvzx4nql4halqw"; }; hardeningDisable = [ "format" ]; diff --git a/pkgs/os-specific/linux/kernel/linux-4.14.nix b/pkgs/os-specific/linux/kernel/linux-4.14.nix index f4a728c9d25fe8024fb4225b6ad3d7cc6c848cd1..ede42ea662840f5d045b9caf06fda22d2eaf4340 100644 --- a/pkgs/os-specific/linux/kernel/linux-4.14.nix +++ b/pkgs/os-specific/linux/kernel/linux-4.14.nix @@ -3,7 +3,7 @@ with stdenv.lib; buildLinux (args // rec { - version = "4.14.78"; + version = "4.14.81"; # modDirVersion needs to be x.y.z, will automatically add .0 if needed modDirVersion = if (modDirVersionArg == null) then concatStrings (intersperse "." (take 3 (splitString "." "${version}.0"))) else modDirVersionArg; @@ -13,6 +13,6 @@ buildLinux (args // rec { src = fetchurl { url = "mirror://kernel/linux/kernel/v4.x/linux-${version}.tar.xz"; - sha256 = "0v2cwykgd2hxlqja4yl4pq45nhd5x8917ixqq7hj1r3ry304vnpl"; + sha256 = "1pjvwyhag2i8i5kns8836ifpk93ssvp35m4rfxhz0kl4ag8dydjb"; }; } // (args.argsOverride or {})) diff --git a/pkgs/os-specific/linux/kernel/linux-4.18.nix b/pkgs/os-specific/linux/kernel/linux-4.18.nix index d6c4b58b980a9f23f741d7421ee862b532979457..dd7a7174b16d030fde01f308a5bcb6d84e021af6 100644 --- a/pkgs/os-specific/linux/kernel/linux-4.18.nix +++ b/pkgs/os-specific/linux/kernel/linux-4.18.nix @@ -3,7 +3,7 @@ with stdenv.lib; buildLinux (args // rec { - version = "4.18.16"; + version = "4.18.19"; # modDirVersion needs to be x.y.z, will automatically add .0 if needed modDirVersion = if (modDirVersionArg == null) then concatStrings (intersperse "." (take 3 (splitString "." "${version}.0"))) else modDirVersionArg; @@ -13,6 +13,6 @@ buildLinux (args // rec { src = fetchurl { url = "mirror://kernel/linux/kernel/v4.x/linux-${version}.tar.xz"; - sha256 = "1rjjkhl8lz4y4sn7icy8mp6p1x7rvapybp51p92sanbjy3i19fmy"; + sha256 = "1g9iasj17i6z5494azsbr4pji7qj27f1fasrx36fbxy4rp1w8rkw"; }; } // (args.argsOverride or {})) diff --git a/pkgs/os-specific/linux/kernel/linux-4.19.nix b/pkgs/os-specific/linux/kernel/linux-4.19.nix index 5aa033348d4ea173302a90122d6fb53657a4789e..82e0a1f4c0843ef7160434320683b5e5bd65e036 100644 --- a/pkgs/os-specific/linux/kernel/linux-4.19.nix +++ b/pkgs/os-specific/linux/kernel/linux-4.19.nix @@ -3,7 +3,7 @@ with stdenv.lib; buildLinux (args // rec { - version = "4.19"; + version = "4.19.2"; # modDirVersion needs to be x.y.z, will automatically add .0 if needed modDirVersion = if (modDirVersionArg == null) then concatStrings (intersperse "." (take 3 (splitString "." "${version}.0"))) else modDirVersionArg; @@ -13,6 +13,6 @@ buildLinux (args // rec { src = fetchurl { url = "mirror://kernel/linux/kernel/v4.x/linux-${version}.tar.xz"; - sha256 = "18a92z17alh5kkvjv7l9z8wk5jgdb6raawdfkpwx9bi8amjzas0c"; + sha256 = "0wyzy8i2lfhz2rf9ilygl2jgz6iyspv2amx2fzm85mwv060py361"; }; } // (args.argsOverride or {})) diff --git a/pkgs/os-specific/linux/kernel/linux-4.4.nix b/pkgs/os-specific/linux/kernel/linux-4.4.nix index f4ef5c6eb1cf6e3a18c96d0d34733ed7c7bcfcdd..7cd431ea105009d089724b43d4e4663f1d2e1589 100644 --- a/pkgs/os-specific/linux/kernel/linux-4.4.nix +++ b/pkgs/os-specific/linux/kernel/linux-4.4.nix @@ -1,11 +1,11 @@ { stdenv, buildPackages, fetchurl, perl, buildLinux, ... } @ args: buildLinux (args // rec { - version = "4.4.162"; + version = "4.4.163"; extraMeta.branch = "4.4"; src = fetchurl { url = "mirror://kernel/linux/kernel/v4.x/linux-${version}.tar.xz"; - sha256 = "0l2agmxzmq89jbh7r00qg4msvmhny40m2jar96fibwpklwd44kki"; + sha256 = "1x1fixnz41q6pq1cms9z48mrac984r675m94fdm08m8ajqxddcv1"; }; } // (args.argsOverride or {})) diff --git a/pkgs/os-specific/linux/kernel/linux-4.9.nix b/pkgs/os-specific/linux/kernel/linux-4.9.nix index 89702c44ccbcdb6ae2b07e77828f937d76ce8ad2..1c5b104496a5b65e76f6a1ffc544df5002de024c 100644 --- a/pkgs/os-specific/linux/kernel/linux-4.9.nix +++ b/pkgs/os-specific/linux/kernel/linux-4.9.nix @@ -1,11 +1,11 @@ { stdenv, buildPackages, fetchurl, perl, buildLinux, ... } @ args: buildLinux (args // rec { - version = "4.9.135"; + version = "4.9.137"; extraMeta.branch = "4.9"; src = fetchurl { url = "mirror://kernel/linux/kernel/v4.x/linux-${version}.tar.xz"; - sha256 = "1kjly5ynsg2jy5nj41z21s8f18wfs4nk843jlmmcazzax6xv08z0"; + sha256 = "1295x8a8k8bdanrpsalnaaq00mk3fl91sr14061lrgwlj0m53ckd"; }; } // (args.argsOverride or {})) diff --git a/pkgs/os-specific/linux/kernel/linux-beagleboard.nix b/pkgs/os-specific/linux/kernel/linux-beagleboard.nix deleted file mode 100644 index e98104f11ca97ba66bca51f7a4b43a4e4794fdf6..0000000000000000000000000000000000000000 --- a/pkgs/os-specific/linux/kernel/linux-beagleboard.nix +++ /dev/null @@ -1,34 +0,0 @@ -{ stdenv, buildPackages, fetchFromGitHub, perl, buildLinux, ubootTools, dtc, ... } @ args: - -let - modDirVersion = "4.14.12"; - tag = "r23"; -in -stdenv.lib.overrideDerivation (buildLinux (args // rec { - version = "${modDirVersion}-ti-${tag}"; - inherit modDirVersion; - - src = fetchFromGitHub { - owner = "beagleboard"; - repo = "linux"; - rev = "${version}"; - sha256 = "07hdv2h12gsgafxsqqr7b0fir10rv9k66riklpjba2cg6x0p2nr4"; - }; - - kernelPatches = args.kernelPatches; - - features = { - efiBootStub = false; - } // (args.features or {}); - - extraMeta.hydraPlatforms = [ "armv7l-linux" ]; -} // (args.argsOverride or {}))) (oldAttrs: { - - # This kernel will run mkuboot.sh. - postPatch = '' - patchShebangs scripts/ - ''; - - nativeBuildInputs = oldAttrs.nativeBuildInputs ++ [ dtc ubootTools ]; - -}) diff --git a/pkgs/os-specific/linux/kernel/linux-hardkernel-4.14.nix b/pkgs/os-specific/linux/kernel/linux-hardkernel-4.14.nix index fc9cb2f238b200bcc6c5ada4ac56a61d0dec6f62..8ad96f4f1bfb2936442bd1194979402b650499d7 100644 --- a/pkgs/os-specific/linux/kernel/linux-hardkernel-4.14.nix +++ b/pkgs/os-specific/linux/kernel/linux-hardkernel-4.14.nix @@ -1,10 +1,10 @@ { stdenv, buildPackages, fetchFromGitHub, perl, buildLinux, libelf, utillinux, ... } @ args: buildLinux (args // rec { - version = "4.14.73-149"; + version = "4.14.78-150"; # modDirVersion needs to be x.y.z. - modDirVersion = "4.14.73"; + modDirVersion = "4.14.78"; # branchVersion needs to be x.y. extraMeta.branch = "4.14"; @@ -13,7 +13,7 @@ buildLinux (args // rec { owner = "hardkernel"; repo = "linux"; rev = version; - sha256 = "1zc5py6v3xyvy6dwghnqb7nsn9l1aib3d96i5bqy9dd56vyiy5m2"; + sha256 = "0139qciaf1vlz41s9idjbcx20c1svrp1l7qaazfkwfx52ghb4pvv"; }; defconfig = "odroidxu4_defconfig"; diff --git a/pkgs/os-specific/linux/kernel/linux-libre.nix b/pkgs/os-specific/linux/kernel/linux-libre.nix index 2195bb7a29ceab29f3c1e30317757c940318db52..31cad25892177514cf8c563aeb75c8ffb1e3b326 100644 --- a/pkgs/os-specific/linux/kernel/linux-libre.nix +++ b/pkgs/os-specific/linux/kernel/linux-libre.nix @@ -1,7 +1,7 @@ { stdenv, lib, fetchsvn, linux , scripts ? fetchsvn { url = "https://www.fsfla.org/svn/fsfla/software/linux-libre/releases/tags/"; - rev = "r15295"; + rev = "15295"; sha256 = "03kqbjy7w9zg6ry86h9sxa33z0rblznhba109lwmjwy0wx7yk1cs"; } , ... diff --git a/pkgs/os-specific/linux/kernel/linux-riscv.nix b/pkgs/os-specific/linux/kernel/linux-riscv.nix deleted file mode 100644 index dbc69144c4da497ee91fcd94e6c162c406a64e34..0000000000000000000000000000000000000000 --- a/pkgs/os-specific/linux/kernel/linux-riscv.nix +++ /dev/null @@ -1,18 +0,0 @@ -{ stdenv, buildPackages, fetchFromGitHub, perl, buildLinux, libelf, utillinux, ... } @ args: - -buildLinux (args // rec { - version = "4.16-rc6"; - modDirVersion = "4.16.0-rc6"; - extraMeta.branch = "4.16"; - - src = fetchFromGitHub { - owner = "shlevy"; - repo ="riscv-linux"; - rev = "a54f259c2adce68e3bd7600be8989bf1ddf9ea3a"; - sha256 = "140w6mj4hm1vf4zsmcr2w5cghcaalbvw5d4m9z57dmq1z5plsl4q"; - }; - - # Should the testing kernels ever be built on Hydra? - extraMeta.hydraPlatforms = []; - -} // (args.argsOverride or {})) diff --git a/pkgs/os-specific/linux/kernel/linux-samus-4.12.nix b/pkgs/os-specific/linux/kernel/linux-samus-4.12.nix deleted file mode 100644 index 0a936c6c053b2d497e081793648daf1174a8d1ba..0000000000000000000000000000000000000000 --- a/pkgs/os-specific/linux/kernel/linux-samus-4.12.nix +++ /dev/null @@ -1,16 +0,0 @@ -{ stdenv, buildPackages, fetchFromGitHub, perl, buildLinux, ncurses, ... } @ args: - -buildLinux (args // rec { - version = "4.12.2"; - extraMeta.branch = "4.12-2"; - - src = - let upstream = fetchFromGitHub { - owner = "raphael"; - repo = "linux-samus"; - rev = "v${extraMeta.branch}"; - sha256 = "1dr74i79p8r13522w2ppi8gnjd9bhngc9d2hsn91ji6f5a8fbxx9"; - }; in "${upstream}/build/linux"; - - extraMeta.platforms = [ "x86_64-linux" ]; -} // (args.argsOverride or {})) diff --git a/pkgs/os-specific/linux/kernel/linux-testing.nix b/pkgs/os-specific/linux/kernel/linux-testing.nix index f866d858eaeb63621f95895706f7910b1ea1a397..9c8d445308753e69dc65a7e937b05dff66561c77 100644 --- a/pkgs/os-specific/linux/kernel/linux-testing.nix +++ b/pkgs/os-specific/linux/kernel/linux-testing.nix @@ -1,13 +1,13 @@ { stdenv, buildPackages, fetchurl, perl, buildLinux, libelf, utillinux, ... } @ args: buildLinux (args // rec { - version = "4.19-rc8"; - modDirVersion = "4.19.0-rc8"; - extraMeta.branch = "4.19"; + version = "4.20-rc2"; + modDirVersion = "4.20.0-rc2"; + extraMeta.branch = "4.20"; src = fetchurl { url = "https://git.kernel.org/torvalds/t/linux-${version}.tar.gz"; - sha256 = "1xw8grzn4i4b2vprfwi4p4003n7rr9725dbiqyrl8w1pm11jwpin"; + sha256 = "0vmzrsfdg8sjyq833szirsv83wj2lgd92hy1fw5rp7xnjavn69hc"; }; # Should the testing kernels ever be built on Hydra? diff --git a/pkgs/os-specific/linux/ndiswrapper/default.nix b/pkgs/os-specific/linux/ndiswrapper/default.nix index e989a7837f9e94cfb561990e54ee5e6589cf16d0..fc9e6ab00dd9461d9e2e8d3181657f4c38f955f8 100644 --- a/pkgs/os-specific/linux/ndiswrapper/default.nix +++ b/pkgs/os-specific/linux/ndiswrapper/default.nix @@ -1,16 +1,20 @@ -{ stdenv, fetchurl, kernel, perl, kmod }: - +{ stdenv, fetchFromGitHub, kernel, perl, kmod, libelf }: +let + version = "1.62-pre"; +in stdenv.mkDerivation { - name = "ndiswrapper-1.59-${kernel.version}"; + name = "ndiswrapper-${version}-${kernel.version}"; + inherit version; hardeningDisable = [ "pic" ]; patches = [ ./no-sbin.patch ]; - # need at least .config and include + # need at least .config and include kernel = kernel.dev; buildPhase = " + cd ndiswrapper echo make KBUILD=$(echo \$kernel/lib/modules/*/build); echo -n $kernel/lib/modules/*/build > kbuild_path export PATH=${kmod}/sbin:$PATH @@ -26,18 +30,20 @@ stdenv.mkDerivation { patchShebangs $out/sbin ''; - # should we use unstable? - src = fetchurl { - url = mirror://sourceforge/ndiswrapper/ndiswrapper-1.59.tar.gz; - sha256 = "1g6lynccyg4m7gd7vhy44pypsn8ifmibq6rqgvc672pwngzx79b6"; + # should we use unstable? + src = fetchFromGitHub { + owner = "pgiri"; + repo = "ndiswrapper"; + rev = "f4d16afb29ab04408d02e38d4ea1148807778e21"; + sha256 = "0iaw0vhchmqf1yh14v4a6whnbg4sx1hag8a4hrsh4fzgw9fx0ij4"; }; - buildInputs = [ perl ]; + buildInputs = [ perl libelf ]; - meta = { + meta = { description = "Ndis driver wrapper for the Linux kernel"; homepage = https://sourceforge.net/projects/ndiswrapper; license = "GPL"; - broken = true; + platforms = [ "i686-linux" "x86_64-linux" ]; }; } diff --git a/pkgs/os-specific/linux/ndiswrapper/no-sbin.patch b/pkgs/os-specific/linux/ndiswrapper/no-sbin.patch index cfc048d772bd36bd0239b1b48ed01d1cb499e7fe..34965540d24809377329ea696c7255f051adcaff 100644 --- a/pkgs/os-specific/linux/ndiswrapper/no-sbin.patch +++ b/pkgs/os-specific/linux/ndiswrapper/no-sbin.patch @@ -1,7 +1,8 @@ -diff -Naur ndiswrapper-1.59-orig/driver/Makefile ndiswrapper-1.59/driver/Makefile ---- ndiswrapper-1.59-orig/driver/Makefile 2013-11-28 14:42:35.000000000 -0500 -+++ ndiswrapper-1.59/driver/Makefile 2014-01-04 18:31:43.242377375 -0500 -@@ -191,7 +191,7 @@ +diff --git a/ndiswrapper/driver/Makefile b/ndiswrapper/driver/Makefile +index bf42f7bc..ad23aa2d 100644 +--- a/ndiswrapper/driver/Makefile ++++ b/ndiswrapper/driver/Makefile +@@ -191,7 +191,7 @@ clean: rm -rf .tmp_versions install: config_check $(MODULE) diff --git a/pkgs/os-specific/linux/nvidia-x11/default.nix b/pkgs/os-specific/linux/nvidia-x11/default.nix index 44598588db9dc4e964365df01b849de5751124b6..97e5b3aa70ad39222133c3c32c2855692549de26 100644 --- a/pkgs/os-specific/linux/nvidia-x11/default.nix +++ b/pkgs/os-specific/linux/nvidia-x11/default.nix @@ -19,10 +19,10 @@ rec { stable = if stdenv.hostPlatform.system == "x86_64-linux" then stable_410 else stable_390; stable_410 = generic { - version = "410.66"; - sha256_64bit = "05xjzvj0fgmkpz36dbd7hy2vzl6xxiflzx7kml3k7ad9gy2svdlg"; - settingsSha256 = "1nsxz1byshgjs3c03lyx6ya36dp0f2vg2l0d9pkh1i6cpzkp53kz"; - persistencedSha256 = "0m4wdpb8w4y323d8py105p9hizwmf2ai8frkl7h77sn3ski17zw6"; + version = "410.73"; + sha256_64bit = "07pzq8rvbsx3v8rgz98amyw0k1mn5mkygpd1q5gfn6r0h7vrrg5y"; + settingsSha256 = "19xc10b0c074wb9fv9n04dvmi8hrwl6srvvyrjfyj92gch49x6hw"; + persistencedSha256 = "0vhr7pysv4vk7v96yima0i9zsvvgxaxihjzxlfifpsdki57n2jz7"; }; # Last one supporting x86 diff --git a/pkgs/os-specific/linux/pmtools/default.nix b/pkgs/os-specific/linux/pmtools/default.nix deleted file mode 100644 index a284924f0058ad4ba4f0906bfb3ddae8d6b19efd..0000000000000000000000000000000000000000 --- a/pkgs/os-specific/linux/pmtools/default.nix +++ /dev/null @@ -1,23 +0,0 @@ -{ stdenv, fetchurl }: - -stdenv.mkDerivation rec { - name = "pmtools-20071116"; - - src = fetchurl { - url = "http://www.lesswatts.org/patches/linux_acpi/${name}.tar.gz"; - sha256 = "91751774976e39f6237efd0326eb35196a9346220b92ad35894a33283e872748"; - }; - - installPhase = '' - mkdir -p $out/bin $out/share/pmtools - cp acpidump/acpidump acpixtract/acpixtract madt/madt $out/bin/ - cp README $out/share/pmtools/ - ''; - - meta = { - homepage = http://www.lesswatts.org/projects/acpi/utilities.php; - description = "Linux ACPI utilities"; - license = stdenv.lib.licenses.gpl2; - platforms = stdenv.lib.platforms.linux; - }; -} diff --git a/pkgs/os-specific/linux/smem/default.nix b/pkgs/os-specific/linux/smem/default.nix index ede8d425f12d3b5e922ebd2df911552868da04db..de12b3719af3f0eb4aed6fe7a544a075a9e9e15b 100644 --- a/pkgs/os-specific/linux/smem/default.nix +++ b/pkgs/os-specific/linux/smem/default.nix @@ -1,31 +1,26 @@ { lib, stdenv, fetchurl, python }: stdenv.mkDerivation rec { - name = "smem-1.4"; + name = "smem-${version}"; + version = "1.5"; src = fetchurl { - url = "https://www.selenic.com/smem/download/${name}.tar.gz"; - sha256 = "1v31vy23s7szl6vdrllq9zbg58bp36jf5xy3fikjfg6gyiwgia9f"; + url = "https://selenic.com/repo/smem/archive/${version}.tar.bz2"; + sha256 = "19ibv1byxf2b68186ysrgrhy5shkc5mc69abark1h18yigp3j34m"; }; buildInputs = [ python ]; - buildPhase = - '' - gcc -O2 smemcap.c -o smemcap - ''; + makeFlags = [ "smemcap" ]; installPhase = '' - mkdir -p $out/bin - cp smem smemcap $out/bin/ - - mkdir -p $out/share/man/man8 - cp smem.8 $out/share/man/man8/ + install -Dm555 -t $out/bin/ smem smemcap + install -Dm444 -t $out/share/man/man8/ smem.8 ''; meta = { - homepage = http://www.selenic.com/smem/; + homepage = https://www.selenic.com/smem/; description = "A memory usage reporting tool that takes shared memory into account"; platforms = lib.platforms.linux; maintainers = [ lib.maintainers.eelco ]; diff --git a/pkgs/os-specific/linux/systemd/default.nix b/pkgs/os-specific/linux/systemd/default.nix index db64b8e6f6de6070daa36452bec8f8f82c76042a..1d45109ac852d3d94a7ed91245e04c3a43fb2787 100644 --- a/pkgs/os-specific/linux/systemd/default.nix +++ b/pkgs/os-specific/linux/systemd/default.nix @@ -1,4 +1,4 @@ -{ stdenv, lib, fetchFromGitHub, fetchpatch, pkgconfig, intltool, gperf, libcap, kmod +{ stdenv, lib, fetchFromGitHub, fetchpatch, fetchurl, pkgconfig, intltool, gperf, libcap, kmod , xz, pam, acl, libuuid, m4, utillinux, libffi , glib, kbd, libxslt, coreutils, libgcrypt, libgpgerror, libidn2, libapparmor , audit, lz4, bzip2, libmicrohttpd, pcre2 @@ -30,6 +30,22 @@ in stdenv.mkDerivation rec { sha256 = "1xci0491j95vdjgs397n618zii3sgwnvanirkblqqw6bcvcjvir1"; }; + prePatch = let + # Upstream's maintenance branches are still too intrusive: + # https://github.com/systemd/systemd-stable/tree/v239-stable + patches-deb = fetchurl { + # When the URL disappears, it typically means that Debian has new patches + # (probably security) and updating to new tarball will apply them as well. + name = "systemd-debian-patches.tar.xz"; + url = mirror://debian/pool/main/s/systemd/systemd_239-11~bpo9+1.debian.tar.xz; + sha256 = "136f6p4jbi4z94mf4g099dfcacwka8jwhza0wxxw2q5l5q3xiysh"; + }; + # Note that we skip debian-specific patches, i.e. ./debian/patches/debian/* + in '' + tar xf ${patches-deb} + patches="$patches $(cat debian/patches/series | grep -v '^debian/' | sed 's|^|debian/patches/|')" + ''; + outputs = [ "out" "lib" "man" "dev" ]; nativeBuildInputs = diff --git a/pkgs/os-specific/linux/thunderbolt/default.nix b/pkgs/os-specific/linux/thunderbolt/default.nix index ac687de8c9ab5e3c772eebb9178b9c71bb1c0216..faf47c96a5e6e1cd81da5ed2b2282ae9cddac764 100644 --- a/pkgs/os-specific/linux/thunderbolt/default.nix +++ b/pkgs/os-specific/linux/thunderbolt/default.nix @@ -16,22 +16,13 @@ stdenv.mkDerivation rec { sha256 = "02w1bfm7xvq0dzkhwqiq0camkzz9kvciyhnsis61c8vzp39cwx0x"; }; - buildInputs = [ - boost - cmake - pkgconfig - txt2tags - ]; + nativeBuildInputs = [ cmake pkgconfig txt2tags ]; + buildInputs = [ boost ]; - # These can't go in the normal nix cmakeFlags because $out needs to be - # expanded by the shell, not by cmake or nix. $ENV{out} doesn't work right - # either; it results in /build/source/build//nix/store/blahblahblahblah/bin/ - # TODO: use ${placeholder "out"} when possible. - # See https://github.com/NixOS/nixpkgs/pull/37693 - preConfigure = '' - cmakeFlags+=" -DUDEV_BIN_DIR=$out/bin" - cmakeFlags+=" -DUDEV_RULES_DIR=$out/etc/udev/rules.d" - ''; + cmakeFlags = [ + "-DUDEV_BIN_DIR=${placeholder "out"}/bin" + "-DUDEV_RULES_DIR=${placeholder "out"}/etc/udev/rules.d" + ]; meta = { description = "Thunderbolt(TM) user-space components"; diff --git a/pkgs/os-specific/linux/upower/default.nix b/pkgs/os-specific/linux/upower/default.nix index 629f61bf5b167f7ef589e822711c7263f2671208..6c6e411000ac1b9b9bb765ecab823e9af0255764 100644 --- a/pkgs/os-specific/linux/upower/default.nix +++ b/pkgs/os-specific/linux/upower/default.nix @@ -4,11 +4,11 @@ }: stdenv.mkDerivation rec { - name = "upower-0.99.7"; + name = "upower-0.99.9"; src = fetchurl { - url = "https://upower.freedesktop.org/releases/${name}.tar.xz"; - sha256 = "00d4830yvg84brdhz4kn60lr3r8rn2y8gdbhmhxm78i5mgvc5g14"; + url = https://gitlab.freedesktop.org/upower/upower/uploads/2282c7c0e53fb31816b824c9d1f547e8/upower-0.99.9.tar.xz; + sha256 = "046ix7j7hmb7ycv8v54668kjsrgjhzwxn299c1d87vdnkd38kfh1"; }; buildInputs = diff --git a/pkgs/servers/asterisk/default.nix b/pkgs/servers/asterisk/default.nix index b2b681bcc8bd910495f5ca93187890dc88438bd5..37f93c8e87e8a10fb93ca826993c674a016bb6b1 100644 --- a/pkgs/servers/asterisk/default.nix +++ b/pkgs/servers/asterisk/default.nix @@ -76,7 +76,7 @@ let mp3-202 = fetchsvn { url = http://svn.digium.com/svn/thirdparty/mp3/trunk; - rev = 202; + rev = "202"; sha256 = "1s9idx2miwk178sa731ig9r4fzx4gy1q8xazfqyd7q4lfd70s1cy"; }; diff --git a/pkgs/servers/clickhouse/default.nix b/pkgs/servers/clickhouse/default.nix index 720898196c856d868ba44b2dec0ac0d6659a8ef0..88907231d6ed2c89b385c89395d2b853b395ef1e 100644 --- a/pkgs/servers/clickhouse/default.nix +++ b/pkgs/servers/clickhouse/default.nix @@ -6,13 +6,13 @@ stdenv.mkDerivation rec { name = "clickhouse-${version}"; - version = "18.12.17"; + version = "18.14.9"; src = fetchFromGitHub { owner = "yandex"; repo = "ClickHouse"; rev = "v${version}-stable"; - sha256 = "0gkad6x6jlih30wal8nilhfqr3z22dzgz6m22pza3bhaba2ikk53"; + sha256 = "1dsqwihh48fgsjy3jmfjk5271dw3052agw5wpfdm054nkkych86i"; }; nativeBuildInputs = [ cmake libtool ninja ]; diff --git a/pkgs/servers/consul/Gemfile b/pkgs/servers/consul/Gemfile deleted file mode 100644 index 0e782af6b0001ff6c7e8703ffaf430abdc2a3106..0000000000000000000000000000000000000000 --- a/pkgs/servers/consul/Gemfile +++ /dev/null @@ -1,5 +0,0 @@ -# A sample Gemfile -source "https://rubygems.org" - -gem "uglifier" -gem "sass" diff --git a/pkgs/servers/consul/Gemfile.lock b/pkgs/servers/consul/Gemfile.lock deleted file mode 100644 index 60a565f6695185e4847000f42fd287ba8118d4e4..0000000000000000000000000000000000000000 --- a/pkgs/servers/consul/Gemfile.lock +++ /dev/null @@ -1,25 +0,0 @@ -GEM - remote: https://rubygems.org/ - specs: - execjs (2.7.0) - ffi (1.9.23) - rb-fsevent (0.10.3) - rb-inotify (0.9.10) - ffi (>= 0.5.0, < 2) - sass (3.5.6) - sass-listen (~> 4.0.0) - sass-listen (4.0.0) - rb-fsevent (~> 0.9, >= 0.9.4) - rb-inotify (~> 0.9, >= 0.9.7) - uglifier (4.1.10) - execjs (>= 0.3.0, < 3) - -PLATFORMS - ruby - -DEPENDENCIES - sass - uglifier - -BUNDLED WITH - 1.14.6 diff --git a/pkgs/servers/consul/default.nix b/pkgs/servers/consul/default.nix index 5cf192791000c1fff4657b02715d6823df1d0301..d1dcd78667f039930998671ad351dacde5e48f0c 100644 --- a/pkgs/servers/consul/default.nix +++ b/pkgs/servers/consul/default.nix @@ -1,22 +1,27 @@ -{ stdenv, buildGoPackage, consul-ui, fetchFromGitHub }: +{ stdenv, buildGoPackage, fetchFromGitHub }: buildGoPackage rec { name = "consul-${version}"; - version = "0.9.3"; + version = "1.3.0"; rev = "v${version}"; goPackagePath = "github.com/hashicorp/consul"; + # Note: Currently only release tags are supported, because they have the Consul UI + # vendored. See + # https://github.com/NixOS/nixpkgs/pull/48714#issuecomment-433454834 + # If you want to use a non-release commit as `src`, you probably want to improve + # this derivation so that it can build the UI's JavaScript from source. + # See https://github.com/NixOS/nixpkgs/pull/49082 for something like that. + # Or, if you want to patch something that doesn't touch the UI, you may want + # to apply your changes as patches on top of a release commit. src = fetchFromGitHub { owner = "hashicorp"; repo = "consul"; inherit rev; - sha256 = "1176frp7kimpycsmz9wrbizf46jgxr8jq7hz5w4q1x90lswvrxv3"; + sha256 = "1zv84snvrjm74w3v3rr27linsbxj00m73xd047sb78a4766xs2h0"; }; - # Keep consul.ui for backward compatability - passthru.ui = consul-ui; - preBuild = '' buildFlagsArray+=("-ldflags" "-X github.com/hashicorp/consul/version.GitDescribe=v${version} -X github.com/hashicorp/consul/version.Version=${version} -X github.com/hashicorp/consul/version.VersionPrerelease=") ''; @@ -26,6 +31,6 @@ buildGoPackage rec { homepage = https://www.consul.io/; platforms = platforms.linux ++ platforms.darwin; license = licenses.mpl20; - maintainers = with maintainers; [ pradeepchhetri ]; + maintainers = with maintainers; [ pradeepchhetri vdemeester nh2 ]; }; } diff --git a/pkgs/servers/consul/gemset.nix b/pkgs/servers/consul/gemset.nix deleted file mode 100644 index 2a5425ccf5f52f4b19dbbab2032b1b961b811a4c..0000000000000000000000000000000000000000 --- a/pkgs/servers/consul/gemset.nix +++ /dev/null @@ -1,62 +0,0 @@ -{ - execjs = { - source = { - remotes = ["https://rubygems.org"]; - sha256 = "1yz55sf2nd3l666ms6xr18sm2aggcvmb8qr3v53lr4rir32y1yp1"; - type = "gem"; - }; - version = "2.7.0"; - }; - ffi = { - source = { - remotes = ["https://rubygems.org"]; - sha256 = "0zw6pbyvmj8wafdc7l5h7w20zkp1vbr2805ql5d941g2b20pk4zr"; - type = "gem"; - }; - version = "1.9.23"; - }; - rb-fsevent = { - source = { - remotes = ["https://rubygems.org"]; - sha256 = "1lm1k7wpz69jx7jrc92w3ggczkjyjbfziq5mg62vjnxmzs383xx8"; - type = "gem"; - }; - version = "0.10.3"; - }; - rb-inotify = { - dependencies = ["ffi"]; - source = { - remotes = ["https://rubygems.org"]; - sha256 = "0yfsgw5n7pkpyky6a9wkf1g9jafxb0ja7gz0qw0y14fd2jnzfh71"; - type = "gem"; - }; - version = "0.9.10"; - }; - sass = { - dependencies = ["sass-listen"]; - source = { - remotes = ["https://rubygems.org"]; - sha256 = "19wyzp9qsg8hdkkxlsv713w0qmy66qrdp0shj42587ssx4qhrlag"; - type = "gem"; - }; - version = "3.5.6"; - }; - sass-listen = { - dependencies = ["rb-fsevent" "rb-inotify"]; - source = { - remotes = ["https://rubygems.org"]; - sha256 = "0xw3q46cmahkgyldid5hwyiwacp590zj2vmswlll68ryvmvcp7df"; - type = "gem"; - }; - version = "4.0.0"; - }; - uglifier = { - dependencies = ["execjs"]; - source = { - remotes = ["https://rubygems.org"]; - sha256 = "0dycp9c5xiricla6sgvg0vf22i3axs5k1v1607dvl7nv1xkkaczi"; - type = "gem"; - }; - version = "4.1.10"; - }; -} \ No newline at end of file diff --git a/pkgs/servers/consul/ui-no-bundle-exec.patch b/pkgs/servers/consul/ui-no-bundle-exec.patch deleted file mode 100644 index 5707b871049b7412b25d79559617f3f0e54ace9b..0000000000000000000000000000000000000000 --- a/pkgs/servers/consul/ui-no-bundle-exec.patch +++ /dev/null @@ -1,17 +0,0 @@ -diff --git a/ui/scripts/dist.sh b/ui/scripts/dist.sh -index 0ad6e28e..db340da0 100755 ---- a/ui/scripts/dist.sh -+++ b/ui/scripts/dist.sh -@@ -15,10 +15,9 @@ DEPLOY="../pkg/web_ui" - rm -rf $DEPLOY - mkdir -p $DEPLOY - --bundle check >/dev/null 2>&1 || bundle install --bundle exec sass styles/base.scss static/base.css -+sass styles/base.scss static/base.css - --bundle exec ruby scripts/compile.rb -+ruby scripts/compile.rb - - # Copy into deploy - shopt -s dotglob diff --git a/pkgs/servers/consul/ui.nix b/pkgs/servers/consul/ui.nix deleted file mode 100644 index da9b518bad7344bfc3f5702e0861c2f5e6f16cc0..0000000000000000000000000000000000000000 --- a/pkgs/servers/consul/ui.nix +++ /dev/null @@ -1,41 +0,0 @@ -{ stdenv, consul, ruby, bundlerEnv, zip, nodejs }: - -let - # `sass` et al - gems = bundlerEnv { - name = "consul-ui-deps"; - gemdir = ./.; - }; -in - -stdenv.mkDerivation { - name = "consul-ui-${consul.version}"; - - src = consul.src; - - buildInputs = [ ruby gems zip nodejs ]; - - patches = [ ./ui-no-bundle-exec.patch ]; - - postPatch = "patchShebangs ./ui/scripts/dist.sh"; - - buildPhase = '' - # Build ui static files - cd ui - make dist - ''; - - installPhase = '' - # Install ui static files - mkdir -p $out - mv ../pkg/web_ui/* $out - ''; - - meta = with stdenv.lib; { - homepage = https://www.consul.io/; - description = "A tool for service discovery, monitoring and configuration"; - maintainers = with maintainers; [ cstrahan wkennington ]; - license = licenses.mpl20 ; - platforms = platforms.unix; - }; -} diff --git a/pkgs/servers/dns/bind/default.nix b/pkgs/servers/dns/bind/default.nix index 10236ee55e8c77ce9b3b44644db0e42ccb47cb9a..49d11a51617c08e2d2da5b54aa7a42487027b88f 100644 --- a/pkgs/servers/dns/bind/default.nix +++ b/pkgs/servers/dns/bind/default.nix @@ -8,14 +8,14 @@ assert enableSeccomp -> libseccomp != null; assert enablePython -> python3 != null; -let version = "9.12.2-P2"; in +let version = "9.12.3"; in stdenv.mkDerivation rec { name = "bind-${version}"; src = fetchurl { url = "https://ftp.isc.org/isc/bind9/${version}/${name}.tar.gz"; - sha256 = "0gk9vwqlbdmn10m21f2awvmiccfbadvcwi8zsgm91awbx4k7h0l7"; + sha256 = "0f5rjs6zsq8sp6iv5r4q5y65xv05dk2sgvsj6lcir3i564k7d00f"; }; outputs = [ "out" "lib" "dev" "man" "dnsutils" "host" ]; diff --git a/pkgs/servers/dns/doh-proxy/default.nix b/pkgs/servers/dns/doh-proxy/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..ac44dbbf04d16b1df6b0e8080caec00e0a463b9f --- /dev/null +++ b/pkgs/servers/dns/doh-proxy/default.nix @@ -0,0 +1,22 @@ +{ lib, python3Packages }: + +python3Packages.buildPythonApplication rec { + pname = "doh-proxy"; + version = "0.0.8"; + + src = python3Packages.fetchPypi { + inherit pname version; + sha256 = "0mfl84mcklby6cnsw29kpcxj7mh1cx5yw6mjs4sidr1psyni7x6c"; + }; + + propagatedBuildInputs = with python3Packages; + [ aioh2 dnspython aiohttp-remotes pytestrunner flake8 ]; + doCheck = false; # Trouble packaging unittest-data-provider + + meta = with lib; { + homepage = https://facebookexperimental.github.io/doh-proxy/; + description = "A proof of concept DNS-Over-HTTPS proxy"; + license = licenses.bsd3; + maintainers = [ maintainers.qyliss ]; + }; +} diff --git a/pkgs/servers/dns/knot-resolver/default.nix b/pkgs/servers/dns/knot-resolver/default.nix index b760b080ab78aac2882f15222dbb231c715ac36a..ceefa542e6a42eadc0bc3a797d00d9e70be79326 100644 --- a/pkgs/servers/dns/knot-resolver/default.nix +++ b/pkgs/servers/dns/knot-resolver/default.nix @@ -12,11 +12,11 @@ inherit (stdenv.lib) optional concatStringsSep; unwrapped = stdenv.mkDerivation rec { name = "knot-resolver-${version}"; - version = "3.0.0"; + version = "3.1.0"; src = fetchurl { url = "https://secure.nic.cz/files/knot-resolver/${name}.tar.xz"; - sha256 = "68a0137e0e15061ee7dec53a2e424aa3266611720db3843853c6e7774a414f40"; + sha256 = "8f3deba4695784a666cde317bc6af80ecf42ce1047b01f4b9c582fdc021c7492"; }; outputs = [ "out" "dev" ]; diff --git a/pkgs/servers/dns/pdns-recursor/default.nix b/pkgs/servers/dns/pdns-recursor/default.nix index 933609ac268a7aec484461543b2abc8288d3725d..1f8429a60d1bd7e8921c23e28ce6e2863e4d1868 100644 --- a/pkgs/servers/dns/pdns-recursor/default.nix +++ b/pkgs/servers/dns/pdns-recursor/default.nix @@ -8,11 +8,11 @@ with stdenv.lib; stdenv.mkDerivation rec { name = "pdns-recursor-${version}"; - version = "4.1.4"; + version = "4.1.7"; src = fetchurl { url = "https://downloads.powerdns.com/releases/pdns-recursor-${version}.tar.bz2"; - sha256 = "0l5mf45r3x1z5mg95zpbyms88zv307hsrrx4h6jm9zm3pr9l77xi"; + sha256 = "0syvxlfxy3h2x1kvqkj7qqk8k85y42qjq30pcqqmy69v3pymq14s"; }; nativeBuildInputs = [ pkgconfig ]; diff --git a/pkgs/servers/dns/powerdns/default.nix b/pkgs/servers/dns/powerdns/default.nix index 9d3db625d660a6b3aaefb66c38c6543ce2113c0b..f9f94f002a36fc2044ca8995c1856dae5e3ffef2 100644 --- a/pkgs/servers/dns/powerdns/default.nix +++ b/pkgs/servers/dns/powerdns/default.nix @@ -5,11 +5,11 @@ stdenv.mkDerivation rec { name = "powerdns-${version}"; - version = "4.1.4"; + version = "4.1.5"; src = fetchurl { url = "https://downloads.powerdns.com/releases/pdns-${version}.tar.bz2"; - sha256 = "1m9yhzrxh315gv855c590b2qc8bx31rrnl72pqxrnlix701qch79"; + sha256 = "12jgkdsh6hzaznq6y9y7hfdpjhnn7ar2qn7x706k9iyqcq55faf3"; }; nativeBuildInputs = [ pkgconfig ]; diff --git a/pkgs/servers/ftp/bftpd/default.nix b/pkgs/servers/ftp/bftpd/default.nix index c35177e6aa90edd80cce1a74b03d4b0ea264735f..02bf714a42bf256f507a093c257d0c5cef3d4864 100644 --- a/pkgs/servers/ftp/bftpd/default.nix +++ b/pkgs/servers/ftp/bftpd/default.nix @@ -5,11 +5,11 @@ let in stdenv.mkDerivation rec { name = "${pname}-${version}"; - version = "4.9"; + version = "5.0"; src = fetchurl { url = "mirror://sourceforge/project/${pname}/${pname}/${name}/${name}.tar.gz"; - sha256 = "13pjil9cjggpi773m0516lszyqvwzlgcrmmj8yn9nc24rbxwvn6d"; + sha256 = "1qagqsbg7zblkhg3vrj47k5f1q09r4az7gna86rxf253kmg90yqp"; }; preConfigure = '' diff --git a/pkgs/servers/home-assistant/component-packages.nix b/pkgs/servers/home-assistant/component-packages.nix index 611fabc43011950ed1273f8f2e35bf8389e6640f..f8f029257a4477135e663121832c8ad3f1cee98e 100644 --- a/pkgs/servers/home-assistant/component-packages.nix +++ b/pkgs/servers/home-assistant/component-packages.nix @@ -2,7 +2,7 @@ # Do not edit! { - version = "0.81.1"; + version = "0.82.0"; components = { "abode" = ps: with ps; [ ]; "ads" = ps: with ps; [ ]; @@ -20,7 +20,7 @@ "alarm_control_panel.envisalink" = ps: with ps; [ ]; "alarm_control_panel.homematicip_cloud" = ps: with ps; [ ]; "alarm_control_panel.ialarm" = ps: with ps; [ ]; - "alarm_control_panel.ifttt" = ps: with ps; [ aiohttp-cors ]; + "alarm_control_panel.ifttt" = ps: with ps; [ aiohttp-cors pyfttt ]; "alarm_control_panel.manual" = ps: with ps; [ ]; "alarm_control_panel.manual_mqtt" = ps: with ps; [ paho-mqtt ]; "alarm_control_panel.mqtt" = ps: with ps; [ paho-mqtt ]; @@ -137,6 +137,7 @@ "binary_sensor.rpi_gpio" = ps: with ps; [ ]; "binary_sensor.rpi_pfio" = ps: with ps; [ ]; "binary_sensor.satel_integra" = ps: with ps; [ ]; + "binary_sensor.sense" = ps: with ps; [ ]; "binary_sensor.skybell" = ps: with ps; [ ]; "binary_sensor.sleepiq" = ps: with ps; [ ]; "binary_sensor.spc" = ps: with ps; [ ]; @@ -317,6 +318,7 @@ "deconz" = ps: with ps; [ ]; "deconz.config_flow" = ps: with ps; [ ]; "deconz.const" = ps: with ps; [ ]; + "deconz.gateway" = ps: with ps; [ ]; "demo" = ps: with ps; [ aiohttp-cors ]; "device_sun_light_trigger" = ps: with ps; [ ]; "device_tracker" = ps: with ps; [ ]; @@ -326,7 +328,7 @@ "device_tracker.automatic" = ps: with ps; [ aiohttp-cors ]; "device_tracker.bbox" = ps: with ps; [ ]; "device_tracker.bluetooth_le_tracker" = ps: with ps; [ ]; - "device_tracker.bluetooth_tracker" = ps: with ps; [ ]; + "device_tracker.bluetooth_tracker" = ps: with ps; [ bt_proximity ]; "device_tracker.bmw_connected_drive" = ps: with ps; [ ]; "device_tracker.bt_home_hub_5" = ps: with ps; [ ]; "device_tracker.bt_smarthub" = ps: with ps; [ ]; @@ -408,6 +410,7 @@ "fan.mqtt" = ps: with ps; [ paho-mqtt ]; "fan.template" = ps: with ps; [ ]; "fan.tuya" = ps: with ps; [ ]; + "fan.wemo" = ps: with ps; [ ]; "fan.wink" = ps: with ps; [ ]; "fan.xiaomi_miio" = ps: with ps; [ construct ]; "fan.zha" = ps: with ps; [ ]; @@ -418,7 +421,7 @@ "foursquare" = ps: with ps; [ aiohttp-cors ]; "freedns" = ps: with ps; [ ]; "fritzbox" = ps: with ps; [ ]; - "frontend" = ps: with ps; [ aiohttp-cors ruamel_yaml ]; + "frontend" = ps: with ps; [ aiohttp-cors ]; "gc100" = ps: with ps; [ ]; "geo_location" = ps: with ps; [ ]; "geo_location.demo" = ps: with ps; [ ]; @@ -434,6 +437,7 @@ "google_assistant.trait" = ps: with ps; [ ]; "google_domains" = ps: with ps; [ ]; "graphite" = ps: with ps; [ ]; + "greeneye_monitor" = ps: with ps; [ ]; "group" = ps: with ps; [ ]; "habitica" = ps: with ps; [ ]; "hangouts" = ps: with ps; [ ]; @@ -478,7 +482,7 @@ "hue.const" = ps: with ps; [ ]; "hue.errors" = ps: with ps; [ ]; "hydrawise" = ps: with ps; [ ]; - "ifttt" = ps: with ps; [ aiohttp-cors ]; + "ifttt" = ps: with ps; [ aiohttp-cors pyfttt ]; "ihc" = ps: with ps; [ ]; "ihc.const" = ps: with ps; [ ]; "ihc.ihcdevice" = ps: with ps; [ ]; @@ -493,6 +497,7 @@ "image_processing.openalpr_local" = ps: with ps; [ ]; "image_processing.opencv" = ps: with ps; [ numpy ]; "image_processing.seven_segments" = ps: with ps; [ ]; + "image_processing.tensorflow" = ps: with ps; [ numpy pillow protobuf ]; "influxdb" = ps: with ps; [ influxdb ]; "input_boolean" = ps: with ps; [ ]; "input_datetime" = ps: with ps; [ ]; @@ -612,11 +617,11 @@ "lock.wink" = ps: with ps; [ ]; "lock.xiaomi_aqara" = ps: with ps; [ ]; "lock.zwave" = ps: with ps; [ ]; - "logbook" = ps: with ps; [ aiohttp-cors ruamel_yaml sqlalchemy ]; + "logbook" = ps: with ps; [ aiohttp-cors sqlalchemy ]; "logentries" = ps: with ps; [ ]; "logger" = ps: with ps; [ ]; "logi_circle" = ps: with ps; [ ]; - "lovelace" = ps: with ps; [ ruamel_yaml ]; + "lovelace" = ps: with ps; [ ]; "lutron" = ps: with ps; [ ]; "lutron_caseta" = ps: with ps; [ ]; "mailbox" = ps: with ps; [ aiohttp-cors ]; @@ -677,7 +682,7 @@ "media_player.russound_rnet" = ps: with ps; [ ]; "media_player.samsungtv" = ps: with ps; [ wakeonlan ]; "media_player.sisyphus" = ps: with ps; [ ]; - "media_player.snapcast" = ps: with ps; [ ]; + "media_player.snapcast" = ps: with ps; [ snapcast ]; "media_player.songpal" = ps: with ps; [ ]; "media_player.sonos" = ps: with ps; [ ]; "media_player.soundtouch" = ps: with ps; [ libsoundtouch ]; @@ -741,7 +746,7 @@ "notify.hangouts" = ps: with ps; [ ]; "notify.hipchat" = ps: with ps; [ ]; "notify.homematic" = ps: with ps; [ pyhomematic ]; - "notify.html5" = ps: with ps; [ aiohttp-cors ruamel_yaml ]; + "notify.html5" = ps: with ps; [ aiohttp-cors ]; "notify.instapush" = ps: with ps; [ ]; "notify.ios" = ps: with ps; [ aiohttp-cors zeroconf ]; "notify.joaoapps_join" = ps: with ps; [ ]; @@ -790,8 +795,8 @@ "openuv" = ps: with ps; [ ]; "openuv.config_flow" = ps: with ps; [ ]; "openuv.const" = ps: with ps; [ ]; - "panel_custom" = ps: with ps; [ aiohttp-cors ruamel_yaml ]; - "panel_iframe" = ps: with ps; [ aiohttp-cors ruamel_yaml ]; + "panel_custom" = ps: with ps; [ aiohttp-cors ]; + "panel_iframe" = ps: with ps; [ aiohttp-cors ]; "persistent_notification" = ps: with ps; [ ]; "pilight" = ps: with ps; [ ]; "plant" = ps: with ps; [ ]; @@ -843,6 +848,7 @@ "scene.wink" = ps: with ps; [ ]; "script" = ps: with ps; [ ]; "scsgate" = ps: with ps; [ ]; + "sense" = ps: with ps; [ ]; "sensor" = ps: with ps; [ ]; "sensor.abode" = ps: with ps; [ ]; "sensor.ads" = ps: with ps; [ ]; @@ -868,7 +874,7 @@ "sensor.bme680" = ps: with ps; [ ]; "sensor.bmw_connected_drive" = ps: with ps; [ ]; "sensor.bom" = ps: with ps; [ ]; - "sensor.broadlink" = ps: with ps; [ ]; + "sensor.broadlink" = ps: with ps; [ broadlink ]; "sensor.buienradar" = ps: with ps; [ ]; "sensor.canary" = ps: with ps; [ ]; "sensor.cert_expiry" = ps: with ps; [ ]; @@ -930,12 +936,13 @@ "sensor.gearbest" = ps: with ps; [ ]; "sensor.geizhals" = ps: with ps; [ ]; "sensor.geo_rss_events" = ps: with ps; [ ]; - "sensor.gitlab_ci" = ps: with ps; [ ]; + "sensor.gitlab_ci" = ps: with ps; [ python-gitlab ]; "sensor.gitter" = ps: with ps; [ ]; "sensor.glances" = ps: with ps; [ ]; "sensor.google_travel_time" = ps: with ps; [ ]; "sensor.google_wifi" = ps: with ps; [ ]; "sensor.gpsd" = ps: with ps; [ ]; + "sensor.greeneye_monitor" = ps: with ps; [ ]; "sensor.gtfs" = ps: with ps; [ ]; "sensor.habitica" = ps: with ps; [ ]; "sensor.haveibeenpwned" = ps: with ps; [ ]; @@ -976,6 +983,7 @@ "sensor.lyft" = ps: with ps; [ ]; "sensor.magicseaweed" = ps: with ps; [ ]; "sensor.melissa" = ps: with ps; [ ]; + "sensor.meteo_france" = ps: with ps; [ ]; "sensor.metoffice" = ps: with ps; [ ]; "sensor.mfi" = ps: with ps; [ ]; "sensor.mhz19" = ps: with ps; [ ]; @@ -1018,7 +1026,7 @@ "sensor.pilight" = ps: with ps; [ ]; "sensor.plex" = ps: with ps; [ ]; "sensor.pocketcasts" = ps: with ps; [ ]; - "sensor.pollen" = ps: with ps; [ ]; + "sensor.pollen" = ps: with ps; [ numpy ]; "sensor.postnl" = ps: with ps; [ ]; "sensor.pushbullet" = ps: with ps; [ pushbullet ]; "sensor.pvoutput" = ps: with ps; [ ]; @@ -1113,7 +1121,7 @@ "sensor.vultr" = ps: with ps; [ vultr ]; "sensor.waqi" = ps: with ps; [ ]; "sensor.waterfurnace" = ps: with ps; [ ]; - "sensor.waze_travel_time" = ps: with ps; [ ]; + "sensor.waze_travel_time" = ps: with ps; [ WazeRouteCalculator ]; "sensor.whois" = ps: with ps; [ ]; "sensor.wink" = ps: with ps; [ ]; "sensor.wirelesstag" = ps: with ps; [ ]; @@ -1166,7 +1174,7 @@ "switch.arduino" = ps: with ps; [ ]; "switch.arest" = ps: with ps; [ ]; "switch.bbb_gpio" = ps: with ps; [ ]; - "switch.broadlink" = ps: with ps; [ ]; + "switch.broadlink" = ps: with ps; [ broadlink ]; "switch.command_line" = ps: with ps; [ ]; "switch.deconz" = ps: with ps; [ ]; "switch.deluge" = ps: with ps; [ deluge-client ]; @@ -1362,7 +1370,7 @@ "zone.const" = ps: with ps; [ ]; "zone.zone" = ps: with ps; [ ]; "zoneminder" = ps: with ps; [ ]; - "zwave" = ps: with ps; [ pydispatcher python_openzwave ]; + "zwave" = ps: with ps; [ homeassistant-pyozw pydispatcher ]; "zwave.config_flow" = ps: with ps; [ ]; "zwave.const" = ps: with ps; [ ]; "zwave.discovery_schemas" = ps: with ps; [ ]; diff --git a/pkgs/servers/home-assistant/default.nix b/pkgs/servers/home-assistant/default.nix index b3d32ef2ed75919e120308efd80b03bce39ab59c..a8acf277709f99ec09feff34e69a5db0398be239 100644 --- a/pkgs/servers/home-assistant/default.nix +++ b/pkgs/servers/home-assistant/default.nix @@ -20,8 +20,8 @@ let # Override the version of some packages pinned in Home Assistant's setup.py (mkOverride "aiohttp" "3.4.4" "51afec6ffa50a9da4cdef188971a802beb1ca8e8edb40fa429e5e529db3475fa") - (mkOverride "astral" "1.6.1" - "ab0c08f2467d35fcaeb7bad15274743d3ac1ad18b5391f64a0058a9cd192d37d") + (mkOverride "astral" "1.7.1" + "88086fd2006c946567285286464b2da3294a3b0cbba4410b7008ec2458f82a07") (mkOverride "async-timeout" "3.0.1" "0c3c816a028d47f659d6ff5c745cb2acf1f966da1fe5c19c77a70282b25f4c5f") (mkOverride "attrs" "18.2.0" @@ -34,13 +34,19 @@ let "8d10113ca826a4c29d5b85b2c4e045ffa8bad74fb525ee0eceb1d38d4c70dfd6") (mkOverride "cryptography_vectors" "2.3.1" # required by cryptography==2.3.1 "bf4d9b61dce69c49e830950aa36fad194706463b0b6dfe81425b9e0bc6644d46") - (mkOverride "requests" "2.19.1" - "ec22d826a36ed72a7358ff3fe56cbd4ba69dd7a6718ffd450ff0e9df7a47ce6a") + (mkOverride "requests" "2.20.0" + "99dcfdaaeb17caf6e526f32b6a7b780461512ab3f1d992187801694cba42770c") + (mkOverride "ruamel_yaml" "0.15.72" + "97652b9e3a76958cf6684d5d963674adf345d8cc192ddd95e2a21b22cda29f40") (mkOverride "voluptuous" "0.11.5" "567a56286ef82a9d7ae0628c5842f65f516abcb496e74f3f59f1d7b28df314ef") (mkOverride "voluptuous-serialize" "2.0.0" "44be04d87aec34bd7d31ab539341fadc505205f2299031ed9be985112c21aa41") + # used by auth.mfa_modules.totp + (mkOverride "pyotp" "2.2.6" + "dd9130dd91a0340d89a0f06f887dbd76dd07fb95a8886dc4bc401239f2eebd69") + # used by check_config script # can be unpinned once https://github.com/home-assistant/home-assistant/issues/11917 is resolved (mkOverride "colorlog" "3.1.4" @@ -79,7 +85,7 @@ let extraBuildInputs = extraPackages py.pkgs; # Don't forget to run parse-requirements.py after updating - hassVersion = "0.81.1"; + hassVersion = "0.82.0"; in with py.pkgs; buildPythonApplication rec { pname = "homeassistant"; @@ -94,12 +100,12 @@ in with py.pkgs; buildPythonApplication rec { owner = "home-assistant"; repo = "home-assistant"; rev = version; - sha256 = "0z686fpcv9xy4dwcphx5npwvvw8gibcqjp6s898dbhscldg0ffmh"; + sha256 = "1vvq6frzwmbnynpq6269ykifwmvm8zj5zraslsph3jidppx2bnd4"; }; propagatedBuildInputs = [ # From setup.py - aiohttp astral async-timeout attrs bcrypt certifi jinja2 pyjwt cryptography pip pytz pyyaml requests voluptuous voluptuous-serialize + aiohttp astral async-timeout attrs bcrypt certifi jinja2 pyjwt cryptography pip pytz pyyaml requests ruamel_yaml voluptuous voluptuous-serialize # From http, frontend and recorder components and auth.mfa_modules.totp sqlalchemy aiohttp-cors hass-frontend pyotp pyqrcode ] ++ componentBuildInputs ++ extraBuildInputs; diff --git a/pkgs/servers/home-assistant/frontend.nix b/pkgs/servers/home-assistant/frontend.nix index 7bf1e68714118a82c3c9a3a706d5531d0e3e77e5..c51a6f0472f457a804959f55acfb1f68c0daebca 100644 --- a/pkgs/servers/home-assistant/frontend.nix +++ b/pkgs/servers/home-assistant/frontend.nix @@ -2,11 +2,11 @@ buildPythonPackage rec { pname = "home-assistant-frontend"; - version = "20181026.0"; + version = "20181103.3"; src = fetchPypi { inherit pname version; - sha256 = "fa877803ec7201a9b2129e96d6c19822cbcb28fa8ad5d422974bd3c872da1531"; + sha256 = "b1b598f637ffc4c37a3d35aa3b912216f0340cb43fa6c50f4617536669d19499"; }; propagatedBuildInputs = [ user-agents ]; diff --git a/pkgs/servers/home-assistant/parse-requirements.py b/pkgs/servers/home-assistant/parse-requirements.py index 95b7319269847020c6528870629f7f6eae4730f8..63374b017956a323492ddf7c83bbfd0556d545e9 100755 --- a/pkgs/servers/home-assistant/parse-requirements.py +++ b/pkgs/servers/home-assistant/parse-requirements.py @@ -1,5 +1,5 @@ #! /usr/bin/env nix-shell -#! nix-shell -i python3 -p "python3.withPackages (ps: with ps; [ aiohttp astral async-timeout attrs certifi jinja2 pyjwt cryptography pip pytz pyyaml requests voluptuous ])" +#! nix-shell -i python3 -p "python3.withPackages (ps: with ps; [ aiohttp astral async-timeout attrs certifi jinja2 pyjwt cryptography pip pytz pyyaml requests ruamel_yaml voluptuous ])" # # This script downloads Home Assistant's source tarball. # Inside the homeassistant/components directory, each component has an associated .py file, @@ -93,7 +93,7 @@ def name_to_attr_path(req): except KeyError: pass # Let's hope there's only one derivation with a matching name - assert(len(attr_paths) <= 1) + assert len(attr_paths) <= 1, "{} matches more than one derivation: {}".format(req, attr_paths) if len(attr_paths) == 1: return attr_paths.pop() else: diff --git a/pkgs/servers/http/apache-modules/tomcat-connectors/default.nix b/pkgs/servers/http/apache-modules/tomcat-connectors/default.nix index e569ae8f8706cffbd7afb627cf5423ecc95ef308..138864aec7d0352625880a9cc49e92ed9f131c97 100644 --- a/pkgs/servers/http/apache-modules/tomcat-connectors/default.nix +++ b/pkgs/servers/http/apache-modules/tomcat-connectors/default.nix @@ -1,11 +1,11 @@ { stdenv, fetchurl, apacheHttpd, jdk }: stdenv.mkDerivation rec { - name = "tomcat-connectors-1.2.41-dev-1613051"; + name = "tomcat-connectors-1.2.46"; src = fetchurl { - url = "https://people.apache.org/~rjung/mod_jk-dev/${name}-src.tar.gz"; - sha256 = "11khipjpy3y84j1pp7yyx76y64jccvyhh3klwzqxylff49vjc2fc"; + url = "mirror://apache/tomcat/tomcat-connectors/jk/${name}-src.tar.gz"; + sha256 = "1sfbcsmshjkj4wc969ngjcxhjyp4mbkjprbs111d1b0x3l7547by"; }; configureFlags = [ @@ -24,7 +24,10 @@ stdenv.mkDerivation rec { buildInputs = [ apacheHttpd jdk ]; - meta = { - platforms = stdenv.lib.platforms.unix; + meta = with stdenv.lib; { + description = "Provides web server plugins to connect web servers with Tomcat"; + homepage = https://tomcat.apache.org/download-connectors.cgi; + license = licenses.asl20; + platforms = platforms.unix; }; } diff --git a/pkgs/servers/http/nginx/generic.nix b/pkgs/servers/http/nginx/generic.nix index 643e7ed719a478c9410dc777e4e5d8fa1c4ebf59..25ff20635affcadfbe834c011a2dbe603e0c598b 100644 --- a/pkgs/servers/http/nginx/generic.nix +++ b/pkgs/servers/http/nginx/generic.nix @@ -17,9 +17,7 @@ stdenv.mkDerivation { inherit sha256; }; - - buildInputs = - [ openssl zlib pcre libxml2 libxslt gd geoip ] + buildInputs = [ openssl zlib pcre libxml2 libxslt gd geoip ] ++ concatMap (mod: mod.inputs or []) modules; configureFlags = [ diff --git a/pkgs/servers/http/nginx/modules.nix b/pkgs/servers/http/nginx/modules.nix index 15822a0387b91575c057ee9a7b861a908135a683..6b4510bfe824b68f34873c912ba31b6f0897c88e 100644 --- a/pkgs/servers/http/nginx/modules.nix +++ b/pkgs/servers/http/nginx/modules.nix @@ -131,6 +131,15 @@ }; }; + ngx_aws_auth = { + src = fetchFromGitHub { + owner = "anomalizer"; + repo = "ngx_aws_auth"; + rev = "2.1.1"; + sha256 = "10z67g40w7wpd13fwxyknkbg3p6hn61i4v8xw6lh27br29v1y6h9"; + }; + }; + opentracing = { src = let src' = fetchFromGitHub { @@ -226,7 +235,7 @@ rev = "7778f0125974befbc83751d0e1cadb2dcea57601"; sha256 = "1x5hm6r0dkm02ffny8kjd7mmq8przyd9amg2qvy5700x6lb63pbs"; }; - }; + }; statsd = { src = fetchFromGitHub { diff --git a/pkgs/servers/icecast/default.nix b/pkgs/servers/icecast/default.nix index f1bd1a4c9d860f8a23f2ee4f86381a348b6dad35..55ec611d60531f49d7dade6cbc906b2bdf5c2bb9 100644 --- a/pkgs/servers/icecast/default.nix +++ b/pkgs/servers/icecast/default.nix @@ -3,11 +3,11 @@ , libvorbis, libtheora, speex, libkate, libopus }: stdenv.mkDerivation rec { - name = "icecast-2.4.3"; + name = "icecast-2.4.4"; src = fetchurl { url = "http://downloads.xiph.org/releases/icecast/${name}.tar.gz"; - sha256 = "14n5vm2xnyn8y7kl46lnnlgv6v5fjykhc57ffdsh0qaxfs6a8p68"; + sha256 = "0i2d9rhav0x6js2qhjf5iy6j2a7f0d11ail0lfv40hb1kygrgda9"; }; buildInputs = [ libxml2 libxslt curl libvorbis libtheora speex libkate libopus ]; diff --git a/pkgs/servers/isso/default.nix b/pkgs/servers/isso/default.nix index 9e8a9dc9ec60047c05086cb8d1b2daebf28291f0..b411153398731cdf47d30d2c19b6b97910d63754 100644 --- a/pkgs/servers/isso/default.nix +++ b/pkgs/servers/isso/default.nix @@ -1,43 +1,27 @@ { stdenv, python2, fetchFromGitHub }: -let python = python2.override { - packageOverrides = self: super: { - misaka = super.misaka.overridePythonAttrs (old: rec { - version = "1.0.2"; - src = old.src.override { - inherit version; - sha256 = "05rmjxlfhghj90m1kc55lx3z8igabw5y8wmly66p3hphdy4f95v1"; - }; - propagatedBuildInputs = [ ]; - }); - html5lib = super.html5lib.overridePythonAttrs (old: rec { - version = "0.9999999"; - src = old.src.override { - inherit version; - sha256 = "2612a191a8d5842bfa057e41ba50bbb9dcb722419d2408c78cff4758d0754868"; - }; - checkInputs = with self; [ nose flake8 ]; - propagatedBuildInputs = with self; [ six ]; - checkPhase = '' - nosetests - ''; - }); - }; -}; - -in with python.pkgs; buildPythonApplication rec { +with python2.pkgs; buildPythonApplication rec { pname = "isso"; - version = "0.10.6"; + version = "0.11.1"; # no tests on PyPI src = fetchFromGitHub { owner = "posativ"; repo = pname; rev = version; - sha256 = "19x9xbwd15fikhchyl4i1wrqx589hdmh279xhnxdszrq898igywb"; + sha256 = "0545vh0sb5i4cz9c0qgch77smpwgav3rhl1dxk9ij6rx4igjk03j"; }; - propagatedBuildInputs = [ misaka werkzeug ipaddr configparser html5lib ]; + propagatedBuildInputs = [ + bleach + cffi + configparser + html5lib + ipaddr + jinja2 + misaka + werkzeug + ]; checkInputs = [ nose ]; @@ -52,3 +36,4 @@ in with python.pkgs; buildPythonApplication rec { maintainers = with maintainers; [ fgaz ]; }; } + diff --git a/pkgs/servers/jackett/default.nix b/pkgs/servers/jackett/default.nix index 100bc4709bf131a049dfc3600f71f22fb49666ed..e23c981e0c1f667a4d2dabcd5ba21b50ef5a8f13 100644 --- a/pkgs/servers/jackett/default.nix +++ b/pkgs/servers/jackett/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { name = "jackett-${version}"; - version = "0.10.365"; + version = "0.10.434"; src = fetchurl { url = "https://github.com/Jackett/Jackett/releases/download/v${version}/Jackett.Binaries.Mono.tar.gz"; - sha256 = "1wq4by10wxhcz72fappb7isw0850laf2yk5bgpx8nrjxigmv4ik0"; + sha256 = "1vnkppmv7mw2p9bjcfmfxg66g02dq0020ad4z07gbp4dvixpzsnm"; }; buildInputs = [ makeWrapper ]; diff --git a/pkgs/servers/mail/dovecot/default.nix b/pkgs/servers/mail/dovecot/default.nix index 3e628f876dd7344558aba45119598c88903b6b63..f80a01e20f88e06c843eca24cbf88a8275dfcd51 100644 --- a/pkgs/servers/mail/dovecot/default.nix +++ b/pkgs/servers/mail/dovecot/default.nix @@ -1,6 +1,7 @@ { stdenv, lib, fetchurl, perl, pkgconfig, systemd, openssl , bzip2, zlib, lz4, inotify-tools, pam, libcap , clucene_core_2, icu, openldap, libsodium, libstemmer, cyrus_sasl +, nixosTests # Auth modules , withMySQL ? false, mysql , withPgSQL ? false, postgresql @@ -33,13 +34,6 @@ stdenv.mkDerivation rec { postInstall = '' cp -r $out/$out/* $out rm -rf $out/$(echo "$out" | cut -d "/" -f2) - '' + lib.optionalString stdenv.isDarwin '' - install_name_tool -change libclucene-shared.1.dylib \ - ${clucene_core_2}/lib/libclucene-shared.1.dylib \ - $out/lib/dovecot/lib21_fts_lucene_plugin.so - install_name_tool -change libclucene-core.1.dylib \ - ${clucene_core_2}/lib/libclucene-core.1.dylib \ - $out/lib/dovecot/lib21_fts_lucene_plugin.so ''; patches = [ @@ -75,4 +69,7 @@ stdenv.mkDerivation rec { maintainers = with stdenv.lib.maintainers; [ peti rickynils fpletz ]; platforms = stdenv.lib.platforms.unix; }; + passthru.tests = { + opensmtpd-interaction = nixosTests.opensmtpd; + }; } diff --git a/pkgs/servers/mail/opensmtpd/default.nix b/pkgs/servers/mail/opensmtpd/default.nix index d558045044426cfdbfde0bf075171d2926145225..695450f1822256d97bd25878e2156d9f5be8eeec 100644 --- a/pkgs/servers/mail/opensmtpd/default.nix +++ b/pkgs/servers/mail/opensmtpd/default.nix @@ -1,17 +1,17 @@ { stdenv, lib, fetchurl, fetchpatch, autoconf, automake, libtool, bison -, libasr, libevent, zlib, libressl, db, pam +, libasr, libevent, zlib, libressl, db, pam, nixosTests }: stdenv.mkDerivation rec { name = "opensmtpd-${version}"; - version = "6.4.0p1"; + version = "6.4.0p2"; nativeBuildInputs = [ autoconf automake libtool bison ]; buildInputs = [ libasr libevent zlib libressl db pam ]; src = fetchurl { url = "https://www.opensmtpd.org/archives/${name}.tar.gz"; - sha256 = "1qxxhnlsmpfh9v4azgl0634955r085gsic1c66jdll21bd5w2mq8"; + sha256 = "1y7snhsrcdi56vaa23iwjpybhyrnnh2f6dxrfnacn7xgy5xwzbvn"; }; patches = [ @@ -62,4 +62,7 @@ stdenv.mkDerivation rec { platforms = platforms.linux; maintainers = with maintainers; [ rickynils obadz ekleog ]; }; + passthru.tests = { + basic-functionality-and-dovecot-interaction = nixosTests.opensmtpd; + }; } diff --git a/pkgs/servers/mail/opensmtpd/extras.nix b/pkgs/servers/mail/opensmtpd/extras.nix index 6b63c317d78f215b45d7466a0853e6739e9905df..1d4ad63c37d2acef99007985d2bccfe026a8fb10 100644 --- a/pkgs/servers/mail/opensmtpd/extras.nix +++ b/pkgs/servers/mail/opensmtpd/extras.nix @@ -1,13 +1,21 @@ { stdenv, fetchurl, openssl, libevent, libasr, - python2, pkgconfig, lua5, perl, mysql, postgresql, sqlite, hiredis }: + python2, pkgconfig, lua5, perl, mysql, postgresql, sqlite, hiredis, + enablePython ? true, + enableLua ? true, + enablePerl ? true, + enableMysql ? true, + enablePostgres ? true, + enableSqlite ? true, + enableRedis ? true, +}: stdenv.mkDerivation rec { name = "opensmtpd-extras-${version}"; - version = "5.7.1"; + version = "6.4.0"; src = fetchurl { url = "https://www.opensmtpd.org/archives/${name}.tar.gz"; - sha256 = "1kld4hxgz792s0cb2gl7m2n618ikzqkj88w5dhaxdrxg4x2c4vdm"; + sha256 = "09k25l7zy5ch3fk6qphni2h0rxdp8wacmfag1whi608dgimrhrnb"; }; nativeBuildInputs = [ pkgconfig ]; @@ -40,42 +48,45 @@ stdenv.mkDerivation rec { "--with-scheduler-ram" "--with-scheduler-stub" - ] ++ stdenv.lib.optional (python2 != null) [ + ] ++ stdenv.lib.optional enablePython [ "--with-python=${python2}" "--with-filter-python" "--with-queue-python" "--with-table-python" "--with-scheduler-python" - ] ++ stdenv.lib.optional (lua5 != null) [ + ] ++ stdenv.lib.optional enableLua [ "--with-lua=${pkgconfig}" "--with-filter-lua" - ] ++ stdenv.lib.optional (perl != null) [ + ] ++ stdenv.lib.optional enablePerl [ "--with-perl=${perl}" "--with-filter-perl" - ] ++ stdenv.lib.optional (mysql != null) [ + ] ++ stdenv.lib.optional enableMysql [ "--with-table-mysql" - ] ++ stdenv.lib.optional (postgresql != null) [ + ] ++ stdenv.lib.optional enablePostgres [ "--with-table-postgres" - ] ++ stdenv.lib.optional (sqlite != null) [ + ] ++ stdenv.lib.optional enableSqlite [ "--with-table-sqlite" - ] ++ stdenv.lib.optional (hiredis != null) [ + ] ++ stdenv.lib.optional enableRedis [ "--with-table-redis" ]; - NIX_CFLAGS_COMPILE = stdenv.lib.optional (hiredis != null) "-I${hiredis}/include/hiredis" ++ - stdenv.lib.optional (mysql != null) "-L${mysql.connector-c}/lib/mysql"; + NIX_CFLAGS_COMPILE = + stdenv.lib.optional enableRedis + "-I${hiredis}/include/hiredis -lhiredis" + ++ stdenv.lib.optional enableMysql + "-L${mysql.connector-c}/lib/mysql"; meta = with stdenv.lib; { homepage = https://www.opensmtpd.org/; description = "Extra plugins for the OpenSMTPD mail server"; license = licenses.isc; platforms = platforms.linux; - maintainers = with maintainers; [ gebner ]; + maintainers = with maintainers; [ gebner ekleog ]; }; } diff --git a/pkgs/servers/matrix-synapse/default.nix b/pkgs/servers/matrix-synapse/default.nix index dab58d2edd6bf4838398417023b33e7aae44f925..ba89dc7bdb798fa74f2c5cdc5da452ef96de18f4 100644 --- a/pkgs/servers/matrix-synapse/default.nix +++ b/pkgs/servers/matrix-synapse/default.nix @@ -1,59 +1,93 @@ -{ stdenv, python2Packages, fetchurl, fetchFromGitHub }: +{ lib, stdenv, python2 +, enableSystemd ? true +}: + +with python2.pkgs; + let - matrix-angular-sdk = python2Packages.buildPythonPackage rec { - name = "matrix-angular-sdk-${version}"; + matrix-angular-sdk = buildPythonPackage rec { + pname = "matrix-angular-sdk"; version = "0.6.8"; - src = fetchurl { - url = "mirror://pypi/m/matrix-angular-sdk/matrix-angular-sdk-${version}.tar.gz"; + src = fetchPypi { + inherit pname version; sha256 = "0gmx4y5kqqphnq3m7xk2vpzb0w2a4palicw7wfdr1q2schl9fhz2"; }; + + # no checks from Pypi but as this is abandonware, there will be no + # new version anyway + doCheck = false; }; - matrix-synapse-ldap3 = python2Packages.buildPythonPackage rec { + + matrix-synapse-ldap3 = buildPythonPackage rec { pname = "matrix-synapse-ldap3"; version = "0.1.3"; - src = fetchFromGitHub { - owner = "matrix-org"; - repo = "matrix-synapse-ldap3"; - rev = "v${version}"; - sha256 = "0ss7ld3bpmqm8wcs64q1kb7vxlpmwk9lsgq0mh21a9izyfc7jb2l"; + src = fetchPypi { + inherit pname version; + sha256 = "0a0d1y9yi0abdkv6chbmxr3vk36gynnqzrjhbg26q4zg06lh9kgn"; }; - propagatedBuildInputs = with python2Packages; [ service-identity ldap3 twisted ]; + propagatedBuildInputs = [ service-identity ldap3 twisted ]; - checkInputs = with python2Packages; [ ldaptor mock ]; + # ldaptor is not ready for py3 yet + doCheck = !isPy3k; + checkInputs = [ ldaptor mock ]; }; -in python2Packages.buildPythonApplication rec { - name = "matrix-synapse-${version}"; - version = "0.33.6"; - src = fetchFromGitHub { - owner = "matrix-org"; - repo = "synapse"; - rev = "v${version}"; - sha256 = "0c1dr09f1msv6xvpmdlncx7yyj6qxnpihd93lqckd115fds12g5h"; +in buildPythonApplication rec { + pname = "matrix-synapse"; + version = "0.33.8"; + + src = fetchPypi { + inherit pname version; + sha256 = "0j8knnqpkidkmpwr2i1k9cwlnwfqpzn3q6ysjvrwpa76hpfcg40l"; }; patches = [ ./matrix-synapse.patch ]; - propagatedBuildInputs = with python2Packages; [ - blist canonicaljson daemonize dateutil frozendict pillow pyasn1 - pydenticon pymacaroons-pynacl pynacl pyopenssl pysaml2 pytz requests - signedjson systemd twisted ujson unpaddedbase64 pyyaml prometheus_client - matrix-angular-sdk bleach netaddr jinja2 psycopg2 - psutil msgpack-python lxml matrix-synapse-ldap3 - phonenumbers jsonschema affinity bcrypt sortedcontainers treq - ]; + propagatedBuildInputs = [ + bcrypt + bleach + canonicaljson + daemonize + dateutil + frozendict + jinja2 + jsonschema + lxml + matrix-angular-sdk + matrix-synapse-ldap3 + msgpack-python + netaddr + phonenumbers + pillow + prometheus_client + psutil + psycopg2 + pyasn1 + pydenticon + pymacaroons-pynacl + pynacl + pyopenssl + pysaml2 + pyyaml + requests + signedjson + sortedcontainers + treq + twisted + unpaddedbase64 + ] ++ lib.optional enableSystemd systemd; - # Checks fail because of Tox. - doCheck = false; + # tests fail under py3 for now, but version 0.34.0 will use py3 by default + # https://github.com/matrix-org/synapse/issues/4036 + doCheck = true; + checkPhase = "python -m twisted.trial test"; - buildInputs = with python2Packages; [ - mock setuptoolsTrial - ]; + checkInputs = [ mock setuptoolsTrial ]; meta = with stdenv.lib; { homepage = https://matrix.org; diff --git a/pkgs/servers/memcached/default.nix b/pkgs/servers/memcached/default.nix index dc66c710a5d49b6ebe3ae3638cacbfc6612a1e3b..f35b8ff018846040bb1ea35ab531c72c8f5188c7 100644 --- a/pkgs/servers/memcached/default.nix +++ b/pkgs/servers/memcached/default.nix @@ -1,12 +1,12 @@ {stdenv, fetchurl, cyrus_sasl, libevent}: stdenv.mkDerivation rec { - version = "1.5.11"; + version = "1.5.12"; name = "memcached-${version}"; src = fetchurl { url = "https://memcached.org/files/${name}.tar.gz"; - sha256 = "0ajql8qs3w1lpw41vxkq2xabkxmmdk2nwg3i4lkclraq8pw92yk9"; + sha256 = "0aav15f0lh8k4i62aza2bdv4s8vv65j38pz2zc4v45snd3arfby0"; }; buildInputs = [cyrus_sasl libevent]; diff --git a/pkgs/servers/misc/client-ip-echo/client-ip-echo.nix b/pkgs/servers/misc/client-ip-echo/client-ip-echo.nix index 92bbc309ed3dd3ba8601b3121185ad88b17fccae..1f5c6a20843ac141b2a095ace31559b0c62fdea6 100644 --- a/pkgs/servers/misc/client-ip-echo/client-ip-echo.nix +++ b/pkgs/servers/misc/client-ip-echo/client-ip-echo.nix @@ -1,17 +1,16 @@ { mkDerivation, fetchFromGitHub, base, bytestring, network, stdenv }: mkDerivation { pname = "client-ip-echo"; - version = "0.1.0.1"; + version = "0.1.0.3"; src = fetchFromGitHub { owner = "jerith666"; repo = "client-ip-echo"; - rev = "f6e3e115a1e61a387cf79956ead36d7ac25a2901"; - sha256 = "0irxcaiwxxn4ggd2dbya1mvpnyfanx0x06whp8ccrha141cafwqp"; + rev = "8d1a79d94a962b3266c1db51200913c2295d8922"; + sha256 = "1g1s7i68n3906m3yjfygw96j64n8nh88lmf77blnz0xzrq4y3bgf"; }; isLibrary = false; isExecutable = true; executableHaskellDepends = [ base bytestring network ]; description = "accepts TCP connections and echoes the client's IP address back to it"; license = stdenv.lib.licenses.lgpl3; - broken = true; # 2018-04-10 } diff --git a/pkgs/servers/monitoring/grafana-reporter/default.nix b/pkgs/servers/monitoring/grafana-reporter/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..03ed37b8b3f521c43659de28c54335f52940ed53 --- /dev/null +++ b/pkgs/servers/monitoring/grafana-reporter/default.nix @@ -0,0 +1,32 @@ +{ stdenv, buildGoPackage, fetchFromGitHub, tetex, makeWrapper }: + +with stdenv.lib; + +buildGoPackage rec { + name = "reporter-${version}"; + version = "2.0.1"; + rev = "v${version}"; + + goPackagePath = "github.com/IzakMarais/reporter"; + + nativeBuildInputs = [ makeWrapper ]; + + src = fetchFromGitHub { + inherit rev; + owner = "IzakMarais"; + repo = "reporter"; + sha256 = "0yi7nx8ig5xgkwizddl0gdicnmcdp4qgg1fdxyq04l2y3qs176sg"; + }; + + postInstall = '' + wrapProgram $bin/bin/grafana-reporter \ + --prefix PATH : ${makeBinPath [ tetex ]} + ''; + + meta = { + description = "PDF report generator from a Grafana dashboard"; + homepage = https://github.com/IzakMarais/reporter; + license = licenses.mit; + maintainers = with maintainers; [ disassembler ]; + }; +} diff --git a/pkgs/servers/monitoring/grafana/default.nix b/pkgs/servers/monitoring/grafana/default.nix index 70112732d2734dd62225ae4479065e933fbf97d6..eaa21fcd0a5d15d13646ef446e2e3b72d3dc6bed 100644 --- a/pkgs/servers/monitoring/grafana/default.nix +++ b/pkgs/servers/monitoring/grafana/default.nix @@ -1,7 +1,7 @@ { lib, buildGoPackage, fetchurl, fetchFromGitHub, phantomjs2 }: buildGoPackage rec { - version = "5.3.2"; + version = "5.3.4"; name = "grafana-${version}"; goPackagePath = "github.com/grafana/grafana"; @@ -9,12 +9,12 @@ buildGoPackage rec { rev = "v${version}"; owner = "grafana"; repo = "grafana"; - sha256 = "1p2vapyaf11d7zri73vnq1rsgwb018pqbjzdkdgppcm5xfrrjh8y"; + sha256 = "1fhzdkd1hr7l9cy7c9r03pgaxklfgj09q21ljrahqr006gcn1wgn"; }; srcStatic = fetchurl { url = "https://s3-us-west-2.amazonaws.com/grafana-releases/release/grafana-${version}.linux-amd64.tar.gz"; - sha256 = "067rj2lrdwxda1clcg89m1cnl9sfrl2l9ia5fx2bcxq3yzhchazh"; + sha256 = "06andnnnsh68lmra9gc85rsmyx88cwlq2kwzks1d5axpy2mq5arv"; }; postPatch = '' diff --git a/pkgs/servers/monitoring/kapacitor/default.nix b/pkgs/servers/monitoring/kapacitor/default.nix index 0e21069bbb0ea6ece74a6fec5ed6b200c4227b3f..969a58aff85d9381167ce22ca7ce3cbf2f140c19 100644 --- a/pkgs/servers/monitoring/kapacitor/default.nix +++ b/pkgs/servers/monitoring/kapacitor/default.nix @@ -2,7 +2,7 @@ buildGoPackage rec { name = "kapacitor-${version}"; - version = "1.4.0"; + version = "1.5.1"; goPackagePath = "github.com/influxdata/kapacitor"; @@ -10,7 +10,7 @@ buildGoPackage rec { owner = "influxdata"; repo = "kapacitor"; rev = "v${version}"; - sha256 = "1qanf7qljzqqkyw2cdazg0ll13q8a3fs3sqydcgfbgpdmf707sj2"; + sha256 = "17f3my1zmqmcx7qqhdcq8n73l60bsxnnxqgvnw0cnf0xsa5g1yks"; }; meta = with lib; { diff --git a/pkgs/servers/monitoring/nagios/plugins/check_ssl_cert.nix b/pkgs/servers/monitoring/nagios/plugins/check_ssl_cert.nix index b8649715eb37fdbd65e8252c447e15213c0885d3..a7747d1a256efff951787ead6512933b60ef1a9c 100644 --- a/pkgs/servers/monitoring/nagios/plugins/check_ssl_cert.nix +++ b/pkgs/servers/monitoring/nagios/plugins/check_ssl_cert.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { name = "check_ssl_cert-${version}"; - version = "1.73.0"; + version = "1.76.0"; src = fetchFromGitHub { owner = "matteocorti"; repo = "check_ssl_cert"; rev = "v${version}"; - sha256 = "0ymaypsv1s5pmk8fg9d67khcjy5h7vjbg6hd1fgslp92qcw90dqa"; + sha256 = "0in52vcygscpf79938yfkf2yni49hbkvfkfhwpwyqr7qz9gd8c6j"; }; nativeBuildInputs = [ makeWrapper ]; diff --git a/pkgs/servers/monitoring/riemann-dash/Gemfile.lock b/pkgs/servers/monitoring/riemann-dash/Gemfile.lock index 1bfd80a897d369e85fc467a7d9d14d1163f799b7..00375fa4e30fe1fa7d03f1724a8b513d4b414ab6 100644 --- a/pkgs/servers/monitoring/riemann-dash/Gemfile.lock +++ b/pkgs/servers/monitoring/riemann-dash/Gemfile.lock @@ -3,7 +3,7 @@ GEM specs: erubis (2.7.0) multi_json (1.3.6) - rack (1.6.4) + rack (1.6.11) rack-protection (1.5.3) rack riemann-dash (0.2.12) @@ -27,4 +27,4 @@ DEPENDENCIES riemann-dash (= 0.2.12) BUNDLED WITH - 1.11.2 + 1.16.4 diff --git a/pkgs/servers/monitoring/riemann-dash/gemset.nix b/pkgs/servers/monitoring/riemann-dash/gemset.nix index 8a4d3ba58cb1e300b8e0f3cba47e67e7249b15d4..9298312f90e0118db501d4437f841b8fd7952ed6 100644 --- a/pkgs/servers/monitoring/riemann-dash/gemset.nix +++ b/pkgs/servers/monitoring/riemann-dash/gemset.nix @@ -16,10 +16,10 @@ rack = { source = { remotes = ["https://rubygems.org"]; - sha256 = "09bs295yq6csjnkzj7ncj50i6chfxrhmzg1pk6p0vd2lb9ac8pj5"; + sha256 = "1g9926ln2lw12lfxm4ylq1h6nl0rafl10za3xvjzc87qvnqic87f"; type = "gem"; }; - version = "1.6.4"; + version = "1.6.11"; }; rack-protection = { dependencies = ["rack"]; @@ -30,6 +30,7 @@ version = "1.5.3"; }; riemann-dash = { + dependencies = ["erubis" "multi_json" "sass" "sinatra" "webrick"]; source = { remotes = ["https://rubygems.org"]; sha256 = "1y2vh9vcl21b6k2wqgz1y8bbcrl07r43s6q2vkgp35z1b28xcszy"; @@ -46,6 +47,7 @@ version = "3.4.22"; }; sinatra = { + dependencies = ["rack" "rack-protection" "tilt"]; source = { remotes = ["https://rubygems.org"]; sha256 = "1b81kbr65mmcl9cdq2r6yc16wklyp798rxkgmm5pr9fvsj7jwmxp"; diff --git a/pkgs/servers/mqtt/mosquitto/default.nix b/pkgs/servers/mqtt/mosquitto/default.nix index 231124a42efb7a870caaeb7c31e5d6d41c8dee55..21fe01e8a3435406c93a5a941bc8ec41ab9a342a 100644 --- a/pkgs/servers/mqtt/mosquitto/default.nix +++ b/pkgs/servers/mqtt/mosquitto/default.nix @@ -25,6 +25,10 @@ stdenv.mkDerivation rec { substituteInPlace man/manpage.xsl \ --replace /usr/share/xml/docbook/stylesheet/ ${docbook_xsl}/share/xml/ + for f in {lib,lib/cpp,src}/CMakeLists.txt ; do + substituteInPlace $f --replace /sbin/ldconfig ldconfig + done + # the manpages are not generated when using cmake pushd man make @@ -39,6 +43,7 @@ stdenv.mkDerivation rec { cmakeFlags = [ "-DWITH_THREADING=ON" + "-DWITH_WEBSOCKETS=ON" ]; meta = with stdenv.lib; { diff --git a/pkgs/servers/nas/default.nix b/pkgs/servers/nas/default.nix index 1dba428e0ae985abcefe728df4f653596e60dbeb..9b8402ec0e085edb4810cb0eefb72904b914b8c0 100644 --- a/pkgs/servers/nas/default.nix +++ b/pkgs/servers/nas/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchurl, imake, bison, flex_2_6_1, gccmakedep +{ stdenv, fetchurl, imake, bison, flex, gccmakedep , xproto, libXau, libXt, libXext, libXaw, libXpm, xorgcffiles }: let @@ -12,7 +12,7 @@ in stdenv.mkDerivation { sha256 = "17dk0ckm6mp1ajc0cd6bwyi638ynw2f6bhbn7gynrs0wfmiyldng"; }; - nativeBuildInputs = [ imake bison flex_2_6_1 gccmakedep ]; + nativeBuildInputs = [ imake bison flex gccmakedep ]; buildInputs = [ xproto libXau libXt libXext libXaw libXpm ]; diff --git a/pkgs/servers/nosql/apache-jena/fuseki-binary.nix b/pkgs/servers/nosql/apache-jena/fuseki-binary.nix index d965485356c85fdf3e7d9b9cced84c0d80349b9e..63b222529a86ab0b25dad34a7bb2a43a15ab2fe3 100644 --- a/pkgs/servers/nosql/apache-jena/fuseki-binary.nix +++ b/pkgs/servers/nosql/apache-jena/fuseki-binary.nix @@ -3,10 +3,10 @@ let s = # Generated upstream information rec { baseName="apache-jena-fuseki"; - version = "3.8.0"; + version = "3.9.0"; name="${baseName}-${version}"; url="http://archive.apache.org/dist/jena/binaries/apache-jena-fuseki-${version}.tar.gz"; - sha256 = "0jca96996zl3f1qc15sfv45n09rnnv24qxv87y16dnwnyc1ism0a"; + sha256 = "1kf524j7wmvbjrr3grrhfddv3c3niddhj2f6m7hz9pqvf7nykvi4"; }; buildInputs = [ makeWrapper diff --git a/pkgs/servers/nosql/redis/default.nix b/pkgs/servers/nosql/redis/default.nix index afa0c6c0f93830981201ce9e30980d7915860e44..a7370847be15ff9ba71622ea94aa4700fa5400c6 100644 --- a/pkgs/servers/nosql/redis/default.nix +++ b/pkgs/servers/nosql/redis/default.nix @@ -1,12 +1,12 @@ { stdenv, fetchurl, lua }: stdenv.mkDerivation rec { - version = "5.0.0"; + version = "5.0.1"; name = "redis-${version}"; src = fetchurl { url = "http://download.redis.io/releases/${name}.tar.gz"; - sha256 = "194rvj3wzdil2rny93vq9g9vlqnb7gv4vnwaklybgcj00qnqpjbh"; + sha256 = "1jxbjmsxn0lgh0y3k5j57rxf2sdjj71hxhw4jcvsvycpxh77r9l2"; }; buildInputs = [ lua ]; diff --git a/pkgs/servers/plex/default.nix b/pkgs/servers/plex/default.nix index b562df681a0673ec846a861e934d783f61da2a0d..4e783f3a507e3147f8ebfb03b1c4cc127cbe1982 100644 --- a/pkgs/servers/plex/default.nix +++ b/pkgs/servers/plex/default.nix @@ -6,9 +6,9 @@ let plexPass = throw "Plex pass has been removed at upstream's request; please unset nixpkgs.config.plex.pass"; plexpkg = if enablePlexPass then plexPass else { - version = "1.13.8.5395"; - vsnHash = "10d48da0d"; - sha256 = "0lpsh87kcrqwi2qqkj1ccb86hif535yb45hhc41c0ixsfxbqk5cw"; + version = "1.13.9.5456"; + vsnHash = "ecd600442"; + sha256 = "6d1125d4e6eaa94a84f8c600230b867c2d0764644adbc959a96433b8fc210b61"; }; in stdenv.mkDerivation rec { diff --git a/pkgs/servers/radicale/default.nix b/pkgs/servers/radicale/default.nix index 1d8d97f4bde587fed14661e606d5feaaa2dece29..90e27b2907e58a29624f507eeecefaf95bbf9917 100644 --- a/pkgs/servers/radicale/default.nix +++ b/pkgs/servers/radicale/default.nix @@ -2,14 +2,14 @@ python3.pkgs.buildPythonApplication rec { pname = "Radicale"; - version = "2.1.10"; + version = "2.1.11"; # No tests in PyPI tarball src = fetchFromGitHub { owner = "Kozea"; repo = "Radicale"; rev = version; - sha256 = "0ik9gvljxhmykkzzcv9kmkp4qjwgdrl9f7hp6300flx5kmqlcjb1"; + sha256 = "1k32iy55lnyyp1r75clarhwdqvw6w8mxb5v0l5aysga07fg2mix4"; }; # We only want functional tests diff --git a/pkgs/servers/search/groonga/default.nix b/pkgs/servers/search/groonga/default.nix index 861bd7fe5ed59e44f9b2987e0dc5d0f21cf72d13..c692cee08bd69aff4e907d98a034f85c6d55e9b8 100644 --- a/pkgs/servers/search/groonga/default.nix +++ b/pkgs/servers/search/groonga/default.nix @@ -7,11 +7,11 @@ stdenv.mkDerivation rec { name = "groonga-${version}"; - version = "8.0.7"; + version = "8.0.8"; src = fetchurl { url = "https://packages.groonga.org/source/groonga/${name}.tar.gz"; - sha256 = "040q525qdlxlypgs7jzklndshdvd5shzss67lcs6xhkbs0f977cc"; + sha256 = "1fl5s0a5ncw8lj3ild2qqqxa3h4d3k98dmyki760c54kw6p6bycv"; }; buildInputs = with stdenv.lib; diff --git a/pkgs/servers/search/solr/default.nix b/pkgs/servers/search/solr/default.nix index 0326784b2ac88e93f6fef5fb13faaf83ff59eb18..04e85212f3cdb0cd2266bfffdcd7557c76a96111 100644 --- a/pkgs/servers/search/solr/default.nix +++ b/pkgs/servers/search/solr/default.nix @@ -1,20 +1,27 @@ -{ stdenv, fetchurl }: +{ stdenv, fetchurl, jre, makeWrapper }: stdenv.mkDerivation rec { name = "solr-${version}"; - version = "4.10.3"; + version = "7.5.0"; src = fetchurl { url = "mirror://apache/lucene/solr/${version}/solr-${version}.tgz"; - sha256 = "1dp269jka4q62qhv47j91wsrsnbxfn23lsx6qcycbijrlyh28w5c"; + sha256 = "1g6f58j2pzb73phj4hfri9mj7vmql72by7w3xrbq1pbnqgzxmhpa"; }; - phases = [ "unpackPhase" "installPhase" ]; + nativeBuildInputs = [ makeWrapper ]; installPhase = '' - mkdir -p $out/lib - cp dist/${name}.war $out/lib/solr.war - cp -r example/lib/ext $out/lib/ext + mkdir -p $out $out/bin + + cp -r bin/solr bin/post $out/bin/ + cp -r contrib $out/ + cp -r dist $out/ + cp -r example $out/ + cp -r server $out/ + + wrapProgram $out/bin/solr --set JAVA_HOME "${jre}" + wrapProgram $out/bin/post --set JAVA_HOME "${jre}" ''; meta = with stdenv.lib; { @@ -22,7 +29,7 @@ stdenv.mkDerivation rec { description = "Open source enterprise search platform from the Apache Lucene project"; license = licenses.asl20; platforms = platforms.all; - maintainers = [ maintainers.rickynils maintainers.domenkozar ]; + maintainers = [ maintainers.rickynils maintainers.domenkozar maintainers.aanderse ]; }; } diff --git a/pkgs/servers/smcroute/default.nix b/pkgs/servers/smcroute/default.nix index 75fff3715edcd0b08f8c4039d74f4c6796a3a142..8111991cd38a80c571c13aee5ed66c253e11e040 100644 --- a/pkgs/servers/smcroute/default.nix +++ b/pkgs/servers/smcroute/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { name = "smcroute-${version}"; - version = "2.4.2"; + version = "2.4.3"; src = fetchFromGitHub { owner = "troglobit"; repo = "smcroute"; rev = version; - sha256 = "197bi3il0c1vldw35ijx3zqyfj738nvfvr7yr4cwrbv40p3ascaq"; + sha256 = "1bdz3dic12lwl3rfczd9bxpgjbpw2g7yap2zddz6dvgkqvyjjf1h"; }; nativeBuildInputs = [ autoreconfHook pkgconfig ]; diff --git a/pkgs/servers/sql/postgresql/default.nix b/pkgs/servers/sql/postgresql/default.nix index bccd54ca4ba89974af2173f82f88d06771ff80d0..f8bf08b55b7d02f696bc55f5dcd5b8d910a3511b 100644 --- a/pkgs/servers/sql/postgresql/default.nix +++ b/pkgs/servers/sql/postgresql/default.nix @@ -89,44 +89,50 @@ let }; meta = with lib; { - homepage = https://www.postgresql.org; + homepage = https://www.postgresql.org; description = "A powerful, open source object-relational database system"; - license = licenses.postgresql; - maintainers = [ maintainers.ocharles ]; - platforms = platforms.unix; + license = licenses.postgresql; + maintainers = with maintainers; [ ocharles thoughtpolice ]; + platforms = platforms.unix; }; }); in { - postgresql93 = common { + postgresql_9_3 = common { version = "9.3.24"; psqlSchema = "9.3"; sha256 = "1a8dnv16n2rxnbwhqw7c0kjpj3xqvkpwk50kvimj4d917cxaf542"; }; - postgresql94 = common { + postgresql_9_4 = common { version = "9.4.19"; psqlSchema = "9.4"; sha256 = "12qn9h47rkn4k41gdbxkkvg0pff43k1113jmhc83f19adc1nnxq3"; }; - postgresql95 = common { + postgresql_9_5 = common { version = "9.5.14"; psqlSchema = "9.5"; sha256 = "0k8s62h6qd9p3xlx315j5irniskqsnx1nz4ir5r1yhqp07mdab1y"; }; - postgresql96 = common { + postgresql_9_6 = common { version = "9.6.10"; psqlSchema = "9.6"; sha256 = "09l4zqs74fqnazdsyln9x657mq3wsbgng9wpvq71yh26cv2sq5c6"; }; - postgresql100 = common { + postgresql_10 = common { version = "10.5"; psqlSchema = "10.0"; sha256 = "04a07jkvc5s6zgh6jr78149kcjmsxclizsqabjw44ld4j5n633kc"; }; + postgresql_11 = common { + version = "11.0"; + psqlSchema = "11.0"; + sha256 = "0szk9ssfych1wlpyqxz3z6dllg1l6m5labpii8c2r463s01vm6xz"; + }; + } diff --git a/pkgs/servers/sql/postgresql/pg_hll/default.nix b/pkgs/servers/sql/postgresql/pg_hll/default.nix index 6c453f6a40c3253e45a00671f735f5228c7f6f26..f91a8b1bf2529620027ea878bed1f758a601adf9 100644 --- a/pkgs/servers/sql/postgresql/pg_hll/default.nix +++ b/pkgs/servers/sql/postgresql/pg_hll/default.nix @@ -2,15 +2,15 @@ stdenv.mkDerivation rec { name = "pg_hll-${version}"; - version = "2.10.2-${builtins.substring 0 7 src.rev}"; + version = "2.12"; buildInputs = [ postgresql ]; src = fetchFromGitHub { owner = "citusdata"; repo = "postgresql-hll"; - rev = "9af41684d479a3097bab87d04936702c9e6baf5c"; - sha256 = "044x9v9kjhxb0idqb9f5i7c3yygxxsqliswl4kspqy9f9qcblckl"; + rev = "refs/tags/v${version}"; + sha256 = "1jdc9gjqc3dkjxv855q1p594j0awhrrymrcqnl5vw5vx2ny3bpgn"; }; installPhase = '' diff --git a/pkgs/servers/sql/postgresql/pg_repack/default.nix b/pkgs/servers/sql/postgresql/pg_repack/default.nix index a50605bd04094ae97c79e64d3b4b9d42971ae598..14f71b1e2b3b7ca477287635a867dbd3d83685cb 100644 --- a/pkgs/servers/sql/postgresql/pg_repack/default.nix +++ b/pkgs/servers/sql/postgresql/pg_repack/default.nix @@ -1,35 +1,35 @@ { stdenv, fetchFromGitHub, postgresql, openssl, zlib, readline }: stdenv.mkDerivation rec { - name = "pg_repack-${version}"; - version = "1.4.4"; + name = "pg_repack-${version}"; + version = "1.4.4"; - buildInputs = [ postgresql openssl zlib readline ]; + buildInputs = [ postgresql openssl zlib readline ]; - src = fetchFromGitHub { - owner = "reorg"; - repo = "pg_repack"; - rev = "refs/tags/ver_${version}"; - sha256 = "0ynsmsxfkcp82ccpz2nrgg8wiil8yxqigvw6425lx8v80h5lszbw"; - }; + src = fetchFromGitHub { + owner = "reorg"; + repo = "pg_repack"; + rev = "refs/tags/ver_${version}"; + sha256 = "0ynsmsxfkcp82ccpz2nrgg8wiil8yxqigvw6425lx8v80h5lszbw"; + }; - installPhase = '' - install -D bin/pg_repack -t $out/bin/ - install -D lib/pg_repack.so -t $out/lib/ - install -D lib/{pg_repack--${version}.sql,pg_repack.control} -t $out/share/extension - ''; + installPhase = '' + install -D bin/pg_repack -t $out/bin/ + install -D lib/pg_repack.so -t $out/lib/ + install -D lib/{pg_repack--${version}.sql,pg_repack.control} -t $out/share/extension + ''; - meta = with stdenv.lib; { - description = "Reorganize tables in PostgreSQL databases with minimal locks"; - longDescription = '' - pg_repack is a PostgreSQL extension which lets you remove bloat from tables and indexes, and optionally restore - the physical order of clustered indexes. Unlike CLUSTER and VACUUM FULL it works online, without holding an - exclusive lock on the processed tables during processing. pg_repack is efficient to boot, - with performance comparable to using CLUSTER directly. - ''; - license = licenses.bsd3; - maintainers = with maintainers; [ danbst ]; - inherit (postgresql.meta) platforms; - inherit (src.meta) homepage; - }; + meta = with stdenv.lib; { + description = "Reorganize tables in PostgreSQL databases with minimal locks"; + longDescription = '' + pg_repack is a PostgreSQL extension which lets you remove bloat from tables and indexes, and optionally restore + the physical order of clustered indexes. Unlike CLUSTER and VACUUM FULL it works online, without holding an + exclusive lock on the processed tables during processing. pg_repack is efficient to boot, + with performance comparable to using CLUSTER directly. + ''; + license = licenses.bsd3; + maintainers = with maintainers; [ danbst ]; + inherit (postgresql.meta) platforms; + inherit (src.meta) homepage; + }; } diff --git a/pkgs/servers/sql/postgresql/pgjwt/default.nix b/pkgs/servers/sql/postgresql/pgjwt/default.nix index 3e01d9bfe2ca0b1b50b95c5807b770a9c974a5fe..ab7ba8943a7bf5ed027786f3950c7cc07b0e18ae 100644 --- a/pkgs/servers/sql/postgresql/pgjwt/default.nix +++ b/pkgs/servers/sql/postgresql/pgjwt/default.nix @@ -1,19 +1,23 @@ -{ stdenv, fetchFromGitHub }: +{ stdenv, fetchFromGitHub, postgresql }: + stdenv.mkDerivation rec { - name = "pgjwt-${version}"; + name = "pgjwt-${version}"; version = "unstable-2017-04-24"; + src = fetchFromGitHub { - owner = "michelp"; - repo = "pgjwt"; - rev = "546a2911027b716586e241be7fd4c6f1785237cd"; + owner = "michelp"; + repo = "pgjwt"; + rev = "546a2911027b716586e241be7fd4c6f1785237cd"; sha256 = "1riz0xvwb6y02j0fljbr9hcbqb2jqs4njlivmavy9ysbcrrv1vrf"; }; - dontBuild = true; + + buildPhase = ":"; installPhase = '' mkdir -p $out/bin # current postgresql extension mechanism in nixos requires bin directory mkdir -p $out/share/extension cp pg*sql *.control $out/share/extension ''; + meta = with stdenv.lib; { description = "PostgreSQL implementation of JSON Web Tokens"; longDescription = '' diff --git a/pkgs/servers/sql/postgresql/plv8/default.nix b/pkgs/servers/sql/postgresql/plv8/default.nix index 009f65b9d81c65d4f9f717161dce9ea699964081..dae3b2fd1af14b38fd89dd86c0534349a58e9d6c 100644 --- a/pkgs/servers/sql/postgresql/plv8/default.nix +++ b/pkgs/servers/sql/postgresql/plv8/default.nix @@ -2,7 +2,7 @@ stdenv.mkDerivation rec { name = "plv8-${version}"; - version = "2.1.0"; + version = "2.3.8"; nativeBuildInputs = [ perl ]; buildInputs = [ v8 postgresql ]; @@ -11,16 +11,20 @@ stdenv.mkDerivation rec { owner = "plv8"; repo = "plv8"; rev = "v${version}"; - sha256 = "1sfpxz0zcbinn6822j12lkwgrw9kfacrs83ic968rm489rl9w241"; + sha256 = "0hrmn1zzzdf52zwldg6axv57p0f3b279l9s8lbpijcv60fqrzx16"; }; + makeFlags = [ "--makefile=Makefile.shared" ]; + preConfigure = '' - substituteInPlace Makefile --replace '-lv8_libplatform' '-lv8_libplatform -lv8_libbase' + patchShebangs ./generate_upgrade.sh ''; + buildPhase = "make -f Makefile.shared all"; + installPhase = '' mkdir -p $out/bin - install -D plv8.so -t $out/lib + install -D plv8*.so -t $out/lib install -D {plls,plcoffee,plv8}{--${version}.sql,.control} -t $out/share/extension ''; diff --git a/pkgs/servers/sql/postgresql/timescaledb/default.nix b/pkgs/servers/sql/postgresql/timescaledb/default.nix index fab515035ce69b7659be748f6a50e24abe3ae724..3c53054ba7de74d795523211582a0ac3ab2b4232 100644 --- a/pkgs/servers/sql/postgresql/timescaledb/default.nix +++ b/pkgs/servers/sql/postgresql/timescaledb/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchFromGitHub, cmake, postgresql }: +{ stdenv, fetchFromGitHub, cmake, postgresql, openssl }: # # To enable on NixOS: # config.services.postgresql = { @@ -8,16 +8,16 @@ stdenv.mkDerivation rec { name = "timescaledb-${version}"; - version = "0.11.0"; + version = "1.0.0"; nativeBuildInputs = [ cmake ]; - buildInputs = [ postgresql ]; + buildInputs = [ postgresql openssl ]; src = fetchFromGitHub { owner = "timescale"; repo = "timescaledb"; rev = "refs/tags/${version}"; - sha256 = "06xysf45r0c2sjfl6vgdbrm7pn7nxx2n0k29bm88q0ipyyp9fr0v"; + sha256 = "1359jc0dw8q3f0iipqfadzs8lvri9qa5w59ziz00x1d09ppw2q40"; }; # Fix the install phase which tries to install into the pgsql extension dir, @@ -46,6 +46,6 @@ stdenv.mkDerivation rec { homepage = https://www.timescale.com/; maintainers = with maintainers; [ volth ]; platforms = platforms.linux; - license = licenses.postgresql; + license = licenses.asl20; }; } diff --git a/pkgs/servers/sql/postgresql/topn/default.nix b/pkgs/servers/sql/postgresql/topn/default.nix index 6886c80cf50d116ad3fb26ed25e6c0295b3db2ba..dae30aadabd05b45cf86791603f5a18bcd2c97b7 100644 --- a/pkgs/servers/sql/postgresql/topn/default.nix +++ b/pkgs/servers/sql/postgresql/topn/default.nix @@ -2,7 +2,7 @@ stdenv.mkDerivation rec { name = "pg_topn-${version}"; - version = "2.0.2"; + version = "2.2.0"; nativeBuildInputs = [ protobufc ]; buildInputs = [ postgresql ]; @@ -11,7 +11,7 @@ stdenv.mkDerivation rec { owner = "citusdata"; repo = "postgresql-topn"; rev = "refs/tags/v${version}"; - sha256 = "00hc3hgnqv9xaalizbcvprb7s55sydj2qgk3rhgrdlwg2g025h62"; + sha256 = "1i5fn517mdvzfhlcj7fh4z0iniynanshcn7kzhsq19sgci0g31fr"; }; installPhase = '' diff --git a/pkgs/servers/sql/postgresql/tsearch_extras/default.nix b/pkgs/servers/sql/postgresql/tsearch_extras/default.nix index 5140ae1a228f1c0d24c88be7e8e81fcaf54dcf57..b43a9c51be0cb55fd923a436ff13798e5a072634 100644 --- a/pkgs/servers/sql/postgresql/tsearch_extras/default.nix +++ b/pkgs/servers/sql/postgresql/tsearch_extras/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { name = "tsearch-extras-${version}"; - version = "0.3"; + version = "0.4"; src = fetchFromGitHub { - owner = "zulip"; - repo = "tsearch_extras"; - rev = version; - sha256 = "0i3i99lw80jwd4xflgdqabxmn1dnm1gm7dzf1mqv2drllxcy3yix"; + owner = "zulip"; + repo = "tsearch_extras"; + rev = "84e78f00931c4ef261d98197d6b5d94fc141f742"; # no release tag? + sha256 = "18j0saqblg3jhrz38splk173xjwdf32c67ymm18m8n5y94h8d2ba"; }; nativenativeBuildInputs = [ pkgconfig ]; diff --git a/pkgs/servers/varnish/default.nix b/pkgs/servers/varnish/default.nix index 7517560a521c7938fe4167eca118bb417b124c25..e447035e32aa4cb4c724b6fa08bafabb5c91ccd4 100644 --- a/pkgs/servers/varnish/default.nix +++ b/pkgs/servers/varnish/default.nix @@ -47,8 +47,8 @@ in sha256 = "1cqlj12m426c1lak1hr1fx5zcfsjjvka3hfirz47hvy1g2fjqidq"; }; varnish6 = common { - version = "6.1.0"; - sha256 = "0zg2aqkg7a4zsjpxj0s7mphxv5f9xy279hjwln30h901k18r46qn"; + version = "6.1.1"; + sha256 = "0gf9hzzrr1lndbbqi8cwlfasi7l517cy3nbgna88i78lm247rvp0"; extraBuildInputs = [ python2.pkgs.sphinx ]; }; } diff --git a/pkgs/servers/web-apps/frab/Gemfile.lock b/pkgs/servers/web-apps/frab/Gemfile.lock index 06502ef59ad51ed55aeb3dff73c99ccac916ac45..dc18be7a33db858da7090307a9de607180aeef00 100644 --- a/pkgs/servers/web-apps/frab/Gemfile.lock +++ b/pkgs/servers/web-apps/frab/Gemfile.lock @@ -181,7 +181,7 @@ GEM pry-rails (0.3.4) pry (>= 0.9.10) puma (3.9.1) - rack (1.6.4) + rack (1.6.11) rack-test (0.6.3) rack (>= 1.0) rails (4.2.7.1) diff --git a/pkgs/servers/web-apps/frab/gemset.nix b/pkgs/servers/web-apps/frab/gemset.nix index 449fbf1a5b6b32caf410b8bb47d4ae297225bff1..c3259a2709c9ff46fd4ed328b9b13b9ec72c9d65 100644 --- a/pkgs/servers/web-apps/frab/gemset.nix +++ b/pkgs/servers/web-apps/frab/gemset.nix @@ -1,5 +1,6 @@ { actionmailer = { + dependencies = ["actionpack" "actionview" "activejob" "mail" "rails-dom-testing"]; source = { remotes = ["https://rubygems.org"]; sha256 = "0lw1pss1mrjm7x7qcg9pvxv55rz3d994yf3mwmlfg1y12fxq00n3"; @@ -8,6 +9,7 @@ version = "4.2.7.1"; }; actionpack = { + dependencies = ["actionview" "activesupport" "rack" "rack-test" "rails-dom-testing" "rails-html-sanitizer"]; source = { remotes = ["https://rubygems.org"]; sha256 = "1ray5bvlmkimjax011zsw0mz9llfkqrfm7q1avjlp4i0kpcz8zlh"; @@ -16,6 +18,7 @@ version = "4.2.7.1"; }; actionview = { + dependencies = ["activesupport" "builder" "erubis" "rails-dom-testing" "rails-html-sanitizer"]; source = { remotes = ["https://rubygems.org"]; sha256 = "11m2x5nlbqrw79fh6h7m444lrka7wwy32b0dvgqg7ilbzih43k0c"; @@ -24,6 +27,7 @@ version = "4.2.7.1"; }; activejob = { + dependencies = ["activesupport" "globalid"]; source = { remotes = ["https://rubygems.org"]; sha256 = "0ish5wd8nvmj7f6x1i22aw5ycizy5n1z1c7f3kyxmqwhw7lb0gaz"; @@ -32,6 +36,7 @@ version = "4.2.7.1"; }; activemodel = { + dependencies = ["activesupport" "builder"]; source = { remotes = ["https://rubygems.org"]; sha256 = "0acz0mbmahsc9mn41275fpfnrqwig5k09m3xhz3455kv90fn79v5"; @@ -40,6 +45,7 @@ version = "4.2.7.1"; }; activerecord = { + dependencies = ["activemodel" "activesupport" "arel"]; source = { remotes = ["https://rubygems.org"]; sha256 = "1lk8l6i9p7qfl0pg261v5yph0w0sc0vysrdzc6bm5i5rxgi68flj"; @@ -48,6 +54,7 @@ version = "4.2.7.1"; }; activeresource = { + dependencies = ["activemodel" "activesupport" "rails-observers"]; source = { remotes = ["https://rubygems.org"]; sha256 = "0nr5is20cx18s7vg8bdrdc996s2abl3h7fsi1q6mqsrzw7nrv2fa"; @@ -56,6 +63,7 @@ version = "4.1.0"; }; activesupport = { + dependencies = ["i18n" "json" "minitest" "thread_safe" "tzinfo"]; source = { remotes = ["https://rubygems.org"]; sha256 = "1gds12k7nxrcc09b727a458ndidy1nfcllj9x22jcaj7pppvq6r4"; @@ -80,6 +88,7 @@ version = "2.4.0"; }; airbrussh = { + dependencies = ["sshkit"]; source = { remotes = ["https://rubygems.org"]; sha256 = "0pv22d2kjdbsg9q45jca3f5gsylr2r1wfpn58g58xj4s4q4r95nx"; @@ -112,6 +121,7 @@ version = "3.2.2"; }; bullet = { + dependencies = ["activesupport" "uniform_notifier"]; source = { remotes = ["https://rubygems.org"]; sha256 = "06pba7bdjnazbl0yhhvlina08nkawnm76zihkaam4k7fm0yrq1k0"; @@ -136,6 +146,7 @@ version = "1.15.0"; }; capistrano = { + dependencies = ["i18n" "rake" "sshkit"]; source = { remotes = ["https://rubygems.org"]; sha256 = "0f73w6gpml0ickmwky1cn6d8392q075zy10a323f3vmyvxyhr0jb"; @@ -144,6 +155,7 @@ version = "3.4.1"; }; capistrano-bundler = { + dependencies = ["capistrano" "sshkit"]; source = { remotes = ["https://rubygems.org"]; sha256 = "1f4iikm7pn0li2lj6p53wl0d6y7svn0h76z9c6c582mmwxa9c72p"; @@ -152,6 +164,7 @@ version = "1.1.4"; }; capistrano-rails = { + dependencies = ["capistrano" "capistrano-bundler"]; source = { remotes = ["https://rubygems.org"]; sha256 = "03lzihrq72rwcqq7jiqak79wy0xbdnymn5gxj0bfgfjlg5kpgssw"; @@ -160,6 +173,7 @@ version = "1.1.8"; }; capistrano-rvm = { + dependencies = ["capistrano" "sshkit"]; source = { remotes = ["https://rubygems.org"]; sha256 = "15sy8zcal041yy5kb7fcdqnxvndgdhg3w1kvb5dk7hfjk3ypznsa"; @@ -168,6 +182,7 @@ version = "0.1.2"; }; capistrano3-puma = { + dependencies = ["capistrano" "puma"]; source = { remotes = ["https://rubygems.org"]; sha256 = "0ynz1arnr07kcl0vsaa1znhp2ywhhs4fwndnkw8sasr9bydksln8"; @@ -184,6 +199,7 @@ version = "1.3.7"; }; climate_control = { + dependencies = ["activesupport"]; source = { remotes = ["https://rubygems.org"]; sha256 = "0krknwk6b8lwv1j9kjbxib6kf5zh4pxkf3y2vcyycx5d6nci1s55"; @@ -192,6 +208,7 @@ version = "0.0.3"; }; cocaine = { + dependencies = ["climate_control"]; source = { remotes = ["https://rubygems.org"]; sha256 = "01kk5xd7lspbkdvn6nyj0y51zhvia3z6r4nalbdcqw5fbsywwi7d"; @@ -216,6 +233,7 @@ version = "1.1.1"; }; coffee-rails = { + dependencies = ["coffee-script" "railties"]; source = { remotes = ["https://rubygems.org"]; sha256 = "1mv1kaw3z4ry6cm51w8pfrbby40gqwxanrqyqr0nvs8j1bscc1gw"; @@ -224,6 +242,7 @@ version = "4.1.1"; }; coffee-script = { + dependencies = ["coffee-script-source" "execjs"]; source = { remotes = ["https://rubygems.org"]; sha256 = "0rc7scyk7mnpfxqv5yy4y5q1hx3i7q3ahplcp4bq2g5r24g2izl2"; @@ -264,6 +283,7 @@ version = "2.1.1"; }; dotenv-rails = { + dependencies = ["dotenv" "railties"]; source = { remotes = ["https://rubygems.org"]; sha256 = "17s6c0yqaz01xd5wywjscbvv0pa3grak2lhwby91j84qm6h95vxz"; @@ -280,6 +300,7 @@ version = "2.7.0"; }; exception_notification = { + dependencies = ["actionmailer" "activesupport"]; source = { remotes = ["https://rubygems.org"]; sha256 = "1vclsr0rjfy1khvqyj67lgpa0v14nb542vvjkyaswn367nnmijhw"; @@ -296,6 +317,7 @@ version = "2.7.0"; }; factory_girl = { + dependencies = ["activesupport"]; source = { remotes = ["https://rubygems.org"]; sha256 = "1xzl4z9z390fsnyxp10c9if2n46zan3n6zwwpfnwc33crv4s410i"; @@ -304,6 +326,7 @@ version = "4.7.0"; }; factory_girl_rails = { + dependencies = ["factory_girl" "railties"]; source = { remotes = ["https://rubygems.org"]; sha256 = "0hzpirb33xdqaz44i1mbcfv0icjrghhgaz747llcfsflljd4pa4r"; @@ -312,6 +335,7 @@ version = "4.7.0"; }; faker = { + dependencies = ["i18n"]; source = { remotes = ["https://rubygems.org"]; sha256 = "09amnh5d0m3q2gpb0vr9spbfa8l2nc0kl3s79y6sx7a16hrl4vvc"; @@ -328,6 +352,7 @@ version = "0.6.9"; }; globalid = { + dependencies = ["activesupport"]; source = { remotes = ["https://rubygems.org"]; sha256 = "11plkgyl3w9k4y2scc1igvpgwyz4fnmsr63h2q4j8wkb48nlnhak"; @@ -336,6 +361,7 @@ version = "0.3.7"; }; haml = { + dependencies = ["tilt"]; source = { remotes = ["https://rubygems.org"]; sha256 = "0mrzjgkygvfii66bbylj2j93na8i89998yi01fin3whwqbvx0m1p"; @@ -344,6 +370,7 @@ version = "4.0.7"; }; httparty = { + dependencies = ["multi_xml"]; source = { remotes = ["https://rubygems.org"]; sha256 = "1msa213hclsv14ijh49i1wggf9avhnj2j4xr58m9jx6fixlbggw6"; @@ -360,6 +387,7 @@ version = "0.7.0"; }; jbuilder = { + dependencies = ["activesupport" "multi_json"]; source = { remotes = ["https://rubygems.org"]; sha256 = "1jbh1296imd0arc9nl1m71yfd7kg505p8srr1ijpsqv4hhbz5qci"; @@ -376,6 +404,7 @@ version = "1.2.1"; }; jquery-rails = { + dependencies = ["rails-dom-testing" "railties" "thor"]; source = { remotes = ["https://rubygems.org"]; sha256 = "0prqyixv7j2qlq67qdr3miwcyvi27b9a82j51gbpb6vcl0ig2rik"; @@ -384,6 +413,7 @@ version = "4.2.1"; }; jquery-ui-rails = { + dependencies = ["railties"]; source = { remotes = ["https://rubygems.org"]; sha256 = "1gfygrv4bjpjd2c377lw7xzk1b77rxjyy3w6wl4bq1gkqvyrkx77"; @@ -400,6 +430,7 @@ version = "1.8.3"; }; launchy = { + dependencies = ["addressable"]; source = { remotes = ["https://rubygems.org"]; sha256 = "190lfbiy1vwxhbgn4nl4dcbzxvm049jwc158r2x7kq3g5khjrxa2"; @@ -408,6 +439,7 @@ version = "2.4.3"; }; letter_opener = { + dependencies = ["launchy"]; source = { remotes = ["https://rubygems.org"]; sha256 = "1pcrdbxvp2x5six8fqn8gf09bn9rd3jga76ds205yph5m8fsda21"; @@ -416,6 +448,7 @@ version = "1.4.1"; }; localized_language_select = { + dependencies = ["rails"]; source = { fetchSubmodules = false; rev = "85df6b97789de6e29c630808b630e56a1b76f80c"; @@ -426,6 +459,7 @@ version = "0.3.0"; }; loofah = { + dependencies = ["nokogiri"]; source = { remotes = ["https://rubygems.org"]; sha256 = "109ps521p0sr3kgc460d58b4pr1z4mqggan2jbsf0aajy9s6xis8"; @@ -434,6 +468,7 @@ version = "2.0.3"; }; mail = { + dependencies = ["mime-types"]; source = { remotes = ["https://rubygems.org"]; sha256 = "0c9vqfy0na9b5096i5i4qvrvhwamjnmajhgqi3kdsdfl8l6agmkp"; @@ -450,6 +485,7 @@ version = "0.8.2"; }; mime-types = { + dependencies = ["mime-types-data"]; source = { remotes = ["https://rubygems.org"]; sha256 = "0087z9kbnlqhci7fxh9f6il63hj1k02icq2rs0c6cppmqchr753m"; @@ -514,6 +550,7 @@ version = "0.4.4"; }; net-scp = { + dependencies = ["net-ssh"]; source = { remotes = ["https://rubygems.org"]; sha256 = "0b0jqrcsp4bbi4n4mzyf70cp2ysyp6x07j8k8cqgxnvb4i3a134j"; @@ -530,6 +567,7 @@ version = "3.2.0"; }; nokogiri = { + dependencies = ["mini_portile2" "pkg-config"]; source = { remotes = ["https://rubygems.org"]; sha256 = "11sbmpy60ynak6s3794q32lc99hs448msjy8rkp84ay7mq7zqspv"; @@ -538,6 +576,7 @@ version = "1.6.7.2"; }; paper_trail = { + dependencies = ["activerecord" "request_store"]; source = { remotes = ["https://rubygems.org"]; sha256 = "1w3y2h1w0kml2fmzx4sdcrhnbj273npwrs0cx91xdgy2qfjj6hmr"; @@ -546,6 +585,7 @@ version = "5.2.2"; }; paperclip = { + dependencies = ["activemodel" "activesupport" "cocaine" "mime-types" "mimemagic"]; source = { remotes = ["https://rubygems.org"]; sha256 = "0r8krh5xg790845wzlc2r7l0jwskw4c4wk9xh4bpprqykwaghg0r"; @@ -578,6 +618,7 @@ version = "1.1.7"; }; polyamorous = { + dependencies = ["activerecord"]; source = { remotes = ["https://rubygems.org"]; sha256 = "1501y9l81b2lwb93fkycq8dr1bi6qcdhia3qv4fddnmrdihkl3pv"; @@ -586,6 +627,7 @@ version = "1.3.1"; }; prawn = { + dependencies = ["pdf-core" "ttfunk"]; source = { remotes = ["https://rubygems.org"]; sha256 = "04pxzfmmy8a6bv3zvh1mmyy5zi4bj994kq1v6qnlq2xlhvg4cxjc"; @@ -594,6 +636,7 @@ version = "0.15.0"; }; prawn_rails = { + dependencies = ["prawn" "railties"]; source = { remotes = ["https://rubygems.org"]; sha256 = "19m1pv2rsl3rf9rni78l8137dy2sq1r2443biv19wi9nis2pvgdg"; @@ -602,6 +645,7 @@ version = "0.0.11"; }; pry = { + dependencies = ["coderay" "method_source" "slop"]; source = { remotes = ["https://rubygems.org"]; sha256 = "05xbzyin63aj2prrv8fbq2d5df2mid93m81hz5bvf2v4hnzs42ar"; @@ -610,6 +654,7 @@ version = "0.10.4"; }; pry-byebug = { + dependencies = ["byebug" "pry"]; source = { remotes = ["https://rubygems.org"]; sha256 = "0pvc94kgxd33p6iz41ghyadq8zfbjhkk07nvz2mbh3yhrc8w7gmw"; @@ -618,6 +663,7 @@ version = "3.4.0"; }; pry-rails = { + dependencies = ["pry"]; source = { remotes = ["https://rubygems.org"]; sha256 = "0a2iinvabis2xmv0z7z7jmh7bbkkngxj2qixfdg5m6qj9x8k1kx6"; @@ -636,12 +682,13 @@ rack = { source = { remotes = ["https://rubygems.org"]; - sha256 = "09bs295yq6csjnkzj7ncj50i6chfxrhmzg1pk6p0vd2lb9ac8pj5"; + sha256 = "1g9926ln2lw12lfxm4ylq1h6nl0rafl10za3xvjzc87qvnqic87f"; type = "gem"; }; - version = "1.6.4"; + version = "1.6.11"; }; rack-test = { + dependencies = ["rack"]; source = { remotes = ["https://rubygems.org"]; sha256 = "0h6x5jq24makgv2fq5qqgjlrk74dxfy62jif9blk43llw8ib2q7z"; @@ -650,6 +697,7 @@ version = "0.6.3"; }; rails = { + dependencies = ["actionmailer" "actionpack" "actionview" "activejob" "activemodel" "activerecord" "activesupport" "railties" "sprockets-rails"]; source = { remotes = ["https://rubygems.org"]; sha256 = "1avd16ir7qx23dcnz1b3cafq1lja6rq0w222bs658p9n33rbw54l"; @@ -658,6 +706,7 @@ version = "4.2.7.1"; }; rails-deprecated_sanitizer = { + dependencies = ["activesupport"]; source = { remotes = ["https://rubygems.org"]; sha256 = "0qxymchzdxww8bjsxj05kbf86hsmrjx40r41ksj0xsixr2gmhbbj"; @@ -666,6 +715,7 @@ version = "1.0.3"; }; rails-dom-testing = { + dependencies = ["activesupport" "nokogiri" "rails-deprecated_sanitizer"]; source = { remotes = ["https://rubygems.org"]; sha256 = "1v8jl6803mbqpxh4hn0szj081q1a3ap0nb8ni0qswi7z4la844v8"; @@ -674,6 +724,7 @@ version = "1.0.7"; }; rails-html-sanitizer = { + dependencies = ["loofah"]; source = { remotes = ["https://rubygems.org"]; sha256 = "138fd86kv073zqfx0xifm646w6bgw2lr8snk16lknrrfrss8xnm7"; @@ -682,6 +733,7 @@ version = "1.0.3"; }; rails-observers = { + dependencies = ["activemodel"]; source = { remotes = ["https://rubygems.org"]; sha256 = "1lsw19jzmvipvrfy2z04hi7r29dvkfc43h43vs67x6lsj9rxwwcy"; @@ -690,6 +742,7 @@ version = "0.1.2"; }; railties = { + dependencies = ["actionpack" "activesupport" "rake" "thor"]; source = { remotes = ["https://rubygems.org"]; sha256 = "04rz7cn64zzvq7lnhc9zqmaqmqkq84q25v0ym9lcw75j1cj1mrq4"; @@ -706,6 +759,7 @@ version = "11.3.0"; }; ransack = { + dependencies = ["actionpack" "activerecord" "activesupport" "i18n" "polyamorous"]; source = { remotes = ["https://rubygems.org"]; sha256 = "0cya3wygwjhj8rckckkl387bmva4nyfvqcl0qhp9hk3zv8y6wxjc"; @@ -738,6 +792,7 @@ version = "0.8.8"; }; roust = { + dependencies = ["activesupport" "httparty" "mail"]; source = { remotes = ["https://rubygems.org"]; sha256 = "1zdnwxxh34psv0iybcdnk9w4dpgpr07j3w1fvigkpccgz5vs82qk"; @@ -746,6 +801,7 @@ version = "1.8.9"; }; rqrcode = { + dependencies = ["chunky_png"]; source = { remotes = ["https://rubygems.org"]; sha256 = "0h1pnnydgs032psakvg3l779w3ghbn08ajhhhw19hpmnfhrs8k0a"; @@ -762,6 +818,7 @@ version = "3.4.22"; }; sass-rails = { + dependencies = ["railties" "sass" "sprockets" "sprockets-rails" "tilt"]; source = { remotes = ["https://rubygems.org"]; sha256 = "0iji20hb8crncz14piss1b29bfb6l89sz3ai5fny3iw39vnxkdcb"; @@ -770,6 +827,7 @@ version = "5.0.6"; }; shoulda = { + dependencies = ["shoulda-context" "shoulda-matchers"]; source = { remotes = ["https://rubygems.org"]; sha256 = "0csmf15a7mcinfq54lfa4arp0f4b2jmwva55m0p94hdf3pxnjymy"; @@ -786,6 +844,7 @@ version = "1.2.1"; }; shoulda-matchers = { + dependencies = ["activesupport"]; source = { remotes = ["https://rubygems.org"]; sha256 = "0d3ryqcsk1n9y35bx5wxnqbgw4m8b3c79isazdjnnbg8crdp72d0"; @@ -794,6 +853,7 @@ version = "2.8.0"; }; simple_form = { + dependencies = ["actionpack" "activemodel"]; source = { remotes = ["https://rubygems.org"]; sha256 = "0ii3rkkbj5cc10f5rdiny18ncdh36kijr25cah0ybbr7kigh3v3b"; @@ -810,6 +870,7 @@ version = "3.6.0"; }; sprockets = { + dependencies = ["concurrent-ruby" "rack"]; source = { remotes = ["https://rubygems.org"]; sha256 = "0jzsfiladswnzbrwqfiaj1xip68y58rwx0lpmj907vvq47k87gj1"; @@ -818,6 +879,7 @@ version = "3.7.0"; }; sprockets-rails = { + dependencies = ["actionpack" "activesupport" "sprockets"]; source = { remotes = ["https://rubygems.org"]; sha256 = "1zr9vk2vn44wcn4265hhnnnsciwlmqzqc6bnx78if1xcssxj6x44"; @@ -834,6 +896,7 @@ version = "1.3.11"; }; sshkit = { + dependencies = ["net-scp" "net-ssh"]; source = { remotes = ["https://rubygems.org"]; sha256 = "0wpqvr2dyxwp3shwh0221i1ahyg8vd2hyilmjvdi026l00gk2j4l"; @@ -842,6 +905,7 @@ version = "1.11.3"; }; sucker_punch = { + dependencies = ["concurrent-ruby"]; source = { remotes = ["https://rubygems.org"]; sha256 = "0l8b53mlzl568kdl4la8kcjjcnawmbl0q6hq9c3kkyippa5c0x55"; @@ -890,6 +954,7 @@ version = "1.1.1"; }; tzinfo = { + dependencies = ["thread_safe"]; source = { remotes = ["https://rubygems.org"]; sha256 = "1c01p3kg6xvy1cgjnzdfq45fggbwish8krd0h864jvbpybyx7cgx"; @@ -898,6 +963,7 @@ version = "1.2.2"; }; uglifier = { + dependencies = ["execjs"]; source = { remotes = ["https://rubygems.org"]; sha256 = "0f30s1631k03x4wm7xyc79g92pppzvyysa773zsaq2kcry1pmifc"; @@ -929,4 +995,4 @@ }; version = "0.9.5"; }; -} +} \ No newline at end of file diff --git a/pkgs/servers/x11/quartz-wm/default.nix b/pkgs/servers/x11/quartz-wm/default.nix index d724a81debbb703d314a5e91f5a9f5d003dea999..ccb3937ac85f1787b2716db753e1ac21a84050d3 100644 --- a/pkgs/servers/x11/quartz-wm/default.nix +++ b/pkgs/servers/x11/quartz-wm/default.nix @@ -1,4 +1,4 @@ -{ stdenv, lib, fetchurl, xorg, pixman, pkgconfig, AppKit, Xplugin, darwin }: +{ stdenv, fetchurl, xorg, pixman, pkgconfig, AppKit, Foundation, Xplugin, cf-private }: let version = "1.3.1"; in stdenv.mkDerivation { @@ -19,9 +19,11 @@ in stdenv.mkDerivation { xorg.libXext pixman pkgconfig - AppKit Xplugin darwin.apple_sdk.frameworks.Foundation + AppKit Xplugin Foundation + # Needed for CFNotificationCenterAddObserver symbols. + cf-private ]; - meta = with lib; { + meta = with stdenv.lib; { license = licenses.apsl20; platforms = platforms.darwin; maintainers = with maintainers; [ matthewbauer ]; diff --git a/pkgs/servers/x11/xorg/overrides.nix b/pkgs/servers/x11/xorg/overrides.nix index 4772ac7f7ee2d7720feb9aa11e1c9bc778d1dca2..8f4c251335a91d66b6d9dc20f63d0ca6e903c358 100644 --- a/pkgs/servers/x11/xorg/overrides.nix +++ b/pkgs/servers/x11/xorg/overrides.nix @@ -2,10 +2,12 @@ stdenv, makeWrapper, lib, fetchurl, fetchpatch, automake, autoconf, libtool, intltool, mtdev, libevdev, libinput, - python, freetype, apple_sdk, tradcpp, fontconfig, + python, freetype, tradcpp, fontconfig, libGL, spice-protocol, zlib, libGLU, dbus, libunwind, libdrm, mesa_noglu, udev, bootstrap_cmds, bison, flex, clangStdenv, autoreconfHook, - mcpp, epoxy, openssl, pkgconfig, llvm_6 }: + mcpp, epoxy, openssl, pkgconfig, llvm_6, + cf-private, ApplicationServices, Carbon, Cocoa, Xplugin +}: let inherit (stdenv) lib isDarwin; @@ -108,9 +110,9 @@ self: super: }); libAppleWM = super.libAppleWM.overrideAttrs (attrs: { - buildInputs = attrs.buildInputs ++ [ apple_sdk.frameworks.ApplicationServices ]; + buildInputs = attrs.buildInputs ++ [ ApplicationServices ]; preConfigure = '' - substituteInPlace src/Makefile.in --replace -F/System -F${apple_sdk.frameworks.ApplicationServices} + substituteInPlace src/Makefile.in --replace -F/System -F${ApplicationServices} ''; }); @@ -466,7 +468,11 @@ self: super: sha256 = "1j1i3n5xy1wawhk95kxqdc54h34kg7xp4nnramba2q8xqfr5k117"; }; nativeBuildInputs = [ pkgconfig ]; - buildInputs = [ dri2proto dri3proto renderproto libdrm openssl libX11 libXau libXaw libxcb xcbutil xcbutilwm xcbutilimage xcbutilkeysyms xcbutilrenderutil libXdmcp libXfixes libxkbfile libXmu libXpm libXrender libXres libXt ]; + buildInputs = [ dri2proto dri3proto renderproto libdrm openssl libX11 libXau libXaw libxcb xcbutil xcbutilwm xcbutilimage xcbutilkeysyms xcbutilrenderutil libXdmcp libXfixes libxkbfile libXmu libXpm libXrender libXres libXt ] + ++ stdenv.lib.optionals stdenv.isDarwin [ + # Needed for NSDefaultRunLoopMode symbols. + cf-private + ]; postPatch = stdenv.lib.optionalString stdenv.isLinux "sed '1i#include ' -i include/os.h"; meta.platforms = stdenv.lib.platforms.unix; } else throw "unsupported xorg abiCompat ${abiCompat} for ${attrs_passed.name}"; @@ -538,9 +544,7 @@ self: super: nativeBuildInputs = attrs.nativeBuildInputs ++ [ autoreconfHook self.utilmacros self.fontutil ]; buildInputs = commonBuildInputs ++ [ bootstrap_cmds automake autoconf - apple_sdk.libs.Xplugin - apple_sdk.frameworks.Carbon - apple_sdk.frameworks.Cocoa + Xplugin Carbon Cocoa ]; propagatedBuildInputs = commonPropagatedBuildInputs ++ [ libAppleWM applewmproto @@ -582,7 +586,7 @@ self: super: preConfigure = '' mkdir -p $out/Applications export NIX_CFLAGS_COMPILE="$NIX_CFLAGS_COMPILE -Wno-error" - substituteInPlace hw/xquartz/pbproxy/Makefile.in --replace -F/System -F${apple_sdk.frameworks.ApplicationServices} + substituteInPlace hw/xquartz/pbproxy/Makefile.in --replace -F/System -F${ApplicationServices} ''; postInstall = '' rm -fr $out/share/X11/xkb/compiled diff --git a/pkgs/servers/x11/xquartz/default.nix b/pkgs/servers/x11/xquartz/default.nix index 3fc7aaea9c9352f1865b12581631e5066893b225..8cb96d0ae39f413741cf91ce681d4e8577ecefc5 100644 --- a/pkgs/servers/x11/xquartz/default.nix +++ b/pkgs/servers/x11/xquartz/default.nix @@ -1,6 +1,7 @@ -{ stdenv, lib, buildEnv, makeFontsConf, gnused, writeScript, xorg, bashInteractive, xterm, makeWrapper, ruby +{ stdenv, buildEnv, makeFontsConf, gnused, writeScript, xorg, bashInteractive, xterm, makeWrapper, ruby , quartz-wm, fontconfig, xlsfonts, xfontsel , ttf_bitstream_vera, freefont_ttf, liberation_ttf +, cf-private , shell ? "${bashInteractive}/bin/bash" }: @@ -97,7 +98,11 @@ let in stdenv.mkDerivation { name = "xquartz-${stdenv.lib.getVersion xorg.xorgserver}"; - buildInputs = [ ruby makeWrapper ]; + buildInputs = [ + ruby makeWrapper + # Needed for NSDefaultRunLoopMode symbols. + cf-private + ]; unpackPhase = "sourceRoot=."; @@ -134,7 +139,7 @@ in stdenv.mkDerivation { defaultStartX="$out/bin/startx -- $out/bin/Xquartz" ruby ${./patch_plist.rb} \ - ${lib.escapeShellArg (builtins.toXML { + ${stdenv.lib.escapeShellArg (builtins.toXML { XQUARTZ_DEFAULT_CLIENT = "${xterm}/bin/xterm"; XQUARTZ_DEFAULT_SHELL = "${shell}"; XQUARTZ_DEFAULT_STARTX = "@STARTX@"; @@ -179,7 +184,7 @@ in stdenv.mkDerivation { --replace "@FONTCONFIG_FILE@" "$fontsConfPath" ''; - meta = with lib; { + meta = with stdenv.lib; { platforms = platforms.darwin; maintainers = with maintainers; [ cstrahan ]; license = licenses.mit; diff --git a/pkgs/shells/xonsh/default.nix b/pkgs/shells/xonsh/default.nix index 6522985ab8641623076cbcde86673a045af45d30..32dfd56796d64a7f1c096673418e552da8f30b57 100644 --- a/pkgs/shells/xonsh/default.nix +++ b/pkgs/shells/xonsh/default.nix @@ -1,20 +1,19 @@ -{ stdenv, fetchFromGitHub, python3Packages, glibcLocales, coreutils }: +{ stdenv, fetchFromGitHub, python3Packages, glibcLocales, coreutils, git }: python3Packages.buildPythonApplication rec { - name = "xonsh-${version}"; - version = "0.6.8"; + pname = "xonsh"; + version = "0.8.3"; + # fetch from github because the pypi package ships incomplete tests src = fetchFromGitHub { - owner = "scopatz"; - repo = "xonsh"; - rev = version; - sha256= "1a74xpww7k432b2z44388rl31nqvckn2q3fswci04f48698hzs5l"; + owner = "scopatz"; + repo = "xonsh"; + rev = "refs/tags/${version}"; + sha256 = "1qnghqswvqlwv9121r4maibmn2dvqmbr3fhsnngsj3q7plfp7yb2"; }; LC_ALL = "en_US.UTF-8"; postPatch = '' - rm xonsh/winutils.py - sed -ie "s|/bin/ls|${coreutils}/bin/ls|" tests/test_execer.py sed -ie 's|/usr/bin/env|${coreutils}/bin/env|' scripts/xon.sh @@ -22,15 +21,14 @@ python3Packages.buildPythonApplication rec { ''; checkPhase = '' - HOME=$TMPDIR XONSH_INTERACTIVE=0 \ + HOME=$TMPDIR \ pytest \ - -k 'not test_man_completion and not test_printfile and not test_sourcefile and not test_printname ' \ - tests + -k 'not test_man_completion and not test_indir and not test_xonsh_party and not test_foreign_bash_data and not test_script and not test_single_command_no_windows and not test_redirect_out_to_file and not test_sourcefile and not test_printname and not test_printfile' ''; - checkInputs = with python3Packages; [ pytest glibcLocales ]; + checkInputs = [ python3Packages.pytest glibcLocales git ]; - propagatedBuildInputs = with python3Packages; [ ply prompt_toolkit ]; + propagatedBuildInputs = with python3Packages; [ ply prompt_toolkit_2 pygments ]; meta = with stdenv.lib; { description = "A Python-ish, BASHwards-compatible shell"; diff --git a/pkgs/shells/zsh/oh-my-zsh/default.nix b/pkgs/shells/zsh/oh-my-zsh/default.nix index d4082465b19e78cc95a3571b6464e37106cae657..552b9b6d7c18886259af93709336aba6699fc800 100644 --- a/pkgs/shells/zsh/oh-my-zsh/default.nix +++ b/pkgs/shells/zsh/oh-my-zsh/default.nix @@ -4,13 +4,13 @@ { stdenv, fetchgit }: stdenv.mkDerivation rec { - version = "2018-09-14"; + version = "2018-11-02"; name = "oh-my-zsh-${version}"; src = fetchgit { url = "https://github.com/robbyrussell/oh-my-zsh"; - rev = "489be2452a6410a2c7837910c4cd3c0ed47a7481"; - sha256 = "05svfd2q4w4hnd9rsh57z7rsc50lavg3lqm3nmm6dqak1nnrkhbz"; + rev = "05b617066ba5a37ef0c533385efd6e232a387b8f"; + sha256 = "1pcb3ca5z3nywwnlhhjl4709k69lk4p0kd36l00q37j8p0vf6zr4"; }; pathsToLink = [ "/share/oh-my-zsh" ]; diff --git a/pkgs/shells/zsh/spaceship-prompt/default.nix b/pkgs/shells/zsh/spaceship-prompt/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..28b116523ac01d33a0b9a49c8360341f262555fd --- /dev/null +++ b/pkgs/shells/zsh/spaceship-prompt/default.nix @@ -0,0 +1,33 @@ +{ stdenv, fetchFromGitHub }: + +stdenv.mkDerivation rec{ + name = "spaceship-prompt-${version}"; + version = "3.7.1"; + + src = fetchFromGitHub { + owner = "denysdovhan"; + repo = "spaceship-prompt"; + sha256 = "0laihax18bs254rm2sww5wkjbmkp4m5c8aicgqpi4diz7difxk6z"; + rev = "aaa34aeab9ba0a99416788f627ec9aeffba392f0"; + }; + + installPhase = '' + install -D -m644 LICENSE.md "$out/share/licenses/spaceship-prompt/LICENSE" + install -D -m644 README.md "$out/share/doc/spaceship-prompt/README.md" + find docs -type f -exec install -D -m644 {} "$out/share/doc/spaceship-prompt/{}" \; + find lib -type f -exec install -D -m644 {} "$out/lib/spaceship-prompt/{}" \; + find scripts -type f -exec install -D -m644 {} "$out/lib/spaceship-prompt/{}" \; + find sections -type f -exec install -D -m644 {} "$out/lib/spaceship-prompt/{}" \; + install -D -m644 spaceship.zsh "$out/lib/spaceship-prompt/spaceship.zsh" + install -d "$out/share/zsh/themes/" + ln -s "$out/lib/spaceship-prompt/spaceship.zsh" "$out/share/zsh/themes/spaceship.zsh-theme" + ''; + + meta = with stdenv.lib; { + description = "Zsh prompt for Astronauts"; + homepage = https://github.com/denysdovhan/spaceship-prompt/; + license = licenses.mit; + platforms = platforms.linux; + maintainers = with maintainers; [ nyanloutre ]; + }; +} diff --git a/pkgs/shells/zsh/zsh-git-prompt/default.nix b/pkgs/shells/zsh/zsh-git-prompt/default.nix index 7318da83d176025ae55c0b373d52084399225d0b..761ad071da95a664b89966523c2a9b1f223e3c62 100644 --- a/pkgs/shells/zsh/zsh-git-prompt/default.nix +++ b/pkgs/shells/zsh/zsh-git-prompt/default.nix @@ -29,10 +29,10 @@ , python , git , lib -, ghcVersion ? "ghc802" +, haskellPackages }: -haskell.packages.${ghcVersion}.callPackage +haskellPackages.callPackage ({ mkDerivation, base, HUnit, parsec, process, QuickCheck, stdenv }: mkDerivation rec { pname = "zsh-git-prompt"; diff --git a/pkgs/stdenv/generic/check-meta.nix b/pkgs/stdenv/generic/check-meta.nix index 26cd9f8beb96b54d7633240a4ca660f16eb78f63..d09dff10b278ac1a29eb44f292894d6a863b5233 100644 --- a/pkgs/stdenv/generic/check-meta.nix +++ b/pkgs/stdenv/generic/check-meta.nix @@ -165,6 +165,17 @@ let platforms = listOf (either str lib.systems.parsedPlatform.types.system); hydraPlatforms = listOf str; broken = bool; + # TODO: refactor once something like Profpatsch's types-simple will land + # This is currently dead code due to https://github.com/NixOS/nix/issues/2532 + tests = attrsOf (mkOptionType { + name = "test"; + check = x: x == {} || ( # Accept {} for tests that are unsupported + isDerivation x && + x ? meta.timeout + ); + merge = lib.options.mergeOneOption; + }); + timeout = int; # Weirder stuff that doesn't appear in the documentation? knownVulnerabilities = listOf str; @@ -184,8 +195,6 @@ let isIbusEngine = bool; isGutenprint = bool; badPlatforms = platforms; - # Hydra build timeout - timeout = int; }; checkMetaAttr = k: v: diff --git a/pkgs/stdenv/generic/make-derivation.nix b/pkgs/stdenv/generic/make-derivation.nix index e06faed30a1eaca835d58a3c0fbf64b3b79e380a..6c0c94487dee1b46e04ab0842661a80a2644530d 100644 --- a/pkgs/stdenv/generic/make-derivation.nix +++ b/pkgs/stdenv/generic/make-derivation.nix @@ -93,7 +93,9 @@ rec { ++ depsTargetTarget ++ depsTargetTargetPropagated) == 0; runtimeSensativeIfFixedOutput = fixedOutputDrv -> !noNonNativeDeps; supportedHardeningFlags = [ "fortify" "stackprotector" "pie" "pic" "strictoverflow" "format" "relro" "bindnow" ]; - defaultHardeningFlags = lib.remove "pie" supportedHardeningFlags; + defaultHardeningFlags = if stdenv.targetPlatform.isMusl + then supportedHardeningFlags + else lib.remove "pie" supportedHardeningFlags; enabledHardeningOptions = if builtins.elem "all" hardeningDisable then [] diff --git a/pkgs/stdenv/linux/make-bootstrap-tools.nix b/pkgs/stdenv/linux/make-bootstrap-tools.nix index 59ded9d811087242b4e0322d2fd1b932f0add7c0..f4184b92bd5fae7e8cf86717bd2fc87872b4b398 100644 --- a/pkgs/stdenv/linux/make-bootstrap-tools.nix +++ b/pkgs/stdenv/linux/make-bootstrap-tools.nix @@ -19,7 +19,7 @@ in with pkgs; rec { tarMinimal = gnutar.override { acl = null; }; busyboxMinimal = busybox.override { - useMusl = !targetPlatform.isRiscV; + useMusl = !stdenv.targetPlatform.isRiscV; enableStatic = true; enableMinimal = true; extraConfig = '' @@ -44,7 +44,7 @@ in with pkgs; rec { set -x mkdir -p $out/bin $out/lib $out/libexec - '' + (if (hostPlatform.libc == "glibc") then '' + '' + (if (stdenv.hostPlatform.libc == "glibc") then '' # Copy what we need of Glibc. cp -d ${libc.out}/lib/ld*.so* $out/lib cp -d ${libc.out}/lib/libc*.so* $out/lib @@ -75,7 +75,7 @@ in with pkgs; rec { find $out/include -name .install -exec rm {} \; find $out/include -name ..install.cmd -exec rm {} \; mv $out/include $out/include-glibc - '' else if (hostPlatform.libc == "musl") then '' + '' else if (stdenv.hostPlatform.libc == "musl") then '' # Copy what we need from musl cp ${libc.out}/lib/* $out/lib cp -rL ${libc.dev}/include $out @@ -137,7 +137,7 @@ in with pkgs; rec { cp -d ${zlib.out}/lib/libz.so* $out/lib cp -d ${libelf}/lib/libelf.so* $out/lib - '' + lib.optionalString (hostPlatform != buildPlatform) '' + '' + lib.optionalString (stdenv.hostPlatform != stdenv.buildPlatform) '' # These needed for cross but not native tools because the stdenv # GCC has certain things built in statically. See # pkgs/stdenv/linux/default.nix for the details. @@ -199,21 +199,21 @@ in with pkgs; rec { bootstrapTools = runCommand "bootstrap-tools.tar.xz" {} "cp ${build}/on-server/bootstrap-tools.tar.xz $out"; }; - bootstrapTools = if (hostPlatform.libc == "glibc") then + bootstrapTools = if (stdenv.hostPlatform.libc == "glibc") then import ./bootstrap-tools { - inherit (hostPlatform) system; + inherit (stdenv.buildPlatform) system; # Used to determine where to build inherit bootstrapFiles; } - else if (hostPlatform.libc == "musl") then + else if (stdenv.hostPlatform.libc == "musl") then import ./bootstrap-tools-musl { - inherit (hostPlatform) system; + inherit (stdenv.buildPlatform) system; # Used to determine where to build inherit bootstrapFiles; } else throw "unsupported libc"; test = derivation { name = "test-bootstrap-tools"; - inherit (hostPlatform) system; + inherit (stdenv.hostPlatform) system; # We cannot "cross test" builder = bootstrapFiles.busybox; args = [ "ash" "-e" "-c" "eval \"$buildCommand\"" ]; @@ -232,12 +232,12 @@ in with pkgs; rec { grep --version gcc --version - '' + lib.optionalString (hostPlatform.libc == "glibc") '' + '' + lib.optionalString (stdenv.hostPlatform.libc == "glibc") '' ldlinux=$(echo ${bootstrapTools}/lib/ld-linux*.so.?) export CPP="cpp -idirafter ${bootstrapTools}/include-glibc -B${bootstrapTools}" export CC="gcc -idirafter ${bootstrapTools}/include-glibc -B${bootstrapTools} -Wl,-dynamic-linker,$ldlinux -Wl,-rpath,${bootstrapTools}/lib" export CXX="g++ -idirafter ${bootstrapTools}/include-glibc -B${bootstrapTools} -Wl,-dynamic-linker,$ldlinux -Wl,-rpath,${bootstrapTools}/lib" - '' + lib.optionalString (hostPlatform.libc == "musl") '' + '' + lib.optionalString (stdenv.hostPlatform.libc == "musl") '' ldmusl=$(echo ${bootstrapTools}/lib/ld-musl*.so.?) export CPP="cpp -idirafter ${bootstrapTools}/include-libc -B${bootstrapTools}" export CC="gcc -idirafter ${bootstrapTools}/include-libc -B${bootstrapTools} -Wl,-dynamic-linker,$ldmusl -Wl,-rpath,${bootstrapTools}/lib" diff --git a/pkgs/tools/X11/wpgtk/default.nix b/pkgs/tools/X11/wpgtk/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..b6ba431da9d6dbff8b6d8f07a092bafbeb4ac6f0 --- /dev/null +++ b/pkgs/tools/X11/wpgtk/default.nix @@ -0,0 +1,49 @@ +{ stdenv, python36Packages, fetchFromGitHub, pywal, feh, libxslt, imagemagick, + gobjectIntrospection, gtk3, wrapGAppsHook, gnome3 }: + +python36Packages.buildPythonApplication rec { + pname = "wpgtk"; + version = "5.7.4"; + + src = fetchFromGitHub { + owner = "deviantfero"; + repo = "wpgtk"; + rev = "${version}"; + sha256 = "0c0kmc18lbr7nk3hh44hai9z06lfsgwxnjdv02hpjwrxg40zh726"; + }; + + pythonPath = [ + python36Packages.pygobject3 + python36Packages.pillow + pywal + imagemagick + ]; + + buildInputs = [ + wrapGAppsHook + gtk3 + gobjectIntrospection + gnome3.adwaita-icon-theme + libxslt + ]; + + # The $HOME variable must be set to build the package. A "permission denied" error will occur otherwise + preBuild = '' + export HOME=$(pwd) + ''; + + meta = with stdenv.lib; { + description = "Template based wallpaper/colorscheme generator and manager"; + longDescription = '' + In short, wpgtk is a colorscheme/wallpaper manager with a template system attached which lets you create templates from any textfile and will replace keywords on it on the fly, allowing for great styling and theming possibilities. + + wpgtk uses pywal as its colorscheme generator, but builds upon it with a UI and other features, such as the abilty to mix and edit the colorschemes generated and save them with their respective wallpapers, having light and dark themes, hackable and fast GTK+ theme made specifically for wpgtk and custom keywords and values to replace in templates. + + INFO: To work properly, this tool needs "programs.dconf.enable = true" on nixos or dconf installed. A reboot may be required after installing dconf. + ''; + homepage = https://github.com/deviantfero/wpgtk; + license = licenses.gpl2; + platforms = platforms.linux; + maintainers = [ maintainers.melkor333 ]; + }; +} diff --git a/pkgs/tools/X11/xidlehook/default.nix b/pkgs/tools/X11/xidlehook/default.nix index 0c64cbefb3ed7dc2fdb7b4bebc10bb77e6ec5478..5bdab3104a3161acefa928b45c4934e160ef7d9d 100644 --- a/pkgs/tools/X11/xidlehook/default.nix +++ b/pkgs/tools/X11/xidlehook/default.nix @@ -3,7 +3,7 @@ rustPlatform.buildRustPackage rec { name = "xidlehook-${version}"; - version = "0.5.0"; + version = "0.6.0"; doCheck = false; @@ -12,7 +12,7 @@ rustPlatform.buildRustPackage rec { repo = "xidlehook"; rev = version; - sha256 = "1qrjwk91i31rww5lwgp84hc4h3b1prm60y45jm1f28g2bbv2qy19"; + sha256 = "0rmc0g5cizyzwpk4yyh7bda70x9ybaivc6iw441k6abxmzbh358g"; }; cargoBuildFlags = lib.optionals (!stdenv.isLinux) ["--no-default-features" "--features" "pulse"]; diff --git a/pkgs/tools/admin/ansible/default.nix b/pkgs/tools/admin/ansible/default.nix index 2b6877cb25f53a3119c18cc8d785436e0959cad4..c86a108fc42577f03d4b08c68a7da97c2824406e 100644 --- a/pkgs/tools/admin/ansible/default.nix +++ b/pkgs/tools/admin/ansible/default.nix @@ -53,15 +53,20 @@ in rec { }; ansible_2_5 = generic { - version = "2.5.2"; - sha256 = "1r9sq30xz3jrvx6yqssj5wmkml1f75rx1amd7g89f3ryngrq6m59"; + version = "2.5.11"; + sha256 = "07rhgkl3a2ba59rqh9pyz1p661gc389shlwa2sw1m6wwifg4lm24"; }; ansible_2_6 = generic { - version = "2.6.2"; - sha256 = "1y5gd9h641p6pphwd7j99yyqglyj23rkmid7wgzk62611754qzkl"; + version = "2.6.7"; + sha256 = "10pakw9k9wd3cy1qk3ah2253ph7c7h3qzpal4k0s5lschzgy2fh0"; }; - ansible2 = ansible_2_6; + ansible_2_7 = generic { + version = "2.7.1"; + sha256 = "0fg95x2nr3j4rwnlyd2n03h91xx9fssi34c32356vk3z6ir395g7"; + }; + + ansible2 = ansible_2_7; ansible = ansible2; } diff --git a/pkgs/tools/admin/fastlane/Gemfile.lock b/pkgs/tools/admin/fastlane/Gemfile.lock index 631d9cb9628aa63a0dafc3e98218a536200fe130..88162a3432d97a9317b1fbf0d76daee5a4ef3c90 100644 --- a/pkgs/tools/admin/fastlane/Gemfile.lock +++ b/pkgs/tools/admin/fastlane/Gemfile.lock @@ -26,7 +26,7 @@ GEM faraday_middleware (0.12.2) faraday (>= 0.7.4, < 1.0) fastimage (2.1.4) - fastlane (2.105.2) + fastlane (2.107.0) CFPropertyList (>= 2.3, < 4.0.0) addressable (>= 2.3, < 3.0.0) babosa (>= 1.0.2, < 2.0.0) @@ -71,10 +71,10 @@ GEM representable (~> 3.0) retriable (>= 2.0, < 4.0) signet (~> 0.9) - googleauth (0.6.6) + googleauth (0.6.7) faraday (~> 0.12) jwt (>= 1.4, < 3.0) - memoist (~> 0.12) + memoist (~> 0.16) multi_json (~> 1.11) os (>= 0.9, < 2.0) signet (~> 0.7) @@ -105,7 +105,7 @@ GEM rouge (2.0.7) rubyzip (1.2.2) security (0.1.3) - signet (0.10.0) + signet (0.11.0) addressable (~> 2.3) faraday (~> 0.9) jwt (>= 1.5, < 3.0) @@ -127,7 +127,7 @@ GEM unf_ext (0.0.7.5) unicode-display_width (1.4.0) word_wrap (1.0.0) - xcodeproj (1.6.0) + xcodeproj (1.7.0) CFPropertyList (>= 2.3.3, < 4.0) atomos (~> 0.1.3) claide (>= 1.0.2, < 2.0) diff --git a/pkgs/tools/admin/fastlane/gemset.nix b/pkgs/tools/admin/fastlane/gemset.nix index c2133c7c8c9c2101c76b703250d3a7e0005746be..5afad1683c99d38815bca437874e27a6de54e924 100644 --- a/pkgs/tools/admin/fastlane/gemset.nix +++ b/pkgs/tools/admin/fastlane/gemset.nix @@ -153,10 +153,10 @@ dependencies = ["CFPropertyList" "addressable" "babosa" "colored" "commander-fastlane" "dotenv" "emoji_regex" "excon" "faraday" "faraday-cookie_jar" "faraday_middleware" "fastimage" "gh_inspector" "google-api-client" "highline" "json" "mini_magick" "multi_json" "multi_xml" "multipart-post" "plist" "public_suffix" "rubyzip" "security" "simctl" "slack-notifier" "terminal-notifier" "terminal-table" "tty-screen" "tty-spinner" "word_wrap" "xcodeproj" "xcpretty" "xcpretty-travis-formatter"]; source = { remotes = ["https://rubygems.org"]; - sha256 = "1fq1zqvwim939klkx2893cbm1v4gi3a991qrj8933l3qg1y41fx2"; + sha256 = "1d3jv7ik3rivmhxzcapia2lzf9xjmjgi4yxkl60ly6pcbbvhl48w"; type = "gem"; }; - version = "2.105.2"; + version = "2.107.0"; }; gh_inspector = { source = { @@ -179,10 +179,10 @@ dependencies = ["faraday" "jwt" "memoist" "multi_json" "os" "signet"]; source = { remotes = ["https://rubygems.org"]; - sha256 = "1747p1dhpvz76i98xnjrvaj785y1232svm0nc8g9by6pz835gp2l"; + sha256 = "1yj7j1rnyamxpn5ybgdgbiw89v9bq2r0h85s2y2jzvqanvm7iflq"; type = "gem"; }; - version = "0.6.6"; + version = "0.6.7"; }; highline = { source = { @@ -367,10 +367,10 @@ dependencies = ["addressable" "faraday" "jwt" "multi_json"]; source = { remotes = ["https://rubygems.org"]; - sha256 = "14rhv3riz6ki4ix4l79b6ckq7d015673gxkxvzdcxjl1h8plpdcy"; + sha256 = "1f5d3bz5bjc4b0r2jmqd15qf07lgsqkgd25f0h46jihrf9l5fsi4"; type = "gem"; }; - version = "0.10.0"; + version = "0.11.0"; }; simctl = { dependencies = ["CFPropertyList" "naturally"]; @@ -476,10 +476,10 @@ dependencies = ["CFPropertyList" "atomos" "claide" "colored2" "nanaimo"]; source = { remotes = ["https://rubygems.org"]; - sha256 = "1f4shbzff3wsk1jq0v9bs10496qdx69k2jfpf11p4q2ik3jdnsv7"; + sha256 = "1hy2ihcqfjlsrnf8qkm51m1kk154yp0l0007f269ky8j9z5lyw3p"; type = "gem"; }; - version = "1.6.0"; + version = "1.7.0"; }; xcpretty = { dependencies = ["rouge"]; diff --git a/pkgs/tools/admin/google-cloud-sdk/default.nix b/pkgs/tools/admin/google-cloud-sdk/default.nix index 016ea957f6c7e3458e565ce4a41aea57209ae473..aa8cc12ece8596f6f7a22b66a54c443e9e400449 100644 --- a/pkgs/tools/admin/google-cloud-sdk/default.nix +++ b/pkgs/tools/admin/google-cloud-sdk/default.nix @@ -19,18 +19,18 @@ let sources = name: system: { x86_64-darwin = { url = "${baseUrl}/${name}-darwin-x86_64.tar.gz"; - sha256 = "1d5z575vw07jk7528bsqgdd875b3zwayrdnidvxpd2n8j4bip654"; + sha256 = "03ymvfhk8azyvdm6j4pbqx2fsh178kw81yqwkycbhmm6mnyc8yv1"; }; x86_64-linux = { url = "${baseUrl}/${name}-linux-x86_64.tar.gz"; - sha256 = "0ljslvp68ml5mglrl7kakgkqskbzglf3i5jv5d7jld28d0kbzj2c"; + sha256 = "1pw4w3v81mp8alm6vxq10242xxwv8rfs59bjxrmy0pfkjgsr4x4v"; }; }.${system}; in stdenv.mkDerivation rec { name = "google-cloud-sdk-${version}"; - version = "215.0.0"; + version = "222.0.0"; src = fetchurl (sources name stdenv.hostPlatform.system); diff --git a/pkgs/tools/admin/nomachine-client/default.nix b/pkgs/tools/admin/nomachine-client/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..be616c1bf9e0f4b7f3463dd2aecb51431c796d92 --- /dev/null +++ b/pkgs/tools/admin/nomachine-client/default.nix @@ -0,0 +1,83 @@ +{ stdenv, lib, file, fetchurl, makeWrapper, autoPatchelfHook, jsoncpp }: +let + versionMajor = "6.3"; + versionMinor = "6_1"; +in + stdenv.mkDerivation rec { + name = "nomachine-client-${version}"; + version = "${versionMajor}.${versionMinor}"; + + src = + if stdenv.hostPlatform.system == "x86_64-linux" then + fetchurl { + url = "https://download.nomachine.com/download/${versionMajor}/Linux/nomachine_${version}_x86_64.tar.gz"; + sha256 = "1035j2z2rqmdfb8cfm1pakd05c575640604b8lkljmilpky9mw5d"; + } + else if stdenv.hostPlatform.system == "i686-linux" then + fetchurl { + url = "https://download.nomachine.com/download/${versionMajor}/Linux/nomachine_${version}_i686.tar.gz"; + sha256 = "07j9f6mlq9m01ch8ik5dybi283vrp5dlv156jr5n7n2chzk34kf3"; + } + else + throw "NoMachine client is not supported on ${stdenv.hostPlatform.system}"; + + postUnpack = '' + mv $(find . -type f -name nxclient.tar.gz) . + mv $(find . -type f -name nxplayer.tar.gz) . + rm -r NX/ + tar xf nxclient.tar.gz + tar xf nxplayer.tar.gz + rm $(find . -maxdepth 1 -type f) + ''; + + nativeBuildInputs = [ file makeWrapper autoPatchelfHook ]; + buildInputs = [ jsoncpp ]; + + installPhase = '' + rm bin/nxplayer bin/nxclient + + mkdir -p $out/NX + cp -r bin lib share $out/NX/ + + ln -s $out/NX/bin $out/bin + + for i in share/icons/*; do + if [[ -d "$i" ]]; then + mkdir -p "$out/share/icons/hicolor/$(basename $i)/apps" + cp "$i"/* "$out/share/icons/hicolor/$(basename $i)/apps/" + fi + done + + mkdir $out/share/applications + cp share/applnk/player/xdg/*.desktop $out/share/applications/ + cp share/applnk/client/xdg-mime/*.desktop $out/share/applications/ + + mkdir -p $out/share/mime/packages + cp share/applnk/client/xdg-mime/*.xml $out/share/mime/packages/ + + for i in $out/share/applications/*.desktop; do + substituteInPlace "$i" --replace /usr/NX/bin $out/bin + done + ''; + + postFixup = '' + makeWrapper $out/bin/nxplayer.bin $out/bin/nxplayer --set NX_SYSTEM $out/NX + makeWrapper $out/bin/nxclient.bin $out/bin/nxclient --set NX_SYSTEM $out/NX + ''; + + dontBuild = true; + dontStrip = true; + + meta = with stdenv.lib; { + description = "NoMachine remote desktop client (nxplayer)"; + homepage = https://www.nomachine.com/; + license = { + fullName = "NoMachine 6 End-User License Agreement"; + url = https://www.nomachine.com/licensing-6; + free = false; + }; + maintainers = with maintainers; [ talyz ]; + platforms = [ "x86_64-linux" "i686-linux" ]; + }; + } + diff --git a/pkgs/tools/admin/oxidized/Gemfile.lock b/pkgs/tools/admin/oxidized/Gemfile.lock index 1570adbcf0897b45bdbb42b344bfa29ad9506717..e4bdf5ccf394179637b7b10169951b3241fcb32f 100644 --- a/pkgs/tools/admin/oxidized/Gemfile.lock +++ b/pkgs/tools/admin/oxidized/Gemfile.lock @@ -29,7 +29,7 @@ GEM sinatra (~> 1.4, >= 1.4.6) sinatra-contrib (~> 1.4, >= 1.4.6) puma (3.11.3) - rack (1.6.9) + rack (1.6.11) rack-protection (1.5.5) rack rack-test (1.0.0) @@ -66,4 +66,4 @@ DEPENDENCIES oxidized-web BUNDLED WITH - 1.14.6 + 1.16.4 diff --git a/pkgs/tools/admin/oxidized/gemset.nix b/pkgs/tools/admin/oxidized/gemset.nix index f472b14e7967a80ab9a76b2c2c9b2cb5657c4c2e..5a8b2ecefdcb1191fbcf5eed6571334ce023cec8 100644 --- a/pkgs/tools/admin/oxidized/gemset.nix +++ b/pkgs/tools/admin/oxidized/gemset.nix @@ -103,10 +103,10 @@ rack = { source = { remotes = ["https://rubygems.org"]; - sha256 = "03w1ri5l91q800f1bdcdl5rbagy7s4kml136b42s2lmxmznxhr07"; + sha256 = "1g9926ln2lw12lfxm4ylq1h6nl0rafl10za3xvjzc87qvnqic87f"; type = "gem"; }; - version = "1.6.9"; + version = "1.6.11"; }; rack-protection = { dependencies = ["rack"]; @@ -203,4 +203,4 @@ }; version = "2.0.8"; }; -} +} \ No newline at end of file diff --git a/pkgs/tools/archivers/cabextract/default.nix b/pkgs/tools/archivers/cabextract/default.nix index 238ee36460719ce076ecda15291c05393809ebb5..edc70e6c601b40b5b6a6f2a7cd88f853fde3cfa9 100644 --- a/pkgs/tools/archivers/cabextract/default.nix +++ b/pkgs/tools/archivers/cabextract/default.nix @@ -1,11 +1,11 @@ { stdenv, fetchurl }: stdenv.mkDerivation rec { - name = "cabextract-1.7"; + name = "cabextract-1.9"; src = fetchurl { url = "https://www.cabextract.org.uk/${name}.tar.gz"; - sha256 = "1g86wmb8lkjiv2jarfz979ngbgg7d3si8x5il4g801604v406wi9"; + sha256 = "1hf4zhjxfdgq9x172r5zfdnafma9q0zf7372syn8hcn7hcypkg0v"; }; meta = with stdenv.lib; { diff --git a/pkgs/tools/archivers/unshield/default.nix b/pkgs/tools/archivers/unshield/default.nix index 0edb302b49c37770dcaa65f691e59e914b230290..3febb557bf8b1992748fadabd817a5893bdce22d 100644 --- a/pkgs/tools/archivers/unshield/default.nix +++ b/pkgs/tools/archivers/unshield/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { name = "unshield-${version}"; - version = "1.4.2"; + version = "1.4.3"; src = fetchFromGitHub { owner = "twogood"; repo = "unshield"; rev = version; - sha256 = "07lmh8vmrbqy4kd6zl5yc1ar3bg33w5cymlzwfijy6arg77hjgq9"; + sha256 = "19wn22vszhci8dfcixx5rliz7phx3lv5ablvhjlclvj75k2vsdqd"; }; diff --git a/pkgs/tools/audio/abcmidi/default.nix b/pkgs/tools/audio/abcmidi/default.nix index 2d54c182349ca85670e2e4838ad70346f2ea25aa..1a215d4ca83bfdde5c125f7a331001ef67f49037 100644 --- a/pkgs/tools/audio/abcmidi/default.nix +++ b/pkgs/tools/audio/abcmidi/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { name = "abcMIDI-${version}"; - version = "2018.06.23"; + version = "2018.10.25"; src = fetchzip { url = "https://ifdo.ca/~seymour/runabc/${name}.zip"; - sha256 = "0487dlw9v4ayb929w8bk71fs4nbcs1liyk59g6sfr4yn6dx2sl2d"; + sha256 = "0q7yrds1hpis1821mdsz31c2cvn7hs73a10fi1mrk1v4hqql8vv3"; }; # There is also a file called "makefile" which seems to be preferred by the standard build phase diff --git a/pkgs/tools/backup/bacula/default.nix b/pkgs/tools/backup/bacula/default.nix index 374122814c50dfb87648a1f01a7a994a9ecb074a..fd8b1e6c8281d487e97f79a85e9b98173a5a52cc 100644 --- a/pkgs/tools/backup/bacula/default.nix +++ b/pkgs/tools/backup/bacula/default.nix @@ -1,20 +1,28 @@ { stdenv, fetchurl, sqlite, postgresql, zlib, acl, ncurses, openssl, readline }: stdenv.mkDerivation rec { - name = "bacula-5.2.13"; + name = "bacula-9.2.1"; src = fetchurl { url = "mirror://sourceforge/bacula/${name}.tar.gz"; - sha256 = "1n3sc0kd7r0afpyi708y3md0a24rbldnfcdz0syqj600pxcd9gm4"; + sha256 = "1mv6axdlv246yww9g2ra76hir1km36cv8lk2gal8kv71i64vafmf"; }; buildInputs = [ postgresql sqlite zlib ncurses openssl readline ] # acl relies on attr, which I can't get to build on darwin ++ stdenv.lib.optional (!stdenv.isDarwin) acl; - configureFlags = [ + configureFlags = [ "--with-sqlite3=${sqlite.dev}" "--with-postgresql=${postgresql}" + "--with-logdir=/var/log/bacula" + "--with-working-dir=/var/lib/bacula" + "--mandir=\${out}/share/man" + ]; + + installFlags = [ + "logdir=\${out}/logdir" + "working_dir=\${out}/workdir" ]; postInstall = '' @@ -26,7 +34,7 @@ stdenv.mkDerivation rec { description = "Enterprise ready, Network Backup Tool"; homepage = http://bacula.org/; license = licenses.gpl2; - maintainers = with maintainers; [ domenkozar lovek323 ]; + maintainers = with maintainers; [ domenkozar lovek323 eleanor ]; platforms = platforms.all; }; } diff --git a/pkgs/tools/backup/bup/default.nix b/pkgs/tools/backup/bup/default.nix index f24e89fcc840d6dea363876198c7046001039844..bf10f556b6bbee2e8c1d95be6e27f1179eb101fd 100644 --- a/pkgs/tools/backup/bup/default.nix +++ b/pkgs/tools/backup/bup/default.nix @@ -5,7 +5,7 @@ assert par2Support -> par2cmdline != null; -let version = "0.29.1"; in +let version = "0.29.2"; in with stdenv.lib; @@ -16,7 +16,7 @@ stdenv.mkDerivation rec { repo = "bup"; owner = "bup"; rev = version; - sha256 = "0wdr399jf64zzzsdvldhrwvnh5xpbghjvslr1j2cwr5y4i36znxf"; + sha256 = "17lpbyhf43gcln5s43m2zzgichcx7jq6ragcawfklw6svg1vnj89"; }; buildInputs = [ diff --git a/pkgs/tools/backup/duplicity/default.nix b/pkgs/tools/backup/duplicity/default.nix index 9fbe05c725ef35f9d76f233af9289e6eb3dba4ba..cbe02a0593e5c73beb95c15d491664147e80dc28 100644 --- a/pkgs/tools/backup/duplicity/default.nix +++ b/pkgs/tools/backup/duplicity/default.nix @@ -2,11 +2,11 @@ python2Packages.buildPythonApplication rec { name = "duplicity-${version}"; - version = "0.7.18.1"; + version = "0.7.18.2"; src = fetchurl { url = "http://code.launchpad.net/duplicity/${stdenv.lib.versions.majorMinor version}-series/${version}/+download/${name}.tar.gz"; - sha256 = "17c0203y5qz9w8iyhs26l44qf6a1vp26b5ykz1ypdr2kv6g02df9"; + sha256 = "0j37dgyji36hvb5dbzlmh5rj83jwhni02yq16g6rd3hj8f7qhdn2"; }; buildInputs = [ librsync makeWrapper python2Packages.wrapPython ]; diff --git a/pkgs/tools/backup/easysnap/default.nix b/pkgs/tools/backup/easysnap/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..a8c726c9e161e0c2ea37c0674d584343b1a2328c --- /dev/null +++ b/pkgs/tools/backup/easysnap/default.nix @@ -0,0 +1,31 @@ +{stdenv, fetchFromGitHub, zfs }: + +stdenv.mkDerivation rec { + name = "easysnap-${version}"; + version = "unstable-2018-10-28"; + + src = fetchFromGitHub { + owner = "sjau"; + repo = "easysnap"; + rev = "aa2768762da7730aa3eb90fdc2190a8359976edc"; + sha256 = "0csn7capsmlkin4cf1fgl766gvszvqfllqkiyz0g9bvbapxv7nba"; + }; + + installPhase = '' + mkdir -p $out/bin + cp -n easysnap* $out/bin/ + + for i in $out/bin/*; do + substituteInPlace $i \ + --replace zfs ${zfs}/bin/zfs + done + ''; + + meta = with stdenv.lib; { + homepage = https://github.com/sjau/easysnap; + description = "Customizable ZFS Snapshotting tool with zfs send/recv pulling"; + license = licenses.gpl3; + maintainers = with maintainers; [ sjau ]; + }; + +} diff --git a/pkgs/tools/filesystems/android-file-transfer/default.nix b/pkgs/tools/filesystems/android-file-transfer/default.nix index 336dc785bbfd3e3462efc8a80762afa194b2a4fe..c3a0c46d5ecaf2bcac0c9d28a823eb43d93e07e2 100644 --- a/pkgs/tools/filesystems/android-file-transfer/default.nix +++ b/pkgs/tools/filesystems/android-file-transfer/default.nix @@ -2,12 +2,12 @@ stdenv.mkDerivation rec { name = "android-file-transfer-${version}"; - version = "3.5"; + version = "3.6"; src = fetchFromGitHub { owner = "whoozle"; repo = "android-file-transfer-linux"; rev = "v${version}"; - sha256 = "036hca41ikgnw4maykjdp53l31rm01mgamy9y56i5qqh84cwmls2"; + sha256 = "0gaj1shmd62ks4cjdcmiqczlr93v8ivjcg0l6s8z73cz9pf8dxmz"; }; buildInputs = [ cmake fuse readline pkgconfig qtbase ]; buildPhase = '' diff --git a/pkgs/tools/filesystems/btrfs-progs/default.nix b/pkgs/tools/filesystems/btrfs-progs/default.nix index 42f27e69f38ed6a868880dbff6bb38fb743fab37..252f25ad8fa88ea8ee3b5b98187acfddfae4ca10 100644 --- a/pkgs/tools/filesystems/btrfs-progs/default.nix +++ b/pkgs/tools/filesystems/btrfs-progs/default.nix @@ -4,11 +4,11 @@ stdenv.mkDerivation rec { name = "btrfs-progs-${version}"; - version = "4.17.1"; + version = "4.19"; src = fetchurl { url = "mirror://kernel/linux/kernel/people/kdave/btrfs-progs/btrfs-progs-v${version}.tar.xz"; - sha256 = "0x6d53fbrcmzvhv461575fzsv3373427p4srz646w2wcagqk82xz"; + sha256 = "0jd3bsg3117ysr82n03w33sqw1g9z1ciixcxrwgp90yghvjzp4fm"; }; nativeBuildInputs = [ diff --git a/pkgs/tools/filesystems/disorderfs/default.nix b/pkgs/tools/filesystems/disorderfs/default.nix index 138f727c3d3059e197d8d010f44cee7eb7138272..07a9015fa28eecd45f9911a4ca9590dff3a9f10b 100644 --- a/pkgs/tools/filesystems/disorderfs/default.nix +++ b/pkgs/tools/filesystems/disorderfs/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { name = "disorderfs-${version}"; - version = "0.5.4"; + version = "0.5.5"; src = fetchurl { url = "http://http.debian.net/debian/pool/main/d/disorderfs/disorderfs_${version}.orig.tar.gz"; - sha256 = "0rp789qll5nmzw0jffx36ppcl9flr6hvdz84ah080mvghqkfdq8y"; + sha256 = "1y1i7k5mx2pxr9bpijnsjyyw8qd7ak1h48gf6a6ca3dhna9ws6i1"; }; nativeBuildInputs = [ pkgconfig asciidoc ]; diff --git a/pkgs/tools/filesystems/glusterfs/default.nix b/pkgs/tools/filesystems/glusterfs/default.nix index f4aa9a52fce311e663ebf6053ad6eba83431bde0..e915cc1c132ac76441014dd77bd7677f31d7a811 100644 --- a/pkgs/tools/filesystems/glusterfs/default.nix +++ b/pkgs/tools/filesystems/glusterfs/default.nix @@ -15,10 +15,10 @@ let # The command # find /nix/store/...-glusterfs-.../ -name '*.py' -executable # can help with finding new Python scripts. - version = "3.12.12"; + version = "4.0.0"; name="${baseName}-${version}"; url="https://github.com/gluster/glusterfs/archive/v${version}.tar.gz"; - sha256 = "1q6rcf9y98w3kvgwdlbhl65phkdl0mfil6y7i3gnpf3d21gfb6nw"; + sha256 = "0af3fwiixddds6gdwhkyq3l214mmjl2wpjc2qayp5rpz79lnclq3"; }; buildInputs = [ fuse bison flex_2_5_35 openssl ncurses readline @@ -70,10 +70,13 @@ rec { ''; patches = [ + # Remove when https://bugzilla.redhat.com/show_bug.cgi?id=1450546 is fixed ./glusterfs-use-PATH-instead-of-hardcodes.patch + # Remove when https://bugzilla.redhat.com/show_bug.cgi?id=1450593 is fixed ./glusterfs-python-remove-find_library.patch # Remove when https://bugzilla.redhat.com/show_bug.cgi?id=1489610 is fixed ./glusterfs-fix-bug-1489610-glusterfind-var-data-under-prefix.patch + # Remove when https://bugzilla.redhat.com/show_bug.cgi?id=1559130 is fixed ./glusterfs-glusterfind-log-remote-node_cmd-error.patch ]; diff --git a/pkgs/tools/filesystems/glusterfs/glusterfs-python-remove-find_library.patch b/pkgs/tools/filesystems/glusterfs/glusterfs-python-remove-find_library.patch index 6dd1baad5dff001f5fd4401d8e8ef6615b08ad24..4757f2fce771930d8f59f7955683390288ac61e3 100644 --- a/pkgs/tools/filesystems/glusterfs/glusterfs-python-remove-find_library.patch +++ b/pkgs/tools/filesystems/glusterfs/glusterfs-python-remove-find_library.patch @@ -1,21 +1,23 @@ -From d321df349d10f038f0c89b9c11f8059572264f1b Mon Sep 17 00:00:00 2001 +From e6293e367f56833457291e32a4df7b21a52365a7 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Niklas=20Hamb=C3=BCchen?= Date: Sat, 13 May 2017 18:54:36 +0200 Subject: [PATCH] python: Remove all uses of find_library. Fixes #1450593 `find_library()` doesn't consider LD_LIBRARY_PATH on Python < 3.6. + +Change-Id: Iee26085cb5d14061001f19f032c2664d69a378a8 --- api/examples/getvolfile.py | 2 +- geo-replication/syncdaemon/libcxattr.py | 3 +-- - geo-replication/syncdaemon/libgfchangelog.py | 3 +-- + geo-replication/syncdaemon/libgfchangelog.py | 6 ++---- tests/features/ipctest.py | 10 ++-------- tests/utils/libcxattr.py | 5 ++--- tools/glusterfind/src/libgfchangelog.py | 3 +-- .../features/changelog/lib/examples/python/libgfchangelog.py | 3 +-- - 7 files changed, 9 insertions(+), 20 deletions(-) + 7 files changed, 10 insertions(+), 22 deletions(-) diff --git a/api/examples/getvolfile.py b/api/examples/getvolfile.py -index 0c95213..32c2268 100755 +index 0c95213f0..32c2268b3 100755 --- a/api/examples/getvolfile.py +++ b/api/examples/getvolfile.py @@ -3,7 +3,7 @@ @@ -28,7 +30,7 @@ index 0c95213..32c2268 100755 ctypes.c_void_p, ctypes.c_ulong] diff --git a/geo-replication/syncdaemon/libcxattr.py b/geo-replication/syncdaemon/libcxattr.py -index 3671e10..f576648 100644 +index 3671e102c..f576648b7 100644 --- a/geo-replication/syncdaemon/libcxattr.py +++ b/geo-replication/syncdaemon/libcxattr.py @@ -10,7 +10,6 @@ @@ -49,25 +51,28 @@ index 3671e10..f576648 100644 @classmethod def geterrno(cls): diff --git a/geo-replication/syncdaemon/libgfchangelog.py b/geo-replication/syncdaemon/libgfchangelog.py -index d87b56c..003c28c 100644 +index 334f5e9ea..093ae157a 100644 --- a/geo-replication/syncdaemon/libgfchangelog.py +++ b/geo-replication/syncdaemon/libgfchangelog.py -@@ -10,12 +10,11 @@ +@@ -9,14 +9,12 @@ + # import os - from ctypes import CDLL, RTLD_GLOBAL, create_string_buffer, get_errno, byref, c_ulong +-from ctypes import CDLL, RTLD_GLOBAL, create_string_buffer, \ +- get_errno, byref, c_ulong -from ctypes.util import find_library ++from ctypes import CDLL, RTLD_GLOBAL, create_string_buffer, get_errno, byref, c_ulong from syncdutils import ChangelogException, ChangelogHistoryNotAvailable class Changes(object): -- libgfc = CDLL(find_library("gfchangelog"), mode=RTLD_GLOBAL, use_errno=True) -+ libgfc = CDLL("libgfchangelog.so", mode=RTLD_GLOBAL, use_errno=True) +- libgfc = CDLL(find_library("gfchangelog"), mode=RTLD_GLOBAL, ++ libgfc = CDLL("libgfchangelog.so", mode=RTLD_GLOBAL, + use_errno=True) @classmethod - def geterrno(cls): diff --git a/tests/features/ipctest.py b/tests/features/ipctest.py -index 5aff319..9339248 100755 +index 5aff319b8..933924861 100755 --- a/tests/features/ipctest.py +++ b/tests/features/ipctest.py @@ -1,14 +1,8 @@ @@ -88,7 +93,7 @@ index 5aff319..9339248 100755 api.glfs_ipc.argtypes = [ ctypes.c_void_p, ctypes.c_int, ctypes.c_void_p, ctypes.c_void_p ] api.glfs_ipc.restype = ctypes.c_int diff --git a/tests/utils/libcxattr.py b/tests/utils/libcxattr.py -index 149db72..4e6e6c4 100644 +index 149db72e6..4e6e6c46d 100644 --- a/tests/utils/libcxattr.py +++ b/tests/utils/libcxattr.py @@ -11,7 +11,6 @@ @@ -112,10 +117,10 @@ index 149db72..4e6e6c4 100644 @classmethod def geterrno(cls): diff --git a/tools/glusterfind/src/libgfchangelog.py b/tools/glusterfind/src/libgfchangelog.py -index dd8153e..da822cf 100644 +index 0f6b40d6c..9ca3f326b 100644 --- a/tools/glusterfind/src/libgfchangelog.py +++ b/tools/glusterfind/src/libgfchangelog.py -@@ -12,14 +12,13 @@ +@@ -11,14 +11,13 @@ import os from ctypes import CDLL, get_errno, create_string_buffer, c_ulong, byref from ctypes import RTLD_GLOBAL @@ -132,7 +137,7 @@ index dd8153e..da822cf 100644 def raise_oserr(): diff --git a/xlators/features/changelog/lib/examples/python/libgfchangelog.py b/xlators/features/changelog/lib/examples/python/libgfchangelog.py -index 10e73c0..2cdbf11 100644 +index 10e73c02b..2cdbf1152 100644 --- a/xlators/features/changelog/lib/examples/python/libgfchangelog.py +++ b/xlators/features/changelog/lib/examples/python/libgfchangelog.py @@ -1,9 +1,8 @@ @@ -147,5 +152,5 @@ index 10e73c0..2cdbf11 100644 @classmethod def geterrno(cls): -- -2.7.4 +2.12.0 diff --git a/pkgs/tools/filesystems/snapraid/default.nix b/pkgs/tools/filesystems/snapraid/default.nix index 279d6adf9a22472238f4fb1b96e27d4b30d8ed84..725ff3e56dcd01868957ba9c37ebea0b33914555 100644 --- a/pkgs/tools/filesystems/snapraid/default.nix +++ b/pkgs/tools/filesystems/snapraid/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { name = "snapraid-${version}"; - version = "11.2"; + version = "11.3"; src = fetchFromGitHub { owner = "amadvance"; repo = "snapraid"; rev = "v${version}"; - sha256 = "01z8fl3x2j5bnm0rybj7hhch18is6dkwqc43yzwc6418spr4imsd"; + sha256 = "08rwz55njkr1w794y3hs8nxc11vzbv4drds9wgxpf6ps8qf9q49f"; }; VERSION = version; diff --git a/pkgs/tools/graphics/netpbm/default.nix b/pkgs/tools/graphics/netpbm/default.nix index 05aa7b866360c963ad1df8ce525e0524f91a500d..534cefe9bf6c367b2188f26ea1792101337aa576 100644 --- a/pkgs/tools/graphics/netpbm/default.nix +++ b/pkgs/tools/graphics/netpbm/default.nix @@ -9,7 +9,7 @@ stdenv.mkDerivation rec { src = fetchsvn { url = "https://svn.code.sf.net/p/netpbm/code/advanced"; - rev = 3264; + rev = "3264"; sha256 = "17fmyjbxp1l18rma7gb0m8wd9kx2iwhqs8dd6fpalsn2cr8mf8hf"; }; diff --git a/pkgs/tools/graphics/vulkan-tools/default.nix b/pkgs/tools/graphics/vulkan-tools/default.nix index 0d8f5bfe1bc7bc1e6bccf568788d8333a7a74488..afb6812b3a3a13591fa4a6be840fe72d5cdd9222 100644 --- a/pkgs/tools/graphics/vulkan-tools/default.nix +++ b/pkgs/tools/graphics/vulkan-tools/default.nix @@ -3,17 +3,17 @@ stdenv.mkDerivation rec { name = "vulkan-tools-${version}"; - version = "1.1.82.0"; + version = "1.1.85.0"; src = fetchFromGitHub { owner = "KhronosGroup"; repo = "Vulkan-Tools"; rev = "sdk-${version}"; - sha256 = "1viaqp1zfdgli3hw674rz8mrfzxpgv12vxcd07czwr8nyb19f2g5"; + sha256 = "0f4dfr8g0vy7y1hvs6z9lw52kissailzisby4qnz4akv0zz5y5s5"; }; - nativeBuildInputs = [ pkgconfig ]; - buildInputs = [ cmake python3 vulkan-loader xlibsWrapper libxcb libXrandr wayland ]; + nativeBuildInputs = [ cmake pkgconfig ]; + buildInputs = [ python3 vulkan-loader xlibsWrapper libxcb libXrandr wayland ]; enableParallelBuilding = true; cmakeFlags = [ "-DBUILD_ICD=OFF" "-DGLSLANG_INSTALL_DIR=${glslang}" ]; diff --git a/pkgs/tools/inputmethods/ibus-engines/ibus-m17n/default.nix b/pkgs/tools/inputmethods/ibus-engines/ibus-m17n/default.nix index c53f766cb7d3ed606f1eb5b970d774875cc00673..a0d50cf9479002e2cad2b96a74add25bcfe4281d 100644 --- a/pkgs/tools/inputmethods/ibus-engines/ibus-m17n/default.nix +++ b/pkgs/tools/inputmethods/ibus-engines/ibus-m17n/default.nix @@ -5,13 +5,13 @@ stdenv.mkDerivation rec { name = "ibus-m17n-${version}"; - version = "1.3.4"; + version = "1.4.1"; src = fetchFromGitHub { owner = "ibus"; repo = "ibus-m17n"; rev = version; - sha256 = "1n0bvgc4jyksgvzrw5zs2pxcpxcn3gcc0j2kasbznm34fpv3frsr"; + sha256 = "1xl7swqn46nhi43rka0zx666mpk667ykag3sz07x0zqrwi41frps"; }; buildInputs = [ diff --git a/pkgs/tools/inputmethods/ibus-engines/ibus-typing-booster/default.nix b/pkgs/tools/inputmethods/ibus-engines/ibus-typing-booster/default.nix index b75ce90cf29fbd7016243472f0db9255fc1aa7af..86ff8e68fe7a1b7f0776f4a5d1f1a711f5bf7d4a 100644 --- a/pkgs/tools/inputmethods/ibus-engines/ibus-typing-booster/default.nix +++ b/pkgs/tools/inputmethods/ibus-engines/ibus-typing-booster/default.nix @@ -13,13 +13,13 @@ in stdenv.mkDerivation rec { name = "ibus-typing-booster-${version}"; - version = "2.1.2"; + version = "2.1.3"; src = fetchFromGitHub { owner = "mike-fabian"; repo = "ibus-typing-booster"; rev = version; - sha256 = "0qg49d0hsb1mvq33p14nc6mdw6x3km1ax620gphczfmz9ki5bf4g"; + sha256 = "1v9w5ak8ixasny7nkiwf6q058795c349dc2gr7jjpkz94gd4qls5"; }; patches = [ ./hunspell-dirs.patch ]; diff --git a/pkgs/tools/inputmethods/libinput-gestures/default.nix b/pkgs/tools/inputmethods/libinput-gestures/default.nix index 77eae2c55e1d2cd127ae741678900eecc3680501..75670dfe9dfb5efb56bb075291f9b3129b6f030c 100644 --- a/pkgs/tools/inputmethods/libinput-gestures/default.nix +++ b/pkgs/tools/inputmethods/libinput-gestures/default.nix @@ -5,14 +5,14 @@ }: stdenv.mkDerivation rec { pname = "libinput-gestures"; - version = "2.38"; + version = "2.39"; name = "${pname}-${version}"; src = fetchFromGitHub { owner = "bulletmark"; repo = "libinput-gestures"; rev = version; - sha256 = "1nxvlifag04v56grdwxc3l92kmf51c4w2lq42a3w76yc6p4nxw1m"; + sha256 = "0bzyi55yhr9wyar9mnd09cr6pi88jkkp0f9lndm0a9jwi1xr4bdf"; }; patches = [ ./0001-hardcode-name.patch diff --git a/pkgs/tools/misc/bat/default.nix b/pkgs/tools/misc/bat/default.nix index 4bd4a02c7a2d5e35b5edd8237effc203e6868a07..b4913970715a0c0f704f6cf13b4bb33765d34bd0 100644 --- a/pkgs/tools/misc/bat/default.nix +++ b/pkgs/tools/misc/bat/default.nix @@ -4,17 +4,17 @@ rustPlatform.buildRustPackage rec { name = "bat-${version}"; - version = "0.8.0"; + version = "0.9.0"; src = fetchFromGitHub { owner = "sharkdp"; repo = "bat"; rev = "v${version}"; - sha256 = "1xvjw61q0qbnzj95g7g8xckcqha9jrf2172b5l7faj7i0jhmz2kx"; + sha256 = "13c88h1m9flmx3x2h7xrnb1wy4vgdxsqahw8cqa0x61ay0019a7s"; fetchSubmodules = true; }; - cargoSha256 = "0xv769f2iqrgnbmb7ma9p3gbb2xpx2lhqc0kq5nizf8w8xdc5m11"; + cargoSha256 = "1clng4rl7mq50z8d5ipmr9fapjj4qmpf4gmdnfl6vs35pq3wp9j4"; nativeBuildInputs = [ cmake pkgconfig zlib ]; diff --git a/pkgs/tools/misc/bdf2psf/default.nix b/pkgs/tools/misc/bdf2psf/default.nix index c9775ac6ae35337070a8b9e12e99a6def9e4048c..ac6f8c97c7b6d9df8eb8e0dd13a5610efb669e30 100644 --- a/pkgs/tools/misc/bdf2psf/default.nix +++ b/pkgs/tools/misc/bdf2psf/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { name = "bdf2psf-${version}"; - version = "1.185"; + version = "1.187"; src = fetchurl { url = "mirror://debian/pool/main/c/console-setup/bdf2psf_${version}_all.deb"; - sha256 = "0i8ppqj6yhdkvjkwfl588f2zpaybj61pq64bhlnmc8c4snwpn1z6"; + sha256 = "05r5jg7n4hbdxcy3kc7038h1r0fkipwld6kd0d49nbkmywl2k1a8"; }; buildInputs = [ dpkg ]; diff --git a/pkgs/tools/misc/ckb/default.nix b/pkgs/tools/misc/ckb-next/default.nix similarity index 56% rename from pkgs/tools/misc/ckb/default.nix rename to pkgs/tools/misc/ckb-next/default.nix index 57be1b89e4694b1294afcea6c8311e71922e7a97..fdb0f008a6cb71608a16194603a8bede0be1e31c 100644 --- a/pkgs/tools/misc/ckb/default.nix +++ b/pkgs/tools/misc/ckb-next/default.nix @@ -1,15 +1,15 @@ { stdenv, fetchFromGitHub, substituteAll, udev -, pkgconfig, qtbase, qmake, zlib, kmod }: +, pkgconfig, qtbase, cmake, zlib, kmod }: stdenv.mkDerivation rec { - version = "0.2.9"; + version = "0.3.2"; name = "ckb-next-${version}"; src = fetchFromGitHub { owner = "ckb-next"; repo = "ckb-next"; rev = "v${version}"; - sha256 = "0hl41znyhp3k5l9rcgz0gig36gsg95ivrs1dyngv45q9jkr6fchm"; + sha256 = "0ri5n7r1vhsgk6s64abvqcdrs5fmlwprw0rxiwfy0j8a9qcic1dr"; }; buildInputs = [ @@ -20,29 +20,19 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ pkgconfig - qmake + cmake ]; patches = [ - ./ckb-animations-location.patch + ./install-dirs.patch + ./systemd-service.patch (substituteAll { - name = "ckb-modprobe.patch"; - src = ./ckb-modprobe.patch; + name = "ckb-next-modprobe.patch"; + src = ./modprobe.patch; inherit kmod; }) ]; - doCheck = false; - - installPhase = '' - runHook preInstall - - install -D --mode 0755 --target-directory $out/bin bin/ckb-daemon bin/ckb - install -D --mode 0755 --target-directory $out/libexec/ckb-animations bin/ckb-animations/* - - runHook postInstall - ''; - meta = with stdenv.lib; { description = "Driver and configuration tool for Corsair keyboards and mice"; homepage = https://github.com/ckb-next/ckb-next; diff --git a/pkgs/tools/misc/ckb-next/install-dirs.patch b/pkgs/tools/misc/ckb-next/install-dirs.patch new file mode 100644 index 0000000000000000000000000000000000000000..5545292a65ee47967c9686b80be7af4cbb4cb222 --- /dev/null +++ b/pkgs/tools/misc/ckb-next/install-dirs.patch @@ -0,0 +1,32 @@ +diff --git a/src/daemon/CMakeLists.txt b/src/daemon/CMakeLists.txt +index 09056a7..1bb4595 100644 +--- a/src/daemon/CMakeLists.txt ++++ b/src/daemon/CMakeLists.txt +@@ -456,7 +456,7 @@ endif () + if (LINUX) + install( + FILES "${CMAKE_SOURCE_DIR}/linux/udev/99-ckb-daemon.rules" +- DESTINATION "/etc/udev/rules.d" ++ DESTINATION "${CMAKE_INSTALL_PREFIX}/lib/udev/rules.d" + PERMISSIONS + OWNER_READ OWNER_WRITE + GROUP_READ +diff --git a/src/libs/ckb-next/CMakeLists.txt b/src/libs/ckb-next/CMakeLists.txt +index ecc591c..35de563 100644 +--- a/src/libs/ckb-next/CMakeLists.txt ++++ b/src/libs/ckb-next/CMakeLists.txt +@@ -75,12 +75,12 @@ if(NOT MACOS) + NAMESPACE + ${CMAKE_PROJECT_NAME}:: + DESTINATION +- "/usr/lib/cmake/${CMAKE_PROJECT_NAME}/${PROJECT_NAME}") ++ "${CMAKE_INSTALL_PREFIX}/lib/cmake/${CMAKE_PROJECT_NAME}/${PROJECT_NAME}") + + install( + FILES + "cmake/${PROJECT_NAME}Config.cmake" + "${CMAKE_CURRENT_BINARY_DIR}/${PROJECT_NAME}/${PROJECT_NAME}ConfigVersion.cmake" + DESTINATION +- "/usr/lib/cmake/${CMAKE_PROJECT_NAME}/${PROJECT_NAME}") ++ "${CMAKE_INSTALL_PREFIX}/lib/cmake/${CMAKE_PROJECT_NAME}/${PROJECT_NAME}") + endif() diff --git a/pkgs/tools/misc/ckb-next/modprobe.patch b/pkgs/tools/misc/ckb-next/modprobe.patch new file mode 100644 index 0000000000000000000000000000000000000000..f2156fc3b23bb01a990016a25dd93a3ba83bf238 --- /dev/null +++ b/pkgs/tools/misc/ckb-next/modprobe.patch @@ -0,0 +1,26 @@ +diff --git a/src/daemon/input_linux.c b/src/daemon/input_linux.c +index 1cedb07..8e0b24b 100644 +--- a/src/daemon/input_linux.c ++++ b/src/daemon/input_linux.c +@@ -58,7 +58,7 @@ int os_inputopen(usbdevice* kb){ + /// First check whether the uinput module is loaded by the kernel. + /// + // Load the uinput module (if it's not loaded already) +- if(system("modprobe uinput") != 0) { ++ if(system("@kmod@/bin/modprobe uinput") != 0) { + ckb_fatal("Failed to load uinput module\n"); + return 1; + } +diff --git a/src/gui/mainwindow.cpp b/src/gui/mainwindow.cpp +index 3601146..3f2f78f 100644 +--- a/src/gui/mainwindow.cpp ++++ b/src/gui/mainwindow.cpp +@@ -251,7 +251,7 @@ void MainWindow::updateVersion(){ + daemonWarning.append(tr("
Warning: System Extension by \"Fumihiko Takayama\" is not allowed in Security & Privacy. Please allow it and then unplug and replug your devices.")); + #elif defined(Q_OS_LINUX) + QProcess modprobe; +- modprobe.start("modprobe", QStringList("uinput")); ++ modprobe.start("@kmod@/bin/modprobe", QStringList("uinput")); + + if(!modprobe.waitForFinished()) + qDebug() << "Modprobe error"; diff --git a/pkgs/tools/misc/ckb-next/systemd-service.patch b/pkgs/tools/misc/ckb-next/systemd-service.patch new file mode 100644 index 0000000000000000000000000000000000000000..917bc09627f7633cf1caddcfa34f448e813b26ea --- /dev/null +++ b/pkgs/tools/misc/ckb-next/systemd-service.patch @@ -0,0 +1,45 @@ +diff --git a/src/daemon/CMakeLists.txt b/src/daemon/CMakeLists.txt +index 09056a7..72a7249 100644 +--- a/src/daemon/CMakeLists.txt ++++ b/src/daemon/CMakeLists.txt +@@ -249,12 +249,7 @@ elseif (LINUX) + # but it is not enabled by default and systemd is used instead. (Ubuntu 15.04+) + + # A way to check for upstart +- execute_process( +- COMMAND initctl --version +- OUTPUT_VARIABLE initctl_output +- OUTPUT_STRIP_TRAILING_WHITESPACE) +- +- if ("${initctl_output}" MATCHES "upstart") ++ if (FALSE) + message(STATUS "upstart detected") + set(CKB_NEXT_INIT_SYSTEM "upstart" CACHE INTERNAL "") + set(DISALLOW_SYSVINIT TRUE) +@@ -292,7 +287,7 @@ elseif (LINUX) + endif () + + # A way to check for systemd +- if (EXISTS "/run/systemd/system") ++ if (TRUE) + message(STATUS "systemd detected") + set(CKB_NEXT_INIT_SYSTEM "systemd" CACHE INTERNAL "") + set(DISALLOW_SYSVINIT TRUE) +@@ -328,7 +323,7 @@ elseif (LINUX) + endif () + + # A way to check for OpenRC +- if (EXISTS "/run/openrc/softlevel") ++ if (FALSE) + message(STATUS "OpenRC detected") + set(CKB_NEXT_INIT_SYSTEM "OpenRC" CACHE INTERNAL "") + set(DISALLOW_SYSVINIT TRUE) +@@ -419,7 +414,7 @@ if ("${CKB_NEXT_INIT_SYSTEM}" STREQUAL "launchd") + elseif ("${CKB_NEXT_INIT_SYSTEM}" STREQUAL "systemd") + install( + FILES "${CMAKE_CURRENT_BINARY_DIR}/service/ckb-next-daemon.service" +- DESTINATION "/usr/lib/systemd/system" ++ DESTINATION "${CMAKE_INSTALL_PREFIX}/lib/systemd/system" + PERMISSIONS + OWNER_READ OWNER_WRITE + GROUP_READ diff --git a/pkgs/tools/misc/ckb/ckb-animations-location.patch b/pkgs/tools/misc/ckb/ckb-animations-location.patch deleted file mode 100644 index 8e53685e76a6168ed29f23cc6e57668705044d60..0000000000000000000000000000000000000000 --- a/pkgs/tools/misc/ckb/ckb-animations-location.patch +++ /dev/null @@ -1,12 +0,0 @@ -diff --git a/src/ckb/animscript.cpp b/src/ckb/animscript.cpp -index f49a64c..d7a3459 100644 ---- a/src/ckb/animscript.cpp -+++ b/src/ckb/animscript.cpp -@@ -30,7 +30,7 @@ QString AnimScript::path(){ - #ifdef __APPLE__ - return QDir(QApplication::applicationDirPath() + "/../Resources").absoluteFilePath("ckb-animations"); - #else -- return QDir("/usr/lib").absoluteFilePath("ckb-animations"); -+ return QDir(QApplication::applicationDirPath() + "/../libexec").absoluteFilePath("ckb-animations"); - #endif - } diff --git a/pkgs/tools/misc/ckb/ckb-modprobe.patch b/pkgs/tools/misc/ckb/ckb-modprobe.patch deleted file mode 100644 index 8024151159cf8e11d367bfdd26e9cc812255f95a..0000000000000000000000000000000000000000 --- a/pkgs/tools/misc/ckb/ckb-modprobe.patch +++ /dev/null @@ -1,13 +0,0 @@ -diff --git a/src/ckb-daemon/usb_linux.c b/src/ckb-daemon/usb_linux.c -index 8673f86..4714305 100644 ---- a/src/ckb-daemon/usb_linux.c -+++ b/src/ckb-daemon/usb_linux.c -@@ -440,7 +440,7 @@ static void udev_enum(){ - - int usbmain(){ - // Load the uinput module (if it's not loaded already) -- if(system("modprobe uinput") != 0) -+ if(system("@kmod@/bin/modprobe uinput") != 0) - ckb_warn("Failed to load uinput module\n"); - - // Create the udev object diff --git a/pkgs/tools/misc/contacts/default.nix b/pkgs/tools/misc/contacts/default.nix index dc8f776cef66f0a641de13d091eee9c5641bdb67..b262626b1363e9467fc06a71541f3f664df0ffe7 100644 --- a/pkgs/tools/misc/contacts/default.nix +++ b/pkgs/tools/misc/contacts/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchurl, xcbuildHook, Foundation, AddressBook }: +{ stdenv, fetchurl, xcbuildHook, cf-private, Foundation, AddressBook }: stdenv.mkDerivation rec { version = "1.1a-3"; @@ -10,16 +10,18 @@ stdenv.mkDerivation rec { }; nativeBuildInputs = [ xcbuildHook ]; - buildInputs = [ Foundation AddressBook ]; + + buildInputs = [ + Foundation AddressBook + # Needed for OBJC_CLASS_$_NSArray symbols. + cf-private + ]; installPhase = '' mkdir -p $out/bin cp Products/Default/contacts $out/bin ''; - ## FIXME: the framework setup hook isn't adding these correctly - NIX_LDFLAGS = " -F${Foundation}/Library/Frameworks/ -F${AddressBook}/Library/Frameworks/"; - meta = with stdenv.lib; { description = "Access contacts from the Mac address book from command-line"; homepage = http://www.gnufoo.org/contacts/contacts.html; diff --git a/pkgs/tools/misc/debootstrap/default.nix b/pkgs/tools/misc/debootstrap/default.nix index 9c3db47213ec2bded3c4b53e17df24e68be1b1aa..1b2cdf0402ae56928fe4f4e3c59176274313d8c3 100644 --- a/pkgs/tools/misc/debootstrap/default.nix +++ b/pkgs/tools/misc/debootstrap/default.nix @@ -15,13 +15,13 @@ let binPath = stdenv.lib.makeBinPath [ ]; in stdenv.mkDerivation rec { name = "debootstrap-${version}"; - version = "1.0.109"; + version = "1.0.110"; src = fetchurl { # git clone git://git.debian.org/d-i/debootstrap.git # I'd like to use the source. However it's lacking the lanny script ? (still true?) url = "mirror://debian/pool/main/d/debootstrap/debootstrap_${version}.tar.gz"; - sha256 = "117xgrv6mpszyndmsvkn4ynh57b2s40qc68bpmfmxggw58j42klw"; + sha256 = "11bqy2dbqsy9fyx1i6lj0aj1pvq15y8kkwjfrp18k3nvy74y80ca"; }; nativeBuildInputs = [ makeWrapper ]; diff --git a/pkgs/tools/misc/diskus/default.nix b/pkgs/tools/misc/diskus/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..55489aec32a2f2a1023d994b464397e705f3cbc9 --- /dev/null +++ b/pkgs/tools/misc/diskus/default.nix @@ -0,0 +1,23 @@ +{ stdenv, fetchFromGitHub, rustPlatform }: + +rustPlatform.buildRustPackage rec { + name = "diskus-${version}"; + version = "0.4.0"; + + src = fetchFromGitHub { + owner = "sharkdp"; + repo = "diskus"; + rev = "cf4a5e0dc5bf3daedabe4b25343e7eb6238930c0"; + sha256 = "1w5fnpwdsfaca2177qn0clf8j7zwgzhdckjdl2zdbs5qrdwdqrd2"; + }; + + cargoSha256 = "08wm85cs0fi03a75wp276w5hgch3kd787py51jjcxdanm2viq7zv"; + + meta = with stdenv.lib; { + description = "A minimal, fast alternative to 'du -sh'"; + homepage = https://github.com/sharkdp/diskus; + license = with licenses; [ asl20 /* or */ mit ]; + maintainers = [ maintainers.fuerbringer ]; + platforms = platforms.linux; + }; +} diff --git a/pkgs/tools/misc/doitlive/default.nix b/pkgs/tools/misc/doitlive/default.nix index a8ff34af97574c77806c62625d48420ab1411514..d322a19c98a37d2aa9127ffa3230125bc1f2ea2a 100644 --- a/pkgs/tools/misc/doitlive/default.nix +++ b/pkgs/tools/misc/doitlive/default.nix @@ -2,11 +2,11 @@ python3Packages.buildPythonApplication rec { pname = "doitlive"; - version = "4.0.1"; + version = "4.1.0"; src = python3Packages.fetchPypi { inherit pname version; - sha256 = "1icnjkczy52i3cp1fmsijqny571fz1h4b3wpdzz79cn90fr326pc"; + sha256 = "0zkvmnv6adz0gyqiql8anpxnh8zzpqk0p2n0pf2kxy55010qs4wz"; }; propagatedBuildInputs = with python3Packages; [ click click-completion click-didyoumean ]; diff --git a/pkgs/tools/misc/fwup/default.nix b/pkgs/tools/misc/fwup/default.nix index 97eedd9be25ebcf517678363f4c644b92732a535..160ea2faab61f296288a000c69d64e0145bf0014 100644 --- a/pkgs/tools/misc/fwup/default.nix +++ b/pkgs/tools/misc/fwup/default.nix @@ -4,13 +4,13 @@ stdenv.mkDerivation rec { name = "fwup-${version}"; - version = "1.2.5"; + version = "1.2.6"; src = fetchFromGitHub { owner = "fhunleth"; repo = "fwup"; rev = "v${version}"; - sha256 = "0kraip4lr3fvcxvvq1dwjw7fyzs6bcjg14xn0g52985krxxn5pdc"; + sha256 = "1rbpa0dcm9w1anz2bhcpmj2b678807s8j43zzkbkwh71aymfwr14"; }; doCheck = true; diff --git a/pkgs/tools/misc/hashit/default.nix b/pkgs/tools/misc/hashit/default.nix index 69d73aafff92d648436ed4ff610f23a80d33ff95..46e460db354fb3e50c16208732842aace71f88c9 100644 --- a/pkgs/tools/misc/hashit/default.nix +++ b/pkgs/tools/misc/hashit/default.nix @@ -1,8 +1,8 @@ -{ stdenv, fetchFromGitHub, meson, ninja, pkgconfig, cmake, vala, python3, gnome3, gtk3, granite, gobjectIntrospection, wrapGAppsHook }: +{ stdenv, fetchFromGitHub, meson, ninja, pkgconfig, cmake, vala_0_40, python3, gnome3, gtk3, granite, gobjectIntrospection, desktop-file-utils, wrapGAppsHook }: stdenv.mkDerivation rec { pname = "hashit"; - version = "0.2.0"; + version = "1.0.0"; name = "${pname}-${version}"; @@ -10,30 +10,37 @@ stdenv.mkDerivation rec { owner = "artemanufrij"; repo = pname; rev = version; - sha256 = "1d2g7cm7hhs354waidak9xkhhcvqlwnsl9d0bar9p82gfnpjdg7v"; + sha256 = "1ba38qmwdk7vkarsxqn89irbymzx52gbks4isx0klg880xm2z4dv"; }; nativeBuildInputs = [ + desktop-file-utils gobjectIntrospection meson ninja pkgconfig python3 - vala + vala_0_40 # should be `elementary.vala` when elementary attribute set is merged wrapGAppsHook ]; buildInputs = [ + gnome3.defaultIconTheme # should be `elementary.defaultIconTheme`when elementary attribute set is merged + gnome3.libgee granite gtk3 - gnome3.libgee ]; + postPatch = '' + chmod +x meson/post_install.py + patchShebangs meson/post_install.py + ''; + meta = with stdenv.lib; { description = "A simple app for checking usual checksums"; - homepage = https://github.com/artemanufrij/hashit; - license = licenses.gpl2Plus; + homepage = https://github.com/artemanufrij/hashit; + license = licenses.gpl2Plus; maintainers = with maintainers; [ worldofpeace ]; - platforms = platforms.linux; + platforms = platforms.linux; }; } diff --git a/pkgs/tools/misc/hebcal/default.nix b/pkgs/tools/misc/hebcal/default.nix index da231c16cc90813027243768847160a33ebd6adb..edb5973fbb70940921ab025f4900d00f2ad0ef5a 100644 --- a/pkgs/tools/misc/hebcal/default.nix +++ b/pkgs/tools/misc/hebcal/default.nix @@ -1,14 +1,14 @@ { stdenv, fetchFromGitHub, autoreconfHook }: stdenv.mkDerivation rec { - version = "4.14"; + version = "4.15"; name = "hebcal-${version}"; src = fetchFromGitHub { owner = "hebcal"; repo = "hebcal"; rev = "v${version}"; - sha256 = "1zq8f7cigh5r31p03az338sbygkx8gbday35c9acppglci3r8fvc"; + sha256 = "1s9iardqyzn42hs0x9p4rig2m87v87jvzcrbb9arcci7nds66y3i"; }; nativeBuildInputs = [ autoreconfHook ]; diff --git a/pkgs/tools/misc/jdupes/default.nix b/pkgs/tools/misc/jdupes/default.nix index 991066690ee4b6f8e580d3e48d450f87a9fda64b..0df351bdd56062cc153a5c26a9ca6be9f13be7f7 100644 --- a/pkgs/tools/misc/jdupes/default.nix +++ b/pkgs/tools/misc/jdupes/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { name = "jdupes-${version}"; - version = "1.10.4"; + version = "1.11"; src = fetchFromGitHub { owner = "jbruchon"; repo = "jdupes"; rev = "v${version}"; - sha256 = "03a2jxv634xy5qwjrk784k3y3pd8f94pndf5m84yg2y7i8dvppnk"; + sha256 = "124n9vgnqqhnwgnms7dqmndp25xrcjaykxrzbi4v4as98kxxi3j1"; # Unicode file names lead to different checksums on HFS+ vs. other # filesystems because of unicode normalisation. The testdir # directories have such files and will be removed. diff --git a/pkgs/tools/misc/noti/default.nix b/pkgs/tools/misc/noti/default.nix index 23646abe787564805d3c4634c9931196ae85678b..43165b4f54bb39ee3176bec011aec7750a3bdced 100644 --- a/pkgs/tools/misc/noti/default.nix +++ b/pkgs/tools/misc/noti/default.nix @@ -1,4 +1,4 @@ -{ stdenv, buildGoPackage, fetchFromGitHub, Cocoa }: +{ stdenv, buildGoPackage, fetchFromGitHub, cf-private, Cocoa }: buildGoPackage rec { name = "noti-${version}"; @@ -11,7 +11,7 @@ buildGoPackage rec { sha256 = "1chsqfqk0pnhx5k2nr4c16cpb8m6zv69l1jvv4v4903zgfzcm823"; }; - buildInputs = stdenv.lib.optionals stdenv.isDarwin [ Cocoa ]; + buildInputs = stdenv.lib.optionals stdenv.isDarwin [ Cocoa cf-private /* For OBJC_CLASS_$_NSDate */ ]; # TODO: Remove this when we update apple_sdk NIX_CFLAGS_COMPILE = stdenv.lib.optionals stdenv.isDarwin [ "-fno-objc-arc" ]; diff --git a/pkgs/tools/misc/patdiff/default.nix b/pkgs/tools/misc/patdiff/default.nix index ef848bb43f265e08893a13a91a936557101c9f28..f67a8274443cc05ebf9389f692a7d5943e6aaf75 100644 --- a/pkgs/tools/misc/patdiff/default.nix +++ b/pkgs/tools/misc/patdiff/default.nix @@ -3,7 +3,7 @@ with ocamlPackages; janePackage { - name = "patdiff"; + pname = "patdiff"; hash = "02cdn5j5brbp4n2rpxprzxfakjbl7n2llixg7m632bih3ppmfcq1"; buildInputs = [ core_extended expect_test_helpers patience_diff ocaml_pcre ]; meta = { diff --git a/pkgs/tools/misc/pgmetrics/default.nix b/pkgs/tools/misc/pgmetrics/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..64d290ad89e3faabc4b1e667636b609a54ec16b7 --- /dev/null +++ b/pkgs/tools/misc/pgmetrics/default.nix @@ -0,0 +1,24 @@ +{ stdenv, buildGoPackage, fetchFromGitHub }: + +buildGoPackage rec { + name = "pgmetrics-${version}"; + version = "1.5.0"; + + goPackagePath = "github.com/rapidloop/pgmetrics"; + + src = fetchFromGitHub { + owner = "rapidloop"; + repo = "pgmetrics"; + rev = "refs/tags/v${version}"; + sha256 = "1l3vd1lvp4a6irx0zpjb5bkskkb9krx9j7pwii8jy9dcjy4gj24f"; + }; + + goDeps = ./deps.nix; + + meta = with stdenv.lib; { + homepage = https://pgmetrics.io/; + description = "Collect and display information and stats from a running PostgreSQL server"; + license = licenses.asl20; + maintainers = [ maintainers.marsam ]; + }; +} diff --git a/pkgs/tools/misc/pgmetrics/deps.nix b/pkgs/tools/misc/pgmetrics/deps.nix new file mode 100644 index 0000000000000000000000000000000000000000..63b9492a9820660cd4864cd808fa160dc66bfe2d --- /dev/null +++ b/pkgs/tools/misc/pgmetrics/deps.nix @@ -0,0 +1,84 @@ +# file generated from Gopkg.lock using dep2nix (https://github.com/nixcloud/dep2nix) +[ + { + goPackagePath = "github.com/dustin/go-humanize"; + fetch = { + type = "git"; + url = "https://github.com/dustin/go-humanize"; + rev = "bb3d318650d48840a39aa21a027c6630e198e626"; + sha256 = "1lqd8ix3cb164j5iazjby2jpa6bdsflhy0h9mi4yldvvcvrc194c"; + }; + } + { + goPackagePath = "github.com/howeyc/gopass"; + fetch = { + type = "git"; + url = "https://github.com/howeyc/gopass"; + rev = "bf9dde6d0d2c004a008c27aaee91170c786f6db8"; + sha256 = "1jxzyfnqi0h1fzlsvlkn10bncic803bfhslyijcxk55mgh297g45"; + }; + } + { + goPackagePath = "github.com/lib/pq"; + fetch = { + type = "git"; + url = "https://github.com/lib/pq"; + rev = "88edab0803230a3898347e77b474f8c1820a1f20"; + sha256 = "02y7c8xy33x5q4167x2drzrys41nfi7wxxp9hy4vpazfws88al9p"; + }; + } + { + goPackagePath = "github.com/pborman/getopt"; + fetch = { + type = "git"; + url = "https://github.com/pborman/getopt"; + rev = "7148bc3a4c3008adfcab60cbebfd0576018f330b"; + sha256 = "0zhvvmv671r1fbdd5hbv3flx8k2rb60giqx115w0553c56qkqfpj"; + }; + } + { + goPackagePath = "github.com/rapidloop/pq"; + fetch = { + type = "git"; + url = "https://github.com/rapidloop/pq"; + rev = "f379fd34d14f11337c3945aa665f7718c0213317"; + sha256 = "0svhissh6v1qdj9zypvj6jpjrx9g56gq8sf1pila41mczglmni05"; + }; + } + { + goPackagePath = "github.com/xdg-go/stringprep"; + fetch = { + type = "git"; + url = "https://github.com/xdg-go/stringprep"; + rev = "bd625b8dc1e3b0f57412280ccbcc317f0c69d8db"; + sha256 = "03nard51zgzbaq64p6gsvrz8fps3yazl3ydd115y0bppkdx2i4ji"; + }; + } + { + goPackagePath = "golang.org/x/crypto"; + fetch = { + type = "git"; + url = "https://go.googlesource.com/crypto"; + rev = "432090b8f568c018896cd8a0fb0345872bbac6ce"; + sha256 = "1i8616qqwih6g5nx8c1hfqhp0kb110ml3xkgsn6qvc36q04amjmq"; + }; + } + { + goPackagePath = "golang.org/x/sys"; + fetch = { + type = "git"; + url = "https://go.googlesource.com/sys"; + rev = "37707fdb30a5b38865cfb95e5aab41707daec7fd"; + sha256 = "1abrr2507a737hdqv4q7pw7hv6ls9pdiq9crhdi52r3gcz6hvizg"; + }; + } + { + goPackagePath = "golang.org/x/text"; + fetch = { + type = "git"; + url = "https://go.googlesource.com/text"; + rev = "f21a4dfb5e38f5895301dc265a8def02365cc3d0"; + sha256 = "0r6x6zjzhr8ksqlpiwm5gdd7s209kwk5p4lw54xjvz10cs3qlq19"; + }; + } +] \ No newline at end of file diff --git a/pkgs/tools/misc/snapper/default.nix b/pkgs/tools/misc/snapper/default.nix index 80b66026848ee2e1d1883de9a13a8679e961fb31..ff7518b04deac15847999ce9487e074230caea1e 100644 --- a/pkgs/tools/misc/snapper/default.nix +++ b/pkgs/tools/misc/snapper/default.nix @@ -5,13 +5,13 @@ stdenv.mkDerivation rec { name = "snapper-${version}"; - version = "0.7.2"; + version = "0.8.0"; src = fetchFromGitHub { owner = "openSUSE"; repo = "snapper"; rev = "v${version}"; - sha256 = "1dm1kf4wrbcaaagxgbc8q0f5j9dq3bmp6ycl7zx8p70s4nv3xnbc"; + sha256 = "1blllmkwh13pnf3hxi1p2az5i77arbm2661n0rd0569s6kf5brb7"; }; nativeBuildInputs = [ diff --git a/pkgs/tools/misc/svtplay-dl/default.nix b/pkgs/tools/misc/svtplay-dl/default.nix index e29e799898c36adba3609b74a0912ab32b96be18..5502f2542f12e1fa10c218a64f306a14afd2908c 100644 --- a/pkgs/tools/misc/svtplay-dl/default.nix +++ b/pkgs/tools/misc/svtplay-dl/default.nix @@ -1,22 +1,22 @@ { stdenv, fetchFromGitHub, makeWrapper, python3Packages, perl, zip -, rtmpdump }: +, rtmpdump, gitMinimal }: let - inherit (python3Packages) python nose pycrypto requests mock; + inherit (python3Packages) python nose pycrypto pyyaml requests mock; in stdenv.mkDerivation rec { name = "svtplay-dl-${version}"; - version = "1.9.11"; + version = "2.1"; src = fetchFromGitHub { owner = "spaam"; repo = "svtplay-dl"; rev = version; - sha256 = "14p2362rzyblma9321z4zrcbzfs9m269ry6sz44ly0bv5fik7gdy"; + sha256 = "1cnc32gbhs955391hs1x1jpjsl3b6pqy7ysdydmp9q1i2rw105ln"; }; - pythonPaths = [ pycrypto requests ]; + pythonPaths = [ pycrypto pyyaml requests ]; buildInputs = [ python perl nose mock rtmpdump makeWrapper ] ++ pythonPaths; - nativeBuildInputs = [ zip ]; + nativeBuildInputs = [ gitMinimal zip ]; postPatch = '' substituteInPlace lib/svtplay_dl/fetcher/rtmp.py \ diff --git a/pkgs/tools/misc/tio/default.nix b/pkgs/tools/misc/tio/default.nix index 6e17ce26e0de45745e9fef8f9efbf228234b979e..ed26895fba6f302c7dc8947b4135500a92b69fb6 100644 --- a/pkgs/tools/misc/tio/default.nix +++ b/pkgs/tools/misc/tio/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { name = "tio-${version}"; - version = "1.31"; + version = "1.32"; src = fetchzip { url = "https://github.com/tio/tio/archive/v${version}.tar.gz"; - sha256 = "1164ida1vxvm0z76nmkk2d5y9i3wj8rni9sl1mid6c09gi4k2slk"; + sha256 = "0lwqdm73kshi9qs8pks1b4by6yb9jf3bbyw3bv52xmggnr5s1hcv"; }; nativeBuildInputs = [ autoreconfHook ]; diff --git a/pkgs/tools/misc/tmux/default.nix b/pkgs/tools/misc/tmux/default.nix index 038b3206ac2449119bb976fc256ba39490cc446c..192c5eb0823b08720a63bf73e7fc4625d9541cf1 100644 --- a/pkgs/tools/misc/tmux/default.nix +++ b/pkgs/tools/misc/tmux/default.nix @@ -20,8 +20,8 @@ stdenv.mkDerivation rec { src = fetchFromGitHub { owner = "tmux"; repo = "tmux"; - rev = version; - sha256 = "0n8sjddy00xgh1rvvw968hh72pyslg1gahmzajfc4b3xax87drpi"; + rev = "01918cb0170e07288d3aec624516e6470bf5b7fc"; + sha256 = "1fy87wvxn7r7jzqapvjisc1iizic3kxqk2lv83giqmw1y4g3s7rl"; }; postPatch = '' diff --git a/pkgs/tools/misc/up/default.nix b/pkgs/tools/misc/up/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..c09c5ad12f0801006c359b73448eff9e0b4948f6 --- /dev/null +++ b/pkgs/tools/misc/up/default.nix @@ -0,0 +1,23 @@ +{ lib, buildGoPackage, fetchFromGitHub }: + +buildGoPackage rec { + name = "up-${version}"; + version = "0.3.1"; + + src = fetchFromGitHub { + owner = "akavel"; + repo = "up"; + rev = "v${version}"; + sha256 = "171bwbk2c7jbi51xdawzv7qy71492mfs9z5j0a5j52qmnr4vjjgs"; + }; + + goPackagePath = "github.com/akavel/up"; + goDeps = ./deps.nix; + + meta = with lib; { + description = "Ultimate Plumber is a tool for writing Linux pipes with instant live preview"; + homepage = https://github.com/akavel/up; + maintainers = with maintainers; [ ma27 ]; + license = licenses.asl20; + }; +} diff --git a/pkgs/tools/misc/up/deps.nix b/pkgs/tools/misc/up/deps.nix new file mode 100644 index 0000000000000000000000000000000000000000..439dc5df9d4d3ff0fd552a48199802ba942f4ddd --- /dev/null +++ b/pkgs/tools/misc/up/deps.nix @@ -0,0 +1,66 @@ +# This file was generated by https://github.com/kamilchm/go2nix v1.2.1 +[ + { + goPackagePath = "github.com/gdamore/encoding"; + fetch = { + type = "git"; + url = "https://github.com/gdamore/encoding"; + rev = "b23993cbb6353f0e6aa98d0ee318a34728f628b9"; + sha256 = "0d7irqpx2fa9vkxgkhf04yiwazsm10fxh0yk86x5crflhph5fv8a"; + }; + } + { + goPackagePath = "github.com/gdamore/tcell"; + fetch = { + type = "git"; + url = "https://github.com/gdamore/tcell"; + rev = "017915a4d77dabd7af10ab539e618a735d4b9c0a"; + sha256 = "19ymkgcvcp9sz2jrfi7h6l720w5yw9hy3wnw975w2ih45j1ypqdh"; + }; + } + { + goPackagePath = "github.com/lucasb-eyer/go-colorful"; + fetch = { + type = "git"; + url = "https://github.com/lucasb-eyer/go-colorful"; + rev = "12d3b2882a08d1abc9488e34f3e1ae35165f2d07"; + sha256 = "1w95axfn1a6rz31xrks77ingr9mdkqyr7mh0glv664kz1wg2h0gw"; + }; + } + { + goPackagePath = "github.com/mattn/go-isatty"; + fetch = { + type = "git"; + url = "https://github.com/mattn/go-isatty"; + rev = "3fb116b820352b7f0c281308a4d6250c22d94e27"; + sha256 = "084hplr4n4g5nvp70clljk428hc963460xz0ggcj3xdi4w7hhsvv"; + }; + } + { + goPackagePath = "github.com/mattn/go-runewidth"; + fetch = { + type = "git"; + url = "https://github.com/mattn/go-runewidth"; + rev = "b20a3daf6a39840c202fd42cc23d53607162b045"; + sha256 = "0crivpncmh22696d5cy7k15ll5yqfjcigk0xy73wb6g1q6vnfxs7"; + }; + } + { + goPackagePath = "github.com/spf13/pflag"; + fetch = { + type = "git"; + url = "https://github.com/spf13/pflag"; + rev = "aea12ed6721610dc6ed40141676d7ab0a1dac9e9"; + sha256 = "17p5k37bnzj6wfh000y7xpvxyv2wsfa3db9sm8da2frjvn7jgbp2"; + }; + } + { + goPackagePath = "golang.org/x/text"; + fetch = { + type = "git"; + url = "https://go.googlesource.com/text"; + rev = "6f44c5a2ea40ee3593d98cdcc905cc1fdaa660e2"; + sha256 = "00mwzxly5isgf0glz7k3k2dkyqkjfc4z55qxajx4lgcp3h8xn9xj"; + }; + } +] diff --git a/pkgs/tools/misc/watchexec/default.nix b/pkgs/tools/misc/watchexec/default.nix index e376568d3503c439a896e69e99774689a17f1dcc..dd3eddf73954737c71dc4918660f93ea0315cc72 100644 --- a/pkgs/tools/misc/watchexec/default.nix +++ b/pkgs/tools/misc/watchexec/default.nix @@ -1,4 +1,4 @@ -{ stdenv, rustPlatform, fetchFromGitHub }: +{ stdenv, rustPlatform, fetchFromGitHub, CoreServices, CoreFoundation }: rustPlatform.buildRustPackage rec { name = "watchexec-${version}"; @@ -13,11 +13,19 @@ rustPlatform.buildRustPackage rec { cargoSha256 = "1li84kq9myaw0zwx69y72f3lx01s7i9p8yays4rwvl1ymr614y1l"; + buildInputs = stdenv.lib.optionals stdenv.isDarwin [ CoreServices ]; + + # FIXME: Use impure version of CoreFoundation because of missing symbols. + # Undefined symbols for architecture x86_64: "_CFURLResourceIsReachable" + preConfigure = stdenv.lib.optionalString stdenv.isDarwin '' + export NIX_LDFLAGS="-F${CoreFoundation}/Library/Frameworks -framework CoreFoundation $NIX_LDFLAGS" + ''; + meta = with stdenv.lib; { description = "Executes commands in response to file modifications"; homepage = https://github.com/watchexec/watchexec; license = with licenses; [ asl20 ]; maintainers = [ maintainers.michalrus ]; - platforms = platforms.linux; + platforms = platforms.linux ++ platforms.darwin; }; } diff --git a/pkgs/tools/misc/yank/default.nix b/pkgs/tools/misc/yank/default.nix index eaefd6d61aa60afc2cdf661c3716f6d6352e9c42..0e88e79eb1ba3f4b61b82e49997077ac5d54f937 100644 --- a/pkgs/tools/misc/yank/default.nix +++ b/pkgs/tools/misc/yank/default.nix @@ -8,7 +8,7 @@ stdenv.mkDerivation rec { owner = "mptre"; repo = "yank"; rev = "v${meta.version}"; - sha256 = "03h99i59kq8jlmshfwas1qm4y5ksw9lxaf9kr14l2mp028g7930n"; + sha256 = "0jhr4ywn5x5s15sczhdyyaqy3xh5z4zsx3g42ma26prpnr4gjczz"; inherit name; }; @@ -27,7 +27,7 @@ stdenv.mkDerivation rec { ''; downloadPage = "https://github.com/mptre/yank/releases"; license = licenses.mit; - version = "1.0.0"; + version = "1.1.0"; maintainers = [ maintainers.dochang ]; platforms = platforms.unix; }; diff --git a/pkgs/tools/misc/you-get/default.nix b/pkgs/tools/misc/you-get/default.nix index 6a56d23f7490324e2cf92c0f0f5f095ac09484bd..2e033c6bc821ef643cff55a9b866f90f1d4575e7 100644 --- a/pkgs/tools/misc/you-get/default.nix +++ b/pkgs/tools/misc/you-get/default.nix @@ -2,7 +2,7 @@ buildPythonApplication rec { pname = "you-get"; - version = "0.4.1148"; + version = "0.4.1167"; # Tests aren't packaged, but they all hit the real network so # probably aren't suitable for a build environment anyway. @@ -10,7 +10,7 @@ buildPythonApplication rec { src = fetchPypi { inherit pname version; - sha256 = "1ypgqaxf5qn5b3c2n4hcsiixyvvpvmpx5gny523cd5igb7h0yja5"; + sha256 = "0lvddm62c0pwx4cksbwh2n0xzz80p26lz1xsvb4z40h7hlwaf41w"; }; meta = with stdenv.lib; { diff --git a/pkgs/tools/misc/youtube-dl/default.nix b/pkgs/tools/misc/youtube-dl/default.nix index 9de0f850d49b84dd7d6acc35e2e36af579a1b5f1..450d5c68245f4f90955effdafc7185962382121b 100644 --- a/pkgs/tools/misc/youtube-dl/default.nix +++ b/pkgs/tools/misc/youtube-dl/default.nix @@ -16,11 +16,14 @@ buildPythonPackage rec { pname = "youtube-dl"; - version = "2018.10.05"; + # The websites youtube-dl deals with are a very moving target. That means that + # downloads break constantly. Because of that, updates should always be backported + # to the latest stable release. + version = "2018.11.07"; src = fetchurl { url = "https://yt-dl.org/downloads/${version}/${pname}-${version}.tar.gz"; - sha256 = "1iq02kwxdgh07bf0w0fvbsjbdshs4kja35gy8m70ji9cj10l1mbw"; + sha256 = "1rvc2m2kbm2kycqsa7fkcg5gql9f0w3hn1a7jg48zzl06ayggxk9"; }; nativeBuildInputs = [ makeWrapper ]; diff --git a/pkgs/tools/networking/eternal-terminal/default.nix b/pkgs/tools/networking/eternal-terminal/default.nix index 36bc2a9bc284946e2e604d668f953b1f0d7bec7d..73eaa07ac8ffd0d9c5bf749bc1071a0d21fdcc31 100644 --- a/pkgs/tools/networking/eternal-terminal/default.nix +++ b/pkgs/tools/networking/eternal-terminal/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { name = "eternal-terminal-${version}"; - version = "5.1.7"; + version = "5.1.8"; src = fetchFromGitHub { owner = "MisterTea"; repo = "EternalTCP"; rev = "refs/tags/et-v${version}"; - sha256 = "17ndpkpyh8hwr6v7ac6029sja95nhn9c1g8r93g20rp0vz3r6lpa"; + sha256 = "0fq9a1fn0c77wfpypl3z7y23gbkw295ksy97wi9lhb5zj2m3dkq0"; }; nativeBuildInputs = [ cmake ninja ]; @@ -17,7 +17,7 @@ stdenv.mkDerivation rec { meta = with stdenv.lib; { description = "Remote shell that automatically reconnects without interrupting the session"; license = licenses.asl20; - homepage = https://mistertea.github.io/EternalTCP/; + homepage = https://mistertea.github.io/EternalTerminal/; platforms = platforms.linux ++ platforms.darwin; maintainers = [ maintainers.dezgeg ]; }; diff --git a/pkgs/tools/networking/getmail/default.nix b/pkgs/tools/networking/getmail/default.nix index ac69fd99265855497943c55167deebf1f8ae40af..db1f383ac0269e6f70ebb6635eb3a3e2ab1f68d9 100644 --- a/pkgs/tools/networking/getmail/default.nix +++ b/pkgs/tools/networking/getmail/default.nix @@ -1,13 +1,12 @@ { stdenv, fetchurl, python2Packages }: python2Packages.buildPythonApplication rec { - version = "5.6"; - name = "getmail-${version}"; - namePrefix = ""; + pname = "getmail"; + version = "5.8"; src = fetchurl { - url = "http://pyropus.ca/software/getmail/old-versions/${name}.tar.gz"; - sha256 = "16nmvj80szr6yvcxxgmxn2lxqpjqqj4xg5a0b66zhvck6j42q3a6"; + url = "http://pyropus.ca/software/getmail/old-versions/${pname}-${version}.tar.gz"; + sha256 = "0vl4cc733pd9d21y4pr4jc1ly657d0akxj1bdh1xfjggx33l3541"; }; doCheck = false; diff --git a/pkgs/tools/networking/grpcurl/default.nix b/pkgs/tools/networking/grpcurl/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..10100b933d4d214879975a9cdfef0258b334c79b --- /dev/null +++ b/pkgs/tools/networking/grpcurl/default.nix @@ -0,0 +1,29 @@ +# This file was generated by https://github.com/kamilchm/go2nix v1.2.1 +# and modified to add meta and switch to fetchFromGitHub +{ stdenv, buildGoPackage, fetchFromGitHub }: + +buildGoPackage rec { + name = "grpcurl-${version}"; + version = "1.0.0"; + rev = "v${version}"; + + goPackagePath = "github.com/fullstorydev/grpcurl"; + + src = fetchFromGitHub { + owner = "fullstorydev"; + repo = "grpcurl"; + rev = "d4d048fade4abcc2f0c3fb6f3e207289401d0a10"; + sha256 = "0v45lwjw2phavhi6m4ql49ri1423m249a6xcf00v9hi2x1y9dh6q"; + }; + + goDeps = if stdenv.isDarwin + then ./deps-darwin.nix + else ./deps-linux.nix; + + meta = { + description = "Like cURL, but for gRPC: Command-line tool for interacting with gRPC servers"; + homepage = https://github.com/fullstorydev/grpcurl; + license = stdenv.lib.licenses.mit; + maintainers = with stdenv.lib.maintainers; [ knl ]; + }; +} diff --git a/pkgs/tools/networking/grpcurl/deps-darwin.nix b/pkgs/tools/networking/grpcurl/deps-darwin.nix new file mode 100644 index 0000000000000000000000000000000000000000..52afa88708f3adcfe06e5afa1329d8f37d4088a1 --- /dev/null +++ b/pkgs/tools/networking/grpcurl/deps-darwin.nix @@ -0,0 +1,57 @@ +# This file was generated by https://github.com/kamilchm/go2nix v1.2.1 +[ + { + goPackagePath = "github.com/golang/protobuf"; + fetch = { + type = "git"; + url = "https://github.com/golang/protobuf"; + rev = "ddf22928ea3c56eb4292a0adbbf5001b1e8e7d0d"; + sha256 = "16awkanx2rgxzhwi9vpm4i8jmmsw10gb104ncwfinvb6a9nzm28l"; + }; + } + { + goPackagePath = "github.com/jhump/protoreflect"; + fetch = { + type = "git"; + url = "https://github.com/jhump/protoreflect"; + rev = "b28d968eb345542b430a717dc72a88abf10d0b95"; + sha256 = "0i8k55xx2wyzfz635nbjqma505sn03l75mq6lgbknzwhv1xbx39s"; + }; + } + { + goPackagePath = "golang.org/x/net"; + fetch = { + type = "git"; + url = "https://go.googlesource.com/net"; + rev = "146acd28ed5894421fb5aac80ca93bc1b1f46f87"; + sha256 = "0d177474z85nvxz8ch6y9wjqz288844wwx8q9za3x2njnk4jbgxj"; + }; + } + { + goPackagePath = "golang.org/x/text"; + fetch = { + type = "git"; + url = "https://go.googlesource.com/text"; + rev = "4d1c5fb19474adfe9562c9847ba425e7da817e81"; + sha256 = "1y4rf9cmjyf8r56khr1sz0chbq1v0ynaj63i2z1mq6k6h6ww45da"; + }; + } + { + goPackagePath = "google.golang.org/genproto"; + fetch = { + type = "git"; + url = "https://github.com/google/go-genproto"; + rev = "af9cb2a35e7f169ec875002c1829c9b315cddc04"; + sha256 = "1942rw8h7zhbzvxn1rqn8z265sl2i14hm0z4hbfbc93slmml7p7n"; + }; + } + { + goPackagePath = "google.golang.org/grpc"; + fetch = { + type = "git"; + url = "https://github.com/grpc/grpc-go"; + rev = "c195587d96d5ae30321b96a1e2e175fea09e9fda"; + sha256 = "1av4hgaqk0hgji8ycdkgganh6bqajk2ygm4ifrmyzbm1hzwi3gg7"; + }; + } +] diff --git a/pkgs/tools/networking/grpcurl/deps-linux.nix b/pkgs/tools/networking/grpcurl/deps-linux.nix new file mode 100644 index 0000000000000000000000000000000000000000..e5e775e50fea11c5df6178775f108da6451f1399 --- /dev/null +++ b/pkgs/tools/networking/grpcurl/deps-linux.nix @@ -0,0 +1,66 @@ +# This file was generated by https://github.com/kamilchm/go2nix v1.2.1 +[ + { + goPackagePath = "github.com/golang/protobuf"; + fetch = { + type = "git"; + url = "https://github.com/golang/protobuf"; + rev = "ddf22928ea3c56eb4292a0adbbf5001b1e8e7d0d"; + sha256 = "16awkanx2rgxzhwi9vpm4i8jmmsw10gb104ncwfinvb6a9nzm28l"; + }; + } + { + goPackagePath = "github.com/jhump/protoreflect"; + fetch = { + type = "git"; + url = "https://github.com/jhump/protoreflect"; + rev = "b28d968eb345542b430a717dc72a88abf10d0b95"; + sha256 = "0i8k55xx2wyzfz635nbjqma505sn03l75mq6lgbknzwhv1xbx39s"; + }; + } + { + goPackagePath = "golang.org/x/net"; + fetch = { + type = "git"; + url = "https://go.googlesource.com/net"; + rev = "49bb7cea24b1df9410e1712aa6433dae904ff66a"; + sha256 = "111q4qm3hcjvzvyv9y5rz8ydnyg48rckcygxqy6gv63q618wz6gn"; + }; + } + { + goPackagePath = "golang.org/x/sys"; + fetch = { + type = "git"; + url = "https://go.googlesource.com/sys"; + rev = "4497e2df6f9e69048a54498c7affbbec3294ad47"; + sha256 = "028qmbfmy84pl7wmjgvrv1x7x7nzv3qr9w7vcnrcparr43k7415s"; + }; + } + { + goPackagePath = "golang.org/x/text"; + fetch = { + type = "git"; + url = "https://go.googlesource.com/text"; + rev = "4d1c5fb19474adfe9562c9847ba425e7da817e81"; + sha256 = "1y4rf9cmjyf8r56khr1sz0chbq1v0ynaj63i2z1mq6k6h6ww45da"; + }; + } + { + goPackagePath = "google.golang.org/genproto"; + fetch = { + type = "git"; + url = "https://github.com/google/go-genproto"; + rev = "af9cb2a35e7f169ec875002c1829c9b315cddc04"; + sha256 = "1942rw8h7zhbzvxn1rqn8z265sl2i14hm0z4hbfbc93slmml7p7n"; + }; + } + { + goPackagePath = "google.golang.org/grpc"; + fetch = { + type = "git"; + url = "https://github.com/grpc/grpc-go"; + rev = "c195587d96d5ae30321b96a1e2e175fea09e9fda"; + sha256 = "1av4hgaqk0hgji8ycdkgganh6bqajk2ygm4ifrmyzbm1hzwi3gg7"; + }; + } +] diff --git a/pkgs/tools/networking/httpie/default.nix b/pkgs/tools/networking/httpie/default.nix index ef50c0ce0847ab361b58a1e1845ef3d9e69f6273..10f57532df104030edd123a32095e5e0d8071066 100644 --- a/pkgs/tools/networking/httpie/default.nix +++ b/pkgs/tools/networking/httpie/default.nix @@ -1,11 +1,11 @@ { stdenv, fetchurl, pythonPackages }: pythonPackages.buildPythonApplication rec { - name = "httpie-0.9.9"; + name = "httpie-1.0.0"; src = fetchurl { url = "mirror://pypi/h/httpie/${name}.tar.gz"; - sha256 = "1jsgfkyzzizgfy1b0aicb4cp34d5pwskz9c4a8kf4rq3lrpjw87i"; + sha256 = "09cs2n76318i34vms9pdnbds53pnp1m11gwn444j49na5qnk8l0n"; }; propagatedBuildInputs = with pythonPackages; [ pygments requests ]; diff --git a/pkgs/tools/networking/i2pd/default.nix b/pkgs/tools/networking/i2pd/default.nix index 9ecf6963787265e3d348fdd87150c35e16a86911..6e4cf45686b6d6a9341c93aeb90f85b03dff3b1c 100644 --- a/pkgs/tools/networking/i2pd/default.nix +++ b/pkgs/tools/networking/i2pd/default.nix @@ -11,13 +11,13 @@ stdenv.mkDerivation rec { name = pname + "-" + version; pname = "i2pd"; - version = "2.21.0"; + version = "2.22.0"; src = fetchFromGitHub { owner = "PurpleI2P"; repo = pname; rev = version; - sha256 = "02zsig63cambwm479ckw4kl1dk00g1q2sbzsvn9vy1xpjy928n7v"; + sha256 = "1c4y5y6a9kssi9qmsyqz5hw29ya1s0i21fklnz48n08b7f4f9vlz"; }; buildInputs = with stdenv.lib; [ boost zlib openssl ] diff --git a/pkgs/tools/networking/ip2unix/default.nix b/pkgs/tools/networking/ip2unix/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..1fa1531d1837fc2ddde70e157b33ddfbee79b671 --- /dev/null +++ b/pkgs/tools/networking/ip2unix/default.nix @@ -0,0 +1,45 @@ +{ stdenv, fetchFromGitHub, meson, ninja, pkgconfig, libyamlcpp, systemd +, python3Packages, asciidoc, libxslt, docbook_xml_dtd_45, docbook_xsl +, libxml2, docbook5 +}: + +stdenv.mkDerivation rec { + name = "ip2unix-${version}"; + version = "1.2.0"; + + src = fetchFromGitHub { + owner = "nixcloud"; + repo = "ip2unix"; + rev = "v${version}"; + sha256 = "0blrhcmska06ydkl15jjgblygkwrimdnbaq3hhifgmffymfk2652"; + }; + + nativeBuildInputs = [ + meson ninja pkgconfig asciidoc libxslt.bin docbook_xml_dtd_45 docbook_xsl + libxml2.bin docbook5 python3Packages.pytest python3Packages.pytest-timeout + ]; + + buildInputs = [ libyamlcpp systemd ]; + + doCheck = true; + + doInstallCheck = true; + installCheckPhase = '' + found=0 + for man in "$out/share/man/man1"/ip2unix.1*; do + test -s "$man" && found=1 + done + if [ $found -ne 1 ]; then + echo "ERROR: Manual page hasn't been generated." >&2 + exit 1 + fi + ''; + + meta = { + homepage = https://github.com/nixcloud/ip2unix; + description = "Turn IP sockets into Unix domain sockets"; + platforms = stdenv.lib.platforms.linux; + license = stdenv.lib.licenses.lgpl3; + maintainers = [ stdenv.lib.maintainers.aszlig ]; + }; +} diff --git a/pkgs/tools/networking/netselect/default.nix b/pkgs/tools/networking/netselect/default.nix index ef00d8602feb373d1ca052df2c1d6ade50b43fef..702fee86922e2983f68ed88c0b0dd36f8b9ef599 100644 --- a/pkgs/tools/networking/netselect/default.nix +++ b/pkgs/tools/networking/netselect/default.nix @@ -1,19 +1,28 @@ -{stdenv, fetchurl}: +{ stdenv, fetchFromGitHub }: -stdenv.mkDerivation { - name = "netselect-0.3"; +stdenv.mkDerivation rec { + name = "netselect-${version}"; + version = "0.4"; - src = fetchurl { - url = http://alumnit.ca/~apenwarr/netselect/netselect-0.3.tar.gz; - sha256 = "0y69z59vylj9x9nk5jqn6ihx7dkzg09gpv2w1q1rs8fmi4jr90gy"; + src = fetchFromGitHub { + owner = "apenwarr"; + repo = "netselect"; + rev = name; + sha256 = "1zncyvjzllrjbdvz7c50d1xjyhs9mwqfy92ndpfc5b3mxqslw4kx"; }; - preBuild = '' - makeFlagsArray=(PREFIX=$out) - substituteInPlace Makefile \ - --replace "-o root" "" \ - --replace "-g root" "" \ - --replace "4755" "0755" + postPatch = '' + substituteInPlace netselect-apt \ + --replace "/usr/bin/" "" + ''; + + makeFlags = [ "PREFIX=$(out)" ]; + + installPhase = '' + runHook preInstall + install -Dm555 -t $out/bin netselect netselect-apt + install -Dm444 -t $out/share/man/man1 *.1 + runHook postInstall ''; meta = with stdenv.lib; { diff --git a/pkgs/tools/networking/ntp/seccomp.patch b/pkgs/tools/networking/ntp/seccomp.patch index 872bf8e7fcc272f7470fc144f86be21662254c01..c75536dac7fb58cca5a3f5851add876e960ed7c7 100644 --- a/pkgs/tools/networking/ntp/seccomp.patch +++ b/pkgs/tools/networking/ntp/seccomp.patch @@ -1,7 +1,18 @@ -diff -urN ntp-4.2.8p10.orig/ntpd/ntpd.c ntp-4.2.8p10/ntpd/ntpd.c ---- ntp-4.2.8p10.orig/ntpd/ntpd.c 2017-04-02 20:21:17.371319663 +0200 -+++ ntp-4.2.8p10/ntpd/ntpd.c 2017-04-02 21:26:02.766178723 +0200 -@@ -1157,10 +1157,12 @@ +From 881e427f3236046466bdb8235edf86e6dfa34391 Mon Sep 17 00:00:00 2001 +From: Michael Bishop +Date: Mon, 11 Jun 2018 08:30:48 -0300 +Subject: [PATCH] fix the seccomp filter to include a few previously missed + syscalls + +--- + ntpd/ntpd.c | 8 ++++++++ + 1 file changed, 8 insertions(+) + +diff --git a/ntpd/ntpd.c b/ntpd/ntpd.c +index 2c7f02ec5..4c59dc2ba 100644 +--- a/ntpd/ntpd.c ++++ b/ntpd/ntpd.c +@@ -1140,10 +1140,12 @@ int scmp_sc[] = { SCMP_SYS(close), SCMP_SYS(connect), SCMP_SYS(exit_group), @@ -14,15 +25,16 @@ diff -urN ntp-4.2.8p10.orig/ntpd/ntpd.c ntp-4.2.8p10/ntpd/ntpd.c SCMP_SYS(getsockname), SCMP_SYS(ioctl), SCMP_SYS(lseek), -@@ -1179,6 +1181,7 @@ +@@ -1162,6 +1164,8 @@ int scmp_sc[] = { SCMP_SYS(sendto), SCMP_SYS(setitimer), SCMP_SYS(setsid), -+ SCMP_SYS(setsockopt), ++ SCMP_SYS(setsockopt), ++ SCMP_SYS(openat), SCMP_SYS(socket), SCMP_SYS(stat), SCMP_SYS(time), -@@ -1195,9 +1198,11 @@ +@@ -1178,9 +1182,11 @@ int scmp_sc[] = { SCMP_SYS(clock_settime), SCMP_SYS(close), SCMP_SYS(exit_group), @@ -34,12 +46,12 @@ diff -urN ntp-4.2.8p10.orig/ntpd/ntpd.c ntp-4.2.8p10/ntpd/ntpd.c SCMP_SYS(madvise), SCMP_SYS(mmap), SCMP_SYS(mmap2), -@@ -1211,6 +1216,8 @@ +@@ -1194,6 +1200,8 @@ int scmp_sc[] = { SCMP_SYS(select), SCMP_SYS(setitimer), SCMP_SYS(setsid), -+ SCMP_SYS(setsockopt), -+ SCMP_SYS(openat), ++ SCMP_SYS(setsockopt), ++ SCMP_SYS(openat), SCMP_SYS(sigprocmask), SCMP_SYS(sigreturn), SCMP_SYS(socketcall), diff --git a/pkgs/tools/networking/shadowsocks-libev/default.nix b/pkgs/tools/networking/shadowsocks-libev/default.nix index 09fa69dd37c4e50f8a3ebe252f670fe685ce255b..27c4590f88b86c2aed4dab7541bc4241e62d7088 100644 --- a/pkgs/tools/networking/shadowsocks-libev/default.nix +++ b/pkgs/tools/networking/shadowsocks-libev/default.nix @@ -16,27 +16,15 @@ stdenv.mkDerivation rec { }; buildInputs = [ libsodium mbedtls libev c-ares pcre ]; - nativeBuildInputs = [ cmake asciidoc xmlto docbook_xml_dtd_45 docbook_xsl libxslt ]; + nativeBuildInputs = [ cmake asciidoc xmlto docbook_xml_dtd_45 + docbook_xsl libxslt ]; - cmakeFlags = [ "-DWITH_STATIC=OFF" ]; + cmakeFlags = [ "-DWITH_STATIC=OFF" "-DCMAKE_BUILD_WITH_INSTALL_NAME_DIR=ON" ]; postInstall = '' cp lib/* $out/lib chmod +x $out/bin/* mv $out/pkgconfig $out/lib - - ${stdenv.lib.optionalString stdenv.isDarwin '' - install_name_tool -change libcork.dylib $out/lib/libcork.dylib $out/lib/libipset.dylib - install_name_tool -change libbloom.dylib $out/lib/libbloom.dylib $out/lib/libipset.dylib - - for exe in $out/bin/*; do - install_name_tool -change libmbedtls.dylib ${mbedtls}/lib/libmbedtls.dylib $exe - install_name_tool -change libmbedcrypto.dylib ${mbedtls}/lib/libmbedcrypto.dylib $exe - install_name_tool -change libcork.dylib $out/lib/libcork.dylib $exe - install_name_tool -change libipset.dylib $out/lib/libipset.dylib $exe - install_name_tool -change libbloom.dylib $out/lib/libbloom.dylib $exe - done - ''} ''; meta = with stdenv.lib; { diff --git a/pkgs/tools/networking/spoofer/default.nix b/pkgs/tools/networking/spoofer/default.nix index ad03e9266c687c225a401b5c611e832c13f04252..1043007e1dd2c73c8a3e313cac05123e86d68252 100644 --- a/pkgs/tools/networking/spoofer/default.nix +++ b/pkgs/tools/networking/spoofer/default.nix @@ -6,12 +6,12 @@ in stdenv.mkDerivation rec { pname = "spoofer"; - version = "1.3.3"; + version = "1.4.0"; name = "${pname}-${version}"; src = fetchurl { url = "https://www.caida.org/projects/spoofer/downloads/${name}.tar.gz"; - sha256 = "0zpqn3jj14grwggzl235smm93d2lm5r5cr6z6wydw1045m5rlvrp"; + sha256 = "0d745w7cy83hw7j950dah4h5qzclcibj16dik2gpsjnw1zq63cna"; }; nativeBuildInputs = [ pkgconfig ]; diff --git a/pkgs/tools/networking/swaks/default.nix b/pkgs/tools/networking/swaks/default.nix index be807e307715623df7ca49136fa89d1df95ef9d2..8daf034d4bdd1bcf2cb9ed62d65f37132f403035 100644 --- a/pkgs/tools/networking/swaks/default.nix +++ b/pkgs/tools/networking/swaks/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { name = "swaks-${version}"; - version = "20170101.0"; + version = "20181104.0"; src = fetchurl { url = "https://www.jetmore.org/john/code/swaks/files/${name}.tar.gz"; - sha256 = "0pli4mlhasnqqxmmxalwyg3x7n2vhcbgsnp2xgddamjavv82vrl4"; + sha256 = "0n1yd27xcyb1ylp5gln3yv5gzi9r377hjy1j32367kgb3247ygq2"; }; buildInputs = [ perl makeWrapper ]; diff --git a/pkgs/tools/networking/tgt/default.nix b/pkgs/tools/networking/tgt/default.nix index ce9ed7ef53a1c50e0ac0ac79f9b74b2c531c7bbc..b2ef684f58950601fd92ca512c628d659c9ff19a 100644 --- a/pkgs/tools/networking/tgt/default.nix +++ b/pkgs/tools/networking/tgt/default.nix @@ -2,7 +2,7 @@ , docbook_xsl }: let - version = "1.0.73"; + version = "1.0.74"; in stdenv.mkDerivation rec { name = "tgt-${version}"; @@ -10,7 +10,7 @@ in stdenv.mkDerivation rec { owner = "fujita"; repo = "tgt"; rev = "v${version}"; - sha256 = "0alrdrklh5wq8x4xbp30zwnxkp0brx1mjkbp70dhaz0zbzvyydr0"; + sha256 = "1k146w49dda77fd8frmc0nyr07ca1wh5vcw59fjid6knaj9vgck5"; }; buildInputs = [ libxslt systemd libaio docbook_xsl ]; diff --git a/pkgs/tools/package-management/cargo-tree/default.nix b/pkgs/tools/package-management/cargo-tree/default.nix index 90f2ad71fc21d2481692154b13f3cf00b26d3a55..e509ab2f59bbb8ddf7fff11f53738502e66bbd8f 100644 --- a/pkgs/tools/package-management/cargo-tree/default.nix +++ b/pkgs/tools/package-management/cargo-tree/default.nix @@ -1,17 +1,17 @@ { stdenv, lib, rustPlatform, fetchFromGitHub, pkgconfig, cmake, curl, libiconv, darwin }: rustPlatform.buildRustPackage rec { name = "cargo-tree-${version}"; - version = "0.20.0"; + version = "0.22.0"; src = fetchFromGitHub { owner = "sfackler"; repo = "cargo-tree"; rev = "v${version}"; - sha256 = "197kbr7q7aqzv5l8xilz60m50rbkmfwfswyd6ka7w83j5bi88jw3"; + sha256 = "1knxykw1pbqxs4inijd3y797kf1zp4ansmnbwfqxyjlkgss0spdq"; }; - cargoSha256 = "1v84cj42ch49jrigrkivg99hzxa79jii8s3fddjk23hi1xx1c35y"; + cargoSha256 = "0w1psr7j5r8ng3njkjiva738czlhnf9drprisbc8szkfhzc3rgaw"; nativeBuildInputs = [ pkgconfig cmake ]; buildInputs = [ curl ] ++ lib.optionals stdenv.isDarwin [ libiconv darwin.apple_sdk.frameworks.Security ]; diff --git a/pkgs/tools/package-management/nix-du/default.nix b/pkgs/tools/package-management/nix-du/default.nix index 24672296506dda878ae56449c06781b12c9b433f..59ec714261b153fadfc85f268864ceeadb882a3f 100644 --- a/pkgs/tools/package-management/nix-du/default.nix +++ b/pkgs/tools/package-management/nix-du/default.nix @@ -1,25 +1,23 @@ -{ stdenv, fetchFromGitHub, rustPlatform, nix, boost, graphviz }: +{ stdenv, fetchFromGitHub, rustPlatform, nix, boost, graphviz, darwin }: rustPlatform.buildRustPackage rec { name = "nix-du-${version}"; - version = "0.2.0"; + version = "0.3.0"; src = fetchFromGitHub { owner = "symphorien"; repo = "nix-du"; rev = "v${version}"; - sha256 = "1n1qgqjbwbb59xnzgz0dn8h8pckh6yq3crh0w6x2sngijwh678x8"; + sha256 = "1x6qpivxbn94034jfdxb97xi97fhcdv2z7llq2ccfc80mgd0gz8l"; }; - cargoSha256 = "1qidbrkdpf4kliyvy2040qi3a67s8mr2r46rjcblr1v2gar0xgs0"; + cargoSha256 = "0sva4lnhccm6ly7pa6m99s3fqkmh1dzv7r2727nsg2f55prd4kxc"; - # switch to true when nix includes https://github.com/NixOS/nix/pull/2223 and - # https://github.com/NixOS/nix/pull/2234 - doCheck = false; + doCheck = true; checkInputs = [ graphviz ]; buildInputs = [ boost nix - ]; + ] ++ stdenv.lib.optional stdenv.isDarwin darwin.apple_sdk.frameworks.Security; meta = with stdenv.lib; { description = "A tool to determine which gc-roots take space in your nix store"; diff --git a/pkgs/tools/package-management/nix/default.nix b/pkgs/tools/package-management/nix/default.nix index 030571d6a911cc1f95f1446cbce62dc8cce3bdfc..ea03570bb3e5a0d0af404e64aa3a60f43a7126c7 100644 --- a/pkgs/tools/package-management/nix/default.nix +++ b/pkgs/tools/package-management/nix/default.nix @@ -160,12 +160,12 @@ in rec { nixUnstable = (lib.lowPrio (common rec { name = "nix-2.2${suffix}"; - suffix = "pre6520_18b4c53f"; + suffix = "pre6526_9f99d624"; src = fetchFromGitHub { owner = "NixOS"; repo = "nix"; - rev = "18b4c53f71dfc626f5f5ffa0282afd1b9faad6a4"; - sha256 = "1hn7bjrf6x7024nald7nk1c9m8fyddkzhazl7pwf6ssmiv12apxh"; + rev = "9f99d62480cf7c58c0a110b180f2096b7d25adab"; + sha256 = "0fkmx7gmgg0yij9kw52fkyvib88hj1jsj90vbpy13ccfwknh1044"; }; fromGit = true; })) // { perl-bindings = perl-bindings { diff --git a/pkgs/tools/security/acsccid/default.nix b/pkgs/tools/security/acsccid/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..246a2c5d9917e329d3e337f061231c436edfb99a --- /dev/null +++ b/pkgs/tools/security/acsccid/default.nix @@ -0,0 +1,54 @@ +{ stdenv, fetchFromGitHub, autoconf, automake, libtool, gettext, flex, perl, pkgconfig, pcsclite, libusb }: + +stdenv.mkDerivation rec { + version = "1.1.6"; + name = "acsccid-${version}"; + + src = fetchFromGitHub { + owner = "acshk"; + repo = "acsccid"; + rev = "26bc84c738d12701e6a7289ed578671d71cbf3cb"; + sha256 = "09k7hvcay092wkyf0hjsvimg1h4qzss1nk7m5yanlib4ldhw5g5c"; + }; + + doCheck = true; + + nativeBuildInputs = [ pkgconfig ]; + buildInputs = [ pcsclite libusb autoconf automake libtool gettext flex perl ]; + + postPatch = '' + sed -e s_/bin/echo_echo_g -i src/Makefile.am + patchShebangs src/convert_version.pl + patchShebangs src/create_Info_plist.pl + ''; + + preConfigure = '' + libtoolize --force + aclocal + autoheader + automake --force-missing --add-missing + autoconf + configureFlags="$configureFlags --enable-usbdropdir=$out/pcsc/drivers" + ''; + + meta = with stdenv.lib; { + description = "acsccid is a PC/SC driver for Linux/Mac OS X and it supports ACS CCID smart card readers."; + longDescription = '' + acsccid is a PC/SC driver for Linux/Mac OS X and it supports ACS CCID smart card + readers. This library provides a PC/SC IFD handler implementation and + communicates with the readers through the PC/SC Lite resource manager (pcscd). + + acsccid is based on ccid. See CCID free software driver for more + information: + https://ccid.apdu.fr/ + + It can be enabled in /etc/nixos/configuration.nix by adding: + services.pcscd.enable = true; + services.pcscd.plugins = [ pkgs.acsccid ]; + ''; + homepage = src.meta.homepage; + license = licenses.lgpl2Plus; + maintainers = with maintainers; [ roberth ]; + platforms = with platforms; unix; + }; +} diff --git a/pkgs/tools/security/chrome-token-signing/default.nix b/pkgs/tools/security/chrome-token-signing/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..b9e42bb6fa74452606034e939e43057cc85e3692 --- /dev/null +++ b/pkgs/tools/security/chrome-token-signing/default.nix @@ -0,0 +1,27 @@ +{ stdenv, fetchFromGitHub, qmake, pcsclite, pkgconfig }: + +stdenv.mkDerivation rec { + name = "chrome-token-signing-${version}"; + version = "1.0.7"; + + src = fetchFromGitHub { + owner = "open-eid"; + repo = "chrome-token-signing"; + rev = "v${version}"; + sha256 = "1icbr5gyf7qqk1qjgcrf6921ws84j5h8zrpzw5mirq4582l5gsav"; + }; + + buildInputs = [ qmake pcsclite pkgconfig ]; + dontUseQmakeConfigure = true; + + patchPhase = '' + substituteInPlace host-linux/ee.ria.esteid.json --replace /usr $out + ''; + + installPhase = '' + install -D -t $out/bin host-linux/chrome-token-signing + # TODO: wire these up + install -D -t $out/etc/chromium/native-messaging-hosts host-linux/ee.ria.esteid.json + install -D -t $out/lib/mozilla/native-messaging-hosts host-linux/ff/ee.ria.esteid.json + ''; +} diff --git a/pkgs/tools/security/eid-mw/default.nix b/pkgs/tools/security/eid-mw/default.nix index cc61cce463ce035eb49e749e9219caf7ab5d4c5d..637d2af9ae315d6405ec959e5b08a50a4de76e79 100644 --- a/pkgs/tools/security/eid-mw/default.nix +++ b/pkgs/tools/security/eid-mw/default.nix @@ -7,10 +7,10 @@ stdenv.mkDerivation rec { name = "eid-mw-${version}"; - version = "4.4.8"; + version = "4.4.9"; src = fetchFromGitHub { - sha256 = "0khpkpfnbin46aqnb9xkhh5d89lvsshgp4kqpdgk95l73lx8kdqp"; + sha256 = "019cfxgffl6z6ilz1w6b531dr8pi63ikflxmkc95glh7cxsaylax"; rev = "v${version}"; repo = "eid-mw"; owner = "Fedict"; diff --git a/pkgs/tools/security/keybase/default.nix b/pkgs/tools/security/keybase/default.nix index 555244bc38cd5f9e96c455326d476f2d3fcc2582..720c382ebd675c09db5d6b645d0543a02a78b2c5 100644 --- a/pkgs/tools/security/keybase/default.nix +++ b/pkgs/tools/security/keybase/default.nix @@ -1,6 +1,7 @@ -{ stdenv, lib, buildGoPackage, fetchFromGitHub -, AVFoundation ? null, AudioToolbox ? null, ImageIO ? null, CoreMedia ? null -, Foundation ? null, CoreGraphics ? null, MediaToolbox ? null }: +{ stdenv, lib, buildGoPackage, fetchFromGitHub, cf-private +, AVFoundation, AudioToolbox, ImageIO, CoreMedia +, Foundation, CoreGraphics, MediaToolbox +}: buildGoPackage rec { name = "keybase-${version}"; @@ -18,7 +19,11 @@ buildGoPackage rec { sha256 = "1sw6v3vf544vp8grw8p287cx078mr9v0v1wffcj6f9p9shlwj7ic"; }; - buildInputs = lib.optionals stdenv.isDarwin [ AVFoundation AudioToolbox ImageIO CoreMedia Foundation CoreGraphics MediaToolbox ]; + buildInputs = lib.optionals stdenv.isDarwin [ + AVFoundation AudioToolbox ImageIO CoreMedia Foundation CoreGraphics MediaToolbox + # Needed for OBJC_CLASS_$_NSData symbols. + cf-private + ]; buildFlags = [ "-tags production" ]; meta = with stdenv.lib; { diff --git a/pkgs/tools/security/lynis/default.nix b/pkgs/tools/security/lynis/default.nix index ad345afb5fccee92bd438169e7a1b292400a7d88..46c2e6f03b0d107e22edbc01b54db0ef1ee4d3d6 100644 --- a/pkgs/tools/security/lynis/default.nix +++ b/pkgs/tools/security/lynis/default.nix @@ -1,29 +1,26 @@ -{ stdenv, makeWrapper, fetchFromGitHub, gawk, perl }: +{ stdenv, makeWrapper, fetchFromGitHub, gawk }: stdenv.mkDerivation rec { pname = "lynis"; - version = "2.6.9"; + version = "2.7.0"; name = "${pname}-${version}"; src = fetchFromGitHub { owner = "CISOfy"; repo = "${pname}"; rev = "${version}"; - sha256 = "125p5vpc2ksn0nab8y4ckfgx13rlv3w95amgighiqkh15ccji5kq"; + sha256 = "0rzc0y8lk22bymf56249jzmllki2lh0rz5in4lkrc5fkmp29c2wv"; }; - nativeBuildInputs = [ makeWrapper perl ]; + nativeBuildInputs = [ makeWrapper ]; postPatch = '' grep -rl '/usr/local/lynis' ./ | xargs sed -i "s@/usr/local/lynis@$out/share/lynis@g" - # Don't use predefined binary paths. See https://github.com/CISOfy/lynis/issues/468 - perl -i -p0e 's/BIN_PATHS="[^"]*"/BIN_PATHS=\$\(echo \$PATH\ | sed "s\/:\/ \/g")/sm;' include/consts ''; installPhase = '' - mkdir -p $out/share/lynis + install -d $out/bin $out/share/lynis/plugins cp -r include db default.prf $out/share/lynis/ - mkdir -p $out/bin cp -a lynis $out/bin wrapProgram "$out/bin/lynis" --prefix PATH : ${stdenv.lib.makeBinPath [ gawk ]} ''; diff --git a/pkgs/tools/security/metasploit/Gemfile.lock b/pkgs/tools/security/metasploit/Gemfile.lock index d15df5e56c2b890157efacd7d8fd0718c3b266cd..a84e3d08f43888f6638dd122b7f9a77244714e15 100644 --- a/pkgs/tools/security/metasploit/Gemfile.lock +++ b/pkgs/tools/security/metasploit/Gemfile.lock @@ -187,7 +187,7 @@ GEM arel (>= 4.0.1) pg_array_parser (~> 0.0.9) public_suffix (2.0.5) - rack (1.6.8) + rack (1.6.11) rack-test (0.6.3) rack (>= 1.0) rails-deprecated_sanitizer (1.0.3) @@ -292,4 +292,4 @@ DEPENDENCIES metasploit-framework! BUNDLED WITH - 1.15.0 + 1.16.4 diff --git a/pkgs/tools/security/metasploit/gemset.nix b/pkgs/tools/security/metasploit/gemset.nix index 4262e64efb04ca948385817daecf45ecd4cee503..938817cb64f6b18b6d997f653770494d9bd2b407 100644 --- a/pkgs/tools/security/metasploit/gemset.nix +++ b/pkgs/tools/security/metasploit/gemset.nix @@ -1,5 +1,6 @@ { actionpack = { + dependencies = ["actionview" "activesupport" "rack" "rack-test" "rails-dom-testing" "rails-html-sanitizer"]; source = { remotes = ["https://rubygems.org"]; sha256 = "1kgrq74gp2czzxr0f2sqrc98llz03lgq498300z2z5n4khgznwc4"; @@ -8,6 +9,7 @@ version = "4.2.9"; }; actionview = { + dependencies = ["activesupport" "builder" "erubis" "rails-dom-testing" "rails-html-sanitizer"]; source = { remotes = ["https://rubygems.org"]; sha256 = "04kgp4gmahw31miz8xdq1pns14qmvvzd14fgfv7fg9klkw3bxyyp"; @@ -16,6 +18,7 @@ version = "4.2.9"; }; activemodel = { + dependencies = ["activesupport" "builder"]; source = { remotes = ["https://rubygems.org"]; sha256 = "1qxmivny0ka5s3iyap08sn9bp2bd9wrhqp2njfw26hr9wsjk5kfv"; @@ -24,6 +27,7 @@ version = "4.2.9"; }; activerecord = { + dependencies = ["activemodel" "activesupport" "arel"]; source = { remotes = ["https://rubygems.org"]; sha256 = "18i790dfhi4ndypd1pj9pv08knpxr2sayvvwfq7axj5jfwgpmrqb"; @@ -32,6 +36,7 @@ version = "4.2.9"; }; activesupport = { + dependencies = ["i18n" "minitest" "thread_safe" "tzinfo"]; source = { remotes = ["https://rubygems.org"]; sha256 = "1d0a362p3m2m2kljichar2pwq0qm4vblc3njy1rdzm09ckzd45sp"; @@ -40,6 +45,7 @@ version = "4.2.9"; }; addressable = { + dependencies = ["public_suffix"]; source = { remotes = ["https://rubygems.org"]; sha256 = "1i8q32a4gr0zghxylpyy7jfqwxvwrivsxflg9mks6kx92frh75mh"; @@ -64,6 +70,7 @@ version = "6.0.4"; }; arel-helpers = { + dependencies = ["activerecord"]; source = { remotes = ["https://rubygems.org"]; sha256 = "1sx4qbzhld3a99175p2krz3hv1npc42rv3sd8x4awzkgplg3zy9c"; @@ -144,6 +151,7 @@ version = "2.7.0"; }; faraday = { + dependencies = ["multipart-post"]; source = { remotes = ["https://rubygems.org"]; sha256 = "1gyqsj7vlqynwvivf9485zwmcj04v1z7gq362z0b8zw2zf4ag0hw"; @@ -184,6 +192,7 @@ version = "0.8.6"; }; jsobfu = { + dependencies = ["rkelly-remix"]; source = { remotes = ["https://rubygems.org"]; sha256 = "1hchns89cfj0gggm2zbr7ghb630imxm2x2d21ffx2jlasn9xbkyk"; @@ -200,6 +209,7 @@ version = "2.1.0"; }; loofah = { + dependencies = ["nokogiri"]; source = { remotes = ["https://rubygems.org"]; sha256 = "109ps521p0sr3kgc460d58b4pr1z4mqggan2jbsf0aajy9s6xis8"; @@ -216,6 +226,7 @@ version = "1.0.3"; }; metasploit-concern = { + dependencies = ["activemodel" "activesupport" "railties"]; source = { remotes = ["https://rubygems.org"]; sha256 = "0v9lm225fhzhnbjcc0vwb38ybikxwzlv8116rrrkndzs8qy79297"; @@ -224,6 +235,7 @@ version = "2.0.5"; }; metasploit-credential = { + dependencies = ["metasploit-concern" "metasploit-model" "metasploit_data_models" "pg" "railties" "rex-socket" "rubyntlm" "rubyzip"]; source = { remotes = ["https://rubygems.org"]; sha256 = "1flahrcl5hf4bncqs40mry6pkffvmir85kqzkad22x3dh6crw50i"; @@ -232,6 +244,7 @@ version = "2.0.12"; }; metasploit-framework = { + dependencies = ["actionpack" "activerecord" "activesupport" "backports" "bcrypt" "bcrypt_pbkdf" "bit-struct" "dnsruby" "filesize" "jsobfu" "json" "metasm" "metasploit-concern" "metasploit-credential" "metasploit-model" "metasploit-payloads" "metasploit_data_models" "metasploit_payloads-mettle" "msgpack" "nessus_rest" "net-ssh" "network_interface" "nexpose" "nokogiri" "octokit" "openssl-ccm" "openvas-omp" "packetfu" "patch_finder" "pcaprub" "pdf-reader" "pg" "railties" "rb-readline" "rbnacl" "rbnacl-libsodium" "recog" "redcarpet" "rex-arch" "rex-bin_tools" "rex-core" "rex-encoder" "rex-exploitation" "rex-java" "rex-mime" "rex-nop" "rex-ole" "rex-powershell" "rex-random_identifier" "rex-registry" "rex-rop_builder" "rex-socket" "rex-sslscan" "rex-struct2" "rex-text" "rex-zip" "robots" "ruby_smb" "rubyntlm" "rubyzip" "sqlite3" "sshkey" "tzinfo" "tzinfo-data" "windows_error" "xdr" "xmlrpc"]; source = { fetchSubmodules = false; rev = "dbec1c2d2ae4bd77276cbfb3c6ee2902048b9453"; @@ -242,6 +255,7 @@ version = "4.16.1"; }; metasploit-model = { + dependencies = ["activemodel" "activesupport" "railties"]; source = { remotes = ["https://rubygems.org"]; sha256 = "05pnai1cv00xw87rrz38dz4s3ss45s90290d0knsy1mq6rp8yvmw"; @@ -258,6 +272,7 @@ version = "1.3.1"; }; metasploit_data_models = { + dependencies = ["activerecord" "activesupport" "arel-helpers" "metasploit-concern" "metasploit-model" "pg" "postgres_ext" "railties" "recog"]; source = { remotes = ["https://rubygems.org"]; sha256 = "0j3ijxn6n3ack9572a74cwknijymy41c8rx34njyhg25lx4hbvah"; @@ -338,6 +353,7 @@ version = "6.1.1"; }; nokogiri = { + dependencies = ["mini_portile2"]; source = { remotes = ["https://rubygems.org"]; sha256 = "1nffsyx1xjg6v5n9rrbi8y1arrcx2i5f21cp6clgh9iwiqkr7rnn"; @@ -346,6 +362,7 @@ version = "1.8.0"; }; octokit = { + dependencies = ["sawyer"]; source = { remotes = ["https://rubygems.org"]; sha256 = "0h6cm7bi0y7ysjgwws3paaipqdld6c0m0niazrjahhpz88qqq1g4"; @@ -370,6 +387,7 @@ version = "0.0.4"; }; packetfu = { + dependencies = ["pcaprub"]; source = { remotes = ["https://rubygems.org"]; sha256 = "16ppq9wfxq4x2hss61l5brs3s6fmi8gb50mnp1nnnzb1asq4g8ll"; @@ -394,6 +412,7 @@ version = "0.12.4"; }; pdf-reader = { + dependencies = ["Ascii85" "afm" "hashery" "ruby-rc4" "ttfunk"]; source = { remotes = ["https://rubygems.org"]; sha256 = "0nlammdpjy3padmzxhsql7mw31jyqp88n6bdffiarv5kzl4s3y7p"; @@ -418,6 +437,7 @@ version = "0.0.9"; }; postgres_ext = { + dependencies = ["activerecord" "arel" "pg_array_parser"]; source = { remotes = ["https://rubygems.org"]; sha256 = "1lbp1qf5s1addhznm7d4bzks9adh7jpilgcsr8k7mbd0a1ailcgc"; @@ -436,12 +456,13 @@ rack = { source = { remotes = ["https://rubygems.org"]; - sha256 = "19m7aixb2ri7p1n0iqaqx8ldi97xdhvbxijbyrrcdcl6fv5prqza"; + sha256 = "1g9926ln2lw12lfxm4ylq1h6nl0rafl10za3xvjzc87qvnqic87f"; type = "gem"; }; - version = "1.6.8"; + version = "1.6.11"; }; rack-test = { + dependencies = ["rack"]; source = { remotes = ["https://rubygems.org"]; sha256 = "0h6x5jq24makgv2fq5qqgjlrk74dxfy62jif9blk43llw8ib2q7z"; @@ -450,6 +471,7 @@ version = "0.6.3"; }; rails-deprecated_sanitizer = { + dependencies = ["activesupport"]; source = { remotes = ["https://rubygems.org"]; sha256 = "0qxymchzdxww8bjsxj05kbf86hsmrjx40r41ksj0xsixr2gmhbbj"; @@ -458,6 +480,7 @@ version = "1.0.3"; }; rails-dom-testing = { + dependencies = ["activesupport" "nokogiri" "rails-deprecated_sanitizer"]; source = { remotes = ["https://rubygems.org"]; sha256 = "1ny7mbjxhq20rzg4pivvyvk14irmc7cn20kxfk3vc0z2r2c49p8r"; @@ -466,6 +489,7 @@ version = "1.0.8"; }; rails-html-sanitizer = { + dependencies = ["loofah"]; source = { remotes = ["https://rubygems.org"]; sha256 = "138fd86kv073zqfx0xifm646w6bgw2lr8snk16lknrrfrss8xnm7"; @@ -474,6 +498,7 @@ version = "1.0.3"; }; railties = { + dependencies = ["actionpack" "activesupport" "rake" "thor"]; source = { remotes = ["https://rubygems.org"]; sha256 = "1g5jnk1zllm2fr06lixq7gv8l2cwqc99akv7886gz6lshijpfyxd"; @@ -498,6 +523,7 @@ version = "0.5.5"; }; rbnacl = { + dependencies = ["ffi"]; source = { remotes = ["https://rubygems.org"]; sha256 = "08dkigw8wdx53hviw1zqrs7rcrzqcwh9jd3dvwr72013z9fmyp48"; @@ -506,6 +532,7 @@ version = "4.0.2"; }; rbnacl-libsodium = { + dependencies = ["rbnacl"]; source = { remotes = ["https://rubygems.org"]; sha256 = "1323fli41m01af13xz5xvabsjnz09si1b9l4qd2p802kq0dr61gd"; @@ -514,6 +541,7 @@ version = "1.0.13"; }; recog = { + dependencies = ["nokogiri"]; source = { remotes = ["https://rubygems.org"]; sha256 = "0h023ykrrra74bpbibkyg083kafaswvraw4naw9p1ghcjzn9ggj3"; @@ -530,6 +558,7 @@ version = "3.4.0"; }; rex-arch = { + dependencies = ["rex-text"]; source = { remotes = ["https://rubygems.org"]; sha256 = "1izzalmjwdyib8y0xlgys8qb60di6xyjk485ylgh14p47wkyc6yp"; @@ -538,6 +567,7 @@ version = "0.1.11"; }; rex-bin_tools = { + dependencies = ["metasm" "rex-arch" "rex-core" "rex-struct2" "rex-text"]; source = { remotes = ["https://rubygems.org"]; sha256 = "01hi1cjr68adp47nxbjfprvn0r3b72r4ib82x9j33bf2pny6nvaw"; @@ -554,6 +584,7 @@ version = "0.1.12"; }; rex-encoder = { + dependencies = ["metasm" "rex-arch" "rex-text"]; source = { remotes = ["https://rubygems.org"]; sha256 = "1zm5jdxgyyp8pkfqwin34izpxdrmglx6vmk20ifnvcsm55c9m70z"; @@ -562,6 +593,7 @@ version = "0.1.4"; }; rex-exploitation = { + dependencies = ["jsobfu" "metasm" "rex-arch" "rex-encoder" "rex-text"]; source = { remotes = ["https://rubygems.org"]; sha256 = "0gbj28jqaaldpk4qzysgcl6m0wcqx3gcldarqdk55p5z9zasrk19"; @@ -578,6 +610,7 @@ version = "0.1.5"; }; rex-mime = { + dependencies = ["rex-text"]; source = { remotes = ["https://rubygems.org"]; sha256 = "15a14kz429h7pn81ysa6av3qijxjmxagjff6dyss5v394fxzxf4a"; @@ -586,6 +619,7 @@ version = "0.1.5"; }; rex-nop = { + dependencies = ["rex-arch"]; source = { remotes = ["https://rubygems.org"]; sha256 = "0aigf9qsqsmiraa6zvfy1a7cyvf7zc3iyhzxi6fjv5sb8f64d6ny"; @@ -594,6 +628,7 @@ version = "0.1.1"; }; rex-ole = { + dependencies = ["rex-text"]; source = { remotes = ["https://rubygems.org"]; sha256 = "1pnzbqfnvbs0vc0z0ryszk3fxhgxrjd6gzwqa937rhlphwp5jpww"; @@ -602,6 +637,7 @@ version = "0.1.6"; }; rex-powershell = { + dependencies = ["rex-random_identifier" "rex-text"]; source = { remotes = ["https://rubygems.org"]; sha256 = "0nl60fdd1rlckk95d3s3y873w84vb0sgwvwxdzv414qxz8icpjnm"; @@ -610,6 +646,7 @@ version = "0.1.72"; }; rex-random_identifier = { + dependencies = ["rex-text"]; source = { remotes = ["https://rubygems.org"]; sha256 = "0cksrljaw61mdjvbmj9vqqhd8nra7jv466w5nim47n73rj72jc19"; @@ -626,6 +663,7 @@ version = "0.1.3"; }; rex-rop_builder = { + dependencies = ["metasm" "rex-core" "rex-text"]; source = { remotes = ["https://rubygems.org"]; sha256 = "0xjd3d6wnbq4ym0d0m268md8fb16f2hbwrahvxnl14q63fj9i3wy"; @@ -634,6 +672,7 @@ version = "0.1.3"; }; rex-socket = { + dependencies = ["rex-core"]; source = { remotes = ["https://rubygems.org"]; sha256 = "0bkr64qrfy2mcv6cpp2z2rn9npgn9s0yyagzjh7kawbm80ldwf2h"; @@ -642,6 +681,7 @@ version = "0.1.8"; }; rex-sslscan = { + dependencies = ["rex-core" "rex-socket" "rex-text"]; source = { remotes = ["https://rubygems.org"]; sha256 = "06gbx45q653ajcx099p0yxdqqxazfznbrqshd4nwiwg1p498lmyx"; @@ -666,6 +706,7 @@ version = "0.2.15"; }; rex-zip = { + dependencies = ["rex-text"]; source = { remotes = ["https://rubygems.org"]; sha256 = "1mbfryyhcw47i7jb8cs8vilbyqgyiyjkfl1ngl6wdbf7d87dwdw7"; @@ -698,6 +739,7 @@ version = "0.1.5"; }; ruby_smb = { + dependencies = ["bindata" "rubyntlm" "windows_error"]; source = { remotes = ["https://rubygems.org"]; sha256 = "1jby5wlppxhc2jlqldic05aqd5l57171lsxqv86702grk665n612"; @@ -722,6 +764,7 @@ version = "1.2.1"; }; sawyer = { + dependencies = ["addressable" "faraday"]; source = { remotes = ["https://rubygems.org"]; sha256 = "0sv1463r7bqzvx4drqdmd36m7rrv6sf1v3c6vswpnq3k6vdw2dvd"; @@ -770,6 +813,7 @@ version = "1.5.1"; }; tzinfo = { + dependencies = ["thread_safe"]; source = { remotes = ["https://rubygems.org"]; sha256 = "05r81lk7q7275rdq7xipfm0yxgqyd2ggh73xpc98ypngcclqcscl"; @@ -778,6 +822,7 @@ version = "1.2.3"; }; tzinfo-data = { + dependencies = ["tzinfo"]; source = { remotes = ["https://rubygems.org"]; sha256 = "1n83rmy476d4qmzq74qx0j7lbcpskbvrj1bmy3np4d5pydyw2yky"; @@ -794,6 +839,7 @@ version = "0.1.2"; }; xdr = { + dependencies = ["activemodel" "activesupport"]; source = { remotes = ["https://rubygems.org"]; sha256 = "0c5cp1k4ij3xq1q6fb0f6xv5b65wy18y7bhwvsdx8wd0zyg3x96m"; @@ -809,4 +855,4 @@ }; version = "0.3.0"; }; -} +} \ No newline at end of file diff --git a/pkgs/tools/security/pcsclite/default.nix b/pkgs/tools/security/pcsclite/default.nix index 495b6ee48ea705bd0a5c1d4e0e6df4f260f3d7aa..95f9bf16ebacdd265c7f9eb99e89168590b7370d 100644 --- a/pkgs/tools/security/pcsclite/default.nix +++ b/pkgs/tools/security/pcsclite/default.nix @@ -3,13 +3,13 @@ stdenv.mkDerivation rec { name = "pcsclite-${version}"; - version = "1.8.23"; + version = "1.8.24"; outputs = [ "bin" "out" "dev" "doc" "man" ]; src = fetchurl { url = "https://pcsclite.apdu.fr/files/pcsc-lite-${version}.tar.bz2"; - sha256 = "1jc9ws5ra6v3plwraqixin0w0wfxj64drahrbkyrrwzghqjjc9ss"; + sha256 = "0s3mv6csbi9303vvis0hilm71xsmi6cqkbh2kiipdisydbx6865q"; }; patches = [ ./no-dropdir-literals.patch ]; diff --git a/pkgs/tools/security/pinentry/mac.nix b/pkgs/tools/security/pinentry/mac.nix index 4acdd6cb897e4e7a1bd01eed6093fe8e618f2f04..8168aa94b3d28bc5af81812b6e777e5bc6b36c09 100644 --- a/pkgs/tools/security/pinentry/mac.nix +++ b/pkgs/tools/security/pinentry/mac.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchFromGitHub, xcbuildHook, libiconv, Cocoa, ncurses }: +{ stdenv, fetchFromGitHub, xcbuildHook, libiconv, Cocoa, ncurses, cf-private }: stdenv.mkDerivation rec { name = "pinentry-mac-0.9.4"; @@ -11,7 +11,12 @@ stdenv.mkDerivation rec { }; nativeBuildInputs = [ xcbuildHook ]; - buildInputs = [ libiconv Cocoa ncurses ]; + + buildInputs = [ + libiconv Cocoa ncurses + # Needed for OBJC_CLASS_$_NSArray symbols. + cf-private + ]; installPhase = '' mkdir -p $out/Applications diff --git a/pkgs/tools/security/qdigidoc/default.nix b/pkgs/tools/security/qdigidoc/default.nix index 398f88ccfb6b2dc235cb781cc22e1bb6954ef522..17bbf982255b65aa17de001eb2b944e6aa5818aa 100644 --- a/pkgs/tools/security/qdigidoc/default.nix +++ b/pkgs/tools/security/qdigidoc/default.nix @@ -1,14 +1,14 @@ { stdenv, fetchgit, fetchurl, cmake, darkhttpd, gettext, makeWrapper, pkgconfig -, libdigidocpp, opensc, openldap, openssl, pcsclite, qtbase, qttranslations }: +, libdigidocpp, opensc, openldap, openssl, pcsclite, qtbase, qttranslations, qtsvg }: stdenv.mkDerivation rec { name = "qdigidoc-${version}"; - version = "3.13.6"; + version = "4.1.0"; src = fetchgit { - url = "https://github.com/open-eid/qdigidoc"; + url = "https://github.com/open-eid/DigiDoc4-Client"; rev = "v${version}"; - sha256 = "1qq9fgvkc7fi37ly3kgxksrm4m5rxk9k5s5cig8z0cszsfk6h9lx"; + sha256 = "1iry36h3pfnw2gqjnfhv53i2svybxj8jf18qh486djyai84hjr4d"; fetchSubmodules = true; }; @@ -24,11 +24,6 @@ stdenv.mkDerivation rec { --replace $\{TSL_URL} file://${tsl} ''; - patches = [ - # https://github.com/open-eid/qdigidoc/pull/163 - ./qt511.patch - ]; - buildInputs = [ libdigidocpp opensc @@ -36,11 +31,12 @@ stdenv.mkDerivation rec { openssl pcsclite qtbase + qtsvg qttranslations ]; postInstall = '' - wrapProgram $out/bin/qdigidocclient \ + wrapProgram $out/bin/qdigidoc4 \ --prefix LD_LIBRARY_PATH : ${opensc}/lib/pkcs11/ ''; diff --git a/pkgs/tools/security/qesteidutil/default.nix b/pkgs/tools/security/qesteidutil/default.nix index 20135895d766dfb31f11d054a00c583f5f1fa448..0f9502a7ac97016a6db5f785b414c32323aa74b7 100644 --- a/pkgs/tools/security/qesteidutil/default.nix +++ b/pkgs/tools/security/qesteidutil/default.nix @@ -4,8 +4,7 @@ }: stdenv.mkDerivation rec { - - version = "3.12.10"; + version = "2018-08-21"; name = "qesteidutil-${version}"; src = fetchFromGitHub { @@ -13,19 +12,11 @@ stdenv.mkDerivation rec { repo = "qesteidutil"; # TODO: Switch back to this after next release. #rev = "v${version}"; - # We require the remove breakpad stuff - rev = "efdfe4c5521f68f206569e71e292a664bb9f46aa"; - sha256 = "0zly83sdqsf9lxnfw4ir2a9vmmfba181rhsrz61ga2zzpm2wf0f0"; + rev = "3bb65ef345aaa0d589b37a5d0d6f5772e95b0cd7"; + sha256 = "13xsw5gh4svp9a5nxcqv72mymivr7w1cyjbv2l6yf96m45bsd9x4"; fetchSubmodules = true; }; - patches = [ - (fetchpatch { - url = https://github.com/open-eid/qesteidutil/commit/868e8245f2481e29e1154e168ac92d32e93a5425.patch; - sha256 = "0pwrkd8inf0qaf7lcchmj558k6z34ah672zcb722aa5ybbif0lkn"; - }) - ]; - nativeBuildInputs = [ pkgconfig ]; buildInputs = [ cmake ccid qttools pcsclite qttranslations hicolor-icon-theme @@ -36,6 +27,6 @@ stdenv.mkDerivation rec { homepage = http://www.id.ee/; license = licenses.lgpl2; platforms = platforms.linux; - maintainers = [ maintainers.jagajaga ]; + maintainers = with maintainers; [ jagajaga domenkozar ]; }; } diff --git a/pkgs/tools/security/saml2aws/default.nix b/pkgs/tools/security/saml2aws/default.nix index 047706cd8a68dbbe4d7244cdbfc4f1fb6c926cf2..e90517f1581b32ed6ce6fa168aee6261af1dbce0 100644 --- a/pkgs/tools/security/saml2aws/default.nix +++ b/pkgs/tools/security/saml2aws/default.nix @@ -2,7 +2,7 @@ buildGoPackage rec { name = "saml2aws-${version}"; - version = "2.6.1"; + version = "2.10.0"; goPackagePath = "github.com/versent/saml2aws"; goDeps = ./deps.nix; @@ -15,7 +15,7 @@ buildGoPackage rec { rev = "v${version}"; owner = "Versent"; repo = "saml2aws"; - sha256 = "0sg5qm1gyrisna247lmxfgpa22y6rnz9vd6yg92kxlcwr4ji8l1j"; + sha256 = "00m8x57fgry601w5f9dxnxdqbbqjiv7c0rsx47iv9qsp0w7l50c5"; }; meta = with stdenv.lib; { diff --git a/pkgs/tools/security/tor/default.nix b/pkgs/tools/security/tor/default.nix index d7344884951c6406c889cd2b6c14c3c4ff7b189a..d43b8598c18b3033c22c93b9c0fbfc092b7a0b94 100644 --- a/pkgs/tools/security/tor/default.nix +++ b/pkgs/tools/security/tor/default.nix @@ -14,11 +14,11 @@ }: stdenv.mkDerivation rec { - name = "tor-0.3.4.8"; + name = "tor-0.3.4.9"; src = fetchurl { url = "https://dist.torproject.org/${name}.tar.gz"; - sha256 = "08qhzcmzxp5xr2l5721vagksqnnbrzzzy5hmz5y9r8lrq2r4qsl2"; + sha256 = "0jhnvnp08hsfrzgsvg5xnfxyaw3nzgg9h24cwbwnz6iby20i05qs"; }; outputs = [ "out" "geoip" ]; diff --git a/pkgs/tools/system/acpica-tools/default.nix b/pkgs/tools/system/acpica-tools/default.nix index 54303d0c177d4435bca34598c61c4dc8e242d09c..5bc8c7d945bd8875cc0894c8248cdeec259b8b2f 100644 --- a/pkgs/tools/system/acpica-tools/default.nix +++ b/pkgs/tools/system/acpica-tools/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { name = "acpica-tools-${version}"; - version = "20180927"; + version = "20181031"; src = fetchurl { url = "https://acpica.org/sites/acpica/files/acpica-unix-${version}.tar.gz"; - sha256 = "1c9d505mw1wyga65y4nmiz55gs357z97wnycx77yvjwvi08qsh6w"; + sha256 = "1zz1lfrl1rihs47a0cirdp32p53297kjm0l27b4kvibb5b7pa3h9"; }; NIX_CFLAGS_COMPILE = "-O3"; diff --git a/pkgs/tools/system/facter/default.nix b/pkgs/tools/system/facter/default.nix index ba21fabe4350c94941c274ee62d6677f4bcc0111..dd2340668c49b2643560046c2f7da4151d8e83ee 100644 --- a/pkgs/tools/system/facter/default.nix +++ b/pkgs/tools/system/facter/default.nix @@ -2,10 +2,10 @@ stdenv.mkDerivation rec { name = "facter-${version}"; - version = "3.12.0"; + version = "3.12.1"; src = fetchFromGitHub { - sha256 = "1bg044j3dv6kcksy3cyda650ara8s4awdf665k10gaaxa0gwn0jj"; + sha256 = "08mhsf9q9mhjfdzn8qkm12i1k5l7fnm6hqx6rqr8ni5iprl73b3d"; rev = version; repo = "facter"; owner = "puppetlabs"; diff --git a/pkgs/tools/system/fio/default.nix b/pkgs/tools/system/fio/default.nix index c0210127d9f2a6a7209824537bc6b23be27e6249..8e9fb6da540070ccadab8e843f97429347c1e2d4 100644 --- a/pkgs/tools/system/fio/default.nix +++ b/pkgs/tools/system/fio/default.nix @@ -4,13 +4,13 @@ stdenv.mkDerivation rec { name = "fio-${version}"; - version = "3.11"; + version = "3.12"; src = fetchFromGitHub { owner = "axboe"; repo = "fio"; rev = "fio-${version}"; - sha256 = "0k5hja50qmz6qwm8h7z00zdgxhf1vg1g168jinqzn1521fihvlvz"; + sha256 = "18awz03mdzdbja1n9nm6jyvv7ic2dabh6c7ip5vwpam8c6mj4yjq"; }; buildInputs = [ python zlib ] diff --git a/pkgs/tools/system/rsyslog/default.nix b/pkgs/tools/system/rsyslog/default.nix index fa2d40949e53149bf9bd6872d9c21db39091fffb..91923e7e59b5d5b81d4b6e6155ae9df15e0570ba 100644 --- a/pkgs/tools/system/rsyslog/default.nix +++ b/pkgs/tools/system/rsyslog/default.nix @@ -11,11 +11,11 @@ let mkFlag = cond: name: if cond then "--enable-${name}" else "--disable-${name}"; in stdenv.mkDerivation rec { - name = "rsyslog-8.38.0"; + name = "rsyslog-8.39.0"; src = fetchurl { url = "https://www.rsyslog.com/files/download/rsyslog/${name}.tar.gz"; - sha256 = "0b52pcamj2g27zdg0szzk03kigm9lanj0v0w80alwy5fpk9qwcjd"; + sha256 = "1d3ac448b8gj58vg7n99ffv2rvpnhhin1ni5vyby73aksvz9c7y7"; }; #patches = [ ./fix-gnutls-detection.patch ]; diff --git a/pkgs/tools/text/aha/default.nix b/pkgs/tools/text/aha/default.nix index 89319ac492f452d76ec40972c96877a32ea73bdd..f53a649cd7710c019ceeb6ef41613030feba4131 100644 --- a/pkgs/tools/text/aha/default.nix +++ b/pkgs/tools/text/aha/default.nix @@ -2,10 +2,10 @@ stdenv.mkDerivation rec { name = "aha-${version}"; - version = "0.4.10.6"; + version = "0.5"; src = fetchFromGitHub { - sha256 = "18mz3f5aqw4vbdrxf8wblqm6nca73ppq9hb2z2ppw6k0557i71kz"; + sha256 = "0byml4rmpiaalwx69jcixl3yvpvwmwiss1jzgsqwshilb2p4qnmz"; rev = version; repo = "aha"; owner = "theZiz"; diff --git a/pkgs/tools/text/ansifilter/default.nix b/pkgs/tools/text/ansifilter/default.nix index 3e9511fefdaacefa99ddaa345cf941b07f665d3a..54591bf24424d611280440bea736eb66111d5b31 100644 --- a/pkgs/tools/text/ansifilter/default.nix +++ b/pkgs/tools/text/ansifilter/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { name = "ansifilter-${version}"; - version = "2.10"; + version = "2.12"; src = fetchurl { url = "http://www.andre-simon.de/zip/ansifilter-${version}.tar.bz2"; - sha256 = "0gzfxfpic47cs2kqrbvaw166ji62c5nq5cjhh3ngpm2fkm1wzli3"; + sha256 = "0ssvc51x90l1s9pxdxaw6ba01dcalrp0b5glrnh1j43i2pskc750"; }; diff --git a/pkgs/tools/text/bcat/Gemfile.lock b/pkgs/tools/text/bcat/Gemfile.lock index c39ebc279109ee098d3566c55d6ca813b6b387cf..fa67e6e28dbd2a72923810912f03862f2859deb3 100644 --- a/pkgs/tools/text/bcat/Gemfile.lock +++ b/pkgs/tools/text/bcat/Gemfile.lock @@ -3,7 +3,7 @@ GEM specs: bcat (0.6.2) rack (~> 1.0) - rack (1.6.8) + rack (1.6.11) PLATFORMS ruby @@ -12,4 +12,4 @@ DEPENDENCIES bcat BUNDLED WITH - 1.15.4 + 1.16.4 diff --git a/pkgs/tools/text/bcat/gemset.nix b/pkgs/tools/text/bcat/gemset.nix index 0654e35399d95552aeeca03a2b202a802c999df6..744c0e6e107b000f727ee77086f7d14e8cee36d4 100644 --- a/pkgs/tools/text/bcat/gemset.nix +++ b/pkgs/tools/text/bcat/gemset.nix @@ -11,9 +11,9 @@ rack = { source = { remotes = ["http://rubygems.org"]; - sha256 = "19m7aixb2ri7p1n0iqaqx8ldi97xdhvbxijbyrrcdcl6fv5prqza"; + sha256 = "1g9926ln2lw12lfxm4ylq1h6nl0rafl10za3xvjzc87qvnqic87f"; type = "gem"; }; - version = "1.6.8"; + version = "1.6.11"; }; } \ No newline at end of file diff --git a/pkgs/tools/text/fanficfare/default.nix b/pkgs/tools/text/fanficfare/default.nix index 1dec03e985b31ed9ea9d2f8f371feaf8f67ee2ba..3315d435afbbcd00619b589ed7cb2d46f07362a4 100644 --- a/pkgs/tools/text/fanficfare/default.nix +++ b/pkgs/tools/text/fanficfare/default.nix @@ -1,13 +1,13 @@ { stdenv, fetchurl, python27Packages }: python27Packages.buildPythonApplication rec { - version = "3.0.0"; + version = "3.1.1"; name = "fanficfare-${version}"; nameprefix = ""; src = fetchurl { url = "https://github.com/JimmXinu/FanFicFare/archive/v${version}.tar.gz"; - sha256 = "0m8p1nn4621fspcas4g4k8y6fnnlzn7kxjxw2fapdrk3cz1pgi69"; + sha256 = "1wklii24vbvq2vi5pqgp3z4lazcplh2i7r2w4d8lkm6pzbw0s8px"; }; propagatedBuildInputs = with python27Packages; [ beautifulsoup4 chardet html5lib html2text ]; diff --git a/pkgs/tools/text/gnused/422.nix b/pkgs/tools/text/gnused/422.nix index 037c2f17a63ba19271adfb542905632c49ee9e54..16d4f20fe8e7ce6fe21d7142fd81ee25625aa321 100644 --- a/pkgs/tools/text/gnused/422.nix +++ b/pkgs/tools/text/gnused/422.nix @@ -8,6 +8,8 @@ stdenv.mkDerivation { sha256 = "f048d1838da284c8bc9753e4506b85a1e0cc1ea8999d36f6995bcb9460cddbd7"; }; + configureFlags = stdenv.lib.optional stdenv.hostPlatform.isMinGW "ac_cv_func__set_invalid_parameter_handler=no"; + outputs = [ "out" "info" ]; meta = { diff --git a/pkgs/tools/text/gnused/default.nix b/pkgs/tools/text/gnused/default.nix index af3db54e96d50dd027c93d243092c2f501bf4536..4bdddb8c50b74a2c5edee771ce4ff817c3e88f2c 100644 --- a/pkgs/tools/text/gnused/default.nix +++ b/pkgs/tools/text/gnused/default.nix @@ -32,7 +32,7 @@ stdenv.mkDerivation rec { license = stdenv.lib.licenses.gpl3Plus; - platforms = stdenv.lib.platforms.all; + platforms = stdenv.lib.platforms.unix; maintainers = [ ]; }; } diff --git a/pkgs/tools/text/gucci/default.nix b/pkgs/tools/text/gucci/default.nix new file mode 100644 index 0000000000000000000000000000000000000000..a04a2c65e7c35cb1d506bbb5c52c68a18c1fff7d --- /dev/null +++ b/pkgs/tools/text/gucci/default.nix @@ -0,0 +1,30 @@ +{ stdenv, buildGoPackage, fetchFromGitHub }: + +buildGoPackage rec { + name = "gucci-${version}"; + version = "0.1.0"; + + goPackagePath = "github.com/noqcks/gucci"; + + src = fetchFromGitHub { + owner = "noqcks"; + repo = "gucci"; + rev = version; + sha256 = "0ksrmzb3iggc7gm51fl0jbb15d0gmpclslpkq2sl2xjzk29pkllq"; + }; + + goDeps = ./deps.nix; + + buildFlagsArray = '' + -ldflags=-X main.AppVersion=${version} + ''; + + meta = with stdenv.lib; { + description = "A simple CLI templating tool written in golang"; + homepage = https://github.com/noqcks/gucci; + license = licenses.mit; + maintainers = [ maintainers.braydenjw ]; + platforms = platforms.unix; + }; +} + diff --git a/pkgs/tools/text/gucci/deps.nix b/pkgs/tools/text/gucci/deps.nix new file mode 100644 index 0000000000000000000000000000000000000000..8e2cc5af3bf1039df19c8b478e78b54734b1ed42 --- /dev/null +++ b/pkgs/tools/text/gucci/deps.nix @@ -0,0 +1,30 @@ +[ + { + goPackagePath = "gopkg.in/yaml.v2"; + fetch = { + type = "git"; + url = "https://gopkg.in/yaml.v2"; + rev = "5420a8b6744d3b0345ab293f6fcba19c978f1183"; + sha256 = "0dwjrs2lp2gdlscs7bsrmyc5yf6mm4fvgw71bzr9mv2qrd2q73s1"; + }; + } + { + goPackagePath = "github.com/imdario/mergo"; + fetch = { + type = "git"; + url = "https://github.com/imdario/mergo"; + rev = "v0.3.6"; + sha256 = "1lbzy8p8wv439sqgf0n21q52flf2wbamp6qa1jkyv6an0nc952q7"; + }; + } + { + goPackagePath = "github.com/urfave/cli"; + fetch = { + type = "git"; + url = "https://github.com/urfave/cli"; + rev = "v1.20.0"; + sha256 = "0y6f4sbzkiiwrxbl15biivj8c7qwxnvm3zl2dd3mw4wzg4x10ygj"; + }; + } +] + diff --git a/pkgs/tools/text/hyx/default.nix b/pkgs/tools/text/hyx/default.nix index 1ba3534e3f8a6ef9b93b464d204a2bacf1f6ef1d..70745266fe55cc55fd925eddee8a36768c750fa5 100644 --- a/pkgs/tools/text/hyx/default.nix +++ b/pkgs/tools/text/hyx/default.nix @@ -1,13 +1,15 @@ { lib, stdenv, fetchurl }: stdenv.mkDerivation rec { - name = "hyx-0.1.4"; + name = "hyx-0.1.5"; src = fetchurl { url = "https://yx7.cc/code/hyx/${name}.tar.xz"; - sha256 = "049r610hyrrfa62vpiqyb3rh99bpy8cnqy4nd4sih01733cmdhyx"; + sha256 = "0gd8fbdyw12jwffa5dgcql4ry22xbdhqdds1qwzk1rkcrkgnc1mg"; }; + patches = [ ./no-wall-by-default.patch ]; + installPhase = '' install -vD hyx $out/bin/hyx ''; @@ -17,6 +19,6 @@ stdenv.mkDerivation rec { homepage = https://yx7.cc/code/; license = licenses.mit; maintainers = with maintainers; [ fpletz ]; - platforms = platforms.all; + platforms = platforms.linux; }; } diff --git a/pkgs/tools/text/hyx/no-wall-by-default.patch b/pkgs/tools/text/hyx/no-wall-by-default.patch new file mode 100644 index 0000000000000000000000000000000000000000..48ee20eff179d0c5251c22e9aa92a21a0043684a --- /dev/null +++ b/pkgs/tools/text/hyx/no-wall-by-default.patch @@ -0,0 +1,11 @@ +--- hyx-0.1.5.org/Makefile 2018-06-02 17:14:37.000000000 +0100 ++++ hyx-0.1.5/Makefile 2018-11-10 09:25:49.569961762 +0000 +@@ -1,7 +1,7 @@ + + all: CFLAGS ?= -O2 -Wl,-s \ + -Wl,-z,relro,-z,now -fpic -pie -D_FORTIFY_SOURCE=2 -fstack-protector-all +-all: CFLAGS += -std=c99 -pedantic -Wall -Wextra -DNDEBUG ++all: CFLAGS += -std=c99 -DNDEBUG + all: hyx + + debug: CFLAGS ?= -O0 -g \ diff --git a/pkgs/tools/typesetting/asciidoctor/Gemfile.lock b/pkgs/tools/typesetting/asciidoctor/Gemfile.lock index 04f9029e6e5a6f749b48c1b42a3c64b3164a27c5..59e8fd06ef2df63ae10e3e72a622ab0432d3c131 100644 --- a/pkgs/tools/typesetting/asciidoctor/Gemfile.lock +++ b/pkgs/tools/typesetting/asciidoctor/Gemfile.lock @@ -69,7 +69,7 @@ GEM public_suffix (3.0.3) pygments.rb (1.2.1) multi_json (>= 1.0.0) - rack (2.0.5) + rack (2.0.6) ruby-enum (0.7.2) i18n ruby-rc4 (0.1.5) @@ -103,4 +103,4 @@ DEPENDENCIES pygments.rb BUNDLED WITH - 1.14.6 + 1.16.4 diff --git a/pkgs/tools/typesetting/asciidoctor/gemset.nix b/pkgs/tools/typesetting/asciidoctor/gemset.nix index 8b960fa3d9305b251e2c4e9135827586308efdf6..034ab174e8a335efafb5abbc5d4a7c6744e0a562 100644 --- a/pkgs/tools/typesetting/asciidoctor/gemset.nix +++ b/pkgs/tools/typesetting/asciidoctor/gemset.nix @@ -307,14 +307,12 @@ version = "1.2.1"; }; rack = { - groups = ["default"]; - platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "158hbn7rlc3czp2vivvam44dv6vmzz16qrh5dbzhfxbfsgiyrqw1"; + sha256 = "1pcgv8dv4vkaczzlix8q3j68capwhk420cddzijwqgi2qb4lm1zm"; type = "gem"; }; - version = "2.0.5"; + version = "2.0.6"; }; ruby-enum = { dependencies = ["i18n"]; diff --git a/pkgs/tools/typesetting/pdf2djvu/default.nix b/pkgs/tools/typesetting/pdf2djvu/default.nix index 97dd885b7788d14c438a5286df45bf00b30eb253..fa582d4594cb24ee4fb84fa98a54d886df1f396d 100644 --- a/pkgs/tools/typesetting/pdf2djvu/default.nix +++ b/pkgs/tools/typesetting/pdf2djvu/default.nix @@ -1,12 +1,12 @@ { stdenv, fetchurl, pkgconfig, djvulibre, poppler, fontconfig, libjpeg }: stdenv.mkDerivation rec { - version = "0.9.10"; + version = "0.9.11"; name = "pdf2djvu-${version}"; src = fetchurl { url = "https://github.com/jwilk/pdf2djvu/releases/download/${version}/${name}.tar.xz"; - sha256 = "026vgg4v6wsq8j091yxg3xzh5953kqg5cyay87y7yidnzn39livn"; + sha256 = "1hscpm5lsqmiv1niwnq999wmcvj9wlajw8wd3diaaxcq207kvsvd"; }; nativeBuildInputs = [ pkgconfig ]; diff --git a/pkgs/tools/typesetting/rubber/default.nix b/pkgs/tools/typesetting/rubber/default.nix index bbcda05dc801f0a136cbccd65285388de8626d8c..92c1cc5269556e7d52b41441c9d62f3b13ebc6f4 100644 --- a/pkgs/tools/typesetting/rubber/default.nix +++ b/pkgs/tools/typesetting/rubber/default.nix @@ -1,12 +1,12 @@ -{ fetchurl, stdenv, python2Packages, texinfo }: +{ fetchurl, stdenv, python3Packages, texinfo }: -python2Packages.buildPythonApplication rec { +python3Packages.buildPythonApplication rec { name = "rubber-${version}"; - version = "1.4"; + version = "1.5.1"; src = fetchurl { url = "https://launchpad.net/rubber/trunk/${version}/+download/${name}.tar.gz"; - sha256 = "1d7hq19vpb3l31grldbxg8lx1qdd18f5f3gqw96q0lhf58agcjl2"; + sha256 = "178dmrp0mza5gqjiqgk6dqs0c10s0c517pk6k9pjbam86vf47a1p"; }; propagatedBuildInputs = [ texinfo ]; @@ -20,7 +20,7 @@ python2Packages.buildPythonApplication rec { # the check scripts forces python2. If we need to use python3 at some point, we should use # the correct python checkPhase = '' - sed -i 's|python=python2|python=${python2Packages.python.interpreter}|' tests/run.sh + sed -i 's|python=python3|python=${python3Packages.python.interpreter}|' tests/run.sh cd tests && ${stdenv.shell} run.sh ''; diff --git a/pkgs/tools/typesetting/scdoc/default.nix b/pkgs/tools/typesetting/scdoc/default.nix index 5789f51abd9c39eef735e0c45543240af108716c..a5bf2d261e1c82a6363011b547032599e3dcee65 100644 --- a/pkgs/tools/typesetting/scdoc/default.nix +++ b/pkgs/tools/typesetting/scdoc/default.nix @@ -9,6 +9,8 @@ stdenv.mkDerivation rec { sha256 = "0a9sxifzsbj24kjnpc0525i91ni2vkwizhgvwx1m9shvfkiisnc6"; }; + patches = [ ./use-source-date-epoch.patch ]; + postPatch = '' substituteInPlace Makefile \ --replace "-static" "" \ diff --git a/pkgs/tools/typesetting/scdoc/use-source-date-epoch.patch b/pkgs/tools/typesetting/scdoc/use-source-date-epoch.patch new file mode 100644 index 0000000000000000000000000000000000000000..5a2496d63583038877a5e0d2ba2a3c8c078295b8 --- /dev/null +++ b/pkgs/tools/typesetting/scdoc/use-source-date-epoch.patch @@ -0,0 +1,75 @@ +diff --git a/src/main.c b/src/main.c +index 14b08d2..e2cc33e 100644 +--- a/src/main.c ++++ b/src/main.c +@@ -3,6 +3,7 @@ + #include + #include + #include ++#define __USE_XOPEN + #include + #include + #include "string.h" +@@ -66,10 +67,17 @@ static void parse_preamble(struct parser *p) { + int section = -1; + uint32_t ch; + char date[256]; +- time_t now; +- time(&now); +- struct tm *now_tm = localtime(&now); +- strftime(date, sizeof(date), "%F", now_tm); ++ char *source_date_epoch = getenv("SOURCE_DATE_EPOCH"); ++ if (source_date_epoch != NULL) { ++ struct tm source_date_epoch_tm; ++ strptime(source_date_epoch, "%s", &source_date_epoch_tm); ++ strftime(date, sizeof(date), "%F", &source_date_epoch_tm); ++ } else { ++ time_t now; ++ time(&now); ++ struct tm *now_tm = localtime(&now); ++ strftime(date, sizeof(date), "%F", now_tm); ++ } + while ((ch = parser_getch(p)) != UTF8_INVALID) { + if ((ch < 0x80 && isalnum(ch)) || ch == '_' || ch == '-' || ch == '.') { + assert(str_append_ch(name, ch) != -1); +diff --git a/test/preamble b/test/preamble +index 03e2d0c..eeb734b 100755 +--- a/test/preamble ++++ b/test/preamble +@@ -38,31 +38,31 @@ EOF + end 0 + + begin "Writes the appropriate header" +-scdoc </dev/null ++scdoc </dev/null + test(8) + EOF + end 0 + + begin "Preserves dashes" +-scdoc </dev/null ++scdoc </dev/null + test-manual(8) + EOF + end 0 + + begin "Handles extra footer field" +-scdoc </dev/null ++scdoc </dev/null + test-manual(8) "Footer" + EOF + end 0 + + begin "Handles both extra fields" +-scdoc </dev/null ++scdoc </dev/null + test-manual(8) "Footer" "Header" + EOF + end 0 + + begin "Emits empty footer correctly" +-scdoc </dev/null ++scdoc </dev/null + test-manual(8) "" "Header" + EOF + end 0 diff --git a/pkgs/tools/typesetting/tex/texlive/combine.nix b/pkgs/tools/typesetting/tex/texlive/combine.nix index f76b71ced3cfeba4542aaf6d5e985148010bc990..ea29267481984443b00c43dc063c3a5236ffb4c2 100644 --- a/pkgs/tools/typesetting/tex/texlive/combine.nix +++ b/pkgs/tools/typesetting/tex/texlive/combine.nix @@ -218,8 +218,29 @@ in buildEnv { ln -sv "$(realpath $s)" "$out/bin/$tName" # wrapped below done ) + '' + + # A hacky way to provide repstopdf + # * Copy is done to have a correct "$0" so that epstopdf enables the restricted mode + # * ./bin/repstopdf needs to be a symlink to be processed by wrapBin + '' + if [[ -e ./bin/epstopdf ]]; then + cp $(realpath ./bin/epstopdf) ./share/texmf/scripts/repstopdf + ln -s "$out"/share/texmf/scripts/repstopdf ./bin/repstopdf + fi + '' + + # finish up the wrappers + '' rm "$out"/bin/*-sys wrapBin + '' + + # Perform a small test to verify that the restricted mode get enabled when + # needed (detected by checking if it disallows --gscmd) + '' + if [[ -e ./bin/epstopdf ]]; then + echo "Testing restricted mode for {,r}epstopdf" + ! (epstopdf --gscmd echo /dev/null 2>&1 || true) | grep forbidden + (repstopdf --gscmd echo /dev/null 2>&1 || true) | grep forbidden + fi '' + # TODO: a context trigger https://www.preining.info/blog/2015/06/debian-tex-live-2015-the-new-layout/ # http://wiki.contextgarden.net/ConTeXt_Standalone#Unix-like_platforms_.28Linux.2FMacOS_X.2FFreeBSD.2FSolaris.29 diff --git a/pkgs/tools/video/atomicparsley/default.nix b/pkgs/tools/video/atomicparsley/default.nix index 701850758bcb488c22d86b6095f74b296db938f3..74f4c562102ca04a2c91d28a8c8301efbee79526 100644 --- a/pkgs/tools/video/atomicparsley/default.nix +++ b/pkgs/tools/video/atomicparsley/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchhg, autoreconfHook, zlib, darwin }: +{ stdenv, fetchhg, autoreconfHook, zlib, cf-private, Cocoa }: stdenv.mkDerivation rec { name = "atomicparsley-${version}"; @@ -9,10 +9,14 @@ stdenv.mkDerivation rec { sha256 = "05n4kbn91ps52h3wi1qb2jwygjsc01qzx4lgkv5mvwl5i49rj8fm"; }; - buildInputs = - [ autoreconfHook - zlib - ] ++ stdenv.lib.optional stdenv.isDarwin darwin.apple_sdk.frameworks.Cocoa; + nativeBuildInputs = [ autoreconfHook ]; + + buildInputs = [ zlib ] + ++ stdenv.lib.optionals stdenv.isDarwin [ + Cocoa + # Needed for OBJC_CLASS_$_NSDictionary symbols. + cf-private + ]; installPhase = "install -D AtomicParsley $out/bin/AtomicParsley"; diff --git a/pkgs/tools/virtualization/google-compute-engine/default.nix b/pkgs/tools/virtualization/google-compute-engine/default.nix index c0b9954206ad307434a2d393d18c25b156742bae..5ddf15e09fad55e6e435a8e8f783e1f1fe4d4722 100644 --- a/pkgs/tools/virtualization/google-compute-engine/default.nix +++ b/pkgs/tools/virtualization/google-compute-engine/default.nix @@ -11,14 +11,14 @@ buildPythonApplication rec { name = "google-compute-engine-${version}"; - version = "20180905"; + version = "20181011"; namePrefix = ""; src = fetchFromGitHub { owner = "GoogleCloudPlatform"; repo = "compute-image-packages"; rev = version; - sha256 = "0095f000kgk2lc5p1y4080sbc0r7ly60a7i9id8hydfnkhqqz75n"; + sha256 = "1b3wyr412qh113xvs671dqnacidil61gisfvg79wbq6wrdwswkp8"; }; postPatch = '' diff --git a/pkgs/top-level/aliases.nix b/pkgs/top-level/aliases.nix index 8cd54c3a5bdfcc5a7c07ea4d5c643b282b3af27d..df143b059e7d26e28f274aedab952132e78449c3 100644 --- a/pkgs/top-level/aliases.nix +++ b/pkgs/top-level/aliases.nix @@ -59,6 +59,7 @@ mapAliases ({ cantarell_fonts = cantarell-fonts; # added 2018-03-03 checkbashism = checkbashisms; # added 2016-08-16 cifs_utils = cifs-utils; # added 2016-08 + ckb = ckb-next; # added 2018-10-21 clangAnalyzer = clang-analyzer; # added 2015-02-20 clawsMail = claws-mail; # added 2016-04-29 clutter_gtk = clutter-gtk; # added 2018-02-25 @@ -84,8 +85,8 @@ mapAliases ({ docbook5_xsl = docbook_xsl_ns; # added 2018-04-25 docbook_xml_xslt = docbook_xsl; # added 2018-04-25 double_conversion = double-conversion; # 2017-11-22 + docker_compose = docker-compose; # 2018-11-10 dwarf_fortress = dwarf-fortress; # added 2016-01-23 - emacs25Macport_25_1 = emacs25Macport; # added 2018-04-25 emacsMelpa = emacs25PackagesNg; # for backward compatibility emacsPackagesGen = emacsPackagesFor; # added 2018-08-18 emacsPackagesNgGen = emacsPackagesNgFor; # added 2018-08-18 @@ -163,6 +164,7 @@ mapAliases ({ libgumbo = gumbo; # added 2018-01-21 libintlOrEmpty = stdenv.lib.optional (!stdenv.isLinux || stdenv.hostPlatform.libc != "glibc") gettext; # added 2018-03-14 libjson_rpc_cpp = libjson-rpc-cpp; # added 2017-02-28 + liblapackWithoutAtlas = liblapack; # added 2018-11-05 libmysql = mysql.connector-c; # added # 2017-12-28, this was a misnomer refering to libmysqlclient librecad2 = librecad; # backwards compatibility alias, added 2015-10 libsysfs = sysfsutils; # added 2018-04-25 @@ -224,7 +226,13 @@ mapAliases ({ pidginwindowmerge = pidgin-window-merge; # added 2018-01-08 piwik = matomo; # added 2018-01-16 pltScheme = racket; # just to be sure + pmtools = acpica-tools; # added 2018-11-01 poppler_qt5 = libsForQt5.poppler; # added 2015-12-19 + postgresql93 = postgresql_9_3; + postgresql94 = postgresql_9_4; + postgresql95 = postgresql_9_5; + postgresql96 = postgresql_9_6; + postgresql100 = throw "deprecated 2018-10-21: use postgresql_10 instead"; procps-ng = procps; # added 2018-06-08 prometheus-statsd-bridge = prometheus-statsd-exporter; # added 2017-08-27 pulseaudioLight = pulseaudio; # added 2018-04-25 diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix index d1ab34eba6f228111bb9cf6870caedde91f74f99..a73bc7f77c948724a2d0547a08d82be1cd5ef961 100644 --- a/pkgs/top-level/all-packages.nix +++ b/pkgs/top-level/all-packages.nix @@ -71,6 +71,14 @@ with pkgs; common-updater-scripts = callPackage ../common-updater/scripts.nix { }; + ### Push NixOS tests inside the fixed point + + nixosTests = import ../../nixos/tests/all-tests.nix { + inherit pkgs; + system = stdenv.hostPlatform.system; + callTest = t: t.test; + }; + ### BUILD SUPPORT autoreconfHook = makeSetupHook @@ -122,15 +130,19 @@ with pkgs; inherit dhall-nix; }; + deadcode = callPackage ../development/tools/deadcode { }; + diffPlugins = (callPackage ../build-support/plugins.nix {}).diffPlugins; dieHook = makeSetupHook {} ../build-support/setup-hooks/die.sh; + archiver = callPackage ../applications/misc/archiver { }; + digitalbitbox = libsForQt5.callPackage ../applications/misc/digitalbitbox { }; dockerTools = callPackage ../build-support/docker { }; - docker_compose = pythonPackages.docker_compose; + docker-compose = python3Packages.callPackage ../applications/virtualization/docker-compose {}; docker-ls = callPackage ../tools/misc/docker-ls { }; @@ -497,6 +509,7 @@ with pkgs; alacritty = callPackage ../applications/misc/alacritty { inherit (xorg) libXcursor libXxf86vm libXi; + inherit (darwin) cf-private; inherit (darwin.apple_sdk.frameworks) AppKit CoreFoundation CoreGraphics CoreServices CoreText Foundation OpenGL; }; @@ -571,12 +584,17 @@ with pkgs; gsl = gsl_1; }; - atomicparsley = callPackage ../tools/video/atomicparsley { }; + atomicparsley = callPackage ../tools/video/atomicparsley { + inherit (darwin) cf-private; + inherit (darwin.apple_sdk.frameworks) Cocoa; + }; autoflake = callPackage ../development/tools/analysis/autoflake { }; avfs = callPackage ../tools/filesystems/avfs { }; + avldrums-lv2 = callPackage ../applications/audio/avldrums-lv2 { }; + aws-iam-authenticator = callPackage ../tools/security/aws-iam-authenticator {}; awscli = callPackage ../tools/admin/awscli { }; @@ -655,10 +673,14 @@ with pkgs; cconv = callPackage ../tools/text/cconv { }; + go-check = callPackage ../development/tools/check { }; + chkcrontab = callPackage ../tools/admin/chkcrontab { }; cozy = callPackage ../applications/audio/cozy-audiobooks { }; + diskus = callPackage ../tools/misc/diskus { }; + djmount = callPackage ../tools/filesystems/djmount { }; dgsh = callPackage ../shells/dgsh { }; @@ -696,12 +718,16 @@ with pkgs; gitter = callPackage ../applications/networking/instant-messengers/gitter { }; + gucci = callPackage ../tools/text/gucci { }; + grc = callPackage ../tools/misc/grc { }; green-pdfviewer = callPackage ../applications/misc/green-pdfviewer { SDL = SDL_sixel; }; + gremlin-console = callPackage ../applications/misc/gremlin-console { }; + gcsfuse = callPackage ../tools/filesystems/gcsfuse { }; glyr = callPackage ../tools/audio/glyr { }; @@ -770,6 +796,7 @@ with pkgs; androidenv = callPackage ../development/mobile/androidenv { pkgs_i686 = pkgsi686Linux; + licenseAccepted = (config.android_sdk.accept_license or false); }; inherit (androidenv) androidndk; @@ -798,6 +825,8 @@ with pkgs; }; aria = aria2; + asmfmt = callPackage ../development/tools/asmfmt { }; + aspcud = callPackage ../tools/misc/aspcud { }; at = callPackage ../tools/system/at { }; @@ -830,7 +859,10 @@ with pkgs; libssl = openssl; }; - axoloti = callPackage ../applications/audio/axoloti { }; + axoloti = callPackage ../applications/audio/axoloti { + gcc-arm-embedded = pkgsCross.arm-embedded.buildPackages.gcc; + binutils-arm-embedded = pkgsCross.arm-embedded.buildPackages.binutils; + }; dfu-util-axoloti = callPackage ../applications/audio/axoloti/dfu-util.nix { }; libusb1-axoloti = callPackage ../applications/audio/axoloti/libusb1.nix { inherit (darwin) libobjc; @@ -1026,10 +1058,10 @@ with pkgs; cue2pops = callPackage ../tools/cd-dvd/cue2pops { }; - cabal2nix = haskell.lib.overrideCabal haskellPackages.cabal2nix (drv: { + cabal2nix = haskell.lib.overrideCabal (haskell.lib.generateOptparseApplicativeCompletion "cabal2nix" haskellPackages.cabal2nix) (drv: { isLibrary = false; enableSharedExecutables = false; - executableToolDepends = [ makeWrapper ]; + executableToolDepends = (drv.executableToolDepends or []) ++ [ makeWrapper ]; postInstall = '' exe=$out/libexec/${drv.pname}-${drv.version}/${drv.pname} install -D $out/bin/${drv.pname} $exe @@ -1037,11 +1069,7 @@ with pkgs; makeWrapper $exe $out/bin/${drv.pname} \ --prefix PATH ":" "${nix}/bin" \ --prefix PATH ":" "${nix-prefetch-scripts}/bin" - mkdir -p $out/share/{bash-completion/completions,zsh/vendor-completions,fish/completions} - $exe --bash-completion-script $exe >$out/share/bash-completion/completions/${drv.pname} - $exe --zsh-completion-script $exe >$out/share/zsh/vendor-completions/_${drv.pname} - $exe --fish-completion-script $exe >$out/share/fish/completions/${drv.pname}.fish - ''; + '' + (drv.postInstall or ""); }); stack2nix = with haskell.lib; overrideCabal (justStaticExecutables haskellPackages.stack2nix) (drv: { @@ -1072,6 +1100,8 @@ with pkgs; catch = callPackage ../development/libraries/catch { }; + catch2 = callPackage ../development/libraries/catch2 { }; + catdoc = callPackage ../tools/text/catdoc { }; catdocx = callPackage ../tools/text/catdocx { }; @@ -1134,8 +1164,6 @@ with pkgs; consul = callPackage ../servers/consul { }; - consul-ui = callPackage ../servers/consul/ui.nix { }; - consul-alerts = callPackage ../servers/monitoring/consul-alerts { }; consul-template = callPackage ../tools/system/consul-template { }; @@ -1154,9 +1182,7 @@ with pkgs; clipster = callPackage ../tools/misc/clipster { }; - coprthr = callPackage ../development/libraries/coprthr { - flex = flex_2_5_35; - }; + coprthr = callPackage ../development/libraries/coprthr { }; cplex = callPackage ../applications/science/math/cplex { releasePath = config.cplex.releasePath or null; }; @@ -1167,6 +1193,7 @@ with pkgs; codec2 = callPackage ../development/libraries/codec2 { }; contacts = callPackage ../tools/misc/contacts { + inherit (darwin) cf-private; inherit (darwin.apple_sdk.frameworks) Foundation AddressBook; }; @@ -1176,6 +1203,8 @@ with pkgs; coursier = callPackage ../development/tools/coursier {}; + cppclean = callPackage ../development/tools/cppclean {}; + cri-tools = callPackage ../tools/virtualization/cri-tools {}; crip = callPackage ../applications/audio/crip { }; @@ -1307,6 +1336,8 @@ with pkgs; envsubst = callPackage ../tools/misc/envsubst { }; + errcheck = callPackage ../development/tools/errcheck { }; + eschalot = callPackage ../tools/security/eschalot { }; esptool = callPackage ../tools/misc/esptool { }; @@ -1512,6 +1543,7 @@ with pkgs; noteshrink = callPackage ../tools/misc/noteshrink { }; noti = callPackage ../tools/misc/noti { + inherit (darwin) cf-private; inherit (darwin.apple_sdk.frameworks) Cocoa; }; @@ -1529,6 +1561,8 @@ with pkgs; patdiff = callPackage ../tools/misc/patdiff { }; + pbpst = callPackage ../applications/misc/pbpst { }; + pbzx = callPackage ../tools/compression/pbzx { }; pev = callPackage ../development/tools/analysis/pev { }; @@ -1543,7 +1577,7 @@ with pkgs; parallel-rust = callPackage ../tools/misc/parallel-rust { }; - scour = callPackage ../tools/graphics/scour { }; + scour = with python3Packages; toPythonApplication scour; s2png = callPackage ../tools/graphics/s2png { }; @@ -1996,7 +2030,7 @@ with pkgs; checkbashisms = callPackage ../development/tools/misc/checkbashisms { }; - ckb = libsForQt5.callPackage ../tools/misc/ckb { }; + ckb-next = libsForQt5.callPackage ../tools/misc/ckb-next { }; clamav = callPackage ../tools/security/clamav { }; @@ -2058,8 +2092,12 @@ with pkgs; cudatoolkit_7 cudatoolkit_7_5 cudatoolkit_8 + cudatoolkit_9 cudatoolkit_9_0 - cudatoolkit_9; + cudatoolkit_9_1 + cudatoolkit_9_2 + cudatoolkit_10 + cudatoolkit_10_0; cudatoolkit = cudatoolkit_9; @@ -2069,7 +2107,11 @@ with pkgs; cudnn6_cudatoolkit_8 cudnn_cudatoolkit_8 cudnn_cudatoolkit_9 - cudnn_cudatoolkit_9_0; + cudnn_cudatoolkit_9_0 + cudnn_cudatoolkit_9_1 + cudnn_cudatoolkit_9_2 + cudnn_cudatoolkit_10 + cudnn_cudatoolkit_10_0; cudnn = cudnn_cudatoolkit_9; @@ -2335,6 +2377,8 @@ with pkgs; easyrsa2 = callPackage ../tools/networking/easyrsa/2.x.nix { }; + easysnap = callPackage ../tools/backup/easysnap { }; + ebook_tools = callPackage ../tools/text/ebook-tools { }; ecryptfs = callPackage ../tools/security/ecryptfs { }; @@ -2912,7 +2956,10 @@ with pkgs; gnu-pw-mgr = callPackage ../tools/security/gnu-pw-mgr { }; - gnused = callPackage ../tools/text/gnused { }; + gnused = if !stdenv.hostPlatform.isWindows then + callPackage ../tools/text/gnused { } # broken on Windows + else + gnused_422; # This is an easy work-around for [:space:] problems. gnused_422 = callPackage ../tools/text/gnused/422.nix { }; @@ -3016,6 +3063,8 @@ with pkgs; groonga = callPackage ../servers/search/groonga { }; + grpcurl = callPackage ../tools/networking/grpcurl { }; + grub = pkgsi686Linux.callPackage ../tools/misc/grub { buggyBiosCDSupport = config.grub.buggyBiosCDSupport or true; stdenv = overrideCC stdenv pkgsi686Linux.gcc6; @@ -3282,6 +3331,8 @@ with pkgs; hwinfo = callPackage ../tools/system/hwinfo { }; + hybridreverb2 = callPackage ../applications/audio/hybridreverb2 { }; + hylafaxplus = callPackage ../servers/hylafaxplus { }; i2c-tools = callPackage ../os-specific/linux/i2c-tools { }; @@ -3393,6 +3444,8 @@ with pkgs; ip2location = callPackage ../tools/networking/ip2location { }; + ip2unix = callPackage ../tools/networking/ip2unix { }; + ipad_charge = callPackage ../tools/misc/ipad_charge { }; iperf2 = callPackage ../tools/networking/iperf/2.nix { }; @@ -3538,7 +3591,10 @@ with pkgs; kexectools = callPackage ../os-specific/linux/kexectools { }; + kexpand = callPackage ../development/tools/kexpand { }; + keybase = callPackage ../tools/security/keybase { + inherit (darwin) cf-private; # Reasoning for the inherited apple_sdk.frameworks: # 1. specific compiler errors about: AVFoundation, AudioToolbox, MediaToolbox # 2. the rest are added from here: https://github.com/keybase/client/blob/68bb8c893c5214040d86ea36f2f86fbb7fac8d39/go/chat/attachments/preview_darwin.go#L7 @@ -3891,8 +3947,6 @@ with pkgs; libiberty_static = libiberty.override { staticBuild = true; }; - libibverbs = callPackage ../development/libraries/libibverbs { }; - libxc = callPackage ../development/libraries/libxc { }; libxcomp = callPackage ../development/libraries/libxcomp { }; @@ -3903,8 +3957,6 @@ with pkgs; libzmf = callPackage ../development/libraries/libzmf {}; - librdmacm = callPackage ../development/libraries/librdmacm { }; - libreswan = callPackage ../tools/networking/libreswan { }; libwebsockets = callPackage ../development/libraries/libwebsockets { }; @@ -4151,6 +4203,8 @@ with pkgs; modemmanager = callPackage ../tools/networking/modem-manager {}; + modem-manager-gui = callPackage ../applications/networking/modem-manager-gui {}; + modsecurity_standalone = callPackage ../tools/security/modsecurity { }; molly-guard = callPackage ../os-specific/linux/molly-guard { }; @@ -4368,6 +4422,8 @@ with pkgs; nms = callPackage ../tools/misc/nms { }; + nomachine-client = callPackage ../tools/admin/nomachine-client { }; + notify-desktop = callPackage ../tools/misc/notify-desktop {}; nkf = callPackage ../tools/text/nkf {}; @@ -4722,6 +4778,8 @@ with pkgs; pg_top = callPackage ../tools/misc/pg_top { }; + pgmetrics = callPackage ../tools/misc/pgmetrics { }; + pdsh = callPackage ../tools/networking/pdsh { rsh = true; # enable internal rsh implementation ssh = openssh; @@ -4758,6 +4816,7 @@ with pkgs; }; pinentry_mac = callPackage ../tools/security/pinentry/mac.nix { + inherit (darwin) cf-private; inherit (darwin.apple_sdk.frameworks) Cocoa; }; @@ -4943,10 +5002,6 @@ with pkgs; esteidfirefoxplugin = callPackage ../applications/networking/browsers/mozilla-plugins/esteidfirefoxplugin { }; - qgifer = callPackage ../applications/video/qgifer { - giflib = giflib_4_1; - }; - qhull = callPackage ../development/libraries/qhull { }; qjoypad = callPackage ../tools/misc/qjoypad { }; @@ -5069,6 +5124,8 @@ with pkgs; recoverjpeg = callPackage ../tools/misc/recoverjpeg { }; + reftools = callPackage ../development/tools/reftools { }; + reposurgeon = callPackage ../applications/version-management/reposurgeon { }; reptyr = callPackage ../os-specific/linux/reptyr {}; @@ -5825,6 +5882,8 @@ with pkgs; untrunc = callPackage ../tools/video/untrunc { }; + up = callPackage ../tools/misc/up { }; + upx = callPackage ../tools/compression/upx { }; uqmi = callPackage ../tools/networking/uqmi { }; @@ -5940,7 +5999,9 @@ with pkgs; wal_e = callPackage ../tools/backup/wal-e { }; - watchexec = callPackage ../tools/misc/watchexec { }; + watchexec = callPackage ../tools/misc/watchexec { + inherit (darwin.apple_sdk.frameworks) CoreServices CoreFoundation; + }; watchman = callPackage ../development/tools/watchman { inherit (darwin.apple_sdk.frameworks) CoreServices; @@ -6182,6 +6243,10 @@ with pkgs; wol = callPackage ../tools/networking/wol { }; + wolf-shaper = callPackage ../applications/audio/wolf-shaper { }; + + wpgtk = callPackage ../tools/X11/wpgtk { }; + wring = nodePackages.wring; wrk = callPackage ../tools/networking/wrk { }; @@ -6434,9 +6499,12 @@ with pkgs; then callPackage adoptopenjdk-bin-11-packages-linux.jre-hotspot {} else callPackage adoptopenjdk-bin-11-packages-darwin.jre-hotspot {}; - # no OpenJ9 for Darwin - adoptopenjdk-openj9-bin-11 = callPackage adoptopenjdk-bin-11-packages-linux.jdk-openj9 {}; - adoptopenjdk-jre-openj9-bin-11 = callPackage adoptopenjdk-bin-11-packages-linux.jre-openj9 {}; + adoptopenjdk-openj9-bin-11 = if stdenv.isLinux + then callPackage adoptopenjdk-bin-11-packages-linux.jdk-openj9 {} + else callPackage adoptopenjdk-bin-11-packages-darwin.jdk-openj9 {}; + adoptopenjdk-jre-openj9-bin-11 = if stdenv.isLinux + then callPackage adoptopenjdk-bin-11-packages-linux.jre-openj9 {} + else callPackage adoptopenjdk-bin-11-packages-darwin.jre-openj9 {}; adoptopenjdk-bin = adoptopenjdk-hotspot-bin-11; adoptopenjdk-jre-bin = adoptopenjdk-jre-hotspot-bin-11; @@ -6831,36 +6899,6 @@ with pkgs; gcl_2_6_13_pre = callPackage ../development/compilers/gcl/2.6.13-pre.nix { }; - gcc-arm-embedded-4_7 = pkgsi686Linux.callPackage ../development/compilers/gcc-arm-embedded { - version = "4.7-2013q3-20130916"; - releaseType = "update"; - sha256 = "1bd9bi9q80xn2rpy0rn1vvj70rh15kb7dmah0qs4q2rv78fqj40d"; - ncurses = pkgsi686Linux.ncurses5; - }; - gcc-arm-embedded-4_8 = pkgsi686Linux.callPackage ../development/compilers/gcc-arm-embedded { - version = "4.8-2014q1-20140314"; - releaseType = "update"; - sha256 = "ce92859550819d4a3d1a6e2672ea64882b30afa2c08cf67fa8e1d93788c2c577"; - ncurses = pkgsi686Linux.ncurses5; - }; - gcc-arm-embedded-4_9 = pkgsi686Linux.callPackage ../development/compilers/gcc-arm-embedded { - version = "4.9-2015q1-20150306"; - releaseType = "update"; - sha256 = "c5e0025b065750bbd76b5357b4fc8606d88afbac9ff55b8a82927b4b96178154"; - ncurses = pkgsi686Linux.ncurses5; - }; - gcc-arm-embedded-5 = pkgs.pkgsi686Linux.callPackage ../development/compilers/gcc-arm-embedded { - dirName = "5.0"; - subdirName = "5-2016-q2-update"; - version = "5.4-2016q2-20160622"; - releaseType = "update"; - sha256 = "1r0rqbnw7rf94f5bsa3gi8bick4xb7qnp1dkvdjfbvqjvysvc44r"; - ncurses = pkgsi686Linux.ncurses5; - }; - gcc-arm-embedded-6 = callPackage ../development/compilers/gcc-arm-embedded/6 {}; - gcc-arm-embedded-7 = callPackage ../development/compilers/gcc-arm-embedded/7 {}; - gcc-arm-embedded = gcc-arm-embedded-7; - gforth = callPackage ../development/compilers/gforth {}; gtk-server = callPackage ../development/interpreters/gtk-server {}; @@ -6869,7 +6907,7 @@ with pkgs; haskell = callPackage ./haskell-packages.nix { }; - haskellPackages = haskell.packages.ghc843.override { + haskellPackages = haskell.packages.ghc844.override { overrides = config.haskellPackageOverrides or haskell.packageOverrides; }; @@ -6949,6 +6987,10 @@ with pkgs; go-junit-report = callPackage ../development/tools/go-junit-report { }; + gogetdoc = callPackage ../development/tools/gogetdoc { }; + + gometalinter = callPackage ../development/tools/gometalinter { }; + gox = callPackage ../development/tools/gox { }; gprolog = callPackage ../development/compilers/gprolog { }; @@ -6990,11 +7032,11 @@ with pkgs; inherit (gnome2) GConf gnome_vfs; }; - openjdk10 = + openjdk11 = if stdenv.isDarwin then - callPackage ../development/compilers/openjdk/darwin/10.nix { } + callPackage ../development/compilers/openjdk/darwin/11.nix { } else - callPackage ../development/compilers/openjdk/10.nix { + callPackage ../development/compilers/openjdk/11.nix { inherit (gnome2) GConf gnome_vfs; }; @@ -7014,17 +7056,14 @@ with pkgs; (lib.addMetaAttrs { outputsToInstall = [ "jre" ]; } ((openjdk8.override { minimal = true; }).jre // { outputs = [ "jre" ]; })); - jdk10 = openjdk10 // { outputs = [ "out" ]; }; - jre10 = lib.setName "openjre-${lib.getVersion pkgs.openjdk10.jre}" - (lib.addMetaAttrs { outputsToInstall = [ "jre" ]; } - (openjdk10.jre // { outputs = [ "jre" ]; })); - jre10_headless = + jdk11 = openjdk11 // { outputs = [ "out" ]; }; + jdk11_headless = if stdenv.isDarwin then - jre10 + jdk11 else - lib.setName "openjre-${lib.getVersion pkgs.openjdk10.jre}-headless" - (lib.addMetaAttrs { outputsToInstall = [ "jre" ]; } - ((openjdk10.override { minimal = true; }).jre // { outputs = [ "jre" ]; })); + lib.setName "openjdk-${lib.getVersion pkgs.openjdk11}-headless" + (lib.addMetaAttrs {} + ((openjdk11.override { minimal = true; }) // {})); jdk = jdk8; jre = jre8; @@ -7042,18 +7081,12 @@ with pkgs; oraclejdk8psu = pkgs.oraclejdk8psu_distro true false; - oraclejdk10 = pkgs.oraclejdk10distro "JDK" false; - oraclejre = lowPrio (pkgs.jdkdistro false false); oraclejre8 = lowPrio (pkgs.oraclejdk8distro false false); oraclejre8psu = lowPrio (pkgs.oraclejdk8psu_distro false false); - oraclejre10 = lowPrio (pkgs.oraclejdk10distro "JRE" false); - - oracleserverjre10 = lowPrio (pkgs.oraclejdk10distro "ServerJRE" false); - jrePlugin = jre8Plugin; jre8Plugin = lowPrio (pkgs.oraclejdk8distro false true); @@ -7068,9 +7101,6 @@ with pkgs; (if pluginSupport then appendToName "with-plugin" else x: x) (callPackage ../development/compilers/oraclejdk/jdk8psu-linux.nix { inherit installjdk pluginSupport; }); - oraclejdk10distro = packageType: _: - (callPackage ../development/compilers/oraclejdk/jdk10-linux.nix { inherit packageType; }); - javacard-devkit = pkgsi686Linux.callPackage ../development/compilers/javacard-devkit { }; jikes = callPackage ../development/compilers/jikes { }; @@ -7200,10 +7230,6 @@ with pkgs; manticore = callPackage ../development/compilers/manticore { }; - mentorToolchains = recurseIntoAttrs ( - pkgsi686Linux.callPackage ../development/compilers/mentor {} - ); - mercury = callPackage ../development/compilers/mercury { }; microscheme = callPackage ../development/compilers/microscheme { }; @@ -7299,7 +7325,7 @@ with pkgs; metaocaml_3_09 = callPackage ../development/compilers/ocaml/metaocaml-3.09.nix { }; - ber_metaocaml = callPackage ../development/compilers/ocaml/ber-metaocaml-104.nix { }; + ber_metaocaml = callPackage ../development/compilers/ocaml/ber-metaocaml.nix { }; ocaml_make = callPackage ../development/ocaml-modules/ocamlmake { }; @@ -7379,9 +7405,12 @@ with pkgs; cargo-tree = callPackage ../tools/package-management/cargo-tree { }; cargo-update = callPackage ../tools/package-management/cargo-update { }; - cargo-asm = callPackage ../development/tools/rust/cargo-asm { }; + cargo-asm = callPackage ../development/tools/rust/cargo-asm { + inherit (darwin.apple_sdk.frameworks) Security; + }; cargo-fuzz = callPackage ../development/tools/rust/cargo-fuzz { }; + pyo3-pack = callPackage ../development/tools/rust/pyo3-pack { }; rainicorn = callPackage ../development/tools/rust/rainicorn { }; rustfmt = callPackage ../development/tools/rust/rustfmt { }; rustracer = callPackage ../development/tools/rust/racer { }; @@ -7570,6 +7599,8 @@ with pkgs; dhall-text = haskell.lib.justStaticExecutables haskellPackages.dhall-text; + dhallPackages = import ../development/dhall-modules { inherit pkgs; }; + duktape = callPackage ../development/interpreters/duktape { }; beam = callPackage ./beam-packages.nix { }; @@ -7621,6 +7652,10 @@ with pkgs; kanif = callPackage ../applications/networking/cluster/kanif { }; + lumo = callPackage ../development/interpreters/clojurescript/lumo { + nodejs = nodejs-10_x; + }; + lxappearance = callPackage ../desktops/lxde/core/lxappearance { gtk2 = gtk2-x11; }; @@ -7684,10 +7719,7 @@ with pkgs; lush2 = callPackage ../development/interpreters/lush {}; - maude = callPackage ../development/interpreters/maude { - bison = bison2; - flex = flex_2_5_35; - }; + maude = callPackage ../development/interpreters/maude { }; mesos = callPackage ../applications/networking/cluster/mesos { sasl = cyrus_sasl; @@ -7793,7 +7825,6 @@ with pkgs; python2Full = python2.override{x11Support=true;}; python27Full = python27.override{x11Support=true;}; python3Full = python3.override{x11Support=true;}; - python34Full = python34.override{x11Support=true;}; python35Full = python35.override{x11Support=true;}; python36Full = python36.override{x11Support=true;}; python37Full = python37.override{x11Support=true;}; @@ -7807,10 +7838,6 @@ with pkgs; self = python27; inherit (darwin) CF configd; }; - python34 = callPackage ../development/interpreters/python/cpython/3.4 { - inherit (darwin) CF configd; - self = python34; - }; python35 = callPackage ../development/interpreters/python/cpython/3.5 { inherit (darwin) CF configd; self = python35; @@ -7832,7 +7859,6 @@ with pkgs; # Python package sets. python27Packages = lib.hiPrioSet (recurseIntoAttrs python27.pkgs); - python34Packages = python34.pkgs; python35Packages = python35.pkgs; python36Packages = recurseIntoAttrs python36.pkgs; python37Packages = python37.pkgs; @@ -7986,17 +8012,17 @@ with pkgs; amtk = callPackage ../development/libraries/amtk { }; - avrgcclibc = throw "avrgcclibs are now separate packages, install avrbinutils, avrgcc and avrlibc"; - - avrbinutils = callPackage ../development/misc/avr/binutils {}; - - avrgcc = callPackage ../development/misc/avr/gcc {}; - - avrlibc = callPackage ../development/misc/avr/libc {}; + avrlibc = callPackage ../development/misc/avr/libc {}; + avrlibcCross = callPackage ../development/misc/avr/libc { + stdenv = crossLibcStdenv; + }; avr8burnomat = callPackage ../development/misc/avr8-burn-omat { }; - betaflight = callPackage ../development/misc/stm32/betaflight { }; + betaflight = callPackage ../development/misc/stm32/betaflight { + gcc-arm-embedded = pkgsCross.arm-embedded.buildPackages.gcc; + binutils-arm-embedded = pkgsCross.arm-embedded.buildPackages.binutils; + }; sourceFromHead = callPackage ../build-support/source-from-head-fun.nix {}; @@ -8004,6 +8030,8 @@ with pkgs; jython = callPackage ../development/interpreters/jython {}; + gImageReader = callPackage ../applications/misc/gImageReader { }; + guile-cairo = callPackage ../development/guile-modules/guile-cairo { }; guile-fibers = callPackage ../development/guile-modules/guile-fibers { }; @@ -8032,7 +8060,10 @@ with pkgs; guile = guile_2_0; }; - inav = callPackage ../development/misc/stm32/inav { }; + inav = callPackage ../development/misc/stm32/inav { + gcc-arm-embedded = pkgsCross.arm-embedded.buildPackages.gcc; + binutils-arm-embedded = pkgsCross.arm-embedded.buildPackages.binutils; + }; pharo-vms = callPackage ../development/pharo/vm { }; pharo = pharo-vms.multi-vm-wrapper; @@ -8075,6 +8106,7 @@ with pkgs; ansible_2_4 ansible_2_5 ansible_2_6 + ansible_2_7 ansible2 ansible; @@ -8147,10 +8179,10 @@ with pkgs; inherit (darwin) cctools; inherit (darwin.apple_sdk.frameworks) CoreFoundation CoreServices Foundation; }; - bazel_jdk10 = callPackage ../development/tools/build-managers/bazel { + bazel_jdk11 = callPackage ../development/tools/build-managers/bazel { inherit (darwin) cctools; inherit (darwin.apple_sdk.frameworks) CoreFoundation CoreServices Foundation; - runJdk = jdk10; + runJdk = jdk11; }; bazel-buildtools = callPackage ../development/tools/build-managers/bazel/buildtools { }; @@ -8190,6 +8222,8 @@ with pkgs; blackmagic = callPackage ../development/tools/misc/blackmagic { stdenv = overrideCC stdenv gcc6; + gcc-arm-embedded = pkgsCross.arm-embedded.buildPackages.gcc; + binutils-arm-embedded = pkgsCross.arm-embedded.buildPackages.binutils; }; bloaty = callPackage ../development/tools/bloaty { }; @@ -8471,7 +8505,6 @@ with pkgs; jdepend = callPackage ../development/tools/analysis/jdepend { }; flex_2_5_35 = callPackage ../development/tools/parsing/flex/2.5.35.nix { }; - flex_2_6_1 = callPackage ../development/tools/parsing/flex/2.6.1.nix { }; flex = callPackage ../development/tools/parsing/flex { }; flexcpp = callPackage ../development/tools/parsing/flexc++ { }; @@ -8818,6 +8851,8 @@ with pkgs; hammer = callPackage ../development/tools/parsing/hammer { }; + rdocker = callPackage ../development/tools/rdocker { }; + redis-dump = callPackage ../development/tools/redis-dump { }; redo = callPackage ../development/tools/build-managers/redo { }; @@ -8984,10 +9019,6 @@ with pkgs; qcachegrind = libsForQt5.callPackage ../development/tools/analysis/qcachegrind {}; - verasco = ocaml-ng.ocamlPackages_4_02.verasco.override { - coq = coq_8_4; - }; - visualvm = callPackage ../development/tools/java/visualvm { }; vultr = callPackage ../development/tools/vultr { }; @@ -9050,6 +9081,8 @@ with pkgs; acl = callPackage ../development/libraries/acl { }; + acsccid = callPackage ../tools/security/acsccid { }; + activemq = callPackage ../development/libraries/apache-activemq { }; adns = callPackage ../development/libraries/adns { }; @@ -9090,6 +9123,8 @@ with pkgs; arb = callPackage ../development/libraries/arb {}; arb-git = callPackage ../development/libraries/arb/git.nix {}; + argp-standalone = callPackage ../development/libraries/argp-standalone {}; + armadillo = callPackage ../development/libraries/armadillo {}; arrow-cpp = callPackage ../development/libraries/arrow-cpp {}; @@ -9553,7 +9588,10 @@ with pkgs; flite = callPackage ../development/libraries/flite { }; - fltk13 = callPackage ../development/libraries/fltk { }; + fltk13 = callPackage ../development/libraries/fltk { + inherit (darwin) cf-private; + inherit (darwin.apple_sdk.frameworks) Cocoa AGL GLUT; + }; fltk = self.fltk13; flyway = callPackage ../development/tools/flyway { }; @@ -9569,6 +9607,8 @@ with pkgs; frog = self.languageMachines.frog; + fstrcmp = callPackage ../development/libraries/fstrcmp { }; + fstrm = callPackage ../development/libraries/fstrm { }; cfitsio = callPackage ../development/libraries/cfitsio { }; @@ -9705,7 +9745,10 @@ with pkgs; glfw = glfw3; glfw2 = callPackage ../development/libraries/glfw/2.x.nix { }; - glfw3 = callPackage ../development/libraries/glfw/3.x.nix { }; + glfw3 = callPackage ../development/libraries/glfw/3.x.nix { + inherit (darwin) cf-private; + inherit (darwin.apple_sdk.frameworks) Cocoa Kernel; + }; glibc = callPackage ../development/libraries/glibc { installLocales = config.glibc.locales or false; @@ -9739,11 +9782,13 @@ with pkgs; # libc is hackily often used from the previous stage. This `or` # hack fixes the hack, *sigh*. /**/ if name == "glibc" then targetPackages.glibcCross or glibcCross - else if name == "bionic" then targetPackages.bionic - else if name == "uclibc" then targetPackages.uclibcCross + else if name == "bionic" then targetPackages.bionic or bionic + else if name == "uclibc" then targetPackages.uclibcCross or uclibcCross + else if name == "avrlibc" then targetPackages.avrlibcCross or avrlibcCross + else if name == "newlib" then targetPackages.newlibCross or newlibCross else if name == "musl" then targetPackages.muslCross or muslCross else if name == "msvcrt" then targetPackages.windows.mingw_w64 or windows.mingw_w64 - else if stdenv.targetPlatform.useiOSPrebuilt then targetPackages.darwin.iosSdkPkgs.libraries + else if stdenv.targetPlatform.useiOSPrebuilt then targetPackages.darwin.iosSdkPkgs.libraries or darwin.iosSdkPkgs.libraries else if name == "libSystem" then targetPackages.darwin.xcode else throw "Unknown libc"; @@ -10146,6 +10191,8 @@ with pkgs; imlibsetroot = callPackage ../applications/graphics/imlibsetroot { libXinerama = xorg.libXinerama; } ; + ineffassign = callPackage ../development/tools/ineffassign { }; + ijs = callPackage ../development/libraries/ijs { }; incrtcl = callPackage ../development/libraries/incrtcl { }; @@ -10204,6 +10251,8 @@ with pkgs; jsonrpc-glib = callPackage ../development/libraries/jsonrpc-glib { }; + jxrlib = callPackage ../development/libraries/jxrlib { }; + libjson = callPackage ../development/libraries/libjson { }; libb64 = callPackage ../development/libraries/libb64 { }; @@ -11001,6 +11050,8 @@ with pkgs; libosip_3 = callPackage ../development/libraries/osip/3.nix {}; + libosmium = callPackage ../development/libraries/libosmium { }; + libosmocore = callPackage ../applications/misc/libosmocore { }; libosmpbf = callPackage ../development/libraries/libosmpbf {}; @@ -11138,7 +11189,10 @@ with pkgs; libuecc = callPackage ../development/libraries/libuecc { }; - libui = callPackage ../development/libraries/libui { }; + libui = callPackage ../development/libraries/libui { + inherit (darwin) cf-private; + inherit (darwin.apple_sdk.frameworks) Cocoa; + }; libunistring = callPackage ../development/libraries/libunistring { }; @@ -11150,6 +11204,8 @@ with pkgs; giflib_4_1 = callPackage ../development/libraries/giflib/4.1.nix { }; giflib_5_1 = callPackage ../development/libraries/giflib/5.1.nix { }; + libunarr = callPackage ../development/libraries/libunarr { }; + libungif = callPackage ../development/libraries/giflib/libungif.nix { }; libunibreak = callPackage ../development/libraries/libunibreak { }; @@ -11586,6 +11642,8 @@ with pkgs; opencv = callPackage ../development/libraries/opencv { ffmpeg = ffmpeg_2; + inherit (darwin) cf-private; + inherit (darwin.apple_sdk.frameworks) Cocoa QTKit; }; opencv3 = callPackage ../development/libraries/opencv/3.x.nix { @@ -11623,6 +11681,7 @@ with pkgs; opensaml-cpp = callPackage ../development/libraries/opensaml-cpp { }; openscenegraph = callPackage ../development/libraries/openscenegraph { }; + openscenegraph_3_4 = callPackage ../development/libraries/openscenegraph/3.4.0.nix { }; openslp = callPackage ../development/libraries/openslp {}; @@ -11711,7 +11770,9 @@ with pkgs; pgroonga = callPackage ../servers/sql/postgresql/pgroonga {}; plv8 = callPackage ../servers/sql/postgresql/plv8 { - v8 = v8_6_x; + v8 = callPackage ../development/libraries/v8/plv8_6_x.nix { + inherit (python2Packages) python; + }; }; phonon = callPackage ../development/libraries/phonon {}; @@ -11799,6 +11860,8 @@ with pkgs; protobufc = callPackage ../development/libraries/protobufc/1.3.nix { }; + protozero = callPackage ../development/libraries/protozero { }; + flatbuffers = callPackage ../development/libraries/flatbuffers { }; gnupth = callPackage ../development/libraries/pth { }; @@ -11812,7 +11875,7 @@ with pkgs; re2 = callPackage ../development/libraries/re2 { }; - qbs = callPackage ../development/tools/build-managers/qbs { }; + qbs = libsForQt5.callPackage ../development/tools/build-managers/qbs { }; qca2 = callPackage ../development/libraries/qca2 { qt = qt4; }; qca2-qt5 = qca2.override { qt = qt5.qtbase; }; @@ -12139,10 +12202,7 @@ with pkgs; schroedinger = callPackage ../development/libraries/schroedinger { }; SDL = callPackage ../development/libraries/SDL { - openglSupport = libGLSupported; - alsaSupport = stdenv.isLinux; - x11Support = !stdenv.isCygwin; - pulseaudioSupport = config.pulseaudio or stdenv.isLinux; + inherit (darwin) cf-private; inherit (darwin.apple_sdk.frameworks) OpenGL CoreAudio CoreServices AudioUnit Kernel Cocoa; }; @@ -12163,12 +12223,7 @@ with pkgs; SDL_ttf = callPackage ../development/libraries/SDL_ttf { }; SDL2 = callPackage ../development/libraries/SDL2 { - openglSupport = libGLSupported; - alsaSupport = stdenv.isLinux; - x11Support = !stdenv.isCygwin; - waylandSupport = stdenv.isLinux; - udevSupport = stdenv.isLinux; - pulseaudioSupport = config.pulseaudio or stdenv.isLinux; + inherit (darwin) cf-private; inherit (darwin.apple_sdk.frameworks) AudioUnit Cocoa CoreAudio CoreServices ForceFeedback OpenGL; }; @@ -12202,9 +12257,13 @@ with pkgs; graphite2 = callPackage ../development/libraries/silgraphite/graphite2.nix {}; - simavr = callPackage ../development/tools/simavr { }; + simavr = callPackage ../development/tools/simavr { + avrgcc = pkgsCross.avr.buildPackages.gcc; + avrbinutils = pkgsCross.avr.buildPackages.binutils; + avrlibc = pkgsCross.avr.libcCross; + }; - simgear = callPackage ../development/libraries/simgear { }; + simgear = callPackage ../development/libraries/simgear { openscenegraph = openscenegraph_3_4; }; simp_le = callPackage ../tools/admin/simp_le { }; @@ -12302,6 +12361,8 @@ with pkgs; spandsp = callPackage ../development/libraries/spandsp {}; + spaceship-prompt = callPackage ../shells/zsh/spaceship-prompt {}; + spatialite_tools = callPackage ../development/libraries/spatialite-tools { }; spdk = callPackage ../development/libraries/spdk { }; @@ -12383,6 +12444,8 @@ with pkgs; ncurses = null; }); + standardnotes = callPackage ../applications/editors/standardnotes { }; + stfl = callPackage ../development/libraries/stfl { }; stlink = callPackage ../development/tools/misc/stlink { }; @@ -12532,6 +12595,8 @@ with pkgs; vala = vala_0_40; }; + unconvert = callPackage ../development/tools/unconvert { }; + unibilium = callPackage ../development/libraries/unibilium { }; unicap = callPackage ../development/libraries/unicap {}; @@ -13203,6 +13268,8 @@ with pkgs; dex-oidc = callPackage ../servers/dex { }; + doh-proxy = callPackage ../servers/dns/doh-proxy { }; + dgraph = callPackage ../servers/dgraph { }; dico = callPackage ../servers/dico { }; @@ -13290,6 +13357,8 @@ with pkgs; grafana = callPackage ../servers/monitoring/grafana { }; + grafana_reporter = callPackage ../servers/monitoring/grafana-reporter { }; + h2o = callPackage ../servers/http/h2o { }; haka = callPackage ../tools/security/haka { }; @@ -13595,22 +13664,25 @@ with pkgs; pgbouncer = callPackage ../servers/sql/pgbouncer { }; - pgpool93 = pgpool.override { postgresql = postgresql93; }; - pgpool94 = pgpool.override { postgresql = postgresql94; }; + pgpool93 = pgpool.override { postgresql = postgresql_9_3; }; + pgpool94 = pgpool.override { postgresql = postgresql_9_4; }; pgpool = callPackage ../servers/sql/pgpool { pam = if stdenv.isLinux then pam else null; libmemcached = null; # Detection is broken upstream }; - postgresql = postgresql96; + timescaledb-parallel-copy = callPackage ../development/tools/database/timescaledb-parallel-copy { }; + + postgresql = postgresql_9_6; inherit (callPackages ../servers/sql/postgresql { }) - postgresql93 - postgresql94 - postgresql95 - postgresql96 - postgresql100; + postgresql_9_3 + postgresql_9_4 + postgresql_9_5 + postgresql_9_6 + postgresql_10 + postgresql_11; postgresql_jdbc = callPackage ../servers/sql/postgresql/jdbc { }; @@ -13855,10 +13927,14 @@ with pkgs; xqilla = callPackage ../development/tools/xqilla { }; - xquartz = callPackage ../servers/x11/xquartz { }; + xquartz = callPackage ../servers/x11/xquartz { + inherit (darwin) cf-private; + }; + quartz-wm = callPackage ../servers/x11/quartz-wm { stdenv = clangStdenv; - inherit (darwin.apple_sdk.frameworks) AppKit; + inherit (darwin) cf-private; + inherit (darwin.apple_sdk.frameworks) AppKit Foundation; inherit (darwin.apple_sdk.libs) Xplugin; }; @@ -13867,7 +13943,9 @@ with pkgs; # have created a cycle. xorg = recurseIntoAttrs ((lib.callPackageWith __splicedPackages ../servers/x11/xorg { }).overrideScope' (lib.callPackageWith __splicedPackages ../servers/x11/xorg/overrides.nix { - inherit (darwin) apple_sdk; + inherit (darwin) cf-private; + inherit (darwin.apple_sdk.frameworks) ApplicationServices Carbon Cocoa; + inherit (darwin.apple_sdk.libs) Xplugin; bootstrap_cmds = if stdenv.isDarwin then darwin.bootstrap_cmds else null; python = python2; # Incompatible with Python 3x udev = if stdenv.isLinux then udev else null; @@ -13996,6 +14074,8 @@ with pkgs; cpufrequtils = callPackage ../os-specific/linux/cpufrequtils { }; + cpuset = callPackage ../os-specific/linux/cpuset { }; + criu = callPackage ../os-specific/linux/criu { }; cryptsetup = callPackage ../os-specific/linux/cryptsetup { }; @@ -14029,6 +14109,8 @@ with pkgs; drbd = callPackage ../os-specific/linux/drbd { }; + dropwatch = callPackage ../os-specific/linux/dropwatch { }; + dstat = callPackage ../os-specific/linux/dstat { }; # unstable until the first 1.x release @@ -14099,9 +14181,7 @@ with pkgs; gpu-switch = callPackage ../os-specific/linux/gpu-switch { }; - gradm = callPackage ../os-specific/linux/gradm { - flex = flex_2_5_35; - }; + gradm = callPackage ../os-specific/linux/gradm { }; hd-idle = callPackage ../os-specific/linux/hd-idle { }; @@ -14213,14 +14293,6 @@ with pkgs; klibcShrunk = lowPrio (callPackage ../os-specific/linux/klibc/shrunk.nix { }); - linux_beagleboard = callPackage ../os-specific/linux/kernel/linux-beagleboard.nix { - kernelPatches = - [ kernelPatches.bridge_stp_helper - kernelPatches.cpu-cgroup-v2."4.11" - kernelPatches.modinst_arg_list_too_long - ]; - }; - linux_mptcp = linux_mptcp_94; linux_mptcp_94 = callPackage ../os-specific/linux/kernel/linux-mptcp.nix { kernelPatches = @@ -14268,11 +14340,6 @@ with pkgs; [ kernelPatches.bridge_stp_helper kernelPatches.cpu-cgroup-v2."4.9" kernelPatches.modinst_arg_list_too_long - # https://github.com/NixOS/nixpkgs/issues/42755 - # Remove these xen-netfront patches once they're included in - # upstream! Fixes https://github.com/NixOS/nixpkgs/issues/42755 - kernelPatches.xen-netfront_fix_mismatched_rtnl_unlock - kernelPatches.xen-netfront_update_features_after_registering_netdev ]; }; @@ -14283,11 +14350,6 @@ with pkgs; # when adding a new linux version kernelPatches.cpu-cgroup-v2."4.11" kernelPatches.modinst_arg_list_too_long - # https://github.com/NixOS/nixpkgs/issues/42755 - # Remove these xen-netfront patches once they're included in - # upstream! Fixes https://github.com/NixOS/nixpkgs/issues/42755 - kernelPatches.xen-netfront_fix_mismatched_rtnl_unlock - kernelPatches.xen-netfront_update_features_after_registering_netdev ]; }; @@ -14325,24 +14387,6 @@ with pkgs; ]; }; - linux_riscv = callPackage ../os-specific/linux/kernel/linux-riscv.nix { - kernelPatches = [ - kernelPatches.bridge_stp_helper - kernelPatches.modinst_arg_list_too_long - ]; - }; - - linux_samus_4_12 = callPackage ../os-specific/linux/kernel/linux-samus-4.12.nix { - kernelPatches = - [ kernelPatches.bridge_stp_helper - kernelPatches.p9_fixes - # See pkgs/os-specific/linux/kernel/cpu-cgroup-v2-patches/README.md - # when adding a new linux version - kernelPatches.cpu-cgroup-v2."4.11" - kernelPatches.modinst_arg_list_too_long - ]; - }; - linux_hardkernel_4_14 = callPackage ../os-specific/linux/kernel/linux-hardkernel-4.14.nix { kernelPatches = [ kernelPatches.bridge_stp_helper @@ -14375,6 +14419,8 @@ with pkgs; python = python3; }; + bpftrace = callPackage ../os-specific/linux/bpftrace { }; + bbswitch = callPackage ../os-specific/linux/bbswitch {}; beegfs-module = callPackage ../os-specific/linux/beegfs/kernel-module.nix { }; @@ -14509,7 +14555,6 @@ with pkgs; linux_latest = linuxPackages_latest.kernel; # Build the kernel modules for the some of the kernels. - linuxPackages_beagleboard = linuxPackagesFor pkgs.linux_beagleboard; linuxPackages_mptcp = linuxPackagesFor pkgs.linux_mptcp; linuxPackages_rpi = linuxPackagesFor pkgs.linux_rpi; linuxPackages_4_4 = recurseIntoAttrs (linuxPackagesFor pkgs.linux_4_4); @@ -14569,11 +14614,6 @@ with pkgs; linuxPackages_latest_xen_dom0_hardened = recurseIntoAttrs (hardenedLinuxPackagesFor (pkgs.linux_latest.override { features.xen_dom0=true; })); - # Samus kernels - linuxPackages_samus_4_12 = recurseIntoAttrs (linuxPackagesFor pkgs.linux_samus_4_12); - linuxPackages_samus_latest = linuxPackages_samus_4_12; - linux_samus_latest = linuxPackages_samus_latest.kernel; - # Hardkernel (Odroid) kernels. linuxPackages_hardkernel_4_14 = recurseIntoAttrs (linuxPackagesFor pkgs.linux_hardkernel_4_14); linuxPackages_hardkernel_latest = linuxPackages_hardkernel_4_14; @@ -14702,19 +14742,24 @@ with pkgs; easyjson = callPackage ../development/tools/easyjson { }; + iferr = callPackage ../development/tools/iferr { }; + go-bindata = callPackage ../development/tools/go-bindata { }; go-bindata-assetfs = callPackage ../development/tools/go-bindata-assetfs { }; go-protobuf = callPackage ../development/tools/go-protobuf { }; - go-symbols = callPackage ../development/tools/go-symbols { }; go-outline = callPackage ../development/tools/go-outline { }; gocode = callPackage ../development/tools/gocode { }; + gocode-gomod = callPackage ../development/tools/gocode-gomod { }; + + goconst = callPackage ../development/tools/goconst { }; + goconvey = callPackage ../development/tools/goconvey { }; gotags = callPackage ../development/tools/gotags { }; @@ -14723,14 +14768,20 @@ with pkgs; golangci-lint = callPackage ../development/tools/golangci-lint { }; + gocyclo = callPackage ../development/tools/gocyclo { }; + godef = callPackage ../development/tools/godef { }; gopkgs = callPackage ../development/tools/gopkgs { }; + gosec = callPackage ../development/tools/gosec { }; + govers = callPackage ../development/tools/govers { }; govendor = callPackage ../development/tools/govendor { }; + go-tools = callPackage ../development/tools/go-tools { }; + gotools = callPackage ../development/tools/gotools { }; gotop = callPackage ../tools/system/gotop { }; @@ -14743,6 +14794,8 @@ with pkgs; gotests = callPackage ../development/tools/gotests { }; + impl = callPackage ../development/tools/impl { }; + quicktemplate = callPackage ../development/tools/quicktemplate { }; gogoclient = callPackage ../os-specific/linux/gogoclient { }; @@ -14810,8 +14863,6 @@ with pkgs; pmutils = callPackage ../os-specific/linux/pm-utils { }; - pmtools = callPackage ../os-specific/linux/pmtools { }; - policycoreutils = callPackage ../os-specific/linux/policycoreutils { }; semodule-utils = callPackage ../os-specific/linux/semodule-utils { }; @@ -15508,6 +15559,10 @@ with pkgs; hasklig = callPackage ../data/fonts/hasklig {}; + interfacer = callPackage ../development/tools/interfacer { }; + + maligned = callPackage ../development/tools/maligned { }; + inter-ui = callPackage ../data/fonts/inter-ui { }; siji = callPackage ../data/fonts/siji { }; @@ -16056,6 +16111,8 @@ with pkgs; pulseaudioSupport = config.pulseaudio or false; }; + cmusfm = callPackage ../applications/audio/cmusfm { }; + cni = callPackage ../applications/networking/cluster/cni {}; cni-plugins = callPackage ../applications/networking/cluster/cni/plugins.nix {}; @@ -16099,9 +16156,7 @@ with pkgs; cpp_ethereum = callPackage ../applications/misc/cpp-ethereum { }; - csdp = callPackage ../applications/science/math/csdp { - liblapack = liblapackWithoutAtlas; - }; + csdp = callPackage ../applications/science/math/csdp { }; ctop = callPackage ../tools/system/ctop { }; @@ -16208,10 +16263,10 @@ with pkgs; }; inherit (callPackage ../applications/virtualization/docker {}) - docker_18_06; + docker_18_09; - docker = docker_18_06; - docker-edge = docker_18_06; + docker = docker_18_09; + docker-edge = docker_18_09; docker-proxy = callPackage ../applications/virtualization/docker/proxy.nix { }; @@ -16290,7 +16345,7 @@ with pkgs; eaglemode = callPackage ../applications/misc/eaglemode { }; eclipses = recurseIntoAttrs (callPackage ../applications/editors/eclipse { - jdk = jdk10; + jdk = jdk11; }); ecs-agent = callPackage ../applications/virtualization/ecs-agent { }; @@ -16326,6 +16381,7 @@ with pkgs; imagemagick = null; acl = null; gpm = null; + inherit (darwin) cf-private; inherit (darwin.apple_sdk.frameworks) AppKit GSS ImageIO; }; @@ -16344,6 +16400,7 @@ with pkgs; imagemagick = null; acl = null; gpm = null; + inherit (darwin) cf-private; inherit (darwin.apple_sdk.frameworks) AppKit GSS ImageIO; }; @@ -16353,8 +16410,8 @@ with pkgs; withGTK3 = false; })); - emacsMacport = emacs25Macport; - emacs25Macport = callPackage ../applications/editors/emacs/macport.nix { + emacsMacport = callPackage ../applications/editors/emacs/macport.nix { + inherit (darwin) cf-private; inherit (darwin.apple_sdk.frameworks) AppKit Carbon Cocoa IOKit OSAKit Quartz QuartzCore WebKit ImageCaptureCore GSS ImageIO; @@ -17173,6 +17230,8 @@ with pkgs; gxmessage = callPackage ../applications/misc/gxmessage { }; + gxplugins-lv2 = callPackage ../applications/audio/gxplugins-lv2 { }; + hackrf = callPackage ../applications/misc/hackrf { }; hakuneko = callPackage ../tools/misc/hakuneko { }; @@ -17208,6 +17267,8 @@ with pkgs; gtk = gtk3; }; + hovercraft = python3Packages.callPackage ../applications/misc/hovercraft { }; + howl = callPackage ../applications/editors/howl { }; ht = callPackage ../applications/editors/ht { }; @@ -17246,6 +17307,8 @@ with pkgs; slack-cli = callPackage ../tools/networking/slack-cli { }; + slack-term = callPackage ../applications/networking/instant-messengers/slack-term { }; + singularity = callPackage ../applications/virtualization/singularity { }; spectmorph = callPackage ../applications/audio/spectmorph { }; @@ -17475,6 +17538,8 @@ with pkgs; jwm = callPackage ../applications/window-managers/jwm { }; + jwm-settings-manager = callPackage ../applications/window-managers/jwm/jwm-settings-manager.nix { }; + k3d = callPackage ../applications/graphics/k3d { inherit (pkgs.gnome2) gtkglext; stdenv = overrideCC stdenv gcc6; @@ -17627,6 +17692,7 @@ with pkgs; librecad = callPackage ../applications/misc/librecad { }; libreoffice = hiPrio libreoffice-still; + libreoffice-unwrapped = libreoffice.libreoffice; libreoffice-args = { inherit (perlPackages) ArchiveZip IOCompress; @@ -17648,21 +17714,20 @@ with pkgs; }; }; - libreoffice-unwrapped = callPackage ../applications/office/libreoffice - (libreoffice-args // { - }); - libreoffice-still-unwrapped = callPackage ../applications/office/libreoffice/still.nix - (libreoffice-args // { - poppler = poppler_0_61; - }); - libreoffice-fresh = lowPrio (callPackage ../applications/office/libreoffice/wrapper.nix { - libreoffice = libreoffice-unwrapped; + libreoffice = callPackage ../applications/office/libreoffice + (libreoffice-args // { + }); }); + libreoffice-fresh-unwrapped = libreoffice-fresh.libreoffice; libreoffice-still = lowPrio (callPackage ../applications/office/libreoffice/wrapper.nix { - libreoffice = libreoffice-still-unwrapped; + libreoffice = callPackage ../applications/office/libreoffice/still.nix + (libreoffice-args // { + poppler = poppler_0_61; + }); }); + libreoffice-still-unwrapped = libreoffice-still.libreoffice; libvmi = callPackage ../development/libraries/libvmi { }; @@ -17738,6 +17803,8 @@ with pkgs; looking-glass-client = callPackage ../applications/virtualization/looking-glass-client { }; + ltc-tools = callPackage ../applications/audio/ltc-tools { }; + lumail = callPackage ../applications/networking/mailreaders/lumail { lua = lua5_1; }; @@ -18109,6 +18176,8 @@ with pkgs; ptex = callPackage ../development/libraries/ptex {}; + qtcurve = libsForQt5.callPackage ../misc/themes/qtcurve {}; + rssguard = libsForQt5.callPackage ../applications/networking/feedreaders/rssguard { }; scudcloud = callPackage ../applications/networking/instant-messengers/scudcloud { }; @@ -18297,7 +18366,10 @@ with pkgs; opentimestamps-client = python3Packages.callPackage ../tools/misc/opentimestamps-client {}; - opentx = callPackage ../applications/misc/opentx { }; + opentx = callPackage ../applications/misc/opentx { + gcc-arm-embedded = pkgsCross.arm-embedded.buildPackages.gcc; + binutils-arm-embedded = pkgsCross.arm-embedded.buildPackages.binutils; + }; opera = callPackage ../applications/networking/browsers/opera {}; @@ -18311,6 +18383,8 @@ with pkgs; osmctools = callPackage ../applications/misc/osmctools { }; + osmium-tool = callPackage ../applications/misc/osmium-tool { }; + owamp = callPackage ../applications/networking/owamp { }; vivaldi = callPackage ../applications/networking/browsers/vivaldi {}; @@ -18482,6 +18556,8 @@ with pkgs; pmenu = callPackage ../applications/misc/pmenu { }; + polar-bookshelf = callPackage ../applications/misc/polar-bookshelf { }; + poezio = python3Packages.poezio; pommed = callPackage ../os-specific/linux/pommed {}; @@ -18757,6 +18833,10 @@ with pkgs; rstudio = libsForQt5.callPackage ../applications/editors/rstudio { boost = boost166; }; + rstudio-preview = libsForQt5.callPackage ../applications/editors/rstudio/preview.nix { + boost = boost166; + llvmPackages = llvmPackages_7; + }; rsync = callPackage ../applications/networking/sync/rsync { enableACLs = !(stdenv.isDarwin || stdenv.isSunOS || stdenv.isFreeBSD); @@ -18830,6 +18910,8 @@ with pkgs; inherit (gnome2) libart_lgpl; }; + scribusUnstable = libsForQt5.callPackage ../applications/office/scribus/unstable.nix { }; + seafile-client = libsForQt5.callPackage ../applications/networking/seafile-client { }; seeks = callPackage ../tools/networking/p2p/seeks { @@ -18846,6 +18928,8 @@ with pkgs; setbfree = callPackage ../applications/audio/setbfree { }; + sfxr-qt = libsForQt5.callPackage ../applications/audio/sfxr-qt { }; + shadowfox = callPackage ../tools/networking/shadowfox { }; shfmt = callPackage ../tools/text/shfmt { }; @@ -18964,6 +19048,8 @@ with pkgs; lightdm-mini-greeter = callPackage ../applications/display-managers/lightdm-mini-greeter { }; + ly = callPackage ../applications/display-managers/ly { }; + slic3r = callPackage ../applications/misc/slic3r { }; slic3r-prusa3d = callPackage ../applications/misc/slic3r/prusa3d.nix { }; @@ -19040,6 +19126,8 @@ with pkgs; apiKey = config.libspotify.apiKey or null; }; + sourcetrail = callPackage ../development/tools/sourcetrail { }; + spotifywm = callPackage ../applications/audio/spotifywm { }; squeezelite = callPackage ../applications/audio/squeezelite { }; @@ -19089,9 +19177,9 @@ with pkgs; saslSupport = false; sasl = cyrus_sasl; }) - subversion18 subversion19 subversion_1_10; + subversion18 subversion19 subversion_1_10 subversion_1_11; - subversion = subversion_1_10; + subversion = subversion_1_11; subversionClient = appendToName "client" (pkgs.subversion.override { bdbSupport = false; @@ -19383,6 +19471,7 @@ with pkgs; }; vim = callPackage ../applications/editors/vim { + inherit (darwin) cf-private; inherit (darwin.apple_sdk.frameworks) Carbon Cocoa; }; @@ -19741,6 +19830,8 @@ with pkgs; gtk = gtk2; }; + x11basic = callPackage ../development/compilers/x11basic { }; + x11vnc = callPackage ../tools/X11/x11vnc { }; x2goclient = libsForQt5.callPackage ../applications/networking/remote/x2goclient { }; @@ -20240,7 +20331,7 @@ with pkgs; fish-fillets-ng = callPackage ../games/fish-fillets-ng {}; - flightgear = libsForQt5.callPackage ../games/flightgear { }; + flightgear = libsForQt5.callPackage ../games/flightgear { openscenegraph = openscenegraph_3_4; }; flock = callPackage ../development/tools/flock { }; @@ -20272,7 +20363,7 @@ with pkgs; garden-of-coloured-lights = callPackage ../games/garden-of-coloured-lights { allegro = allegro4; }; gargoyle = callPackage ../games/gargoyle { - libtool = darwin.cctools; + inherit (darwin) cctools cf-private; }; gav = callPackage ../games/gav { }; @@ -20682,6 +20773,7 @@ with pkgs; # Torcs wants to make shared libraries linked with plib libraries (it provides static). # i686 is the only platform I know than can do that linking without plib built with -fPIC libpng = libpng12; + openscenegraph = openscenegraph_3_4; }; torcs = callPackage ../games/torcs { }; @@ -21151,16 +21243,6 @@ with pkgs; arpack = callPackage ../development/libraries/science/math/arpack { }; - atlas = callPackage ../development/libraries/science/math/atlas { - # The build process measures CPU capabilities and optimizes the - # library to perform best on that particular machine. That is a - # great feature, but it's of limited use with pre-built binaries - # coming from a central build farm. - tolerateCpuTimingInaccuracy = true; - liblapack = liblapackWithoutAtlas; - withLapack = false; - }; - blas = callPackage ../development/libraries/science/math/blas { }; brial = callPackage ../development/libraries/science/math/brial { }; @@ -21183,13 +21265,7 @@ with pkgs; libhomfly = callPackage ../development/libraries/science/math/libhomfly { }; - # We have essentially 4 permutations of liblapack: version 3.4.1 or 3.5.0, - # and with or without atlas as a dependency. The default `liblapack` is 3.4.1 - # with atlas. Atlas, when built with liblapack as a dependency, uses 3.5.0 - # without atlas. Etc. liblapack = callPackage ../development/libraries/science/math/liblapack {}; - liblapackWithoutAtlas = liblapackWithAtlas.override { atlas = null; }; - liblapackWithAtlas = liblapack; liblbfgs = callPackage ../development/libraries/science/math/liblbfgs { }; @@ -21256,9 +21332,7 @@ with pkgs; QuadProgpp = callPackage ../development/libraries/science/math/QuadProgpp { }; - scs = callPackage ../development/libraries/science/math/scs { - liblapack = liblapackWithoutAtlas; - }; + scs = callPackage ../development/libraries/science/math/scs { }; sage = callPackage ../applications/science/math/sage { nixpkgs = pkgs; @@ -21284,12 +21358,15 @@ with pkgs; ### SCIENCE/MOLECULAR-DYNAMICS + dl-poly-classic-mpi = callPackage ../applications/science/molecular-dynamics/dl-poly-classic { + mpi = openmpi; + }; + lammps = callPackage ../applications/science/molecular-dynamics/lammps { fftw = fftw; }; - lammps-mpi = appendToName "mpi" (lammps.override { - mpiSupport = true; + lammps-mpi = lowPrio (lammps.override { mpi = openmpi; }); @@ -21347,9 +21424,7 @@ with pkgs; abella = callPackage ../applications/science/logic/abella {}; - acgtk = callPackage ../applications/science/logic/acgtk { - ocamlPackages = ocaml-ng.ocamlPackages_4_05; - }; + acgtk = callPackage ../applications/science/logic/acgtk {}; alt-ergo = callPackage ../applications/science/logic/alt-ergo {}; @@ -21360,13 +21435,14 @@ with pkgs; boogie = dotnetPackages.Boogie; inherit (callPackage ./coq-packages.nix { - inherit (ocaml-ng) ocamlPackages_4_02 - ocamlPackages_4_05 - ; + inherit (ocaml-ng) ocamlPackages_4_05; }) mkCoqPackages - coq_8_4 coq_8_5 coq_8_6 coq_8_7 coq_8_8 - coqPackages_8_5 coqPackages_8_6 coqPackages_8_7 coqPackages_8_8 - coqPackages coq + coqPackages_8_5 coq_8_5 + coqPackages_8_6 coq_8_6 + coqPackages_8_7 coq_8_7 + coqPackages_8_8 coq_8_8 + coqPackages_8_9 coq_8_9 + coqPackages coq ; coq2html = callPackage ../applications/science/logic/coq2html { @@ -21586,14 +21662,14 @@ with pkgs; inherit (darwin.apple_sdk.frameworks) Accelerate CoreGraphics CoreVideo; }; - caffe2 = callPackage ../development/libraries/science/math/caffe2 { + caffe2 = callPackage ../development/libraries/science/math/caffe2 (rec { eigen3 = eigen3_3; inherit (python3Packages) python future six numpy pydot; protobuf = protobuf3_1; - python-protobuf = python3Packages.protobuf3_1; + python-protobuf = python3Packages.protobuf.override { inherit protobuf; }; # Used only for image loading. opencv3 = opencv3WithoutCuda; - }; + }); cntk = callPackage ../applications/science/math/cntk rec { cudaSupport = pkgs.config.cudaSupport or false; @@ -21668,9 +21744,7 @@ with pkgs; scilab-bin = callPackage ../applications/science/math/scilab-bin {}; - scotch = callPackage ../applications/science/math/scotch { - flex = flex_2_5_35; - }; + scotch = callPackage ../applications/science/math/scotch { }; msieve = callPackage ../applications/science/math/msieve { }; @@ -21978,14 +22052,9 @@ with pkgs; gnome-breeze = callPackage ../misc/themes/gnome-breeze { }; gnuk = callPackage ../misc/gnuk { - gcc-arm-embedded = gcc-arm-embedded-4_9; + gcc-arm-embedded = pkgsCross.arm-embedded.buildPackages.gcc; + binutils-arm-embedded = pkgsCross.arm-embedded.buildPackages.binutils; }; - gnuk-unstable = lowPrio (callPackage ../misc/gnuk/unstable.nix { - gcc-arm-embedded = gcc-arm-embedded-4_9; - }); - gnuk-git = lowPrio (callPackage ../misc/gnuk/git.nix { - gcc-arm-embedded = gcc-arm-embedded-4_9; - }); greybird = callPackage ../misc/themes/greybird { }; @@ -22047,8 +22116,6 @@ with pkgs; lilypond = lilypond-unstable; }; - lollypop-portal = callPackage ../misc/lollypop-portal { }; - openlilylib-fonts = callPackage ../misc/lilypond/fonts.nix { }; mailcore2 = callPackage ../development/libraries/mailcore2 { @@ -22095,38 +22162,56 @@ with pkgs; nixops-dns = callPackage ../tools/package-management/nixops/nixops-dns.nix { }; - /* - * Evaluate a NixOS configuration using this evaluation of Nixpkgs. - * - * With this function you can write, for example, a package that - * depends on a custom virtual machine image. - * - * Parameter: A module, path or list of those that represent the - * configuration of the NixOS system to be constructed. - * - * Result: An attribute set containing packages produced by this - * evaluation of NixOS, such as toplevel, kernel and - * initialRamdisk. - * The result can be extended in the modules by defining - * extra options in system.build. - * - * Unlike in plain NixOS, the nixpkgs.config, nixpkgs.overlays and - * nixpkgs.system options will be ignored by default. Instead, - * nixpkgs.pkgs will have the default value of pkgs as it was - * constructed right after invoking the nixpkgs function (e.g. the - * value of import { overlays = [./my-overlay.nix]; } - * but not the value of (import {} // { extra = ...; }). - * - * If you do want to use the config.nixpkgs options, you are - * probably better off by calling nixos/lib/eval-config.nix - * directly, even though it is possible to set config.nixpkgs.pkgs. - * - * For more information about writing NixOS modules, see - * https://nixos.org/nixos/manual/index.html#sec-writing-modules - * - * Note that you will need to have called Nixpkgs with the system - * parameter set to the right value for your deployment target. - */ + /* Evaluate a NixOS configuration using this evaluation of Nixpkgs. + + With this function you can write, for example, a package that + depends on a custom virtual machine image. + + Parameter: A module, path or list of those that represent the + configuration of the NixOS system to be constructed. + + Result: An attribute set containing packages produced by this + evaluation of NixOS, such as toplevel, kernel and + initialRamdisk. + The result can be extended in the modules by defining + extra attributes in system.build. + + Example: + + let + myOS = pkgs.nixos ({ lib, pkgs, config, ... }: { + + config.services.nginx = { + enable = true; + # ... + }; + + # Use config.system.build to exports relevant parts of a + # configuration. The runner attribute should not be + # considered a fully general replacement for systemd + # functionality. + config.system.build.run-nginx = config.systemd.services.nginx.runner; + }); + in + myOS.run-nginx + + Unlike in plain NixOS, the nixpkgs.config and + nixpkgs.system options will be ignored by default. Instead, + nixpkgs.pkgs will have the default value of pkgs as it was + constructed right after invoking the nixpkgs function (e.g. the + value of import { overlays = [./my-overlay.nix]; } + but not the value of (import {} // { extra = ...; }). + + If you do want to use the config.nixpkgs options, you are + probably better off by calling nixos/lib/eval-config.nix + directly, even though it is possible to set config.nixpkgs.pkgs. + + For more information about writing NixOS modules, see + https://nixos.org/nixos/manual/index.html#sec-writing-modules + + Note that you will need to have called Nixpkgs with the system + parameter set to the right value for your deployment target. + */ nixos = configuration: (import (self.path + "/nixos/lib/eval-config.nix") { inherit (pkgs.stdenv.hostPlatform) system; @@ -22644,6 +22729,8 @@ with pkgs; openal = null; }; + yacreader = libsForQt5.callPackage ../applications/graphics/yacreader { }; + yadm = callPackage ../applications/version-management/yadm { }; yamdi = callPackage ../tools/video/yamdi { }; @@ -22720,9 +22807,7 @@ with pkgs; tomb = callPackage ../os-specific/linux/tomb {}; - tomboy = callPackage ../applications/misc/tomboy { - mono = mono46; - }; + tomboy = callPackage ../applications/misc/tomboy { }; imatix_gsl = callPackage ../development/tools/imatix_gsl {}; @@ -22765,6 +22850,8 @@ with pkgs; chrome-gnome-shell = callPackage ../desktops/gnome-3/extensions/chrome-gnome-shell {}; + chrome-token-signing = libsForQt5.callPackage ../tools/security/chrome-token-signing {}; + NSPlist = callPackage ../development/libraries/NSPlist {}; PlistCpp = callPackage ../development/libraries/PlistCpp {}; @@ -22833,4 +22920,16 @@ with pkgs; }; tsung = callPackage ../applications/networking/tsung {}; + + qmk_firmware = callPackage ../development/misc/qmk_firmware { + avrgcc = pkgsCross.avr.buildPackages.gcc; + avrbinutils = pkgsCross.avr.buildPackages.binutils; + gcc-arm-embedded = pkgsCross.arm-embedded.buildPackages.gcc; + binutils-arm-embedded = pkgsCross.arm-embedded.buildPackages.binutils; + }; + + newlib = callPackage ../development/misc/newlib { }; + newlibCross = callPackage ../development/misc/newlib { + stdenv = crossLibcStdenv; + }; } diff --git a/pkgs/top-level/coq-packages.nix b/pkgs/top-level/coq-packages.nix index 75e9506ac04934f0d1469a148753216b0c83503d..2084140c3fd87f4bc80d464e0a1f9488e3d5a890 100644 --- a/pkgs/top-level/coq-packages.nix +++ b/pkgs/top-level/coq-packages.nix @@ -1,8 +1,4 @@ -{ lib, callPackage, newScope, recurseIntoAttrs -, gnumake3 -, ocamlPackages_4_02 -, ocamlPackages_4_05 -}: +{ lib, callPackage, newScope, recurseIntoAttrs, ocamlPackages_4_05 }: let mkCoqPackages' = self: coq: @@ -52,13 +48,19 @@ let in rec { + /* The function `mkCoqPackages` takes as input a derivation for Coq and produces + * a set of libraries built with that specific Coq. More libraries are known to + * this function than what is compatible with that version of Coq. Therefore, + * libraries that are not known to be compatible are removed (filtered out) from + * the resulting set. For meta-programming purposes (inpecting the derivations + * rather than building the libraries) this filtering can be disabled by setting + * a `dontFilter` attribute into the Coq derivation. + */ mkCoqPackages = coq: let self = mkCoqPackages' self coq; in - filterCoqPackages coq self; + if coq.dontFilter or false then self + else filterCoqPackages coq self; - coq_8_4 = callPackage ../applications/science/logic/coq/8.4.nix { - inherit (ocamlPackages_4_02) ocaml findlib lablgtk camlp5; - }; coq_8_5 = callPackage ../applications/science/logic/coq { ocamlPackages = ocamlPackages_4_05; version = "8.5pl3"; @@ -73,11 +75,15 @@ in rec { coq_8_8 = callPackage ../applications/science/logic/coq { version = "8.8.2"; }; + coq_8_9 = callPackage ../applications/science/logic/coq { + version = "8.9+beta1"; + }; coqPackages_8_5 = mkCoqPackages coq_8_5; coqPackages_8_6 = mkCoqPackages coq_8_6; coqPackages_8_7 = mkCoqPackages coq_8_7; coqPackages_8_8 = mkCoqPackages coq_8_8; + coqPackages_8_9 = mkCoqPackages coq_8_9; coqPackages = coqPackages_8_8; coq = coqPackages.coq; diff --git a/pkgs/top-level/darwin-packages.nix b/pkgs/top-level/darwin-packages.nix index 78ca0d20908df96006346eb331c1fd1bb8a4efda..b52afe98f7fa41d89fb99780076105c9e20941de 100644 --- a/pkgs/top-level/darwin-packages.nix +++ b/pkgs/top-level/darwin-packages.nix @@ -66,7 +66,7 @@ in stubs = callPackages ../os-specific/darwin/stubs { }; - trash = callPackage ../os-specific/darwin/trash { inherit (darwin.apple_sdk) frameworks; }; + trash = darwin.callPackage ../os-specific/darwin/trash { }; usr-include = callPackage ../os-specific/darwin/usr-include { }; diff --git a/pkgs/top-level/dotnet-packages.nix b/pkgs/top-level/dotnet-packages.nix index ee1b94c8638d5b70a5a48fb00524ae019f6abc61..bcfef9bdad88af8f02583b8b9d73279e78f3e36c 100644 --- a/pkgs/top-level/dotnet-packages.nix +++ b/pkgs/top-level/dotnet-packages.nix @@ -210,8 +210,8 @@ let self = dotnetPackages // overrides; dotnetPackages = with self; { SharpFont = fetchNuGet { baseName = "SharpFont"; - version = "3.1.0"; - sha256 = "137y514i4zi0i0qsx7nv4ibl4kifbr8xr23rqdkwf7yxf88jjmh2"; + version = "4.0.1"; + sha256 = "1yd3cm4ww0hw2k3aymf792hp6skyg8qn491m2a3fhkzvsl8z7vs8"; outputFiles = [ "lib/*" "config/*" ]; }; diff --git a/pkgs/top-level/haskell-packages.nix b/pkgs/top-level/haskell-packages.nix index e654b35d258db74c1459f85fe3fb146702a0b4b7..80dd1a04e73d03a40f275f9048afecd4cd744a26 100644 --- a/pkgs/top-level/haskell-packages.nix +++ b/pkgs/top-level/haskell-packages.nix @@ -5,11 +5,9 @@ let # These are attributes in compiler and packages that don't support integer-simple. integerSimpleExcludes = [ - "ghc7103Binary" "ghc821Binary" + "ghc844" "ghcjs" - "ghcjs710" - "ghcjs80" "ghcjs82" "ghcjs84" "integer-simple" @@ -44,31 +42,14 @@ in { compiler = { - ghc7103Binary = callPackage ../development/compilers/ghc/7.10.3-binary.nix { }; ghc821Binary = callPackage ../development/compilers/ghc/8.2.1-binary.nix { }; - ghc7103 = callPackage ../development/compilers/ghc/7.10.3.nix { - bootPkgs = packages.ghc7103Binary; - buildLlvmPackages = buildPackages.llvmPackages_35; - llvmPackages = pkgs.llvmPackages_35; - }; - ghc802 = callPackage ../development/compilers/ghc/8.0.2.nix { - bootPkgs = packages.ghc7103Binary; - inherit (buildPackages.python27Packages) sphinx; - buildLlvmPackages = buildPackages.llvmPackages_37; - llvmPackages = pkgs.llvmPackages_37; - }; ghc822 = callPackage ../development/compilers/ghc/8.2.2.nix { bootPkgs = packages.ghc821Binary; inherit (buildPackages.python3Packages) sphinx; buildLlvmPackages = buildPackages.llvmPackages_39; llvmPackages = pkgs.llvmPackages_39; }; - ghc843 = callPackage ../development/compilers/ghc/8.4.3.nix { - bootPkgs = packages.ghc821Binary; - buildLlvmPackages = buildPackages.llvmPackages_5; - llvmPackages = pkgs.llvmPackages_5; - }; ghc844 = callPackage ../development/compilers/ghc/8.4.4.nix { bootPkgs = packages.ghc821Binary; buildLlvmPackages = buildPackages.llvmPackages_5; @@ -79,31 +60,24 @@ in { buildLlvmPackages = buildPackages.llvmPackages_6; llvmPackages = pkgs.llvmPackages_6; }; + ghc862 = callPackage ../development/compilers/ghc/8.6.2.nix { + bootPkgs = packages.ghc822; + buildLlvmPackages = buildPackages.llvmPackages_6; + llvmPackages = pkgs.llvmPackages_6; + }; ghcHEAD = callPackage ../development/compilers/ghc/head.nix { bootPkgs = packages.ghc821Binary; buildLlvmPackages = buildPackages.llvmPackages_5; llvmPackages = pkgs.llvmPackages_5; }; ghcjs = compiler.ghcjs84; - # Use `import` because `callPackage inside`. - ghcjs710 = import ../development/compilers/ghcjs/7.10 { - bootPkgs = packages.ghc7103; - inherit (pkgs) cabal-install; - inherit (buildPackages) fetchgit fetchFromGitHub; - }; - # `import` on purpose; see above. - ghcjs80 = import ../development/compilers/ghcjs/8.0 { - bootPkgs = packages.ghc802; - inherit (pkgs) cabal-install; - inherit (buildPackages) fetchgit fetchFromGitHub; - }; ghcjs82 = callPackage ../development/compilers/ghcjs-ng { bootPkgs = packages.ghc822; ghcjsSrcJson = ../development/compilers/ghcjs-ng/8.2/git.json; stage0 = ../development/compilers/ghcjs-ng/8.2/stage0.nix; }; ghcjs84 = callPackage ../development/compilers/ghcjs-ng { - bootPkgs = packages.ghc843; + bootPkgs = packages.ghc844; ghcjsSrcJson = ../development/compilers/ghcjs-ng/8.4/git.json; stage0 = ../development/compilers/ghcjs-ng/8.4/stage0.nix; ghcjsDepOverrides = callPackage ../development/compilers/ghcjs-ng/8.4/dep-overrides.nix {}; @@ -126,22 +100,6 @@ in { # Always get compilers from `buildPackages` packages = let bh = buildPackages.haskell; in { - ghc7103 = callPackage ../development/haskell-modules { - buildHaskellPackages = bh.packages.ghc7103; - ghc = bh.compiler.ghc7103; - compilerConfig = callPackage ../development/haskell-modules/configuration-ghc-7.10.x.nix { }; - }; - ghc7103Binary = callPackage ../development/haskell-modules { - buildHaskellPackages = bh.packages.ghc7103Binary; - ghc = bh.compiler.ghc7103Binary; - compilerConfig = callPackage ../development/haskell-modules/configuration-ghc-7.10.x.nix { }; - packageSetConfig = bootstrapPackageSet; - }; - ghc802 = callPackage ../development/haskell-modules { - buildHaskellPackages = bh.packages.ghc802; - ghc = bh.compiler.ghc802; - compilerConfig = callPackage ../development/haskell-modules/configuration-ghc-8.0.x.nix { }; - }; ghc821Binary = callPackage ../development/haskell-modules { buildHaskellPackages = bh.packages.ghc821Binary; ghc = bh.compiler.ghc821Binary; @@ -153,11 +111,6 @@ in { ghc = bh.compiler.ghc822; compilerConfig = callPackage ../development/haskell-modules/configuration-ghc-8.2.x.nix { }; }; - ghc843 = callPackage ../development/haskell-modules { - buildHaskellPackages = bh.packages.ghc843; - ghc = bh.compiler.ghc843; - compilerConfig = callPackage ../development/haskell-modules/configuration-ghc-8.4.x.nix { }; - }; ghc844 = callPackage ../development/haskell-modules { buildHaskellPackages = bh.packages.ghc844; ghc = bh.compiler.ghc844; @@ -168,6 +121,11 @@ in { ghc = bh.compiler.ghc861; compilerConfig = callPackage ../development/haskell-modules/configuration-ghc-8.6.x.nix { }; }; + ghc862 = callPackage ../development/haskell-modules { + buildHaskellPackages = bh.packages.ghc862; + ghc = bh.compiler.ghc862; + compilerConfig = callPackage ../development/haskell-modules/configuration-ghc-8.6.x.nix { }; + }; ghcHEAD = callPackage ../development/haskell-modules { buildHaskellPackages = bh.packages.ghcHEAD; ghc = bh.compiler.ghcHEAD; diff --git a/pkgs/top-level/ocaml-packages.nix b/pkgs/top-level/ocaml-packages.nix index 62b773c51bf6eec5b9c133474bc0cd3fb535a753..1d0c14914362fcd065bbcaf0e1c77543d5132fc0 100644 --- a/pkgs/top-level/ocaml-packages.nix +++ b/pkgs/top-level/ocaml-packages.nix @@ -17,6 +17,8 @@ let buildOcaml = callPackage ../build-support/ocaml { }; + buildDunePackage = callPackage ../build-support/ocaml/dune.nix {}; + alcotest = callPackage ../development/ocaml-modules/alcotest {}; angstrom = callPackage ../development/ocaml-modules/angstrom { }; @@ -735,6 +737,8 @@ let vg = callPackage ../development/ocaml-modules/vg { }; + visitors = callPackage ../development/ocaml-modules/visitors { }; + wasm = callPackage ../development/ocaml-modules/wasm { }; wtf8 = callPackage ../development/ocaml-modules/wtf8 { }; @@ -1024,16 +1028,6 @@ let omake_rc1 = callPackage ../development/tools/ocaml/omake/0.9.8.6-rc1.nix { }; - verasco = callPackage ../development/tools/analysis/verasco (( - if system == "x86_64-linux" - then { tools = pkgs.pkgsi686Linux.stdenv.cc; } - else {} - ) // { - menhir = callPackage ../development/ocaml-modules/menhir { - version = "20170712"; - }; - }); - google-drive-ocamlfuse = callPackage ../applications/networking/google-drive-ocamlfuse { }; diff --git a/pkgs/top-level/perl-packages.nix b/pkgs/top-level/perl-packages.nix index c68e15aeb9616648581ea7e1074c650f73f40793..e94f8945d39956c695d92c314c6d48f7aa5c5ead 100644 --- a/pkgs/top-level/perl-packages.nix +++ b/pkgs/top-level/perl-packages.nix @@ -12103,19 +12103,19 @@ let }; PerconaToolkit = buildPerlPackage rec { - name = "Percona-Toolkit-3.0.11"; + name = "Percona-Toolkit-3.0.12"; src = fetchFromGitHub { owner = "percona"; repo = "percona-toolkit"; - rev = "6e5c5c5e6db0a32c6951c8f798c4547539cdab87"; - sha256 = "18wxvp7psqrx0zdvg47azrals572hv9fx1s3p0q65s87lnk3q63l"; + rev = "3.0.12"; + sha256 = "0xk4h4dzl80kf97lbx0nznx9ajrb6kkg7k3iwca3rj6f3rqggv9y"; }; outputs = [ "out" ]; buildInputs = [ DBDmysql DBI IOSocketSSL TermReadKey TimeHiRes ]; meta = { description = ''Collection of advanced command-line tools to perform a variety of MySQL and system tasks.''; homepage = http://www.percona.com/software/percona-toolkit; - license = with stdenv.lib.licenses; [ lgpl2 ]; + license = with stdenv.lib.licenses; [ gpl2 ]; platforms = stdenv.lib.platforms.linux; maintainers = with stdenv.lib.maintainers; [ izorkin ]; }; @@ -12482,7 +12482,8 @@ let export PERL_MB_OPT="--install_base=$out --prefix=$out" substituteInPlace Po4aBuilder.pm --replace "\$self->install_sets(\$self->installdirs)->{'bindoc'}" "'$out/share/man/man1'" ''; - buildPhase = "perl Build.PL --install_base=$out; ./Build build"; + + buildPhase = "perl Build.PL --install_base=$out --install_path=\"lib=$out/${perl.libPrefix}\"; ./Build build"; installPhase = "./Build install"; checkPhase = '' export SGML_CATALOG_FILES=${pkgs.docbook_sgml_dtd_41}/sgml/dtd/docbook-4.1/docbook.cat diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix index b2cff4940c136391a5b77c0849ff04edfa7d08b9..cbb69c7026992c8c3b808e8d1226e8c80ce2fb3e 100644 --- a/pkgs/top-level/python-packages.nix +++ b/pkgs/top-level/python-packages.nix @@ -166,6 +166,10 @@ in { agate-dbf = callPackage ../development/python-modules/agate-dbf { }; + alerta = callPackage ../development/python-modules/alerta { }; + + alerta-server = callPackage ../development/python-modules/alerta-server { }; + phonenumbers = callPackage ../development/python-modules/phonenumbers { }; agate-excel = callPackage ../development/python-modules/agate-excel { }; @@ -202,6 +206,8 @@ in { autograd = callPackage ../development/python-modules/autograd { }; + autologging = callPackage ../development/python-modules/autologging { }; + automat = callPackage ../development/python-modules/automat { }; awkward = callPackage ../development/python-modules/awkward { }; @@ -212,6 +218,8 @@ in { aws-adfs = callPackage ../development/python-modules/aws-adfs { }; + atomman = callPackage ../development/python-modules/atomman { }; + # packages defined elsewhere amazon_kclpy = callPackage ../development/python-modules/amazon_kclpy { }; @@ -264,10 +272,14 @@ in { brotli = callPackage ../development/python-modules/brotli { }; + broadlink = callPackage ../development/python-modules/broadlink { }; + browser-cookie3 = callPackage ../development/python-modules/browser-cookie3 { }; browsermob-proxy = disabledIf isPy3k (callPackage ../development/python-modules/browsermob-proxy {}); + bt_proximity = callPackage ../development/python-modules/bt-proximity { }; + bugseverywhere = callPackage ../applications/version-management/bugseverywhere {}; cachecontrol = callPackage ../development/python-modules/cachecontrol { }; @@ -284,6 +296,8 @@ in { btchip = callPackage ../development/python-modules/btchip { }; + datamodeldict = callPackage ../development/python-modules/datamodeldict { }; + dbf = callPackage ../development/python-modules/dbf { }; dbfread = callPackage ../development/python-modules/dbfread { }; @@ -334,6 +348,8 @@ in { eradicate = callPackage ../development/python-modules/eradicate { }; + fastpbkdf2 = callPackage ../development/python-modules/fastpbkdf2 { }; + fido2 = callPackage ../development/python-modules/fido2 { }; filterpy = callPackage ../development/python-modules/filterpy { }; @@ -348,6 +364,8 @@ in { gidgethub = callPackage ../development/python-modules/gidgethub { }; + gin-config = callPackage ../development/python-modules/gin-config { }; + globus-sdk = callPackage ../development/python-modules/globus-sdk { }; goocalendar = callPackage ../development/python-modules/goocalendar { }; @@ -374,6 +392,10 @@ in { hdmedians = callPackage ../development/python-modules/hdmedians { }; + hoomd-blue = toPythonModule (callPackage ../development/python-modules/hoomd-blue { + inherit python; + }); + httpsig = callPackage ../development/python-modules/httpsig { }; i3ipc = callPackage ../development/python-modules/i3ipc { }; @@ -428,6 +450,8 @@ in { nvchecker = callPackage ../development/python-modules/nvchecker { }; + numericalunits = callPackage ../development/python-modules/numericalunits { }; + oauthenticator = callPackage ../development/python-modules/oauthenticator { }; ordered-set = callPackage ../development/python-modules/ordered-set { }; @@ -436,6 +460,10 @@ in { outcome = callPackage ../development/python-modules/outcome {}; + ovito = toPythonModule (pkgs.libsForQt5.callPackage ../development/python-modules/ovito { + pythonPackages = self; + }); + palettable = callPackage ../development/python-modules/palettable { }; pathlib = callPackage ../development/python-modules/pathlib { }; @@ -502,6 +530,8 @@ in { pyfakefs = callPackage ../development/python-modules/pyfakefs {}; + pyfttt = callPackage ../development/python-modules/pyfttt { }; + pygame = callPackage ../development/python-modules/pygame { }; pygame-git = callPackage ../development/python-modules/pygame/git.nix { }; @@ -650,8 +680,12 @@ in { slicerator = callPackage ../development/python-modules/slicerator { }; + snapcast = callPackage ../development/python-modules/snapcast { }; + spglib = callPackage ../development/python-modules/spglib { }; + sslib = callPackage ../development/python-modules/sslib { }; + statistics = callPackage ../development/python-modules/statistics { }; sumo = callPackage ../development/python-modules/sumo { }; @@ -664,6 +698,8 @@ in { hdf5 = pkgs.hdf5.override { zlib = pkgs.zlib; }; }; + trueskill = callPackage ../development/python-modules/trueskill { }; + trustme = callPackage ../development/python-modules/trustme {}; trio = callPackage ../development/python-modules/trio {}; @@ -680,6 +716,8 @@ in { pyunbound = callPackage ../tools/networking/unbound/python.nix { }; + WazeRouteCalculator = callPackage ../development/python-modules/WazeRouteCalculator { }; + # packages defined here aafigure = callPackage ../development/python-modules/aafigure { }; @@ -702,12 +740,16 @@ in { aiofiles = callPackage ../development/python-modules/aiofiles { }; + aioh2 = callPackage ../development/python-modules/aioh2 { }; + aiohttp = callPackage ../development/python-modules/aiohttp { }; aiohttp-cors = callPackage ../development/python-modules/aiohttp/cors.nix { }; aiohttp-jinja2 = callPackage ../development/python-modules/aiohttp-jinja2 { }; + aiohttp-remotes = callPackage ../development/python-modules/aiohttp-remotes { }; + aioprocessing = callPackage ../development/python-modules/aioprocessing { }; ajpy = callPackage ../development/python-modules/ajpy { }; @@ -1122,6 +1164,8 @@ in { click-plugins = callPackage ../development/python-modules/click-plugins {}; + click-repl = callPackage ../development/python-modules/click-repl { }; + click-threading = callPackage ../development/python-modules/click-threading {}; cligj = callPackage ../development/python-modules/cligj { }; @@ -1486,6 +1530,8 @@ in { dopy = callPackage ../development/python-modules/dopy { }; + dpath = callPackage ../development/python-modules/dpath { }; + dpkt = callPackage ../development/python-modules/dpkt {}; urllib3 = callPackage ../development/python-modules/urllib3 {}; @@ -1630,6 +1676,8 @@ in { inherit (pkgs.gitAndTools) git-annex; }; + python-gitlab = callPackage ../development/python-modules/python-gitlab { }; + google-cloud-sdk = callPackage ../tools/admin/google-cloud-sdk { }; google-cloud-sdk-gce = callPackage ../tools/admin/google-cloud-sdk { with-gce=true; }; @@ -1666,8 +1714,6 @@ in { hupper = callPackage ../development/python-modules/hupper {}; - hovercraft = callPackage ../development/python-modules/hovercraft { }; - hsaudiotag = callPackage ../development/python-modules/hsaudiotag { }; hsaudiotag3k = callPackage ../development/python-modules/hsaudiotag3k { }; @@ -1852,6 +1898,8 @@ in { poyo = callPackage ../development/python-modules/poyo { }; + priority = callPackage ../development/python-modules/priority { }; + prov = callPackage ../development/python-modules/prov { }; pudb = callPackage ../development/python-modules/pudb { }; @@ -2190,8 +2238,6 @@ in { pyfribidi = callPackage ../development/python-modules/pyfribidi { }; - docker_compose = callPackage ../development/python-modules/docker_compose {}; - pyftpdlib = callPackage ../development/python-modules/pyftpdlib { }; fdroidserver = callPackage ../development/python-modules/fdroidserver { }; @@ -2282,20 +2328,8 @@ in { grappelli_safe = callPackage ../development/python-modules/grappelli_safe { }; - pytorch = let - # Fails with CUDA 9.1 and GCC 6.4: - # https://github.com/pytorch/pytorch/issues/5831 - # https://devtalk.nvidia.com/default/topic/1028112 - # We should be able to remove this when CUDA 9.2 is released. - cudatoolkit_9 = pkgs.cudatoolkit_9.override { - gcc6 = pkgs.gcc5; - }; - in callPackage ../development/python-modules/pytorch { + pytorch = callPackage ../development/python-modules/pytorch { cudaSupport = pkgs.config.cudaSupport or false; - cudatoolkit = cudatoolkit_9; - cudnn = pkgs.cudnn_cudatoolkit_9.override { - inherit cudatoolkit_9; - }; }; pytorchWithCuda = self.pytorch.override { @@ -2448,10 +2482,14 @@ in { hetzner = callPackage ../development/python-modules/hetzner { }; + homeassistant-pyozw = callPackage ../development/python-modules/homeassistant-pyozw { }; + htmllaundry = callPackage ../development/python-modules/htmllaundry { }; html5lib = callPackage ../development/python-modules/html5lib { }; + httmock = callPackage ../development/python-modules/httmock { }; + http_signature = callPackage ../development/python-modules/http_signature { }; httpbin = callPackage ../development/python-modules/httpbin { }; @@ -2724,9 +2762,11 @@ in { mathics = callPackage ../development/python-modules/mathics { }; - matplotlib = callPackage ../development/python-modules/matplotlib { + matplotlib = let + path = if isPy3k then ../development/python-modules/matplotlib/default.nix else + ../development/python-modules/matplotlib/2.nix; + in callPackage path { stdenv = if stdenv.isDarwin then pkgs.clangStdenv else pkgs.stdenv; - enableGhostscript = true; inherit (pkgs.darwin.apple_sdk.frameworks) Cocoa; }; @@ -3008,6 +3048,8 @@ in { ply = callPackage ../development/python-modules/ply { }; + plyplus = callPackage ../development/python-modules/plyplus { }; + plyvel = callPackage ../development/python-modules/plyvel { }; osc = callPackage ../development/python-modules/osc { }; @@ -3735,8 +3777,11 @@ in { }; }; + prompt_toolkit = self.prompt_toolkit_1; + + prompt_toolkit_1 = callPackage ../development/python-modules/prompt_toolkit/1.nix { }; - prompt_toolkit = callPackage ../development/python-modules/prompt_toolkit { }; + prompt_toolkit_2 = callPackage ../development/python-modules/prompt_toolkit { }; protobuf = callPackage ../development/python-modules/protobuf { disabled = isPyPy; @@ -3744,19 +3789,15 @@ in { protobuf = pkgs.protobuf; }; - protobuf3_1 = callPackage ../development/python-modules/protobuf { - disabled = isPyPy; - doCheck = !isPy3k; - protobuf = pkgs.protobuf3_1; - }; - psd-tools = callPackage ../development/python-modules/psd-tools { }; psutil = callPackage ../development/python-modules/psutil { }; psycopg2 = callPackage ../development/python-modules/psycopg2 {}; - ptpython = callPackage ../development/python-modules/ptpython {}; + ptpython = callPackage ../development/python-modules/ptpython { + prompt_toolkit = self.prompt_toolkit_2; + }; publicsuffix = callPackage ../development/python-modules/publicsuffix {}; @@ -4451,22 +4492,24 @@ in { }; }; + owslib = callPackage ../development/python-modules/owslib { }; + PyICU = buildPythonPackage rec { - name = "PyICU-2.0.3"; + name = "PyICU-2.2"; src = pkgs.fetchurl { url = "mirror://pypi/P/PyICU/${name}.tar.gz"; - sha256 = "0pzss3l0b0vcsyr7wlqdd6pkcqldspajfgd9k2iijf6r152d2ln4"; + sha256 = "0wq9y5fi1ighgf5aws9nr87vi1w44p7q1k83rx2y3qj5d2xyhspa"; }; patches = [ (pkgs.fetchpatch { - url = https://sources.debian.org/data/main/p/pyicu/2.0.3-1/debian/patches/icu_test.patch; + url = https://sources.debian.org/data/main/p/pyicu/2.2-1/debian/patches/icu_test.patch; sha256 = "1iavdkyqixm9i753svl17barla93b7jzgkw09dn3hnggamx7zwx9"; }) ]; - buildInputs = [ pkgs.icu self.pytest ]; + buildInputs = [ pkgs.icu60 self.pytest ]; propagatedBuildInputs = [ self.six ]; @@ -5962,27 +6005,7 @@ in { typeguard = callPackage ../development/python-modules/typeguard { }; - ruamel_yaml = buildPythonPackage rec { - name = "ruamel.yaml-${version}"; - version = "0.15.35"; - - src = pkgs.fetchurl { - url = "mirror://pypi/r/ruamel.yaml/${name}.tar.gz"; - sha256 = "0xggyfaj6vprggahf7cq8kp9j79rb7hn8ndk3bxj2sxvwhhliiwd"; - }; - - # Tests cannot load the module to test - doCheck = false; - - propagatedBuildInputs = with self; [ ruamel_base typing ] ++ - (optional (!isPy3k) self.ruamel_ordereddict); - - meta = { - description = "YAML parser/emitter that supports roundtrip preservation of comments, seq/map flow style, and map key order"; - homepage = https://bitbucket.org/ruamel/yaml; - license = licenses.mit; - }; - }; + ruamel_yaml = callPackage ../development/python-modules/ruamel_yaml { }; runsnakerun = buildPythonPackage rec { name = "runsnakerun-2.0.4"; @@ -6554,7 +6577,7 @@ in { }; in if isPy3k then py3 else py2; - pythondaemon = callPackage ../development/python-modules/python-daemon { }; + python-daemon = callPackage ../development/python-modules/python-daemon { }; sympy = callPackage ../development/python-modules/sympy { }; @@ -10903,6 +10926,10 @@ EOF todoist = callPackage ../development/python-modules/todoist { }; + zstd = callPackage ../development/python-modules/zstd { + inherit (pkgs) zstd pkgconfig; + }; + zxcvbn-python = callPackage ../development/python-modules/zxcvbn-python { }; incremental = callPackage ../development/python-modules/incremental { }; @@ -11043,6 +11070,8 @@ EOF inherit python; })).python; + scour = callPackage ../development/python-modules/scour { }; + }); in fix' (extends overrides packages) diff --git a/pkgs/top-level/release-cross.nix b/pkgs/top-level/release-cross.nix index 89a8af6794f68b699ca8ed6b2e2e41fcc013515e..b06bb5393beacaa7f63cefbba779b110ed6b6441 100644 --- a/pkgs/top-level/release-cross.nix +++ b/pkgs/top-level/release-cross.nix @@ -12,6 +12,12 @@ with import ./release-lib.nix { inherit supportedSystems scrubJobs; }; let nativePlatforms = all; + embedded = { + buildPackages.binutils = nativePlatforms; + buildPackages.gcc = nativePlatforms; + libcCross = nativePlatforms; + }; + common = { buildPackages.binutils = nativePlatforms; gmp = nativePlatforms; @@ -24,7 +30,7 @@ let buildPackages.gcc = nativePlatforms; coreutils = nativePlatforms; haskell.packages.ghcHEAD.hello = nativePlatforms; - haskell.packages.ghc822.hello = nativePlatforms; + haskell.packages.ghc844.hello = nativePlatforms; }; linuxCommon = lib.recursiveUpdate gnuCommon { @@ -81,11 +87,11 @@ in # good idea lest there be some irrelevant pass-through debug attrs that # cause false negatives. testEqualOne = path: system: let - f = path: attrs: builtins.toString (lib.getAttrFromPath path (allPackages attrs)); + f = path: crossSystem: system: builtins.toString (lib.getAttrFromPath path (pkgsForCross crossSystem system)); in assertTrue ( - f path { inherit system; } + f path null system == - f (["buildPackages"] ++ path) { inherit system crossSystem; } + f (["buildPackages"] ++ path) crossSystem system ); testEqual = path: systems: forMatchingSystems systems (testEqualOne path); @@ -134,12 +140,20 @@ in android64 = mapTestOnCross lib.systems.examples.aarch64-android-prebuilt (linuxCommon // { }); + avr = mapTestOnCross lib.systems.examples.avr embedded; + arm-embedded = mapTestOnCross lib.systems.examples.arm-embedded embedded; + powerpc-embedded = mapTestOnCross lib.systems.examples.ppc-embedded embedded; + aarch64-embedded = mapTestOnCross lib.systems.examples.aarch64-embedded embedded; + i686-embedded = mapTestOnCross lib.systems.examples.i686-embedded embedded; + x86_64-embedded = mapTestOnCross lib.systems.examples.x86_64-embedded embedded; + alpha-embedded = mapTestOnCross lib.systems.examples.alpha-embedded embedded; + /* Cross-built bootstrap tools for every supported platform */ bootstrapTools = let tools = import ../stdenv/linux/make-bootstrap-tools-cross.nix { system = "x86_64-linux"; }; maintainers = [ lib.maintainers.dezgeg ]; mkBootstrapToolsJob = drv: - assert lib.elem drv.system (supportedSystems ++ [ "aarch64-linux" ]); + assert lib.elem drv.system supportedSystems; hydraJob' (lib.addMetaAttrs { inherit maintainers; } drv); in lib.mapAttrsRecursiveCond (as: !lib.isDerivation as) (name: mkBootstrapToolsJob) tools; } diff --git a/pkgs/top-level/release-lib.nix b/pkgs/top-level/release-lib.nix index 623c9d9cb000e7ca8915e9a09c955e5921e868c2..957de2dcc307cb1ba72ea18d9dc42dc9c1f80348 100644 --- a/pkgs/top-level/release-lib.nix +++ b/pkgs/top-level/release-lib.nix @@ -11,8 +11,6 @@ in with lib; rec { - allPackages = args: packageSet (args // nixpkgsArgs); - pkgs = packageSet (lib.recursiveUpdate { system = "x86_64-linux"; config.allowUnsupportedSystem = true; } nixpkgsArgs); inherit lib; @@ -23,29 +21,52 @@ rec { /* !!! Hack: poor man's memoisation function. Necessary to prevent Nixpkgs from being evaluated again and again for every job/platform pair. */ - pkgsFor = system: - if system == "x86_64-linux" then pkgs_x86_64_linux - else if system == "i686-linux" then pkgs_i686_linux - else if system == "aarch64-linux" then pkgs_aarch64_linux - else if system == "armv6l-linux" then pkgs_armv6l_linux - else if system == "armv7l-linux" then pkgs_armv7l_linux - else if system == "x86_64-darwin" then pkgs_x86_64_darwin - else if system == "x86_64-freebsd" then pkgs_x86_64_freebsd - else if system == "i686-freebsd" then pkgs_i686_freebsd - else if system == "i686-cygwin" then pkgs_i686_cygwin - else if system == "x86_64-cygwin" then pkgs_x86_64_cygwin - else abort "unsupported system type: ${system}"; - - pkgs_x86_64_linux = allPackages { system = "x86_64-linux"; }; - pkgs_i686_linux = allPackages { system = "i686-linux"; }; - pkgs_aarch64_linux = allPackages { system = "aarch64-linux"; }; - pkgs_armv6l_linux = allPackages { system = "armv6l-linux"; }; - pkgs_armv7l_linux = allPackages { system = "armv7l-linux"; }; - pkgs_x86_64_darwin = allPackages { system = "x86_64-darwin"; }; - pkgs_x86_64_freebsd = allPackages { system = "x86_64-freebsd"; }; - pkgs_i686_freebsd = allPackages { system = "i686-freebsd"; }; - pkgs_i686_cygwin = allPackages { system = "i686-cygwin"; }; - pkgs_x86_64_cygwin = allPackages { system = "x86_64-cygwin"; }; + mkPkgsFor = crossSystem: let + packageSet' = args: packageSet (args // { inherit crossSystem; } // nixpkgsArgs); + + pkgs_x86_64_linux = packageSet' { system = "x86_64-linux"; }; + pkgs_i686_linux = packageSet' { system = "i686-linux"; }; + pkgs_aarch64_linux = packageSet' { system = "aarch64-linux"; }; + pkgs_armv6l_linux = packageSet' { system = "armv6l-linux"; }; + pkgs_armv7l_linux = packageSet' { system = "armv7l-linux"; }; + pkgs_x86_64_darwin = packageSet' { system = "x86_64-darwin"; }; + pkgs_x86_64_freebsd = packageSet' { system = "x86_64-freebsd"; }; + pkgs_i686_freebsd = packageSet' { system = "i686-freebsd"; }; + pkgs_i686_cygwin = packageSet' { system = "i686-cygwin"; }; + pkgs_x86_64_cygwin = packageSet' { system = "x86_64-cygwin"; }; + + in system: + if system == "x86_64-linux" then pkgs_x86_64_linux + else if system == "i686-linux" then pkgs_i686_linux + else if system == "aarch64-linux" then pkgs_aarch64_linux + else if system == "armv6l-linux" then pkgs_armv6l_linux + else if system == "armv7l-linux" then pkgs_armv7l_linux + else if system == "x86_64-darwin" then pkgs_x86_64_darwin + else if system == "x86_64-freebsd" then pkgs_x86_64_freebsd + else if system == "i686-freebsd" then pkgs_i686_freebsd + else if system == "i686-cygwin" then pkgs_i686_cygwin + else if system == "x86_64-cygwin" then pkgs_x86_64_cygwin + else abort "unsupported system type: ${system}"; + + pkgsFor = pkgsForCross null; + + + # More poor man's memoisation + pkgsForCross = let + examplesByConfig = lib.flip lib.mapAttrs' + (builtins.removeAttrs lib.systems.examples [ "riscv" ]) + (_: crossSystem: nameValuePair crossSystem.config { + inherit crossSystem; + pkgsFor = mkPkgsFor crossSystem; + }); + native = mkPkgsFor null; + in crossSystem: let + candidate = examplesByConfig.${crossSystem.config} or null; + in if crossSystem == null + then native + else if candidate != null && lib.matchAttrs crossSystem candidate.crossSystem + then candidate.pkgsFor + else mkPkgsFor crossSystem; # uncached fallback # Given a list of 'meta.platforms'-style patterns, return the sublist of @@ -90,30 +111,32 @@ rec { platform as an argument . We return an attribute set containing a derivation for each supported platform, i.e. ‘{ x86_64-linux = f pkgs_x86_64_linux; i686-linux = f pkgs_i686_linux; ... }’. */ - testOn = metaPatterns: f: forMatchingSystems metaPatterns - (system: hydraJob' (f (pkgsFor system))); + testOn = testOnCross null; /* Similar to the testOn function, but with an additional - 'crossSystem' parameter for allPackages, defining the target + 'crossSystem' parameter for packageSet', defining the target platform for cross builds. */ testOnCross = crossSystem: metaPatterns: f: forMatchingSystems metaPatterns - (system: hydraJob' (f (allPackages { inherit system crossSystem; }))); + (system: hydraJob' (f (pkgsForCross crossSystem system))); /* Given a nested set where the leaf nodes are lists of platforms, map each leaf node to `testOn [platforms...] (pkgs: pkgs.)'. */ - mapTestOn = mapAttrsRecursive - (path: metaPatterns: testOn metaPatterns (pkgs: getAttrFromPath path pkgs)); + mapTestOn = _mapTestOnHelper id null; - /* Similar to the testOn function, but with an additional 'crossSystem' - * parameter for allPackages, defining the target platform for cross builds, - * and triggering the build of the host derivation (cross built - crossDrv). */ - mapTestOnCross = crossSystem: mapAttrsRecursive + _mapTestOnHelper = f: crossSystem: mapAttrsRecursive (path: metaPatterns: testOnCross crossSystem metaPatterns - (pkgs: addMetaAttrs { maintainers = crossMaintainers; } (getAttrFromPath path pkgs))); + (pkgs: f (getAttrFromPath path pkgs))); + + + /* Similar to the testOn function, but with an additional 'crossSystem' + * parameter for packageSet', defining the target platform for cross builds, + * and triggering the build of the host derivation. */ + mapTestOnCross = _mapTestOnHelper + (addMetaAttrs { maintainers = crossMaintainers; }); /* Recursively map a (nested) set of derivations to an isomorphic diff --git a/pkgs/top-level/release-small.nix b/pkgs/top-level/release-small.nix index 7f574574d8d721d7cbfa1da895168f5208eaec9d..01cbc004b8f09adc5780677a6962010b702c79a5 100644 --- a/pkgs/top-level/release-small.nix +++ b/pkgs/top-level/release-small.nix @@ -18,7 +18,6 @@ with import ./release-lib.nix { inherit supportedSystems; }; aspell = all; at = linux; - atlas = linux; autoconf = all; automake = all; avahi = unix; # Cygwin builds fail diff --git a/pkgs/top-level/release.nix b/pkgs/top-level/release.nix index 59e3d5133bbe42f9407f9a7247720ae96c83394f..9bdad5473d4e1dfc203797203328d34f6ae8a28c 100644 --- a/pkgs/top-level/release.nix +++ b/pkgs/top-level/release.nix @@ -66,7 +66,7 @@ let jobs.inkscape.x86_64-darwin # jobs.gimp.x86_64-darwin jobs.emacs.x86_64-darwin - # jobs.wireshark.x86_64-darwin + jobs.wireshark.x86_64-darwin jobs.transmission-gtk.x86_64-darwin # Tests diff --git a/pkgs/top-level/stage.nix b/pkgs/top-level/stage.nix index 37724a870a30f3097c89821f3323d95689cb1616..1d412a6582cda5f3e120635d743267ae90ca46a4 100644 --- a/pkgs/top-level/stage.nix +++ b/pkgs/top-level/stage.nix @@ -150,7 +150,7 @@ let # All packages built for i686 Linux. # Used by wine, firefox with debugging version of Flash, ... - pkgsi686Linux = assert stdenv.hostPlatform.isLinux; nixpkgsFun { + pkgsi686Linux = if stdenv.hostPlatform.isLinux && stdenv.hostPlatform.isx86 then nixpkgsFun { inherit overlays config; ${if stdenv.hostPlatform == stdenv.buildPlatform then "localSystem" else "crossSystem"} = { @@ -158,13 +158,15 @@ let cpu = lib.systems.parse.cpuTypes.i686; }; }; - }; + } else throw "i686 Linux package set can only be used with the x86 family."; # Extend the package set with zero or more overlays. This preserves # preexisting overlays. Prefer to initialize with the right overlays # in one go when calling Nixpkgs, for performance and simplicity. appendOverlays = extraOverlays: - import ./stage.nix (args // { overlays = args.overlays ++ extraOverlays; }); + if extraOverlays == [] + then self + else import ./stage.nix (args // { overlays = args.overlays ++ extraOverlays; }); # Extend the package set with a single overlay. This preserves # preexisting overlays. Prefer to initialize with the right overlays